Psyllid ID: psy17620

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-
Protein Sequence
MDFRTPQLTFGEIEQWMTRVLDEMMTENLVCSCQMTEWMLDNIGMTVLAANGVWWTAEVENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKKFNTVLIVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDSLSPRSVVRGELTKNDRKKFNTVLIVDVHARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLESVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAGMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDSHPRR
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccEEEEEEEHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccEEEEEEEEcccHHHHHHHHHHHcccccccccHHHccccEEccccccccccEEEEEcccccccccccEEEEcEEEEEcccEEccccccEEEccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEEccEEEEEEcccccccccccccHHHccccccccccccHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccEEcccccccccccHHHHHHHHHHcccccccccccEEEEccccHHHHHHccccccccccEEEEccccccccccccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEccccEEEEEEEEHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHcHHHHHHHHHHHccccHHHHcHHHHHHHHHHcccccccccccHHHHHcHHccccHHHHHHHHHHHHHHHHHHccccccccEEEEccccEEEEEEEEEEEEEHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEEccccccccccccccEEEEEEEEEEEEEEHHccccccEEEcccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccHHHHHHHcHccHHHHHHHHHHHHHHHHHHHHHHcHEEEccEEEEcccEEEEEEEcccccccccccHHHHHHHHccHHEEcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccEEEEccccccHHHHHHHHHHHHHHHccccEEEEcccccccccccEEEEccccHHcccHHHHHHHHHHHccccccccccEEEEEccccccEEEEccccccccccEEEEccccEEEccccEEEEEEEHHHHHcccccc
Coil and Loop (DISEMBL)
mdfrtpqltfgEIEQWMTRVLDEMMTENLVCSCQMTEWMLDNIGMTVLAANGVWWTAEVENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVRGEltkndrkkFNTVLIVDVrgeltkndrkkfNTVLIVDVHARDiidnfigsdslsprsvvrgeltkndrkkfNTVLIVDVHARDIIDNFVrdgsavrgeltkndrkkfNTVLIVDVHAreikdnfigsnslSRSLESVIMWEthknprvieqclvpnRLEHLEQLKDGLEACEKSLQDYLTDkrnafprfffisddellsilgsssptAIQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSgsfeygyeheymglngsfeygyeymglngrlvitpltdRIYLTITQALSMrlgaapagmDFLAFGKILsglsqcgawgcfdefnriDVSVLSVISTQLLTIRTALLINatrfqfeghdiimnnkvgifitmnpgyagrtelpesvkalfrpvvcivpdFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRdmnlpkfvsEDVVQMYETMLTrhstmivgptgggKSVVINALVKtstvlgypartytlnpkAVSVIELYgvlnpetrdwYDGLLSNIFRavnkpldpgskerkyilfdGDVDALWIENMnsvmddnkiltlANGERIRLLAHCQLLfeihpiqsdshprr
Flexible Loop (DISEMBL)
mdfrtpqltfgeieQWMTRVLDEMMTENLVCSCQMTEWMLDNIGMTVLAANGVWWTAEVENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVrgeltkndrkkfntvlivdvrgeltkndrkkfntvlivdvharDIIDnfigsdslsprsvvrgeltkndrkkfntvlivdvhardiidnfvrdgsavrgeltkndrkkfntvlivdvhareikdnfigsnslsRSLESVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAGMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALrdmnlpkfvSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVlgypartytlnpkavSVIELYGVLNPETRDWYDGLLSNIFRAvnkpldpgskerkyILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLfeihpiqsdshprr
Low Complexity Region (SEG)
MDFRTPQLTFGEIEQWMTRVLDEMMTENLVCSCQMTEWMLDNIGMTVLAANGVWWTAEVENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKKFNTVLIVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDSLSPRSVVRGELTKNDRKKFNTVLIVDVHARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLESVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAGMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDSHPRR
Disordered region (IsUnstruct)
*******LTFGEIEQWMTRVLDEMMTENLVCSCQMTEWMLDNIGMTVLAANGVWWTAEVENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKKFNTVLIVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDSL***SVVRGELTKNDRKKFNTVLIVDVHARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLESVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAGMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHP*********
Disordered Region (DISOPRED)
MDFRTPQLTFGEIEQWMTRVLDEMMTENLVCSCQMTEWMLDNIGMTVLAANGVWWTAEVENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKKFNTVLIVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDSLSPRSVVRGELTKNDRKKFNTVLIVDVHARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLESVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAGMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI********
Disordered Region (DISEMBL)
MDFRTPQLTFGEIEQWMTRVLDEMMTENLVCSCQMTEWMLDNIGMTVLAANGVWWTAEVENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKKFNTVLIVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDSLSPRSVVRGELTKNDRKKFNTVLIVDVHARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLESVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAGMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI********
Disordered Region (DISPRO)
*DFRTPQLTFGEIEQWMTRVLDEMMTENLVCSCQMTEWMLDNIGMTVLAANGVWWTAEVENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKKFNTVLIVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDSLSPRSVVRGELTKNDRKKFNTVLIVDVHARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLESVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAGMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQS******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDFRTPQLTFGEIEQWMTRVLDEMMTENLVCSCQMTEWMLDNIGMTVLAANGVWWTAEVENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKKFNTVLIVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDSLSPRSVVRGELTKNDRKKFNTVLIVDVHARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLESVIMWETHKNPRVIEQCLVPNRLEHxxxxxxxxxxxxxxxxxxxxxKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAGMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDSHPRR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	741	2.2.26 [Sep-21-2011]
Q8IVF4	4471	Dynein heavy chain 10, ax	yes	N/A	0.546	0.090	0.613	1e-169
Q9SMH3	4625	Dynein-1-alpha heavy chai	N/A	N/A	0.546	0.087	0.548	1e-153
Q9C0G6	4158	Dynein heavy chain 6, axo	no	N/A	0.545	0.097	0.438	1e-111
P23098	4466	Dynein beta chain, ciliar	N/A	N/A	0.539	0.089	0.44	1e-109
P39057	4466	Dynein beta chain, ciliar	N/A	N/A	0.539	0.089	0.44	1e-109
Q9NYC9	4486	Dynein heavy chain 9, axo	no	N/A	0.543	0.089	0.431	1e-107
P0C6F1	4456	Dynein heavy chain 2, axo	no	N/A	0.538	0.089	0.430	1e-106
Q69Z23	4481	Dynein heavy chain 17, ax	no	N/A	0.554	0.091	0.422	1e-105
Q9P225	4427	Dynein heavy chain 2, axo	no	N/A	0.538	0.090	0.424	1e-105
Q9P2D7	4330	Dynein heavy chain 1, axo	no	N/A	0.537	0.091	0.411	1e-105

>sp|Q8IVF4|DYH10_HUMAN Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4

 Score =  594 bits (1532), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 308/502 (61%), Positives = 346/502 (68%), Gaps = 97/502 (19%)

Query: 312  AKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEY 371
              I++A EF WESQLR+YW +      D L I QC+G+F YGYE               Y
Sbjct: 1758 GSILEAREFDWESQLRFYWDRE----PDELNIRQCTGTFGYGYE---------------Y 1798

Query: 372  MGLNGRLVITPLTDRIYLTITQALSMRLGAAPAG-------------------------- 405
            MGLNGRLVITPLTDRIYLT+TQALSM LG APAG                          
Sbjct: 1799 MGLNGRLVITPLTDRIYLTLTQALSMYLGGAPAGPAGTGKTETTKDLAKALGLLCVVTNC 1858

Query: 406  ---MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFE 462
               MD+ A GKI SGL+QCGAWGCFDEFNRID SVLSVIS+Q+ TIR AL+   T FQFE
Sbjct: 1859 GEGMDYRAVGKIFSGLAQCGAWGCFDEFNRIDASVLSVISSQIQTIRNALIHQLTTFQFE 1918

Query: 463  GHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEA 522
            G +I +++++GIFITMNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFLEA
Sbjct: 1919 GQEISLDSRMGIFITMNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLEA 1978

Query: 523  KVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRD 582
            K LAKKM VLYKL++EQLSKQ HYDFG+RALKSVLVMAGELKR +  L E VVLMRALRD
Sbjct: 1979 KTLAKKMTVLYKLAREQLSKQYHYDFGLRALKSVLVMAGELKRGSSDLREDVVLMRALRD 2038

Query: 583  MNLPKFVSED-----------------------------------------------VVQ 595
            MNLPKFV ED                                               VVQ
Sbjct: 2039 MNLPKFVFEDVPLFLGLISDLFPGLDCPRVRYPDFNDAVEQVLEENGYAVLPIQVDKVVQ 2098

Query: 596  MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP 655
            M+ETMLTRH+TM+VGPT GGKSVVIN L +  T LG   + Y LNPKAVSVIELYG+L+P
Sbjct: 2099 MFETMLTRHTTMVVGPTRGGKSVVINTLCQAQTKLGLTTKLYILNPKAVSVIELYGILDP 2158

Query: 656  ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANG 715
             TRDW DG+LSNIFR +NKP D   KERKYILFDGDVDALW+ENMNSVMDDN++LTLANG
Sbjct: 2159 TTRDWTDGVLSNIFREINKPTD--KKERKYILFDGDVDALWVENMNSVMDDNRLLTLANG 2216

Query: 716  ERIRLLAHCQLLFEIHPIQSDS 737
            ERIRL AHC LLFE+  +Q  S
Sbjct: 2217 ERIRLQAHCALLFEVGDLQYAS 2238

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly (By similarity). Probable inner arm dynein heavy chain.
Homo sapiens (taxid: 9606)

>sp|Q9SMH3|DYH1A_CHLRE Dynein-1-alpha heavy chain, flagellar inner arm I1 complex OS=Chlamydomonas reinhardtii GN=DHC1 PE=1 SV=1

 Score =  541 bits (1395), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 276/503 (54%), Positives = 332/503 (66%), Gaps = 98/503 (19%)

Query: 314  IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMG 373
            I+DA EF WESQLR+YW +     +D ++I QC+G F+YGYE               YMG
Sbjct: 1886 IVDAREFAWESQLRFYWDRQ----QDDILIRQCTGLFKYGYE---------------YMG 1926

Query: 374  LNGRLVITPLTDRIYLTITQALSMRLGAAPAG---------------------------- 405
            LNGRLVIT LTDR Y+T+T AL+ RLG APAG                            
Sbjct: 1927 LNGRLVITALTDRCYMTLTTALTYRLGGAPAGPAGTGKTETTKDLAKSMALLCVVFNCGE 1986

Query: 406  -MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGH 464
             +D+ A G I SGL QCGAWGCFDEFNRI+  VLSV+S+Q+  I+ AL  + TRFQFEG 
Sbjct: 1987 GLDYKAMGSIFSGLVQCGAWGCFDEFNRIEAEVLSVVSSQIKNIQEALKNDLTRFQFEGK 2046

Query: 465  DIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKV 524
            +I ++ + GIFITMNPGYAGRTELP+++KALFRPV  +VPD E IC+IMLFSEGF  AKV
Sbjct: 2047 EISIDPRTGIFITMNPGYAGRTELPDNLKALFRPVTMVVPDLEQICEIMLFSEGFDSAKV 2106

Query: 525  LAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMN 584
            LAKKM VLYKLS+EQLSKQ HYDFG+RALKSVLVMAG LKR A  + E +VLMRALRDMN
Sbjct: 2107 LAKKMTVLYKLSREQLSKQHHYDFGLRALKSVLVMAGSLKRGAPDMSEQLVLMRALRDMN 2166

Query: 585  LPKFVSED--------------------------------------------------VV 594
            LPKF+ +D                                                  VV
Sbjct: 2167 LPKFIFDDVPLFLGLINDLFPGMDCPRVRYPQFNDVVEADLADQGFKVLTEPSEQVDKVV 2226

Query: 595  QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLN 654
            Q+YE M+TRH+TM+VG TGGGK+V++N L +  T LG     YT+NPKA+SV ELYGVL+
Sbjct: 2227 QLYEVMMTRHTTMVVGQTGGGKTVILNTLARAQTKLGKKTHLYTINPKAISVAELYGVLD 2286

Query: 655  PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLAN 714
             +TRDW DGLLSNIFR +NKPL     E +Y++FDGDVDA+W+ENMNSVMDDNK+LTL N
Sbjct: 2287 KDTRDWTDGLLSNIFREMNKPLPAERDEARYLVFDGDVDAVWVENMNSVMDDNKLLTLPN 2346

Query: 715  GERIRLLAHCQLLFEIHPIQSDS 737
            GERIRL  HC+LLFE+  +Q  S
Sbjct: 2347 GERIRLQNHCKLLFEVFDLQYAS 2369

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for assembly of the I1 inner arm complex and its targeting to the appropriate axoneme location. Also required for phototaxis.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q9C0G6|DYH6_HUMAN Dynein heavy chain 6, axonemal OS=Homo sapiens GN=DNAH6 PE=1 SV=3

 Score =  403 bits (1035), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/511 (43%), Positives = 293/511 (57%), Gaps = 107/511 (20%)

Query: 312  AKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEY 371
            +K+   E F W+ QLRYYW    +D  + +  +  S                 + YGYEY
Sbjct: 1398 SKVETVESFDWQRQLRYYWD---IDLDNCVARMALS----------------QYTYGYEY 1438

Query: 372  MGLNGRLVITPLTDRIYLTITQALSMRLGAAPAG-------------------------- 405
            +G   RLVITPLTDR YL +  AL + LG APAG                          
Sbjct: 1439 LGACPRLVITPLTDRCYLCLMGALQLDLGGAPAGPAGTGKTETTKDLAKALAIQCVVFNC 1498

Query: 406  ---MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFE 462
               +D+   G+  SGL+Q GAW CFDEFNRID+ VLSVI+ QL+TIR A     +RF FE
Sbjct: 1499 SDGLDYKMMGRFFSGLAQSGAWCCFDEFNRIDIEVLSVIAQQLITIRNAKAAKLSRFMFE 1558

Query: 463  GHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEA 522
            G +I +      FITMNPGYAGRTELP+++KALFRP   +VP++ LI +++L+SEGF  +
Sbjct: 1559 GREIKLVMTCAAFITMNPGYAGRTELPDNLKALFRPFAMMVPNYALIAEVILYSEGFESS 1618

Query: 523  KVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRD 582
            K+LA+KM  +YKL  EQLS+Q HYDFGMRA+KSVLVMAG LKR    L E VVL+RAL+D
Sbjct: 1619 KILARKMTQMYKLCSEQLSQQDHYDFGMRAVKSVLVMAGSLKRENPDLNEDVVLIRALQD 1678

Query: 583  MNLPKFVSED-----------------------------------------------VVQ 595
             NLPKF+++D                                               V+Q
Sbjct: 1679 SNLPKFLTDDALLFSGIISDLFPGVQIPEHDYGILQSTIVDVMNRQNLQPEMCMVRKVIQ 1738

Query: 596  MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG--------YPA-RTYTLNPKAVSV 646
             YETML RH  M+VGPTGGGK+ V   L +T   L         Y A +TY LNPK++++
Sbjct: 1739 FYETMLVRHGVMLVGPTGGGKTTVYRILAETLGNLQKLGIENSFYQAVKTYVLNPKSITM 1798

Query: 647  IELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 706
             ELYG +N  T +W DGL++   RA    ++  S++ K+I+ DG VDALWIENMN+V+DD
Sbjct: 1799 GELYGEVNNLTLEWKDGLMALSVRAA---VNDTSEDHKWIISDGPVDALWIENMNTVLDD 1855

Query: 707  NKILTLANGERIRLLAHCQLLFEIHPIQSDS 737
            NK+L LAN ERI+L     +LFE+  ++  S
Sbjct: 1856 NKMLCLANSERIKLTPQIHMLFEVQDLRVAS 1886

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Homo sapiens (taxid: 9606)

>sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary OS=Tripneustes gratilla PE=1 SV=1

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/500 (44%), Positives = 286/500 (57%), Gaps = 100/500 (20%)

Query: 313  KIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGL-NGSFEYGYEY 371
            K+ +A+ FQW SQLR+ W                        +H Y  + +  F+Y YEY
Sbjct: 1779 KVDNAQAFQWLSQLRHRWADDD--------------------KHCYANICDAQFKYSYEY 1818

Query: 372  MGLNGRLVITPLTDRIYLTITQALSMRLGAAPAG-------------------------- 405
            +G   RLVITPLTDR Y+T+TQ+L + +  APAG                          
Sbjct: 1819 LGNTPRLVITPLTDRCYITLTQSLHLVMSGAPAGPAGTGKTETTKDLGRALGIMVYVFNC 1878

Query: 406  ---MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFE 462
               MD+ + G I  GLSQ GAWGCFDEFNRI V VLSV++ Q+  ++ A+     RF F 
Sbjct: 1879 SEQMDYKSCGNIYKGLSQTGAWGCFDEFNRISVEVLSVVAVQVKCVQDAIRDKKERFNFM 1938

Query: 463  GHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEA 522
            G +I +   VGIFITMNPGYAGRTELPE++KALFRP   +VPDFELIC+IML +EGFL+A
Sbjct: 1939 GEEISLIPSVGIFITMNPGYAGRTELPENLKALFRPCAMVVPDFELICEIMLVAEGFLDA 1998

Query: 523  KVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRD 582
            ++LA+K   LY L KE LSKQ HYD+G+RA+KSVLV+AG LKR   Q  E  VLMRALRD
Sbjct: 1999 RLLARKFITLYTLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGDPQRPEDQVLMRALRD 2058

Query: 583  MNLPKFVSED-----------------------------------------------VVQ 595
             N+PK VS+D                                               VVQ
Sbjct: 2059 FNVPKIVSDDTPVFMGLIGDLFPALDVPRRRDMDFEKVVKQSTLDLKLQAEDSFVLKVVQ 2118

Query: 596  MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP 655
            + E +  RHS  ++G  G GKS V+  L KT + +        LNPKAV+  EL+G++NP
Sbjct: 2119 LEELLAVRHSVFVIGNAGTGKSQVLKVLNKTYSNMKRKPVLVDLNPKAVTNDELFGIINP 2178

Query: 656  ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANG 715
             TR+W DGL S I R ++     G    K+I+ DGD+D +WIE++N+VMDDNK+LTLA+ 
Sbjct: 2179 ATREWKDGLFSVIMRDMSNITHDGP---KWIVLDGDIDPMWIESLNTVMDDNKVLTLASN 2235

Query: 716  ERIRLLAHCQLLFEIHPIQS 735
            ERI L    +LLFEI  +++
Sbjct: 2236 ERIPLTPSMRLLFEISHLKT 2255

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Tripneustes gratilla (taxid: 7673)

>sp|P39057|DYHC_HELCR Dynein beta chain, ciliary OS=Heliocidaris crassispina PE=1 SV=1

 Score =  397 bits (1020), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/500 (44%), Positives = 285/500 (57%), Gaps = 100/500 (20%)

Query: 313  KIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGL-NGSFEYGYEY 371
            K+  A+ FQW SQLR+ W                        +H Y  + +  F+Y YEY
Sbjct: 1779 KVDSAQAFQWLSQLRHRWADDD--------------------KHCYANICDAQFKYSYEY 1818

Query: 372  MGLNGRLVITPLTDRIYLTITQALSMRLGAAPAG-------------------------- 405
            +G   RLVITPLTDR Y+T+TQ+L + +  APAG                          
Sbjct: 1819 LGNTPRLVITPLTDRCYITLTQSLHLVMSGAPAGPAGTGKTETTKDLGRALGIMVYVFNC 1878

Query: 406  ---MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFE 462
               MD+ + G I  GL+Q GAWGCFDEFNRI V VLSV++ Q+  ++ A+     RF F 
Sbjct: 1879 SEQMDYKSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKCVQDAIRDKKERFNFM 1938

Query: 463  GHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEA 522
            G +I +   VGIFITMNPGYAGRTELPE++KALFRP   +VPDFELIC+IML +EGFLEA
Sbjct: 1939 GEEISLIPSVGIFITMNPGYAGRTELPENLKALFRPCAMVVPDFELICEIMLVAEGFLEA 1998

Query: 523  KVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRD 582
            ++LA+K   LY L KE LSKQ HYD+G+RA+KSVLV+AG LKR   Q  E  VLMRALRD
Sbjct: 1999 RLLARKFITLYTLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGDPQRPEDQVLMRALRD 2058

Query: 583  MNLPKFVSED-----------------------------------------------VVQ 595
             N+PK VS+D                                               VVQ
Sbjct: 2059 FNVPKIVSDDTPVFMGLIGDLFPALDVPRRRDLDFEKVVKQSTLDLKLQAEDSFVLKVVQ 2118

Query: 596  MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP 655
            + E +  RHS  ++G  G GKS V+  L KT + +        LNPKAV+  EL+G++NP
Sbjct: 2119 LEELLAVRHSVFVIGNAGTGKSQVLKVLNKTYSNMKRKPVFIDLNPKAVTNDELFGIINP 2178

Query: 656  ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANG 715
             TR+W DGL S I R ++     G    K+I+ DGD+D +WIE++N+VMDDNK+LTLA+ 
Sbjct: 2179 ATREWKDGLFSVIMRDMSNITHDGP---KWIVLDGDIDPMWIESLNTVMDDNKVLTLASN 2235

Query: 716  ERIRLLAHCQLLFEIHPIQS 735
            ERI L    +LLFEI  +++
Sbjct: 2236 ERIPLTPSMRLLFEISHLKT 2255

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Anthocidaris crassispina (taxid: 7629)

>sp|Q9NYC9|DYH9_HUMAN Dynein heavy chain 9, axonemal OS=Homo sapiens GN=DNAH9 PE=1 SV=3

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/501 (43%), Positives = 284/501 (56%), Gaps = 98/501 (19%)

Query: 311  AAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYE 370
            A K+ +A+ F W SQLR+ W            +  C  +            +  F Y YE
Sbjct: 1795 AQKVDNAQAFLWLSQLRHRWDDE---------VKHCFANI----------CDAQFLYSYE 1835

Query: 371  YMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAG------------------------- 405
            Y+G   RLVITPLTDR Y+T+TQ+L + +  APAG                         
Sbjct: 1836 YLGNTPRLVITPLTDRCYITLTQSLHLTMSGAPAGPAGTGKTETTKDLGRALGILVYVFN 1895

Query: 406  ----MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQF 461
                MD+ + G I  GL+Q GAWGCFDEFNRI V VLSV++ Q+ +I+ A+      F F
Sbjct: 1896 CSEQMDYKSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSIQDAIRDKKQWFSF 1955

Query: 462  EGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLE 521
             G +I +N  VGIFITMNPGYAGRTELPE++K+LFRP   +VPDFELIC+IML +EGF+E
Sbjct: 1956 LGEEISLNPSVGIFITMNPGYAGRTELPENLKSLFRPCAMVVPDFELICEIMLVAEGFIE 2015

Query: 522  AKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALR 581
            A+ LA+K   LY+L KE LSKQ HYD+G+RA+KSVLV+AG LKR      E  VLMR+LR
Sbjct: 2016 AQSLARKFITLYQLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGDPDRPEDQVLMRSLR 2075

Query: 582  DMNLPKFVSED-----------------------------------------------VV 594
            D N+PK V++D                                               VV
Sbjct: 2076 DFNIPKIVTDDMPIFMGLIGDLFPALDVPRRRDPNFEALVRKAIVDLKLQAEDNFVLKVV 2135

Query: 595  QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLN 654
            Q+ E +  RHS  +VG  G GKS V+ +L KT  ++        LNPKAV+  EL+G++N
Sbjct: 2136 QLEELLAVRHSVFVVGGAGTGKSQVLRSLHKTYQIMKRRPVWTDLNPKAVTNDELFGIIN 2195

Query: 655  PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLAN 714
            P T +W DGL S+I R +      G    K+IL DGD+D +WIE++N+VMDDNK+LTLA+
Sbjct: 2196 PATGEWKDGLFSSIMRELANITHDGP---KWILLDGDIDPMWIESLNTVMDDNKVLTLAS 2252

Query: 715  GERIRLLAHCQLLFEIHPIQS 735
             ERI L    +LLFEI  +++
Sbjct: 2253 NERIPLNPTMKLLFEISHLRT 2273

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Homo sapiens (taxid: 9606)

>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/504 (43%), Positives = 286/504 (56%), Gaps = 105/504 (20%)

Query: 310  FAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGY 369
            + + +MD   F W SQLR+YW+K      D  +I Q                N  F+YGY
Sbjct: 1756 YKSGLMDVSSFDWLSQLRFYWEKDV----DDCIIRQT---------------NTQFQYGY 1796

Query: 370  EYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAG------------------------ 405
            EY+G +GRLVITPLTDR Y+T+T AL +  G +P G                        
Sbjct: 1797 EYLGNSGRLVITPLTDRCYMTLTTALHLHRGGSPKGPAGTGKTETVKDLGKALGIYVIVV 1856

Query: 406  -----MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQ 460
                 +D+ + G++ SGL+Q GAWGCFDEFNRI++ VLSV++ Q+L+I +AL  N TRF 
Sbjct: 1857 NCSEGLDYKSMGRMYSGLAQSGAWGCFDEFNRINIEVLSVVAQQILSILSALTANLTRFY 1916

Query: 461  FEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFL 520
            FEG +I +    GIFITMNPGYAGRTELPE++K++FRP+  +VPD  LI +I+LF EGF 
Sbjct: 1917 FEGFEINLVWSCGIFITMNPGYAGRTELPENLKSMFRPIAMVVPDSTLIAEIILFGEGFG 1976

Query: 521  EAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRAL 580
              K+LAKK+  LY L+ +QLS+Q HYDFG+RAL S+L  AG+ +R    L +  VL+ ++
Sbjct: 1977 NCKILAKKVYTLYSLAVQQLSRQDHYDFGLRALTSLLRYAGKKRRLQPDLSDEEVLLLSM 2036

Query: 581  RDMNLPKFVSED-----------------------------------------------V 593
            RDMN+ K  S D                                               V
Sbjct: 2037 RDMNIAKLTSVDVPLFNAIVQDLFPNIELPVIDYGKLRDTIEQEIREMGLQITPFTLTKV 2096

Query: 594  VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL---GYP----ARTYTLNPKAVSV 646
            +Q+YET  +RHSTMIVG TG  K+     L  + T L   G P     R + LNPKA+S+
Sbjct: 2097 LQLYETKNSRHSTMIVGGTGSSKTTSWKILQASLTSLCRAGEPNYNIVREFPLNPKALSL 2156

Query: 647  IELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 706
             ELYG  +  T +W DG+LS++ R       P   + K+ILFDG VD LWIE+MNSVMDD
Sbjct: 2157 GELYGEYDLNTNEWTDGILSSVMRVACADEKP---DEKWILFDGPVDTLWIESMNSVMDD 2213

Query: 707  NKILTLANGERIRLLAHCQLLFEI 730
            NK+LTL NGERI +     LLFE+
Sbjct: 2214 NKVLTLINGERIAMPEQVSLLFEV 2237

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Mus musculus (taxid: 10090)

>sp|Q69Z23|DYH17_MOUSE Dynein heavy chain 17, axonemal OS=Mus musculus GN=Dnah17 PE=2 SV=2

 Score =  384 bits (986), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/514 (42%), Positives = 286/514 (55%), Gaps = 103/514 (20%)

Query: 302  AIQEHIVKFAAKIMDAEE---FQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEY 358
             I  H     AK++  E    F W+SQLR+ W +                      +H +
Sbjct: 1744 TIDVHARDVVAKMITVESSQAFTWQSQLRHRWDEEK--------------------KHCF 1783

Query: 359  MGL-NGSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAG------------ 405
              + +   +Y YEY+G   RLVITPLTDR Y+T+TQ+L + +G APAG            
Sbjct: 1784 ANICDAQIKYSYEYLGNTPRLVITPLTDRCYITLTQSLHLIMGGAPAGPAGTGKTETTKD 1843

Query: 406  -----------------MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTI 448
                             MD+ + G I  GL+Q GAWGCFDEFNRI V VLSVI+ Q+  +
Sbjct: 1844 LGRALGTMVYVFNCSEQMDYKSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVIAVQVKCV 1903

Query: 449  RTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFEL 508
            + A+     +F F G  I +   VGIFITMNPGYAGRTELPE++KALFRP   +VPDFEL
Sbjct: 1904 QDAIRAKKKKFNFLGEIISLVPTVGIFITMNPGYAGRTELPENLKALFRPCAMVVPDFEL 1963

Query: 509  ICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAAL 568
            IC+IML +EGFL+A++LA+K   LY L KE LSKQ HYD+G+RA+KSVLV+AG LKR   
Sbjct: 1964 ICEIMLVAEGFLDARLLARKFITLYTLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGDP 2023

Query: 569  QLEESVVLMRALRDMNLPKFVSED------------------------------------ 592
               E  VLMRALRD N+PK V++D                                    
Sbjct: 2024 TRAEDQVLMRALRDFNIPKIVTDDLPVFMGLIGDLFPALDVPRKRDLNFEKIIKQSIVEL 2083

Query: 593  -----------VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 641
                       VVQ+ E +  RHS  ++G  G GKS V+ +L KT   L        L+P
Sbjct: 2084 KLQAEDSFVLKVVQLEELLQVRHSVFVIGNAGSGKSQVLKSLNKTYQNLKRKPVAVDLDP 2143

Query: 642  KAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMN 701
            KAV+  EL+G++NP TR+W DGL S I R +      G    K+I+ DGD+D +WIE++N
Sbjct: 2144 KAVTCDELFGIINPATREWKDGLFSTIMRDLANLTHEGP---KWIVLDGDIDPMWIESLN 2200

Query: 702  SVMDDNKILTLANGERIRLLAHCQLLFEIHPIQS 735
            +VMDDNK+LTLA+ ERI L    +L+FEI  +++
Sbjct: 2201 TVMDDNKVLTLASNERIPLNRTMRLVFEISHLRT 2234

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Mus musculus (taxid: 10090)

>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/504 (42%), Positives = 283/504 (56%), Gaps = 105/504 (20%)

Query: 310  FAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGY 369
            + + +MD   F W SQLR+YW+K      D  VI Q                N  F+Y Y
Sbjct: 1727 YKSGLMDVNSFDWLSQLRFYWEKDL----DDCVIRQT---------------NTQFQYNY 1767

Query: 370  EYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAG------------------------ 405
            EY+G +GRLVITPLTDR Y+T+T AL +  G +P G                        
Sbjct: 1768 EYLGNSGRLVITPLTDRCYMTLTTALHLHRGGSPKGPAGTGKTETVKDLGKALGIYVIVV 1827

Query: 406  -----MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQ 460
                 +D+ + G++ SGL+Q GAWGCFDEFNRI++ VLSV++ Q+L I +AL    T F 
Sbjct: 1828 NCSEGLDYKSMGRMYSGLAQTGAWGCFDEFNRINIEVLSVVAHQILCILSALAAGLTHFH 1887

Query: 461  FEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFL 520
            F+G +I +    GIFITMNPGYAGRTELPE++K++FRP+  +VPD  LI +I+LF EGF 
Sbjct: 1888 FDGFEINLVWSCGIFITMNPGYAGRTELPENLKSMFRPIAMVVPDSTLIAEIILFGEGFG 1947

Query: 521  EAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRAL 580
              K+LAKK+  LY L+ +QLS+Q HYDFG+RAL S+L  AG+ +R    L +  VL+ ++
Sbjct: 1948 NCKILAKKVYTLYSLAVQQLSRQDHYDFGLRALTSLLRYAGKKRRLQPDLTDEEVLLLSM 2007

Query: 581  RDMNLPKFVSED-----------------------------------------------V 593
            RDMN+ K  S D                                               V
Sbjct: 2008 RDMNIAKLTSVDAPLFNAIVQDLFPNIELPVIDYGKLRETVEQEIRDMGLQSTPFTLTKV 2067

Query: 594  VQMYETMLTRHSTMIVGPTGGGKSV---VINALVKTSTVLGYP----ARTYTLNPKAVSV 646
             Q+YET  +RHSTMIVG TG GK+    ++ A + +    G P     R + LNPKA+S+
Sbjct: 2068 FQLYETKNSRHSTMIVGCTGSGKTASWRILQASLSSLCRAGDPNFNIVREFPLNPKALSL 2127

Query: 647  IELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 706
             ELYG  +  T +W DG+LS++ R       P   + K+ILFDG VD LWIENMNSVMDD
Sbjct: 2128 GELYGEYDLSTNEWTDGILSSVMRTACADEKP---DEKWILFDGPVDTLWIENMNSVMDD 2184

Query: 707  NKILTLANGERIRLLAHCQLLFEI 730
            NK+LTL NGERI +     LLFE+
Sbjct: 2185 NKVLTLINGERIAMPEQVSLLFEV 2208

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|Q9P2D7|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/515 (41%), Positives = 283/515 (54%), Gaps = 117/515 (22%)

Query: 303  IQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLN 362
            IQE++V          +FQW SQLRYYW  + L  +                      +N
Sbjct: 1507 IQENVV-------SVNDFQWISQLRYYWTNNDLYIR---------------------AVN 1538

Query: 363  GSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAG----------------- 405
              F YGYEY+G +GRLVITPLTDR YLT+T AL ++ G APAG                 
Sbjct: 1539 AEFIYGYEYLGNSGRLVITPLTDRCYLTLTGALHLKFGGAPAGPAGTGKTETTKDLGKAL 1598

Query: 406  ------------MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALL 453
                        +DF+A GK   GL+  GAW CFDEFNRID+ VLSV++ Q+ TI+ A  
Sbjct: 1599 AIQTVVFNCSDQLDFMAMGKFFKGLASAGAWACFDEFNRIDIEVLSVVAQQITTIQKAQQ 1658

Query: 454  INATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIM 513
                RF FEG +I +     +FITMNPGYAGRTELP+++KALFRPV  +VPD+ +I +I 
Sbjct: 1659 QRVERFMFEGVEIPLVPSCAVFITMNPGYAGRTELPDNLKALFRPVAMMVPDYAMITEIS 1718

Query: 514  LFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEES 573
            L+S GF EA VLAKK+   +KLS EQLS Q HYDFGMRA+K+V+  AG LKR    + E 
Sbjct: 1719 LYSFGFNEASVLAKKITTTFKLSSEQLSSQDHYDFGMRAVKTVISAAGNLKRENPSMNEE 1778

Query: 574  VVLMRALRDMNLPKFVSEDV---------------------------------------- 593
            ++ +RA+RD+N+PKF+ ED+                                        
Sbjct: 1779 LICLRAIRDVNVPKFLQEDLKLFSGIVSDLFPTIKEEDTDYGILDEAIREACRNSNLKDV 1838

Query: 594  -------VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPART--------- 636
                   +Q+YET + RH  M+VGPTG GKS     L    T L G P+ +         
Sbjct: 1839 EGFLTKCIQLYETTVVRHGLMLVGPTGSGKSTCYRVLAAAMTSLKGQPSISGGMYEAVNY 1898

Query: 637  YTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALW 696
            Y LNPK++++ +LYG  +  T +W DG+ S+  RA     D     +K+ +FDG VDA+W
Sbjct: 1899 YVLNPKSITMGQLYGEFDLLTHEWTDGIFSSFIRAGAITSD---TNKKWYMFDGPVDAIW 1955

Query: 697  IENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731
            IENMN+V+DDNK L L++GE I+L     ++FE+ 
Sbjct: 1956 IENMNTVLDDNKKLCLSSGEIIKLTEAMTMMFEVQ 1990

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	741
242015590	4870	ciliary dynein heavy chain, putative [Pe	0.534	0.081	0.628	1e-170
328717563	3313	PREDICTED: dynein heavy chain 10, axonem	0.537	0.120	0.624	1e-169
443721104	4363	hypothetical protein CAPTEDRAFT_221643 [	0.539	0.091	0.617	1e-169
292613807	4559	PREDICTED: dynein heavy chain 10, axonem	0.543	0.088	0.618	1e-169
383849047	4926	PREDICTED: dynein heavy chain 10, axonem	0.546	0.082	0.614	1e-169
345490720	4875	PREDICTED: dynein heavy chain 10, axonem	0.546	0.083	0.624	1e-169
410923098	4484	PREDICTED: dynein heavy chain 10, axonem	0.534	0.088	0.618	1e-168
291230734	4610	PREDICTED: predicted protein-like [Sacco	0.543	0.087	0.62	1e-168
449476739	4480	PREDICTED: LOW QUALITY PROTEIN: dynein h	0.543	0.089	0.615	1e-168
194214400	4500	PREDICTED: dynein heavy chain 10, axonem	0.546	0.09	0.617	1e-168

>gi|242015590|ref|XP_002428436.1| ciliary dynein heavy chain, putative [Pediculus humanus corporis] gi|212513048|gb|EEB15698.1| ciliary dynein heavy chain, putative [Pediculus humanus corporis]

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 310/493 (62%), Positives = 347/493 (70%), Gaps = 97/493 (19%)

Query: 314  IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMG 373
            I D++EF+WESQLR+YW K      D+L++ QC+G FEYGY               EYMG
Sbjct: 2152 ITDSQEFEWESQLRFYWIKE----ADNLMVKQCTGIFEYGY---------------EYMG 2192

Query: 374  LNGRLVITPLTDRIYLTITQALSMRLGAAPAG---------------------------- 405
            LNGRLVITPLTDRIYLTITQALSM+LG APAG                            
Sbjct: 2193 LNGRLVITPLTDRIYLTITQALSMQLGGAPAGPAGTGKTETTKDLAKALGLLCMVTNCGE 2252

Query: 406  -MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGH 464
             MD  AFGKIL+GL QCGAWGCFDEFNRID+SVLSVISTQL TIR A L+   +F FE  
Sbjct: 2253 GMDHKAFGKILNGLCQCGAWGCFDEFNRIDISVLSVISTQLQTIRNAKLLKLKKFNFENQ 2312

Query: 465  DIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKV 524
            +I +++KVGIF+TMNPGYAGRTELPESVKALFRPVVCIVPD E+IC IMLFSEGFLEAK+
Sbjct: 2313 EITLDSKVGIFVTMNPGYAGRTELPESVKALFRPVVCIVPDLEMICLIMLFSEGFLEAKI 2372

Query: 525  LAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMN 584
            LAKKM VLYKL++EQLSKQ HYDFG+RALKSVLVMAGELKR A +L E VVLMRALRDMN
Sbjct: 2373 LAKKMTVLYKLAQEQLSKQSHYDFGLRALKSVLVMAGELKRGAQELPEDVVLMRALRDMN 2432

Query: 585  LPKFVSED-----------------------------------------------VVQMY 597
            LPKF+ +D                                               VVQMY
Sbjct: 2433 LPKFIFDDVPLFLGLITDLFPGLECPRVGYPNFNAAVEKALREDNYEILPDQMDKVVQMY 2492

Query: 598  ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET 657
            ETM+TRHSTMIVGPTGGGK+VVI  L K  T L  P + Y LNPKA SV ELYGVL+P T
Sbjct: 2493 ETMMTRHSTMIVGPTGGGKTVVIQTLQKAQTALDLPTKLYVLNPKACSVTELYGVLDPVT 2552

Query: 658  RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGER 717
            RDW DGLLS IFR +NKP++  + ER+YILFDGDVDALWIENMNSVMDDNK+LTLANGER
Sbjct: 2553 RDWTDGLLSCIFREINKPIE--NPERRYILFDGDVDALWIENMNSVMDDNKLLTLANGER 2610

Query: 718  IRLLAHCQLLFEI 730
            IRLL HC LLFE+
Sbjct: 2611 IRLLPHCALLFEV 2623

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328717563|ref|XP_003246241.1| PREDICTED: dynein heavy chain 10, axonemal-like [Acyrthosiphon pisum]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 308/493 (62%), Positives = 344/493 (69%), Gaps = 95/493 (19%)

Query: 314  IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMG 373
            I+ ++EF+WESQLR+YWKK+     D+L+I QCSG+F YGY+               YMG
Sbjct: 599  IIKSQEFEWESQLRFYWKKNV----DNLIIDQCSGTFSYGYD---------------YMG 639

Query: 374  LNGRLVITPLTDRIYLTITQALSMRLGAAPAG---------------------------- 405
            LNGRLVITPLTDRIYLTITQALSM+LG APAG                            
Sbjct: 640  LNGRLVITPLTDRIYLTITQALSMQLGCAPAGPAGTGKTETVKDLAKALGILCMVTNCGE 699

Query: 406  -MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGH 464
             MDF AFG IL GL QCGAWGCFDEFNRID+SVLSVISTQL TIR AL+     F F G 
Sbjct: 700  GMDFQAFGMILDGLCQCGAWGCFDEFNRIDISVLSVISTQLGTIRNALVEKKKMFLFRGR 759

Query: 465  DIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKV 524
            D I++NKVGIFITMNPGYAGRTELPES+K LFRPVVC++PD ELIC IMLFSEGFL AKV
Sbjct: 760  DTILDNKVGIFITMNPGYAGRTELPESLKTLFRPVVCVLPDLELICLIMLFSEGFLNAKV 819

Query: 525  LAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMN 584
            LAKKMAVLY L++EQLSKQ HYDFG+RALKSVLV+AGELKR A  L+E+VVLMRALRDMN
Sbjct: 820  LAKKMAVLYSLAREQLSKQSHYDFGLRALKSVLVIAGELKRNAPNLDENVVLMRALRDMN 879

Query: 585  LPKFVSED-----------------------------------------------VVQMY 597
            LPKFV +D                                               V Q+Y
Sbjct: 880  LPKFVYDDVPLFLGLIADLFPGLKCHRVTYPEFNNAIEEELRKKYYLPLENQVDKVTQLY 939

Query: 598  ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET 657
            ETM+TRHSTM+VGPTGGGK+VVIN LV   T LG P   YTLNPKA +V+ELYG  N  T
Sbjct: 940  ETMMTRHSTMVVGPTGGGKTVVINTLVNAQTSLGLPTTLYTLNPKACTVVELYGFFNLVT 999

Query: 658  RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGER 717
            RDW DGLLSNIFR +NKP+     ER+YILFDGDVDALWIENMNSVMDDNK+LTLANGER
Sbjct: 1000 RDWTDGLLSNIFREINKPIPEDKPERRYILFDGDVDALWIENMNSVMDDNKLLTLANGER 1059

Query: 718  IRLLAHCQLLFEI 730
            IRLL HC LLFE+
Sbjct: 1060 IRLLPHCALLFEV 1072

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443721104|gb|ELU10552.1| hypothetical protein CAPTEDRAFT_221643 [Capitella teleta]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 307/497 (61%), Positives = 347/497 (69%), Gaps = 97/497 (19%)

Query: 314  IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMG 373
            I+DA EF+WESQLR+YW K      D L++ QC+G F YGYE               YMG
Sbjct: 1704 ILDAREFEWESQLRFYWVKE----PDELIMRQCTGEFGYGYE---------------YMG 1744

Query: 374  LNGRLVITPLTDRIYLTITQALSMRLGAAPAG---------------------------- 405
            LNGRLVITPLTDRIYLT+TQALSM+LG APAG                            
Sbjct: 1745 LNGRLVITPLTDRIYLTLTQALSMKLGGAPAGPAGTGKTETVKDLAKALGLLCVVTNCGE 1804

Query: 406  -MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGH 464
             MDF A GKI SGL QCGAWGCFDEFNRID+SVLSVISTQL TIR ALL+N  +F FEG 
Sbjct: 1805 GMDFKAVGKIFSGLCQCGAWGCFDEFNRIDISVLSVISTQLNTIRNALLMNLKKFHFEGQ 1864

Query: 465  DIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKV 524
            +I M+ +VGIFITMNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFL AKV
Sbjct: 1865 EISMDCRVGIFITMNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLMAKV 1924

Query: 525  LAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMN 584
            LAKKM VLYKL+KEQLSKQ HYDFG+RALKSVLVMAGELKR + +L E VVLMRALRDMN
Sbjct: 1925 LAKKMTVLYKLAKEQLSKQYHYDFGLRALKSVLVMAGELKRGSAELPEDVVLMRALRDMN 1984

Query: 585  LPKFVSED-----------------------------------------------VVQMY 597
            LPKFV ED                                               VVQ+Y
Sbjct: 1985 LPKFVFEDVPLFLGLISDLFPGLDCPRVRYPNFNDAVEEVLEKNRYVLLPQQADKVVQLY 2044

Query: 598  ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET 657
            ETM+TRH+TM+VGPTGGGKSVVI  L ++ T LG P + +T+NPK  SV+ELYG+L+P T
Sbjct: 2045 ETMMTRHTTMVVGPTGGGKSVVIKTLAESQTKLGLPTKMFTINPKDRSVVELYGILDPNT 2104

Query: 658  RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGER 717
            RDW DGLLSNIFR +N+P D    ERKYI+FDGDVDALW+ENMNSVMDDN++LTLANGER
Sbjct: 2105 RDWTDGLLSNIFREINRPTD--KNERKYIVFDGDVDALWVENMNSVMDDNRLLTLANGER 2162

Query: 718  IRLLAHCQLLFEIHPIQ 734
            IRL  HC LLFE+  +Q
Sbjct: 2163 IRLQKHCALLFEVFDLQ 2179

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|292613807|ref|XP_698507.4| PREDICTED: dynein heavy chain 10, axonemal [Danio rerio]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 309/500 (61%), Positives = 350/500 (70%), Gaps = 97/500 (19%)

Query: 314  IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMG 373
            I DA EF+WESQLR+YW K      D L + QCS  F YGYE               YMG
Sbjct: 1850 ITDAREFEWESQLRFYWVKE----PDELFVRQCSAQFCYGYE---------------YMG 1890

Query: 374  LNGRLVITPLTDRIYLTITQALSMRLGAAPAG---------------------------- 405
            LNGRLVITPLTDRIYLT+TQALSM LG APAG                            
Sbjct: 1891 LNGRLVITPLTDRIYLTLTQALSMFLGGAPAGPAGTGKTESTKDLAKALGLLCVVTNCGE 1950

Query: 406  -MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGH 464
             MD++A GKILSGL+QCGAWGCFDEFNRID SVLSVIS+Q+ TIR AL+++  RF FEG 
Sbjct: 1951 GMDYMAVGKILSGLAQCGAWGCFDEFNRIDASVLSVISSQIQTIRNALMLHLQRFHFEGQ 2010

Query: 465  DIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKV 524
            +I ++N++GIFITMNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFL AKV
Sbjct: 2011 EISLDNRIGIFITMNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLVAKV 2070

Query: 525  LAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMN 584
            LAKKM VLYKL++EQLSKQ HYDFG+RALKSVLVMAGELKR +  L E VVLMRALRDMN
Sbjct: 2071 LAKKMTVLYKLAREQLSKQSHYDFGLRALKSVLVMAGELKRGSPNLSEDVVLMRALRDMN 2130

Query: 585  LPKFVSED-----------------------------------------------VVQMY 597
            LPKFV ED                                               VVQMY
Sbjct: 2131 LPKFVFEDVPLFLGLISDLFPGLDCPRVRYPSFNDAVEAILEENRYIMMPSQVDKVVQMY 2190

Query: 598  ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET 657
            ETM+TRH+TM+VGPTGGGKSVVIN L ++ T LG   + Y+LNPKA+SVIELYG+L+P T
Sbjct: 2191 ETMMTRHTTMVVGPTGGGKSVVINTLCQSQTRLGLLTKLYSLNPKAMSVIELYGILDPVT 2250

Query: 658  RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGER 717
            RDW DG+LSNIFR +NKP D   KER+YILFDGDVDALW+ENMNSVMDDNK+LTLANGER
Sbjct: 2251 RDWTDGILSNIFRDINKPTD--KKERRYILFDGDVDALWVENMNSVMDDNKLLTLANGER 2308

Query: 718  IRLLAHCQLLFEIHPIQSDS 737
            IRL +HC LLFE+  +Q  S
Sbjct: 2309 IRLQSHCALLFEVGDLQYAS 2328

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383849047|ref|XP_003700158.1| PREDICTED: dynein heavy chain 10, axonemal-like [Megachile rotundata]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 307/500 (61%), Positives = 348/500 (69%), Gaps = 95/500 (19%)

Query: 314  IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMG 373
            IMD  EF+WESQLR+YW        D++ I QC+G+FEYG               YEYMG
Sbjct: 2188 IMDPAEFEWESQLRFYWVHDL----DNVWIHQCTGTFEYG---------------YEYMG 2228

Query: 374  LNGRLVITPLTDRIYLTITQALSMRLGAAPAG---------------------------- 405
            LNGRLV+TPLTDRIYLTITQALSM+LG APAG                            
Sbjct: 2229 LNGRLVVTPLTDRIYLTITQALSMQLGGAPAGPAGTGKTETTKDLAKALGLLCIVTNCGE 2288

Query: 406  -MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGH 464
             MD++A GK LSGL+QCGAWGCFDEFNRID+SVLSVISTQL TIR+AL+ NA+RF FEG 
Sbjct: 2289 GMDYVAIGKTLSGLAQCGAWGCFDEFNRIDISVLSVISTQLQTIRSALIANASRFMFEGQ 2348

Query: 465  DIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKV 524
            DI+++ KVGIFITMNPGYAGRTELPESVKALFRPVVCIVPD ELICQI LFS GFL AKV
Sbjct: 2349 DIVLDTKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDNELICQIKLFSSGFLTAKV 2408

Query: 525  LAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMN 584
            LAKKM VLYKL++EQLSKQ HYDFG+RALKSVL MAG+LKR +  L E+VVLMRALRDMN
Sbjct: 2409 LAKKMTVLYKLAREQLSKQNHYDFGLRALKSVLNMAGQLKRTSGDLPENVVLMRALRDMN 2468

Query: 585  LPKFVSED-----------------------------------------------VVQMY 597
            LPKF+ +D                                               VVQ+Y
Sbjct: 2469 LPKFIFDDVPLFLGLIADLFPDLDCPRVHYPDFNEAVNLVLEQQGYSILPIQVDKVVQLY 2528

Query: 598  ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET 657
            E M+TRHSTM+VGPTGGGK+VVI  L K  T L  P + YTLNPKA +V ELYGVL+P T
Sbjct: 2529 EVMMTRHSTMVVGPTGGGKTVVIETLCKAQTYLDRPTKLYTLNPKACTVNELYGVLDPAT 2588

Query: 658  RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGER 717
            RDW DGLLS IFR VN+PL+    ER+YILFDGDVDALWIENMNSVMDDNK+LTLAN ER
Sbjct: 2589 RDWTDGLLSKIFREVNRPLETDKDERRYILFDGDVDALWIENMNSVMDDNKLLTLANQER 2648

Query: 718  IRLLAHCQLLFEIHPIQSDS 737
            I++  HC LLFE+  +Q  S
Sbjct: 2649 IKMQNHCSLLFEVGDLQYAS 2668

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490720|ref|XP_001601632.2| PREDICTED: dynein heavy chain 10, axonemal [Nasonia vitripennis]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 312/500 (62%), Positives = 345/500 (69%), Gaps = 95/500 (19%)

Query: 314  IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMG 373
            IMDA EF+WESQLR+YW        D++ + QC+GSFEYG               YEYMG
Sbjct: 2135 IMDAMEFEWESQLRFYWVHDL----DNVWMHQCTGSFEYG---------------YEYMG 2175

Query: 374  LNGRLVITPLTDRIYLTITQALSMRLGAAPAG---------------------------- 405
            LNGRLV+TPLTDRIYLTITQALSM LG APAG                            
Sbjct: 2176 LNGRLVVTPLTDRIYLTITQALSMHLGGAPAGPAGTGKTETTKDLAKALGLLCIVTNCGE 2235

Query: 406  -MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGH 464
             MD++A GK L GL+QCGAWGCFDEFNRIDVSVLSVISTQL TIR+AL   ATRF FE  
Sbjct: 2236 GMDYVAIGKTLGGLAQCGAWGCFDEFNRIDVSVLSVISTQLQTIRSALQSKATRFMFENQ 2295

Query: 465  DIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKV 524
            DI +++KVGIFITMNPGYAGRTELPESVKALFRPVVCIVPD ELICQI LFS GFL AKV
Sbjct: 2296 DITLDSKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDNELICQIKLFSAGFLTAKV 2355

Query: 525  LAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMN 584
            LAKKM VLY L++EQLSKQ HYDFG+RALKSVL MAG+LKR +  L E VVLMRALRDMN
Sbjct: 2356 LAKKMTVLYNLAREQLSKQTHYDFGLRALKSVLNMAGQLKRTSGNLPEDVVLMRALRDMN 2415

Query: 585  LPKFVSED-----------------------------------------------VVQMY 597
            LPKF+ ED                                               VVQ+Y
Sbjct: 2416 LPKFIFEDVPLFLGLIKDLFPGLDCPRVRYPDFNDAVEKALRDKGYAIIPDQVDKVVQLY 2475

Query: 598  ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET 657
            E M+TRHSTMIVGPTGGGK+VVI AL    T+LG P++ Y LNPKA +VIELYGVL+  T
Sbjct: 2476 EVMMTRHSTMIVGPTGGGKTVVIQALCDAQTLLGKPSKLYILNPKACTVIELYGVLDHTT 2535

Query: 658  RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGER 717
            RDW DGLLSNIFR VNKPLD    E+KYILFDGDVDALWIENMNSVMDDNK+LTLAN ER
Sbjct: 2536 RDWTDGLLSNIFREVNKPLDSNVDEKKYILFDGDVDALWIENMNSVMDDNKLLTLANQER 2595

Query: 718  IRLLAHCQLLFEIHPIQSDS 737
            I+L  HC LLFE+  +Q  S
Sbjct: 2596 IKLQDHCNLLFEVGDLQYAS 2615

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410923098|ref|XP_003975019.1| PREDICTED: dynein heavy chain 10, axonemal-like [Takifugu rubripes]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 305/493 (61%), Positives = 348/493 (70%), Gaps = 97/493 (19%)

Query: 314  IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMG 373
            IMDA+EF+WESQL++YW++     +D L + QCS SF YGYE               YMG
Sbjct: 1800 IMDAQEFEWESQLKFYWEQD----RDDLFVHQCSASFSYGYE---------------YMG 1840

Query: 374  LNGRLVITPLTDRIYLTITQALSMRLGAAPAG---------------------------- 405
            LNGRLVITPLTDRIYLTITQALSM LG APAG                            
Sbjct: 1841 LNGRLVITPLTDRIYLTITQALSMYLGGAPAGPAGTGKTESTKDLAKALGLLCMVTNCGE 1900

Query: 406  -MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGH 464
             MD+LA GKI SGL+QCGAWGCFDEFNRID SVLSVIS+Q+ TIR AL++N  RF FEG 
Sbjct: 1901 GMDYLAMGKIFSGLAQCGAWGCFDEFNRIDASVLSVISSQIQTIRHALILNLKRFNFEGK 1960

Query: 465  DIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKV 524
            +I ++ ++GIFITMNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLF EGFL AKV
Sbjct: 1961 EISLDGRMGIFITMNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFCEGFLMAKV 2020

Query: 525  LAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMN 584
            LAKKM VLYKL++EQLSKQ HYDFG+RALKSVLVMAGELKR +  L E VVLMRALRDMN
Sbjct: 2021 LAKKMTVLYKLAREQLSKQSHYDFGLRALKSVLVMAGELKRGSPDLSEDVVLMRALRDMN 2080

Query: 585  LPKFVSED-----------------------------------------------VVQMY 597
            LPKFV ED                                               VVQMY
Sbjct: 2081 LPKFVFEDVPLFLGLISDLFPGLDCPRVRYPNFNDAVEQILQENNYVILPNQVDKVVQMY 2140

Query: 598  ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET 657
            ETM+TRH+TM+VGPTGGGKSVVI+ L +  T LG   + + LNPKA+SVIELYGVL+P+T
Sbjct: 2141 ETMMTRHTTMVVGPTGGGKSVVISTLCQAQTKLGLQTKMFPLNPKAMSVIELYGVLDPDT 2200

Query: 658  RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGER 717
            RDW DG+LSNIFR +NKP D   +ER+YILFDGDVDALW+ENMNSVMDDNK+LTLANGER
Sbjct: 2201 RDWTDGILSNIFRDINKPTD--KQERRYILFDGDVDALWVENMNSVMDDNKLLTLANGER 2258

Query: 718  IRLLAHCQLLFEI 730
            IRL +HC LLFE+
Sbjct: 2259 IRLQSHCALLFEV 2271

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291230734|ref|XP_002735320.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 310/500 (62%), Positives = 349/500 (69%), Gaps = 97/500 (19%)

Query: 314  IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMG 373
            IMD  EF+WESQLR+YW K      D L + QC+G+F YGYE               YMG
Sbjct: 1925 IMDYREFEWESQLRFYWDKE----PDELNVRQCTGTFGYGYE---------------YMG 1965

Query: 374  LNGRLVITPLTDRIYLTITQALSMRLGAAPAG---------------------------- 405
            LNGRLVITPLTDRIYLT+TQALSM+LG APAG                            
Sbjct: 1966 LNGRLVITPLTDRIYLTLTQALSMQLGGAPAGPAGTGKTETTKDLAKALGLLCVVTNCGE 2025

Query: 406  -MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGH 464
             MD+ A GKI SGL QCGAWGCFDEFNRIDVSVLSVIS+Q+ TIR AL+ +  +FQFEG 
Sbjct: 2026 GMDYKAVGKIFSGLCQCGAWGCFDEFNRIDVSVLSVISSQIQTIRNALIHHLKKFQFEGS 2085

Query: 465  DIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKV 524
            +I M++++GIFITMNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFL AKV
Sbjct: 2086 EIAMDDRMGIFITMNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLLAKV 2145

Query: 525  LAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMN 584
            LAKKM VLYKL+KEQLSKQ HYDFG+RALKSVLVMAGELKR++ +L E VVLMRALRDMN
Sbjct: 2146 LAKKMTVLYKLAKEQLSKQHHYDFGLRALKSVLVMAGELKRSSAELPEDVVLMRALRDMN 2205

Query: 585  LPKFVSED-----------------------------------------------VVQMY 597
            LPKFV ED                                               VVQ+Y
Sbjct: 2206 LPKFVYEDVPLFLGLISDLFPGLDVPRVRYPNFNDAVEQGLLDNNYVMLPQQVDKVVQLY 2265

Query: 598  ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET 657
            ETMLTRH+TM+VGPTGGGKSVVIN L +  T LG   + Y LNPKA+SVIELYG+L+P T
Sbjct: 2266 ETMLTRHTTMVVGPTGGGKSVVINGLSQAQTRLGLLTKLYILNPKAMSVIELYGILDPMT 2325

Query: 658  RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGER 717
            RDW DGLLSNIFR +NKP D    ERKYILFDGDVDALW+ENMNSVMDDNK+LTLANGER
Sbjct: 2326 RDWTDGLLSNIFRDINKPTD--KNERKYILFDGDVDALWVENMNSVMDDNKLLTLANGER 2383

Query: 718  IRLLAHCQLLFEIHPIQSDS 737
            IRL  HC +LFE+  +Q  S
Sbjct: 2384 IRLQKHCAMLFEVADLQYAS 2403

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|449476739|ref|XP_004176474.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 10, axonemal [Taeniopygia guttata]

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 307/499 (61%), Positives = 350/499 (70%), Gaps = 96/499 (19%)

Query: 314  IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMG 373
            I+ A+EF+WESQLR+YW++      D L++ QC+G+F YGY               EYMG
Sbjct: 1852 ILQAQEFEWESQLRFYWERE----PDELMVRQCTGAFSYGY---------------EYMG 1892

Query: 374  LNGRLVITPLTDRIYLTITQALSMRLGAAPA----------------------------G 405
            LNGRLVITPLTDRIYLT+TQALSM LG APA                            G
Sbjct: 1893 LNGRLVITPLTDRIYLTLTQALSMFLGGAPAGQQVQGDRNNQDLVKALACCGVVTNCGEG 1952

Query: 406  MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHD 465
            MDF A GKI SGL+QCGAWGCFDEFNRID SVLSVIS+Q+ TIR AL+   TRFQFEG +
Sbjct: 1953 MDFKAMGKIFSGLAQCGAWGCFDEFNRIDASVLSVISSQIQTIRNALINGWTRFQFEGQE 2012

Query: 466  IIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVL 525
            I +++++GIFITMNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFL AKVL
Sbjct: 2013 ISLDSRIGIFITMNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLTAKVL 2072

Query: 526  AKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNL 585
            AKKM VLYKL++EQLSKQ HYDFG+RALKSVLVMAGELKR +  L E VVLMRALRDMNL
Sbjct: 2073 AKKMTVLYKLAREQLSKQHHYDFGLRALKSVLVMAGELKRGSADLSEDVVLMRALRDMNL 2132

Query: 586  PKFVSED-----------------------------------------------VVQMYE 598
            PKFV ED                                               VVQMYE
Sbjct: 2133 PKFVFEDVPLFLGLISDLFPGLDCPRVRYPDFNDAVEQVLEERGYIVLPVQVDKVVQMYE 2192

Query: 599  TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETR 658
            TMLTRH+TM+VGPTGGGK+VVI  L +    LG   + YTLNPKA+SVIELYG+L+P TR
Sbjct: 2193 TMLTRHTTMVVGPTGGGKTVVIKTLCQAQNKLGLLTKLYTLNPKAMSVIELYGILDPVTR 2252

Query: 659  DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERI 718
            DW DG+LSNIFR +N+P D   KER+YILFDGDVDALW+ENMNSVMDDNK+LTLANGERI
Sbjct: 2253 DWTDGVLSNIFRDINRPTD--KKERRYILFDGDVDALWVENMNSVMDDNKLLTLANGERI 2310

Query: 719  RLLAHCQLLFEIHPIQSDS 737
            RL AHC LLFE+  +Q  S
Sbjct: 2311 RLQAHCALLFEVGDLQYAS 2329

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194214400|ref|XP_001915485.1| PREDICTED: dynein heavy chain 10, axonemal [Equus caballus]

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 310/502 (61%), Positives = 350/502 (69%), Gaps = 97/502 (19%)

Query: 312  AKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEY 371
              I++A EF+WESQLR+YW +      D L I QC+G+F YGYE               Y
Sbjct: 1787 GSILEAREFEWESQLRFYWGRE----PDELTIRQCTGTFGYGYE---------------Y 1827

Query: 372  MGLNGRLVITPLTDRIYLTITQALSMRLGAAPAG-------------------------- 405
            MGLNGRLVITPLTDRIYLT+TQALSM LG APAG                          
Sbjct: 1828 MGLNGRLVITPLTDRIYLTLTQALSMYLGGAPAGPAGTGKTETTKDLAKALGLLCVVTNC 1887

Query: 406  ---MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFE 462
               MD+ A GKILSGL+QCGAWGCFDEFNRID SVLSVIS+Q+ TIR AL+   T FQFE
Sbjct: 1888 GEGMDYKAVGKILSGLAQCGAWGCFDEFNRIDASVLSVISSQIQTIRNALIHQLTTFQFE 1947

Query: 463  GHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEA 522
            G +I +++++GIFITMNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFL A
Sbjct: 1948 GQEISLDSRMGIFITMNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLWA 2007

Query: 523  KVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRD 582
            K LAKKM VLYKL++EQLSKQ HYDFG+RALKSVLVMAGELKR + +L E VVLMRALRD
Sbjct: 2008 KTLAKKMTVLYKLAREQLSKQHHYDFGLRALKSVLVMAGELKRGSSELREDVVLMRALRD 2067

Query: 583  MNLPKFVSED-----------------------------------------------VVQ 595
            MNLPKFV ED                                               VVQ
Sbjct: 2068 MNLPKFVFEDVPLFLGLISDLFPGLDCPRVRYPDFNDAVEQVLEESGYVVLPVQVDKVVQ 2127

Query: 596  MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP 655
            M+ETMLTRH+TM+VGPTGGGKSVVINAL +  T LG   + Y LNPKA+SVIELYG+L+P
Sbjct: 2128 MFETMLTRHTTMVVGPTGGGKSVVINALCQAQTKLGLMTKLYILNPKAMSVIELYGILDP 2187

Query: 656  ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANG 715
             TRDW DG+LSNIFR +NKP D   KERKYILFDGDVDALW+ENMNSVMDDNK+LTLANG
Sbjct: 2188 TTRDWTDGVLSNIFREINKPTD--KKERKYILFDGDVDALWVENMNSVMDDNKLLTLANG 2245

Query: 716  ERIRLLAHCQLLFEIHPIQSDS 737
            ERIRL AHC LLFE+  +Q  S
Sbjct: 2246 ERIRLQAHCALLFEVGDLQYAS 2267

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	741
ZFIN|ZDB-GENE-060531-163	3330	si:dkeyp-86b9.1 "si:dkeyp-86b9	0.369	0.082	0.631	9e-167
UNIPROTKB|F1RFM8	4479	DNAH10 "Uncharacterized protei	0.372	0.061	0.617	3.7e-164
UNIPROTKB|J9JHE6	4028	DNAH10 "Uncharacterized protei	0.369	0.068	0.614	1.3e-162
UNIPROTKB|F1NQP3	4033	F1NQP3 "Uncharacterized protei	0.369	0.067	0.621	1.7e-162
UNIPROTKB|F1PMG2	4291	DNAH10 "Uncharacterized protei	0.369	0.063	0.614	1.7e-162
UNIPROTKB|F1LR86	3322	Dnah10 "Protein Dnah10" [Rattu	0.369	0.082	0.621	1.9e-162
UNIPROTKB|Q8IVF4	4471	DNAH10 "Dynein heavy chain 10,	0.369	0.061	0.625	3.3e-162
UNIPROTKB|F1MSP8	4470	Bt.11479 "Uncharacterized prot	0.369	0.061	0.619	8.8e-162
UNIPROTKB|E2RMJ8	4436	DNAH10 "Uncharacterized protei	0.369	0.061	0.612	1.8e-161
FB|FBgn0013813	5080	Dhc98D "Dynein heavy chain at	0.369	0.053	0.587	5.9e-152

ZFIN|ZDB-GENE-060531-163 si:dkeyp-86b9.1 "si:dkeyp-86b9.1" [Danio rerio (taxid:7955)]

 Score = 866 (309.9 bits), Expect = 9.0e-167, Sum P(3) = 9.0e-167
 Identities = 187/296 (63%), Positives = 215/296 (72%)

Query:   314 IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEY----GY 369
             I DA EF+WESQLR+YW K      D L + QCS  F YGYE  YMGLNG          
Sbjct:   614 ITDAREFEWESQLRFYWVKE----PDELFVRQCSAQFCYGYE--YMGLNGRLVITPLTDR 667

Query:   370 EYMGLNGRLVI----TPL----TDRIYLT--ITQALSMRLGAAPAG--MDFLAFGKILSG 417
              Y+ L   L +     P     T +   T  + +AL +       G  MD++A GKILSG
Sbjct:   668 IYLTLTQALSMFLGGAPAGPAGTGKTESTKDLAKALGLLCVVTNCGEGMDYMAVGKILSG 727

Query:   418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFIT 477
             L+QCGAWGCFDEFNRID SVLSVIS+Q+ TIR AL+++  RF FEG +I ++N++GIFIT
Sbjct:   728 LAQCGAWGCFDEFNRIDASVLSVISSQIQTIRNALMLHLQRFHFEGQEISLDNRIGIFIT 787

Query:   478 MNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSK 537
             MNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFL AKVLAKKM VLYKL++
Sbjct:   788 MNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLVAKVLAKKMTVLYKLAR 847

Query:   538 EQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDV 593
             EQLSKQ HYDFG+RALKSVLVMAGELKR +  L E VVLMRALRDMNLPKFV EDV
Sbjct:   848 EQLSKQSHYDFGLRALKSVLVMAGELKRGSPNLSEDVVLMRALRDMNLPKFVFEDV 903

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

UNIPROTKB|F1RFM8 DNAH10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 851 (304.6 bits), Expect = 3.7e-164, Sum P(4) = 3.7e-164
 Identities = 184/298 (61%), Positives = 216/298 (72%)

Query:   312 AKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEY---- 367
             + I++A EF+WESQLR+YW +      D L I QC+G+F YGYE  YMGLNG        
Sbjct:  1759 SSILEAREFEWESQLRFYWDRE----PDELNIRQCTGTFSYGYE--YMGLNGRLVITPLT 1812

Query:   368 GYEYMGLNGRLVI----TPL----TDRIYLT--ITQALSMRLGAAPAG--MDFLAFGKIL 415
                Y+ L   L +     P     T +   T  + +AL +       G  MD+ A GKI 
Sbjct:  1813 DRIYLTLTQALSMYLGGAPAGPAGTGKTETTKDLAKALGLLCVVTNCGEGMDYKAVGKIF 1872

Query:   416 SGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIF 475
             SGL+QCGAWGCFDEFNRID SVLSVIS+Q+ TIR AL+   T FQFEG +I +++++GIF
Sbjct:  1873 SGLAQCGAWGCFDEFNRIDASVLSVISSQIQTIRNALIHQLTTFQFEGQEISLDSRMGIF 1932

Query:   476 ITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKL 535
             ITMNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFL AK LAKKM VLYKL
Sbjct:  1933 ITMNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLWAKTLAKKMTVLYKL 1992

Query:   536 SKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDV 593
             ++EQLSKQ HYDFG+RALKSVLVMAGELKR + +L E VVLMRALRDMNLPKFV EDV
Sbjct:  1993 AREQLSKQHHYDFGLRALKSVLVMAGELKRGSPELREDVVLMRALRDMNLPKFVFEDV 2050

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|J9JHE6 DNAH10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 844 (302.2 bits), Expect = 1.3e-162, Sum P(3) = 1.3e-162
 Identities = 182/296 (61%), Positives = 214/296 (72%)

Query:   314 IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEY----GY 369
             I++A EF+WESQLR+YW +      D L I QC+G+F YGYE  YMGLNG          
Sbjct:  1317 ILEAREFEWESQLRFYWDRE----PDELNIRQCTGTFSYGYE--YMGLNGRLVITPLTDR 1370

Query:   370 EYMGLNGRLVI----TPL----TDRIYLT--ITQALSMRLGAAPAG--MDFLAFGKILSG 417
              Y+ L   L +     P     T +   T  + +AL +       G  MD+ A GKI SG
Sbjct:  1371 IYLTLTQALSMYLGGAPAGPAGTGKTETTKDLAKALGLLCVVTNCGEGMDYKAIGKIFSG 1430

Query:   418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFIT 477
             L+QCGAWGCFDEFNRID SVLSVIS+Q+ TIR AL+   T F+FEG +I +++++GIFIT
Sbjct:  1431 LAQCGAWGCFDEFNRIDASVLSVISSQIQTIRNALIHQLTTFRFEGQEIALDSRMGIFIT 1490

Query:   478 MNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSK 537
             MNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFL AK L+KKM VLYKL++
Sbjct:  1491 MNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLWAKTLSKKMTVLYKLAR 1550

Query:   538 EQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDV 593
             EQLSKQ HYDFG+RALKSVLVMAGELKR +  L E VVLMRALRDMNLPKFV EDV
Sbjct:  1551 EQLSKQHHYDFGLRALKSVLVMAGELKRGSSDLREDVVLMRALRDMNLPKFVFEDV 1606

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1NQP3 F1NQP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 847 (303.2 bits), Expect = 1.7e-162, Sum P(3) = 1.7e-162
 Identities = 184/296 (62%), Positives = 213/296 (71%)

Query:   314 IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEY----GY 369
             I+ A+EF+WESQLR+YW +      D L + QC+G+F YGYE  YMGLNG          
Sbjct:  1607 ILQAQEFEWESQLRFYWDRE----PDELNVRQCTGTFSYGYE--YMGLNGRLVITPLTDR 1660

Query:   370 EYMGLNGRLVI----TPL----TDRIYLT--ITQALSMRLGAAPAG--MDFLAFGKILSG 417
              Y+ L   L +     P     T +   T  + +AL +       G  MDF A GKI SG
Sbjct:  1661 IYLTLTQALSMFLGGAPAGPAGTGKTETTKDLAKALGLLCVVTNCGEGMDFKAVGKIFSG 1720

Query:   418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFIT 477
             L+QCGAWGCFDEFNRID SVLSVIS+Q+  IR AL+     FQFEG +I +++++GIFIT
Sbjct:  1721 LAQCGAWGCFDEFNRIDASVLSVISSQIQVIRNALMNRLKTFQFEGQEINLDSRMGIFIT 1780

Query:   478 MNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSK 537
             MNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFL AKVLAKKM VLYKL+K
Sbjct:  1781 MNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLTAKVLAKKMTVLYKLAK 1840

Query:   538 EQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDV 593
             EQLSKQ HYDFG+RALKSVLVMAGELKR +  L E VVLMRALRDMNLPKFV EDV
Sbjct:  1841 EQLSKQHHYDFGLRALKSVLVMAGELKRGSPDLSEEVVLMRALRDMNLPKFVFEDV 1896

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1PMG2 DNAH10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 844 (302.2 bits), Expect = 1.7e-162, Sum P(3) = 1.7e-162
 Identities = 182/296 (61%), Positives = 214/296 (72%)

Query:   314 IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEY----GY 369
             I++A EF+WESQLR+YW +      D L I QC+G+F YGYE  YMGLNG          
Sbjct:  1580 ILEAREFEWESQLRFYWDRE----PDELNIRQCTGTFSYGYE--YMGLNGRLVITPLTDR 1633

Query:   370 EYMGLNGRLVI----TPL----TDRIYLT--ITQALSMRLGAAPAG--MDFLAFGKILSG 417
              Y+ L   L +     P     T +   T  + +AL +       G  MD+ A GKI SG
Sbjct:  1634 IYLTLTQALSMYLGGAPAGPAGTGKTETTKDLAKALGLLCVVTNCGEGMDYKAIGKIFSG 1693

Query:   418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFIT 477
             L+QCGAWGCFDEFNRID SVLSVIS+Q+ TIR AL+   T F+FEG +I +++++GIFIT
Sbjct:  1694 LAQCGAWGCFDEFNRIDASVLSVISSQIQTIRNALIHQLTTFRFEGQEIALDSRMGIFIT 1753

Query:   478 MNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSK 537
             MNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFL AK L+KKM VLYKL++
Sbjct:  1754 MNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLWAKTLSKKMTVLYKLAR 1813

Query:   538 EQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDV 593
             EQLSKQ HYDFG+RALKSVLVMAGELKR +  L E VVLMRALRDMNLPKFV EDV
Sbjct:  1814 EQLSKQHHYDFGLRALKSVLVMAGELKRGSSDLREDVVLMRALRDMNLPKFVFEDV 1869

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1LR86 Dnah10 "Protein Dnah10" [Rattus norvegicus (taxid:10116)]

 Score = 851 (304.6 bits), Expect = 1.9e-162, Sum P(3) = 1.9e-162
 Identities = 184/296 (62%), Positives = 215/296 (72%)

Query:   314 IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEY----GY 369
             I++A EF+WESQLR+YW +      D L I QC+G+F YGYE  YMGLNG          
Sbjct:   608 ILEAREFEWESQLRFYWDRE----PDELNIRQCTGTFGYGYE--YMGLNGRLVITPLTDR 661

Query:   370 EYMGLNGRLVI----TPL----TDRIYLT--ITQALSMRLGAAPAG--MDFLAFGKILSG 417
              Y+ L   L +     P     T +   T  + +AL +       G  MD+ A GKI SG
Sbjct:   662 IYLTLTQALSMYLGGAPAGPAGTGKTETTKDLAKALGLLCVVTNCGEGMDYKAVGKIFSG 721

Query:   418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFIT 477
             L+QCGAWGCFDEFNRID SVLSVIS+Q+ TIR AL+   T FQFEG +I +++++GIFIT
Sbjct:   722 LAQCGAWGCFDEFNRIDASVLSVISSQIQTIRNALIHQLTTFQFEGQEISLDSRMGIFIT 781

Query:   478 MNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSK 537
             MNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFL AK LAKKM VLYKL++
Sbjct:   782 MNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLGAKTLAKKMTVLYKLAR 841

Query:   538 EQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDV 593
             EQLSKQ HYDFG+RALKSVLVMAGELKR +  L+E VVLMRALRDMNLPKFV EDV
Sbjct:   842 EQLSKQHHYDFGLRALKSVLVMAGELKRGSADLQEDVVLMRALRDMNLPKFVFEDV 897

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

UNIPROTKB|Q8IVF4 DNAH10 "Dynein heavy chain 10, axonemal" [Homo sapiens (taxid:9606)]

 Score = 854 (305.7 bits), Expect = 3.3e-162, Sum P(3) = 3.3e-162
 Identities = 185/296 (62%), Positives = 214/296 (72%)

Query:   314 IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEY----GY 369
             I++A EF WESQLR+YW +      D L I QC+G+F YGYE  YMGLNG          
Sbjct:  1760 ILEAREFDWESQLRFYWDRE----PDELNIRQCTGTFGYGYE--YMGLNGRLVITPLTDR 1813

Query:   370 EYMGLNGRLVI----TPL----TDRIYLT--ITQALSMRLGAAPAG--MDFLAFGKILSG 417
              Y+ L   L +     P     T +   T  + +AL +       G  MD+ A GKI SG
Sbjct:  1814 IYLTLTQALSMYLGGAPAGPAGTGKTETTKDLAKALGLLCVVTNCGEGMDYRAVGKIFSG 1873

Query:   418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFIT 477
             L+QCGAWGCFDEFNRID SVLSVIS+Q+ TIR AL+   T FQFEG +I +++++GIFIT
Sbjct:  1874 LAQCGAWGCFDEFNRIDASVLSVISSQIQTIRNALIHQLTTFQFEGQEISLDSRMGIFIT 1933

Query:   478 MNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSK 537
             MNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFLEAK LAKKM VLYKL++
Sbjct:  1934 MNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLEAKTLAKKMTVLYKLAR 1993

Query:   538 EQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDV 593
             EQLSKQ HYDFG+RALKSVLVMAGELKR +  L E VVLMRALRDMNLPKFV EDV
Sbjct:  1994 EQLSKQYHYDFGLRALKSVLVMAGELKRGSSDLREDVVLMRALRDMNLPKFVFEDV 2049

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

UNIPROTKB|F1MSP8 Bt.11479 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 840 (300.8 bits), Expect = 8.8e-162, Sum P(3) = 8.8e-162
 Identities = 184/297 (61%), Positives = 215/297 (72%)

Query:   314 IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEY----GY 369
             I++A EF+WESQLR+YW +      D L I QC+G+F YGYE  YMGLNG          
Sbjct:  1758 ILEAREFEWESQLRFYWDRE----PDELNIRQCTGTFGYGYE--YMGLNGRLVITPLTDR 1811

Query:   370 EYMGLNGRLVI----TPL----TDRIYLT--ITQALSMRLGAAPAG--MDFLAFGKILSG 417
              Y+ L   L +     P     T +   T  + +AL +       G  MD+ A GKI SG
Sbjct:  1812 IYLTLTQALSMYLGGAPAGPAGTGKTETTKDLAKALGLLCVVTNCGEGMDYKAVGKIFSG 1871

Query:   418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFIT 477
             L+QCGAWGCFDEFNRID SVLSVIS+Q+ TIR AL+   T FQFEG +I +++++GIFIT
Sbjct:  1872 LAQCGAWGCFDEFNRIDASVLSVISSQIQTIRNALIHQLTTFQFEGQEISLDSRMGIFIT 1931

Query:   478 MNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAK-VLAKKMAVLYKLS 536
             MNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFL AK  LAKKM VLYKL+
Sbjct:  1932 MNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLWAKKTLAKKMTVLYKLA 1991

Query:   537 KEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDV 593
             +EQLSKQ HYDFG+RALKSVLVMAGELKR + +L E VVLMRALRDMNLPKFV EDV
Sbjct:  1992 REQLSKQHHYDFGLRALKSVLVMAGELKRGSSELREDVVLMRALRDMNLPKFVFEDV 2048

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|E2RMJ8 DNAH10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 835 (299.0 bits), Expect = 1.8e-161, Sum P(3) = 1.8e-161
 Identities = 182/297 (61%), Positives = 214/297 (72%)

Query:   314 IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEY----GY 369
             I++A EF+WESQLR+YW +      D L I QC+G+F YGYE  YMGLNG          
Sbjct:  1720 ILEAREFEWESQLRFYWDRE----PDELNIRQCTGTFSYGYE--YMGLNGRLVITPLTDR 1773

Query:   370 EYMGLNGRLVI----TPL----TDRIYLT--ITQALSMRLGAAPAG--MDFLAFGKILSG 417
              Y+ L   L +     P     T +   T  + +AL +       G  MD+ A GKI SG
Sbjct:  1774 IYLTLTQALSMYLGGAPAGPAGTGKTETTKDLAKALGLLCVVTNCGEGMDYKAIGKIFSG 1833

Query:   418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFIT 477
             L+QCGAWGCFDEFNRID SVLSVIS+Q+ TIR AL+   T F+FEG +I +++++GIFIT
Sbjct:  1834 LAQCGAWGCFDEFNRIDASVLSVISSQIQTIRNALIHQLTTFRFEGQEIALDSRMGIFIT 1893

Query:   478 MNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAK-VLAKKMAVLYKLS 536
             MNPGYAGRTELPESVKALFRPVV IVPD + IC+IMLFSEGFL AK  L+KKM VLYKL+
Sbjct:  1894 MNPGYAGRTELPESVKALFRPVVVIVPDLQQICEIMLFSEGFLWAKKTLSKKMTVLYKLA 1953

Query:   537 KEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDV 593
             +EQLSKQ HYDFG+RALKSVLVMAGELKR +  L E VVLMRALRDMNLPKFV EDV
Sbjct:  1954 REQLSKQHHYDFGLRALKSVLVMAGELKRGSSDLREDVVLMRALRDMNLPKFVFEDV 2010

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

FB|FBgn0013813 Dhc98D "Dynein heavy chain at 89D" [Drosophila melanogaster (taxid:7227)]

 Score = 812 (290.9 bits), Expect = 5.9e-152, Sum P(3) = 5.9e-152
 Identities = 174/296 (58%), Positives = 206/296 (69%)

Query:   314 IMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEY----GY 369
             ++DA EF WESQLR+YW K Y    D+L ++QCSGSF++GYE  YMGLNG          
Sbjct:  2304 VLDASEFSWESQLRFYWIKFY----DNLHVLQCSGSFDFGYE--YMGLNGRLVITPLTDR 2357

Query:   370 EYMGLNGRLVI-----------TPLTDRIY-LTITQALSMRLGAAPAGMDFLAFGKILSG 417
              Y+ +   L++           T  T+ +  L     L   +     GMD+ A G ILSG
Sbjct:  2358 IYLTITQALLMNLGGAPAGPAGTGKTETVKDLAKAMGLLCVVTNCGEGMDYRAVGTILSG 2417

Query:   418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFIT 477
             L QCGAWGCFDEFNRID+SVLSVISTQL TIR  L+    RF FEG +I ++ K G+F+T
Sbjct:  2418 LVQCGAWGCFDEFNRIDISVLSVISTQLQTIRNGLIRKLDRFVFEGVEIHLDPKCGVFVT 2477

Query:   478 MNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSK 537
             MNPGYAGRTELPESVKALFRPV CI PD ELIC I LFS+GFL AKVLAKKM VLY L++
Sbjct:  2478 MNPGYAGRTELPESVKALFRPVTCIKPDLELICLISLFSDGFLTAKVLAKKMTVLYSLAQ 2537

Query:   538 EQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDV 593
              QLSKQCHYD+G+R+L SVL MAG +KR +  L E+VVLMR LRDMN PKFV EDV
Sbjct:  2538 AQLSKQCHYDWGLRSLNSVLRMAGVMKRQSEDLPEAVVLMRVLRDMNFPKFVFEDV 2593

GO:0005875 "microtubule associated complex" evidence=ISS;NAS

GO:0003774 "motor activity" evidence=ISS

GO:0005858 "axonemal dynein complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=IEA;ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8IVF4	DYH10_HUMAN	No assigned EC number	0.6135	0.5465	0.0905	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	741
pfam12774	231	pfam12774, AAA_6, Hydrolytic ATP binding site of d	3e-83
pfam08393	408	pfam08393, DHC_N2, Dynein heavy chain, N-terminal	3e-26
COG5245	3164	COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	7e-07
COG5245	3164	COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	2e-05

>gnl|CDD|193250 pfam12774, AAA_6, Hydrolytic ATP binding site of dynein motor region D1

 Score =  263 bits (673), Expect = 3e-83
 Identities = 124/229 (54%), Positives = 153/229 (66%), Gaps = 29/229 (12%)

Query: 367 YGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAG--------------------- 405
           Y YEY+G   RLVITPLTDR Y+T+TQ+L + +  APAG                     
Sbjct: 1   YSYEYLGNTPRLVITPLTDRCYITLTQSLHLTMSGAPAGPAGTGKTETTKDLGRALGIMV 60

Query: 406 --------MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINAT 457
                   MD+ + G I  GL+Q GAWGCFDEFNRI V VLSV++ Q+  ++ A+     
Sbjct: 61  YVFNCSEQMDYKSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKCVQDAIRDKKQ 120

Query: 458 RFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSE 517
            F F G +I +   VGIFITMNPGYAGRTELPE++KALFRP   +VPDFELIC+IML +E
Sbjct: 121 WFNFLGEEISLIPSVGIFITMNPGYAGRTELPENLKALFRPCAMVVPDFELICEIMLVAE 180

Query: 518 GFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRA 566
           GFLEA++LA+K   LY L KE LSKQ HYD+G+RA+KSVLV+AG LKR 
Sbjct: 181 GFLEARLLARKFITLYTLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRG 229

the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D1 unit of the motor and contains the hydrolytic ATP binding site. Length = 231

>gnl|CDD|219818 pfam08393, DHC_N2, Dynein heavy chain, N-terminal region 2

 Score =  111 bits (280), Expect = 3e-26
 Identities = 40/80 (50%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 232 IMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDEL 291
           +M + +K+P V+E C +P  LE LE+L + LE  +KSL +YL  KR+AFPRF+F+S+D+L
Sbjct: 263 LMKKANKDPNVLEVCNIPGLLEKLEKLNEQLEKIQKSLNEYLESKRSAFPRFYFLSNDDL 322

Query: 292 LSILGSSS-PTAIQEHIVKF 310
           L IL  S  PTA+Q H+ K 
Sbjct: 323 LEILSQSKDPTAVQPHLKKL 342

Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. This region is found C-terminal to the dynein heavy chain N-terminal region 1 (pfam08385) in many members of this family. No functions seem to have been attributed specifically to this region. Length = 408

>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]

 Score = 52.7 bits (126), Expect = 7e-07
 Identities = 82/339 (24%), Positives = 144/339 (42%), Gaps = 69/339 (20%)

Query: 422  GAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPG 481
            G++ CFDEFNR+    +S  S +L       L +  + +F             F+ MN G
Sbjct: 1660 GSYLCFDEFNRLSEETMSA-SVELY------LSSKDKTKF-------------FLQMNYG 1699

Query: 482  YAGRTELPESVKALFRPVVCIV--PDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQ 539
            Y  R EL  S++A+F      +  PD  LI  I  + E   E   + + +      +  Q
Sbjct: 1700 YKPR-ELTRSLRAIFGYAETRIDTPDVSLI--IDWYCEAIRE--KIDRLVQQKESSTSRQ 1754

Query: 540  LSKQCHYDFGMRALKSVLVMAG-----------ELKRAALQLEESVVLMRALRDMNLPKF 588
                  YDFG+RA++ ++                   A L  ++  V +  +R      F
Sbjct: 1755 D----LYDFGLRAIREMIAGHIGEAEITFSMILFFGMACLLKKDLAVFVEEVRK----IF 1806

Query: 589  VSEDV-VQM--YETMLT-----RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN 640
             S  + V+   Y+  L      R   ++VG  G  K V+I         + +      LN
Sbjct: 1807 GSSHLDVEAVAYKDALLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVCW------LN 1860

Query: 641  PKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGD-VDALWIEN 699
            P+  ++ E++G  +  T D+ D L     R        G +E    +F+   V++ ++E+
Sbjct: 1861 PR--NMREIFGHRDELTGDFRDSLKVQDLRRNIH----GGRE-CLFIFESIPVESSFLED 1913

Query: 700  MNSVMDDNKILTLANG-ERIRLLAHCQLLFEIHPIQSDS 737
             N ++D+N+ L L +G ERIR+  + + +FE   ++ D+
Sbjct: 1914 FNPLLDNNRFLCLFSGNERIRIPENLRFVFESTSLEKDT 1952

Length = 3164

>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]

 Score = 48.1 bits (114), Expect = 2e-05
 Identities = 44/398 (11%), Positives = 104/398 (26%), Gaps = 84/398 (21%)

Query: 366  EYGYEYMGLNGRLVITPLTDRIYLTITQAL------------SMRLGAAPAGMDFLAFG- 412
               +    +   +    +    +  + +A+            S   G   AG   +  G 
Sbjct: 915  AEMFAKNTIPFFVFEHSMDTSQHQKLFEAVCDEVCRFVDTENSRVYGMLVAGKGRIYDGT 974

Query: 413  ----KILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIM 468
                +I +G       G  +E   +D    +++  + L       +            + 
Sbjct: 975  EPRSRIEAGPICEEERG-TEESALLDEISRTILVDEYL-NSDEFRMLEELNSAVVEHGLK 1032

Query: 469  NNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKK 528
            +    + + +N     R  + E  +      +  +P F  I             + L ++
Sbjct: 1033 SPSTPVEMIINE----RNIVLEIGRRALDMFLSNIP-FGAIKSRR---------ESLDRE 1078

Query: 529  MAVLYKLSKEQLSKQCHYDF-----GMRALKSVLVMAGELKRAALQLEESVVLMRALRDM 583
            +            ++    F      ++A   +L    E     L +    ++   LR+ 
Sbjct: 1079 IGAFNNEVDGIAREEDELMFYPMFKSLKAKHRMLEEKTEYLNKILSITGLPLISDTLRER 1138

Query: 584  ----------------NLPKFVSEDV--------VQMYETMLTRHSTMIVGPTGGGKSVV 619
                            +L K+ S+ V        V    ++ T             K   
Sbjct: 1139 IDTLDAEWDSFCRISESLKKYESQQVSGLDVAQFVSFLRSVDTGAFHAEYFRVFLCK--- 1195

Query: 620  INALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPG 679
            I         L +    Y       + +EL        R+  +  L++            
Sbjct: 1196 IKHYTDACDYLWHVKSPYVKKKYFDADMELRQFFLMFNREDMEARLAD------------ 1243

Query: 680  SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGER 717
               +     +      ++E   + +   K+   + GE 
Sbjct: 1244 --SKMEYEVER-----YVEKTKAEVSSLKLELSSVGEG 1274

Length = 3164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	741
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	100.0
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	99.97
PF08393	408	DHC_N2: Dynein heavy chain, N-terminal region 2; I	99.9
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	99.83
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	99.75
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	99.75
KOG1808|consensus	1856		99.46
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.25
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	98.98
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	98.94
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	98.86
KOG1808|consensus	1856		98.8
PHA02244	383	ATPase-like protein	98.71
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	98.54
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.26
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.23
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.03
PHA02244	383	ATPase-like protein	97.95
PF07726	131	AAA_3: ATPase family associated with various cellu	97.7
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.6
KOG0730|consensus	693		97.58
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	97.54
CHL00095	821	clpC Clp protease ATP binding subunit	97.26
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.17
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.17
COG0714	329	MoxR-like ATPases [General function prediction onl	97.1
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	97.08
COG0714	329	MoxR-like ATPases [General function prediction onl	97.04
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.02
PF00004	132	AAA: ATPase family associated with various cellula	97.0
PRK08118	167	topology modulation protein; Reviewed	96.93
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	96.86
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.84
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	96.82
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.8
CHL00195	489	ycf46 Ycf46; Provisional	96.79
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	96.69
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	96.55
PRK12402	337	replication factor C small subunit 2; Reviewed	96.54
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.52
smart00382	148	AAA ATPases associated with a variety of cellular	96.48
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	96.46
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.42
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	96.41
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	96.34
PRK07261	171	topology modulation protein; Provisional	96.27
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.22
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	96.21
KOG0736|consensus	953		96.17
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.13
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	96.11
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.09
PRK15424	538	propionate catabolism operon regulatory protein Pr	96.06
PF05729	166	NACHT: NACHT domain	96.04
PRK10865	857	protein disaggregation chaperone; Provisional	96.03
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	96.01
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	96.0
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	96.0
PRK06526	254	transposase; Provisional	95.95
cd03115	173	SRP The signal recognition particle (SRP) mediates	95.95
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	95.94
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	95.94
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	95.92
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	95.91
PLN03025	319	replication factor C subunit; Provisional	95.91
PRK13531	498	regulatory ATPase RavA; Provisional	95.9
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	95.89
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	95.85
PRK07940	394	DNA polymerase III subunit delta'; Validated	95.8
PRK06762	166	hypothetical protein; Provisional	95.77
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	95.74
PRK08233	182	hypothetical protein; Provisional	95.74
PRK08181	269	transposase; Validated	95.73
PF13173	128	AAA_14: AAA domain	95.72
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	95.65
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	95.65
PRK08084	235	DNA replication initiation factor; Provisional	95.65
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	95.64
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.59
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	95.55
COG3911	183	Predicted ATPase [General function prediction only	95.54
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	95.53
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	95.52
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	95.5
KOG1533|consensus	290		95.5
PRK00440	319	rfc replication factor C small subunit; Reviewed	95.48
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	95.45
PRK13808	333	adenylate kinase; Provisional	95.44
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	95.43
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	95.38
PRK04195	482	replication factor C large subunit; Provisional	95.35
PHA02544	316	44 clamp loader, small subunit; Provisional	95.33
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	95.3
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.29
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	95.27
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	95.26
PRK00131	175	aroK shikimate kinase; Reviewed	95.25
PRK06217	183	hypothetical protein; Validated	95.24
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.22
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	95.19
PRK11608	326	pspF phage shock protein operon transcriptional ac	95.18
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	95.18
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	95.17
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	95.14
PRK13833	323	conjugal transfer protein TrbB; Provisional	95.14
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.14
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	95.13
KOG3062|consensus	281		95.12
KOG1534|consensus	273		95.11
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.11
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	95.1
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	95.1
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.1
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	95.1
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	95.09
PRK00411	394	cdc6 cell division control protein 6; Reviewed	95.08
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.08
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.04
PRK05022	509	anaerobic nitric oxide reductase transcription reg	95.03
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.01
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.01
COG0606	490	Predicted ATPase with chaperone activity [Posttran	95.0
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	94.97
PRK03839	180	putative kinase; Provisional	94.94
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	94.94
PRK14530	215	adenylate kinase; Provisional	94.9
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	94.9
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	94.88
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	94.87
smart00350	509	MCM minichromosome maintenance proteins.	94.86
COG2256	436	MGS1 ATPase related to the helicase subunit of the	94.86
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	94.83
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	94.82
PF13555	62	AAA_29: P-loop containing region of AAA domain	94.8
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	94.78
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	94.77
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	94.77
PRK09862	506	putative ATP-dependent protease; Provisional	94.76
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	94.73
COG2204	464	AtoC Response regulator containing CheY-like recei	94.73
PLN02842	505	nucleotide kinase	94.72
PRK10536	262	hypothetical protein; Provisional	94.72
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	94.72
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	94.71
PF07726	131	AAA_3: ATPase family associated with various cellu	94.7
PF13245	76	AAA_19: Part of AAA domain	94.7
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	94.7
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	94.65
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	94.64
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	94.64
KOG0741|consensus	744		94.64
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	94.62
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	94.6
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	94.57
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	94.56
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	94.55
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	94.52
PRK14738	206	gmk guanylate kinase; Provisional	94.52
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	94.51
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	94.49
COG1221	403	PspF Transcriptional regulators containing an AAA-	94.49
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	94.48
PRK00300	205	gmk guanylate kinase; Provisional	94.47
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	94.47
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	94.44
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	94.42
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	94.42
PRK14531	183	adenylate kinase; Provisional	94.41
PRK03992	389	proteasome-activating nucleotidase; Provisional	94.39
PRK13949	169	shikimate kinase; Provisional	94.39
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	94.37
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	94.37
PRK14532	188	adenylate kinase; Provisional	94.34
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	94.33
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	94.32
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	94.32
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	94.32
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	94.3
PRK13851	344	type IV secretion system protein VirB11; Provision	94.3
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	94.28
PRK07667	193	uridine kinase; Provisional	94.26
PRK05541	176	adenylylsulfate kinase; Provisional	94.25
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	94.25
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	94.22
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	94.22
KOG0743|consensus	457		94.22
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	94.21
PRK13768	253	GTPase; Provisional	94.21
PRK06893	229	DNA replication initiation factor; Validated	94.2
PF13479	213	AAA_24: AAA domain	94.19
PRK02496	184	adk adenylate kinase; Provisional	94.17
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	94.16
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	94.15
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	94.14
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	94.13
PRK09183	259	transposase/IS protein; Provisional	94.11
PRK06851	367	hypothetical protein; Provisional	94.09
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	94.07
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	94.07
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	94.06
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	94.06
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	94.05
TIGR02533	486	type_II_gspE general secretory pathway protein E.	94.03
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	94.02
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	94.02
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	94.02
KOG0745|consensus	564		94.01
COG4525	259	TauB ABC-type taurine transport system, ATPase com	94.0
PRK13947	171	shikimate kinase; Provisional	94.0
PRK10416	318	signal recognition particle-docking protein FtsY;	93.97
KOG0744|consensus	423		93.97
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	93.96
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	93.95
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	93.93
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	93.92
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	93.92
KOG0733|consensus	802		93.91
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	93.91
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	93.91
PRK06696	223	uridine kinase; Validated	93.89
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	93.88
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	93.84
PF00005	137	ABC_tran: ABC transporter This structure is on hol	93.83
KOG0738|consensus	491		93.83
KOG0727|consensus	408		93.83
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	93.81
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	93.81
COG2884	223	FtsE Predicted ATPase involved in cell division [C	93.81
PRK05057	172	aroK shikimate kinase I; Reviewed	93.81
PRK05480	209	uridine/cytidine kinase; Provisional	93.8
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	93.78
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	93.77
PRK00698	205	tmk thymidylate kinase; Validated	93.76
cd03116	159	MobB Molybdenum is an essential trace element in t	93.73
cd03114	148	ArgK-like The function of this protein family is u	93.71
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	93.7
PF09439	181	SRPRB: Signal recognition particle receptor beta s	93.67
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	93.67
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	93.66
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	93.64
TIGR00064	272	ftsY signal recognition particle-docking protein F	93.63
TIGR00235	207	udk uridine kinase. Model contains a number of lon	93.61
PRK08903	227	DnaA regulatory inactivator Hda; Validated	93.61
PRK06547	172	hypothetical protein; Provisional	93.58
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	93.58
KOG0733|consensus	802		93.57
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	93.56
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	93.55
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	93.55
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	93.53
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	93.53
PTZ00088	229	adenylate kinase 1; Provisional	93.49
PRK14527	191	adenylate kinase; Provisional	93.47
CHL00095	821	clpC Clp protease ATP binding subunit	93.46
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	93.46
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	93.44
PRK05707	328	DNA polymerase III subunit delta'; Validated	93.44
PRK04040	188	adenylate kinase; Provisional	93.44
PRK14737	186	gmk guanylate kinase; Provisional	93.42
COG3638	258	ABC-type phosphate/phosphonate transport system, A	93.41
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	93.41
PRK10436	462	hypothetical protein; Provisional	93.39
KOG0991|consensus	333		93.37
PRK14528	186	adenylate kinase; Provisional	93.37
PRK00625	173	shikimate kinase; Provisional	93.35
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	93.34
PRK13764	602	ATPase; Provisional	93.33
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	93.32
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	93.31
PRK08699	325	DNA polymerase III subunit delta'; Validated	93.29
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	93.29
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	93.27
PRK08939	306	primosomal protein DnaI; Reviewed	93.26
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	93.25
PRK06761	282	hypothetical protein; Provisional	93.25
PF12846	304	AAA_10: AAA-like domain	93.22
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	93.21
CHL00181	287	cbbX CbbX; Provisional	93.21
PRK00279	215	adk adenylate kinase; Reviewed	93.16
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	93.14
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	93.13
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	93.1
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	93.02
PRK00889	175	adenylylsulfate kinase; Provisional	93.02
COG1855	604	ATPase (PilT family) [General function prediction	93.01
TIGR03819	340	heli_sec_ATPase helicase/secretion neighborhood AT	92.99
PRK05439	311	pantothenate kinase; Provisional	92.96
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	92.92
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	92.92
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	92.89
PRK06851	367	hypothetical protein; Provisional	92.87
PRK12377	248	putative replication protein; Provisional	92.87
PLN02200	234	adenylate kinase family protein	92.86
PTZ00301	210	uridine kinase; Provisional	92.85
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	92.84
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	92.83
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	92.83
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	92.83
PRK06620	214	hypothetical protein; Validated	92.82
PRK13765	637	ATP-dependent protease Lon; Provisional	92.81
PRK09825	176	idnK D-gluconate kinase; Provisional	92.81
PF00270	169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	92.81
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	92.78
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	92.77
PRK06921	266	hypothetical protein; Provisional	92.77
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	92.74
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	92.7
PRK06871	325	DNA polymerase III subunit delta'; Validated	92.7
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	92.67
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	92.66
KOG0054|consensus	1381		92.66
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	92.65
PRK08727	233	hypothetical protein; Validated	92.64
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	92.64
KOG1970|consensus	634		92.61
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	92.57
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	92.57
PRK13975	196	thymidylate kinase; Provisional	92.55
PRK14974	336	cell division protein FtsY; Provisional	92.54
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	92.53
PLN02796	347	D-glycerate 3-kinase	92.51
PHA02530	300	pseT polynucleotide kinase; Provisional	92.49
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	92.49
KOG2228|consensus	408		92.47
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	92.47
COG4619	223	ABC-type uncharacterized transport system, ATPase	92.47
PRK00771	437	signal recognition particle protein Srp54; Provisi	92.46
KOG0055|consensus	1228		92.46
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	92.4
PRK03731	171	aroL shikimate kinase II; Reviewed	92.4
PRK14526	211	adenylate kinase; Provisional	92.38
PRK13946	184	shikimate kinase; Provisional	92.35
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	92.34
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	92.34
PRK01184	184	hypothetical protein; Provisional	92.31
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	92.31
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	92.31
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	92.31
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	92.3
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	92.29
PRK08356	195	hypothetical protein; Provisional	92.29
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	92.27
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	92.26
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	92.26
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	92.25
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	92.25
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	92.25
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	92.24
PRK04182	180	cytidylate kinase; Provisional	92.23
PRK07952	244	DNA replication protein DnaC; Validated	92.19
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	92.18
PRK14529	223	adenylate kinase; Provisional	92.18
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	92.18
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	92.16
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	92.14
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	92.14
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	92.13
cd03269	210	ABC_putative_ATPase This subfamily is involved in	92.12
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	92.11
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	92.1
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	92.08
PRK13342	413	recombination factor protein RarA; Reviewed	92.08
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	92.07
PRK05564	313	DNA polymerase III subunit delta'; Validated	92.06
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	92.06
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	92.03
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	92.02
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	92.02
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	92.01
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	91.99
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	91.99
cd02034	116	CooC The accessory protein CooC, which contains a	91.98
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	91.97
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	91.96
KOG0989|consensus	346		91.96
PRK13948	182	shikimate kinase; Provisional	91.95
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	91.94
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	91.92
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	91.92
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	91.88
PRK15455	644	PrkA family serine protein kinase; Provisional	91.88
PRK08116	268	hypothetical protein; Validated	91.87
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	91.86
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	91.85
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	91.85
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	91.85
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	91.85
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	91.85
COG1127	263	Ttg2A ABC-type transport system involved in resist	91.83
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	91.82
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	91.81
PRK03846	198	adenylylsulfate kinase; Provisional	91.78
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	91.75
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	91.74
smart00350	509	MCM minichromosome maintenance proteins.	91.74
PRK14088	440	dnaA chromosomal replication initiation protein; P	91.74
cd03246	173	ABCC_Protease_Secretion This family represents the	91.73
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	91.72
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	91.71
PRK06835	329	DNA replication protein DnaC; Validated	91.68
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	91.68
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	91.65
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	91.63
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	91.62
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	91.61
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	91.59
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	91.59
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	91.59
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	91.58
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	91.58
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	91.55
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	91.54
TIGR01447	586	recD exodeoxyribonuclease V, alpha subunit. This f	91.53
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	91.51
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	91.51
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	91.5
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	91.49
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	91.48
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	91.47
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	91.46
PRK09087	226	hypothetical protein; Validated	91.44
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	91.44
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	91.43
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	91.43
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	91.42
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	91.42
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	91.39
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	91.36
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	91.36
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	91.35
PRK15453	290	phosphoribulokinase; Provisional	91.35
cd03216	163	ABC_Carb_Monos_I This family represents the domain	91.34
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	91.33
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	91.32
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	91.32
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	91.31
PRK10908	222	cell division protein FtsE; Provisional	91.31
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	91.3
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	91.29
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	91.28
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	91.23
PRK05642	234	DNA replication initiation factor; Validated	91.21
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	91.2
COG4181	228	Predicted ABC-type transport system involved in ly	91.19
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	91.18
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	91.17
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	91.16
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	91.16
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	91.16
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	91.15
cd03215	182	ABC_Carb_Monos_II This family represents domain II	91.15
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	91.15
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	91.14
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	91.12
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	91.1
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	91.1
KOG3347|consensus	176		91.09
KOG0731|consensus	774		91.07
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	91.07
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	91.05
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	91.05
PLN02674	244	adenylate kinase	91.04
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	91.04
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	91.02
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	90.99
PHA02774	613	E1; Provisional	90.99
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	90.98
PRK13973	213	thymidylate kinase; Provisional	90.95
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	90.94
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	90.93
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	90.93
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	90.92
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	90.91
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	90.9
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	90.89
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	90.89
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	90.89
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	90.88
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	90.88
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	90.86
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	90.86
cd03234	226	ABCG_White The White subfamily represents ABC tran	90.86
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	90.85
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	90.85
KOG0482|consensus	721		90.82
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	90.8
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	90.79
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	90.78
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	90.78
PLN02165	334	adenylate isopentenyltransferase	90.78
PRK00098	298	GTPase RsgA; Reviewed	90.77
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	90.76
PTZ00112	1164	origin recognition complex 1 protein; Provisional	90.76
KOG2749|consensus	415		90.75
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	90.74
PRK12288	347	GTPase RsgA; Reviewed	90.74
PRK10867	433	signal recognition particle protein; Provisional	90.73
PRK08058	329	DNA polymerase III subunit delta'; Validated	90.73
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	90.72

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=100.00  E-value=7.3e-66  Score=530.98  Aligned_cols=202  Identities=62%  Similarity=1.004  Sum_probs=164.8

Q ss_pred             ccccccCCCCCceeccchhHHHHHHHHHHHcccCCCCC-----------------------------CCCHHHHHHHHHH
Q psy17620        367 YGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPA-----------------------------GMDFLAFGKILSG  417 (741)
Q Consensus       367 YgyEYlG~~~rLViTPLTdRc~~tl~~Al~~~~GGap~-----------------------------~~d~~~~~ri~~G  417 (741)
                      |||||+|+++|||+||||||||++|++|+++++||+|.                             ++|+++|+||++|
T Consensus         1 YgyEY~G~~~rlv~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G   80 (231)
T PF12774_consen    1 YGYEYLGNSPRLVITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKG   80 (231)
T ss_dssp             -------S-------HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHH
T ss_pred             CCccccCCCCCceechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHH
Confidence            99999999999999999999999999999999999854                             6999999999999


Q ss_pred             hhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHHhhcce
Q psy17620        418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFR  497 (741)
Q Consensus       418 laq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFR  497 (741)
                      ++++|||+||||||||+.+|||++++||++|++|++++.+++.++|++|+++|++++|+||||||+||++||+|||++||
T Consensus        81 ~~~~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFR  160 (231)
T PF12774_consen   81 LAQSGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFR  160 (231)
T ss_dssp             HHHHT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEE
T ss_pred             HhhcCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccccchhhHHHHHHHhhHhHhhhc
Q psy17620        498 PVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAAL  568 (741)
Q Consensus       498 pvam~~PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hydfgLRalksVL~~a~~l~~~~~  568 (741)
                      ||+|++||+++|+|++|++.||.+|+.||+|++.+|++|++++|+|+|||||||++|+||..|+++||+.|
T Consensus       161 pvam~~PD~~~I~ei~L~s~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~kr~~p  231 (231)
T PF12774_consen  161 PVAMMVPDLSLIAEILLLSQGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSLKRGDP  231 (231)
T ss_dssp             EEE--S--HHHHHHHHHHCCCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHHHT---
T ss_pred             eeEEeCCCHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHHhcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=99.97  E-value=1.7e-30  Score=302.66  Aligned_cols=485  Identities=11%  Similarity=0.015  Sum_probs=352.5

Q ss_pred             hHHHHHHHHhcchhhhhccchhhhhhcccchhhhhhhhhhhccccccccchhhhHHHHHHhhhcCccchhhcccccHHHH
Q psy17620        175 ARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLESVIMWETHKNPRVIEQCLVPNRLEH  254 (741)
Q Consensus       175 ~r~vye~~~~~~~~~~~~~~~~e~~~f~~~~~v~~~w~~~~~~f~~~~~~~~~~~~~im~~~~~~~~v~~~~~~~~~~~~  254 (741)
                      +++.=+..+--+..|+.-.+|+++.||+.          +-+.+-|           |-+++..--.++.....|+.-. 
T Consensus       625 ~~~ld~y~~~~~~~dl~~~ip~~~~~~~s----------l~s~~~~-----------i~~r~~~~~~~i~~i~~~~~d~-  682 (3164)
T COG5245         625 LRRLDEYLMMMSLEDLMPLIPHAVHRKMS----------LVSGVRG-----------IYKRVVSGCEAINTILEDVGDD-  682 (3164)
T ss_pred             HHHHHHHHHHhhhhhhcccccHHHHHHHH----------HHhhhhh-----------hhhhhhcccchhheeeccCCch-
Confidence            34443444444456899999999999987          3333333           6677777777777888887776 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCcccccCcHHHHHHhcC-CCchhhhhhHHHHhhhcC----------Cc------
Q psy17620        255 LEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGS-SSPTAIQEHIVKFAAKIM----------DA------  317 (741)
Q Consensus       255 L~~~~~~L~~i~k~L~~yLe~kR~~FPRFyFLsn~dLL~ils~-~~~~~i~~hl~k~f~~I~----------~~------  317 (741)
                      |.-.-++|+.|..|++.+|+.+|..|||  |++++||++++++ .+...+-++++|+|.++.          ..      
T Consensus       683 l~l~~~~~~~v~~si~~~l~~~~r~~~r--~~~~~~l~~~v~~~~~~~~~~~f~~k~~~~~e~~~~~~~~i~~~~~~~~~  760 (3164)
T COG5245         683 LDLFYKEMDQVFMSIEKVLGLRWREVER--ASEVEELMDRVRELENRVYSYRFFVKKIAKEEMKTVFSSRIQKKEPFSLD  760 (3164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhh--hcchHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHhccCCCccch
Confidence            8889999999999999999999999999  8999999999998 577788888888764220          00      


Q ss_pred             --------------C------------------------------------------------hHHHHHH----hhhhhc
Q psy17620        318 --------------E------------------------------------------------EFQWESQ----LRYYWK  331 (741)
Q Consensus       318 --------------~------------------------------------------------~f~W~~q----LRyy~~  331 (741)
                                    .                                                .-.|.+.    +--||.
T Consensus       761 ~~~~~~~~~l~~~~~~~~~in~s~~~v~sq~~~~~~~~~~~~d~~~~vs~~~~~~~~l~~~~~~~~~e~c~~~~~s~y~~  840 (3164)
T COG5245         761 SEAYVGFFRLYEKSIVIRGINRSMGRVLSQYLESVQEALEIEDGSFFVSRHRVRDGGLEKGRGCDAWENCFDPPLSEYFR  840 (3164)
T ss_pred             HHhhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcceEEEeeeehhhcccccccchHHHHHhcCchHHHHHH
Confidence                          0                                                0123332    223442


Q ss_pred             ccccCcc-------Cce----------------EEEEecc--ccc-----c-----cccc---c--cccccccccccccc
Q psy17620        332 KSYLDWK-------DSL----------------VIIQCSG--SFE-----Y-----GYEH---E--YMGLNGSFEYGYEY  371 (741)
Q Consensus       332 ~~~~~~~-------~~~----------------~i~~~~~--~~~-----~-----~~~~---~--~~~l~~~~~YgyEY  371 (741)
                      .-..-.+       |++                +|+|...  +++     |     .++.   .  ....+....|-|||
T Consensus       841 ~~~~~~~~~~~~~~d~v~k~l~~~~~~~~~~~~ii~~~~~~~~~~~~~l~~~~i~~~~q~l~~~~~~~~s~y~~~~~f~~  920 (3164)
T COG5245         841 ILEKIFPSEEGYFFDEVLKRLDPGHEIKSRIEEIIRMVTVKYDFCLEVLGSVSISELPQGLYKRFIKVRSSYRSAEMFAK  920 (3164)
T ss_pred             HHHHhcccccccchHHHHHhcCchhhHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhheEeechhhHHHHHHHh
Confidence            1000000       000                0111111  000     0     0000   0  12335556799999


Q ss_pred             cCCCCCceeccchhHHHHHHHHHHHcccC---CC--C--------------CCCCHHHHHHHHHHhhhcCcceeeccccc
Q psy17620        372 MGLNGRLVITPLTDRIYLTITQALSMRLG---AA--P--------------AGMDFLAFGKILSGLSQCGAWGCFDEFNR  432 (741)
Q Consensus       372 lG~~~rLViTPLTdRc~~tl~~Al~~~~G---Ga--p--------------~~~d~~~~~ri~~Glaq~GaW~cfDEfnr  432 (741)
                      .|.+.+++.||+----+.+|+.|++...+   |.  .              .|+||+  +||..|..+-|+|| ||||||
T Consensus       921 ~~ip~~~~~~~~~~~~~~~l~~a~~~~~c~f~~t~~s~~~~~~~~~~gri~d~~~~~--sri~~g~~~~~~~g-~~e~~~  997 (3164)
T COG5245         921 NTIPFFVFEHSMDTSQHQKLFEAVCDEVCRFVDTENSRVYGMLVAGKGRIYDGTEPR--SRIEAGPICEEERG-TEESAL  997 (3164)
T ss_pred             cCCChhheechhhhhhHHHHHHHHHHHHheecCCCCceeHHHHhcCCCeeecCCChh--hhhhccceehhhcc-chhHHH
Confidence            99999999999999999999999998653   11  1              178888  89999999999999 999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHHhhcceeeeccCCCHHHHHHH
Q psy17620        433 IDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQI  512 (741)
Q Consensus       433 l~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRpvam~~PD~~~I~ei  512 (741)
                      +++-++ .|+..++.+++.++-..+....--++-++.|++++|+|+||    |.++|+|+|..||.+.|..| ...|++.
T Consensus       998 lde~~~-~i~~~~~~~~~~~~~~~~~~s~~~e~~~~sp~t~v~~~in~----r~~~~e~~~~a~~~f~~~~p-~g~i~~~ 1071 (3164)
T COG5245         998 LDEISR-TILVDEYLNSDEFRMLEELNSAVVEHGLKSPSTPVEMIINE----RNIVLEIGRRALDMFLSNIP-FGAIKSR 1071 (3164)
T ss_pred             HHHHHH-HHhhhHHhcchHHHHHHHHHHHHHHcCCCCCCCceEEEecc----hhhHHHHHHHHHHHHHhcCC-chhHHHH
Confidence            999999 77777888888888776655544445577899999999999    89999999999999999999 8889887


Q ss_pred             HHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccccchhhHHHHHHHhhHhHhhhccchHHHHHHHHHHhccCCCc----
Q psy17620        513 MLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKF----  588 (741)
Q Consensus       513 ~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hydfgLRalksVL~~a~~l~~~~~~~~E~~~l~ral~~~~lPkl----  588 (741)
                      .         ++|+++|..|.++.+...+..+||-|  |.++.+|+.+..+.....+. |..+ +.   ..-+|-+    
T Consensus      1072 ~---------~sl~~~i~~f~~~~~~~~~~~~~~~f--~~~~~~l~~~~~~l~e~~e~-~~~i-~~---~~~lp~i~dtl 1135 (3164)
T COG5245        1072 R---------ESLDREIGAFNNEVDGIAREEDELMF--YPMFKSLKAKHRMLEEKTEY-LNKI-LS---ITGLPLISDTL 1135 (3164)
T ss_pred             H---------HHHHHHHHHHHHHhhhhhcccchhhh--HHHHHHHhhcchHHHHhhHH-HHHH-HH---HhCCCchhHHH
Confidence            3         89999999999999999999999998  99999999988776543211 1111 10   0112211    


Q ss_pred             --------------------------------chhhHHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        589 --------------------------------VSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       589 --------------------------------~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                                                      .....+.+|.+..+...-+++|..|+||+.-|+..+..+..   ....
T Consensus      1136 ~e~~~~~da~~~~~~~~s~~~~~~~s~q~sg~~~a~f~~f~~~~~t~~~~~~~~~~~~~k~~~~~~~~d~~~h---~~~~ 1212 (3164)
T COG5245        1136 RERIDTLDAEWDSFCRISESLKKYESQQVSGLDVAQFVSFLRSVDTGAFHAEYFRVFLCKIKHYTDACDYLWH---VKSP 1212 (3164)
T ss_pred             HHHHHHHhhcCCchhHHHHHHHHHhhccccCccHHHHHHHHHHhhhcHHHHHHHHHhhcccchhhhhhccccc---cCch
Confidence                                            11113446777788888899999999999999997764321   1122


Q ss_pred             EEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEcCCCChhhhhhccccccCCceeeccCCC
Q psy17620        637 YTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGE  716 (741)
Q Consensus       637 ~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L~L~nGe  716 (741)
                      +++.       +   ++ .++-||. |+|.++.|+--..  .-++.+-|.+||.     ++|.+|+++||||++++|+||
T Consensus      1213 yv~~-------~---~~-~a~~e~r-~~f~~~~r~d~~~--~~~~s~~~~~~~~-----yve~~~a~~~~~kl~~~~~ge 1273 (3164)
T COG5245        1213 YVKK-------K---YF-DADMELR-QFFLMFNREDMEA--RLADSKMEYEVER-----YVEKTKAEVSSLKLELSSVGE 1273 (3164)
T ss_pred             hhHH-------H---Hh-hhhHHHH-HHHHHHhHHhhhh--hhccceEEEehHH-----HHHHHHhhhccceeeeccCCC
Confidence            2222       2   33 3578999 9999999953221  1246789999997     899999999999999999999


Q ss_pred             eeecCCCceEEEEeCCCCCCCCCC
Q psy17620        717 RIRLLAHCQLLFEIHPIQSDSHPR  740 (741)
Q Consensus       717 ri~l~~~~rliFE~~~L~~aSPAt  740 (741)
                      +       +++||  +|. .+|||
T Consensus      1274 ~-------~v~~~--nl~-s~~~~ 1287 (3164)
T COG5245        1274 G-------QVVVS--NLG-SIGDK 1287 (3164)
T ss_pred             c-------eEEEe--eCC-Cccch
Confidence            8       89998  887 77775

>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules

Probab=99.90  E-value=2.1e-24  Score=241.34  Aligned_cols=141  Identities=36%  Similarity=0.555  Sum_probs=127.2

Q ss_pred             hhhccccccccceEE-----EEccchHHHHHHHHhcchhhhhccchhhhhhcccchhhhhhhhhhhccccccccchhhhH
Q psy17620        155 GELTKNDRKKFNTVL-----IVDVHARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLE  229 (741)
Q Consensus       155 ~Qlr~yw~~~~~~~~-----~idv~~r~vye~~~~~~~~~~~~~~~~e~~~f~~~~~v~~~w~~~~~~f~~~~~~~~~~~  229 (741)
                      ++--..|..++..+.     |.++|.+|+|.+.+|.++ +++.++|.|+++|+.   |++.|+.                
T Consensus       203 ~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~if~~~-di~~~lp~e~~~F~~---i~~~~~~----------------  262 (408)
T PF08393_consen  203 RDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEPIFSSS-DIKKQLPKEAKKFSS---IDKEWRS----------------  262 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CHCCCTHHHHHHHHH---HHHHHHH----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHH---cChHHHH----------------
Confidence            444555665665443     779999999999999887 999999999999999   9999999                


Q ss_pred             HHHHHhhhcCccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccCcHHHHHHhcC-CCchhhhhhHH
Q psy17620        230 SVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGS-SSPTAIQEHIV  308 (741)
Q Consensus       230 ~~im~~~~~~~~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~~yLe~kR~~FPRFyFLsn~dLL~ils~-~~~~~i~~hl~  308 (741)
                        +|.++.++|+|+++|..+++.+.|+.+++.|+.|+|+|++|||+||..|||||||||+|||+|||+ +||..+++|++
T Consensus       263 --i~~~~~~~~~v~~~~~~~~~~~~l~~~~~~l~~i~k~L~~~Le~kR~~FPRfyFlsd~eLl~ils~~~~~~~i~~~l~  340 (408)
T PF08393_consen  263 --IMKRAQKDPNVLSVCSNPDLLEKLESINESLEKIQKSLNDYLESKREAFPRFYFLSDDELLEILSQSKDPEQIQPHLK  340 (408)
T ss_dssp             --HHHHHHCT-CCHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHC-HHHHHHHHHTTTTCHHHHHHHH
T ss_pred             --HHHHHHhCcchhHHhhHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccceeecCcHHHHHHHHcCCChHHHHHHHH
Confidence              999999999999999999999999999999999999999999999999999999999999999998 59999999999


Q ss_pred             HHhhhcCCc
Q psy17620        309 KFAAKIMDA  317 (741)
Q Consensus       309 k~f~~I~~~  317 (741)
                      |||++|.+.
T Consensus       341 k~F~~i~~l  349 (408)
T PF08393_consen  341 KCFPGIKSL  349 (408)
T ss_dssp             HCCSSEEEE
T ss_pred             HHHHHHHHH
Confidence            999988644

Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=99.83  E-value=1.2e-19  Score=213.51  Aligned_cols=299  Identities=22%  Similarity=0.302  Sum_probs=210.3

Q ss_pred             HHHHHHHHHHhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCce-eEee-c--ceEEecCCceEEEeccC-CC
Q psy17620        408 FLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATR-FQFE-G--HDIIMNNKVGIFITMNP-GY  482 (741)
Q Consensus       408 ~~~~~ri~~Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~-~~~~-g--~~i~l~~~~~iFiTmNp-gy  482 (741)
                      |..+..++.-+..+|-|+.+||+|..+.+.|..|++.+..       .... +..| |  +.|..||+|.+|.+||| +.
T Consensus       622 F~fveG~Lvk~~r~GeWlLLDEINLas~eTLe~I~~lL~~-------~es~ilLsE~GD~~Pi~~Hp~FrlFgCMNP~tD  694 (4600)
T COG5271         622 FVFVEGILVKCMRNGEWLLLDEINLASEETLELIDGLLGK-------KESGILLSESGDLRPIRIHPGFRLFGCMNPGTD  694 (4600)
T ss_pred             EEEehhhHHHHHhcCceEEeeccccccHHHHHHHHhhhcC-------cccceeeeccCCccccccCCCceEEeecCCCcc
Confidence            3344456777888999999999999999999988765543       2222 3333 3  57899999999999999 56


Q ss_pred             CCCCCchHHHhhcceeeeccCCCH-----HHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhh---------cCCcccc
Q psy17620        483 AGRTELPESVKALFRPVVCIVPDF-----ELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLS---------KQCHYDF  548 (741)
Q Consensus       483 ~gr~eLP~nLk~lFRpvam~~PD~-----~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls---------~q~hydf  548 (741)
                      .|+.+||..+|+.|..|.+..|+.     -.|+.-++-+... .-...++++..+|..++..--         ..+||  
T Consensus       695 vGKr~le~~~rsrFteIyVhsp~~~l~DllsII~kyig~y~I-s~E~v~~~IaElyleaKslsl~~~lvdga~q~Ph~--  771 (4600)
T COG5271         695 VGKRKLEGSFRSRFTEIYVHSPSTSLKDLLSIIHKYIGRYEI-SEERVSRKIAELYLEAKSLSLGKELVDGAVQEPHV--  771 (4600)
T ss_pred             cccccCCcccccceeEEEEeCccccHHHHHHHHHHHHhheec-chHHHhHHHHHHHHHHHHhccCCeeccCcCCCccc--
Confidence            799999999999999999999954     3455554433333 235567899999988875421         22565  


Q ss_pred             chhhHHHHHHHhhHh------Hhh-hc----------c-chHHHHHHHHHHhc-------------cCCCcchhh-----
Q psy17620        549 GMRALKSVLVMAGEL------KRA-AL----------Q-LEESVVLMRALRDM-------------NLPKFVSED-----  592 (741)
Q Consensus       549 gLRalksVL~~a~~l------~~~-~~----------~-~~E~~~l~ral~~~-------------~lPkl~~~D-----  592 (741)
                      ..|++-.+|.+..+.      +|. +.          + .+|. ++..-+..+             ..||-...|     
T Consensus       772 s~RTL~RtL~yVt~i~~iyglrrSlYegFcmsflTlLD~~Ses-il~~~~~kftlg~l~~~~ai~kq~p~~p~~~yi~f~  850 (4600)
T COG5271         772 SGRTLVRTLNYVTNIGEIYGLRRSLYEGFCMSFLTLLDFVSES-ILVSLLSKFTLGLLESQNAIEKQKPKVPDHSYIAFC  850 (4600)
T ss_pred             chHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHhcccccchhhhhcCCCCCCccHHHHH
Confidence            567766666554322      111 00          0 1121 121111111             134332222     


Q ss_pred             --------------------------HH-HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620        593 --------------------------VV-QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS  645 (741)
Q Consensus       593 --------------------------v~-qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t  645 (741)
                                                .+ -.-.+...+.+++|.||+.||||+++..|++....    -.+.+-|+....
T Consensus       851 hyw~~~g~~~veeq~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tgh----kfVRINNHEHTd  926 (4600)
T COG5271         851 HYWKHGGSFPVEEQEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGH----KFVRINNHEHTD  926 (4600)
T ss_pred             HHHHhcCCCchhhcceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCc----cEEEecCcccch
Confidence                                      11 12344456789999999999999999999998642    234455677777


Q ss_pred             cccccccccCC---CCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeec
Q psy17620        646 VIELYGVLNPE---TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRL  720 (741)
Q Consensus       646 ~~eLyG~~d~~---t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l  720 (741)
                      .+|+.|.|-.+   +-++++|++.-++|           ...|||+|  .-+.....|.||.+||||+.|.+|..+.+..
T Consensus       927 lqeYiGTyvTdd~G~lsFkEGvLVeAlR-----------~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~  995 (4600)
T COG5271         927 LQEYIGTYVTDDDGSLSFKEGVLVEALR-----------RGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVV  995 (4600)
T ss_pred             HHHHhhceeecCCCceeeehhHHHHHHh-----------cCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeec
Confidence            89999998322   24799999999999           34899999  5567789999999999999999998888888


Q ss_pred             CCCceEEEEeCC
Q psy17620        721 LAHCQLLFEIHP  732 (741)
Q Consensus       721 ~~~~rliFE~~~  732 (741)
                      |+.-.++|-|++
T Consensus       996 PHp~F~lFATQN 1007 (4600)
T COG5271         996 PHPNFRLFATQN 1007 (4600)
T ss_pred             cCCCeeEEeecC
Confidence            888888999887

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=99.75  E-value=3e-17  Score=193.96  Aligned_cols=279  Identities=23%  Similarity=0.385  Sum_probs=197.7

Q ss_pred             HhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEe-e-c---ceEEecCCceEEEeccC-CCCCCCCchH
Q psy17620        417 GLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQF-E-G---HDIIMNNKVGIFITMNP-GYAGRTELPE  490 (741)
Q Consensus       417 Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~-~-g---~~i~l~~~~~iFiTmNp-gy~gr~eLP~  490 (741)
                      -+..+|-...+||++..+.+||..+-+-+.        ...+..+ | |   .++..+.+|++|+|||| |.-|+.||.+
T Consensus      1289 ~AMk~GdfFLlDEIsLAdDSVLERLNSVLE--------~~RtL~l~E~g~a~~~vtA~dgF~ffATMNPGGDyGKkELSP 1360 (4600)
T COG5271        1289 KAMKCGDFFLLDEISLADDSVLERLNSVLE--------SQRTLYLTETGNAAEEVTAHDGFRFFATMNPGGDYGKKELSP 1360 (4600)
T ss_pred             HHHhcCCeeEeeeccccchHHHHHHHHhhc--------ccceEEEeecCCccceeeeccCceEEEeeCCCCccchhhCCH
Confidence            467899999999999999999988743333        2233333 2 4   67889999999999999 4558999999


Q ss_pred             HHhhcceeeeccC----CCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccc--cchhhHHHHHHHhhHhH
Q psy17620        491 SVKALFRPVVCIV----PDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYD--FGMRALKSVLVMAGELK  564 (741)
Q Consensus       491 nLk~lFRpvam~~----PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hyd--fgLRalksVL~~a~~l~  564 (741)
                      .||..|..+.+.+    -|.-.|+++-|.   | +-..||++++.+++-....+    -|.  .++|.+.++.....+.+
T Consensus      1361 ALRNRFTEiwvp~m~D~~d~~~iv~~~l~---~-~~vdla~p~ve~~kw~a~~l----~~~~vISiRd~l~~VEFIn~~~ 1432 (4600)
T COG5271        1361 ALRNRFTEIWVPVMSDEADLIFIVLVDLR---F-GEVDLAKPSVETFKWLARSL----LYNDVISIRDLLLIVEFINRRE 1432 (4600)
T ss_pred             HHhcccceEeecccccccchhhhhhhhhh---c-CcccccchHHHHHHHHHHHh----hccCceeHHHHHHHHHHHHHHH
Confidence            9999999998752    245555555543   3 35779999999988443322    233  45565544433222111


Q ss_pred             hhhc----------------------cc--------hHHH---HHHHHHH------------------------hccCCC
Q psy17620        565 RAAL----------------------QL--------EESV---VLMRALR------------------------DMNLPK  587 (741)
Q Consensus       565 ~~~~----------------------~~--------~E~~---~l~ral~------------------------~~~lPk  587 (741)
                      -.+.                      ..        +|..   +=+.++.                        ++-+|.
T Consensus      1433 i~d~~~~l~~~~smvfidalG~fst~~laen~~dl~s~r~~c~v~l~~L~g~~i~~~~~~~n~i~f~d~~~f~g~f~iP~ 1512 (4600)
T COG5271        1433 ILDLNLVLFNAVSMVFIDALGEFSTVALAENGLDLESERQRCFVWLEALEGAGIKGIEADVNAIYFEDERMFGGDFVIPY 1512 (4600)
T ss_pred             hhhhhhHhhhhhhHHHHHHhcccchhHHhhcccchhHHHHHHHHHHHHhccCCceeeecccceeEecccceecccccccc
Confidence            0000                      00        1111   1122221                        123454


Q ss_pred             cchhh---------------HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc-cccccc
Q psy17620        588 FVSED---------------VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYG  651 (741)
Q Consensus       588 l~~~D---------------v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t-~~eLyG  651 (741)
                      ++...               +..+.++|+++.+++|.|.||.|||+++..||+..+     .++.+||-.-.| ..+|||
T Consensus      1513 ~~~~~S~Ssf~l~spTT~~Nl~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~tG-----~kliRINLSeQTdL~DLfG 1587 (4600)
T COG5271        1513 LVEHHSSSSFDLESPTTTVNLRRVLRAMQVGKPILLEGSPGVGKTSLITALARKTG-----KKLIRINLSEQTDLCDLFG 1587 (4600)
T ss_pred             ccccccCccccccCCchHHhHHHHHHHHhcCCceeecCCCCccHHHHHHHHHHHhc-----CceEEeeccccchHHHHhC
Confidence            43221               567889999999999999999999999999999864     467788876654 589999


Q ss_pred             cccCCC--C--CcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCC-eeecCCCc
Q psy17620        652 VLNPET--R--DWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGE-RIRLLAHC  724 (741)
Q Consensus       652 ~~d~~t--~--eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGe-ri~l~~~~  724 (741)
                      +.-|..  +  -|.|..|-++||           +..|+++|  .-+..+.+|.||++||..+...+|.-+ .+..+|++
T Consensus      1588 sd~Pve~~Gef~w~dapfL~amr-----------~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~Hpnf 1656 (4600)
T COG5271        1588 SDLPVEEGGEFRWMDAPFLHAMR-----------DGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNF 1656 (4600)
T ss_pred             CCCCcccCceeEecccHHHHHhh-----------cCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCe
Confidence            998875  3  399999999998           45899999  667889999999999999999999765 46678887


Q ss_pred             eEE
Q psy17620        725 QLL  727 (741)
Q Consensus       725 rli  727 (741)
                      |++
T Consensus      1657 rVF 1659 (4600)
T COG5271        1657 RVF 1659 (4600)
T ss_pred             eee
Confidence            764

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=99.75  E-value=8.4e-19  Score=206.36  Aligned_cols=326  Identities=25%  Similarity=0.447  Sum_probs=224.9

Q ss_pred             cccccccccCCCCCceec-cchhH--HHHHHHHHHHc----ccCCC--C-C--C-------------------CCHHHHH
Q psy17620        364 SFEYGYEYMGLNGRLVIT-PLTDR--IYLTITQALSM----RLGAA--P-A--G-------------------MDFLAFG  412 (741)
Q Consensus       364 ~~~YgyEYlG~~~rLViT-PLTdR--c~~tl~~Al~~----~~GGa--p-~--~-------------------~d~~~~~  412 (741)
                      .+|||+||. .+.-+|.+ ||.+|  .+.++.-....    ++.||  | .  |                   ..-+++.
T Consensus      1573 nLp~~~~y~-~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~v~vf~~ype~~SL~ 1651 (3164)
T COG5245        1573 NLPYGFEYY-PPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKPVFVFCCYPELASLR 1651 (3164)
T ss_pred             CCccccccC-CCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCceEEEecCcchhhHH
Confidence            389999995 44666777 99998  55554444332    12232  2 1  1                   2247889


Q ss_pred             HHHHHhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHH
Q psy17620        413 KILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESV  492 (741)
Q Consensus       413 ri~~Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nL  492 (741)
                      +|+- +.--|+..||||||++..+..++-...++...                    .++..|.+||-+|.+| |||..|
T Consensus      1652 ~Iye-a~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k--------------------~~~k~~lq~~y~y~pR-eLtR~l 1709 (3164)
T COG5245        1652 NIYE-AVLMGSYLCFDEFNRLSEETMSASVELYLSSK--------------------DKTKFFLQMNYGYKPR-ELTRSL 1709 (3164)
T ss_pred             HHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------------------HhhhhhcccccccChH-HHHHHH
Confidence            9998 77789999999999999999998766666543                    3567789999999999 999999


Q ss_pred             hhcce--eeeccCCCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccccchhhHHHHHH-HhhH--hHhh-
Q psy17620        493 KALFR--PVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLV-MAGE--LKRA-  566 (741)
Q Consensus       493 k~lFR--pvam~~PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hydfgLRalksVL~-~a~~--l~~~-  566 (741)
                      ++.|-  .-....||..+|.--..-     ..+.++.+++.--   ...-+.|.||+||+|++..... ..++  +... 
T Consensus      1710 r~i~~yaeT~~~t~~~slI~~wy~e-----a~r~~~dRLV~qk---E~st~~q~ly~~~~~~~~e~~~g~i~e~~I~fS~ 1781 (3164)
T COG5245        1710 RAIFGYAETRIDTPDVSLIIDWYCE-----AIREKIDRLVQQK---ESSTSRQDLYDFGLRAIREMIAGHIGEAEITFSM 1781 (3164)
T ss_pred             HHHHhHHhcCCCCCcHHHHHHHHHH-----HHHHHHHHHHHHH---hcchHHHHHHHHHHHhhhhhhhcccchhhhhHHH
Confidence            99998  667788999988754321     2455555555432   2234578999999999874322 1111  0000 


Q ss_pred             -------hccchHHHHHHHHHHh------ccCCCcchhh----HHHHHHHhhc-cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        567 -------ALQLEESVVLMRALRD------MNLPKFVSED----VVQMYETMLT-RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       567 -------~~~~~E~~~l~ral~~------~~lPkl~~~D----v~qL~e~l~~-r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                             ......-...+...+.      .+.|-...+|    ++...+.+.+ ..-.|+.|..+.||+.+.+..+    
T Consensus      1782 Il~~g~~~l~k~dl~~fvEe~~K~F~sshl~v~~V~~~~~l~HiLr~~R~l~~vggh~~l~g~~~~g~~~~~efvc---- 1857 (3164)
T COG5245        1782 ILFFGMACLLKKDLAVFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVC---- 1857 (3164)
T ss_pred             HHhccHHHHhhhhHHHHHHHHHHHhcccCCCCceeeeHHHHHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHHHH----
Confidence                   0001111122222222      2233333344    3344444433 2223455666666665555543    


Q ss_pred             cCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEcC-CCChhhhhhccccccCC
Q psy17620        629 VLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDG-DVDALWIENMNSVMDDN  707 (741)
Q Consensus       629 ~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfDG-~vd~~wiE~LNsvLDdn  707 (741)
                               .+||  .++-|++|.-|..+.+|.|-+...++|..-..     ....|+|+|| |+.+.|+|.||++||.|
T Consensus      1858 ---------wlN~--~~m~e~~~hr~~~~~Df~d~lk~~~~~~~~~~-----~r~Cl~I~Esi~~es~fLe~~N~LL~n~ 1921 (3164)
T COG5245        1858 ---------WLNP--RNMREIFGHRDELTGDFRDSLKVQDLRRNIHG-----GRECLFIFESIPVESSFLEDFNPLLDNN 1921 (3164)
T ss_pred             ---------HhCc--cchhhhhcccccchhhHHHHHHHHHHhccccC-----CceEEEEecCCccchHHHHHhhhhhhcc
Confidence                     2344  45579999999999999999999998865322     3568999999 99999999999999999


Q ss_pred             ceeeccCC-CeeecCCCceEEEEeCCCCCCCCCC
Q psy17620        708 KILTLANG-ERIRLLAHCQLLFEIHPIQSDSHPR  740 (741)
Q Consensus       708 k~L~L~nG-eri~l~~~~rliFE~~~L~~aSPAt  740 (741)
                      +.+||.+| |++.+|.|.|.+||.+.|..-||||
T Consensus      1922 ~~~~lf~gne~~~I~~nlr~~~es~~L~~dTe~t 1955 (3164)
T COG5245        1922 RFLCLFSGNERIRIPENLRFVFESTSLEKDTEAT 1955 (3164)
T ss_pred             ccchhccchhHHHHHHHHHhhhhccccccCCHHH
Confidence            99999999 9999999999999999999999985

>KOG1808|consensus

Probab=99.46  E-value=2.5e-13  Score=169.16  Aligned_cols=299  Identities=21%  Similarity=0.276  Sum_probs=196.5

Q ss_pred             HHHHHHHHHHhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEee-c--ceEEecCCceEEEeccCCC-C
Q psy17620        408 FLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFE-G--HDIIMNNKVGIFITMNPGY-A  483 (741)
Q Consensus       408 ~~~~~ri~~Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~-g--~~i~l~~~~~iFiTmNpgy-~  483 (741)
                      +......+.-+...|-|...||.|..+.+.|-.+++-+..        ..-+..+ |  +.+..||++.+|..|||++ .
T Consensus       199 f~~~~g~~~~~~~~g~w~lldeinla~~~~l~~i~~vl~~--------~~i~l~e~~d~~~l~~hp~f~~f~cmnp~td~  270 (1856)
T KOG1808|consen  199 FVFVPGALVETISNGEWLLLDEINLASAETLELISQVLGK--------CSILLSERGDYTPLKIHPNFRIFACMNPATDV  270 (1856)
T ss_pred             hhhchhhHHHHHhccchhhhhhhccchHHHHHHHHHhccC--------ceeeccccccccccCCCcchhhhhccCccchh
Confidence            3444445556788999999999999999999998766554        1111112 1  3567899999999999955 5


Q ss_pred             CCCCchHHHhhcceeeeccCCCHH--HHHHHHHhhcCccchHHHHHHHHHHHHHHHHHh----hcCCccccchhhHHHHH
Q psy17620        484 GRTELPESVKALFRPVVCIVPDFE--LICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQL----SKQCHYDFGMRALKSVL  557 (741)
Q Consensus       484 gr~eLP~nLk~lFRpvam~~PD~~--~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~l----s~q~hydfgLRalksVL  557 (741)
                      |+..+|...+..|+..++..|...  .++-+.....  .-......+++.+|.-.+...    -..+||  .+|.+...|
T Consensus       271 gK~~l~~~~r~~~te~~v~~~~~~~~~~l~~~~~~~--~i~~e~v~~~~e~~~~~k~~~~~dg~~~~~~--s~r~l~raL  346 (1856)
T KOG1808|consen  271 GKRDLKPGKRNRFTEFSVHTSLEDADLSLSVVDKYI--AISSEPVRNIVELYLSAKSLSLVDGNQRPLY--SIRTLCRAL  346 (1856)
T ss_pred             hhhhcCcchhcceEEEEEechhhhhhhhhhhhcccc--ccchhhHHhHHHHhhhccccccccccccchh--hhhhHHHHH
Confidence            999999999999999999877432  2222222222  122233333555555443322    012333  566666665


Q ss_pred             HHhhHhHhhh-------------c---cchHHHHH----HHHHH-hccCCCcc--------------hhh----------
Q psy17620        558 VMAGELKRAA-------------L---QLEESVVL----MRALR-DMNLPKFV--------------SED----------  592 (741)
Q Consensus       558 ~~a~~l~~~~-------------~---~~~E~~~l----~ral~-~~~lPkl~--------------~~D----------  592 (741)
                      +..-.-....             +   +..+..++    .++.. -..+|+-.              .++          
T Consensus       347 ~~v~~~~~~~~~~slyE~~~~sflt~le~~s~~~~~~l~~~~~~~~~q~P~~~~~~~~~i~~gs~~~~~~~~~i~T~~vq  426 (1856)
T KOG1808|consen  347 RIVLDSLPAEVDRSLYEAFCMSFLTQLEGESHKRLVKLIQRALLITKQVPASPRFEGYWIPSGSELTSEATHYIITPRVQ  426 (1856)
T ss_pred             HHHHHhhhhhhhcchHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcccCCCCcccceeecCCCCccccccceeeccHHHH
Confidence            5432211110             0   11111111    11111 11223211              111          


Q ss_pred             --HHHHHHHhhcc-ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccc-cccCCCC--CcccChHH
Q psy17620        593 --VVQMYETMLTR-HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYG-VLNPETR--DWYDGLLS  666 (741)
Q Consensus       593 --v~qL~e~l~~r-~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG-~~d~~t~--eW~DGvls  666 (741)
                        ...+-.+...+ .+++|.||++||||++++-|+.+.+.    -.+.+.|+...+..++.| ++...++  .|++|++.
T Consensus       427 ~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~g~----~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV  502 (1856)
T KOG1808|consen  427 KNLADLARAISSGKFPILLQGPTSSGKTSIIKELARATGK----NIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLV  502 (1856)
T ss_pred             HHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHhcc----CceehhccccchHHHHHHhhhcCCCCCeeeehhHHH
Confidence              22233444443 69999999999999999999999752    234455677778899999 4444444  69999999


Q ss_pred             HHHHHhcCCCCCCCCCCeEEEEcC--CCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620        667 NIFRAVNKPLDPGSKERKYILFDG--DVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI  733 (741)
Q Consensus       667 ~i~R~~~~~~~~~~~~~~WIVfDG--~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L  733 (741)
                      .++|           +..|+||||  -+....+|.||.++|||+.|.+|+|.|..-++...++|-|.+-
T Consensus       503 ~Alr-----------~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~  560 (1856)
T KOG1808|consen  503 QALR-----------NGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNP  560 (1856)
T ss_pred             HHHH-----------hCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccC
Confidence            9999           448999997  3567899999999999999999999999999999999977653

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.25  E-value=5.5e-12  Score=119.95  Aligned_cols=115  Identities=20%  Similarity=0.358  Sum_probs=88.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccC--CCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP--ETRDWYDGLLSNIFRAVNKPLDPGSKE  682 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~--~t~eW~DGvls~i~R~~~~~~~~~~~~  682 (741)
                      +|+|+||||+|||++++.+++.+.   .++... --+...+.++|+|.+++  ...+|.||.+...++           .
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~---~~~~~i-~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-----------~   65 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLG---RPVIRI-NCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-----------K   65 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHT---CEEEEE-E-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-----------E
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhh---cceEEE-Eeccccccccceeeeeeccccccccccccccccc-----------c
Confidence            589999999999999999999983   233333 33445777999999987  456899999998888           3


Q ss_pred             CeEEEEcCC--CChhhhhhccccccCCceeeccCCCeeecCC------CceEEEEeCCCC
Q psy17620        683 RKYILFDGD--VDALWIENMNSVMDDNKILTLANGERIRLLA------HCQLLFEIHPIQ  734 (741)
Q Consensus       683 ~~WIVfDG~--vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~------~~rliFE~~~L~  734 (741)
                      ..|+++|+-  +++..++.|+++||+++......++.+..++      ++++|+.+..-.
T Consensus        66 ~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~  125 (139)
T PF07728_consen   66 GGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD  125 (139)
T ss_dssp             EEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred             eeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence            489999954  5799999999999998887777777787776      489999888766

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=98.98  E-value=2.9e-09  Score=115.07  Aligned_cols=125  Identities=22%  Similarity=0.279  Sum_probs=95.7

Q ss_pred             HHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccccc----CC--CCCcccChHHH
Q psy17620        594 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLN----PE--TRDWYDGLLSN  667 (741)
Q Consensus       594 ~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d----~~--t~eW~DGvls~  667 (741)
                      ..+...+..+..|+|.||||+|||++.+.+++.++   .+......++ .++..++.|..-    ..  ..+|.||.+..
T Consensus        55 ~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~---~~~~rV~~~~-~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~  130 (327)
T TIGR01650        55 KAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLN---WPCVRVNLDS-HVSRIDLVGKDAIVLKDGKQITEFRDGILPW  130 (327)
T ss_pred             HHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHC---CCeEEEEecC-CCChhhcCCCceeeccCCcceeEEecCcchh
Confidence            34555566788899999999999999999999975   3444333343 366688999732    11  14899999999


Q ss_pred             HHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeecc-CCCeeecCCCceEEEEeCCC
Q psy17620        668 IFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLA-NGERIRLLAHCQLLFEIHPI  733 (741)
Q Consensus       668 i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~-nGeri~l~~~~rliFE~~~L  733 (741)
                      +++           .+.|++||  .-++|.-...||++||+.+.|+++ .|+.|..+|.+|+|.-....
T Consensus       131 A~~-----------~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~  188 (327)
T TIGR01650       131 ALQ-----------HNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI  188 (327)
T ss_pred             HHh-----------CCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence            887           45899999  456888999999999999999987 56777777888888765544

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=98.94  E-value=6.9e-09  Score=109.90  Aligned_cols=132  Identities=17%  Similarity=0.165  Sum_probs=104.6

Q ss_pred             hhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEee-----cceEEecCCceEEEeccC-CCCCCCCchHH
Q psy17620        418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFE-----GHDIIMNNKVGIFITMNP-GYAGRTELPES  491 (741)
Q Consensus       418 laq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~-----g~~i~l~~~~~iFiTmNp-gy~gr~eLP~n  491 (741)
                      ++..|.|+++||+||++.++.+.+.+.       +..  ..+.+.     +..+.++|+|.+++|+|| .|+|..++|+.
T Consensus       102 A~~~g~~lllDEi~r~~~~~q~~Ll~~-------Le~--~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~a  172 (262)
T TIGR02640       102 AVREGFTLVYDEFTRSKPETNNVLLSV-------FEE--GVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDA  172 (262)
T ss_pred             HHHcCCEEEEcchhhCCHHHHHHHHHH-------hcC--CeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHH
Confidence            345688999999999999998877433       322  233332     356789999999999998 59999999999


Q ss_pred             HhhcceeeeccCCCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccccchhhHHHHHHHhhHh
Q psy17620        492 VKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGEL  563 (741)
Q Consensus       492 Lk~lFRpvam~~PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hydfgLRalksVL~~a~~l  563 (741)
                      |+..|..+.+..||.+.-.+|....  |.-+..++.+++.++..++   +.+.++..|.|+.-.+.+.+...
T Consensus       173 L~~R~~~i~i~~P~~~~e~~Il~~~--~~~~~~~~~~iv~~~~~~R---~~~~~~~~~~r~~i~~~~~~~~~  239 (262)
T TIGR02640       173 LLDRLITIFMDYPDIDTETAILRAK--TDVAEDSAATIVRLVREFR---ASGDEITSGLRASLMIAEVATQQ  239 (262)
T ss_pred             HHhhcEEEECCCCCHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHH---hhCCccCCcHHHHHHHHHHHHHc
Confidence            9999999999999998888876543  4567889999999999888   45677888988877776665554

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=98.86  E-value=1.4e-08  Score=107.64  Aligned_cols=122  Identities=16%  Similarity=0.310  Sum_probs=92.7

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccC-------------------
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP-------------------  655 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~-------------------  655 (741)
                      ++...+..+..|+|.||||+|||++.+.+++.+   |.++.....++ ..+..++.|.+.+                   
T Consensus        13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~-~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~   88 (262)
T TIGR02640        13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDA-ELTTSDLVGSYAGYTRKKVHDQFIHNVVKLED   88 (262)
T ss_pred             HHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCc-cCCHHHHhhhhcccchhhHHHHHHHHhhhhhc
Confidence            455667788999999999999999999999865   55655555554 4445677776532                   


Q ss_pred             -CCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEcC--CCChhhhhhccccccCCceeeccC----CCeeecCCCceEEE
Q psy17620        656 -ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDG--DVDALWIENMNSVMDDNKILTLAN----GERIRLLAHCQLLF  728 (741)
Q Consensus       656 -~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfDG--~vd~~wiE~LNsvLDdnk~L~L~n----Geri~l~~~~rliF  728 (741)
                       ...+|.||.+..+++           .+.|+++|.  .+++.....|+++|++ +.+++++    |+.+..++++|+|+
T Consensus        89 ~~~~~~~~g~l~~A~~-----------~g~~lllDEi~r~~~~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~~~~~frvIa  156 (262)
T TIGR02640        89 IVRQNWVDNRLTLAVR-----------EGFTLVYDEFTRSKPETNNVLLSVFEE-GVLELPGKRGTSRYVDVHPEFRVIF  156 (262)
T ss_pred             ccceeecCchHHHHHH-----------cCCEEEEcchhhCCHHHHHHHHHHhcC-CeEEccCCCCCCceEecCCCCEEEE
Confidence             113699999888776           236999994  4788999999999997 6788875    46788999999988


Q ss_pred             EeCC
Q psy17620        729 EIHP  732 (741)
Q Consensus       729 E~~~  732 (741)
                      -...
T Consensus       157 TsN~  160 (262)
T TIGR02640       157 TSNP  160 (262)
T ss_pred             eeCC
Confidence            6553

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>KOG1808|consensus

Probab=98.80  E-value=2.1e-08  Score=126.17  Aligned_cols=331  Identities=22%  Similarity=0.242  Sum_probs=198.9

Q ss_pred             ccccccCCCCCceeccchhHHHHHHHHHHHcc------cCCCCC------------------------CCCHH-HHH---
Q psy17620        367 YGYEYMGLNGRLVITPLTDRIYLTITQALSMR------LGAAPA------------------------GMDFL-AFG---  412 (741)
Q Consensus       367 YgyEYlG~~~rLViTPLTdRc~~tl~~Al~~~------~GGap~------------------------~~d~~-~~~---  412 (741)
                      -|-|-.-+..-.|+||-..+--..+++|...+      .|++-+                        .+|++ .+|   
T Consensus       408 ~gs~~~~~~~~~i~T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~  487 (1856)
T KOG1808|consen  408 SGSELTSEATHYIITPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYV  487 (1856)
T ss_pred             CCCccccccceeeccHHHHHHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhh
Confidence            44445555666999999999999999999876      243322                        35553 344   


Q ss_pred             -----------HHHHHhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeec-ceEEecCCceEEEeccC
Q psy17620        413 -----------KILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEG-HDIIMNNKVGIFITMNP  480 (741)
Q Consensus       413 -----------ri~~Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g-~~i~l~~~~~iFiTmNp  480 (741)
                                 -.+.+++--|.|..|||+|+.+.+||.++       +..+..+.+-+..++ +.+..||++.+|.|.||
T Consensus       488 ~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aL-------nrllddnRel~ipe~~rlv~~h~~f~lfatqn~  560 (1856)
T KOG1808|consen  488 ADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEAL-------NRLLDDNRELFIPETQRLVKAHPEFMLFATQNP  560 (1856)
T ss_pred             cCCCCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHH-------HhhhhhhccccccccceeeccCcchhhhhhccC
Confidence                       25778899999999999999999999987       344445566677775 56889999999999999


Q ss_pred             C--CCCCCCchHHHhhcceeeecc---CCCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHH--HHhh-----------c
Q psy17620        481 G--YAGRTELPESVKALFRPVVCI---VPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSK--EQLS-----------K  542 (741)
Q Consensus       481 g--y~gr~eLP~nLk~lFRpvam~---~PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~--e~ls-----------~  542 (741)
                      .  |+||+.|-.+++..|-.+-+.   .+.+..|.+     .+-..+...++|++..|.-.+  +++|           .
T Consensus       561 ~~~y~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~~-----~~~~i~~~~~~k~~~~~~~L~~~rqls~i~e~~~~~gtl  635 (1856)
T KOG1808|consen  561 PGTYGGRKILSRALRNRFIELHFDDIGEEELEEILE-----HRCGIPPSYEKKMVQVMRELSLRRQLSRIFEQKPSFGTL  635 (1856)
T ss_pred             ccccchhhhhhhcccccchhhhhhhcCchhhhhhhc-----ccccCCchHHHHHHHHhhhhhhHHHHhhHHHhccccCCc
Confidence            5  999999999988887765443   333332222     233356788899998888553  3444           2


Q ss_pred             CCccccchhh------HHHHHH------HhhHhHhh-----hccchH----HHHHHHHHHhccCCCcchhhHHHHHHHhh
Q psy17620        543 QCHYDFGMRA------LKSVLV------MAGELKRA-----ALQLEE----SVVLMRALRDMNLPKFVSEDVVQMYETML  601 (741)
Q Consensus       543 q~hydfgLRa------lksVL~------~a~~l~~~-----~~~~~E----~~~l~ral~~~~lPkl~~~Dv~qL~e~l~  601 (741)
                      ++|.+|.+|-      -..-+.      .+.+.+..     .....|    ..+-..++.....|..... .+.-.-.+.
T Consensus       636 rd~f~w~~r~~e~~~~~~~~l~~~g~~~L~~r~r~~~~~~~v~~~~e~~~~~~~~~~~l~~~~t~~m~r~-~~~~~~~~~  714 (1856)
T KOG1808|consen  636 RDLFRWLLRFTETIAESNDQLAENGYMLLSSRQRYEKEKRLVQQPLEKVMRKAVDKDQLSTVWTPGMTRL-TIEKALVLA  714 (1856)
T ss_pred             HHHHHHHhhccccccchhhhhhhhhHHHhhhhhhccchhhhhhccchhhhHHHHHHHHHHhhcchhhhhh-hhhHHHHHH
Confidence            2344444430      000000      00000000     000000    0011111111122222111 111112234


Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc------------cccccccc---CCCCCcccChHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV------------IELYGVLN---PETRDWYDGLLS  666 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~------------~eLyG~~d---~~t~eW~DGvls  666 (741)
                      ....+ ++|++|||||++..+++....     ....+++-.+.+.            ....|..+   ..-.+|+||+++
T Consensus       715 ~~~~~-~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ew~dglLi  788 (1856)
T KOG1808|consen  715 IKEQV-LVGLTGCGDTTVCQILAEKSG-----VALRILNAHEHTEAQRPNVLFRENLQHDEIREDKMLKDLFEWSDGLLI  788 (1856)
T ss_pred             hhcch-hcccccccchhhhhhhhhccc-----ceeeeehhhhhhhhccccccccccchhhHhhhhhhhhccccccCccch
Confidence            45566 999999999999999887653     2233333333331            22233333   122589999999


Q ss_pred             HHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccC-----CCeeecCCCceEE
Q psy17620        667 NIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLAN-----GERIRLLAHCQLL  727 (741)
Q Consensus       667 ~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~n-----Geri~l~~~~rli  727 (741)
                      ..++..           +-++.|  -+++....|.+|++|..-+.|.+..     .+.+...+...++
T Consensus       789 ~a~~~G-----------~~~l~Dei~la~dsvleRln~~Le~~rtL~~~e~~~a~~~~v~A~~~f~~~  845 (1856)
T KOG1808|consen  789 GAQGVG-----------KQFLVDEISLAEDSVLERLNEVLEPDRTLLLLENQTAEEETVIAEEGFQLV  845 (1856)
T ss_pred             hhhhcc-----------chhhhhccccchhhHHHHHHHHhCcccccccccccccchhceeecccchhh
Confidence            999854           334445  3566778999999998877777765     4555555554443

>PHA02244 ATPase-like protein

Probab=98.71  E-value=5.7e-08  Score=106.37  Aligned_cols=118  Identities=14%  Similarity=0.256  Sum_probs=91.7

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcC
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNK  674 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~  674 (741)
                      .+-+.+..+.+|+|.||||||||++.+.++..++   .  .++.+| ...+..++.|..+. .+.|.||.|...++    
T Consensus       111 ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg---~--pfv~In-~l~d~~~L~G~i~~-~g~~~dgpLl~A~~----  179 (383)
T PHA02244        111 DIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD---L--DFYFMN-AIMDEFELKGFIDA-NGKFHETPFYEAFK----  179 (383)
T ss_pred             HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC---C--CEEEEe-cChHHHhhcccccc-cccccchHHHHHhh----
Confidence            4556778899999999999999999999999853   2  345555 22344567786654 35899999988876    


Q ss_pred             CCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCC
Q psy17620        675 PLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHP  732 (741)
Q Consensus       675 ~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~  732 (741)
                             ...|+++|  +.+++.-...||++||+. .+.+. |+++..++++|+|+-...
T Consensus       180 -------~GgvLiLDEId~a~p~vq~~L~~lLd~r-~l~l~-g~~i~~h~~FRlIATsN~  230 (383)
T PHA02244        180 -------KGGLFFIDEIDASIPEALIIINSAIANK-FFDFA-DERVTAHEDFRVISAGNT  230 (383)
T ss_pred             -------cCCEEEEeCcCcCCHHHHHHHHHHhccC-eEEec-CcEEecCCCEEEEEeeCC
Confidence                   34799999  556788999999999875 66665 778999999999986654

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=98.54  E-value=7.1e-07  Score=96.74  Aligned_cols=133  Identities=19%  Similarity=0.237  Sum_probs=98.3

Q ss_pred             hhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEee--cceEEecCCceEEEeccC-C-------CCCCCC
Q psy17620        418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFE--GHDIIMNNKVGIFITMNP-G-------YAGRTE  487 (741)
Q Consensus       418 laq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~--g~~i~l~~~~~iFiTmNp-g-------y~gr~e  487 (741)
                      +++.|.|++|||+|++++++++++-..       + +....+.+.  ++.|..||.|.+|+|+|| |       |.|...
T Consensus       131 A~~~g~illlDEin~a~p~~~~~L~~l-------L-E~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~  202 (327)
T TIGR01650       131 ALQHNVALCFDEYDAGRPDVMFVIQRV-------L-EAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQ  202 (327)
T ss_pred             HHhCCeEEEechhhccCHHHHHHHHHH-------h-ccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeec
Confidence            458999999999999999999886322       2 223445553  567878999999999999 4       999999


Q ss_pred             chHHHhhcceee-eccCCCHHHHHHHHHhh-cCcc--chHHHHHHHHHHHHHHHHHh-hcCCccccchhhHHHHHH
Q psy17620        488 LPESVKALFRPV-VCIVPDFELICQIMLFS-EGFL--EAKVLAKKMAVLYKLSKEQL-SKQCHYDFGMRALKSVLV  558 (741)
Q Consensus       488 LP~nLk~lFRpv-am~~PD~~~I~ei~L~s-~GF~--~a~~La~Kl~~l~~l~~e~l-s~q~hydfgLRalksVL~  558 (741)
                      ||+.+...|.-+ .|.-|+.+.=.+|+... .|+.  .++.+.++++.+-...++.. ......-.+-|++....+
T Consensus       203 l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~  278 (327)
T TIGR01650       203 INQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAE  278 (327)
T ss_pred             CCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHH
Confidence            999999999754 78889988888887654 3543  26789999999999888754 222222334455544443

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.26  E-value=5.6e-06  Score=93.12  Aligned_cols=149  Identities=17%  Similarity=0.291  Sum_probs=100.1

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCC--CCeEEEEeCCCccccccccccc
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG--YPARTYTLNPKAVSVIELYGVL  653 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~--~~~~~~~inpka~t~~eLyG~~  653 (741)
                      +..++.++.+|   .+++..+...+..++.++++||||+|||++.+.|+..+..-.  ..+..... +...+..++.|.+
T Consensus       170 ~~~~l~d~~i~---e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtF-HpsySYeDFI~G~  245 (459)
T PRK11331        170 LEDALNDLFIP---ETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQF-HQSYSYEDFIQGY  245 (459)
T ss_pred             HHHHhhcccCC---HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEee-cccccHHHHhccc
Confidence            33444444333   233667888888999999999999999999999998874311  12223333 3345556666555


Q ss_pred             cCC--CCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc----CCCChhhhhhccccccCCc-----eeecc----CCCee
Q psy17620        654 NPE--TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD----GDVDALWIENMNSVMDDNK-----ILTLA----NGERI  718 (741)
Q Consensus       654 d~~--t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD----G~vd~~wiE~LNsvLDdnk-----~L~L~----nGeri  718 (741)
                      -|.  ...|.+|+|..+.+++..+    ...+.++++|    |+++..+-|.+ ++||..+     .+.|+    +++++
T Consensus       246 rP~~vgy~~~~G~f~~~~~~A~~~----p~~~~vliIDEINRani~kiFGel~-~lLE~~~rg~~~~v~l~y~e~d~e~f  320 (459)
T PRK11331        246 RPNGVGFRRKDGIFYNFCQQAKEQ----PEKKYVFIIDEINRANLSKVFGEVM-MLMEHDKRGENWSVPLTYSENDEERF  320 (459)
T ss_pred             CCCCCCeEecCchHHHHHHHHHhc----ccCCcEEEEehhhccCHHHhhhhhh-hhccccccccccceeeeccccccccc
Confidence            443  3578999999998887543    2367999999    66666666654 4565332     23333    35789


Q ss_pred             ecCCCceEEEEeCCC
Q psy17620        719 RLLAHCQLLFEIHPI  733 (741)
Q Consensus       719 ~l~~~~rliFE~~~L  733 (741)
                      .+|+|++||--+.+-
T Consensus       321 ~iP~Nl~IIgTMNt~  335 (459)
T PRK11331        321 YVPENVYIIGLMNTA  335 (459)
T ss_pred             cCCCCeEEEEecCcc
Confidence            999999999887543

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.23  E-value=6e-05  Score=90.78  Aligned_cols=113  Identities=23%  Similarity=0.215  Sum_probs=73.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc----cccccccccccCCCCCcccChHHHHHHHhcCCCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA----VSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPG  679 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka----~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~  679 (741)
                      ..++++||||+|||.+.+.|++.+.   .+  ..++|...    .+...|+|.-..-.+....|.++..+|+.       
T Consensus       489 ~~~Lf~GP~GvGKT~lAk~LA~~l~---~~--~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~-------  556 (758)
T PRK11034        489 GSFLFAGPTGVGKTEVTVQLSKALG---IE--LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH-------  556 (758)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC---CC--cEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhC-------
Confidence            3689999999999999999999874   23  33333222    23567888531111234567888888742       


Q ss_pred             CCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620        680 SKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI  733 (741)
Q Consensus       680 ~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L  733 (741)
                        ...-++||  .-+++.....|-.+||++ .++-..|..+.+.+.  +++=|+|+
T Consensus       557 --p~sVlllDEieka~~~v~~~LLq~ld~G-~ltd~~g~~vd~rn~--iiI~TsN~  607 (758)
T PRK11034        557 --PHAVLLLDEIEKAHPDVFNLLLQVMDNG-TLTDNNGRKADFRNV--VLVMTTNA  607 (758)
T ss_pred             --CCcEEEeccHhhhhHHHHHHHHHHHhcC-eeecCCCceecCCCc--EEEEeCCc
Confidence              34789999  446777778888888764 556667776655432  33434443

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.03  E-value=0.00013  Score=88.16  Aligned_cols=114  Identities=22%  Similarity=0.232  Sum_probs=73.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeC--CCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN--PKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE  682 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~in--pka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~  682 (741)
                      .++++||||+|||.+.+.|++.+.   .+.....+.  ....+...+.|....--+.=..|.++..+|+.         .
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~---~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~---------p  553 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALG---VHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKH---------P  553 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhc---CCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhC---------C
Confidence            478999999999999999999873   222222211  22233445555531100111356788888742         4


Q ss_pred             CeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620        683 RKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI  733 (741)
Q Consensus       683 ~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L  733 (741)
                      ..-++||  ..++|.....|-.+||+. .++-..|..+.+.+.  +++-|+|+
T Consensus       554 ~~VvllDEieka~~~~~~~Ll~~ld~g-~~~d~~g~~vd~~~~--iii~Tsn~  603 (731)
T TIGR02639       554 HCVLLLDEIEKAHPDIYNILLQVMDYA-TLTDNNGRKADFRNV--ILIMTSNA  603 (731)
T ss_pred             CeEEEEechhhcCHHHHHHHHHhhccC-eeecCCCcccCCCCC--EEEECCCc
Confidence            5899999  557888888888899865 467777877766643  44445555

>PHA02244 ATPase-like protein

Probab=97.95  E-value=0.00014  Score=80.03  Aligned_cols=121  Identities=16%  Similarity=0.276  Sum_probs=90.3

Q ss_pred             HHHHHHhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccC---C----CCC
Q psy17620        412 GKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNP---G----YAG  484 (741)
Q Consensus       412 ~ri~~Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNp---g----y~g  484 (741)
                      |.++.. ...|.|+++||+|+++.+++..+...+       ..  ..+.+.|..+..||+|.+++|.||   |    |+|
T Consensus       172 gpLl~A-~~~GgvLiLDEId~a~p~vq~~L~~lL-------d~--r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G  241 (383)
T PHA02244        172 TPFYEA-FKKGGLFFIDEIDASIPEALIIINSAI-------AN--KFFDFADERVTAHEDFRVISAGNTLGKGADHIYVA  241 (383)
T ss_pred             hHHHHH-hhcCCEEEEeCcCcCCHHHHHHHHHHh-------cc--CeEEecCcEEecCCCEEEEEeeCCCccCcccccCC
Confidence            445554 467899999999999999988763333       22  256677888999999999999999   3    568


Q ss_pred             CCCchHHHhhcceeeeccCCCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhhc-CCccccchhhH
Q psy17620        485 RTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSK-QCHYDFGMRAL  553 (741)
Q Consensus       485 r~eLP~nLk~lFRpvam~~PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~-q~hydfgLRal  553 (741)
                      +..||+.+...|..|.+.-|+ +  +|..+.+ +       +.+++.+-..++..+.. ...+.++.|.+
T Consensus       242 ~k~L~~AllDRFv~I~~dyp~-~--~E~~i~~-~-------~~~lv~~a~~lR~~~~~~~l~~~~StR~l  300 (383)
T PHA02244        242 RNKIDGATLDRFAPIEFDYDE-K--IEHLISN-G-------DEDLVNFVALLRHEMAEKGLDHVFSMRAI  300 (383)
T ss_pred             CcccCHHHHhhcEEeeCCCCc-H--HHHHHhh-h-------HHHHHHHHHHHHHHHhcCCCCccccHHHH
Confidence            999999999999999999887 3  4544432 1       56888888888876532 23355666654

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=97.70  E-value=6.5e-05  Score=70.88  Aligned_cols=65  Identities=23%  Similarity=0.263  Sum_probs=43.8

Q ss_pred             cceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccC-CCCCCCCchHHHhhcc
Q psy17620        423 AWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNP-GYAGRTELPESVKALF  496 (741)
Q Consensus       423 aW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNp-gy~gr~eLP~nLk~lF  496 (741)
                      .+..+||+||.++.+.|++-       .|+.  ..++.++|.+.++.+.+.|++|+|| ++.|..+||+.+...|
T Consensus        64 ~ill~DEiNrappktQsAlL-------eam~--Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF  129 (131)
T PF07726_consen   64 NILLADEINRAPPKTQSALL-------EAME--ERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF  129 (131)
T ss_dssp             SEEEEETGGGS-HHHHHHHH-------HHHH--HSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred             ceeeecccccCCHHHHHHHH-------HHHH--cCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence            37899999999999999873       3333  3478899999999999999999999 8899999999999877

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.60  E-value=5.5e-05  Score=71.81  Aligned_cols=69  Identities=30%  Similarity=0.356  Sum_probs=45.4

Q ss_pred             cCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecC------CceEEEeccCCCCCCCCchHHHhh
Q psy17620        421 CGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNN------KVGIFITMNPGYAGRTELPESVKA  494 (741)
Q Consensus       421 ~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~------~~~iFiTmNpgy~gr~eLP~nLk~  494 (741)
                      .|.|+++||+|+++.++++.+-       ..+..+.-.+.-.+..+..++      ++.+++||||...++.++++.|+.
T Consensus        65 ~~~il~lDEin~a~~~v~~~L~-------~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~  137 (139)
T PF07728_consen   65 KGGILVLDEINRAPPEVLESLL-------SLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD  137 (139)
T ss_dssp             EEEEEEESSCGG--HHHHHTTH-------HHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT
T ss_pred             ceeEEEECCcccCCHHHHHHHH-------HHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh
Confidence            8999999999999999998873       334332211112234454444      599999999988899999999998


Q ss_pred             cc
Q psy17620        495 LF  496 (741)
Q Consensus       495 lF  496 (741)
                      .|
T Consensus       138 Rf  139 (139)
T PF07728_consen  138 RF  139 (139)
T ss_dssp             T-
T ss_pred             hC
Confidence            87

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>KOG0730|consensus

Probab=97.58  E-value=0.00052  Score=79.40  Aligned_cols=237  Identities=21%  Similarity=0.301  Sum_probs=120.3

Q ss_pred             HHHHHHHHHh--hhcCcceeecccccCCh------hhHHHHHHHHHHHHHHHhhcCceeEee--cceEEecCCce-----
Q psy17620        409 LAFGKILSGL--SQCGAWGCFDEFNRIDV------SVLSVISTQLLTIRTALLINATRFQFE--GHDIIMNNKVG-----  473 (741)
Q Consensus       409 ~~~~ri~~Gl--aq~GaW~cfDEfnrl~~------~vLSvva~qi~~I~~al~~~~~~~~~~--g~~i~l~~~~~-----  473 (741)
                      +-+.++|.-+  -+..+-.-.||++-+-.      .|.+-+..|+.+..+.+....+.+.+.  ++.-.+||...     
T Consensus       264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd  343 (693)
T KOG0730|consen  264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFD  343 (693)
T ss_pred             HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCc
Confidence            4455565432  23367788899987653      358889999999998887666666654  23333444433     


Q ss_pred             --EEEeccCCCCCCCCchHHHhhcceeeeccCCCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccccchh
Q psy17620        474 --IFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMR  551 (741)
Q Consensus       474 --iFiTmNpgy~gr~eLP~nLk~lFRpvam~~PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hydfgLR  551 (741)
                        ++|.+ |+-.||.++   |+.++.-+...  +-...-++--..+||..|.     +..++..+.-+..         |
T Consensus       344 ~ev~Igi-P~~~~RldI---l~~l~k~~~~~--~~~~l~~iA~~thGyvGaD-----L~~l~~ea~~~~~---------r  403 (693)
T KOG0730|consen  344 REVEIGI-PGSDGRLDI---LRVLTKKMNLL--SDVDLEDIAVSTHGYVGAD-----LAALCREASLQAT---------R  403 (693)
T ss_pred             ceeeecC-CCchhHHHH---HHHHHHhcCCc--chhhHHHHHHHccchhHHH-----HHHHHHHHHHHHh---------h
Confidence              34433 444445443   44444444333  2222222222345665332     2222221111100         0


Q ss_pred             hHHHHHHHhhHhHhhhccchHHHHHHHHHHhccCCCcchhh---HHHHHHHh-------------------hccceEEEE
Q psy17620        552 ALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSED---VVQMYETM-------------------LTRHSTMIV  609 (741)
Q Consensus       552 alksVL~~a~~l~~~~~~~~E~~~l~ral~~~~lPkl~~~D---v~qL~e~l-------------------~~r~gv~lv  609 (741)
                      .....+..|..  +-.|.      -+|-+. ..+|+..++|   ..++.+.|                   .--.||+++
T Consensus       404 ~~~~~~~~A~~--~i~ps------a~Re~~-ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLly  474 (693)
T KOG0730|consen  404 RTLEIFQEALM--GIRPS------ALREIL-VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLY  474 (693)
T ss_pred             hhHHHHHHHHh--cCCch------hhhhee-ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEE
Confidence            00001111110  00010      111111 4566666666   11221111                   224599999


Q ss_pred             ecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy17620        610 GPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD  689 (741)
Q Consensus       610 Gp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD  689 (741)
                      ||||||||++.|+++..-.          +|-=+++-.|||--|--+    .+-.+..+||++.+.      .+..|.||
T Consensus       475 GPPGC~KT~lAkalAne~~----------~nFlsvkgpEL~sk~vGe----SEr~ir~iF~kAR~~------aP~IiFfD  534 (693)
T KOG0730|consen  475 GPPGCGKTLLAKALANEAG----------MNFLSVKGPELFSKYVGE----SERAIREVFRKARQV------APCIIFFD  534 (693)
T ss_pred             CCCCcchHHHHHHHhhhhc----------CCeeeccCHHHHHHhcCc----hHHHHHHHHHHHhhc------CCeEEehh
Confidence            9999999999999998642          333455556665444221    133567778877653      34788888


Q ss_pred             CCCChh
Q psy17620        690 GDVDAL  695 (741)
Q Consensus       690 G~vd~~  695 (741)
                       .+|+.
T Consensus       535 -EiDsi  539 (693)
T KOG0730|consen  535 -EIDAL  539 (693)
T ss_pred             -hHHhH
Confidence             34443

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=97.54  E-value=0.00022  Score=70.80  Aligned_cols=120  Identities=19%  Similarity=0.271  Sum_probs=83.0

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC---CCCcccChHHH
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE---TRDWYDGLLSN  667 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~---t~eW~DGvls~  667 (741)
                      ++-.......+|+|+|++||||+.+.+.+.+...+-+  -....+|..+++.    .+|||.....   ....+.|+|..
T Consensus        14 ~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~--~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~   91 (168)
T PF00158_consen   14 QAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKN--GPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQ   91 (168)
T ss_dssp             HHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTT--S-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHH
T ss_pred             HHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhccc--CCeEEEehhhhhcchhhhhhhccccccccccccccCCceee
Confidence            3445556778999999999999999999988654322  3456777777764    5789986431   23456676654


Q ss_pred             HHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        668 IFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       668 i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                      +             ..--++||  +.+++..-+.|-.+|++++...+.+.+  ..+.++|+|+-++
T Consensus        92 A-------------~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~RiI~st~  142 (168)
T PF00158_consen   92 A-------------NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDK--PVPVDVRIIASTS  142 (168)
T ss_dssp             T-------------TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSS--EEE--EEEEEEES
T ss_pred             c-------------cceEEeecchhhhHHHHHHHHHHHHhhchhccccccc--cccccceEEeecC
Confidence            2             33578899  668889999999999988777776555  4455899999876

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.26  E-value=0.0087  Score=73.55  Aligned_cols=114  Identities=24%  Similarity=0.314  Sum_probs=69.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc----cccccccccccCCCCCcc-cChHHHHHHHhcCCCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA----VSVIELYGVLNPETRDWY-DGLLSNIFRAVNKPLDPG  679 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka----~t~~eLyG~~d~~t~eW~-DGvls~i~R~~~~~~~~~  679 (741)
                      .++++||||+|||++.+.|++.+-..  ......++-..    .+...|+|.- |.--... .|.++..+|+        
T Consensus       541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~~~l~g~~-~gyvg~~~~~~l~~~~~~--------  609 (821)
T CHL00095        541 SFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTVSKLIGSP-PGYVGYNEGGQLTEAVRK--------  609 (821)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccHHHhcCCC-CcccCcCccchHHHHHHh--------
Confidence            57899999999999999999987321  22233333222    2334455542 1001122 3567777773        


Q ss_pred             CCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620        680 SKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI  733 (741)
Q Consensus       680 ~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L  733 (741)
                       ....-|+||  .-++|.....|-.+||+. .++-+.|..+... ++-+|+ |+|+
T Consensus       610 -~p~~VvllDeieka~~~v~~~Llq~le~g-~~~d~~g~~v~~~-~~i~I~-Tsn~  661 (821)
T CHL00095        610 -KPYTVVLFDEIEKAHPDIFNLLLQILDDG-RLTDSKGRTIDFK-NTLIIM-TSNL  661 (821)
T ss_pred             -CCCeEEEECChhhCCHHHHHHHHHHhccC-ceecCCCcEEecC-ceEEEE-eCCc
Confidence             234789999  346777777777777665 5667788888775 344444 4443

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.17  E-value=0.012  Score=72.70  Aligned_cols=115  Identities=23%  Similarity=0.291  Sum_probs=72.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC----ccccccccccccCCCCCc-ccChHHHHHHHhcCCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK----AVSVIELYGVLNPETRDW-YDGLLSNIFRAVNKPLDP  678 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk----a~t~~eLyG~~d~~t~eW-~DGvls~i~R~~~~~~~~  678 (741)
                      +.++++||||+|||++.+.|++.+..-+.+.  .++|-.    ..+...|+|.- |.-... ..|.++..+|+       
T Consensus       596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~--i~~d~s~~~~~~~~~~l~g~~-~g~~g~~~~g~l~~~v~~-------  665 (852)
T TIGR03346       596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAM--VRIDMSEYMEKHSVARLIGAP-PGYVGYEEGGQLTEAVRR-------  665 (852)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcE--EEEechhhcccchHHHhcCCC-CCccCcccccHHHHHHHc-------
Confidence            4688999999999999999999874333333  333322    22334566543 111111 24678877773       


Q ss_pred             CCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620        679 GSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI  733 (741)
Q Consensus       679 ~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L  733 (741)
                        ....-|+||  +.++|.....|-.+||+. .++-..|..+.+.+ + +|+=|+|+
T Consensus       666 --~p~~vlllDeieka~~~v~~~Ll~~l~~g-~l~d~~g~~vd~rn-~-iiI~TSn~  717 (852)
T TIGR03346       666 --KPYSVVLFDEVEKAHPDVFNVLLQVLDDG-RLTDGQGRTVDFRN-T-VIIMTSNL  717 (852)
T ss_pred             --CCCcEEEEeccccCCHHHHHHHHHHHhcC-ceecCCCeEEecCC-c-EEEEeCCc
Confidence              134689999  667888878888888766 45666777777654 3 44445555

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.17  E-value=0.0017  Score=60.08  Aligned_cols=33  Identities=21%  Similarity=0.423  Sum_probs=27.0

Q ss_pred             HHHHhhc--cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        596 MYETMLT--RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       596 L~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +...+..  .+.++|+||||+|||++.+.++..+.
T Consensus        10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          10 LREALELPPPKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            3444444  67899999999999999999998875

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=97.10  E-value=0.0012  Score=72.38  Aligned_cols=117  Identities=16%  Similarity=0.232  Sum_probs=81.5

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC-CccccccccccccCCC-------CCcccCh
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP-KAVSVIELYGVLNPET-------RDWYDGL  664 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp-ka~t~~eLyG~~d~~t-------~eW~DGv  664 (741)
                      +......+.....++|.||||+|||++.+.++++++   .+  ..+++. .-++..+++|.++...       ..|.+|.
T Consensus        33 ~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~---~~--~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gp  107 (329)
T COG0714          33 IELALLALLAGGHVLLEGPPGVGKTLLARALARALG---LP--FVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGP  107 (329)
T ss_pred             HHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhC---CC--eEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCC
Confidence            444566777888999999999999999999999986   23  333332 3455688888875442       4688887


Q ss_pred             HHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEE
Q psy17620        665 LSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLF  728 (741)
Q Consensus       665 ls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliF  728 (741)
                      +....+             ..+++|  ...+|..--.|.++|++.+.---..++ +.+++.+.++.
T Consensus       108 l~~~~~-------------~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~-~~~~~~f~via  159 (329)
T COG0714         108 LFAAVR-------------VILLLDEINRAPPEVQNALLEALEERQVTVPGLTT-IRLPPPFIVIA  159 (329)
T ss_pred             cccccc-------------eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCC-cCCCCCCEEEE
Confidence            654322             588888  667788888888888886444333443 77777665554

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=97.08  E-value=0.002  Score=67.27  Aligned_cols=109  Identities=19%  Similarity=0.380  Sum_probs=68.8

Q ss_pred             HHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhc
Q psy17620        594 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVN  673 (741)
Q Consensus       594 ~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~  673 (741)
                      ..+.+++..+.|..++||+|+|||..+|.|++++++   .  +++.|...               .-....++++++-+.
T Consensus        23 ~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~---~--~~vfnc~~---------------~~~~~~l~ril~G~~   82 (231)
T PF12774_consen   23 LTLTQALSLNLGGALSGPAGTGKTETIKDLARALGR---F--VVVFNCSE---------------QMDYQSLSRILKGLA   82 (231)
T ss_dssp             HHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT-------EEEEETTS---------------SS-HHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCC---e--EEEecccc---------------cccHHHHHHHHHHHh
Confidence            346677788899999999999999999999999753   3  34443221               122335778888665


Q ss_pred             CCCCCCCCCCeEEEEcC--CCChhhh----hhcccc---c-cCCceeeccCCCeeecCCCceEEEEe
Q psy17620        674 KPLDPGSKERKYILFDG--DVDALWI----ENMNSV---M-DDNKILTLANGERIRLLAHCQLLFEI  730 (741)
Q Consensus       674 ~~~~~~~~~~~WIVfDG--~vd~~wi----E~LNsv---L-Ddnk~L~L~nGeri~l~~~~rliFE~  730 (741)
                      .       ..-|.+||.  .++.+.+    +.+.++   + ...+.+++ .|+.|.+.+++.++.-+
T Consensus        83 ~-------~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT~  141 (231)
T PF12774_consen   83 Q-------SGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFITM  141 (231)
T ss_dssp             H-------HT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEEE
T ss_pred             h-------cCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEee
Confidence            4       458999993  3554322    222222   2 34556666 68999999998877644

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=97.04  E-value=0.0081  Score=65.82  Aligned_cols=109  Identities=26%  Similarity=0.226  Sum_probs=82.0

Q ss_pred             cceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecce-EEecCCceEEEeccC-CCCCCCCchHHHhhcc-eee
Q psy17620        423 AWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHD-IIMNNKVGIFITMNP-GYAGRTELPESVKALF-RPV  499 (741)
Q Consensus       423 aW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~-i~l~~~~~iFiTmNp-gy~gr~eLP~nLk~lF-Rpv  499 (741)
                      .-+.+||+||.++++.+++       ..++.  ...++..|.. +.+++.+-+++|.|| .|.|..+||+.++..| -.+
T Consensus       114 ~ill~DEInra~p~~q~aL-------l~~l~--e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~  184 (329)
T COG0714         114 VILLLDEINRAPPEVQNAL-------LEALE--ERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRI  184 (329)
T ss_pred             eEEEEeccccCCHHHHHHH-------HHHHh--CcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEE
Confidence            5789999999999999987       34443  2367777777 999999999999999 6778999999999999 888


Q ss_pred             eccCCCHHH-HHHHHHhhcCccc--hHHHHHHHHHHHHHHHHHh
Q psy17620        500 VCIVPDFEL-ICQIMLFSEGFLE--AKVLAKKMAVLYKLSKEQL  540 (741)
Q Consensus       500 am~~PD~~~-I~ei~L~s~GF~~--a~~La~Kl~~l~~l~~e~l  540 (741)
                      .+.-|+... ...++....|...  .....+++++.....+.+.
T Consensus       185 ~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  228 (329)
T COG0714         185 YVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQK  228 (329)
T ss_pred             ecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHh
Confidence            888885444 4444444444333  4666777777766665443

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.02  E-value=0.0028  Score=64.46  Aligned_cols=88  Identities=18%  Similarity=0.159  Sum_probs=46.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCe
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK  684 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~  684 (741)
                      -++++||+||||||+++.|...+........+..=+|.........+.+....-.+....+...++.+-..      .+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~------~pd   76 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQ------DPD   76 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcC------CcC
Confidence            47899999999999999988876532111111122232221111111111000112223456666654321      457


Q ss_pred             EEEEcCCCChhhhh
Q psy17620        685 YILFDGDVDALWIE  698 (741)
Q Consensus       685 WIVfDG~vd~~wiE  698 (741)
                      +|++|-+-|++-++
T Consensus        77 ~ii~gEird~e~~~   90 (198)
T cd01131          77 VILVGEMRDLETIR   90 (198)
T ss_pred             EEEEcCCCCHHHHH
Confidence            99999887875443

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.00  E-value=0.0007  Score=62.75  Aligned_cols=69  Identities=17%  Similarity=0.336  Sum_probs=43.1

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeE
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKY  685 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~W  685 (741)
                      |+|+||||+|||++++.+++.++     ..++.++...+. .+..|..        ...+..+++++...     ..+.-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~-~~~~~~~--------~~~i~~~~~~~~~~-----~~~~v   61 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSELI-SSYAGDS--------EQKIRDFFKKAKKS-----AKPCV   61 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHHH-TSSTTHH--------HHHHHHHHHHHHHT-----STSEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc-----cccccccccccc-ccccccc--------cccccccccccccc-----cccee
Confidence            68999999999999999999974     455666655544 2222221        11344555554322     13589


Q ss_pred             EEEcCCCCh
Q psy17620        686 ILFDGDVDA  694 (741)
Q Consensus       686 IVfDG~vd~  694 (741)
                      |++| ++|.
T Consensus        62 l~iD-e~d~   69 (132)
T PF00004_consen   62 LFID-EIDK   69 (132)
T ss_dssp             EEEE-TGGG
T ss_pred             eeec-cchh
Confidence            9999 3443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK08118 topology modulation protein; Reviewed

Probab=96.93  E-value=0.0015  Score=64.62  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|+|||||||||+.+.|++.++
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~   26 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLN   26 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998863

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=96.86  E-value=0.009  Score=61.83  Aligned_cols=140  Identities=21%  Similarity=0.312  Sum_probs=78.8

Q ss_pred             HHHHHHHHhccCCCcchhh-HH-H---HHHHhhcc----ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620        574 VVLMRALRDMNLPKFVSED-VV-Q---MYETMLTR----HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV  644 (741)
Q Consensus       574 ~~l~ral~~~~lPkl~~~D-v~-q---L~e~l~~r----~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~  644 (741)
                      .-+-..+|--++-.++..+ +. +   +.++...|    ..++++||||+||||+.+++++.++     ..++..+-.++
T Consensus        12 ~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~-----~~~~~~sg~~i   86 (233)
T PF05496_consen   12 APLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG-----VNFKITSGPAI   86 (233)
T ss_dssp             S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-------EEEEECCC-
T ss_pred             hhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC-----CCeEeccchhh
Confidence            3344555544455555544 21 1   33444333    3799999999999999999999874     23333332121


Q ss_pred             ccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCce-eeccCC---Cee
Q psy17620        645 SVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKI-LTLANG---ERI  718 (741)
Q Consensus       645 t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~-L~L~nG---eri  718 (741)
                      .               +-|=+..++..+.        .+..+..|  --+...--|.|-+.|+|.++ +.+.-|   ..+
T Consensus        87 ~---------------k~~dl~~il~~l~--------~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~  143 (233)
T PF05496_consen   87 E---------------KAGDLAAILTNLK--------EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSI  143 (233)
T ss_dssp             ----------------SCHHHHHHHHT----------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEE
T ss_pred             h---------------hHHHHHHHHHhcC--------CCcEEEEechhhccHHHHHHHHHHhccCeEEEEecccccccee
Confidence            1               0122445554331        34688888  44678888999999998876 555544   344


Q ss_pred             ecC-CCceEEEEeCCCCCCCCCCC
Q psy17620        719 RLL-AHCQLLFEIHPIQSDSHPRR  741 (741)
Q Consensus       719 ~l~-~~~rliFE~~~L~~aSPAt~  741 (741)
                      .++ |++.+|=-|+.....|+.-|
T Consensus       144 ~~~l~~FTligATTr~g~ls~pLr  167 (233)
T PF05496_consen  144 RINLPPFTLIGATTRAGLLSSPLR  167 (233)
T ss_dssp             EEE----EEEEEESSGCCTSHCCC
T ss_pred             eccCCCceEeeeeccccccchhHH
Confidence            443 45899999988887776543

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.84  E-value=0.00092  Score=68.23  Aligned_cols=112  Identities=20%  Similarity=0.285  Sum_probs=72.9

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhccCCC----------------------CeEEEEeCCCccccccccccccCCCC
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGY----------------------PARTYTLNPKAVSVIELYGVLNPETR  658 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~----------------------~~~~~~inpka~t~~eLyG~~d~~t~  658 (741)
                      .-.|+++++||||+|||++.+.+...+-.+..                      ...-++--+.+.|...|.|.-    .
T Consensus        20 aG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg----~   95 (206)
T PF01078_consen   20 AGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGG----R   95 (206)
T ss_dssp             HCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEG----G
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCC----c
Confidence            35899999999999999999999987644310                      011233445566667777763    2


Q ss_pred             CcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEE
Q psy17620        659 DWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFE  729 (741)
Q Consensus       659 eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE  729 (741)
                      ..+.|.++.+             .+-.+.+|  ...++..+|.|-..|++.++-.-..|..+..|-++-++--
T Consensus        96 ~~~PGeislA-------------h~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a  155 (206)
T PF01078_consen   96 PPRPGEISLA-------------HRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAA  155 (206)
T ss_dssp             GEEE-CGGGG-------------TTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEE
T ss_pred             CCCcCHHHHh-------------cCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEE
Confidence            4566766542             45689999  7789999999999999987766668888998888766654

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=96.82  E-value=0.015  Score=62.31  Aligned_cols=132  Identities=21%  Similarity=0.255  Sum_probs=78.0

Q ss_pred             eeecccccCChhhHHHHHHH-HHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHHhhcceeeeccC
Q psy17620        425 GCFDEFNRIDVSVLSVISTQ-LLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIV  503 (741)
Q Consensus       425 ~cfDEfnrl~~~vLSvva~q-i~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRpvam~~  503 (741)
                      ..+|++|.-..+-=.  +|+ ++-+++-+.. ..-+.....+..--.++.+..+|||+ +||..+|.-|...|+-+++..
T Consensus       104 ~fiDDlN~p~~d~yg--tq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~-~Gr~~is~R~~r~f~i~~~~~  179 (272)
T PF12775_consen  104 LFIDDLNMPQPDKYG--TQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPT-GGRNPISPRFLRHFNILNIPY  179 (272)
T ss_dssp             EEEETTT-S---TTS----HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESST-TT--SHHHHHHTTEEEEE---
T ss_pred             EEecccCCCCCCCCC--CcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCC-CCCCCCChHHhhheEEEEecC
Confidence            446999987766422  222 3334444432 23222222233333467788999995 489999999999999999999


Q ss_pred             CCHH---HH----HHHHHhhcCccc-----hHHHHHHHHHHHHHHHHHhhc---CCccccchhhHHHHHHHh
Q psy17620        504 PDFE---LI----CQIMLFSEGFLE-----AKVLAKKMAVLYKLSKEQLSK---QCHYDFGMRALKSVLVMA  560 (741)
Q Consensus       504 PD~~---~I----~ei~L~s~GF~~-----a~~La~Kl~~l~~l~~e~ls~---q~hydfgLRalksVL~~a  560 (741)
                      |+-+   .|    .+..|...+|..     +..+....+.+|+.+++.+-+   ..||-|.||.+-.|+.-.
T Consensus       180 p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGi  251 (272)
T PF12775_consen  180 PSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGI  251 (272)
T ss_dssp             -TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHHH
Confidence            9764   33    333344456743     566777778889988887743   479999999998887654

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.80  E-value=0.046  Score=66.48  Aligned_cols=68  Identities=22%  Similarity=0.386  Sum_probs=42.3

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      ..+|++|+||||||||++.+.++..++   .  ....+++     .++++.+--.    ....+..+++.+..      .
T Consensus       486 ~~~giLL~GppGtGKT~lakalA~e~~---~--~fi~v~~-----~~l~~~~vGe----se~~i~~~f~~A~~------~  545 (733)
T TIGR01243       486 PPKGVLLFGPPGTGKTLLAKAVATESG---A--NFIAVRG-----PEILSKWVGE----SEKAIREIFRKARQ------A  545 (733)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcC---C--CEEEEeh-----HHHhhcccCc----HHHHHHHHHHHHHh------c
Confidence            356899999999999999999998763   2  2333332     2343332111    12245666665533      2


Q ss_pred             CCeEEEEc
Q psy17620        682 ERKYILFD  689 (741)
Q Consensus       682 ~~~WIVfD  689 (741)
                      .+..|+||
T Consensus       546 ~p~iifiD  553 (733)
T TIGR01243       546 APAIIFFD  553 (733)
T ss_pred             CCEEEEEE
Confidence            45789999

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>CHL00195 ycf46 Ycf46; Provisional

Probab=96.79  E-value=0.14  Score=59.16  Aligned_cols=112  Identities=23%  Similarity=0.293  Sum_probs=65.1

Q ss_pred             ceeccchhHHHHHHHHHHHcccCCC-------------CC-----CCCHHHHHHHHHHhhhc-CcceeecccccC--Chh
Q psy17620        378 LVITPLTDRIYLTITQALSMRLGAA-------------PA-----GMDFLAFGKILSGLSQC-GAWGCFDEFNRI--DVS  436 (741)
Q Consensus       378 LViTPLTdRc~~tl~~Al~~~~GGa-------------p~-----~~d~~~~~ri~~Glaq~-GaW~cfDEfnrl--~~~  436 (741)
                      .|.|+.-+|+-..+.++-....+..             |.     .-++...-+.+....+. .+-..|.+|++.  +..
T Consensus        19 ~i~t~ee~r~~~~~~~~~~~~~~~~~~~W~~~~G~~~~~~~~~~~~~~p~~al~~i~~~~~~~~~~~vl~d~h~~~~~~~   98 (489)
T CHL00195         19 YINTIEEDRLEYIIRKSIKLNLNRSIYSWDFVDGYTNNPNDNGFAKRNPLQALEFIEKLTPETPALFLLKDFNRFLNDIS   98 (489)
T ss_pred             EEecCCHHHHHHHHHHHHHhcCCCceEEEeccCCCccCCCccCcccccHHHHHHHHHhcCCCCCcEEEEecchhhhcchH
Confidence            4567788888877766654221111             11     12444444566666542 357778888887  333


Q ss_pred             hHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHHhhcceeeeccCCCHHHHHHHH
Q psy17620        437 VLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIM  513 (741)
Q Consensus       437 vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRpvam~~PD~~~I~ei~  513 (741)
                          +...++.+....+..              +.+-|+++  |    .-++|+.|..++..+.+.-||.+-|.+++
T Consensus        99 ----~~r~l~~l~~~~~~~--------------~~~~i~~~--~----~~~~p~el~~~~~~~~~~lP~~~ei~~~l  151 (489)
T CHL00195         99 ----ISRKLRNLSRILKTQ--------------PKTIIIIA--S----ELNIPKELKDLITVLEFPLPTESEIKKEL  151 (489)
T ss_pred             ----HHHHHHHHHHHHHhC--------------CCEEEEEc--C----CCCCCHHHHhceeEEeecCcCHHHHHHHH
Confidence                334444443333332              22223333  2    35899999999999999999988776553

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=96.69  E-value=0.0021  Score=70.60  Aligned_cols=113  Identities=23%  Similarity=0.333  Sum_probs=75.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccC----CCCeE-----------------------EEEeCCCccccccccccccCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVL----GYPAR-----------------------TYTLNPKAVSVIELYGVLNPE  656 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~-----------------------~~~inpka~t~~eLyG~~d~~  656 (741)
                      |++++.|+||+|||++.+.+++.+..+    +.++.                       -.+-=|-..|.+.|+|.+|-+
T Consensus        30 ~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~  109 (334)
T PRK13407         30 GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIE  109 (334)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhh
Confidence            789999999999999999999998432    11000                       001134556778899987754


Q ss_pred             ----CC--CcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEE
Q psy17620        657 ----TR--DWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLF  728 (741)
Q Consensus       657 ----t~--eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliF  728 (741)
                          ++  .++.|.+..             .++--+++|  ..+++.-.+.|-.+|++.....-..|.....|..+.++.
T Consensus       110 ~~l~~g~~~~~~G~l~~-------------A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviA  176 (334)
T PRK13407        110 RALTRGEKAFEPGLLAR-------------ANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVG  176 (334)
T ss_pred             hhhhcCCeeecCCceEE-------------cCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEe
Confidence                22  356665421             123468888  457888888888888887765556777777777665554


Q ss_pred             E
Q psy17620        729 E  729 (741)
Q Consensus       729 E  729 (741)
                      -
T Consensus       177 t  177 (334)
T PRK13407        177 S  177 (334)
T ss_pred             c
Confidence            3

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=96.55  E-value=0.01  Score=72.97  Aligned_cols=114  Identities=23%  Similarity=0.246  Sum_probs=76.4

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC----CccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP----KAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp----ka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      ++++||||+|||.+.+.|++.+-.-  .-.+.++|-    ...+...|.|.--.--+.=..|.++..+|+         .
T Consensus       599 ~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~---------~  667 (852)
T TIGR03345       599 FLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR---------K  667 (852)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh---------C
Confidence            7999999999999999999987321  123334432    223445565542000011146899988885         2


Q ss_pred             CCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620        682 ERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI  733 (741)
Q Consensus       682 ~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L  733 (741)
                      ...-|+||  ..++|...+.|-.++|+. .|+-+.|..+.+.+ .-+|+ |+|+
T Consensus       668 p~svvllDEieka~~~v~~~Llq~ld~g-~l~d~~Gr~vd~~n-~iiI~-TSNl  718 (852)
T TIGR03345       668 PYSVVLLDEVEKAHPDVLELFYQVFDKG-VMEDGEGREIDFKN-TVILL-TSNA  718 (852)
T ss_pred             CCcEEEEechhhcCHHHHHHHHHHhhcc-eeecCCCcEEeccc-cEEEE-eCCC
Confidence            34699999  678888888888999886 56888999888875 34444 4454

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.54  E-value=0.01  Score=64.58  Aligned_cols=37  Identities=22%  Similarity=0.408  Sum_probs=29.3

Q ss_pred             HHHHHHHhhccc--eEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        593 VVQMYETMLTRH--STMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       593 v~qL~e~l~~r~--gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +.+|.+.+....  .++++||||+|||++.+.+++.+..
T Consensus        24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~   62 (337)
T PRK12402         24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG   62 (337)
T ss_pred             HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            445556555554  7999999999999999999998753

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.52  E-value=0.0062  Score=68.69  Aligned_cols=114  Identities=13%  Similarity=0.325  Sum_probs=62.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE  682 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~  682 (741)
                      ...++|+||||+|||++.+.|++.++   .+  ...++...++...+.|. |      ..++++.+++...-...  ...
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~---~p--f~~~da~~L~~~gyvG~-d------~e~~L~~~~~~~~~~l~--~a~  181 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILN---VP--FAIADATTLTEAGYVGE-D------VENILLKLLQAADYDVE--KAQ  181 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcC---CC--eEEechhhccccccccc-c------HHHHHHHHHHhCcccHH--hcc
Confidence            46899999999999999999998763   23  33344333333333333 1      24667777764321111  123


Q ss_pred             CeEEEEcCC--CCh--------------hhhhhccccccCCceeec-cCC-CeeecCCCceEEEEeCCC
Q psy17620        683 RKYILFDGD--VDA--------------LWIENMNSVMDDNKILTL-ANG-ERIRLLAHCQLLFEIHPI  733 (741)
Q Consensus       683 ~~WIVfDG~--vd~--------------~wiE~LNsvLDdnk~L~L-~nG-eri~l~~~~rliFE~~~L  733 (741)
                      +-.|+||.-  +.+              ..-..|..+|| .....+ +.| .+.+.  .-.+++-|+|+
T Consensus       182 ~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~gr~~~~--~~~i~i~TsNi  247 (413)
T TIGR00382       182 KGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGRKHPY--QEFIQIDTSNI  247 (413)
T ss_pred             cceEEecccchhchhhccccccccccchhHHHHHHHHhh-ccceecccCCCccccC--CCeEEEEcCCc
Confidence            457888843  222              24445667774 444333 233 33322  33455556665

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.48  E-value=0.0027  Score=57.99  Aligned_cols=41  Identities=24%  Similarity=0.428  Sum_probs=31.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS  645 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t  645 (741)
                      .+.++|+||||||||++.+.++..+...+  ..+..+++....
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~   42 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDIL   42 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEcc
Confidence            46799999999999999999998876543  235556555544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=96.46  E-value=0.0023  Score=67.22  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCC
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGY  632 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~  632 (741)
                      |+++|+|||||||+.+.|++.+...+.
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~   28 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNI   28 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            789999999999999999998865443

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.42  E-value=0.0026  Score=58.56  Aligned_cols=24  Identities=33%  Similarity=0.569  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|+|+|||||||||+.+.|++.++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Confidence            378999999999999999999873

...

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=96.41  E-value=0.0053  Score=67.57  Aligned_cols=112  Identities=22%  Similarity=0.290  Sum_probs=70.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccC----CCCeEE-------------------------------EEeCCCccccc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVL----GYPART-------------------------------YTLNPKAVSVI  647 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~~-------------------------------~~inpka~t~~  647 (741)
                      ..+|+|.|++|+||||+.+++++.+...    +.+..+                               .. =|-.++.+
T Consensus        25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-lP~~~t~d  103 (337)
T TIGR02030        25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVD-LPLGATED  103 (337)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCC-CCCCCccc
Confidence            5679999999999999999999887321    111110                               11 23445567


Q ss_pred             cccccccCC----CC--CcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeee
Q psy17620        648 ELYGVLNPE----TR--DWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIR  719 (741)
Q Consensus       648 eLyG~~d~~----t~--eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~  719 (741)
                      .|+|..|..    ++  .++.|++..             .++-.+++|  ..+++.-...|-.+|+++..-.-..|....
T Consensus       104 ~l~G~~d~~~~l~~g~~~~~~GlL~~-------------A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~  170 (337)
T TIGR02030       104 RVCGTLDIERALTEGVKAFEPGLLAR-------------ANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIR  170 (337)
T ss_pred             ceecchhHhhHhhcCCEEeecCccee-------------ccCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEE
Confidence            889988732    22  345565431             234688999  557787777777788776443344566666


Q ss_pred             cCCCceEEE
Q psy17620        720 LLAHCQLLF  728 (741)
Q Consensus       720 l~~~~rliF  728 (741)
                      .+..+.++-
T Consensus       171 ~~~r~ivia  179 (337)
T TIGR02030       171 HPARFVLVG  179 (337)
T ss_pred             cCCCEEEEe
Confidence            665443333

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=96.34  E-value=0.0032  Score=63.19  Aligned_cols=46  Identities=28%  Similarity=0.317  Sum_probs=33.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELY  650 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLy  650 (741)
                      .-|.+.|++||||||..+.|++.++..|..+. ..-.|..-...+++
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~-~~~~~~~~~~~~~i   49 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVL-FTREPGGTPIGEKI   49 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE-EEeCCCCChHHHHH
Confidence            34889999999999999999999987666553 33445443334433

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK07261 topology modulation protein; Provisional

Probab=96.27  E-value=0.0075  Score=59.87  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             EEEEecCCCChhHHHHHHHHHh
Q psy17620        606 TMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      |+|+|+|||||||+.+.|++.+
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998775

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.22  E-value=0.014  Score=62.84  Aligned_cols=78  Identities=19%  Similarity=0.262  Sum_probs=49.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCe
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK  684 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~  684 (741)
                      .++++||||+|||++.+.++..+..   +  ...+          +|....     .-|.+...++...        ...
T Consensus        32 ~~ll~Gp~G~GKT~la~~ia~~~~~---~--~~~~----------~~~~~~-----~~~~l~~~l~~~~--------~~~   83 (305)
T TIGR00635        32 HLLLYGPPGLGKTTLAHIIANEMGV---N--LKIT----------SGPALE-----KPGDLAAILTNLE--------EGD   83 (305)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC---C--EEEe----------ccchhc-----CchhHHHHHHhcc--------cCC
Confidence            5899999999999999999887631   2  2222          222111     1123444454331        346


Q ss_pred             EEEEc--CCCChhhhhhccccccCCcee
Q psy17620        685 YILFD--GDVDALWIENMNSVMDDNKIL  710 (741)
Q Consensus       685 WIVfD--G~vd~~wiE~LNsvLDdnk~L  710 (741)
                      .+++|  -.+++...|.|.+++++.+..
T Consensus        84 vl~iDEi~~l~~~~~e~l~~~~~~~~~~  111 (305)
T TIGR00635        84 VLFIDEIHRLSPAVEELLYPAMEDFRLD  111 (305)
T ss_pred             EEEEehHhhhCHHHHHHhhHHHhhhhee
Confidence            89999  335666778888888876644

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=96.21  E-value=0.0099  Score=67.23  Aligned_cols=116  Identities=13%  Similarity=0.289  Sum_probs=62.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      ....++++||||||||++.+.|++.+.     .....++...++...+.|. |      .+.++..+++......  ...
T Consensus       107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~-----~pf~~id~~~l~~~gyvG~-d------~e~~l~~l~~~~~~~~--~~a  172 (412)
T PRK05342        107 QKSNILLIGPTGSGKTLLAQTLARILD-----VPFAIADATTLTEAGYVGE-D------VENILLKLLQAADYDV--EKA  172 (412)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHhC-----CCceecchhhcccCCcccc-h------HHHHHHHHHHhccccH--HHc
Confidence            356899999999999999999998763     2344455544443333333 1      1234444443321111  122


Q ss_pred             CCeEEEEcCC--CCh--------------hhhhhccccccCCceeecc-CCCeeecCCCceEEEEeCCC
Q psy17620        682 ERKYILFDGD--VDA--------------LWIENMNSVMDDNKILTLA-NGERIRLLAHCQLLFEIHPI  733 (741)
Q Consensus       682 ~~~WIVfDG~--vd~--------------~wiE~LNsvLDdnk~L~L~-nGeri~l~~~~rliFE~~~L  733 (741)
                      .+..|++|.-  +++              ..-..|-.+|| ....++| +|.+.. +..-.+++-|+|+
T Consensus       173 ~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Le-g~~~~v~~~gg~~~-~~~~~~~i~t~ni  239 (412)
T PRK05342        173 QRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILE-GTVASVPPQGGRKH-PQQEFIQVDTTNI  239 (412)
T ss_pred             CCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHh-cCeEEeCCCCCcCc-CCCCeEEeccCCc
Confidence            4578888821  211              13356677786 5566654 333222 2233344444444

>KOG0736|consensus

Probab=96.17  E-value=0.021  Score=67.49  Aligned_cols=28  Identities=25%  Similarity=0.579  Sum_probs=24.0

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +..|.||+|+||||+|||-+.|+.|--.
T Consensus       702 lrkRSGILLYGPPGTGKTLlAKAVATEc  729 (953)
T KOG0736|consen  702 LRKRSGILLYGPPGTGKTLLAKAVATEC  729 (953)
T ss_pred             ccccceeEEECCCCCchHHHHHHHHhhc
Confidence            4558999999999999999999887654

>TIGR00763 lon ATP-dependent protease La

Probab=96.13  E-value=0.06  Score=65.87  Aligned_cols=119  Identities=17%  Similarity=0.220  Sum_probs=62.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc-ccccccccccCCCCCcc---cChHHHHHHHhcCCCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-SVIELYGVLNPETRDWY---DGLLSNIFRAVNKPLDPG  679 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~-t~~eLyG~~d~~t~eW~---DGvls~i~R~~~~~~~~~  679 (741)
                      ..++++||||+|||++.+.+++++..     ....++.... +..++.|..    +.|.   .|-+...++++..     
T Consensus       348 ~~lll~GppG~GKT~lAk~iA~~l~~-----~~~~i~~~~~~~~~~i~g~~----~~~~g~~~g~i~~~l~~~~~-----  413 (775)
T TIGR00763       348 PILCLVGPPGVGKTSLGKSIAKALNR-----KFVRFSLGGVRDEAEIRGHR----RTYVGAMPGRIIQGLKKAKT-----  413 (775)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcC-----CeEEEeCCCcccHHHHcCCC----CceeCCCCchHHHHHHHhCc-----
Confidence            36899999999999999999999742     2333433222 234455532    1222   4555566665422     


Q ss_pred             CCCCeEEEEcC-----C-CChhhhhhccccccC--Cceeecc-CCCeeecCCCceEEEEeCCCCCCCCC
Q psy17620        680 SKERKYILFDG-----D-VDALWIENMNSVMDD--NKILTLA-NGERIRLLAHCQLLFEIHPIQSDSHP  739 (741)
Q Consensus       680 ~~~~~WIVfDG-----~-vd~~wiE~LNsvLDd--nk~L~L~-nGeri~l~~~~rliFE~~~L~~aSPA  739 (741)
                        .+..|+||-     + ....-...|-.+||+  |+.+.=. -|..+.++ ++-+|+-+..+....||
T Consensus       414 --~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s-~v~~I~TtN~~~~i~~~  479 (775)
T TIGR00763       414 --KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLS-KVIFIATANSIDTIPRP  479 (775)
T ss_pred             --CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccC-CEEEEEecCCchhCCHH
Confidence              223899992     1 111113445566664  3222111 12223322 44455555555555554

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=96.11  E-value=0.0072  Score=71.45  Aligned_cols=110  Identities=19%  Similarity=0.176  Sum_probs=79.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCC----CC--CcccChHHHHHHHhcCCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPE----TR--DWYDGLLSNIFRAVNKPLDP  678 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~----t~--eW~DGvls~i~R~~~~~~~~  678 (741)
                      +|+|.|++|+|||++.+.+++.+..   ...+..+.+ ..+.+.|+|.+|-.    ++  .|+.|++..           
T Consensus        18 ~vLl~G~~GtgKs~lar~l~~~~~~---~~pfv~i~~-~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~-----------   82 (589)
T TIGR02031        18 GVAIRARAGTGKTALARALAEILPP---IMPFVELPL-GVTEDRLIGGIDVEESLAGGQRVTQPGLLDE-----------   82 (589)
T ss_pred             eEEEEcCCCcHHHHHHHHHHHhCCc---CCCeEecCc-ccchhhcccchhhhhhhhcCcccCCCCCeee-----------
Confidence            7999999999999999999988643   122444554 57789999998632    12  456665532           


Q ss_pred             CCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCC
Q psy17620        679 GSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHP  732 (741)
Q Consensus       679 ~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~  732 (741)
                        .++--+++|  ..+++.-...|-.+|++...-.-..|.....|..+++|- +++
T Consensus        83 --A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIA-t~n  135 (589)
T TIGR02031        83 --APRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIA-TYD  135 (589)
T ss_pred             --CCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEE-ecC
Confidence              133477888  557888888888899877654445788888888898885 444

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.09  E-value=0.0044  Score=58.60  Aligned_cols=23  Identities=35%  Similarity=0.625  Sum_probs=21.0

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+++|||||||||+.+.|++.+.
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Confidence            78999999999999999998763

...

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=96.06  E-value=0.024  Score=66.25  Aligned_cols=121  Identities=17%  Similarity=0.235  Sum_probs=81.6

Q ss_pred             HHhhccceEEEEecCCCChhHHHHHHHHHhc------cCCCCeEEEEeCCCcccc----ccccccccCC-C---CCcccC
Q psy17620        598 ETMLTRHSTMIVGPTGGGKSVVINALVKTST------VLGYPARTYTLNPKAVSV----IELYGVLNPE-T---RDWYDG  663 (741)
Q Consensus       598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~------~~~~~~~~~~inpka~t~----~eLyG~~d~~-t---~eW~DG  663 (741)
                      ..-....+|+|.|++||||+.+.+.+...+.      .....-....+|..+++.    .+|||+-+.+ |   +.-+.|
T Consensus       237 ~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~G  316 (538)
T PRK15424        237 LYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG  316 (538)
T ss_pred             HHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCC
Confidence            3445688999999999999999999988721      011223456677666653    6789975422 1   123344


Q ss_pred             hHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC-CC
Q psy17620        664 LLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH-PI  733 (741)
Q Consensus       664 vls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~-~L  733 (741)
                      +|..             ..+--++||  |.+++..-..|-.+|++.....+.+..  ..+-++|+|+-++ ||
T Consensus       317 l~e~-------------A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~--~~~~dvRiIaat~~~L  374 (538)
T PRK15424        317 LFEI-------------AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ--PVPVDVRVISATHCDL  374 (538)
T ss_pred             chhc-------------cCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCc--eeccceEEEEecCCCH
Confidence            4421             133469999  778899999999999988777665544  4566899999764 44

>PF05729 NACHT: NACHT domain

Probab=96.04  E-value=0.016  Score=55.64  Aligned_cols=28  Identities=25%  Similarity=0.342  Sum_probs=23.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      +-++|+|+||+|||++.+.++..+...+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~   28 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEE   28 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence            3588999999999999999998876543

>PRK10865 protein disaggregation chaperone; Provisional

Probab=96.03  E-value=0.018  Score=71.00  Aligned_cols=114  Identities=23%  Similarity=0.304  Sum_probs=71.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC----ccccccccccccCCCCCcc-cChHHHHHHHhcCCCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK----AVSVIELYGVLNPETRDWY-DGLLSNIFRAVNKPLDPG  679 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk----a~t~~eLyG~~d~~t~eW~-DGvls~i~R~~~~~~~~~  679 (741)
                      .++++||||+|||++.+.|++.+..-+.+.  ..++..    ..+...|+|.- |...... .|.++..+|+        
T Consensus       600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~--i~id~se~~~~~~~~~LiG~~-pgy~g~~~~g~l~~~v~~--------  668 (857)
T PRK10865        600 SFLFLGPTGVGKTELCKALANFMFDSDDAM--VRIDMSEFMEKHSVSRLVGAP-PGYVGYEEGGYLTEAVRR--------  668 (857)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhcCCCcE--EEEEhHHhhhhhhHHHHhCCC-CcccccchhHHHHHHHHh--------
Confidence            588999999999999999998874322232  333322    23445678753 1111122 3567766663        


Q ss_pred             CCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620        680 SKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI  733 (741)
Q Consensus       680 ~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L  733 (741)
                       ....-++||  +.+++.....|-.+||+++ ++-..|..+.+.+.  +|+=|+|+
T Consensus       669 -~p~~vLllDEieka~~~v~~~Ll~ile~g~-l~d~~gr~vd~rn~--iiI~TSN~  720 (857)
T PRK10865        669 -RPYSVILLDEVEKAHPDVFNILLQVLDDGR-LTDGQGRTVDFRNT--VVIMTSNL  720 (857)
T ss_pred             -CCCCeEEEeehhhCCHHHHHHHHHHHhhCc-eecCCceEEeeccc--EEEEeCCc
Confidence             134689999  5567877777778887764 45566777776543  33335555

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=96.01  E-value=0.014  Score=64.57  Aligned_cols=117  Identities=22%  Similarity=0.237  Sum_probs=67.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCC----CCeE-------------------------------EEEeCCCcccccc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLG----YPAR-------------------------------TYTLNPKAVSVIE  648 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~----~~~~-------------------------------~~~inpka~t~~e  648 (741)
                      .||+|.|++|+|||++.+.+.+.+...+    .+..                               +..+ |-..+.+.
T Consensus        39 ~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-p~~~ted~  117 (350)
T CHL00081         39 GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDL-PLGATEDR  117 (350)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcccccccceeccccceec-CCCCchhh
Confidence            4899999999999999999988765321    1111                               1111 33457788


Q ss_pred             ccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceE
Q psy17620        649 LYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQL  726 (741)
Q Consensus       649 LyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rl  726 (741)
                      |+|.+|.+. .+..|..  .++..--    ...++--+++|  +.+++.-...|-.+|++...-.-..|.....|..+.+
T Consensus       118 l~G~iD~~~-al~~g~~--~~~~GlL----~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiv  190 (350)
T CHL00081        118 VCGTIDIEK-ALTEGVK--AFEPGLL----AKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVL  190 (350)
T ss_pred             ccCcccHHH-HhhcCcc--cccCCee----eecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEE
Confidence            999988753 3444421  1110000    12245688888  5577776666666776543222234555555554444


Q ss_pred             EE
Q psy17620        727 LF  728 (741)
Q Consensus       727 iF  728 (741)
                      +.
T Consensus       191 ia  192 (350)
T CHL00081        191 VG  192 (350)
T ss_pred             Ee
Confidence            43

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=96.00  E-value=0.024  Score=67.70  Aligned_cols=120  Identities=10%  Similarity=0.101  Sum_probs=79.1

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCCCCCcccChHHHHHH
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPETRDWYDGLLSNIFR  670 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~t~eW~DGvls~i~R  670 (741)
                      ++-.......+|+|.|++||||+++.+.+......-+  -....+|..+++.    .+|||+.......-.-|.|.    
T Consensus       340 ~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~--~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~----  413 (638)
T PRK11388        340 FGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAA--GPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFE----  413 (638)
T ss_pred             HHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccC--CCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCcee----
Confidence            3444556788999999999999999999988754322  2355677666653    67999873322222223221    


Q ss_pred             HhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        671 AVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       671 ~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                               ....--+++|  +.+++.--+.|-.+|+++....+.+...  .+-++|+|+-++
T Consensus       414 ---------~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~--~~~~~riI~~t~  465 (638)
T PRK11388        414 ---------LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRL--IPVDVRVIATTT  465 (638)
T ss_pred             ---------ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCce--EEeeEEEEEecc
Confidence                     1123468888  6678888888888998776666644443  344688888654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=96.00  E-value=0.0066  Score=63.68  Aligned_cols=38  Identities=24%  Similarity=0.420  Sum_probs=29.1

Q ss_pred             EEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620        608 IVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS  645 (741)
Q Consensus       608 lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t  645 (741)
                      ++|||||||||..+.+.+-+...|.++.+.-++|.+-.
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~   38 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVEN   38 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcc
Confidence            68999999999999999999988888888889998764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK06526 transposase; Provisional

Probab=95.95  E-value=0.0061  Score=64.52  Aligned_cols=88  Identities=14%  Similarity=0.186  Sum_probs=50.6

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCC
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPG  679 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~  679 (741)
                      +..+++++++||||+|||.+...++......|.++.+       .+..++...+..   .+.+|-+...++++.      
T Consensus        95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f-------~t~~~l~~~l~~---~~~~~~~~~~l~~l~------  158 (254)
T PRK06526         95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF-------ATAAQWVARLAA---AHHAGRLQAELVKLG------  158 (254)
T ss_pred             hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh-------hhHHHHHHHHHH---HHhcCcHHHHHHHhc------
Confidence            3457899999999999999999998776554544322       122222222211   123444445555442      


Q ss_pred             CCCCeEEEEc--C--CCChhhhhhcccccc
Q psy17620        680 SKERKYILFD--G--DVDALWIENMNSVMD  705 (741)
Q Consensus       680 ~~~~~WIVfD--G--~vd~~wiE~LNsvLD  705 (741)
                        ....+|+|  |  +.++.+.+-|..+++
T Consensus       159 --~~dlLIIDD~g~~~~~~~~~~~L~~li~  186 (254)
T PRK06526        159 --RYPLLIVDEVGYIPFEPEAANLFFQLVS  186 (254)
T ss_pred             --cCCEEEEcccccCCCCHHHHHHHHHHHH
Confidence              23577888  3  234555555555554

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=95.95  E-value=0.012  Score=57.97  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=31.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      .++++||||+||||+...++..+...|.++.+...++.-
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~   40 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR   40 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence            468999999999999999999887766666666666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=95.94  E-value=0.03  Score=65.32  Aligned_cols=117  Identities=19%  Similarity=0.304  Sum_probs=80.3

Q ss_pred             HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC----CCCcccChHHHHH
Q psy17620        598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE----TRDWYDGLLSNIF  669 (741)
Q Consensus       598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~----t~eW~DGvls~i~  669 (741)
                      ..-....+|+|.|++||||+.+.+.+.....+-+  -....+|..+++.    .+|||+-+.+    .+.-+.|+|..  
T Consensus       230 ~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~--~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~--  305 (526)
T TIGR02329       230 LYARSDATVLILGESGTGKELVAQAIHQLSGRRD--FPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEA--  305 (526)
T ss_pred             HHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCC--CCEEEeccccCChhHHHHHhcCCcccccccccccccccchhh--
Confidence            4445788999999999999999999987653322  2355677666653    5789975321    11123343321  


Q ss_pred             HHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        670 RAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       670 R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                                 ...--++||  +.+++..-..|-.+|.++....+.+.+  ..+-++|+|+-++
T Consensus       306 -----------A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~--~~~~dvRiIaat~  356 (526)
T TIGR02329       306 -----------AHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTE--PVPVDVRVVAATH  356 (526)
T ss_pred             -----------cCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCc--eeeecceEEeccC
Confidence                       133458999  778888889999999988777775555  4456789998764

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=95.94  E-value=0.02  Score=62.75  Aligned_cols=107  Identities=20%  Similarity=0.285  Sum_probs=62.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKER  683 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~  683 (741)
                      +.++++||||+|||++.+.+++.++.   .  ...++          |....     ..|.+..+++...        ..
T Consensus        52 ~~~ll~GppG~GKT~la~~ia~~l~~---~--~~~~~----------~~~~~-----~~~~l~~~l~~l~--------~~  103 (328)
T PRK00080         52 DHVLLYGPPGLGKTTLANIIANEMGV---N--IRITS----------GPALE-----KPGDLAAILTNLE--------EG  103 (328)
T ss_pred             CcEEEECCCCccHHHHHHHHHHHhCC---C--eEEEe----------ccccc-----ChHHHHHHHHhcc--------cC
Confidence            47899999999999999999998742   2  11111          11100     1234555555432        34


Q ss_pred             eEEEEc--CCCChhhhhhccccccCCceee-ccCCC-----eeecCCCceEEEEeCCCCCCCCC
Q psy17620        684 KYILFD--GDVDALWIENMNSVMDDNKILT-LANGE-----RIRLLAHCQLLFEIHPIQSDSHP  739 (741)
Q Consensus       684 ~WIVfD--G~vd~~wiE~LNsvLDdnk~L~-L~nGe-----ri~l~~~~rliFE~~~L~~aSPA  739 (741)
                      ..+++|  ..+.+..-|.+.+.+++.+... +.+|.     ++.+|+ +.+|.-++.....+|+
T Consensus       104 ~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~-~~li~at~~~~~l~~~  166 (328)
T PRK00080        104 DVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP-FTLIGATTRAGLLTSP  166 (328)
T ss_pred             CEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC-ceEEeecCCcccCCHH
Confidence            688998  3344555667777777765432 33322     223343 6677766665555543

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.02  Score=68.77  Aligned_cols=112  Identities=25%  Similarity=0.314  Sum_probs=79.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC----cccccccccc----ccCCCCCcccChHHHHHHHhcCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK----AVSVIELYGV----LNPETRDWYDGLLSNIFRAVNKPL  676 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk----a~t~~eLyG~----~d~~t~eW~DGvls~i~R~~~~~~  676 (741)
                      +.+++||||.|||.+.+.|+..+-  |-.....++|-.    ..|.+.|.|.    +--+    .-|.|+-.+|+     
T Consensus       523 sFlF~GPTGVGKTELAkaLA~~Lf--g~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGye----eGG~LTEaVRr-----  591 (786)
T COG0542         523 SFLFLGPTGVGKTELAKALAEALF--GDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYE----EGGQLTEAVRR-----  591 (786)
T ss_pred             EEEeeCCCcccHHHHHHHHHHHhc--CCCccceeechHHHHHHHHHHHHhCCCCCCceec----cccchhHhhhc-----
Confidence            456799999999999999999974  222333444322    2344556554    2111    25799999983     


Q ss_pred             CCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCCC
Q psy17620        677 DPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQ  734 (741)
Q Consensus       677 ~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L~  734 (741)
                          +...-|+||  -=++|....-|-.||||+ .||=+.|..+.+.+.  +|+=|+|+.
T Consensus       592 ----~PySViLlDEIEKAHpdV~nilLQVlDdG-rLTD~~Gr~VdFrNt--iIImTSN~G  644 (786)
T COG0542         592 ----KPYSVILLDEIEKAHPDVFNLLLQVLDDG-RLTDGQGRTVDFRNT--IIIMTSNAG  644 (786)
T ss_pred             ----CCCeEEEechhhhcCHHHHHHHHHHhcCC-eeecCCCCEEeccee--EEEEecccc
Confidence                356799999  336788888888999886 678889999998876  666666664

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=95.91  E-value=0.045  Score=60.47  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=25.4

Q ss_pred             HHHHhhcc-ceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        596 MYETMLTR-HSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       596 L~e~l~~r-~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +.+.+..+ --+++.|||||||||+++.+...+..
T Consensus       114 l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~  148 (343)
T TIGR01420       114 LRELAERPRGLILVTGPTGSGKSTTLASMIDYINK  148 (343)
T ss_pred             HHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence            33444333 45679999999999999999887653

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PLN03025 replication factor C subunit; Provisional

Probab=95.91  E-value=0.039  Score=60.20  Aligned_cols=24  Identities=33%  Similarity=0.537  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .++++||||+|||++.+.+++.+.
T Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~   59 (319)
T PLN03025         36 NLILSGPPGTGKTTSILALAHELL   59 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh
Confidence            489999999999999999999873

>PRK13531 regulatory ATPase RavA; Provisional

Probab=95.90  E-value=0.017  Score=66.18  Aligned_cols=124  Identities=13%  Similarity=0.154  Sum_probs=71.9

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHh
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAV  672 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~  672 (741)
                      +..+...+..+..|+|.||||+|||++.+.|+++...-+ +....  +-...+..+++|..+... .=.+|-+.....  
T Consensus        29 I~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~--~~~fttp~DLfG~l~i~~-~~~~g~f~r~~~--  102 (498)
T PRK13531         29 IRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYL--MTRFSTPEEVFGPLSIQA-LKDEGRYQRLTS--  102 (498)
T ss_pred             HHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcccC-cceee--eeeecCcHHhcCcHHHhh-hhhcCchhhhcC--
Confidence            445667778899999999999999999999999875322 21111  111113469999752100 001233321111  


Q ss_pred             cCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        673 NKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       673 ~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                           +.-....-+++|  +...+.--..|-.+|.+. ..+. .|+..++|.  ++|+=.+
T Consensus       103 -----G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er-~~t~-g~~~~~lp~--rfiv~AT  154 (498)
T PRK13531        103 -----GYLPEAEIVFLDEIWKAGPAILNTLLTAINER-RFRN-GAHEEKIPM--RLLVTAS  154 (498)
T ss_pred             -----CccccccEEeecccccCCHHHHHHHHHHHHhC-eEec-CCeEEeCCC--cEEEEEC
Confidence                 101123488889  667777766676777554 3443 566677664  4544443

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=95.89  E-value=0.026  Score=67.49  Aligned_cols=28  Identities=21%  Similarity=0.396  Sum_probs=25.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ..|.++++||+|+||||+.+.|++.+..
T Consensus        37 L~HAyLFtGPpGvGKTTlAriLAKaLnC   64 (830)
T PRK07003         37 LHHAYLFTGTRGVGKTTLSRIFAKALNC   64 (830)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3789999999999999999999999863

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=95.85  E-value=0.019  Score=57.37  Aligned_cols=31  Identities=29%  Similarity=0.418  Sum_probs=25.7

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      |.|.|+|||||||+.+.|++.+...|.++.+
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~   32 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVV   32 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence            6799999999999999999998765554443

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=95.80  E-value=0.023  Score=63.88  Aligned_cols=28  Identities=29%  Similarity=0.536  Sum_probs=25.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ..|++++.||+|+|||++.+.+++++..
T Consensus        35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c   62 (394)
T PRK07940         35 MTHAWLFTGPPGSGRSVAARAFAAALQC   62 (394)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            4689999999999999999999998743

>PRK06762 hypothetical protein; Provisional

Probab=95.77  E-value=0.013  Score=57.23  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=27.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS  645 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t  645 (741)
                      .-|+++|+|||||||+.+.|++.+.     ..+..+++..+-
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l~-----~~~~~i~~D~~r   39 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERLG-----RGTLLVSQDVVR   39 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEecHHHHH
Confidence            3578999999999999999998872     134455554443

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=95.74  E-value=0.033  Score=58.45  Aligned_cols=123  Identities=17%  Similarity=0.200  Sum_probs=64.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCC--CC-cccC---hHHHHHH---Hhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET--RD-WYDG---LLSNIFR---AVN  673 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t--~e-W~DG---vls~i~R---~~~  673 (741)
                      -..++++|++|||||+++..|...+...  --.++.+-|  ....++|+++-|+-  .. =.|+   .+.....   +..
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~--~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~   88 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP--EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYI   88 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec--CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHh
Confidence            3478899999999999999887765432  133455555  33355666553321  00 0122   2222222   111


Q ss_pred             C-CCCCCCCCCeEEEEcCCCChhhhhhccccccCCcee-eccCCCeeecCCCceEEEEeCCCCCCCCCCC
Q psy17620        674 K-PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKIL-TLANGERIRLLAHCQLLFEIHPIQSDSHPRR  741 (741)
Q Consensus       674 ~-~~~~~~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L-~L~nGeri~l~~~~rliFE~~~L~~aSPAt~  741 (741)
                      . ........+.-||||--.+. .   +    -++... .+.+|...    ++.++|=+++-.+..|.+|
T Consensus        89 ~k~~~~k~~~~~LiIlDD~~~~-~---~----k~~~l~~~~~~gRH~----~is~i~l~Q~~~~lp~~iR  146 (241)
T PF04665_consen   89 KKSPQKKNNPRFLIILDDLGDK-K---L----KSKILRQFFNNGRHY----NISIIFLSQSYFHLPPNIR  146 (241)
T ss_pred             hhhcccCCCCCeEEEEeCCCCc-h---h----hhHHHHHHHhccccc----ceEEEEEeeecccCCHHHh
Confidence            1 11111245789999943331 1   1    111011 12356544    4678888888877777766

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK08233 hypothetical protein; Provisional

Probab=95.74  E-value=0.013  Score=57.82  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|.|.|+|||||||+.+.|++.+.
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3567889999999999999999874

>PRK08181 transposase; Validated

Probab=95.73  E-value=0.086  Score=56.36  Aligned_cols=37  Identities=24%  Similarity=0.377  Sum_probs=29.3

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      ...+.+++++||||+|||.+...++......|..+.+
T Consensus       103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f  139 (269)
T PRK08181        103 LAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLF  139 (269)
T ss_pred             HhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceee
Confidence            4567789999999999999999999876555555433

>PF13173 AAA_14: AAA domain

Probab=95.72  E-value=0.018  Score=54.07  Aligned_cols=86  Identities=23%  Similarity=0.363  Sum_probs=51.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      ++..++|.||.|+||||+++.+++.+.   .+-.+..+|-....   ..+..+      .+  +...+++...      .
T Consensus         1 n~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~---~~~~~~------~~--~~~~~~~~~~------~   60 (128)
T PF13173_consen    1 NRKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPR---DRRLAD------PD--LLEYFLELIK------P   60 (128)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHH---HHHHhh------hh--hHHHHHHhhc------c
Confidence            367899999999999999999987753   11122222211111   011111      11  3344443311      2


Q ss_pred             CCeEEEEc-CCCChhhhhhccccccCC
Q psy17620        682 ERKYILFD-GDVDALWIENMNSVMDDN  707 (741)
Q Consensus       682 ~~~WIVfD-G~vd~~wiE~LNsvLDdn  707 (741)
                      ...+|++| -.--|.|.+.++.+.|+.
T Consensus        61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~   87 (128)
T PF13173_consen   61 GKKYIFIDEIQYLPDWEDALKFLVDNG   87 (128)
T ss_pred             CCcEEEEehhhhhccHHHHHHHHHHhc
Confidence            56899999 334578999999999965

>TIGR00368 Mg chelatase-related protein

Probab=95.65  E-value=0.029  Score=64.99  Aligned_cols=117  Identities=18%  Similarity=0.233  Sum_probs=74.4

Q ss_pred             HhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeE----------------------EEEeCCCccccccccccccCC
Q psy17620        599 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR----------------------TYTLNPKAVSVIELYGVLNPE  656 (741)
Q Consensus       599 ~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~----------------------~~~inpka~t~~eLyG~~d~~  656 (741)
                      .....|.++++||||||||++.+.+...+..+.....                      .++--+.+.+...++|.-   
T Consensus       207 aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg---  283 (499)
T TIGR00368       207 AAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGG---  283 (499)
T ss_pred             hccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCc---
Confidence            3445788999999999999999999876543321100                      001111223333444421   


Q ss_pred             CCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCC
Q psy17620        657 TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHP  732 (741)
Q Consensus       657 t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~  732 (741)
                       ...+.|.++.             ..+-.+++|  -.+++.-.+.|...|++..+-.-..|-.+..|.++++|.-++.
T Consensus       284 -~~~~pG~i~l-------------A~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Np  347 (499)
T TIGR00368       284 -PIPLPGEISL-------------AHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNP  347 (499)
T ss_pred             -cccchhhhhc-------------cCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCC
Confidence             1124454421             234588889  4468888999999999876544456666778999999998764

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=95.65  E-value=0.036  Score=52.72  Aligned_cols=29  Identities=28%  Similarity=0.455  Sum_probs=23.4

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      ++|+||||+|||++.+.++......+.++
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v   30 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKV   30 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence            68999999999999999988775544443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK08084 DNA replication initiation factor; Provisional

Probab=95.65  E-value=0.011  Score=61.78  Aligned_cols=35  Identities=14%  Similarity=0.148  Sum_probs=26.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEE
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY  637 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~  637 (741)
                      ...++|+||+|||||++.+.++......|..+.+.
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~   79 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYV   79 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            35899999999999999999998765444444333

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.64  E-value=0.019  Score=67.80  Aligned_cols=126  Identities=18%  Similarity=0.306  Sum_probs=66.2

Q ss_pred             HHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEE-EEeCC-----Cc--cc---cccccccccCCCCCcccCh-
Q psy17620        597 YETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART-YTLNP-----KA--VS---VIELYGVLNPETRDWYDGL-  664 (741)
Q Consensus       597 ~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~-~~inp-----ka--~t---~~eLyG~~d~~t~eW~DGv-  664 (741)
                      ++.-+..|..+++||+|+||||+.+.|++++...+..... ....|     .+  +.   ..+++ .+|+.+   .-|+ 
T Consensus        32 l~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDvi-EIdAas---~~gVD  107 (700)
T PRK12323         32 LEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYI-EMDAAS---NRGVD  107 (700)
T ss_pred             HHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcce-Eecccc---cCCHH
Confidence            3333457899999999999999999999998642100000 00000     00  00   01111 223321   1222 


Q ss_pred             -HHHHHHHhcCCCCCCCCCCeEEEEcCCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCCCCCCCC
Q psy17620        665 -LSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDSHP  739 (741)
Q Consensus       665 -ls~i~R~~~~~~~~~~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L~~aSPA  739 (741)
                       +..++......  ......|.+|+| ++|..=.+..|.+|-     +|   |  .-|+++.|||-+++.....|.
T Consensus       108 dIReLie~~~~~--P~~gr~KViIID-Eah~Ls~~AaNALLK-----TL---E--EPP~~v~FILaTtep~kLlpT  170 (700)
T PRK12323        108 EMAQLLDKAVYA--PTAGRFKVYMID-EVHMLTNHAFNAMLK-----TL---E--EPPEHVKFILATTDPQKIPVT  170 (700)
T ss_pred             HHHHHHHHHHhc--hhcCCceEEEEE-ChHhcCHHHHHHHHH-----hh---c--cCCCCceEEEEeCChHhhhhH
Confidence             22223222111  113467899999 355544466676652     11   1  135678888888887766543

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.59  E-value=0.01  Score=54.57  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=20.8

Q ss_pred             EEEEecCCCChhHHHHHHHHHh
Q psy17620        606 TMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      |+|.|+|||||||+.+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999985

...

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=95.55  E-value=0.055  Score=57.62  Aligned_cols=37  Identities=19%  Similarity=0.408  Sum_probs=28.2

Q ss_pred             HHHHHHHhhccce-EEEEecCCCChhHHHHHHHHHhcc
Q psy17620        593 VVQMYETMLTRHS-TMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       593 v~qL~e~l~~r~g-v~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +..|.+++...+| |++.||+||||||+++.+...+..
T Consensus        69 ~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~  106 (264)
T cd01129          69 LEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNT  106 (264)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence            3445566655555 789999999999999998877643

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>COG3911 Predicted ATPase [General function prediction only]

Probab=95.54  E-value=0.011  Score=57.11  Aligned_cols=83  Identities=19%  Similarity=0.322  Sum_probs=47.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCccc-ChHHHHHHHhcCCCCCCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYD-GLLSNIFRAVNKPLDPGSKE  682 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~D-Gvls~i~R~~~~~~~~~~~~  682 (741)
                      .-++|.|-||+||||++..|+.+=-     ..+...--..+-.+..-|..+   .-|+| |.|..++-.+..........
T Consensus        10 ~~fIltGgpGaGKTtLL~aLa~~Gf-----atvee~~r~ii~~es~~gg~~---lPW~D~~afael~~~~~l~q~r~~~~   81 (183)
T COG3911          10 KRFILTGGPGAGKTTLLAALARAGF-----ATVEEAGRDIIALESAQGGTA---LPWTDPGAFAELVGLQRLRQTRSAAV   81 (183)
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHcCc-----eeeccchhhHHHHHHhcCCCc---CCccChHHHHHHHHHHHHHHhhcccc
Confidence            3678999999999999999998721     111112122233344445332   34988 45555443221110011235


Q ss_pred             CeEEEEc-CCCCh
Q psy17620        683 RKYILFD-GDVDA  694 (741)
Q Consensus       683 ~~WIVfD-G~vd~  694 (741)
                      .--+.|| |++|+
T Consensus        82 ~~~vFfDR~~~da   94 (183)
T COG3911          82 GGRVFFDRGPPDA   94 (183)
T ss_pred             cCceeeccCcHHH
Confidence            5689999 88876

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.53  E-value=0.033  Score=54.70  Aligned_cols=101  Identities=21%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccc--ccCCC--------------CCcccC--
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV--LNPET--------------RDWYDG--  663 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~--~d~~t--------------~eW~DG--  663 (741)
                      ..+-+.+.|+||+||||++.-+++.+...|.++- -.+-|+.-.-...-|+  .|-+|              +-=+.|  
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg-Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~   82 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG-GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN   82 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceee-eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence            3567899999999999999999998876543210 0011111111111111  01111              111223  


Q ss_pred             ------hHHHHHHHhcCCCCCCCCCCeEEEEc--CCC---ChhhhhhccccccCCcee
Q psy17620        664 ------LLSNIFRAVNKPLDPGSKERKYILFD--GDV---DALWIENMNSVMDDNKIL  710 (741)
Q Consensus       664 ------vls~i~R~~~~~~~~~~~~~~WIVfD--G~v---d~~wiE~LNsvLDdnk~L  710 (741)
                            +...++|++..       ...-||.|  ||+   .+.+.+.+..+|++.|-|
T Consensus        83 v~~le~i~~~al~rA~~-------~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpl  133 (179)
T COG1618          83 VEGLEEIAIPALRRALE-------EADVIIIDEIGPMELKSKKFREAVEEVLKSGKPL  133 (179)
T ss_pred             HHHHHHHhHHHHHHHhh-------cCCEEEEecccchhhccHHHHHHHHHHhcCCCcE
Confidence                  34455555543       24699999  887   678999999999776633

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=95.52  E-value=0.03  Score=61.53  Aligned_cols=120  Identities=19%  Similarity=0.234  Sum_probs=77.7

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC-C--CCcccChHHH
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE-T--RDWYDGLLSN  667 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~-t--~eW~DGvls~  667 (741)
                      ++........+|+|.|++||||+++.+.+.....+-+.  ....+|..+++.    .+|||+-... |  ..-..|.+..
T Consensus        14 ~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~--pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~   91 (329)
T TIGR02974        14 QVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQG--PLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFER   91 (329)
T ss_pred             HHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCC--CeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhh
Confidence            45555667889999999999999999998876543322  345566665543    5678864211 0  1122343321


Q ss_pred             HHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        668 IFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       668 i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                                   ...--+++|  +.+++..-..|-.+|++...-.+.+..  ..+.++|+|+-++
T Consensus        92 -------------a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~RiI~at~  142 (329)
T TIGR02974        92 -------------ADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQ--TLQVDVRLVCATN  142 (329)
T ss_pred             -------------CCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCc--eeccceEEEEech
Confidence                         233568899  567888888888888887655554333  4567799999774

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.50  E-value=0.044  Score=64.92  Aligned_cols=29  Identities=28%  Similarity=0.409  Sum_probs=26.2

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ...|..++.||+|+||||+.+.|++++..
T Consensus        36 rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC   64 (618)
T PRK14951         36 RLHHAYLFTGTRGVGKTTVSRILAKSLNC   64 (618)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            45688999999999999999999999864

>KOG1533|consensus

Probab=95.50  E-value=0.012  Score=60.87  Aligned_cols=41  Identities=27%  Similarity=0.557  Sum_probs=35.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV  644 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~  644 (741)
                      -|.+++|||||||||-..-..+.++.+|+++-+.-++|.--
T Consensus         3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd   43 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAND   43 (290)
T ss_pred             cceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCccc
Confidence            47899999999999999999999999999888888887643

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=95.48  E-value=0.073  Score=57.35  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=22.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.++++||+|+|||++.+.+++.+.
T Consensus        39 ~~~ll~G~~G~GKt~~~~~l~~~l~   63 (319)
T PRK00440         39 PHLLFAGPPGTGKTTAALALARELY   63 (319)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHc
Confidence            3589999999999999999998864

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.45  E-value=0.065  Score=62.36  Aligned_cols=29  Identities=24%  Similarity=0.408  Sum_probs=26.3

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ...|..+++||+|+||||+.+.+++++..
T Consensus        36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   64 (509)
T PRK14958         36 YLHHAYLFTGTRGVGKTTISRILAKCLNC   64 (509)
T ss_pred             CCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            45788999999999999999999999864

>PRK13808 adenylate kinase; Provisional

Probab=95.44  E-value=0.023  Score=62.31  Aligned_cols=23  Identities=30%  Similarity=0.596  Sum_probs=21.3

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|+|||||||||.-+.|++.++
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~yg   25 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYG   25 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            88999999999999999998864

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=95.43  E-value=0.12  Score=60.55  Aligned_cols=125  Identities=15%  Similarity=0.223  Sum_probs=72.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccC-----CCCeEEEEeCCCcc--c----ccccccccc-CCCC-----------C
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVL-----GYPARTYTLNPKAV--S----VIELYGVLN-PETR-----------D  659 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~-----~~~~~~~~inpka~--t----~~eLyG~~d-~~t~-----------e  659 (741)
                      .+.|+|+||||+|||++.+.+.+...+.     +..-....+|..+.  +    .+.++|+.+ |...           +
T Consensus        86 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~  165 (531)
T TIGR02902        86 PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQ  165 (531)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCccc
Confidence            4689999999999999999987643221     11123344554321  1    235566532 2100           0


Q ss_pred             cccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeec-----cCCCe----------eecCC
Q psy17620        660 WYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTL-----ANGER----------IRLLA  722 (741)
Q Consensus       660 W~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L-----~nGer----------i~l~~  722 (741)
                      =+.|.++             ...+.-+++|  +.+++...+.|-.+|+|.+...-     ++++.          -..|.
T Consensus       166 ~~~G~l~-------------~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (531)
T TIGR02902       166 PKPGAVT-------------RAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPA  232 (531)
T ss_pred             ccCchhh-------------ccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCccc
Confidence            0112111             2345789999  67888888888888877654432     11111          13466


Q ss_pred             CceEEEEeC-CCCCCCCCC
Q psy17620        723 HCQLLFEIH-PIQSDSHPR  740 (741)
Q Consensus       723 ~~rliFE~~-~L~~aSPAt  740 (741)
                      ++|+|+-|+ ++....||-
T Consensus       233 d~rlI~ATt~~p~~L~paL  251 (531)
T TIGR02902       233 DFRLIGATTRNPEEIPPAL  251 (531)
T ss_pred             ceEEEEEecCCcccCChHH
Confidence            788888765 566666664

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=95.38  E-value=0.0071  Score=61.35  Aligned_cols=85  Identities=18%  Similarity=0.298  Sum_probs=46.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccc-----ccccc--------ccCCCCCcccChHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI-----ELYGV--------LNPETRDWYDGLLSNI  668 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~-----eLyG~--------~d~~t~eW~DGvls~i  668 (741)
                      ....+++.|+||||||++++.+...+.    ...+..|||..+-..     ++...        ..+....|.+.++..+
T Consensus        14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a   89 (199)
T PF06414_consen   14 KPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYA   89 (199)
T ss_dssp             S-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            445788999999999999999988763    234556776654321     11111        1111124666666666


Q ss_pred             HHHhcCCCCCCCCCCeEEEEcCCC-Chhhhhhcc
Q psy17620        669 FRAVNKPLDPGSKERKYILFDGDV-DALWIENMN  701 (741)
Q Consensus       669 ~R~~~~~~~~~~~~~~WIVfDG~v-d~~wiE~LN  701 (741)
                      +.           .+.=|||||.. ++.+...+-
T Consensus        90 ~~-----------~~~nii~E~tl~~~~~~~~~~  112 (199)
T PF06414_consen   90 IE-----------NRYNIIFEGTLSNPSKLRKLI  112 (199)
T ss_dssp             HH-----------CT--EEEE--TTSSHHHHHHH
T ss_pred             HH-----------cCCCEEEecCCCChhHHHHHH
Confidence            65           34568889887 456766443

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK04195 replication factor C large subunit; Provisional

Probab=95.35  E-value=0.073  Score=61.56  Aligned_cols=25  Identities=28%  Similarity=0.575  Sum_probs=23.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .++++|+||||+|||++.+.+++.+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            5789999999999999999999886

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=95.33  E-value=0.028  Score=60.82  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=21.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .|.++++||||+|||++.+.+++.+
T Consensus        43 ~~~lll~G~~G~GKT~la~~l~~~~   67 (316)
T PHA02544         43 PNMLLHSPSPGTGKTTVAKALCNEV   67 (316)
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            4566679999999999999998875

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=95.30  E-value=0.015  Score=58.18  Aligned_cols=87  Identities=18%  Similarity=0.361  Sum_probs=55.0

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCC
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS  680 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~  680 (741)
                      ...+++++.||||+|||.+...++..+-..|.++.+.       +..+|+..+..   .+.+|-....++++..      
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-------~~~~L~~~l~~---~~~~~~~~~~~~~l~~------  108 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-------TASDLLDELKQ---SRSDGSYEELLKRLKR------  108 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-------EHHHHHHHHHC---CHCCTTHCHHHHHHHT------
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-------ecCceeccccc---cccccchhhhcCcccc------
Confidence            4577999999999999999999988765556555443       34566666542   2456656666776643      


Q ss_pred             CCCeEEEEc--C--CCChhhhhhcccccc
Q psy17620        681 KERKYILFD--G--DVDALWIENMNSVMD  705 (741)
Q Consensus       681 ~~~~WIVfD--G--~vd~~wiE~LNsvLD  705 (741)
                        ..-+|+|  |  +.+....+.|..++|
T Consensus       109 --~dlLilDDlG~~~~~~~~~~~l~~ii~  135 (178)
T PF01695_consen  109 --VDLLILDDLGYEPLSEWEAELLFEIID  135 (178)
T ss_dssp             --SSCEEEETCTSS---HHHHHCTHHHHH
T ss_pred             --ccEecccccceeeecccccccchhhhh
Confidence              2588999  3  345556666666665

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.29  E-value=0.012  Score=60.45  Aligned_cols=26  Identities=31%  Similarity=0.563  Sum_probs=21.8

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHH
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .....|.++|||||||||+++++..-
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            34567899999999999999998753

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=95.27  E-value=0.088  Score=56.62  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=31.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccC-C-CCeEEEEeCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVL-G-YPARTYTLNP  641 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~-~~~~~~~inp  641 (741)
                      ...++++||+|+||||++..|+..+... | .++.+...+|
T Consensus       194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~  234 (282)
T TIGR03499       194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT  234 (282)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence            3468899999999999999999887654 4 5666666666

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=95.26  E-value=0.17  Score=60.37  Aligned_cols=101  Identities=17%  Similarity=0.303  Sum_probs=55.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCC-C----CeEEEEeCCCcccc------ccccccccCCCCCcccChHHH---H
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLG-Y----PARTYTLNPKAVSV------IELYGVLNPETRDWYDGLLSN---I  668 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~-~----~~~~~~inpka~t~------~eLyG~~d~~t~eW~DGvls~---i  668 (741)
                      ...++|+|||||||||+.+.+.+...... .    ......+|...+..      ..++|...       +.....   .
T Consensus       175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~-------~~~~~~a~~~  247 (615)
T TIGR02903       175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVH-------DPIYQGARRD  247 (615)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCcc-------HHHHHHHHHH
Confidence            45699999999999999999987654321 1    12344444333221      23455431       222111   1


Q ss_pred             HHHhcCCC--CC--CCCCCeEEEEc--CCCChhhhhhccccccCCcee
Q psy17620        669 FRAVNKPL--DP--GSKERKYILFD--GDVDALWIENMNSVMDDNKIL  710 (741)
Q Consensus       669 ~R~~~~~~--~~--~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L  710 (741)
                      +.......  .+  ......-+++|  +.+|+.-.+.|-.+|++.+.+
T Consensus       248 l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~  295 (615)
T TIGR02903       248 LAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVE  295 (615)
T ss_pred             HHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEE
Confidence            11111000  00  01123479999  567888888888888775543

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=95.25  E-value=0.014  Score=56.89  Aligned_cols=27  Identities=26%  Similarity=0.356  Sum_probs=24.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....|+|+|+|||||||+-+.|++.++
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~   29 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLG   29 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999999874

>PRK06217 hypothetical protein; Validated

Probab=95.24  E-value=0.024  Score=56.66  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|.|+|||||||+.+.|++.++
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~   26 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLD   26 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            389999999999999999998863

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.22  E-value=0.027  Score=61.88  Aligned_cols=50  Identities=24%  Similarity=0.256  Sum_probs=41.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc-ccccccc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-SVIELYG  651 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~-t~~eLyG  651 (741)
                      ..+.|-|.|+|||||||+++.|...+...|.++-+..++|.+. +-..+.|
T Consensus        55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallg  105 (332)
T PRK09435         55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILG  105 (332)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhc
Confidence            4567889999999999999999999988888899999999874 2233444

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=95.19  E-value=0.064  Score=58.36  Aligned_cols=32  Identities=28%  Similarity=0.486  Sum_probs=26.9

Q ss_pred             HHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        597 YETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       597 ~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..++..+..++++||+||||||+++.|.+.+.
T Consensus       138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~  169 (308)
T TIGR02788       138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIP  169 (308)
T ss_pred             HHHhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            34556788999999999999999999987764

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=95.18  E-value=0.075  Score=58.34  Aligned_cols=121  Identities=18%  Similarity=0.218  Sum_probs=75.2

Q ss_pred             HHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCC-CCC--cccChHH
Q psy17620        594 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPE-TRD--WYDGLLS  666 (741)
Q Consensus       594 ~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~-t~e--W~DGvls  666 (741)
                      .++........+|+|+|++||||+++.+.+......-+.  ....+|..+++    ..++||.-... ++.  =.-|.+ 
T Consensus        20 ~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~--pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l-   96 (326)
T PRK11608         20 EQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQG--PFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRF-   96 (326)
T ss_pred             HHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCC--CeEEEeCCCCCHHHHHHHHccccccccCCcccccCCch-
Confidence            345566677889999999999999999998865433222  34566666665    35678754211 000  012332 


Q ss_pred             HHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        667 NIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       667 ~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                         .+         ...--+++|  +.+++.--+.|-.+++++....+...+  ..+.++|+|+-++
T Consensus        97 ---~~---------a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~--~~~~~~RiI~~s~  149 (326)
T PRK11608         97 ---ER---------ADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQ--PLQVNVRLVCATN  149 (326)
T ss_pred             ---hc---------cCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCc--eeeccEEEEEeCc
Confidence               11         122357888  456777777888888887655443333  5556789998653

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.18  E-value=0.044  Score=62.29  Aligned_cols=95  Identities=22%  Similarity=0.309  Sum_probs=56.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc--cCCCCeEEEEeCCCccc-cccc--ccccc--CCCCCcccChHHHHHHHhcCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST--VLGYPARTYTLNPKAVS-VIEL--YGVLN--PETRDWYDGLLSNIFRAVNKP  675 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~--~~~~~~~~~~inpka~t-~~eL--yG~~d--~~t~eW~DGvls~i~R~~~~~  675 (741)
                      ...++++||+|+||||++-.|+..+.  .-|.++.+...+|.-.. .++|  |+...  |........=+...+++..  
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~--  298 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR--  298 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence            45789999999999999999988876  33456666666664211 1222  22210  0000111122344444332  


Q ss_pred             CCCCCCCCeEEEEcCC----CChhhhhhcccccc
Q psy17620        676 LDPGSKERKYILFDGD----VDALWIENMNSVMD  705 (741)
Q Consensus       676 ~~~~~~~~~WIVfDG~----vd~~wiE~LNsvLD  705 (741)
                            ...+|++|.+    .|+.-++.|..+++
T Consensus       299 ------~~DlVlIDt~G~~~~d~~~~~~L~~ll~  326 (424)
T PRK05703        299 ------DCDVILIDTAGRSQRDKRLIEELKALIE  326 (424)
T ss_pred             ------CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence                  3589999944    56677777877776

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.17  E-value=0.026  Score=62.88  Aligned_cols=27  Identities=26%  Similarity=0.469  Sum_probs=24.7

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..|++++.||+|+||||+.+.+++.+.
T Consensus        37 ~~h~~L~~Gp~G~GKTtla~~la~~l~   63 (363)
T PRK14961         37 IHHAWLLSGTRGVGKTTIARLLAKSLN   63 (363)
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence            458899999999999999999999975

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=95.14  E-value=0.038  Score=59.59  Aligned_cols=88  Identities=24%  Similarity=0.348  Sum_probs=55.5

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhccCC-------------------CCeEEEEeCCCccccccccccccCCCCCcc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLG-------------------YPARTYTLNPKAVSVIELYGVLNPETRDWY  661 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~-------------------~~~~~~~inpka~t~~eLyG~~d~~t~eW~  661 (741)
                      ...|.+++.||||+|||+....|++.+...+                   .+..++.+||.......             
T Consensus        22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-------------   88 (325)
T COG0470          22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-------------   88 (325)
T ss_pred             CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-------------
Confidence            4567899999999999999999999875321                   22456666665433211             


Q ss_pred             cChHHHHHHHhcCCCC--CCCCCCeEEEEcCCCChhhhhhccccc
Q psy17620        662 DGLLSNIFRAVNKPLD--PGSKERKYILFDGDVDALWIENMNSVM  704 (741)
Q Consensus       662 DGvls~i~R~~~~~~~--~~~~~~~WIVfDG~vd~~wiE~LNsvL  704 (741)
                        +....+|++.....  +.....+-|++| ++|..-.+.-|.++
T Consensus        89 --i~~~~vr~~~~~~~~~~~~~~~kviiid-ead~mt~~A~nall  130 (325)
T COG0470          89 --IIVEQVRELAEFLSESPLEGGYKVVIID-EADKLTEDAANALL  130 (325)
T ss_pred             --chHHHHHHHHHHhccCCCCCCceEEEeC-cHHHHhHHHHHHHH
Confidence              44555666543221  112567899999 56665555555543

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=95.14  E-value=0.032  Score=61.12  Aligned_cols=35  Identities=26%  Similarity=0.405  Sum_probs=30.6

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ...|..++..+..++++|+|||||||+++.|...+
T Consensus       134 ~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        134 ASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            44567777888999999999999999999999876

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.14  E-value=0.013  Score=60.85  Aligned_cols=27  Identities=37%  Similarity=0.523  Sum_probs=22.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ..-|.|+|||||||||+++.+......
T Consensus        31 Ge~vaI~GpSGSGKSTLLniig~ld~p   57 (226)
T COG1136          31 GEFVAIVGPSGSGKSTLLNLLGGLDKP   57 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            345889999999999999998876543

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=95.13  E-value=0.075  Score=62.08  Aligned_cols=119  Identities=17%  Similarity=0.237  Sum_probs=74.3

Q ss_pred             HHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccC---CCCCcccChHHHH
Q psy17620        596 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNP---ETRDWYDGLLSNI  668 (741)
Q Consensus       596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~---~t~eW~DGvls~i  668 (741)
                      +-.......+|+|.|++||||+.+.+.+..+..+-+.  ....+|..+++.    .+|||+...   ...+.+.|+|.. 
T Consensus       220 ~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~--pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~-  296 (520)
T PRK10820        220 ARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKK--PFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQ-  296 (520)
T ss_pred             HHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCC--CeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhh-
Confidence            3344556789999999999999999998776433222  344567666654    478987531   112445665542 


Q ss_pred             HHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        669 FRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       669 ~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                         +         ..--+++|  +.+++.--..|-.+|.++..-.+  |+.-..+.++|+|+-++
T Consensus       297 ---a---------~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~vRiI~st~  347 (520)
T PRK10820        297 ---A---------NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRV--GEDHEVHVDVRVICATQ  347 (520)
T ss_pred             ---c---------CCCEEEEeChhhCCHHHHHHHHHHHhcCCcccC--CCCcceeeeeEEEEecC
Confidence               1         22458888  55677666677777776644333  33333455788888553

>KOG3062|consensus

Probab=95.12  E-value=0.031  Score=57.42  Aligned_cols=50  Identities=22%  Similarity=0.324  Sum_probs=34.6

Q ss_pred             CCcccChHHHHHHHhcCCCCCCCCCCeE----EEEcCCCChhhhhhccccccCCceee
Q psy17620        658 RDWYDGLLSNIFRAVNKPLDPGSKERKY----ILFDGDVDALWIENMNSVMDDNKILT  711 (741)
Q Consensus       658 ~eW~DGvls~i~R~~~~~~~~~~~~~~W----IVfDG~vd~~wiE~LNsvLDdnk~L~  711 (741)
                      ..|.|++|..++++.-++..    .++|    +.+=++.++.-++.+-++|=+||-+.
T Consensus       128 ~gy~~e~le~L~~RyEeP~s----~NRWDsPLf~ll~~~~~~~~~~I~~al~~nk~~~  181 (281)
T KOG3062|consen  128 DGYDDELLEALVQRYEEPNS----RNRWDSPLFTLLPDVITLPIDDILKALFENKPLP  181 (281)
T ss_pred             CCCCHHHHHHHHHHhhCCCc----cccccCcceEEecccCCCcHHHHHHHHhcCCCCC
Confidence            34999999999999865432    3344    22334667777888888888888743

>KOG1534|consensus

Probab=95.11  E-value=0.017  Score=58.73  Aligned_cols=44  Identities=25%  Similarity=0.512  Sum_probs=38.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS  645 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t  645 (741)
                      .+-++++.||+||||||-.+.+......+|+..++.-++|.+..
T Consensus         2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~   45 (273)
T KOG1534|consen    2 MRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEH   45 (273)
T ss_pred             CceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHh
Confidence            35689999999999999999999988888998888888887643

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=95.11  E-value=0.034  Score=60.36  Aligned_cols=36  Identities=33%  Similarity=0.529  Sum_probs=30.8

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|..++..+..++++||+||||||+.+.|.+.+.
T Consensus       122 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~  157 (299)
T TIGR02782       122 RDVLREAVLARKNILVVGGTGSGKTTLANALLAEIA  157 (299)
T ss_pred             HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            344667778889999999999999999999998864

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=95.10  E-value=0.069  Score=59.39  Aligned_cols=31  Identities=26%  Similarity=0.533  Sum_probs=24.9

Q ss_pred             HHhh-ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        598 ETML-TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       598 e~l~-~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.+. .+--|+++||+||||||+++.|.+.+.
T Consensus       128 ~~~~~~~glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       128 DAIAPQEGIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             HHHhccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3444 345688999999999999999998874

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=95.10  E-value=0.019  Score=48.13  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=20.6

Q ss_pred             EEEEecCCCChhHHHHHHHHHh
Q psy17620        606 TMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +.+.|++||||||+.+.|++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999987

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.10  E-value=0.054  Score=60.43  Aligned_cols=105  Identities=18%  Similarity=0.248  Sum_probs=57.8

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhc-cCC-CCeEEEEeCCCccc-cccc--ccccc--CCCCCcccChHHHHHHHhc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTST-VLG-YPARTYTLNPKAVS-VIEL--YGVLN--PETRDWYDGLLSNIFRAVN  673 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~-~~~-~~~~~~~inpka~t-~~eL--yG~~d--~~t~eW~DGvls~i~R~~~  673 (741)
                      .....++++||+|+||||++..|+..+. ..| .++-+...++--+. .++|  ||..-  |....=..+-+...++++.
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~  214 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR  214 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence            3466889999999999999999998653 233 23333333332111 1122  22211  1100112223455555442


Q ss_pred             CCCCCCCCCCeEEEEc----CCCChhhhhhcccccc----CCceeecc
Q psy17620        674 KPLDPGSKERKYILFD----GDVDALWIENMNSVMD----DNKILTLA  713 (741)
Q Consensus       674 ~~~~~~~~~~~WIVfD----G~vd~~wiE~LNsvLD----dnk~L~L~  713 (741)
                              +...|++|    .+.|....|.+..+..    ....|+|+
T Consensus       215 --------~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLs  254 (374)
T PRK14722        215 --------NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLN  254 (374)
T ss_pred             --------CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEec
Confidence                    34799999    3457777777766532    23467766

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=95.10  E-value=0.032  Score=66.28  Aligned_cols=62  Identities=16%  Similarity=0.277  Sum_probs=42.8

Q ss_pred             hccCCCcchhh-------HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        582 DMNLPKFVSED-------VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       582 ~~~lPkl~~~D-------v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      +..+|....++       ...+..++..++.++++||||+|||++.+.+++.+..-......+..||.-
T Consensus         9 ~~~~~~~~~~~viG~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~   77 (608)
T TIGR00764         9 EIPVPERLIDQVIGQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPED   77 (608)
T ss_pred             ccCcchhhHhhccCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCC
Confidence            44566655555       233555666778999999999999999999999886432223345666644

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=95.09  E-value=0.021  Score=57.31  Aligned_cols=34  Identities=29%  Similarity=0.510  Sum_probs=28.6

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|...+..+..++++||+||||||+++.|...+.
T Consensus        17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          17 YLWLAVEARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            3555666788899999999999999999998764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=95.08  E-value=0.067  Score=59.78  Aligned_cols=41  Identities=17%  Similarity=0.280  Sum_probs=31.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV  644 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~  644 (741)
                      ..++|+||||+|||++++.+.+.+...+..+.+..+|....
T Consensus        56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~   96 (394)
T PRK00411         56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID   96 (394)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence            46899999999999999999987755443455666665443

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.08  E-value=0.014  Score=58.54  Aligned_cols=24  Identities=29%  Similarity=0.605  Sum_probs=21.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..++|+||+||||||+.+.|+..+
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            368899999999999999998764

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.04  E-value=0.017  Score=57.23  Aligned_cols=25  Identities=28%  Similarity=0.427  Sum_probs=22.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+++|||||||||+.+.|++.++
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~g   28 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKYG   28 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4578999999999999999998763

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=95.03  E-value=0.1  Score=60.76  Aligned_cols=120  Identities=18%  Similarity=0.245  Sum_probs=79.0

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC-CC--CcccChHHH
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE-TR--DWYDGLLSN  667 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~-t~--eW~DGvls~  667 (741)
                      ++-..-....+|+|.|++||||+.+.+.+.....+.+.  ....+|..+++.    .+|||..... ++  .-+.|.+. 
T Consensus       202 ~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~--p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~-  278 (509)
T PRK05022        202 EIEVVAASDLNVLILGETGVGKELVARAIHAASPRADK--PLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFE-  278 (509)
T ss_pred             HHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCC--CeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchh-
Confidence            44455567889999999999999999999987544333  355666666653    5789865321 00  11233321 


Q ss_pred             HHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        668 IFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       668 i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                                  ....-.++||  +.+++.--..|-.+|+++..-.+.+..  ..+.++|+|+-++
T Consensus       279 ------------~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~RiI~~t~  330 (509)
T PRK05022        279 ------------LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDR--SLRVDVRVIAATN  330 (509)
T ss_pred             ------------hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCc--ceecceEEEEecC
Confidence                        1233568999  667887778888888887665554443  4455789998775

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.01  E-value=0.015  Score=60.79  Aligned_cols=26  Identities=27%  Similarity=0.495  Sum_probs=22.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-|.|+|||||||||++++++.-..
T Consensus        29 GEfvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44688999999999999999998754

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.01  E-value=0.02  Score=53.19  Aligned_cols=98  Identities=17%  Similarity=0.297  Sum_probs=48.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccC---CCCeEE-EEeCCCccccccccccc----cCCCCC--cccChHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVL---GYPART-YTLNPKAVSVIELYGVL----NPETRD--WYDGLLSNIFRA  671 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~---~~~~~~-~~inpka~t~~eLyG~~----d~~t~e--W~DGvls~i~R~  671 (741)
                      .+..++|+||||+|||++++.+++.+...   ..+..+ +...|...+...++..+    ......  =.+-+...+.+.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~   82 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA   82 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence            45678999999999999999999986431   002222 22223333344443332    111111  112223333333


Q ss_pred             hcCCCCCCCCCCeEEEEcCC--C-Chhhhhhcccccc
Q psy17620        672 VNKPLDPGSKERKYILFDGD--V-DALWIENMNSVMD  705 (741)
Q Consensus       672 ~~~~~~~~~~~~~WIVfDG~--v-d~~wiE~LNsvLD  705 (741)
                      +...      ...-||+|.-  + +...++.|-+++|
T Consensus        83 l~~~------~~~~lviDe~~~l~~~~~l~~l~~l~~  113 (131)
T PF13401_consen   83 LDRR------RVVLLVIDEADHLFSDEFLEFLRSLLN  113 (131)
T ss_dssp             HHHC------TEEEEEEETTHHHHTHHHHHHHHHHTC
T ss_pred             HHhc------CCeEEEEeChHhcCCHHHHHHHHHHHh
Confidence            3221      2268999942  4 6667777777666

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=95.00  E-value=0.025  Score=64.00  Aligned_cols=118  Identities=21%  Similarity=0.323  Sum_probs=78.5

Q ss_pred             HHHHhhccceEEEEecCCCChhHHHHHHHHHhccC---------------C-----CC---eEEEEeCCCcccccccccc
Q psy17620        596 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL---------------G-----YP---ARTYTLNPKAVSVIELYGV  652 (741)
Q Consensus       596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~---------------~-----~~---~~~~~inpka~t~~eLyG~  652 (741)
                      |..+---.|+++++||||||||.+.+-|...+-.+               +     .+   ..-++--+.+.|+..|.|.
T Consensus       191 leiAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGG  270 (490)
T COG0606         191 LEIAAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGG  270 (490)
T ss_pred             HHHHHhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHhCC
Confidence            44555669999999999999999998877654322               1     11   1223344555666777666


Q ss_pred             ccCCCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEe
Q psy17620        653 LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEI  730 (741)
Q Consensus       653 ~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~  730 (741)
                      .    +.-..|-++             ..++--+.+|  +......+|.|..=|.+++...=-.|-.+..|-++.+++-+
T Consensus       271 G----~~p~PGeIs-------------LAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~Am  333 (490)
T COG0606         271 G----GVPRPGEIS-------------LAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAM  333 (490)
T ss_pred             C----CCCCCCcee-------------eecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhc
Confidence            5    122333222             2355688889  67777888888888887766665567778888887777754

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.00  E-value=0.017  Score=57.17  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -++|+|||||||||+.+.|+..+.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            578999999999999999998864

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=94.97  E-value=0.015  Score=63.80  Aligned_cols=24  Identities=25%  Similarity=0.563  Sum_probs=21.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -+.|+|||||||||+++++|.-..
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            488999999999999999998654

>PRK03839 putative kinase; Provisional

Probab=94.94  E-value=0.019  Score=57.03  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|+|+|||||||+-+.|++.++
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~   25 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999999874

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=94.94  E-value=0.019  Score=57.00  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=21.1

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+++|||||||||+.+.|++.++
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~   24 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFG   24 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999864

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14530 adenylate kinase; Provisional

Probab=94.90  E-value=0.02  Score=58.67  Aligned_cols=25  Identities=20%  Similarity=0.380  Sum_probs=22.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|+|||||||||+.+.|++.++
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4589999999999999999999874

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=94.90  E-value=0.036  Score=56.38  Aligned_cols=39  Identities=26%  Similarity=0.362  Sum_probs=29.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK  642 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk  642 (741)
                      +.+++|||+|+||||.+--|+..+...+.++-....+..
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~   40 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY   40 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence            468999999999999999999887655666666666544

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=94.88  E-value=0.021  Score=54.70  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|+|+|+|||||||+.+.|++.++
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~   24 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALG   24 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999998874

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=94.87  E-value=0.057  Score=65.71  Aligned_cols=26  Identities=23%  Similarity=0.569  Sum_probs=23.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+|++|+||||||||++.+.+++.+.
T Consensus       212 ~~giLL~GppGtGKT~laraia~~~~  237 (733)
T TIGR01243       212 PKGVLLYGPPGTGKTLLAKAVANEAG  237 (733)
T ss_pred             CceEEEECCCCCChHHHHHHHHHHhC
Confidence            46999999999999999999998763

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>smart00350 MCM minichromosome maintenance proteins

Probab=94.86  E-value=0.27  Score=57.38  Aligned_cols=86  Identities=22%  Similarity=0.321  Sum_probs=59.4

Q ss_pred             cCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCC----------CCchH
Q psy17620        421 CGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGR----------TELPE  490 (741)
Q Consensus       421 ~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr----------~eLP~  490 (741)
                      .|.-+|+||||+++.+..+.+.       .++..+.-++.-.|....++..|.+.+|+||-+ |+          -.||+
T Consensus       300 ~~Gil~iDEi~~l~~~~q~~L~-------e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~-g~y~~~~~~~~n~~l~~  371 (509)
T smart00350      300 DNGVCCIDEFDKMDDSDRTAIH-------EAMEQQTISIAKAGITTTLNARCSVLAAANPIG-GRYDPKLTPEENIDLPA  371 (509)
T ss_pred             CCCEEEEechhhCCHHHHHHHH-------HHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCC-cccCCCcChhhccCCCh
Confidence            3557899999999998877763       344333223344688888999999999999954 32          28999


Q ss_pred             HHhhcceeeec--cCCCHH---HHHHHHH
Q psy17620        491 SVKALFRPVVC--IVPDFE---LICQIML  514 (741)
Q Consensus       491 nLk~lFRpvam--~~PD~~---~I~ei~L  514 (741)
                      .|-+.|==+..  ..||.+   .|++-.+
T Consensus       372 ~lLsRFdLi~~~~d~~~~~~d~~i~~~i~  400 (509)
T smart00350      372 PILSRFDLLFVVLDEVDEERDRELAKHVV  400 (509)
T ss_pred             HHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence            99999944333  356654   4444443

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=94.86  E-value=0.03  Score=62.01  Aligned_cols=43  Identities=23%  Similarity=0.378  Sum_probs=31.1

Q ss_pred             HHHHhhc--cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        596 MYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       596 L~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      |..++..  -++.|+.||||+||||+-+++++..+     .....+|.-.
T Consensus        39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~-----~~f~~~sAv~   83 (436)
T COG2256          39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN-----AAFEALSAVT   83 (436)
T ss_pred             HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC-----CceEEecccc
Confidence            3444443  45899999999999999999999864     3455555433

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=94.83  E-value=0.029  Score=66.99  Aligned_cols=111  Identities=20%  Similarity=0.236  Sum_probs=73.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccC----C--------------------------CCeEEEEeCCCccccccccccc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVL----G--------------------------YPARTYTLNPKAVSVIELYGVL  653 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~----~--------------------------~~~~~~~inpka~t~~eLyG~~  653 (741)
                      .+|+|.|++|+|||++.+.|++.+-.+    |                          .+..+..+ |-..+...|+|..
T Consensus        26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~-p~~~t~~~l~G~~  104 (633)
T TIGR02442        26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNL-PLGATEDRVVGSL  104 (633)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeC-CCCCcHHHcCCcc
Confidence            689999999999999999999987311    0                          01112223 4556778899987


Q ss_pred             cCC----CCC--cccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCce
Q psy17620        654 NPE----TRD--WYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQ  725 (741)
Q Consensus       654 d~~----t~e--W~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~r  725 (741)
                      |..    +++  .+.|++..             ..+--+++|  ..+++.-.+.|-.+|+++..-.-..|.....+..+.
T Consensus       105 d~~~~l~~g~~~~~~G~L~~-------------A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~  171 (633)
T TIGR02442       105 DIERALREGEKAFQPGLLAE-------------AHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFV  171 (633)
T ss_pred             cHHHHhhcCCeeecCcceee-------------cCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeE
Confidence            642    112  23443321             234578888  447888888888888877655455677777777777


Q ss_pred             EEE
Q psy17620        726 LLF  728 (741)
Q Consensus       726 liF  728 (741)
                      +|.
T Consensus       172 lIa  174 (633)
T TIGR02442       172 LIG  174 (633)
T ss_pred             EEE
Confidence            776

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=94.82  E-value=0.033  Score=54.94  Aligned_cols=36  Identities=31%  Similarity=0.551  Sum_probs=30.8

Q ss_pred             hhHHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        591 EDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       591 ~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +.+.+|.+.+.. +.++++|+||+||||+++.|....
T Consensus        24 ~g~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   24 EGIEELKELLKG-KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             TTHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCHHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhhc
Confidence            337778888877 999999999999999999998763

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=94.80  E-value=0.029  Score=46.39  Aligned_cols=23  Identities=39%  Similarity=0.732  Sum_probs=21.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..+|.||+||||||++.++.-++
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999988776

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=94.78  E-value=0.023  Score=60.20  Aligned_cols=28  Identities=25%  Similarity=0.299  Sum_probs=24.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      ..++++||||||||++.+.+++.+..++
T Consensus        43 ~~vll~GppGtGKTtlA~~ia~~l~~~~   70 (261)
T TIGR02881        43 LHMIFKGNPGTGKTTVARILGKLFKEMN   70 (261)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence            4689999999999999999999876554

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=94.77  E-value=0.045  Score=59.93  Aligned_cols=34  Identities=21%  Similarity=0.519  Sum_probs=29.2

Q ss_pred             HHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        594 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       594 ~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .-|..++..+..++++|+|||||||+.+.|...+
T Consensus       139 ~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~  172 (319)
T PRK13894        139 EAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEM  172 (319)
T ss_pred             HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            3456677788999999999999999999999875

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=94.77  E-value=0.019  Score=56.01  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=20.7

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ++|+||+||||||+.+.|++.+.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~   23 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG   23 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC
Confidence            47899999999999999998864

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK09862 putative ATP-dependent protease; Provisional

Probab=94.76  E-value=0.041  Score=63.71  Aligned_cols=115  Identities=15%  Similarity=0.217  Sum_probs=75.4

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhccCCCCe--E--------------------EEEeCCCccccccccccccCCC
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA--R--------------------TYTLNPKAVSVIELYGVLNPET  657 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~--~--------------------~~~inpka~t~~eLyG~~d~~t  657 (741)
                      ....|.++++||+|||||++.+.+...+.......  .                    .++--|.+.|..-|+|.=    
T Consensus       207 a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg----  282 (506)
T PRK09862        207 AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGG----  282 (506)
T ss_pred             ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCC----
Confidence            34578899999999999999999987764332110  1                    111122233333444431    


Q ss_pred             CCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        658 RDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       658 ~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                      ...+.|.++.             .++-.+++|  ...++.-.+.|...|++...-.-..|..+..|.++++|.-+.
T Consensus       283 ~~~~pG~l~~-------------A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~N  345 (506)
T PRK09862        283 AIPGPGEISL-------------AHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMN  345 (506)
T ss_pred             ceehhhHhhh-------------ccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeec
Confidence            0123343332             245689999  557888999999999988776666777788899999987665

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=94.73  E-value=0.095  Score=57.85  Aligned_cols=40  Identities=25%  Similarity=0.269  Sum_probs=29.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccC----CCCeEEEEeCCCc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVL----GYPARTYTLNPKA  643 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~~~~inpka  643 (741)
                      ..++|+||||+|||++++.+.+.+...    +.++....+|...
T Consensus        41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~   84 (365)
T TIGR02928        41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI   84 (365)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence            579999999999999999998876432    2235566666544

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=94.73  E-value=0.055  Score=61.71  Aligned_cols=119  Identities=16%  Similarity=0.281  Sum_probs=84.4

Q ss_pred             HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCCCCCcccChHHHHHHH-h
Q psy17620        598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPETRDWYDGLLSNIFRA-V  672 (741)
Q Consensus       598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~t~eW~DGvls~i~R~-~  672 (741)
                      ..-.+.-.|+|.|+|||||-.+-+.+.+...+-+.|  ...+|..+++.    .||||+--   +-++.+     .++ .
T Consensus       159 kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~P--FVavNcaAip~~l~ESELFGhek---GAFTGA-----~~~r~  228 (464)
T COG2204         159 KVAPSDASVLITGESGTGKELVARAIHQASPRAKGP--FIAVNCAAIPENLLESELFGHEK---GAFTGA-----ITRRI  228 (464)
T ss_pred             HHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCC--ceeeecccCCHHHHHHHhhcccc---cCcCCc-----ccccC
Confidence            344668899999999999999999999887665444  45678888876    67999841   222221     111 1


Q ss_pred             cCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        673 NKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       673 ~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                      ..-   +..+.--+.+|  |+++..-=-.|=.||.+...-.+.+.+.|+.  ++|+|--|+
T Consensus       229 G~f---E~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~v--dvRiIaaT~  284 (464)
T COG2204         229 GRF---EQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKV--DVRIIAATN  284 (464)
T ss_pred             cce---eEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccce--eeEEEeecC
Confidence            000   12344678999  8898888888889999888888877776554  788987664

>PLN02842 nucleotide kinase

Probab=94.72  E-value=0.048  Score=62.84  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             EEEecCCCChhHHHHHHHHHhc
Q psy17620        607 MIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       607 ~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ||.|+|||||||..+.|++.++
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg   22 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFG   22 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999998874

>PRK10536 hypothetical protein; Provisional

Probab=94.72  E-value=0.059  Score=57.06  Aligned_cols=125  Identities=14%  Similarity=0.207  Sum_probs=72.4

Q ss_pred             HHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCC-----CCcccChHH----
Q psy17620        596 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET-----RDWYDGLLS----  666 (741)
Q Consensus       596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t-----~eW~DGvls----  666 (741)
                      +...+..+.-|++.||+|||||++...++...- +...+...++.-..++..+.+|++ |-+     ..|---+..    
T Consensus        67 ~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l-~~~~~~kIiI~RP~v~~ge~LGfL-PG~~~eK~~p~~~pi~D~L~~  144 (262)
T PRK10536         67 YLKAIESKQLIFATGEAGCGKTWISAAKAAEAL-IHKDVDRIIVTRPVLQADEDLGFL-PGDIAEKFAPYFRPVYDVLVR  144 (262)
T ss_pred             HHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH-hcCCeeEEEEeCCCCCchhhhCcC-CCCHHHHHHHHHHHHHHHHHH
Confidence            444566677899999999999999888877421 122355444444456778888876 322     124222211    


Q ss_pred             --------HHHHH-hcC-------CCCCCCCCCeEEEEc--CCCChhhhhhccccccCCce-eeccCCCeeecCC
Q psy17620        667 --------NIFRA-VNK-------PLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKI-LTLANGERIRLLA  722 (741)
Q Consensus       667 --------~i~R~-~~~-------~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~-L~L~nGeri~l~~  722 (741)
                              ..++. ...       -.++.+-...+||+|  --+++.-+..+.|-+.+|.. +.+.+-..|-+|+
T Consensus       145 ~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~QiD~p~  219 (262)
T PRK10536        145 RLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPR  219 (262)
T ss_pred             HhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChhhccCCC
Confidence                    11110 000       012334567899999  45778777777777766644 4455555555553

>smart00763 AAA_PrkA PrkA AAA domain

Probab=94.72  E-value=0.023  Score=62.75  Aligned_cols=28  Identities=29%  Similarity=0.590  Sum_probs=25.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      .+..+.|+|||||||||+.+.|++.++.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3678999999999999999999999865

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=94.71  E-value=0.024  Score=51.65  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=20.0

Q ss_pred             EEEEecCCCChhHHHHHHHHHh
Q psy17620        606 TMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      |+|+|++|+||||+++.|..-.
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            7899999999999999999764

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=94.70  E-value=0.018  Score=54.62  Aligned_cols=104  Identities=16%  Similarity=0.291  Sum_probs=53.6

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccc--ccCCCC--CcccChHHHHHHHhcCCCCCCCC
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV--LNPETR--DWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~--~d~~t~--eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      |+|.|+||.|||++.+.|++++.   ....-....|. +...++.|.  +|+.++  +|..|.+-               
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~---~~f~RIq~tpd-llPsDi~G~~v~~~~~~~f~~~~GPif---------------   62 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLG---LSFKRIQFTPD-LLPSDILGFPVYDQETGEFEFRPGPIF---------------   62 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT-----EEEEE--TT---HHHHHEEEEEETTTTEEEEEE-TT----------------
T ss_pred             EeeECCCccHHHHHHHHHHHHcC---CceeEEEecCC-CCcccceeeeeeccCCCeeEeecChhh---------------
Confidence            78999999999999999999974   23322223444 445777776  455443  34555321               


Q ss_pred             CCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        682 ERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       682 ~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                       ..++++|  .-..|.---.|-.+|.+. .+++ .|+..++|+.+.+|---.
T Consensus        63 -~~ill~DEiNrappktQsAlLeam~Er-~Vt~-~g~~~~lp~pf~ViATqN  111 (131)
T PF07726_consen   63 -TNILLADEINRAPPKTQSALLEAMEER-QVTI-DGQTYPLPDPFFVIATQN  111 (131)
T ss_dssp             -SSEEEEETGGGS-HHHHHHHHHHHHHS-EEEE-TTEEEE--SS-EEEEEE-
T ss_pred             -hceeeecccccCCHHHHHHHHHHHHcC-eEEe-CCEEEECCCcEEEEEecC
Confidence             2478888  445554333333334333 2232 577888888776654333

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PF13245 AAA_19: Part of AAA domain

Probab=94.70  E-value=0.047  Score=47.01  Aligned_cols=47  Identities=17%  Similarity=0.294  Sum_probs=25.7

Q ss_pred             HhhccceEEEEecCCCChh-HHHHHHHHHhccCC-CCeEEEEeCCCccc
Q psy17620        599 TMLTRHSTMIVGPTGGGKS-VVINALVKTSTVLG-YPARTYTLNPKAVS  645 (741)
Q Consensus       599 ~l~~r~gv~lvGp~gsGKT-t~~~~L~~a~~~~~-~~~~~~~inpka~t  645 (741)
                      .+...+.++|.|||||||| ++.+.++......+ .+-.+.++.|.--.
T Consensus         6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~a   54 (76)
T PF13245_consen    6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAA   54 (76)
T ss_pred             HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHH
Confidence            3342344556999999999 55566555552111 13345555554433

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=94.70  E-value=0.058  Score=54.72  Aligned_cols=48  Identities=25%  Similarity=0.440  Sum_probs=34.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccC--CCCeEEEEeCCCcccccccc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVL--GYPARTYTLNPKAVSVIELY  650 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~--~~~~~~~~inpka~t~~eLy  650 (741)
                      ...++++|+||||||++++++..++-..  ...++++.++||......+.
T Consensus        38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~l~~~~   87 (205)
T PF01580_consen   38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGSDLAPLA   87 (205)
T ss_dssp             S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSCCGGGT
T ss_pred             CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCccccchhh
Confidence            4479999999999999999988877542  35788999999966554443

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=94.65  E-value=0.025  Score=52.03  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=20.0

Q ss_pred             cceEEEEecCCCChhHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALV  624 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~  624 (741)
                      ...+.|+|||||||||+.+++.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            4679999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.64  E-value=0.023  Score=56.30  Aligned_cols=27  Identities=26%  Similarity=0.511  Sum_probs=23.1

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +...||.|-||+|+||||+++.|-.-+
T Consensus        35 ~aGECvvL~G~SG~GKStllr~LYaNY   61 (235)
T COG4778          35 NAGECVVLHGPSGSGKSTLLRSLYANY   61 (235)
T ss_pred             cCccEEEeeCCCCCcHHHHHHHHHhcc
Confidence            456689999999999999999987654

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=94.64  E-value=0.032  Score=59.70  Aligned_cols=29  Identities=24%  Similarity=0.574  Sum_probs=24.2

Q ss_pred             HhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        599 TMLTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       599 ~l~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .+..+++|+|+||+|||||++++.....+
T Consensus        29 l~~~~~pvLl~G~~GtGKT~li~~~l~~l   57 (272)
T PF12775_consen   29 LLSNGRPVLLVGPSGTGKTSLIQNFLSSL   57 (272)
T ss_dssp             HHHCTEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred             HHHcCCcEEEECCCCCchhHHHHhhhccC
Confidence            34679999999999999999998865543

>KOG0741|consensus

Probab=94.64  E-value=0.044  Score=62.45  Aligned_cols=32  Identities=25%  Similarity=0.525  Sum_probs=25.7

Q ss_pred             HHhhccc--eEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        598 ETMLTRH--STMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       598 e~l~~r~--gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +.+...|  |++|+||||+|||.+.+-+.+.++.
T Consensus       249 e~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNA  282 (744)
T KOG0741|consen  249 EQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNA  282 (744)
T ss_pred             HHcCccceeeEEEECCCCCChhHHHHHHHHHhcC
Confidence            3344444  9999999999999999998888764

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=94.62  E-value=0.024  Score=54.20  Aligned_cols=22  Identities=32%  Similarity=0.647  Sum_probs=20.2

Q ss_pred             EEEEecCCCChhHHHHHHHHHh
Q psy17620        606 TMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ++|+|||||||||+.+.|++.+
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            6899999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=94.60  E-value=0.039  Score=58.24  Aligned_cols=52  Identities=29%  Similarity=0.417  Sum_probs=36.9

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc-ccccccccc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA-VSVIELYGV  652 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka-~t~~eLyG~  652 (741)
                      ..-+.|-+.||||+||||++..|...+..-|.++-+..++|.+ .|-.-|.|.
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD   79 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD   79 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence            3456788999999999999999999998888899999999986 555677775

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=94.57  E-value=0.045  Score=55.21  Aligned_cols=28  Identities=32%  Similarity=0.574  Sum_probs=25.1

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      |.|.|||||||||+.+.|+..++..+.+
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~~~~~~   29 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILNKRGIP   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence            6799999999999999999999876654

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=94.56  E-value=0.032  Score=61.73  Aligned_cols=74  Identities=19%  Similarity=0.197  Sum_probs=45.9

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCC
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS  680 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~  680 (741)
                      ..-.++.|.||||||||.+.+.+++.++.          ++-.++..+|++.+=-++    .-.+-.+++.+..... .+
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~----------~~i~vsa~eL~sk~vGEs----Ek~IR~~F~~A~~~a~-~~  210 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGI----------EPIVMSAGELESENAGEP----GKLIRQRYREAADIIK-KK  210 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCC----------CeEEEEHHHhhcCcCCcH----HHHHHHHHHHHHHHhh-cc
Confidence            45568999999999999999999998742          233445566665552111    1234445554432110 12


Q ss_pred             CCCeEEEEc
Q psy17620        681 KERKYILFD  689 (741)
Q Consensus       681 ~~~~WIVfD  689 (741)
                      ..+.-|++|
T Consensus       211 ~aPcVLFID  219 (413)
T PLN00020        211 GKMSCLFIN  219 (413)
T ss_pred             CCCeEEEEe
Confidence            356888888

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=94.55  E-value=0.04  Score=54.74  Aligned_cols=37  Identities=27%  Similarity=0.460  Sum_probs=29.1

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      |.+.|+.||||||+.+.|++.+...|..+ ...-.|..
T Consensus         3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v-~~~~~~~~   39 (200)
T cd01672           3 IVFEGIDGAGKTTLIELLAERLEARGYEV-VLTREPGG   39 (200)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEeCCCC
Confidence            78999999999999999999997666554 33344554

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=94.52  E-value=0.058  Score=57.84  Aligned_cols=60  Identities=23%  Similarity=0.314  Sum_probs=49.9

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc-ccccccccc
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA-VSVIELYGV  652 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka-~t~~eLyG~  652 (741)
                      +..+|.....-|-|-+.|+||+||||++..|..-+..-|..|-+..|+|.+ .|-.-+.|.
T Consensus        41 l~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD  101 (323)
T COG1703          41 LRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD  101 (323)
T ss_pred             HHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence            344555556677899999999999999999999998889899999999988 455777775

>PRK14738 gmk guanylate kinase; Provisional

Probab=94.52  E-value=0.018  Score=58.91  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=22.1

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHH
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .....++|+|||||||||+++.|.+.
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            34567889999999999999999764

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.51  E-value=0.028  Score=61.42  Aligned_cols=124  Identities=15%  Similarity=0.265  Sum_probs=67.4

Q ss_pred             HHHHHhhcc--ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHh
Q psy17620        595 QMYETMLTR--HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAV  672 (741)
Q Consensus       595 qL~e~l~~r--~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~  672 (741)
                      .||+.+...  .||+|+||||+|||.+.|+.|...+.    ..+.++-      +||--.|=      -+|  ++++|++
T Consensus       175 ElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A----tFIrvvg------SElVqKYi------GEG--aRlVRel  236 (406)
T COG1222         175 ELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA----TFIRVVG------SELVQKYI------GEG--ARLVREL  236 (406)
T ss_pred             HHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc----eEEEecc------HHHHHHHh------ccc--hHHHHHH
Confidence            467776664  59999999999999999998876432    2222221      22221221      133  6777776


Q ss_pred             cCCCCCCCCCCeEEEEcCCCChhhhhhccccccCC----cee--eccCCCeeecCCCceEEEEeCCCCCCCCC
Q psy17620        673 NKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN----KIL--TLANGERIRLLAHCQLLFEIHPIQSDSHP  739 (741)
Q Consensus       673 ~~~~~~~~~~~~WIVfDG~vd~~wiE~LNsvLDdn----k~L--~L~nGeri~l~~~~rliFE~~~L~~aSPA  739 (741)
                      ..-..  .+.+..|.+| .+|+.=.-..++--...    ++|  -|+.-+=+.-..++++|+-|.-..-.=||
T Consensus       237 F~lAr--ekaPsIIFiD-EIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPA  306 (406)
T COG1222         237 FELAR--EKAPSIIFID-EIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPA  306 (406)
T ss_pred             HHHHh--hcCCeEEEEe-chhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChh
Confidence            43221  2456788888 44443222221110000    010  01112223446788899888877766666

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=94.49  E-value=0.061  Score=51.78  Aligned_cols=37  Identities=24%  Similarity=0.434  Sum_probs=28.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeE-EEEeCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPAR-TYTLNP  641 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~-~~~inp  641 (741)
                      .|+++|+++|||||+++.|.+.+...|..+- +....|
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~   39 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH   39 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence            4789999999999999999999887776554 444444

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=94.49  E-value=0.052  Score=60.86  Aligned_cols=123  Identities=17%  Similarity=0.179  Sum_probs=83.2

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC---CCCcccChH
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE---TRDWYDGLL  665 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~---t~eW~DGvl  665 (741)
                      +.|+-..-.....|++.|+||+||+.+-+.+...-.+.. ..-...+|..+++.    .+|||+---+   ..+=+-|+|
T Consensus        91 ~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~-~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glf  169 (403)
T COG1221          91 REQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRA-EAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLF  169 (403)
T ss_pred             HHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhccc-CCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchh
Confidence            334444445677999999999999999999985544421 12233444444443    4589863110   112234444


Q ss_pred             HHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        666 SNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       666 s~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                      .             ..+..-+.+|  |++.++--|.|=++||++-.-.+.+  .=+.+.++|+++-|+
T Consensus       170 e-------------~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~--~~~~~~dVRli~AT~  222 (403)
T COG1221         170 E-------------QANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGG--SQPRPVDVRLICATT  222 (403)
T ss_pred             e-------------ecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCC--CCCcCCCceeeeccc
Confidence            2             2355789999  8899999999999999987666744  667889999999876

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=94.48  E-value=0.23  Score=55.54  Aligned_cols=27  Identities=26%  Similarity=0.415  Sum_probs=23.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+-.++++|||||||||+++.|...+.
T Consensus       148 ~~GlilI~G~TGSGKTT~l~al~~~i~  174 (372)
T TIGR02525       148 AAGLGLICGETGSGKSTLAASIYQHCG  174 (372)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            445678999999999999999988774

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK00300 gmk guanylate kinase; Provisional

Probab=94.47  E-value=0.023  Score=57.41  Aligned_cols=28  Identities=29%  Similarity=0.545  Sum_probs=23.8

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....-+.|+|||||||||+.+.|++.+.
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            3456789999999999999999998753

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=94.47  E-value=0.034  Score=54.66  Aligned_cols=28  Identities=21%  Similarity=0.493  Sum_probs=19.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ..+.++|+|++|+|||++++.+...+..
T Consensus        23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~   50 (185)
T PF13191_consen   23 SPRNLLLTGESGSGKTSLLRALLDRLAE   50 (185)
T ss_dssp             ----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3567999999999999999988877654

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=94.44  E-value=0.09  Score=61.93  Aligned_cols=29  Identities=24%  Similarity=0.456  Sum_probs=25.9

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ...|..+++||+|+|||++.+.+++++..
T Consensus        36 ~~~hayLf~Gp~GtGKTt~Ak~lAkal~c   64 (559)
T PRK05563         36 KISHAYLFSGPRGTGKTSAAKIFAKAVNC   64 (559)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            45788999999999999999999999864

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=94.42  E-value=0.024  Score=60.58  Aligned_cols=38  Identities=16%  Similarity=0.214  Sum_probs=25.8

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS  645 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t  645 (741)
                      |+|+|-|||||||..+.|++.+...+.  .+++++-.++.
T Consensus         4 iil~G~P~SGKTt~a~~L~~~~~~~~~--~v~~i~~~~~~   41 (270)
T PF08433_consen    4 IILCGLPCSGKTTRAKELKKYLEEKGK--EVVIISDDSLG   41 (270)
T ss_dssp             EEEE--TTSSHHHHHHHHHHHHHHTT----EEEE-THHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhcCC--EEEEEcccccc
Confidence            789999999999999999999887443  44555544433

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=94.42  E-value=0.092  Score=62.65  Aligned_cols=28  Identities=25%  Similarity=0.479  Sum_probs=25.3

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ..|+++++||+|+|||++.+.|++++..
T Consensus        37 l~Ha~Lf~GP~GvGKTTlAriLAk~LnC   64 (709)
T PRK08691         37 LHHAYLLTGTRGVGKTTIARILAKSLNC   64 (709)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence            3589999999999999999999999764

>PRK14531 adenylate kinase; Provisional

Probab=94.41  E-value=0.033  Score=55.66  Aligned_cols=25  Identities=24%  Similarity=0.489  Sum_probs=22.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+++|||||||||+.+.|++.++
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g   27 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHG   27 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999999864

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=94.39  E-value=0.048  Score=61.33  Aligned_cols=26  Identities=23%  Similarity=0.592  Sum_probs=23.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..||+|+||||||||++.+.++..++
T Consensus       165 p~gvLL~GppGtGKT~lAkaia~~~~  190 (389)
T PRK03992        165 PKGVLLYGPPGTGKTLLAKAVAHETN  190 (389)
T ss_pred             CCceEEECCCCCChHHHHHHHHHHhC
Confidence            56899999999999999999998764

>PRK13949 shikimate kinase; Provisional

Probab=94.39  E-value=0.032  Score=55.27  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=22.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|+|+|++||||||+-+.|++.++
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~   26 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELG   26 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999999874

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=94.37  E-value=0.029  Score=58.14  Aligned_cols=23  Identities=30%  Similarity=0.419  Sum_probs=19.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALV  624 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~  624 (741)
                      ..+-++++|+||+||||+.+.|+
T Consensus        11 ~~~~~liyG~~G~GKtt~a~~~~   33 (220)
T TIGR01618        11 IPNMYLIYGKPGTGKTSTIKYLP   33 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcC
Confidence            34669999999999999988774

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=94.37  E-value=0.027  Score=54.40  Aligned_cols=22  Identities=36%  Similarity=0.729  Sum_probs=19.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|||+||+||||||+.+.|.+.
T Consensus         3 rimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCC
Confidence            5899999999999999998764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK14532 adenylate kinase; Provisional

Probab=94.34  E-value=0.031  Score=55.88  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|+++|||||||||+-+.|++.++
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g   25 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999998763

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=94.33  E-value=0.038  Score=60.86  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=28.0

Q ss_pred             HHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        596 MYETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |..++..+..++++|+|||||||+++.|...+.
T Consensus       153 L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip  185 (332)
T PRK13900        153 LEHAVISKKNIIISGGTSTGKTTFTNAALREIP  185 (332)
T ss_pred             HHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence            334566788999999999999999999988764

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=94.32  E-value=0.19  Score=60.68  Aligned_cols=120  Identities=18%  Similarity=0.265  Sum_probs=75.7

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCC-CCCc--ccChHHH
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPE-TRDW--YDGLLSN  667 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~-t~eW--~DGvls~  667 (741)
                      |+-.......+|+|.|++|||||.+.+.+......-+.  ....+|..+++    ..++||..... ++..  .-|.+  
T Consensus       391 ~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~--~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l--  466 (686)
T PRK15429        391 QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNR--RMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF--  466 (686)
T ss_pred             HHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCC--CeEEEecccCChhHhhhhhcCcccccccccccchhhHH--
Confidence            44445567789999999999999999998876543333  34445555544    35688864321 1111  11222  


Q ss_pred             HHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        668 IFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       668 i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                        ..         ..+--+++|  +.+++..-+.|-.+|++...-.+.+..  ..+.++|+|+-++
T Consensus       467 --e~---------a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~--~~~~~~RiI~~t~  519 (686)
T PRK15429        467 --EL---------ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK--IIQTDVRLIAATN  519 (686)
T ss_pred             --Hh---------cCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCC--cccceEEEEEeCC
Confidence              11         123468888  667888888888888887655554443  4456788888764

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=94.32  E-value=0.055  Score=60.19  Aligned_cols=26  Identities=23%  Similarity=0.592  Sum_probs=23.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..|++|+||||||||++.+.+++.+.
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~  181 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETN  181 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCC
Confidence            46899999999999999999998764

Many proteins may score above the trusted cutoff because an internal

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=94.32  E-value=0.03  Score=51.08  Aligned_cols=46  Identities=15%  Similarity=0.178  Sum_probs=32.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL  649 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eL  649 (741)
                      +++++.||||+|||+++-.++..+...+....+.++.|...-..+.
T Consensus         1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~   46 (144)
T cd00046           1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQV   46 (144)
T ss_pred             CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHH
Confidence            3689999999999999888887765443334556666666444433

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=94.30  E-value=0.046  Score=55.38  Aligned_cols=23  Identities=30%  Similarity=0.640  Sum_probs=17.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      -.+|.||||||||+++..+...+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            38999999999998777766666

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=94.30  E-value=0.034  Score=61.41  Aligned_cols=31  Identities=26%  Similarity=0.575  Sum_probs=26.6

Q ss_pred             HHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        598 ETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+...+..++++||+||||||+.+.|...+.
T Consensus       157 ~~v~~~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        157 ACVVGRLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             HHHHcCCeEEEECCCCccHHHHHHHHHcccC
Confidence            4456688899999999999999999988764

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=94.28  E-value=0.034  Score=50.85  Aligned_cols=80  Identities=18%  Similarity=0.248  Sum_probs=45.5

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc-cCC------CCe--EEEEeCCCccccccccccccCCC-CCcccChHHHHHHHhcCC
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST-VLG------YPA--RTYTLNPKAVSVIELYGVLNPET-RDWYDGLLSNIFRAVNKP  675 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~-~~~------~~~--~~~~inpka~t~~eLyG~~d~~t-~eW~DGvls~i~R~~~~~  675 (741)
                      |+|+|+||+||||+++.|.+.-. ..+      ...  ..+.++...+..-+.-|..++.. ..|.. .+..+++.. ..
T Consensus         2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~-~~~~~~~~~-~~   79 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGK-EIRKFLEQI-SK   79 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHH-HHHHHHHHH-CT
T ss_pred             EEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHH-HHHHHHHHH-HH
Confidence            78999999999999999996311 111      111  12234555555555556544321 11221 445566666 22


Q ss_pred             CCCCCCCCeEEEEcCCC
Q psy17620        676 LDPGSKERKYILFDGDV  692 (741)
Q Consensus       676 ~~~~~~~~~WIVfDG~v  692 (741)
                           .+--++|+|+.-
T Consensus        80 -----~d~ii~vv~~~~   91 (116)
T PF01926_consen   80 -----SDLIIYVVDASN   91 (116)
T ss_dssp             -----ESEEEEEEETTS
T ss_pred             -----CCEEEEEEECCC
Confidence                 245888899544

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK07667 uridine kinase; Provisional

Probab=94.26  E-value=0.068  Score=54.04  Aligned_cols=38  Identities=21%  Similarity=0.331  Sum_probs=30.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN  640 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~in  640 (741)
                      +--|.|.|++||||||+.+.|++.++..|.++.....+
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D   54 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID   54 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            44678999999999999999999998777666555444

>PRK05541 adenylylsulfate kinase; Provisional

Probab=94.25  E-value=0.042  Score=54.36  Aligned_cols=30  Identities=23%  Similarity=0.306  Sum_probs=25.3

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ++...-|+++|++||||||+.+.|++.+..
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~   33 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKL   33 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            344557899999999999999999998864

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.25  E-value=0.024  Score=62.62  Aligned_cols=23  Identities=22%  Similarity=0.575  Sum_probs=20.5

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +-|.|||||||||+++++|.--.
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe~   56 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFEQ   56 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            66999999999999999998643

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=94.22  E-value=0.034  Score=53.27  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.7

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ++++|+|||||||+.+.|++.++
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~   24 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLG   24 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcC
Confidence            68999999999999999998853

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=94.22  E-value=0.22  Score=49.75  Aligned_cols=28  Identities=32%  Similarity=0.466  Sum_probs=24.8

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|..++.||+|+|||++.+.+++.+.
T Consensus        12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~   39 (188)
T TIGR00678        12 RLAHAYLFAGPEGVGKELLALALAKALL   39 (188)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence            3457899999999999999999999874

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>KOG0743|consensus

Probab=94.22  E-value=0.036  Score=62.31  Aligned_cols=36  Identities=28%  Similarity=0.459  Sum_probs=29.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      ++|=+|+||||+|||+++-++|+-+     ...++.++-.+
T Consensus       235 KRGYLLYGPPGTGKSS~IaAmAn~L-----~ydIydLeLt~  270 (457)
T KOG0743|consen  235 KRGYLLYGPPGTGKSSFIAAMANYL-----NYDIYDLELTE  270 (457)
T ss_pred             hccceeeCCCCCCHHHHHHHHHhhc-----CCceEEeeecc
Confidence            6799999999999999999999987     35666665433

>TIGR03263 guanyl_kin guanylate kinase

Probab=94.21  E-value=0.029  Score=55.41  Aligned_cols=24  Identities=38%  Similarity=0.646  Sum_probs=21.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .-++|+||+||||||+.+.|++..
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccC
Confidence            357899999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK13768 GTPase; Provisional

Probab=94.21  E-value=0.058  Score=57.04  Aligned_cols=40  Identities=25%  Similarity=0.420  Sum_probs=35.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      ..+++.||+|+||||+...++.++...|.++.+..++|.+
T Consensus         3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~   42 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAV   42 (253)
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcc
Confidence            3688999999999999999999998888888888888865

>PRK06893 DNA replication initiation factor; Validated

Probab=94.20  E-value=0.047  Score=56.73  Aligned_cols=34  Identities=21%  Similarity=0.126  Sum_probs=26.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      +..++|+||||+|||.+.+.++..+...+.++.+
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y   72 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIY   72 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence            4467999999999999999999886544444433

>PF13479 AAA_24: AAA domain

Probab=94.19  E-value=0.094  Score=53.90  Aligned_cols=21  Identities=33%  Similarity=0.643  Sum_probs=18.3

Q ss_pred             cceEEEEecCCCChhHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINAL  623 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L  623 (741)
                      ..-++|+|+||+|||++...+
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC
Confidence            457899999999999987776

>PRK02496 adk adenylate kinase; Provisional

Probab=94.17  E-value=0.037  Score=55.13  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=21.2

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ++++|||||||||+.+.|++.++
T Consensus         4 i~i~G~pGsGKst~a~~la~~~~   26 (184)
T PRK02496          4 LIFLGPPGAGKGTQAVVLAEHLH   26 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999998864

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=94.16  E-value=0.057  Score=51.62  Aligned_cols=35  Identities=14%  Similarity=0.324  Sum_probs=29.3

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +|-+.+.....+.|.|+.|+||||+.+.+++++..
T Consensus        14 ~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        14 AFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            45555666778999999999999999999999753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=94.15  E-value=0.036  Score=55.26  Aligned_cols=23  Identities=30%  Similarity=0.590  Sum_probs=21.1

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|.|||||||||+.+.|++.++
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~   24 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG   24 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999863

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=94.14  E-value=0.71  Score=56.61  Aligned_cols=90  Identities=19%  Similarity=0.220  Sum_probs=51.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc-cccccccccccCCCCCc---ccChHHHHHHHhcCCCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA-VSVIELYGVLNPETRDW---YDGLLSNIFRAVNKPLDPG  679 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka-~t~~eLyG~~d~~t~eW---~DGvls~i~R~~~~~~~~~  679 (741)
                      ..++++||||+|||++.+.++++++.   +  ..+++-.. .+..++.|.-    +.|   ..|-+...++++..     
T Consensus       350 ~~i~l~GppG~GKTtl~~~ia~~l~~---~--~~~i~~~~~~d~~~i~g~~----~~~~g~~~G~~~~~l~~~~~-----  415 (784)
T PRK10787        350 PILCLVGPPGVGKTSLGQSIAKATGR---K--YVRMALGGVRDEAEIRGHR----RTYIGSMPGKLIQKMAKVGV-----  415 (784)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC---C--EEEEEcCCCCCHHHhccch----hccCCCCCcHHHHHHHhcCC-----
Confidence            36899999999999999999998742   2  33333222 2234454442    122   34555555554321     


Q ss_pred             CCCCeEEEEcCC--CChh----hhhhccccccCCce
Q psy17620        680 SKERKYILFDGD--VDAL----WIENMNSVMDDNKI  709 (741)
Q Consensus       680 ~~~~~WIVfDG~--vd~~----wiE~LNsvLDdnk~  709 (741)
                        .+.-|++|--  +.+.    -...|-.+||++.-
T Consensus       416 --~~~villDEidk~~~~~~g~~~~aLlevld~~~~  449 (784)
T PRK10787        416 --KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQN  449 (784)
T ss_pred             --CCCEEEEEChhhcccccCCCHHHHHHHHhccccE
Confidence              2346888821  1111    14566677776433

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=94.13  E-value=0.082  Score=60.79  Aligned_cols=121  Identities=17%  Similarity=0.271  Sum_probs=86.4

Q ss_pred             HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCCCCCcccChHHHHHHHhc
Q psy17620        598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPETRDWYDGLLSNIFRAVN  673 (741)
Q Consensus       598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~t~eW~DGvls~i~R~~~  673 (741)
                      ..-.+...|+|+|+||+||....+...++..+-+.|  ...||..|++.    +||||+-        .|.||=+-+...
T Consensus       263 r~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~P--FIaiNCaAiPe~LlESELFGye--------~GAFTGA~~~GK  332 (560)
T COG3829         263 RIAKTDSTVLILGESGTGKELFARAIHNLSPRANGP--FIAINCAAIPETLLESELFGYE--------KGAFTGASKGGK  332 (560)
T ss_pred             hhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCC--eEEEecccCCHHHHHHHHhCcC--------CccccccccCCC
Confidence            344567799999999999999999988876554333  56788888775    8999985        455555544211


Q ss_pred             CCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        674 KPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       674 ~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                      .-. -+-.++--|.+|  |+++...=--|-.||.+.....+.+-+.++.  .+|+|--|.
T Consensus       333 ~Gl-fE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~v--DVRIIAATN  389 (560)
T COG3829         333 PGL-FELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPV--DVRIIAATN  389 (560)
T ss_pred             Ccc-eeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceee--EEEEEeccC
Confidence            000 012244579999  9998877777888999999999987775554  688887664

>PRK09183 transposase/IS protein; Provisional

Probab=94.11  E-value=0.3  Score=51.92  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=28.1

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR  635 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~  635 (741)
                      +.....++|+||||+|||++...++......|..+.
T Consensus        99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~  134 (259)
T PRK09183         99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVR  134 (259)
T ss_pred             hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            455678999999999999999999876544454443

>PRK06851 hypothetical protein; Provisional

Probab=94.09  E-value=0.56  Score=52.32  Aligned_cols=46  Identities=20%  Similarity=0.432  Sum_probs=35.3

Q ss_pred             HHHHHHHh--hccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEE
Q psy17620        593 VVQMYETM--LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT  638 (741)
Q Consensus       593 v~qL~e~l--~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~  638 (741)
                      ...+++.+  ..++-++|.|+||+||||+++.++++....|..+.++.
T Consensus       202 ~~s~~~~l~~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~h  249 (367)
T PRK06851        202 AVDFVPSLTEGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYH  249 (367)
T ss_pred             HHhhHHhHhcccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence            44455444  34678999999999999999999998877777666554

>TIGR01817 nifA Nif-specific regulatory protein

Probab=94.07  E-value=0.098  Score=61.26  Aligned_cols=120  Identities=16%  Similarity=0.230  Sum_probs=73.7

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCCC-C--CcccChHHH
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPET-R--DWYDGLLSN  667 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~t-~--eW~DGvls~  667 (741)
                      ++........+|+|.|++||||+++.+.+......-+.  ....+|..+++.    .+|||+....- +  ..+-|.+. 
T Consensus       211 ~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~--pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~-  287 (534)
T TIGR01817       211 QARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKR--PFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFE-  287 (534)
T ss_pred             HHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCC--CeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCccc-
Confidence            34444467889999999999999999999987543332  355566655543    57788652110 0  01122211 


Q ss_pred             HHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        668 IFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       668 i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                                  ...+--++||  +.+++.--..|-.+|++...-.+.+..  ..+.++|+|+-++
T Consensus       288 ------------~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~--~~~~~~riI~~s~  339 (534)
T TIGR01817       288 ------------LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNR--TLKVDVRLVAATN  339 (534)
T ss_pred             ------------ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCc--eEeecEEEEEeCC
Confidence                        1233468888  456777677777788776554443333  4455788888653

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=94.07  E-value=0.04  Score=55.29  Aligned_cols=94  Identities=18%  Similarity=0.264  Sum_probs=49.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCe-EEEEeCCCccccccccc-----cccCCCCCc-ccChHHHHHHHhcCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPA-RTYTLNPKAVSVIELYG-----VLNPETRDW-YDGLLSNIFRAVNKPLD  677 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~-~~~~inpka~t~~eLyG-----~~d~~t~eW-~DGvls~i~R~~~~~~~  677 (741)
                      -|+|+|||||||||..+.|++.+.   .++ ..-.+...++....=.|     ++|.  ++| -|++...++++.-...+
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~---i~hlstgd~~r~~~~~~t~lg~~~k~~i~~--g~lv~d~i~~~~v~~rl~~~d   76 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG---LPHLDTGDILRAAIAERTELGEEIKKYIDK--GELVPDEIVNGLVKERLDEAD   76 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC---CcEEcHhHHhHhhhccCChHHHHHHHHHHc--CCccchHHHHHHHHHHHHhhc
Confidence            479999999999999999999853   221 11222222222222222     1332  344 44455566665433211


Q ss_pred             CCCCCCeEEEEcCCCChhhhhhccccccC
Q psy17620        678 PGSKERKYILFDGDVDALWIENMNSVMDD  706 (741)
Q Consensus       678 ~~~~~~~WIVfDG~vd~~wiE~LNsvLDd  706 (741)
                         ....+|.++=|-...-.+.+...|.+
T Consensus        77 ---~~~~~I~dg~PR~~~qa~~l~r~l~~  102 (178)
T COG0563          77 ---CKAGFILDGFPRTLCQARALKRLLKE  102 (178)
T ss_pred             ---ccCeEEEeCCCCcHHHHHHHHHHHHH
Confidence               11235544445555666666666544

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=94.06  E-value=0.04  Score=54.60  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=22.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-++|.|+|||||||+.+.|++.+.
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~   27 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLA   27 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhC
Confidence            4689999999999999999998864

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=94.06  E-value=0.064  Score=58.13  Aligned_cols=42  Identities=26%  Similarity=0.405  Sum_probs=35.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      ..+.|.++||+||||||++..|...+...|.++.+..++|.+
T Consensus        33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~   74 (300)
T TIGR00750        33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS   74 (300)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            466888999999999999999999987777777777777665

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=94.05  E-value=0.17  Score=53.73  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=26.6

Q ss_pred             HHHHHHHhhc----cceEEEEecCCCChhHHHHHHHHH
Q psy17620        593 VVQMYETMLT----RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       593 v~qL~e~l~~----r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +.++.+.+..    .+.|.|+|++|+|||++.+.++..
T Consensus         5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen    5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc
Confidence            4455555544    678889999999999999888766

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=94.03  E-value=0.076  Score=61.45  Aligned_cols=37  Identities=22%  Similarity=0.442  Sum_probs=29.7

Q ss_pred             HHHHHHHhhccce-EEEEecCCCChhHHHHHHHHHhcc
Q psy17620        593 VVQMYETMLTRHS-TMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       593 v~qL~e~l~~r~g-v~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +..|.+++..++| |+++||+||||||.+..+...+..
T Consensus       231 ~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~  268 (486)
T TIGR02533       231 LSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNT  268 (486)
T ss_pred             HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCC
Confidence            5567777777887 579999999999999987666643

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=94.02  E-value=0.055  Score=60.45  Aligned_cols=114  Identities=23%  Similarity=0.284  Sum_probs=0.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccC----CCCeEEEEeCC------------------------------Ccccccccc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVL----GYPARTYTLNP------------------------------KAVSVIELY  650 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~~~~inp------------------------------ka~t~~eLy  650 (741)
                      |++|-|+.|+||||+.+.|+..|-..    |.+..+..-+|                              -.-|.+.+.
T Consensus        40 gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvv  119 (423)
T COG1239          40 GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLV  119 (423)
T ss_pred             eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhc


Q ss_pred             ccccCCC------CCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCC
Q psy17620        651 GVLNPET------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLA  722 (741)
Q Consensus       651 G~~d~~t------~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~  722 (741)
                      |++|+..      ..++.|+|.++=|             -.+-+|  +.+|......|-.++-...--.=..|-.|..|-
T Consensus       120 GslDi~ka~~~g~~af~PGlLa~AnR-------------GIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa  186 (423)
T COG1239         120 GSLDIEKALEEGPKAFQPGLLARANR-------------GILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPA  186 (423)
T ss_pred             cccCHHHHHhcCccccCCcchhhccC-------------CEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCc


Q ss_pred             CceEEEEeC
Q psy17620        723 HCQLLFEIH  731 (741)
Q Consensus       723 ~~rliFE~~  731 (741)
                      ++=+|.-+.
T Consensus       187 ~fvligTmN  195 (423)
T COG1239         187 RFLLIGTMN  195 (423)
T ss_pred             cEEEEeecC

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=94.02  E-value=0.052  Score=63.20  Aligned_cols=35  Identities=26%  Similarity=0.531  Sum_probs=26.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      -.+|.|||||||||++++|++.++   ..+. ...||-.
T Consensus        47 iLlLtGP~G~GKtttv~~La~elg---~~v~-Ew~np~~   81 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKELG---FEVQ-EWINPVS   81 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC---CeeE-EecCCCC
Confidence            578899999999999999999874   3332 2356654

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=94.02  E-value=0.043  Score=51.89  Aligned_cols=23  Identities=43%  Similarity=0.580  Sum_probs=21.0

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |.|+|+|||||||+.+.|++.++
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~   24 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLG   24 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            68999999999999999998863

>KOG0745|consensus

Probab=94.01  E-value=0.059  Score=60.20  Aligned_cols=87  Identities=14%  Similarity=0.356  Sum_probs=59.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      ....|+|+||+|||||-+.++||+.++     |-+.+.+.-.+|-.-+-|.       =.+-++.+++..+.-+.+  +.
T Consensus       225 eKSNvLllGPtGsGKTllaqTLAr~ld-----VPfaIcDcTtLTQAGYVGe-------DVEsvi~KLl~~A~~nVe--kA  290 (564)
T KOG0745|consen  225 EKSNVLLLGPTGSGKTLLAQTLARVLD-----VPFAICDCTTLTQAGYVGE-------DVESVIQKLLQEAEYNVE--KA  290 (564)
T ss_pred             ecccEEEECCCCCchhHHHHHHHHHhC-----CCeEEecccchhhcccccc-------cHHHHHHHHHHHccCCHH--HH
Confidence            356899999999999999999999974     4455556566665544443       356788888887754432  33


Q ss_pred             CCeEEEEcCCCChhh--hhhcccc
Q psy17620        682 ERKYILFDGDVDALW--IENMNSV  703 (741)
Q Consensus       682 ~~~WIVfDG~vd~~w--iE~LNsv  703 (741)
                      .+-.+++| .+|-.-  .|.+|+.
T Consensus       291 QqGIVflD-EvDKi~~~~~~i~~~  313 (564)
T KOG0745|consen  291 QQGIVFLD-EVDKITKKAESIHTS  313 (564)
T ss_pred             hcCeEEEe-hhhhhcccCcccccc
Confidence            44567777 566543  5667665

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.00  E-value=0.034  Score=56.24  Aligned_cols=28  Identities=25%  Similarity=0.525  Sum_probs=24.2

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .....|+++|||||||||+++.++.-+.
T Consensus        29 a~ge~vv~lGpSGcGKTTLLnl~AGf~~   56 (259)
T COG4525          29 ASGELVVVLGPSGCGKTTLLNLIAGFVT   56 (259)
T ss_pred             cCCCEEEEEcCCCccHHHHHHHHhcCcC
Confidence            3566899999999999999999998764

>PRK13947 shikimate kinase; Provisional

Probab=94.00  E-value=0.042  Score=53.80  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=22.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|+|+|+|||||||+-+.|++.++
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg   26 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS   26 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999999874

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=93.97  E-value=0.063  Score=58.78  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=31.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP  641 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp  641 (741)
                      .+.++++||+|+||||++..|+..+...|.++.+...++
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~  152 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT  152 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence            457889999999999999999999876666666655555

>KOG0744|consensus

Probab=93.97  E-value=0.041  Score=59.42  Aligned_cols=28  Identities=25%  Similarity=0.431  Sum_probs=25.2

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..++-++|.||||+|||++.|.|++-++
T Consensus       175 t~NRliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  175 TWNRLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eeeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence            4578899999999999999999999875

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=93.96  E-value=0.098  Score=45.06  Aligned_cols=31  Identities=19%  Similarity=0.250  Sum_probs=25.7

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      +.+.|.+|+|||++...|+..+.+.|.++-.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~   32 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLL   32 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            5788999999999999999999876655433

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=93.95  E-value=0.042  Score=55.39  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=20.7

Q ss_pred             EEEEecCCCChhHHHHHHHHHh
Q psy17620        606 TMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      |.|.||+||||||+.+.|+..+
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6799999999999999999987

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=93.93  E-value=0.089  Score=54.02  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=19.6

Q ss_pred             EEEEecCCCChhHHHHHHHHHh
Q psy17620        606 TMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +++.|+||||||+.++.+....
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            4789999999999999998873

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=93.92  E-value=0.046  Score=54.59  Aligned_cols=26  Identities=35%  Similarity=0.700  Sum_probs=23.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ++.++|+||+|||||++.+.|.+...
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            56899999999999999999998764

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=93.92  E-value=0.046  Score=58.81  Aligned_cols=30  Identities=27%  Similarity=0.402  Sum_probs=26.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGY  632 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~  632 (741)
                      .+++++.||||||||++.+.+++.+..+|.
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~   87 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQILHRLGY   87 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            458999999999999999999998876653

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>KOG0733|consensus

Probab=93.91  E-value=0.039  Score=63.84  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=23.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -.||+|.||||||||.+.++++.-+.
T Consensus       223 prGvLlHGPPGCGKT~lA~AiAgel~  248 (802)
T KOG0733|consen  223 PRGVLLHGPPGCGKTSLANAIAGELG  248 (802)
T ss_pred             CCceeeeCCCCccHHHHHHHHhhhcC
Confidence            34999999999999999999998763

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.91  E-value=0.059  Score=58.12  Aligned_cols=59  Identities=19%  Similarity=0.385  Sum_probs=39.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAV  672 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~  672 (741)
                      ....|+|+||||||||-+.++|++.++     |....-+.-++|-.-+-|.       =.+-++.+++..+
T Consensus        96 ~KSNILLiGPTGsGKTlLAqTLAk~Ln-----VPFaiADATtLTEAGYVGE-------DVENillkLlqaa  154 (408)
T COG1219          96 SKSNILLIGPTGSGKTLLAQTLAKILN-----VPFAIADATTLTEAGYVGE-------DVENILLKLLQAA  154 (408)
T ss_pred             eeccEEEECCCCCcHHHHHHHHHHHhC-----CCeeeccccchhhccccch-------hHHHHHHHHHHHc
Confidence            456799999999999999999999984     3344445455554444443       2344555555544

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=93.91  E-value=0.054  Score=66.29  Aligned_cols=29  Identities=24%  Similarity=0.447  Sum_probs=26.2

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ...|..++.||+|+||||+.+.|++.+..
T Consensus        35 ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C   63 (824)
T PRK07764         35 RINHAYLFSGPRGCGKTSSARILARSLNC   63 (824)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence            45789999999999999999999999864

>PRK06696 uridine kinase; Validated

Probab=93.89  E-value=0.059  Score=55.66  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=26.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      ..-|.|.|+|||||||+.+.|++.+...|.++
T Consensus        22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v   53 (223)
T PRK06696         22 PLRVAIDGITASGKTTFADELAEEIKKRGRPV   53 (223)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            34678999999999999999999997655443

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=93.88  E-value=0.069  Score=51.73  Aligned_cols=26  Identities=31%  Similarity=0.424  Sum_probs=22.7

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      |+++|+|||||||+.+.|++.+...+
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g   27 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRG   27 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence            78999999999999999999885433

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=93.84  E-value=0.32  Score=55.32  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=30.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP  641 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp  641 (741)
                      ..|+++|++|+||||...-|+..+...|.++-+...+|
T Consensus       101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~  138 (429)
T TIGR01425       101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT  138 (429)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence            46899999999999999999998876676665555554

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=93.83  E-value=0.034  Score=52.21  Aligned_cols=26  Identities=38%  Similarity=0.584  Sum_probs=22.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+....
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CCEEEEEccCCCccccceeeeccccc
Confidence            45688999999999999999987754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0738|consensus

Probab=93.83  E-value=0.066  Score=59.13  Aligned_cols=24  Identities=29%  Similarity=0.655  Sum_probs=21.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -.||+++||||+|||.+.|+++.-
T Consensus       245 WkgvLm~GPPGTGKTlLAKAvATE  268 (491)
T KOG0738|consen  245 WKGVLMVGPPGTGKTLLAKAVATE  268 (491)
T ss_pred             cceeeeeCCCCCcHHHHHHHHHHh
Confidence            459999999999999999888754

>KOG0727|consensus

Probab=93.83  E-value=0.051  Score=56.74  Aligned_cols=33  Identities=21%  Similarity=0.562  Sum_probs=27.5

Q ss_pred             HHHHHhhc--cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        595 QMYETMLT--RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       595 qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +||+.+..  -+||+++||||||||.+.|..+...
T Consensus       179 ~ly~qigidpprgvllygppg~gktml~kava~~t  213 (408)
T KOG0727|consen  179 DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT  213 (408)
T ss_pred             HHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence            57777655  5699999999999999999988653

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=93.81  E-value=0.051  Score=57.65  Aligned_cols=34  Identities=32%  Similarity=0.521  Sum_probs=27.5

Q ss_pred             HHHhhccceEEEEecCCCChhHHHHHHHHHhccC
Q psy17620        597 YETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL  630 (741)
Q Consensus       597 ~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~  630 (741)
                      ...+..+..|++.||+||||||+++.|...+...
T Consensus       121 ~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~  154 (270)
T PF00437_consen  121 RSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE  154 (270)
T ss_dssp             HHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred             hhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence            3344567889999999999999999999876543

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=93.81  E-value=0.045  Score=49.93  Aligned_cols=23  Identities=39%  Similarity=0.514  Sum_probs=20.9

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |.|.||||+|||++.+.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999998865

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=93.81  E-value=0.064  Score=54.11  Aligned_cols=26  Identities=23%  Similarity=0.520  Sum_probs=22.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-++|+||||+||||++|.+.....
T Consensus        28 Gef~fl~GpSGAGKSTllkLi~~~e~   53 (223)
T COG2884          28 GEFVFLTGPSGAGKSTLLKLIYGEER   53 (223)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhhc
Confidence            44688999999999999999998754

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=93.81  E-value=0.046  Score=54.28  Aligned_cols=26  Identities=31%  Similarity=0.600  Sum_probs=23.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|+|+|++||||||+.+.|++.++
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~   29 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence            45699999999999999999998763

>PRK05480 uridine/cytidine kinase; Provisional

Probab=93.80  E-value=0.041  Score=56.04  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=22.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..-|.|+|+|||||||+.+.|++.+
T Consensus         6 ~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4467899999999999999999987

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.78  E-value=0.15  Score=56.75  Aligned_cols=27  Identities=22%  Similarity=0.441  Sum_probs=24.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      .|+++++||+|+|||++.+.+++.+..
T Consensus        39 ~~~~L~~G~~G~GKt~~a~~la~~l~~   65 (367)
T PRK14970         39 AQALLFCGPRGVGKTTCARILARKINQ   65 (367)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            468999999999999999999888754

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=93.77  E-value=0.074  Score=55.10  Aligned_cols=24  Identities=25%  Similarity=0.196  Sum_probs=21.7

Q ss_pred             EEEEecCCCChhHHHHHHHHHhcc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      |.|.||+||||||+.+.|+..+..
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~~   25 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLSR   25 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhh
Confidence            568999999999999999999864

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK00698 tmk thymidylate kinase; Validated

Probab=93.76  E-value=0.071  Score=53.64  Aligned_cols=30  Identities=30%  Similarity=0.258  Sum_probs=25.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      .-|.+.|+.||||||+.+.|++.+...|..
T Consensus         4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~   33 (205)
T PRK00698          4 MFITIEGIDGAGKSTQIELLKELLEQQGRD   33 (205)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence            468899999999999999999998765533

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=93.73  E-value=0.11  Score=51.28  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=27.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEE
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYT  638 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~  638 (741)
                      .+.++|++||||||+++.|...+...|.++-+..
T Consensus         3 vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK   36 (159)
T cd03116           3 VIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIK   36 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            5789999999999999999999877665554333

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=93.71  E-value=0.088  Score=51.09  Aligned_cols=38  Identities=29%  Similarity=0.485  Sum_probs=31.8

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      +.++|++||||||+.+.++..+...|.++.+...+|..
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~   39 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSS   39 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence            67899999999999999999988777777776667643

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=93.70  E-value=0.036  Score=58.66  Aligned_cols=27  Identities=33%  Similarity=0.493  Sum_probs=23.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ..-+-|+||.||||||++|++++.+..
T Consensus        28 G~i~~iiGpNG~GKSTLLk~l~g~l~p   54 (258)
T COG1120          28 GEITGILGPNGSGKSTLLKCLAGLLKP   54 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            456789999999999999999998763

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=93.67  E-value=0.053  Score=54.55  Aligned_cols=115  Identities=18%  Similarity=0.343  Sum_probs=57.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc-----cCCCCeEEEEe---CCCccccccccccccCCCCCcccChHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTL---NPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVN  673 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~-----~~~~~~~~~~i---npka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~  673 (741)
                      .+..|+|+||+|||||+++..|..-..     .+ .+...+.+   ..+.+..-++-|+--     -+..++..+.. ..
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~~~~~~~~~~lvD~PGH~r-----lr~~~~~~~~~-~~   74 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNVNNSKGKKLRLVDIPGHPR-----LRSKLLDELKY-LS   74 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCGSSTCGTCECEEEETT-HC-----CCHHHHHHHHH-HG
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEeecCCCCEEEEEECCCcHH-----HHHHHHHhhhc-hh
Confidence            367899999999999999999987521     11 11122222   233444455555532     22233333211 11


Q ss_pred             CCCCCCCCCCeEEEEcCCCCh----hhhhhccccccCCceeeccCCCeeecCCCceEE--EEeCCCCCCCCC
Q psy17620        674 KPLDPGSKERKYILFDGDVDA----LWIENMNSVMDDNKILTLANGERIRLLAHCQLL--FEIHPIQSDSHP  739 (741)
Q Consensus       674 ~~~~~~~~~~~WIVfDG~vd~----~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rli--FE~~~L~~aSPA  739 (741)
                            ....-..|.|+-.++    .-+|.|..||-+....          +..+.++  +-=+|+..|-|+
T Consensus        75 ------~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~----------~~~~piLIacNK~Dl~~A~~~  130 (181)
T PF09439_consen   75 ------NAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQ----------KNKPPILIACNKQDLFTAKPP  130 (181)
T ss_dssp             ------GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCC----------TT--EEEEEEE-TTSTT---H
T ss_pred             ------hCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhc----------cCCCCEEEEEeCccccccCCH
Confidence                  124578889987653    4788888887543211          2233343  334577777664

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=93.67  E-value=0.1  Score=52.95  Aligned_cols=88  Identities=18%  Similarity=0.311  Sum_probs=45.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHH--hccCCCCeEEEEeCCCccc-cccccccccCC-CCCcccChHHHHHHHhcCCCCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKT--STVLGYPARTYTLNPKAVS-VIELYGVLNPE-TRDWYDGLLSNIFRAVNKPLDPGS  680 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a--~~~~~~~~~~~~inpka~t-~~eLyG~~d~~-t~eW~DGvls~i~R~~~~~~~~~~  680 (741)
                      .++|.||.||||||+++++..+  +...|..+....  ...+. .+++|-.++.. +-...-+-|+.-+|+...... ..
T Consensus        30 ~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~--~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~-~~  106 (200)
T cd03280          30 VLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE--GSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARILQ-HA  106 (200)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc--cccCcCccEEEEecCchhhhhcCcchHHHHHHHHHHHHH-hC
Confidence            5999999999999999998832  223343222110  00111 23444333321 112222345555555422111 12


Q ss_pred             CCCeEEEEcCC---CChh
Q psy17620        681 KERKYILFDGD---VDAL  695 (741)
Q Consensus       681 ~~~~WIVfDG~---vd~~  695 (741)
                      ..++++++|-|   .|+.
T Consensus       107 ~~p~llllDEp~~glD~~  124 (200)
T cd03280         107 DPDSLVLLDELGSGTDPV  124 (200)
T ss_pred             CCCcEEEEcCCCCCCCHH
Confidence            36789999966   4554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=93.66  E-value=0.17  Score=57.71  Aligned_cols=121  Identities=18%  Similarity=0.292  Sum_probs=83.1

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCCCCCcccChHHHHHHHhcCC
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPETRDWYDGLLSNIFRAVNKP  675 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~t~eW~DGvls~i~R~~~~~  675 (741)
                      ..+...|+|.|+||+||..+.+++.....+-..|  ...+|..|++    -+||||+.        -|.||-++++=.-.
T Consensus       243 A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kP--fV~~NCAAlPesLlESELFGHe--------KGAFTGA~~~r~Gr  312 (550)
T COG3604         243 AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKP--FVKLNCAALPESLLESELFGHE--------KGAFTGAINTRRGR  312 (550)
T ss_pred             hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCC--ceeeeccccchHHHHHHHhccc--------ccccccchhccCcc
Confidence            3567899999999999999999988876554443  3445655555    48999996        46677666532110


Q ss_pred             CCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC-CCC
Q psy17620        676 LDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH-PIQ  734 (741)
Q Consensus       676 ~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~-~L~  734 (741)
                        -+-.+.--+.+|  |++....=--|-.||-+.-.=.+.+...|+.  .+|+|.-|. ||.
T Consensus       313 --FElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikV--DVRiIAATNRDL~  370 (550)
T COG3604         313 --FELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKV--DVRVIAATNRDLE  370 (550)
T ss_pred             --eeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEE--EEEEEeccchhHH
Confidence              012355678899  9998887777777777655555655555554  589998875 543

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.64  E-value=0.075  Score=61.28  Aligned_cols=27  Identities=33%  Similarity=0.602  Sum_probs=24.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      .|+++++||||+||||+.+.+++.+..
T Consensus        36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         36 SHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            467899999999999999999999754

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=93.63  E-value=0.077  Score=56.79  Aligned_cols=39  Identities=21%  Similarity=0.229  Sum_probs=32.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP  641 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp  641 (741)
                      .+.++++||+|+||||+...|+..+...|.++-+...++
T Consensus        72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~  110 (272)
T TIGR00064        72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT  110 (272)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            467889999999999999999988877676666666665

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR00235 udk uridine kinase

Probab=93.61  E-value=0.053  Score=55.29  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=21.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|.|+||+||||||+.+.|+..+.
T Consensus         7 ~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         7 IIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3567999999999999999998875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=93.61  E-value=0.1  Score=53.81  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=26.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      ...+++|+||+|+|||++.+.++......+.+
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~   72 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRN   72 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCc
Confidence            45689999999999999999999876443433

>PRK06547 hypothetical protein; Provisional

Probab=93.58  E-value=0.055  Score=53.93  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=21.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..-|+|.|++||||||+.+.|++.+
T Consensus        15 ~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         15 MITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3456777999999999999999885

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=93.58  E-value=0.18  Score=52.89  Aligned_cols=78  Identities=19%  Similarity=0.377  Sum_probs=48.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE  682 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~  682 (741)
                      -+.|+|.|+.|+|||+++|.+...+...|  .++.-+....+                  +-+..++..+..     .+.
T Consensus        52 annvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L------------------~~l~~l~~~l~~-----~~~  106 (249)
T PF05673_consen   52 ANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDL------------------GDLPELLDLLRD-----RPY  106 (249)
T ss_pred             CcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHh------------------ccHHHHHHHHhc-----CCC
Confidence            45688899999999999999999887655  33333332221                  124555555432     234


Q ss_pred             CeEEEEc----CCCChhhhhhccccccC
Q psy17620        683 RKYILFD----GDVDALWIENMNSVMDD  706 (741)
Q Consensus       683 ~~WIVfD----G~vd~~wiE~LNsvLDd  706 (741)
                      +-.|.+|    .+-|+.+ -.|-|+||.
T Consensus       107 kFIlf~DDLsFe~~d~~y-k~LKs~LeG  133 (249)
T PF05673_consen  107 KFILFCDDLSFEEGDTEY-KALKSVLEG  133 (249)
T ss_pred             CEEEEecCCCCCCCcHHH-HHHHHHhcC
Confidence            4566666    2224444 567788874

>KOG0733|consensus

Probab=93.57  E-value=0.069  Score=61.87  Aligned_cols=74  Identities=20%  Similarity=0.281  Sum_probs=45.2

Q ss_pred             HHHHhhc--cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhc
Q psy17620        596 MYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVN  673 (741)
Q Consensus       596 L~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~  673 (741)
                      +|+.+..  -.||+|+||||||||-+.|+.|+--.          +|--++.-.||+--|--        --.+++|+..
T Consensus       536 ~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag----------~NFisVKGPELlNkYVG--------ESErAVR~vF  597 (802)
T KOG0733|consen  536 LFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG----------ANFISVKGPELLNKYVG--------ESERAVRQVF  597 (802)
T ss_pred             HHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc----------CceEeecCHHHHHHHhh--------hHHHHHHHHH
Confidence            5666554  45999999999999999888776532          22234444556544422        1244555543


Q ss_pred             CCCCCCCCCCeEEEEc
Q psy17620        674 KPLDPGSKERKYILFD  689 (741)
Q Consensus       674 ~~~~~~~~~~~WIVfD  689 (741)
                      ....  ...+.-|.||
T Consensus       598 qRAR--~saPCVIFFD  611 (802)
T KOG0733|consen  598 QRAR--ASAPCVIFFD  611 (802)
T ss_pred             HHhh--cCCCeEEEec
Confidence            2211  2356899999

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=93.56  E-value=0.19  Score=58.27  Aligned_cols=106  Identities=21%  Similarity=0.246  Sum_probs=59.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccC--CCCeEEEEeCCCcccc-ccc--cccccCC--CCCcccChHHHHHHHhcC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVL--GYPARTYTLNPKAVSV-IEL--YGVLNPE--TRDWYDGLLSNIFRAVNK  674 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~--~~~~~~~~inpka~t~-~eL--yG~~d~~--t~eW~DGvls~i~R~~~~  674 (741)
                      ....++|+||+|+||||+...|+..+...  +.++.+...++.-+.. +++  ||.....  .....++-+..++++.. 
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-  427 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-  427 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-
Confidence            45678899999999999999998865443  2345555555433321 222  2221110  11133445666666542 


Q ss_pred             CCCCCCCCCeEEEEcCC----CChhhhhhcc---ccccCCceeeccCC
Q psy17620        675 PLDPGSKERKYILFDGD----VDALWIENMN---SVMDDNKILTLANG  715 (741)
Q Consensus       675 ~~~~~~~~~~WIVfDG~----vd~~wiE~LN---svLDdnk~L~L~nG  715 (741)
                             ...+|++|.+    -|...++.|.   ........|.++.+
T Consensus       428 -------~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAt  468 (559)
T PRK12727        428 -------DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPAN  468 (559)
T ss_pred             -------cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECC
Confidence                   3579999933    4555554442   22344556666543

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=93.55  E-value=0.1  Score=52.11  Aligned_cols=30  Identities=20%  Similarity=0.296  Sum_probs=24.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      -+.++|++||||||+++.|...+...|..+
T Consensus         8 ii~ivG~sgsGKTTLi~~li~~l~~~g~~v   37 (173)
T PRK10751          8 LLAIAAWSGTGKTTLLKKLIPALCARGIRP   37 (173)
T ss_pred             EEEEECCCCChHHHHHHHHHHHHhhcCCeE
Confidence            467999999999999999999887655443

>TIGR01351 adk adenylate kinases

Probab=93.55  E-value=0.053  Score=55.40  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.9

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|+|||||||||+.+.|++.++
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g   24 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYG   24 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999998764

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=93.53  E-value=0.083  Score=54.81  Aligned_cols=32  Identities=31%  Similarity=0.323  Sum_probs=26.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      ..-+.|.||+||||||+.+.|+..+...+..+
T Consensus        33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~   64 (229)
T PRK09270         33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELP   64 (229)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence            44678999999999999999999987655443

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=93.53  E-value=0.064  Score=54.47  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=26.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      ++.++|.||||||||++++.+.+++...|.++..
T Consensus        18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~   51 (196)
T PF13604_consen   18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIG   51 (196)
T ss_dssp             CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEE
T ss_pred             CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            3467788999999999999999988776544433

>PTZ00088 adenylate kinase 1; Provisional

Probab=93.49  E-value=0.056  Score=56.38  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=21.6

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|+|||||||||+-+.|++.++
T Consensus         9 Ivl~G~PGsGK~T~a~~La~~~g   31 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSKKEN   31 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999999874

>PRK14527 adenylate kinase; Provisional

Probab=93.47  E-value=0.058  Score=54.24  Aligned_cols=25  Identities=24%  Similarity=0.492  Sum_probs=22.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-++++|||||||||..+.|++.++
T Consensus         7 ~~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          7 KVVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3588999999999999999998764

>CHL00095 clpC Clp protease ATP binding subunit

Probab=93.46  E-value=0.21  Score=61.53  Aligned_cols=37  Identities=14%  Similarity=0.381  Sum_probs=30.7

Q ss_pred             HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +.++.+.+..  ..+++|+||||+|||++++.|+..+..
T Consensus       188 i~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~  226 (821)
T CHL00095        188 IERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVN  226 (821)
T ss_pred             HHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence            7777777744  458999999999999999999987643

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=93.46  E-value=0.094  Score=53.65  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=24.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ....++|+||+|+|||++.+.++.....
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~   64 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEE   64 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4568999999999999999999887643

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=93.44  E-value=0.058  Score=52.00  Aligned_cols=21  Identities=38%  Similarity=0.624  Sum_probs=19.4

Q ss_pred             EEecCCCChhHHHHHHHHHhc
Q psy17620        608 IVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       608 lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|||||||||+.+.|++.++
T Consensus         1 i~G~PgsGK~t~~~~la~~~~   21 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYG   21 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHT
T ss_pred             CcCCCCCChHHHHHHHHHhcC
Confidence            689999999999999999874

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=93.44  E-value=0.23  Score=54.64  Aligned_cols=30  Identities=23%  Similarity=0.342  Sum_probs=26.7

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      -...|+.++.||+|+||+++.+.+++++..
T Consensus        19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC   48 (328)
T PRK05707         19 GRHPHAYLLHGPAGIGKRALAERLAAALLC   48 (328)
T ss_pred             CCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence            456789999999999999999999999853

>PRK04040 adenylate kinase; Provisional

Probab=93.44  E-value=0.062  Score=54.27  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|+|+|||||||+.+.|++.+.
T Consensus         4 ~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          4 VVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhc
Confidence            478999999999999999999873

>PRK14737 gmk guanylate kinase; Provisional

Probab=93.42  E-value=0.056  Score=54.49  Aligned_cols=24  Identities=38%  Similarity=0.599  Sum_probs=21.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..++|+|||||||||+.+.|.+..
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            358999999999999999998764

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.41  E-value=0.052  Score=56.42  Aligned_cols=24  Identities=33%  Similarity=0.620  Sum_probs=21.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .-|.|+||+|+||||++|+|....
T Consensus        31 E~VaiIG~SGaGKSTLLR~lngl~   54 (258)
T COG3638          31 EMVAIIGPSGAGKSTLLRSLNGLV   54 (258)
T ss_pred             cEEEEECCCCCcHHHHHHHHhccc
Confidence            357899999999999999999854

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=93.41  E-value=0.086  Score=55.48  Aligned_cols=30  Identities=30%  Similarity=0.502  Sum_probs=23.9

Q ss_pred             Hhhccc-eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        599 TMLTRH-STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       599 ~l~~r~-gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+..+. .++|+||+|+||||+.+.+.+.+.
T Consensus        38 ~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        38 GLSQREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             HHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            334434 588999999999999999988765

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK10436 hypothetical protein; Provisional

Probab=93.39  E-value=0.42  Score=55.00  Aligned_cols=37  Identities=24%  Similarity=0.522  Sum_probs=28.1

Q ss_pred             HHHHHHHhhccce-EEEEecCCCChhHHHHHHHHHhcc
Q psy17620        593 VVQMYETMLTRHS-TMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       593 v~qL~e~l~~r~g-v~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +..+.+++...+| |++.|||||||||.+..+.+.+..
T Consensus       207 ~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~  244 (462)
T PRK10436        207 LAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNT  244 (462)
T ss_pred             HHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence            4556666766776 669999999999998777666654

>KOG0991|consensus

Probab=93.37  E-value=0.078  Score=54.96  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=23.0

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .+-..+++.||||+||||++.+|+..+
T Consensus        46 gnmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   46 GNMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence            334467899999999999999999885

>PRK14528 adenylate kinase; Provisional

Probab=93.37  E-value=0.063  Score=53.99  Aligned_cols=24  Identities=25%  Similarity=0.544  Sum_probs=21.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -+++.|||||||||+.+.|++.++
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~   26 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLS   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999998864

>PRK00625 shikimate kinase; Provisional

Probab=93.35  E-value=0.064  Score=53.52  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|+|+|.|||||||+-+.|++.++
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~   25 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS   25 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999998864

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=93.34  E-value=0.06  Score=53.47  Aligned_cols=106  Identities=19%  Similarity=0.296  Sum_probs=53.7

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCe-----------------EEEEeCCCccccccccccccCCCCCc---ccChH
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPA-----------------RTYTLNPKAVSVIELYGVLNPETRDW---YDGLL  665 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~-----------------~~~~inpka~t~~eLyG~~d~~t~eW---~DGvl  665 (741)
                      ++|.|+||+||||+++-+.+.+...+.++                 .+..+...   ....+...+. ....   +.++.
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g---~~~~la~~~~-~~~~~vgky~v~   77 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSG---EEAILARVDF-RSGPRVGKYFVD   77 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS----EEEEEETTS-S-SCECTTCEE-
T ss_pred             EEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCC---Cccccccccc-cccccCCCEEEc
Confidence            78999999999999999999885433221                 11122100   0111222220 0111   12233


Q ss_pred             HHHHHHhcCC-CCCCCCCCeEEEEc--CCC---ChhhhhhccccccCCcee--eccCC
Q psy17620        666 SNIFRAVNKP-LDPGSKERKYILFD--GDV---DALWIENMNSVMDDNKIL--TLANG  715 (741)
Q Consensus       666 s~i~R~~~~~-~~~~~~~~~WIVfD--G~v---d~~wiE~LNsvLDdnk~L--~L~nG  715 (741)
                      ...+-+.... .+.......+||+|  |++   .+.|.+.+..+||.++-+  +++..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~  135 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKR  135 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred             HHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecC
Confidence            3333332111 11000245799999  886   578999999999977543  44444

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK13764 ATPase; Provisional

Probab=93.33  E-value=0.1  Score=61.59  Aligned_cols=31  Identities=29%  Similarity=0.434  Sum_probs=26.7

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      ..+.+++++|||||||||+.+.|+..+...+
T Consensus       255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~  285 (602)
T PRK13764        255 ERAEGILIAGAPGAGKSTFAQALAEFYADMG  285 (602)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence            4578999999999999999999998876543

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=93.32  E-value=0.12  Score=50.64  Aligned_cols=29  Identities=41%  Similarity=0.670  Sum_probs=24.4

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      +.++|++||||||+++.|...+...|.++
T Consensus         2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V   30 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVKALKARGYRV   30 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            67899999999999999999987655443

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=93.31  E-value=0.059  Score=60.80  Aligned_cols=27  Identities=26%  Similarity=0.591  Sum_probs=23.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...||+|+||||||||++.+.++....
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~  204 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTT  204 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcC
Confidence            356999999999999999999998753

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=93.29  E-value=0.15  Score=55.92  Aligned_cols=28  Identities=14%  Similarity=0.168  Sum_probs=25.7

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|+.++.||+|+|||++.+.+++++.
T Consensus        19 r~~hA~Lf~G~~G~GK~~la~~~a~~ll   46 (325)
T PRK08699         19 RRPNAWLFAGKKGIGKTAFARFAAQALL   46 (325)
T ss_pred             CcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence            5678999999999999999999999974

>TIGR03689 pup_AAA proteasome ATPase

Probab=93.29  E-value=0.052  Score=62.92  Aligned_cols=27  Identities=22%  Similarity=0.555  Sum_probs=24.3

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|++|+||||||||++.+.+++.+.
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~  241 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLA  241 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence            457999999999999999999998874

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=93.27  E-value=0.25  Score=50.77  Aligned_cols=126  Identities=14%  Similarity=0.214  Sum_probs=45.3

Q ss_pred             HHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc---cccccccccccCCCCCcccChH-------
Q psy17620        596 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA---VSVIELYGVLNPETRDWYDGLL-------  665 (741)
Q Consensus       596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka---~t~~eLyG~~d~~t~eW~DGvl-------  665 (741)
                      ..+++....-|++.||+|||||.+.-..+..+-.-|.--++....|-.   -+..-|-|..+.....|-..+.       
T Consensus        12 ~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~   91 (205)
T PF02562_consen   12 ALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF   91 (205)
T ss_dssp             HHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS
T ss_pred             HHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            345555788999999999999988544443221113323344444433   2223344544333334533322       


Q ss_pred             -----HHHHHHhc------CCCCCCCCCCeEEEEcC--CCChh-hhhhccccccCCceeeccCCCeeecC
Q psy17620        666 -----SNIFRAVN------KPLDPGSKERKYILFDG--DVDAL-WIENMNSVMDDNKILTLANGERIRLL  721 (741)
Q Consensus       666 -----s~i~R~~~------~~~~~~~~~~~WIVfDG--~vd~~-wiE~LNsvLDdnk~L~L~nGeri~l~  721 (741)
                           ..++.+..      .-.++.+-++.+|++|-  .+.+. +-.-|..+=++.|++++.+-..+..|
T Consensus        92 ~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~~Q~D~~  161 (205)
T PF02562_consen   92 GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDPSQIDLP  161 (205)
T ss_dssp             -TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------
T ss_pred             ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCceeecCC
Confidence                 22221110      00123344678999993  34553 33333343345566666554444443

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=93.26  E-value=0.27  Score=53.59  Aligned_cols=86  Identities=21%  Similarity=0.349  Sum_probs=54.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      ...|++|.||+|+|||.+..+++..+...|.++.+..+       .+++-.+-   ..+.||-+...++.+.        
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~-------~~l~~~lk---~~~~~~~~~~~l~~l~--------  216 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF-------PEFIRELK---NSISDGSVKEKIDAVK--------  216 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH-------HHHHHHHH---HHHhcCcHHHHHHHhc--------
Confidence            35699999999999999999999998766666554433       12322221   1234554556666553        


Q ss_pred             CCeEEEEc--CCC-Chhhh--hhcccccc
Q psy17620        682 ERKYILFD--GDV-DALWI--ENMNSVMD  705 (741)
Q Consensus       682 ~~~WIVfD--G~v-d~~wi--E~LNsvLD  705 (741)
                      ....+|+|  |-- -..|.  |-|..+++
T Consensus       217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~  245 (306)
T PRK08939        217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQ  245 (306)
T ss_pred             CCCEEEEecCCCccccHHHHHHHHHHHHH
Confidence            34699999  432 23464  34566665

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=93.25  E-value=0.1  Score=57.27  Aligned_cols=26  Identities=27%  Similarity=0.556  Sum_probs=23.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|+.+++||+|+|||++.+.+++++.
T Consensus        36 ~~~~Ll~G~~G~GKt~~a~~la~~l~   61 (355)
T TIGR02397        36 AHAYLFSGPRGTGKTSIARIFAKALN   61 (355)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            47889999999999999999999974

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK06761 hypothetical protein; Provisional

Probab=93.25  E-value=0.082  Score=56.83  Aligned_cols=33  Identities=24%  Similarity=0.212  Sum_probs=27.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      +-+++.|+|||||||+.+.|++.+...|..+..
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~   36 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL   36 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence            468999999999999999999998765544443

>PF12846 AAA_10: AAA-like domain

Probab=93.22  E-value=0.094  Score=55.47  Aligned_cols=27  Identities=30%  Similarity=0.517  Sum_probs=22.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVL  630 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~  630 (741)
                      ..++++|+||||||++++.+...+-..
T Consensus         2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~   28 (304)
T PF12846_consen    2 PHTLILGKTGSGKTTLLKNLLEQLIRR   28 (304)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHc
Confidence            457889999999999999988765443

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=93.21  E-value=0.071  Score=53.07  Aligned_cols=25  Identities=32%  Similarity=0.473  Sum_probs=23.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..++|+|++|+||||+=+.|+++++
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~   27 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALN   27 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcC
Confidence            4689999999999999999999985

>CHL00181 cbbX CbbX; Provisional

Probab=93.21  E-value=0.069  Score=57.59  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=23.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      .+++.||||+|||++.+.+++.+..+|
T Consensus        61 ~ill~G~pGtGKT~lAr~la~~~~~~g   87 (287)
T CHL00181         61 HMSFTGSPGTGKTTVALKMADILYKLG   87 (287)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            489999999999999999999876554

>PRK00279 adk adenylate kinase; Reviewed

Probab=93.16  E-value=0.069  Score=54.78  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=21.3

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|.|||||||||+.+.|++.++
T Consensus         3 I~v~G~pGsGKsT~a~~la~~~~   25 (215)
T PRK00279          3 LILLGPPGAGKGTQAKFIAEKYG   25 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            88999999999999999998864

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.14  E-value=0.068  Score=54.86  Aligned_cols=26  Identities=31%  Similarity=0.644  Sum_probs=22.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .+...-+.|||||||||++++|....
T Consensus        32 ~~~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          32 KNKVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHhhc
Confidence            45677899999999999999988653

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=93.13  E-value=0.078  Score=52.79  Aligned_cols=104  Identities=16%  Similarity=0.196  Sum_probs=57.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKER  683 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~  683 (741)
                      -.++++||||+|||.+.+.|++.+.. +......++|-...+.     .-|.      +-.++..+........  ....
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~-----~~~~------~~~~~~l~~~~~~~v~--~~~~   69 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE-----GDDV------ESSVSKLLGSPPGYVG--AEEG   69 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS-----HHHC------SCHCHHHHHHTTCHHH--HHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc-----cchH------Hhhhhhhhhcccceee--ccch
Confidence            36889999999999999999999852 2233555555444443     0000      1112222221100000  0011


Q ss_pred             eEEEEcCC--CCh-----------hhhhhccccccCCceeeccCCCeeecCC
Q psy17620        684 KYILFDGD--VDA-----------LWIENMNSVMDDNKILTLANGERIRLLA  722 (741)
Q Consensus       684 ~WIVfDG~--vd~-----------~wiE~LNsvLDdnk~L~L~nGeri~l~~  722 (741)
                      --|+||--  +++           ..-..|-.+||+ ..++-..|..+.+.+
T Consensus        70 gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~-g~~~d~~g~~vd~~n  120 (171)
T PF07724_consen   70 GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG-GTLTDSYGRTVDTSN  120 (171)
T ss_dssp             TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH-SEEEETTCCEEEGTT
T ss_pred             hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc-cceecccceEEEeCC
Confidence            28888822  455           555566666775 466777887777654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=93.10  E-value=0.35  Score=57.14  Aligned_cols=37  Identities=22%  Similarity=0.433  Sum_probs=29.0

Q ss_pred             HHHHHHHhhccceE-EEEecCCCChhHHHHHHHHHhcc
Q psy17620        593 VVQMYETMLTRHST-MIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       593 v~qL~e~l~~r~gv-~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +..+.+++...+|+ +++|||||||||.+..+.+.++.
T Consensus       305 ~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~  342 (564)
T TIGR02538       305 KALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNT  342 (564)
T ss_pred             HHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCC
Confidence            55677777777775 69999999999999887777653

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=93.02  E-value=0.11  Score=58.53  Aligned_cols=26  Identities=31%  Similarity=0.608  Sum_probs=23.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .++|+|+||||+|||++.+.|++.++
T Consensus        47 p~~ILLiGppG~GKT~lAraLA~~l~   72 (441)
T TIGR00390        47 PKNILMIGPTGVGKTEIARRLAKLAN   72 (441)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999999874

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=93.02  E-value=0.11  Score=51.26  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=28.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      ..+.++|+|||||||+.+.|+..+...|.  .+..++...
T Consensus         5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~--~v~~id~D~   42 (175)
T PRK00889          5 VTVWFTGLSGAGKTTIARALAEKLREAGY--PVEVLDGDA   42 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEcCcc
Confidence            46789999999999999999998864433  334444443

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=93.01  E-value=0.1  Score=58.69  Aligned_cols=183  Identities=20%  Similarity=0.326  Sum_probs=104.5

Q ss_pred             cccccCCCCCceeccchhHHHHHHHHHHHcccCCCCCCCCHHHHHHHHHHhhhcCcceeeccc--ccCChhhHHHHHHHH
Q psy17620        368 GYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAGMDFLAFGKILSGLSQCGAWGCFDEF--NRIDVSVLSVISTQL  445 (741)
Q Consensus       368 gyEYlG~~~rLViTPLTdRc~~tl~~Al~~~~GGap~~~d~~~~~ri~~Glaq~GaW~cfDEf--nrl~~~vLSvva~qi  445 (741)
                      .++|++...+..-+ -.++.|--=|.++|++-|-.|-+-           --.-|.|-.-. +  .-++.+-|+-+|..|
T Consensus       127 ev~yl~p~~~~~~~-~ie~fFd~~TMSvHLKeg~~P~aK-----------~GkpG~~k~v~-l~d~pl~~~ele~ia~eI  193 (604)
T COG1855         127 EVEYLEPVEEPEEV-RIEEFFDEETMSVHLKEGVPPMAK-----------KGKPGEWKLVR-LSDKPLTREELEEIAREI  193 (604)
T ss_pred             eEEEeCCccchhhc-cHHHhcCCcceEEeeccCCCcccc-----------cCCCCcEEEEE-cCCccCCHHHHHHHHHHH
Confidence            35788885554444 567777777888888888777511           12335553320 0  012233344443332


Q ss_pred             HHHHHHHhhcCceeEee--cceEEecCCceEEEeccCCCCCCCCchHHHhhcceeeeccCCCHHHHHHHHHhhcCccchH
Q psy17620        446 LTIRTALLINATRFQFE--GHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAK  523 (741)
Q Consensus       446 ~~I~~al~~~~~~~~~~--g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRpvam~~PD~~~I~ei~L~s~GF~~a~  523 (741)
                        |..|-+...+.+.++  |.+|--..++.|-||--| +.-+-|+     ..-|||.-.                     
T Consensus       194 --i~~a~~~~~sfIEi~r~GatVvQlrn~RIvIarPP-fSd~~EI-----TavRPvvk~---------------------  244 (604)
T COG1855         194 --IERAKRDPDSFIEIDRPGATVVQLRNYRIVIARPP-FSDRWEI-----TAVRPVVKL---------------------  244 (604)
T ss_pred             --HHHHhhCcCceEEEccCCceEEEeccEEEEEecCC-CCCceEE-----EEEeeeEEe---------------------
Confidence              234555555556665  677766788999999866 3333333     123443310                     


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCccccchhhHHHHHHHhhHhHhhhccchHHHHHHHHHHhccCCCcchhhHHHHHHHhh-c
Q psy17620        524 VLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDVVQMYETML-T  602 (741)
Q Consensus       524 ~La~Kl~~l~~l~~e~ls~q~hydfgLRalksVL~~a~~l~~~~~~~~E~~~l~ral~~~~lPkl~~~Dv~qL~e~l~-~  602 (741)
                                        +-.+|  ||                    +|                      .|.+-|. .
T Consensus       245 ------------------~ledY--~L--------------------~d----------------------kl~eRL~er  262 (604)
T COG1855         245 ------------------SLEDY--GL--------------------SD----------------------KLKERLEER  262 (604)
T ss_pred             ------------------chhhc--CC--------------------CH----------------------HHHHHHHhh
Confidence                              00122  21                    11                      2223232 4


Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeE------EEEeCCCcccccccccccc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR------TYTLNPKAVSVIELYGVLN  654 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~------~~~inpka~t~~eLyG~~d  654 (741)
                      -.||++.||||+||||....|++-+...|.-++      --.+.|...-...|+|.+.
T Consensus       263 aeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsPRDl~v~~eITQYs~l~g~me  320 (604)
T COG1855         263 AEGILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESPRDLQVSPEITQYSPLEGDME  320 (604)
T ss_pred             hcceEEecCCCCChhHHHHHHHHHHHhcCcEEeeccCcccccCChhhhhcccccCchh
Confidence            679999999999999999999999988775332      2334455555577888764

>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase

Probab=92.99  E-value=0.14  Score=56.55  Aligned_cols=36  Identities=28%  Similarity=0.476  Sum_probs=28.6

Q ss_pred             HHH-HHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        593 VVQ-MYETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       593 v~q-L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.+ |..++..+..++++|++||||||+++.|...+.
T Consensus       167 ~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~  203 (340)
T TIGR03819       167 VARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVA  203 (340)
T ss_pred             HHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCC
Confidence            344 344556788999999999999999999887654

Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.

>PRK05439 pantothenate kinase; Provisional

Probab=92.96  E-value=0.2  Score=54.58  Aligned_cols=28  Identities=21%  Similarity=0.112  Sum_probs=24.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVL  630 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~  630 (741)
                      ..-|.|.|+|||||||+.+.|+..++..
T Consensus        86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~  113 (311)
T PRK05439         86 PFIIGIAGSVAVGKSTTARLLQALLSRW  113 (311)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            3357799999999999999999988754

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=92.92  E-value=0.11  Score=58.16  Aligned_cols=106  Identities=19%  Similarity=0.219  Sum_probs=58.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc-ccccccccccCC--C--CCcccChHHHHHHHhcCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-SVIELYGVLNPE--T--RDWYDGLLSNIFRAVNKPLD  677 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~-t~~eLyG~~d~~--t--~eW~DGvls~i~R~~~~~~~  677 (741)
                      ...|+|+||+|+||||.+..|+..+...|.++-+...+|.-+ ..++|-.+.+..  .  -.-.+.-+...++.+...  
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~--  318 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE--  318 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc--
Confidence            357889999999999999999988876566666666665432 223332211100  0  001223344555544321  


Q ss_pred             CCCCCCeEEEEcCC----CChhhhhhcccccc----CCceeecc
Q psy17620        678 PGSKERKYILFDGD----VDALWIENMNSVMD----DNKILTLA  713 (741)
Q Consensus       678 ~~~~~~~WIVfDG~----vd~~wiE~LNsvLD----dnk~L~L~  713 (741)
                         .....|+.|.+    -|..-++.|..+++    +...|+|+
T Consensus       319 ---~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLs  359 (436)
T PRK11889        319 ---ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLS  359 (436)
T ss_pred             ---cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEEC
Confidence               12468888843    23444555555543    34455554

>cd04159 Arl10_like Arl10-like subfamily

Probab=92.92  E-value=0.064  Score=50.45  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=19.0

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |.++|++|+||||+++.|...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            689999999999999998764

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>smart00072 GuKc Guanylate kinase homologues

Probab=92.89  E-value=0.081  Score=52.96  Aligned_cols=25  Identities=28%  Similarity=0.650  Sum_probs=22.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +..++|+|||||||+|+.+.|.+..
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcC
Confidence            3578999999999999999998874

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK06851 hypothetical protein; Provisional

Probab=92.87  E-value=0.13  Score=57.17  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=27.6

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      ..+.++|.|+||+||||+++.+.+++...|..+
T Consensus        29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~V   61 (367)
T PRK06851         29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDV   61 (367)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            466789999999999999999999987655443

>PRK12377 putative replication protein; Provisional

Probab=92.87  E-value=0.12  Score=54.60  Aligned_cols=34  Identities=18%  Similarity=0.186  Sum_probs=28.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      ..++++.||||+|||.+...++..+..-|..+.+
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~  134 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIV  134 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence            4689999999999999999999988765655543

>PLN02200 adenylate kinase family protein

Probab=92.86  E-value=0.08  Score=55.40  Aligned_cols=26  Identities=27%  Similarity=0.417  Sum_probs=22.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-++|+|+|||||||+.+.|++.++
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~~~g   68 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVETFG   68 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45689999999999999999998764

>PTZ00301 uridine kinase; Provisional

Probab=92.85  E-value=0.12  Score=53.23  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=21.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|.|.|+|||||||+.+.|++.+.
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~   28 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELM   28 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHH
Confidence            4578999999999999999987764

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=92.84  E-value=0.066  Score=52.25  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=17.8

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |.|.|++||||||+++.|++.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            789999999999999999977

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=92.83  E-value=0.21  Score=56.73  Aligned_cols=117  Identities=19%  Similarity=0.256  Sum_probs=73.0

Q ss_pred             HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCC-CC--CcccChHHHHHH
Q psy17620        598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPE-TR--DWYDGLLSNIFR  670 (741)
Q Consensus       598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~-t~--eW~DGvls~i~R  670 (741)
                      +......+|+|.|++|+||+++.+.+......-+.  ....+|..+++    ..+|||..... ++  .-..|.+.    
T Consensus       157 ~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~--~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~----  230 (445)
T TIGR02915       157 KIAPSDITVLLLGESGTGKEVLARALHQLSDRKDK--RFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIE----  230 (445)
T ss_pred             HHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCC--CeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCcee----
Confidence            44456789999999999999999998876543222  24566666654    35677764211 00  11122211    


Q ss_pred             HhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        671 AVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       671 ~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                               ...+--++||  +.+++..-..|-.+|.++..-.+...+  ..+.++|+|+-++
T Consensus       231 ---------~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~--~~~~~~rii~~~~  282 (445)
T TIGR02915       231 ---------YAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGRE--EIPVDVRIVCATN  282 (445)
T ss_pred             ---------ECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCc--eeeeceEEEEecC
Confidence                     1123457888  557888888888888877655544433  4556889988664

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=92.83  E-value=0.079  Score=53.23  Aligned_cols=24  Identities=33%  Similarity=0.631  Sum_probs=21.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .-++|.||||+||||+++.|.+..
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            347899999999999999999886

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=92.83  E-value=0.067  Score=54.47  Aligned_cols=27  Identities=30%  Similarity=0.589  Sum_probs=23.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.+.|+||+||||||++++++..+.
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            355688999999999999999998753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK06620 hypothetical protein; Validated

Probab=92.82  E-value=0.08  Score=54.61  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=20.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..++|+||||||||++.+++++..
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~   68 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLS   68 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhcc
Confidence            459999999999999999877654

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=92.81  E-value=0.13  Score=61.18  Aligned_cols=47  Identities=23%  Similarity=0.460  Sum_probs=35.3

Q ss_pred             hccCCCcchhh-------HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        582 DMNLPKFVSED-------VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       582 ~~~lPkl~~~D-------v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +..+|....++       +..|......++.++++||||+|||++.+.+++.+.
T Consensus        22 ~~~~~~~~~~~vigq~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~   75 (637)
T PRK13765         22 DIEVPERLIDQVIGQEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLP   75 (637)
T ss_pred             ecccCcccHHHcCChHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence            34455544444       334556667788999999999999999999998864

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=92.81  E-value=0.087  Score=52.62  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=22.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.++|++||||||+.+.|+..+.
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4588999999999999999998764

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases

Probab=92.81  E-value=0.22  Score=48.04  Aligned_cols=47  Identities=23%  Similarity=0.371  Sum_probs=29.9

Q ss_pred             HHHHhhccceEEEEecCCCChhHHHHHHHHH-hccCCCCeEEEEeCCCc
Q psy17620        596 MYETMLTRHSTMIVGPTGGGKSVVINALVKT-STVLGYPARTYTLNPKA  643 (741)
Q Consensus       596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a-~~~~~~~~~~~~inpka  643 (741)
                      .++.+...+.+++.||+|+|||.++-..+-. +.. +.+..+.++.|..
T Consensus         7 ~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~-~~~~~~lii~P~~   54 (169)
T PF00270_consen    7 AIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE-GKDARVLIIVPTR   54 (169)
T ss_dssp             HHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT-TSSSEEEEEESSH
T ss_pred             HHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc-CCCceEEEEeecc
Confidence            4455556677999999999999998754432 211 1223555566644

Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=92.78  E-value=0.069  Score=50.80  Aligned_cols=35  Identities=29%  Similarity=0.368  Sum_probs=29.0

Q ss_pred             HHHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        594 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       594 ~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|+.+....+.+|+|.|++||||+++.+.+.....
T Consensus        12 ~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~   46 (138)
T PF14532_consen   12 RQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG   46 (138)
T ss_dssp             HHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred             HHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence            36777778899999999999999999998887643

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=92.77  E-value=0.28  Score=59.79  Aligned_cols=37  Identities=16%  Similarity=0.363  Sum_probs=30.3

Q ss_pred             HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +.++.+.+..  ...++|+||||+|||++.+.|+..+..
T Consensus       191 i~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~  229 (731)
T TIGR02639       191 LERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAE  229 (731)
T ss_pred             HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            6677776654  458999999999999999999998643

>PRK06921 hypothetical protein; Provisional

Probab=92.77  E-value=0.32  Score=51.86  Aligned_cols=33  Identities=24%  Similarity=0.461  Sum_probs=27.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccC-CCCe
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPA  634 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~  634 (741)
                      ...+++++||||+|||.+...+++.+... |..+
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v  149 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPV  149 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceE
Confidence            46789999999999999999999887554 4443

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=92.74  E-value=0.15  Score=52.78  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=26.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEe
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL  639 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~i  639 (741)
                      .+++|.||+|+|||.+++.++..........++..+
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~   70 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL   70 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence            479999999999999999999887654333344333

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=92.70  E-value=0.13  Score=59.76  Aligned_cols=25  Identities=28%  Similarity=0.640  Sum_probs=22.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..|++|+||||||||++.+.++...
T Consensus        88 ~~giLL~GppGtGKT~la~alA~~~  112 (495)
T TIGR01241        88 PKGVLLVGPPGTGKTLLAKAVAGEA  112 (495)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHc
Confidence            4589999999999999999998764

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=92.70  E-value=0.39  Score=52.80  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=29.0

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +.++.-...|+.++.||+|+||+++.+.+++++..
T Consensus        16 ~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC   50 (325)
T PRK06871         16 QAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC   50 (325)
T ss_pred             HHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence            34444456899999999999999999999999853

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=92.67  E-value=0.085  Score=53.83  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=22.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      =|++.|+|||||||..+-|+++++.
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~   27 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQ   27 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHH
Confidence            3789999999999999999999874

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=92.66  E-value=0.15  Score=48.17  Aligned_cols=35  Identities=14%  Similarity=0.389  Sum_probs=29.5

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      .|-+.+.....|+|.|+-|+||||..|.++++++.
T Consensus         7 ~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen    7 KLAQILKPGDVILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             HHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             HHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            45677788889999999999999999999999853

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>KOG0054|consensus

Probab=92.66  E-value=0.17  Score=64.59  Aligned_cols=124  Identities=23%  Similarity=0.344  Sum_probs=76.8

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccc--------------ccc----ccCCCCCcc
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL--------------YGV----LNPETRDWY  661 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eL--------------yG~----~d~~t~eW~  661 (741)
                      .+-+.-|-|||.|||||||++.+|-+-....+..+.+--+|-..+...+|              =|.    +||- .+++
T Consensus      1163 I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf-~e~s 1241 (1381)
T KOG0054|consen 1163 IKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF-DEYS 1241 (1381)
T ss_pred             EcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc-cccC
Confidence            34456688999999999999999988765433233332233333333332              122    4663 5777


Q ss_pred             cChHHHHHHHhcC-----CC---------C-CCC----------------CCCeEEEEc---CCCChh------------
Q psy17620        662 DGLLSNIFRAVNK-----PL---------D-PGS----------------KERKYILFD---GDVDAL------------  695 (741)
Q Consensus       662 DGvls~i~R~~~~-----~~---------~-~~~----------------~~~~WIVfD---G~vd~~------------  695 (741)
                      |.-+=.++.++.-     ..         + |++                .+.|.+|+|   -.||+.            
T Consensus      1242 D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~ 1321 (1381)
T KOG0054|consen 1242 DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE 1321 (1381)
T ss_pred             HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH
Confidence            7655444444310     00         1 111                357999999   346643            


Q ss_pred             --------hhhhccccccCCceeeccCCCeeecCCCc
Q psy17620        696 --------WIENMNSVMDDNKILTLANGERIRLLAHC  724 (741)
Q Consensus       696 --------wiE~LNsvLDdnk~L~L~nGeri~l~~~~  724 (741)
                              -...||||+|-.|+|.|.+|+.......-
T Consensus      1322 F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1322 FKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPA 1358 (1381)
T ss_pred             hcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChH
Confidence                    34678999999999999999988765443

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=92.65  E-value=0.085  Score=54.57  Aligned_cols=28  Identities=25%  Similarity=0.340  Sum_probs=24.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ....+.|+||+||||||++++|+..+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~   57 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLERP   57 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4567889999999999999999987643

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08727 hypothetical protein; Validated

Probab=92.64  E-value=0.14  Score=53.49  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=26.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      ...++|+||+|+|||.+.+.++.+....|.++.+
T Consensus        41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y   74 (233)
T PRK08727         41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAY   74 (233)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence            4579999999999999999998876554544433

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=92.64  E-value=0.091  Score=51.18  Aligned_cols=23  Identities=35%  Similarity=0.559  Sum_probs=21.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      -|+|.|++||||||+.+.|++.+
T Consensus         2 iI~i~G~~GSGKstia~~la~~l   24 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            47899999999999999999875

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>KOG1970|consensus

Probab=92.61  E-value=0.14  Score=58.94  Aligned_cols=44  Identities=27%  Similarity=0.317  Sum_probs=31.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV  652 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~  652 (741)
                      -.+|.||+||||||.+++|++.++   .+ ...-+||-.....+..+.
T Consensus       112 iLLltGPsGcGKSTtvkvLskelg---~~-~~Ew~Npi~~~~~~~~h~  155 (634)
T KOG1970|consen  112 ILLLTGPSGCGKSTTVKVLSKELG---YQ-LIEWSNPINLKEPENLHN  155 (634)
T ss_pred             EEEEeCCCCCCchhHHHHHHHhhC---ce-eeeecCCccccccccccc
Confidence            566899999999999999999874   22 234566666554444443

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=92.57  E-value=0.089  Score=60.02  Aligned_cols=27  Identities=22%  Similarity=0.582  Sum_probs=23.7

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...||+|+||||||||++.+.++..+.
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~  242 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETS  242 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            356899999999999999999998753

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=92.57  E-value=0.081  Score=52.95  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.2

Q ss_pred             cceEEEEecCCCChhHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALV  624 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~  624 (741)
                      ..-+.|+||+||||||+++++.
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4467899999999999999985

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK13975 thymidylate kinase; Provisional

Probab=92.55  E-value=0.097  Score=52.46  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=22.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|++.|++||||||+.+.|++.+.
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3588999999999999999999985

>PRK14974 cell division protein FtsY; Provisional

Probab=92.54  E-value=0.12  Score=56.99  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=27.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      ...++++||+|+||||.+..|+..+...|.++-+
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~l  173 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVI  173 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            3578899999999999999999988766554444

>cd04155 Arl3 Arl3 subfamily

Probab=92.53  E-value=0.08  Score=51.43  Aligned_cols=24  Identities=21%  Similarity=0.476  Sum_probs=21.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +.-|+++|++|+||||+++.+...
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC
Confidence            456999999999999999999864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PLN02796 D-glycerate 3-kinase

Probab=92.51  E-value=0.15  Score=56.15  Aligned_cols=28  Identities=32%  Similarity=0.376  Sum_probs=23.9

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      |-|+|++||||||+.+.|...+...+..
T Consensus       103 IGI~G~sGSGKSTLa~~L~~lL~~~g~~  130 (347)
T PLN02796        103 IGISAPQGCGKTTLVFALVYLFNATGRR  130 (347)
T ss_pred             EEEECCCCCcHHHHHHHHHHHhcccCCc
Confidence            7899999999999999999998654433

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=92.49  E-value=0.088  Score=56.56  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .-|+++|+|||||||+.+.|++.+
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHC
Confidence            458899999999999999999886

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=92.49  E-value=0.084  Score=54.20  Aligned_cols=27  Identities=19%  Similarity=0.283  Sum_probs=23.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++....
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            355788999999999999999998653

>KOG2228|consensus

Probab=92.47  E-value=0.19  Score=54.76  Aligned_cols=46  Identities=24%  Similarity=0.335  Sum_probs=36.8

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS  645 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t  645 (741)
                      +...+.|+++||.|||||.++..-..-....|.+.-...+||.-.+
T Consensus        46 ~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~   91 (408)
T KOG2228|consen   46 HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQT   91 (408)
T ss_pred             hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchh
Confidence            4557899999999999999987754444556777888899998777

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=92.47  E-value=0.078  Score=54.22  Aligned_cols=27  Identities=37%  Similarity=0.548  Sum_probs=23.3

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++..+.
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            355788999999999999999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=92.47  E-value=0.088  Score=52.19  Aligned_cols=26  Identities=27%  Similarity=0.470  Sum_probs=22.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|.||+||||||+.|.++...+
T Consensus        29 Ge~iaitGPSG~GKStllk~va~Lis   54 (223)
T COG4619          29 GEFIAITGPSGCGKSTLLKIVASLIS   54 (223)
T ss_pred             CceEEEeCCCCccHHHHHHHHHhccC
Confidence            34578999999999999999997654

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=92.46  E-value=0.13  Score=58.58  Aligned_cols=39  Identities=21%  Similarity=0.306  Sum_probs=31.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP  641 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp  641 (741)
                      ...|+++|++|+||||+...|+..+...|.++.+...++
T Consensus        95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~  133 (437)
T PRK00771         95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT  133 (437)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence            457899999999999999999998877666666555554

>KOG0055|consensus

Probab=92.46  E-value=0.092  Score=65.60  Aligned_cols=33  Identities=30%  Similarity=0.474  Sum_probs=28.4

Q ss_pred             HhhccceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        599 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       599 ~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      .....+.|-||||+||||||++..|.+-+...+
T Consensus      1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence            345678999999999999999999999987653

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=92.40  E-value=0.15  Score=57.38  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=29.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhcc----CCCCeEEEEeCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTV----LGYPARTYTLNP  641 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~----~~~~~~~~~inp  641 (741)
                      ..|+++||+|+||||.+.-|+..+..    -|.++.+..+++
T Consensus       175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt  216 (388)
T PRK12723        175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN  216 (388)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence            47889999999999999999987653    245666666665

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=92.40  E-value=0.11  Score=50.94  Aligned_cols=25  Identities=32%  Similarity=0.438  Sum_probs=22.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.++|+|++||||||+-+.|++.++
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg   27 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALG   27 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999999874

>PRK14526 adenylate kinase; Provisional

Probab=92.38  E-value=0.1  Score=53.76  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=20.9

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ++|+|||||||||..+.|++.++
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~   25 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELN   25 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999998764

>PRK13946 shikimate kinase; Provisional

Probab=92.35  E-value=0.11  Score=52.03  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=23.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|+|+|.+||||||+-+.|++.++
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg   35 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLG   35 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            45799999999999999999999874

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.34  E-value=0.11  Score=61.69  Aligned_cols=29  Identities=24%  Similarity=0.394  Sum_probs=25.9

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ...|+++++||+|+||||+.+.+++++..
T Consensus        35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC   63 (702)
T PRK14960         35 RLHHAYLFTGTRGVGKTTIARILAKCLNC   63 (702)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34689999999999999999999999864

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=92.34  E-value=0.081  Score=55.03  Aligned_cols=27  Identities=26%  Similarity=0.546  Sum_probs=23.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            455788999999999999999997653

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK01184 hypothetical protein; Provisional

Probab=92.31  E-value=0.1  Score=51.97  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=17.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+|+|||||||||+-+ +++.
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~~~   23 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IARE   23 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            47899999999999876 4443

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=92.31  E-value=0.1  Score=50.18  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+++|++|+||||+++.+...
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999998753

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=92.31  E-value=0.092  Score=53.45  Aligned_cols=24  Identities=25%  Similarity=0.545  Sum_probs=21.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -+.|+||+||||||++++++..+.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=92.31  E-value=0.16  Score=56.76  Aligned_cols=100  Identities=13%  Similarity=0.038  Sum_probs=59.3

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc-ccc--cccccCCC--CCcccChHHHHHHHhcCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV-IEL--YGVLNPET--RDWYDGLLSNIFRAVNKPL  676 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~-~eL--yG~~d~~t--~eW~DGvls~i~R~~~~~~  676 (741)
                      ....++++||+|+||||++..|+..+...|.++-+...+|--... ++|  |+......  ..-...-+..+++.+..  
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~--  282 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY--  282 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh--
Confidence            356789999999999999999998775556666666676653311 122  22211100  00011223444444421  


Q ss_pred             CCCCCCCeEEEEcCC----CChhhhhhccccccC
Q psy17620        677 DPGSKERKYILFDGD----VDALWIENMNSVMDD  706 (741)
Q Consensus       677 ~~~~~~~~WIVfDG~----vd~~wiE~LNsvLDd  706 (741)
                         ......|+.|.+    .|..+++-|..+++.
T Consensus       283 ---~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~  313 (407)
T PRK12726        283 ---VNCVDHILIDTVGRNYLAEESVSEISAYTDV  313 (407)
T ss_pred             ---cCCCCEEEEECCCCCccCHHHHHHHHHHhhc
Confidence               123579999933    578888888776653

>cd00154 Rab Rab family

Probab=92.30  E-value=0.1  Score=48.98  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|++|+||||+++.+...
T Consensus         3 i~~~G~~~~GKStl~~~l~~~   23 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVDG   23 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998755

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00876 Ras Ras family

Probab=92.29  E-value=0.097  Score=49.61  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=18.9

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|++|+|||++++.+...
T Consensus         2 i~i~G~~~~GKTsli~~l~~~   22 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKG   22 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998754

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK08356 hypothetical protein; Provisional

Probab=92.29  E-value=0.1  Score=52.78  Aligned_cols=21  Identities=24%  Similarity=0.339  Sum_probs=18.6

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      -++|+|||||||||+.+.|.+
T Consensus         7 ~i~~~G~~gsGK~t~a~~l~~   27 (195)
T PRK08356          7 IVGVVGKIAAGKTTVAKFFEE   27 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477999999999999999953

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.27  E-value=0.25  Score=57.54  Aligned_cols=27  Identities=22%  Similarity=0.439  Sum_probs=24.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      .|.++++||||+||||+.+.+++++..
T Consensus        36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         36 GHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            477899999999999999999999864

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=92.26  E-value=0.1  Score=49.58  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+++|++|+||||+++.+...
T Consensus         3 ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           3 KLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998753

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=92.26  E-value=0.46  Score=57.78  Aligned_cols=99  Identities=14%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc---ccccccccCCC----CCcccChHHHHHHHhc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPET----RDWYDGLLSNIFRAVN  673 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~---~eLyG~~d~~t----~eW~DGvls~i~R~~~  673 (741)
                      ..+.-++|.|+||+||||+++.+.+++...+....+....|..-..   .+.-|. ...|    ..|..+-..  .+  +
T Consensus       336 ~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~-~a~Tih~lL~~~~~~~~--~~--~  410 (720)
T TIGR01448       336 IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGL-TASTIHRLLGYGPDTFR--HN--H  410 (720)
T ss_pred             HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCC-ccccHHHHhhccCCccc--hh--h
Confidence            3456788999999999999999999887765223444455542221   222221 1111    011111000  00  0


Q ss_pred             CCCCCCCCCCeEEEEc--CCCChhhhhhccccccCC
Q psy17620        674 KPLDPGSKERKYILFD--GDVDALWIENMNSVMDDN  707 (741)
Q Consensus       674 ~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdn  707 (741)
                      .   ........+|.|  +-+|......|-+.+.++
T Consensus       411 ~---~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~  443 (720)
T TIGR01448       411 L---EDPIDCDLLIVDESSMMDTWLALSLLAALPDH  443 (720)
T ss_pred             h---hccccCCEEEEeccccCCHHHHHHHHHhCCCC
Confidence            0   012345799999  778887777765555433

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=92.25  E-value=0.11  Score=51.23  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=21.0

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |-+-|||||||||+-+.|++.++
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~g   25 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLG   25 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhC
Confidence            66889999999999999999874

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=92.25  E-value=0.14  Score=55.26  Aligned_cols=28  Identities=21%  Similarity=0.117  Sum_probs=23.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVL  630 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~  630 (741)
                      ..-|.|.||+||||||+.+.|...+...
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~~~   89 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLSRW   89 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            3456799999999999999999888644

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=92.25  E-value=0.085  Score=53.90  Aligned_cols=27  Identities=22%  Similarity=0.466  Sum_probs=23.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345678999999999999999998754

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=92.24  E-value=0.087  Score=53.41  Aligned_cols=27  Identities=19%  Similarity=0.318  Sum_probs=23.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...-+.|+||+||||||++++++..+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345688999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK04182 cytidylate kinase; Provisional

Probab=92.23  E-value=0.11  Score=51.02  Aligned_cols=24  Identities=33%  Similarity=0.508  Sum_probs=21.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|.|.|++||||||+-+.|++.++
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg   25 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLG   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999998863

>PRK07952 DNA replication protein DnaC; Validated

Probab=92.19  E-value=0.16  Score=53.57  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=27.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPAR  635 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~  635 (741)
                      .+++|.|+||+|||.+...++..+...|.++.
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~  131 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVL  131 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            58999999999999999999998876555543

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=92.18  E-value=0.084  Score=52.88  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=23.8

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .....+.|+||+||||||++++++..+.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            3456788999999999999999998754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14529 adenylate kinase; Provisional

Probab=92.18  E-value=0.11  Score=53.91  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|+|||||||||..+.|++.++
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~   25 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYD   25 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999999875

>smart00175 RAB Rab subfamily of small GTPases

Probab=92.18  E-value=0.097  Score=50.02  Aligned_cols=21  Identities=24%  Similarity=0.569  Sum_probs=19.2

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|++|+||||+++.+...
T Consensus         3 v~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999998755

Rab GTPases are implicated in vesicle trafficking.

>cd04163 Era Era subfamily

Probab=92.16  E-value=0.1  Score=49.31  Aligned_cols=23  Identities=43%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|.++|++|+||||+++.+.+.
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            45889999999999999998653

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=92.14  E-value=0.089  Score=56.59  Aligned_cols=24  Identities=38%  Similarity=0.657  Sum_probs=21.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +-.+||+|++|+||||.+++|..+
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~   27 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNS   27 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhc
Confidence            447999999999999999999876

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=92.14  E-value=0.091  Score=53.16  Aligned_cols=27  Identities=26%  Similarity=0.414  Sum_probs=23.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345688999999999999999998764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=92.13  E-value=0.091  Score=53.56  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=23.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++..+.
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999998754

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=92.12  E-value=0.1  Score=53.10  Aligned_cols=27  Identities=22%  Similarity=0.410  Sum_probs=22.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345678999999999999999998653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.11  E-value=0.13  Score=59.06  Aligned_cols=27  Identities=30%  Similarity=0.540  Sum_probs=24.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      .|..+++||+|+||||+.+.+++++..
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnc   66 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNC   66 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            567999999999999999999999864

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=92.10  E-value=0.096  Score=53.61  Aligned_cols=27  Identities=15%  Similarity=0.396  Sum_probs=23.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999987754

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=92.08  E-value=0.17  Score=49.71  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=26.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPAR  635 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~  635 (741)
                      ..|.+.|.|||||||+-+.|.+.+...|.++.
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~   34 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLFARGIKVY   34 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence            35789999999999999999999987765543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK13342 recombination factor protein RarA; Reviewed

Probab=92.08  E-value=0.13  Score=58.15  Aligned_cols=24  Identities=25%  Similarity=0.551  Sum_probs=21.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +.++|+||||+||||+.+.+++..
T Consensus        37 ~~ilL~GppGtGKTtLA~~ia~~~   60 (413)
T PRK13342         37 SSMILWGPPGTGKTTLARIIAGAT   60 (413)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998875

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=92.07  E-value=0.093  Score=53.50  Aligned_cols=27  Identities=19%  Similarity=0.434  Sum_probs=23.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999998653

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=92.06  E-value=0.31  Score=53.00  Aligned_cols=28  Identities=29%  Similarity=0.402  Sum_probs=25.2

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|..+++||.|+|||++.+.+++++.
T Consensus        24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~   51 (313)
T PRK05564         24 RFSHAHIIVGEDGIGKSLLAKEIALKIL   51 (313)
T ss_pred             CCCceEEeECCCCCCHHHHHHHHHHHHc
Confidence            4578999999999999999999999874

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=92.06  E-value=0.094  Score=53.32  Aligned_cols=26  Identities=35%  Similarity=0.519  Sum_probs=22.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        27 G~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          27 GEFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            44678999999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=92.03  E-value=0.1  Score=54.96  Aligned_cols=27  Identities=19%  Similarity=0.491  Sum_probs=21.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...-+.++|||||||||++|....-..
T Consensus        26 ~gef~vliGpSGsGKTTtLkMINrLie   52 (309)
T COG1125          26 EGEFLVLIGPSGSGKTTTLKMINRLIE   52 (309)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhcccC
Confidence            344578999999999999999876653

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=92.02  E-value=0.1  Score=53.02  Aligned_cols=27  Identities=26%  Similarity=0.551  Sum_probs=23.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            455688999999999999999998764

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=92.02  E-value=0.11  Score=51.42  Aligned_cols=27  Identities=22%  Similarity=0.445  Sum_probs=23.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||+.++|+..+.
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            355688999999999999999998754

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=92.01  E-value=0.097  Score=51.99  Aligned_cols=27  Identities=22%  Similarity=0.529  Sum_probs=23.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            355778999999999999999997654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=91.99  E-value=0.11  Score=49.35  Aligned_cols=19  Identities=42%  Similarity=0.546  Sum_probs=18.1

Q ss_pred             EEEEecCCCChhHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALV  624 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~  624 (741)
                      |.|+|++|+||||+++.+.
T Consensus         2 i~l~G~~g~GKTtL~~~l~   20 (170)
T cd01876           2 IAFAGRSNVGKSSLINALT   20 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHh
Confidence            6899999999999999998

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=91.99  E-value=0.18  Score=54.18  Aligned_cols=32  Identities=25%  Similarity=0.442  Sum_probs=24.6

Q ss_pred             Hhhccce-EEEEecCCCChhHHHHHHHHHhccC
Q psy17620        599 TMLTRHS-TMIVGPTGGGKSVVINALVKTSTVL  630 (741)
Q Consensus       599 ~l~~r~g-v~lvGp~gsGKTt~~~~L~~a~~~~  630 (741)
                      ......| |++.|||||||||.+-.+...+++-
T Consensus       120 ~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~  152 (353)
T COG2805         120 LAESPRGLILVTGPTGSGKSTTLAAMIDYINKH  152 (353)
T ss_pred             HHhCCCceEEEeCCCCCcHHHHHHHHHHHHhcc
Confidence            3445555 5577999999999998888887754

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=91.98  E-value=0.23  Score=46.27  Aligned_cols=39  Identities=23%  Similarity=0.368  Sum_probs=33.8

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV  644 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~  644 (741)
                      +++.|.+|+|||++...|+..+...+.++.+...+|.++
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~~~~   40 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPDDL   40 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCchhh
Confidence            789999999999999999999887777888888888444

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=91.97  E-value=0.11  Score=52.12  Aligned_cols=27  Identities=22%  Similarity=0.313  Sum_probs=22.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++..+.
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999998654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.96  E-value=0.41  Score=57.03  Aligned_cols=27  Identities=30%  Similarity=0.506  Sum_probs=24.6

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..|..+++||+|+|||++.+.+++.+.
T Consensus        38 l~hayLf~Gp~G~GKtt~A~~lAk~l~   64 (614)
T PRK14971         38 LAHAYLFCGPRGVGKTTCARIFAKTIN   64 (614)
T ss_pred             CCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999999975

>KOG0989|consensus

Probab=91.96  E-value=0.22  Score=53.63  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=21.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -.+++||||+|||++++++++++.
T Consensus        59 ~~LFyGPpGTGKTStalafar~L~   82 (346)
T KOG0989|consen   59 HYLFYGPPGTGKTSTALAFARALN   82 (346)
T ss_pred             eEEeeCCCCCcHhHHHHHHHHHhc
Confidence            345799999999999999999975

>PRK13948 shikimate kinase; Provisional

Probab=91.95  E-value=0.11  Score=52.30  Aligned_cols=29  Identities=21%  Similarity=0.103  Sum_probs=24.6

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.-...|+|+|.+||||||+-+.|++.++
T Consensus         7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg   35 (182)
T PRK13948          7 ERPVTWVALAGFMGTGKSRIGWELSRALM   35 (182)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            34446799999999999999999999864

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=91.94  E-value=0.11  Score=54.36  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=22.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..++-|+|+|||||||+.++|+.-..
T Consensus        33 Ge~lgivGeSGsGKSTL~r~l~Gl~~   58 (252)
T COG1124          33 GETLGIVGESGSGKSTLARLLAGLEK   58 (252)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhcccC
Confidence            34677999999999999999998654

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=91.92  E-value=0.14  Score=49.99  Aligned_cols=24  Identities=38%  Similarity=0.556  Sum_probs=20.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .+||++.||||+||||+...|.+.
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            579999999999999998777665

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=91.92  E-value=0.11  Score=53.97  Aligned_cols=27  Identities=30%  Similarity=0.524  Sum_probs=23.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999998754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=91.88  E-value=0.099  Score=54.24  Aligned_cols=27  Identities=26%  Similarity=0.500  Sum_probs=23.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLVE   52 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            345688999999999999999997653

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=91.88  E-value=0.12  Score=60.41  Aligned_cols=29  Identities=28%  Similarity=0.511  Sum_probs=25.6

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVL  630 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~  630 (741)
                      .+..+.|+||||+|||++.+.|++++...
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~le~~  130 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSLMERV  130 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence            35678899999999999999999998754

>PRK08116 hypothetical protein; Validated

Probab=91.87  E-value=0.25  Score=52.80  Aligned_cols=33  Identities=18%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      .+.|++|.|++|+|||.+...+++.+...+.++
T Consensus       113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v  145 (268)
T PRK08116        113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPV  145 (268)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            346899999999999999999999876545444

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=91.86  E-value=0.13  Score=49.66  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .|+++|++|+||||+++.|....
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~   23 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLF   23 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhc
Confidence            37899999999999999987653

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=91.85  E-value=0.12  Score=49.43  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+++|++|+||||+++.|...
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=91.85  E-value=0.1  Score=53.14  Aligned_cols=27  Identities=19%  Similarity=0.463  Sum_probs=23.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999998754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=91.85  E-value=0.17  Score=51.23  Aligned_cols=35  Identities=17%  Similarity=0.470  Sum_probs=27.4

Q ss_pred             HHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        594 VQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       594 ~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+|.+.+..  .+.++|+||.|+|||++++.+...+.
T Consensus         9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~   45 (234)
T PF01637_consen    9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK   45 (234)
T ss_dssp             HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence            344444444  57899999999999999999888763

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=91.85  E-value=0.13  Score=54.14  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=22.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+|||||++++++...+.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~   50 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLG   50 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            34578999999999999999987753

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=91.85  E-value=0.1  Score=53.43  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=23.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++..+.
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345678999999999999999998754

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=91.83  E-value=0.1  Score=54.45  Aligned_cols=46  Identities=20%  Similarity=0.115  Sum_probs=29.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL  649 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eL  649 (741)
                      ..+-++|||||||||++|.+..-+....-.+.+.--|-..++..++
T Consensus        35 ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~   80 (263)
T COG1127          35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL   80 (263)
T ss_pred             cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHH
Confidence            3567999999999999999887765433333333333334444333

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=91.82  E-value=0.098  Score=53.66  Aligned_cols=26  Identities=27%  Similarity=0.501  Sum_probs=22.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        30 G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          30 GEFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44678999999999999999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=91.81  E-value=0.1  Score=53.39  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=22.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+||||||++++++....
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          28 GEIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44588999999999999999998754

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=91.78  E-value=0.2  Score=50.75  Aligned_cols=28  Identities=36%  Similarity=0.431  Sum_probs=23.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      ..+.++|++||||||+.+.|+..+...|
T Consensus        25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~   52 (198)
T PRK03846         25 VVLWFTGLSGSGKSTVAGALEEALHELG   52 (198)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            4678999999999999999999875443

>cd01855 YqeH YqeH

Probab=91.75  E-value=0.2  Score=50.15  Aligned_cols=26  Identities=42%  Similarity=0.572  Sum_probs=23.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ....++++|.||+||||+++.|....
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence            45689999999999999999998763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=91.74  E-value=0.11  Score=52.23  Aligned_cols=25  Identities=24%  Similarity=0.515  Sum_probs=21.7

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ....+.|+||+||||||++++|+..
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3557889999999999999999864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00350 MCM minichromosome maintenance proteins

Probab=91.74  E-value=0.6  Score=54.44  Aligned_cols=107  Identities=24%  Similarity=0.379  Sum_probs=59.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccc--ccCCCCCcc--cChHHHHHHHhcCCCCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV--LNPETRDWY--DGLLSNIFRAVNKPLDPGS  680 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~--~d~~t~eW~--DGvls~i~R~~~~~~~~~~  680 (741)
                      .|+|+|+||+|||++.+.+++...+     ..++. -+..+...|-+.  .|+.+++|.  .|.+.             .
T Consensus       238 ~vLL~G~pGtGKs~lar~l~~~~~r-----~~~~~-~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~-------------~  298 (509)
T smart00350      238 NILLLGDPGTAKSQLLKYVEKTAPR-----AVYTT-GKGSSAVGLTAAVTRDPETREFTLEGGALV-------------L  298 (509)
T ss_pred             eEEEeCCCChhHHHHHHHHHHHcCc-----ceEcC-CCCCCcCCccccceEccCcceEEecCccEE-------------e
Confidence            6999999999999999999987532     11111 001111122221  233445553  33221             1


Q ss_pred             CCCeEEEEc--CCCChhhhhhccccccCCceeecc-CCCeeecCCCceEEEEeC
Q psy17620        681 KERKYILFD--GDVDALWIENMNSVMDDNKILTLA-NGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       681 ~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~-nGeri~l~~~~rliFE~~  731 (741)
                      .++--+++|  ..+++.-...|..+|++. .+++. .|....++..+++|.-+.
T Consensus       299 A~~Gil~iDEi~~l~~~~q~~L~e~me~~-~i~i~k~G~~~~l~~~~~viAa~N  351 (509)
T smart00350      299 ADNGVCCIDEFDKMDDSDRTAIHEAMEQQ-TISIAKAGITTTLNARCSVLAAAN  351 (509)
T ss_pred             cCCCEEEEechhhCCHHHHHHHHHHHhcC-EEEEEeCCEEEEecCCcEEEEEeC
Confidence            234577777  345666667777777654 33333 466666666666665444

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=91.74  E-value=0.21  Score=57.10  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=27.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN  640 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~in  640 (741)
                      .+++|+||||+|||.+.+.++..+...+....+..++
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~  167 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT  167 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            4799999999999999999998865433233344443

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=91.73  E-value=0.12  Score=50.95  Aligned_cols=26  Identities=31%  Similarity=0.532  Sum_probs=22.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+||||||++++|+..+.
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          28 GESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccC
Confidence            44688999999999999999998764

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=91.72  E-value=0.12  Score=53.15  Aligned_cols=25  Identities=32%  Similarity=0.606  Sum_probs=22.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ...+.|+||+||||||++++++..+
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          26 GEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4467899999999999999999987

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=91.71  E-value=0.12  Score=49.18  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=19.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+++|+||+||||+++.|...
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999998753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PRK06835 DNA replication protein DnaC; Validated

Probab=91.68  E-value=0.19  Score=55.33  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=27.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR  635 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~  635 (741)
                      .+++++++||||+|||.+..++++.+-.-|..|.
T Consensus       182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~  215 (329)
T PRK06835        182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVI  215 (329)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence            3589999999999999999999998765554443

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=91.68  E-value=0.11  Score=53.29  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=22.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++++..+.
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          26 GEIFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45688999999999999999998653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=91.65  E-value=0.14  Score=52.11  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=22.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ...++|+||+||||||++++++...
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHH
Confidence            4578999999999999999998764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=91.63  E-value=0.11  Score=52.71  Aligned_cols=27  Identities=19%  Similarity=0.386  Sum_probs=22.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++..+.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            355688999999999999999987653

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=91.62  E-value=0.89  Score=51.95  Aligned_cols=112  Identities=14%  Similarity=0.117  Sum_probs=67.1

Q ss_pred             cCcceeecccccCChhh-HHHHHHHHHHHHHHHhhcCceeE--e---ecceEEecCCceEEEeccCCCCCCCCchHHHhh
Q psy17620        421 CGAWGCFDEFNRIDVSV-LSVISTQLLTIRTALLINATRFQ--F---EGHDIIMNNKVGIFITMNPGYAGRTELPESVKA  494 (741)
Q Consensus       421 ~GaW~cfDEfnrl~~~v-LSvva~qi~~I~~al~~~~~~~~--~---~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~  494 (741)
                      .+.++++||+||.+.+- ..-+   +..+..-.+...-.+.  +   +++.+.+.+++.|+.|||....+-..+-..|+.
T Consensus       272 ~~~vliIDEINRani~kiFGel---~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR  348 (459)
T PRK11331        272 KKYVFIIDEINRANLSKVFGEV---MMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR  348 (459)
T ss_pred             CCcEEEEehhhccCHHHhhhhh---hhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh
Confidence            57999999999998653 3333   2222211111111111  1   134678889999999999865555578899999


Q ss_pred             cceeeeccCCCH--HHHHHHHHhhcCc--cchHHHHHHHHHHHHHHH
Q psy17620        495 LFRPVVCIVPDF--ELICQIMLFSEGF--LEAKVLAKKMAVLYKLSK  537 (741)
Q Consensus       495 lFRpvam~~PD~--~~I~ei~L~s~GF--~~a~~La~Kl~~l~~l~~  537 (741)
                      .|+-|.|. ||+  ..+-..+ ...+-  .....+++++..+-+..+
T Consensus       349 RF~fi~i~-p~~~~~~~~~~l-~~~~~~~~~~~~l~~~l~~LN~~I~  393 (459)
T PRK11331        349 RFSFIDIE-PGFDTPQFRNFL-LNKKAEPSFVESLCQKMNELNQEIS  393 (459)
T ss_pred             hhheEEec-CCCChHHHHHHH-HhcccCchhHHHHHHHHHHHHHHHH
Confidence            99888876 443  3333333 33332  123556666666655554

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.61  E-value=0.17  Score=59.25  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=28.0

Q ss_pred             HHHHHhh---ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        595 QMYETML---TRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       595 qL~e~l~---~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +|...+.   ..|..+++||+|+||||+.+.+++.+..
T Consensus        27 ~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         27 SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3444443   3577999999999999999999999863

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=91.59  E-value=0.12  Score=53.23  Aligned_cols=27  Identities=22%  Similarity=0.409  Sum_probs=23.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            455789999999999999999998764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=91.59  E-value=0.12  Score=53.08  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=22.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257          31 GETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45688999999999999999998754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=91.59  E-value=0.14  Score=50.21  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +-|+|+|++|+||||+++.+...
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~   24 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEG   24 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999998854

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.58  E-value=0.12  Score=52.11  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=22.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+||||||++++|+..+.
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         26 SAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            44678999999999999999998754

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=91.58  E-value=0.097  Score=54.87  Aligned_cols=27  Identities=26%  Similarity=0.512  Sum_probs=23.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ...++|+|++||||||+++.|+..+..
T Consensus        30 Ge~~~i~G~nGsGKSTL~~~l~GLl~p   56 (235)
T COG1122          30 GERVLLIGPNGSGKSTLLKLLNGLLKP   56 (235)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCcCcC
Confidence            447899999999999999999988754

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=91.55  E-value=0.12  Score=53.57  Aligned_cols=27  Identities=22%  Similarity=0.427  Sum_probs=22.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            345688999999999999999997653

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=91.54  E-value=0.12  Score=53.62  Aligned_cols=26  Identities=27%  Similarity=0.505  Sum_probs=22.3

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ....+.|+||+||||||++++|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGHP   50 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34568899999999999999999863

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit

Probab=91.53  E-value=0.57  Score=55.52  Aligned_cols=31  Identities=23%  Similarity=0.377  Sum_probs=24.8

Q ss_pred             HHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        598 ETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .....++-.+|.|+||+||||++..+..++.
T Consensus       155 ~~al~~~~~vitGgpGTGKTt~v~~ll~~l~  185 (586)
T TIGR01447       155 ALALKSNFSLITGGPGTGKTTTVARLLLALV  185 (586)
T ss_pred             HHHhhCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3444577889999999999999988877654

This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=91.51  E-value=0.12  Score=52.76  Aligned_cols=27  Identities=33%  Similarity=0.543  Sum_probs=23.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   50 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            345688999999999999999988754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=91.51  E-value=0.13  Score=53.96  Aligned_cols=25  Identities=32%  Similarity=0.654  Sum_probs=22.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ...+.|+||+||||||++++|+...
T Consensus        32 Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         32 NQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4568899999999999999999764

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=91.50  E-value=0.22  Score=54.62  Aligned_cols=36  Identities=28%  Similarity=0.357  Sum_probs=30.7

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.-|..+...+..+++.|-+||||||++++|.....
T Consensus       163 a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~  198 (355)
T COG4962         163 AKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFID  198 (355)
T ss_pred             HHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCC
Confidence            344777888899999999999999999999987653

>cd01858 NGP_1 NGP-1

Probab=91.49  E-value=0.14  Score=49.69  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=21.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +..|+++|+||+||||+++.|.+.
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~  125 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSK  125 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcC
Confidence            456889999999999999999764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=91.48  E-value=0.12  Score=53.57  Aligned_cols=27  Identities=33%  Similarity=0.463  Sum_probs=23.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345688999999999999999998754

>cd00157 Rho Rho (Ras homology) family

Probab=91.47  E-value=0.14  Score=49.39  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=19.3

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|++|+||||+++.|...
T Consensus         3 i~i~G~~~~GKSsli~~l~~~   23 (171)
T cd00157           3 IVVVGDGAVGKTCLLISYTTG   23 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998765

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04113 Rab4 Rab4 subfamily

Probab=91.46  E-value=0.14  Score=49.11  Aligned_cols=21  Identities=33%  Similarity=0.725  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ++++|++|+||||+++.|...
T Consensus         3 i~v~G~~~vGKTsli~~l~~~   23 (161)
T cd04113           3 FIIIGSSGTGKSCLLHRFVEN   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK09087 hypothetical protein; Validated

Probab=91.44  E-value=0.15  Score=53.03  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=21.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ...++|+||+|||||++.+.+++..
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~   68 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKS   68 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhc
Confidence            3459999999999999999888653

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=91.44  E-value=0.12  Score=53.84  Aligned_cols=27  Identities=26%  Similarity=0.527  Sum_probs=23.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+....
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            455788999999999999999998753

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=91.43  E-value=0.37  Score=59.64  Aligned_cols=37  Identities=24%  Similarity=0.497  Sum_probs=29.9

Q ss_pred             HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +.++.+.+..  ..+++|+||||+|||++++.|+..+..
T Consensus       196 i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~  234 (852)
T TIGR03345       196 IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA  234 (852)
T ss_pred             HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence            5666665544  358999999999999999999998743

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd01870 RhoA_like RhoA-like subfamily

Probab=91.43  E-value=0.14  Score=49.75  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=20.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |.-|+++|++|+|||++++.+..-
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~   24 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKD   24 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            456899999999999999988763

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=91.42  E-value=0.14  Score=47.55  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=19.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      -|.++|++|+||||+++.+....
T Consensus         3 ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999987653

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=91.42  E-value=0.39  Score=55.08  Aligned_cols=41  Identities=17%  Similarity=0.360  Sum_probs=30.9

Q ss_pred             chhhHHHHHHHhhccceEE-EEecCCCChhHHHHHHHHHhcc
Q psy17620        589 VSEDVVQMYETMLTRHSTM-IVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       589 ~~~Dv~qL~e~l~~r~gv~-lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ...+..++.+.+..-||++ +.|||||||||..-.+.+.++.
T Consensus       243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~  284 (500)
T COG2804         243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNT  284 (500)
T ss_pred             CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence            3344677888888889876 5699999999887766665543

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=91.39  E-value=0.13  Score=50.68  Aligned_cols=27  Identities=33%  Similarity=0.624  Sum_probs=23.6

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++..+.
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            456788999999999999999998764

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=91.36  E-value=0.21  Score=55.20  Aligned_cols=31  Identities=23%  Similarity=0.355  Sum_probs=25.2

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc-cCCCCeEE
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST-VLGYPART  636 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~-~~~~~~~~  636 (741)
                      ++++|++|+||||+.+.|+..+. ..|.++.+
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~   33 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAV   33 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEE
Confidence            47899999999999999999986 45655443

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=91.36  E-value=0.3  Score=54.57  Aligned_cols=80  Identities=15%  Similarity=0.248  Sum_probs=44.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc-cccccccc-c----CCCCCcccC-hHHHHHHHhcCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVL-N----PETRDWYDG-LLSNIFRAVNKPLD  677 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t-~~eLyG~~-d----~~t~eW~DG-vls~i~R~~~~~~~  677 (741)
                      .++++||||+|||+..+.+.+.+..-.....+..||..... .-+.|..+ +    +-...|.-. ++..++.....   
T Consensus        44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~---  120 (366)
T COG1474          44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK---  120 (366)
T ss_pred             cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh---
Confidence            49999999999999999999887643222323444433222 23333322 1    112234332 33444433322   


Q ss_pred             CCCCCCeEEEEc
Q psy17620        678 PGSKERKYILFD  689 (741)
Q Consensus       678 ~~~~~~~WIVfD  689 (741)
                        ......||+|
T Consensus       121 --~~~~~IvvLD  130 (366)
T COG1474         121 --KGKTVIVILD  130 (366)
T ss_pred             --cCCeEEEEEc
Confidence              2466888898

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=91.35  E-value=0.13  Score=49.44  Aligned_cols=27  Identities=22%  Similarity=0.377  Sum_probs=22.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++....
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            455788999999999999999987653

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK15453 phosphoribulokinase; Provisional

Probab=91.35  E-value=0.21  Score=53.62  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=24.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGY  632 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~  632 (741)
                      +.-|.|.|+|||||||+.+.|+..+...+.
T Consensus         5 ~piI~ItG~SGsGKTTva~~l~~if~~~~~   34 (290)
T PRK15453          5 HPIIAVTGSSGAGTTTVKRAFEKIFRRENI   34 (290)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence            446779999999999999999988875543

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=91.34  E-value=0.14  Score=50.19  Aligned_cols=27  Identities=22%  Similarity=0.379  Sum_probs=22.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++....
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999987754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=91.33  E-value=0.25  Score=52.71  Aligned_cols=67  Identities=18%  Similarity=0.315  Sum_probs=41.3

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeC--CC--ccccc----------cccccccCCCCCcccChHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN--PK--AVSVI----------ELYGVLNPETRDWYDGLLSNIFRA  671 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~in--pk--a~t~~----------eLyG~~d~~t~eW~DGvls~i~R~  671 (741)
                      |.+.|+|||||||+.+.+.+.+...|.++.+...+  .+  -.+++          .=|-+++|+..+|.  +|...+++
T Consensus         2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~d--lL~~~l~~   79 (277)
T cd02029           2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFD--LLEELFRT   79 (277)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHH--HHHHHHHH
Confidence            57899999999999999999987665443222211  11  01111          12334557766663  67777777


Q ss_pred             hcC
Q psy17620        672 VNK  674 (741)
Q Consensus       672 ~~~  674 (741)
                      +.+
T Consensus        80 L~~   82 (277)
T cd02029          80 YGE   82 (277)
T ss_pred             HHc
Confidence            643

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=91.32  E-value=0.12  Score=53.68  Aligned_cols=27  Identities=19%  Similarity=0.506  Sum_probs=23.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999998753

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.32  E-value=0.13  Score=52.09  Aligned_cols=27  Identities=15%  Similarity=0.293  Sum_probs=23.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...-+.|+||+||||||++++++....
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            455788999999999999999988653

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=91.31  E-value=0.15  Score=51.54  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.9

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |.|.|+|||||||+.+.|++.+.
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~~   24 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILP   24 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            67899999999999999999863

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK10908 cell division protein FtsE; Provisional

Probab=91.31  E-value=0.14  Score=52.64  Aligned_cols=27  Identities=19%  Similarity=0.427  Sum_probs=23.3

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456788999999999999999997653

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=91.30  E-value=0.13  Score=53.02  Aligned_cols=27  Identities=26%  Similarity=0.512  Sum_probs=23.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+....
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            355788999999999999999998653

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=91.29  E-value=0.18  Score=58.51  Aligned_cols=27  Identities=19%  Similarity=0.303  Sum_probs=25.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      .|++++.||+|+||||+.+.+++++..
T Consensus        43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc   69 (507)
T PRK06645         43 AGGYLLTGIRGVGKTTSARIIAKAVNC   69 (507)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            479999999999999999999999864

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=91.28  E-value=0.14  Score=52.89  Aligned_cols=27  Identities=22%  Similarity=0.416  Sum_probs=23.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999998754

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=91.23  E-value=0.14  Score=50.85  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=22.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+....
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          28 GEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCC
Confidence            45688999999999999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK05642 DNA replication initiation factor; Validated

Probab=91.21  E-value=0.26  Score=51.46  Aligned_cols=30  Identities=23%  Similarity=0.279  Sum_probs=24.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      .+++|+||+|+|||.+.+.++......+..
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~   75 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEP   75 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCc
Confidence            578999999999999999998776443433

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=91.20  E-value=0.14  Score=52.72  Aligned_cols=26  Identities=42%  Similarity=0.709  Sum_probs=22.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+.+.|+||+||||||++++|+..+.
T Consensus        29 G~~~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          29 GETVAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            44588999999999999999998754

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=91.19  E-value=0.15  Score=50.71  Aligned_cols=25  Identities=36%  Similarity=0.643  Sum_probs=21.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ....|-||||+||||||++-+|+.-
T Consensus        35 ~Ge~vaiVG~SGSGKSTLl~vlAGL   59 (228)
T COG4181          35 RGETVAIVGPSGSGKSTLLAVLAGL   59 (228)
T ss_pred             CCceEEEEcCCCCcHHhHHHHHhcC
Confidence            3457889999999999999999864

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=91.18  E-value=0.28  Score=48.46  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=23.0

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEE
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYT  638 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~  638 (741)
                      ++|.||||+|||++...++....+.|.++.+..
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s   34 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT   34 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            689999999999987665554434455554443

A related protein is found in archaea.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=91.17  E-value=0.48  Score=46.48  Aligned_cols=75  Identities=21%  Similarity=0.258  Sum_probs=48.8

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeE
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKY  685 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~W  685 (741)
                      .+.-+..|+||||+--.|+.++...|.++.....+|..-+...+++.-.      ....+...+++..      .....+
T Consensus         3 ~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~------~~~~l~~~~~~~~------~~~yD~   70 (169)
T cd02037           3 AVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPM------KMGAIKQFLTDVD------WGELDY   70 (169)
T ss_pred             EEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcc------hHHHHHHHHHHhh------cCCCCE
Confidence            3566889999999999999999988999888888887654333221110      1112333333221      124579


Q ss_pred             EEEcCCC
Q psy17620        686 ILFDGDV  692 (741)
Q Consensus       686 IVfDG~v  692 (741)
                      ||+|.|-
T Consensus        71 VIiD~pp   77 (169)
T cd02037          71 LVIDMPP   77 (169)
T ss_pred             EEEeCCC
Confidence            9999774

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=91.16  E-value=0.14  Score=52.83  Aligned_cols=27  Identities=22%  Similarity=0.465  Sum_probs=23.6

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++..+.
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            456788999999999999999998754

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=91.16  E-value=0.14  Score=53.06  Aligned_cols=27  Identities=26%  Similarity=0.500  Sum_probs=23.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+....
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            355788999999999999999997653

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=91.16  E-value=0.18  Score=48.38  Aligned_cols=21  Identities=38%  Similarity=0.703  Sum_probs=19.2

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|++|+|||++++.+...
T Consensus         2 i~vvG~~~vGKtsl~~~~~~~   22 (162)
T PF00071_consen    2 IVVVGDSGVGKTSLINRLING   22 (162)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999998864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=91.15  E-value=0.13  Score=52.59  Aligned_cols=25  Identities=28%  Similarity=0.484  Sum_probs=22.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++|+..+.
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~~   48 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLEK   48 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCCC
Confidence            6789999999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=91.15  E-value=0.15  Score=50.91  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=23.3

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999998764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=91.15  E-value=0.14  Score=52.22  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=22.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          31 GEVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            45688999999999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=91.14  E-value=0.13  Score=54.27  Aligned_cols=26  Identities=23%  Similarity=0.514  Sum_probs=22.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         27 GELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44688999999999999999998754

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=91.12  E-value=0.13  Score=53.17  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=23.6

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            355788999999999999999998765

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR00017 cmk cytidylate kinase

Probab=91.10  E-value=0.17  Score=52.36  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=21.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|.|.||+||||||+.+.|++.++
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~~~   27 (217)
T TIGR00017         4 IIAIDGPSGAGKSTVAKAVAEKLG   27 (217)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999998764

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=91.10  E-value=0.27  Score=50.72  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=21.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.+.|+|.||||||+..+.|...+.
T Consensus        24 ~H~~I~G~TGsGKS~~~~~ll~~l~   48 (229)
T PF01935_consen   24 RHIAIFGTTGSGKSNTVKVLLEELL   48 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4556889999999999999998876

It contains several conserved aspartates and histidines that could be metal ligands.

>KOG3347|consensus

Probab=91.09  E-value=0.18  Score=49.07  Aligned_cols=49  Identities=20%  Similarity=0.321  Sum_probs=35.9

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccC
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP  655 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~  655 (741)
                      ..+..++|.|-||+||||+-+.|++...     .....| -+-+.-++||+.||.
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~~~-----~~~i~i-sd~vkEn~l~~gyDE   53 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEKTG-----LEYIEI-SDLVKENNLYEGYDE   53 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHHhC-----CceEeh-hhHHhhhcchhcccc
Confidence            3567899999999999999999998753     122222 234455789999885

>KOG0731|consensus

Probab=91.07  E-value=0.13  Score=61.76  Aligned_cols=31  Identities=26%  Similarity=0.595  Sum_probs=24.6

Q ss_pred             HHHHhhc--cceEEEEecCCCChhHHHHHHHHH
Q psy17620        596 MYETMLT--RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       596 L~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+-+-+  -+||+|+||||||||.+.|+.|.-
T Consensus       335 ~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE  367 (774)
T KOG0731|consen  335 QYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE  367 (774)
T ss_pred             HHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc
Confidence            3454533  569999999999999999988764

>cd01862 Rab7 Rab7 subfamily

Probab=91.07  E-value=0.15  Score=49.19  Aligned_cols=21  Identities=33%  Similarity=0.659  Sum_probs=19.0

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|++|+||||+++.+...
T Consensus         3 i~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           3 VIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999998754

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=91.05  E-value=0.21  Score=56.44  Aligned_cols=26  Identities=31%  Similarity=0.608  Sum_probs=23.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+.++++||||+|||++.+.|++.+.
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~   75 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999999863

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=91.05  E-value=0.14  Score=50.31  Aligned_cols=27  Identities=33%  Similarity=0.507  Sum_probs=23.3

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...-+.|+||+||||||++++++..+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            455788999999999999999998754

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PLN02674 adenylate kinase

Probab=91.04  E-value=0.17  Score=53.36  Aligned_cols=25  Identities=20%  Similarity=0.442  Sum_probs=22.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..|+|.|||||||||.-+.|++.++
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~   56 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYC   56 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcC
Confidence            5699999999999999999998764

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=91.04  E-value=0.14  Score=50.94  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=22.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...-+.|+||+||||||++++++....
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~~   50 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLLK   50 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345678999999999999999988654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=91.02  E-value=0.13  Score=53.90  Aligned_cols=27  Identities=30%  Similarity=0.427  Sum_probs=23.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+....
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRLA   54 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456789999999999999999998754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=90.99  E-value=0.18  Score=53.29  Aligned_cols=24  Identities=33%  Similarity=0.663  Sum_probs=20.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -+-|+||.|+||||++|++...+.
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLGll~   55 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILGLLK   55 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            467999999999999999988654

>PHA02774 E1; Provisional

Probab=90.99  E-value=0.57  Score=54.85  Aligned_cols=26  Identities=31%  Similarity=0.489  Sum_probs=23.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.+++++||||+|||.+.-.|++.+.
T Consensus       434 knciv~~GPP~TGKS~fa~sL~~~L~  459 (613)
T PHA02774        434 KNCLVIYGPPDTGKSMFCMSLIKFLK  459 (613)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            56999999999999999999988863

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=90.98  E-value=0.14  Score=52.49  Aligned_cols=27  Identities=19%  Similarity=0.412  Sum_probs=23.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++..+.
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   62 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            456788999999999999999998754

>PRK13973 thymidylate kinase; Provisional

Probab=90.95  E-value=0.26  Score=50.60  Aligned_cols=38  Identities=29%  Similarity=0.370  Sum_probs=29.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      =|.+.|+.||||||..+.|++.+...|.++ +..=.|..
T Consensus         5 ~IviEG~dGsGKtTq~~~l~~~l~~~g~~~-~~~~~p~~   42 (213)
T PRK13973          5 FITFEGGEGAGKSTQIRLLAERLRAAGYDV-LVTREPGG   42 (213)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeE-EEEECCCC
Confidence            467899999999999999999998766554 33345654

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=90.94  E-value=0.15  Score=53.37  Aligned_cols=26  Identities=31%  Similarity=0.629  Sum_probs=22.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ....+.|+||+||||||++++++...
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         28 ENQVTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            35568899999999999999999854

>cd01860 Rab5_related Rab5-related subfamily

Probab=90.93  E-value=0.16  Score=48.58  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -++++|++|+|||++++.|...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (163)
T cd01860           3 KLVLLGDSSVGKSSLVLRFVKN   24 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=90.93  E-value=0.14  Score=53.28  Aligned_cols=27  Identities=19%  Similarity=0.490  Sum_probs=22.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345678999999999999999998654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=90.92  E-value=0.15  Score=52.00  Aligned_cols=26  Identities=19%  Similarity=0.498  Sum_probs=22.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+||||||++++++....
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         28 GEALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45678999999999999999998754

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=90.91  E-value=0.16  Score=53.42  Aligned_cols=26  Identities=31%  Similarity=0.440  Sum_probs=22.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        25 Ge~~~i~G~NGsGKSTLlk~L~G~~~   50 (246)
T cd03237          25 SEVIGILGPNGIGKTTFIKMLAGVLK   50 (246)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            44688999999999999999998754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=90.90  E-value=0.14  Score=51.86  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=22.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+||||||++++++..+.
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (204)
T PRK13538         27 GELVQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44578999999999999999998754

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=90.89  E-value=0.2  Score=49.58  Aligned_cols=26  Identities=31%  Similarity=0.509  Sum_probs=22.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-.+|+||.|+||||++.++.-++.
T Consensus        19 ~g~~vi~G~Ng~GKStil~ai~~~L~   44 (202)
T PF13476_consen   19 PGLNVIYGPNGSGKSTILEAIRYALG   44 (202)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            35678999999999999999988875

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=90.89  E-value=0.15  Score=53.65  Aligned_cols=27  Identities=37%  Similarity=0.649  Sum_probs=23.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+....
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~laGl~~   55 (258)
T PRK14241         29 PRSVTAFIGPSGCGKSTVLRTLNRMHE   55 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            345688999999999999999998753

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.89  E-value=0.17  Score=53.39  Aligned_cols=26  Identities=38%  Similarity=0.561  Sum_probs=22.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        38 Ge~~~l~G~nGsGKSTLl~~l~G~~~   63 (259)
T PRK14274         38 NEVTAIIGPSGCGKSTFIKTLNLMIQ   63 (259)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            45688999999999999999998753

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.88  E-value=0.15  Score=53.37  Aligned_cols=27  Identities=26%  Similarity=0.537  Sum_probs=23.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++..+.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            345688999999999999999998753

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.88  E-value=0.14  Score=53.33  Aligned_cols=27  Identities=33%  Similarity=0.502  Sum_probs=23.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999998754

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=90.86  E-value=0.17  Score=49.06  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=19.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+++|++|+|||++++.+...
T Consensus         5 ki~vvG~~~~GKSsl~~~~~~~   26 (167)
T cd01867           5 KLLLIGDSGVGKSCLLLRFSED   26 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=90.86  E-value=0.15  Score=53.33  Aligned_cols=27  Identities=22%  Similarity=0.516  Sum_probs=22.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLEQ   54 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345688999999999999999998753

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=90.86  E-value=0.14  Score=52.68  Aligned_cols=27  Identities=22%  Similarity=0.502  Sum_probs=23.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          32 SGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            355788999999999999999998764

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd04114 Rab30 Rab30 subfamily

Probab=90.85  E-value=0.17  Score=48.75  Aligned_cols=23  Identities=17%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.+...
T Consensus         8 ~~v~v~G~~~~GKSsli~~l~~~   30 (169)
T cd04114           8 FKIVLIGNAGVGKTCLVRRFTQG   30 (169)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999998753

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=90.85  E-value=0.15  Score=51.93  Aligned_cols=27  Identities=41%  Similarity=0.630  Sum_probs=22.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...-+.|+||+||||||++++|+..+.
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999998754

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0482|consensus

Probab=90.82  E-value=1.4  Score=50.56  Aligned_cols=135  Identities=24%  Similarity=0.370  Sum_probs=85.0

Q ss_pred             cCcceeecccccCChhhHHH----HHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCC---------CCC
Q psy17620        421 CGAWGCFDEFNRIDVSVLSV----ISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAG---------RTE  487 (741)
Q Consensus       421 ~GaW~cfDEfnrl~~~vLSv----va~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~g---------r~e  487 (741)
                      -|.-+|+|||+.+...---+    +-||--+|..           -|-.-.||-.|+|.+..||-|..         .-.
T Consensus       439 D~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaK-----------AGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~  507 (721)
T KOG0482|consen  439 DGGICCIDEFDKMDESDRTAIHEVMEQQTISIAK-----------AGINTTLNARTSILAAANPAYGRYNPRRSPEQNIN  507 (721)
T ss_pred             cCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhh-----------hccccchhhhHHhhhhcCccccccCcccChhHhcC
Confidence            35679999999998764333    3344333321           14444788999999999997642         136


Q ss_pred             chHHHhhcceeeecc--CCCHH---HHHHHHHhhc--------Cc--------------------cchHHHHHHHHHHHH
Q psy17620        488 LPESVKALFRPVVCI--VPDFE---LICQIMLFSE--------GF--------------------LEAKVLAKKMAVLYK  534 (741)
Q Consensus       488 LP~nLk~lFRpvam~--~PD~~---~I~ei~L~s~--------GF--------------------~~a~~La~Kl~~l~~  534 (741)
                      ||..|-+.|--+.++  .||..   .+|+-+.+-+        +|                    .-+..|+..++..|-
T Consensus       508 LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv  587 (721)
T KOG0482|consen  508 LPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYV  587 (721)
T ss_pred             CcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence            999999999888776  45442   2232222211        11                    124567788888776


Q ss_pred             HHHH-HhhcCCccccchhhHHHHHHHhhHhHhh
Q psy17620        535 LSKE-QLSKQCHYDFGMRALKSVLVMAGELKRA  566 (741)
Q Consensus       535 l~~e-~ls~q~hydfgLRalksVL~~a~~l~~~  566 (741)
                      ..+. .-++.+|---.-|.+.++|+.+.++.|-
T Consensus       588 ~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarL  620 (721)
T KOG0482|consen  588 ELRREARSSKDFTYTTPRTLLGILRLSTALARL  620 (721)
T ss_pred             HHHHHhhccCCCcccCHHHHHHHHHHHHHHHHh
Confidence            5553 3334344334679999999988776653

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=90.80  E-value=0.17  Score=51.12  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=23.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++....
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999998753

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=90.79  E-value=0.16  Score=48.47  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=18.8

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|++|+|||++++.+...
T Consensus         2 i~i~G~~~~GKTsl~~~~~~~   22 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLKHA   22 (160)
T ss_pred             EEEEcCCCCCHHHHHHHHhcC
Confidence            689999999999999998754

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=90.78  E-value=0.18  Score=51.82  Aligned_cols=27  Identities=26%  Similarity=0.523  Sum_probs=23.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++++..+.
T Consensus        33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   59 (224)
T TIGR02324        33 AGECVALSGPSGAGKSTLLKSLYANYL   59 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            455788999999999999999998764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=90.78  E-value=0.16  Score=53.70  Aligned_cols=26  Identities=27%  Similarity=0.569  Sum_probs=22.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ....+.|+||+||||||++++|+..+
T Consensus        38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         38 KNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45568899999999999999999875

>PLN02165 adenylate isopentenyltransferase

Probab=90.78  E-value=0.17  Score=55.51  Aligned_cols=24  Identities=33%  Similarity=0.437  Sum_probs=22.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .++|+||||||||++...|++.++
T Consensus        45 iivIiGPTGSGKStLA~~LA~~l~   68 (334)
T PLN02165         45 VVVIMGATGSGKSRLSVDLATRFP   68 (334)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHcC
Confidence            588999999999999999999865

>PRK00098 GTPase RsgA; Reviewed

Probab=90.77  E-value=0.22  Score=53.96  Aligned_cols=34  Identities=26%  Similarity=0.414  Sum_probs=28.3

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +..|.+.+. ...++++|+||+||||+++.|....
T Consensus       155 i~~L~~~l~-gk~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        155 LDELKPLLA-GKVTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             HHHHHhhcc-CceEEEECCCCCCHHHHHHHHhCCc
Confidence            666777665 6688999999999999999998654

>cd01861 Rab6 Rab6 subfamily

Probab=90.76  E-value=0.17  Score=48.35  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=19.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+++|++|+||||+++.+...
T Consensus         2 ki~liG~~~~GKSsli~~l~~~   23 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYD   23 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998654

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=90.76  E-value=0.59  Score=57.06  Aligned_cols=79  Identities=18%  Similarity=0.269  Sum_probs=45.3

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccC----CCC-eEEEEeCCCccc-c--------ccccccccCCCCCcccChHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVL----GYP-ARTYTLNPKAVS-V--------IELYGVLNPETRDWYDGLLSNIFRA  671 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~----~~~-~~~~~inpka~t-~--------~eLyG~~d~~t~eW~DGvls~i~R~  671 (741)
                      ++|.|+||+|||++++.+.+.+...    +.+ +.+..||.-.+. .        .+|.|.. |.++--...++..+++.
T Consensus       784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~-P~~GlsS~evLerLF~~  862 (1164)
T PTZ00112        784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKK-PPNALNSFKILDRLFNQ  862 (1164)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCC-CCccccHHHHHHHHHhh
Confidence            5699999999999999988776421    223 566677753322 1        2333432 32221233355666654


Q ss_pred             hcCCCCCCCCCCeEEEEc
Q psy17620        672 VNKPLDPGSKERKYILFD  689 (741)
Q Consensus       672 ~~~~~~~~~~~~~WIVfD  689 (741)
                      ....    ......||+|
T Consensus       863 L~k~----~r~v~IIILD  876 (1164)
T PTZ00112        863 NKKD----NRNVSILIID  876 (1164)
T ss_pred             hhcc----cccceEEEee
Confidence            4221    2234689999

>KOG2749|consensus

Probab=90.75  E-value=0.3  Score=53.51  Aligned_cols=39  Identities=28%  Similarity=0.341  Sum_probs=29.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP  641 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp  641 (741)
                      ...||+|||+.+||||+.++|..---+.|.++.+..++|
T Consensus       103 GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDv  141 (415)
T KOG2749|consen  103 GPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDV  141 (415)
T ss_pred             CCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCC
Confidence            568999999999999999999987655565444443333

>cd01864 Rab19 Rab19 subfamily

Probab=90.74  E-value=0.17  Score=48.87  Aligned_cols=23  Identities=17%  Similarity=0.429  Sum_probs=19.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.+...
T Consensus         4 ~kv~vvG~~~~GKTsli~~l~~~   26 (165)
T cd01864           4 FKIILIGDSNVGKTCVVQRFKSG   26 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            45889999999999999998653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK12288 GTPase RsgA; Reviewed

Probab=90.74  E-value=0.23  Score=55.10  Aligned_cols=33  Identities=30%  Similarity=0.499  Sum_probs=27.5

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHH
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +..|.+.+. ...++++|+||+||||+++.|...
T Consensus       196 ideL~~~L~-~ki~~~vG~sgVGKSTLiN~Ll~~  228 (347)
T PRK12288        196 LEELEAALT-GRISIFVGQSGVGKSSLINALLPE  228 (347)
T ss_pred             HHHHHHHHh-hCCEEEECCCCCCHHHHHHHhccc
Confidence            667777775 456899999999999999999865

>PRK10867 signal recognition particle protein; Provisional

Probab=90.73  E-value=0.28  Score=55.98  Aligned_cols=40  Identities=20%  Similarity=0.155  Sum_probs=31.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccC-CCCeEEEEeCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPK  642 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~~~inpk  642 (741)
                      ...|+++|++||||||..--|+..+... |.++-+...++.
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~  140 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY  140 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence            3578999999999999999999887766 666665555543

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=90.73  E-value=0.26  Score=54.23  Aligned_cols=28  Identities=25%  Similarity=0.275  Sum_probs=25.3

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|..+++||+|+||+++.+.+++++.
T Consensus        26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~   53 (329)
T PRK08058         26 RLSHAYLFEGAKGTGKKATALWLAKSLF   53 (329)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence            4578999999999999999999999974

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=90.72  E-value=0.16  Score=52.51  Aligned_cols=27  Identities=33%  Similarity=0.570  Sum_probs=23.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+....
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGFLT   50 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            355788999999999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	741
3vkg_A	3245	X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn		2e-90
3vkh_A	3367	X-Ray Structure Of A Functional Full-Length Dynein		3e-90
3qmz_A	2486	Crystal Structure Of The Cytoplasmic Dynein Heavy C		7e-53
4ai6_A	2695	Dynein Motor Domain - Adp Complex Length = 2695		1e-52

>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245

Iteration: 1
 Score =  330 bits (845), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 213/645 (33%), Positives = 324/645 (50%), Gaps = 142/645 (22%)
Query: 199  KKFNTVLIVDVHAR--EIKDNFIGSNSLSRSLESVIMWETHKNPRV----IEQCLVPNRL 252
            + FN V + D H++  E  DN+     L   L S I+W T  +  +    ++Q  +  +L
Sbjct: 427  QHFNQVDVND-HSKYSEWVDNYPTQLVL---LTSQIVWSTQVDQALGGGTLQQSKIQEQL 482
Query: 253  EHLEQLKDGL--EACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKF 310
            + +EQ    +     +  LQD    KR  F        + L++ L        Q    K 
Sbjct: 483  QSIEQTTQMILNNLADSVLQDLSAQKRKKF--------EHLITELVHQRDVVRQLQKCK- 533
Query: 311  AAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYE 370
               +   ++F W   +RYY+  +  +    LVI              +M  N +F YG+E
Sbjct: 534  --NLTGNKDFDWLYHMRYYYDATQENVLHKLVI--------------HMA-NATFYYGFE 576
Query: 371  YMGLNGRLVITPLTDRIYLTITQALSMRLGAAP--------------------------- 403
            Y+G+  RLV TPLTDR YLT+TQAL  R+G  P                           
Sbjct: 577  YLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFC 636
Query: 404  --AGMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQF 461
               G D  A  +I  GL QCGAWGCFDEFNR++  +LS +S Q+ TI+ AL  N+   + 
Sbjct: 637  CDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVEL 696
Query: 462  -EGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFL 520
              G +I ++  +GIF+TMNPGYAGR+ LP+++K LFR +  I PD E+I Q+ML+S+GF 
Sbjct: 697  LGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFK 756
Query: 521  EAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLE--------- 571
             A+VLA K+  L+KL +EQLS Q HYDFG+RALKSVLV AG +KR     +         
Sbjct: 757  TAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAES 816
Query: 572  -----------ESVVLMRALRDMNLPKFVSED---------------------------- 592
                       E  VL+ ++ D  +PK V++D                            
Sbjct: 817  KTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKK 876
Query: 593  -------------------VVQMYETMLTRHSTMIVGPTGGGKS----VVINALVKTSTV 629
                               ++Q+++ +   H  M+VGP+GGGK+    V + A+ +   +
Sbjct: 877  IQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNI 936
Query: 630  LGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD 689
                +  + ++PKA++  +L+G L+  TR+W DGL +   R +   +   S +R +I+FD
Sbjct: 937  ---KSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFD 993
Query: 690  GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQ 734
            GDVD  W+EN+NS++DDNK+LTL NGER+ L  + +++FE+  ++
Sbjct: 994  GDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLK 1038

>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367

Iteration: 1
 Score =  329 bits (843), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 213/645 (33%), Positives = 324/645 (50%), Gaps = 142/645 (22%)
Query: 199  KKFNTVLIVDVHAR--EIKDNFIGSNSLSRSLESVIMWETHKNPRV----IEQCLVPNRL 252
            + FN V + D H++  E  DN+     L   L S I+W T  +  +    ++Q  +  +L
Sbjct: 427  QHFNQVDVND-HSKYSEWVDNYPTQLVL---LTSQIVWSTQVDQALGGGTLQQSKIQEQL 482
Query: 253  EHLEQLKDGL--EACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKF 310
            + +EQ    +     +  LQD    KR  F        + L++ L        Q    K 
Sbjct: 483  QSIEQTTQMILNNLADSVLQDLSAQKRKKF--------EHLITELVHQRDVVRQLQKCK- 533
Query: 311  AAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYE 370
               +   ++F W   +RYY+  +  +    LVI              +M  N +F YG+E
Sbjct: 534  --NLTGNKDFDWLYHMRYYYDATQENVLHKLVI--------------HMA-NATFYYGFE 576
Query: 371  YMGLNGRLVITPLTDRIYLTITQALSMRLGAAP--------------------------- 403
            Y+G+  RLV TPLTDR YLT+TQAL  R+G  P                           
Sbjct: 577  YLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFC 636
Query: 404  --AGMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQF 461
               G D  A  +I  GL QCGAWGCFDEFNR++  +LS +S Q+ TI+ AL  N+   + 
Sbjct: 637  CDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVEL 696
Query: 462  -EGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFL 520
              G +I ++  +GIF+TMNPGYAGR+ LP+++K LFR +  I PD E+I Q+ML+S+GF 
Sbjct: 697  LGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFK 756
Query: 521  EAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLE--------- 571
             A+VLA K+  L+KL +EQLS Q HYDFG+RALKSVLV AG +KR     +         
Sbjct: 757  TAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAES 816
Query: 572  -----------ESVVLMRALRDMNLPKFVSED---------------------------- 592
                       E  VL+ ++ D  +PK V++D                            
Sbjct: 817  KTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKK 876
Query: 593  -------------------VVQMYETMLTRHSTMIVGPTGGGKS----VVINALVKTSTV 629
                               ++Q+++ +   H  M+VGP+GGGK+    V + A+ +   +
Sbjct: 877  IQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNI 936
Query: 630  LGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD 689
                +  + ++PKA++  +L+G L+  TR+W DGL +   R +   +   S +R +I+FD
Sbjct: 937  ---KSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFD 993
Query: 690  GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQ 734
            GDVD  W+EN+NS++DDNK+LTL NGER+ L  + +++FE+  ++
Sbjct: 994  GDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLK 1038

>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486

Iteration: 1
 Score =  205 bits (521), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 219/485 (45%), Gaps = 94/485 (19%)
Query: 322 WESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVIT 381
           W    ++Y K   LD  +S+ I Q       GY           +Y +EY+G+  RL+ T
Sbjct: 365 WAKVQKFYQKNDTLDDLNSVFISQS------GY---------LLQYKFEYIGIPERLIYT 409
Query: 382 PLTDRIYLTITQALSMRLGA---APAG--------------------------MDFLAFG 412
           PL    + T+T +L  + G     PAG                           D+    
Sbjct: 410 PLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLS 469
Query: 413 KILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKV 472
           ++L G++Q GAWGCFDEFNR+D  VLS +S  +  I+  L +  +       +  ++   
Sbjct: 470 RLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHT 529
Query: 473 GIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVL 532
            +FIT+NPGY GR+ELPE++K  FR      P    I +++L   GF ++K LA K+   
Sbjct: 530 AVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHF 589
Query: 533 YKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSED 592
            +L   + S   HY FG+R LK VL     L     + E++VV   +L+ + LP     D
Sbjct: 590 LELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVV--ESLKRVILPSLGDTD 647
Query: 593 ----------------------------------------------VVQMYETMLTRHST 606
                                                          +Q Y    T+ + 
Sbjct: 648 ELVFKDELSKIFDSAGTPLNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQAL 707
Query: 607 MIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLL 665
           ++VG  G GK+     ++    +  G+    Y ++ K ++   LYG +   T +W DGL 
Sbjct: 708 ILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLF 767
Query: 666 SNIFRAVNKPLDPGSK-ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHC 724
           ++I R VN  +    K  R +++FD D+D  ++E MNSV+DDNKILTL NGER+ +  + 
Sbjct: 768 TSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNF 827
Query: 725 QLLFE 729
           ++LFE
Sbjct: 828 RILFE 832

>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695

Iteration: 1
 Score =  204 bits (520), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 219/485 (45%), Gaps = 94/485 (19%)
Query: 322  WESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVIT 381
            W    ++Y K   LD  +S+ I Q       GY           +Y +EY+G+  RL+ T
Sbjct: 584  WAKVQKFYQKNDTLDDLNSVFISQS------GY---------LLQYKFEYIGIPERLIYT 628
Query: 382  PLTDRIYLTITQALSMRLGA---APAG--------------------------MDFLAFG 412
            PL    + T+T +L  + G     PAG                           D+    
Sbjct: 629  PLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLS 688
Query: 413  KILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKV 472
            ++L G++Q GAWGCFDEFNR+D  VLS +S  +  I+  L +  +       +  ++   
Sbjct: 689  RLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHT 748
Query: 473  GIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVL 532
             +FIT+NPGY GR+ELPE++K  FR      P    I +++L   GF ++K LA K+   
Sbjct: 749  AVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHF 808
Query: 533  YKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSED 592
             +L   + S   HY FG+R LK VL     L     + E++VV   +L+ + LP     D
Sbjct: 809  LELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVV--ESLKRVILPSLGDTD 866
Query: 593  ----------------------------------------------VVQMYETMLTRHST 606
                                                           +Q Y    T+ + 
Sbjct: 867  ELVFKDELSKIFDSAGTPLNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQAL 926
Query: 607  MIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLL 665
            ++VG  G GK+     ++    +  G+    Y ++ K ++   LYG +   T +W DGL 
Sbjct: 927  ILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLF 986
Query: 666  SNIFRAVNKPLDPGSK-ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHC 724
            ++I R VN  +    K  R +++FD D+D  ++E MNSV+DDNKILTL NGER+ +  + 
Sbjct: 987  TSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNF 1046
Query: 725  QLLFE 729
            ++LFE
Sbjct: 1047 RILFE 1051

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	741
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	0.0
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	3e-26
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	1e-18
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	4e-06
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	1e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-177
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	7e-26
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	5e-22
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	9e-07
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score =  636 bits (1643), Expect = 0.0
 Identities = 135/497 (27%), Positives = 213/497 (42%), Gaps = 94/497 (18%)

Query: 312  AKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEY 371
                +     W    ++Y K   LD  +S+ I Q                    +Y +EY
Sbjct: 574  CSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQS---------------GYLLQYKFEY 618

Query: 372  MGLNGRLVITPLTDRIYLTITQALSMRLGAAPAG-------------------------- 405
            +G+  RL+ TPL    + T+T +L  + G    G                          
Sbjct: 619  IGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNC 678

Query: 406  ---MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFE 462
                D+    ++L G++Q GAWGCFDEFNR+D  VLS +S  +  I+  L +  +     
Sbjct: 679  DDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLL 738

Query: 463  GHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEA 522
              +  ++    +FIT+NPGY GR+ELPE++K  FR      P    I +++L   GF ++
Sbjct: 739  EEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDS 798

Query: 523  KVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRD 582
            K LA K+    +L   + S   HY FG+R LK VL     L       E    ++ +L+ 
Sbjct: 799  KSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISE--FGEGEKTVVESLKR 856

Query: 583  MNLPKFVSED----------------------------------------------VVQM 596
            + LP     D                                               +Q 
Sbjct: 857  VILPSLGDTDELVFKDELSKIFDSAGTPLNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQF 916

Query: 597  YETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNP 655
            Y    T+ + ++VG  G GK+     ++    +  G+    Y ++ K ++   LYG +  
Sbjct: 917  YYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLK 976

Query: 656  ETRDWYDGLLSNIFRAVNKPLDPGSK-ERKYILFDGDVDALWIENMNSVMDDNKILTLAN 714
             T +W DGL ++I R VN  +    K  R +++FD D+D  ++E MNSV+DDNKILTL N
Sbjct: 977  ATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPN 1036

Query: 715  GERIRLLAHCQLLFEIH 731
            GER+ +  + ++LFE  
Sbjct: 1037 GERLPIPPNFRILFETD 1053

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score =  115 bits (289), Expect = 3e-26
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 232 IMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDEL 291
           I     +    IE   +PN    L+   D L+  + SL  +L  +R  FPRF+F+ +D+L
Sbjct: 342 ITTRAFQLDTTIEVIHIPNFDTTLKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDL 401

Query: 292 LSILGSSS-PTAIQEHIVK 309
           L I+GS      + + + K
Sbjct: 402 LKIIGSGKHHDQVSKFMKK 420

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score = 90.3 bits (224), Expect = 1e-18
 Identities = 18/163 (11%), Positives = 45/163 (27%), Gaps = 39/163 (23%)

Query: 1   MDFRTPQLTFG--EIEQWMTRVLDEMMT----------ENLVCSCQMTEWMLDNIGMTVL 48
           ++           + ++W+  +  E+              +     +   +   I   +L
Sbjct: 446 LNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEVVVSKYIFQAIL 505

Query: 49  AANGVWWTAEVENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKKFNTVL 108
            +  V WT  VE                Y    + ++  L+ K+                
Sbjct: 506 LSAQVMWTELVEKCLQT------NQFSKYWKEVDMKIKGLLDKLN--------------- 544

Query: 109 IVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDSLSPRS 151
                 + + N +KK   +L+  +H  ++I       +     
Sbjct: 545 ------KSSDNVKKKIEALLVEYLHFNNVIGQLKNCSTKEEAR 581

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 24/148 (16%), Positives = 40/148 (27%), Gaps = 22/148 (14%)

Query: 474  IFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQI--------MLFSEGFLE-AKV 524
            +     P   GR  + E        +    P  + + QI              F    + 
Sbjct: 1388 VGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEP 1447

Query: 525  LAKKMAVLYKLSKEQLS--KQCHYDFGMRALKSVLVMAGELKRAALQLEESVVL------ 576
             A+    LY   K + S   Q HY F  R L  ++           +     ++      
Sbjct: 1448 FARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYE 1507

Query: 577  -MRALRDMNLPKFVSEDVVQMYETMLTR 603
              R   D    + V       +E +L  
Sbjct: 1508 AWRIFAD----RLVGVKEKNSFEQLLYE 1531

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 155 GELTKNDRKKFNTVLIVDVHARDIIDNFVRDGS 187
            + + N +KK   +L+  +H  ++I       +
Sbjct: 544 NKSSDNVKKKIEALLVEYLHFNNVIGQLKNCST 576

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score =  562 bits (1449), Expect = e-177
 Identities = 182/523 (34%), Positives = 272/523 (52%), Gaps = 113/523 (21%)

Query: 313  KIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYM 372
             +   ++F W   +RYY+  +  +    LVI                  N +F YG+EY+
Sbjct: 534  NLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMA---------------NATFYYGFEYL 578

Query: 373  GLNGRLVITPLTDRIYLTITQALSMRLGAAPAG--------------------------- 405
            G+  RLV TPLTDR YLT+TQAL  R+G  P G                           
Sbjct: 579  GIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCD 638

Query: 406  --MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQ-FE 462
               D  A  +I  GL QCGAWGCFDEFNR++  +LS +S Q+ TI+ AL  N+   +   
Sbjct: 639  EGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLG 698

Query: 463  GHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEA 522
            G +I ++  +GIF+TMNPGYAGR+ LP+++K LFR +  I PD E+I Q+ML+S+GF  A
Sbjct: 699  GKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTA 758

Query: 523  KVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQ------------- 569
            +VLA K+  L+KL +EQLS Q HYDFG+RALKSVLV AG +KR                 
Sbjct: 759  EVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKT 818

Query: 570  -------LEESVVLMRALRDMNLPKFVSEDV----------------------------- 593
                     E  VL+ ++ D  +PK V++D+                             
Sbjct: 819  KADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQ 878

Query: 594  ------------------VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPA 634
                              +Q+++ +   H  M+VGP+GGGK+      ++    +    +
Sbjct: 879  EIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKS 938

Query: 635  RTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDA 694
              + ++PKA++  +L+G L+  TR+W DGL +   R +   +   S +R +I+FDGDVD 
Sbjct: 939  EAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDP 998

Query: 695  LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDS 737
             W+EN+NS++DDNK+LTL NGER+ L  + +++FE+  ++  +
Sbjct: 999  EWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYAT 1041

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score =  113 bits (285), Expect = 7e-26
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 232 IMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDEL 291
           I+ +    P ++E   +    + +E+L D L   +K+L +YL  +R+AF RF+F+ D++L
Sbjct: 283 ILKKVSGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDL 342

Query: 292 LSILGSSS-PTAIQEHIVK 309
           L I+G+S     IQ+H  K
Sbjct: 343 LEIIGNSKDIIKIQKHFRK 361

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score =  101 bits (253), Expect = 5e-22
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 40/166 (24%)

Query: 1   MDFRTPQLT--FGEIEQWMTRVLDEMM---------------TENLVCSCQMTEWMLDNI 43
           + F+ P       +I +W+T V  EM                  ++    + +EW+ +  
Sbjct: 389 VTFKKPISIANGPKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYP 448

Query: 44  GMTVLAANGVWWTAEVENVFAKIRAGNDR---AMKDYLGAQNAQLDALVVKVRGELTKND 100
              VL  + + W+ +V+           +    ++         L+ L   V  +L+   
Sbjct: 449 TQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQK 508

Query: 101 RKKFNTVLIVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDS 146
           RKKF   LI +                    VH RD++       +
Sbjct: 509 RKKFEH-LITE-------------------LVHQRDVVRQLQKCKN 534

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 51.8 bits (124), Expect = 9e-07
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 149 PRSVVRGELTKNDRKKFNTVLIVDVHARDIIDNFVR 184
               V  +L+   RKKF  ++   VH RD++    +
Sbjct: 496 LADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQK 531

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 189 VRGELTKNDRKKFNTVLIVDVHAREIKDNFI 219
           V  +L+   RKKF  ++   VH R++     
Sbjct: 500 VLQDLSAQKRKKFEHLITELVHQRDVVRQLQ 530

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 82.2 bits (202), Expect = 4e-16
 Identities = 52/379 (13%), Positives = 106/379 (27%), Gaps = 106/379 (27%)

Query: 44  GM-----TVLAA-------------NGVWWTAEVENVFAKIRAGNDRAMKDYLGAQNAQL 85
           G+     T +A                ++W          +   N  + +  L      L
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFW----------LNLKNCNSPETVL----EML 202

Query: 86  DALVVKVRGELTKNDRKKFNTVL-IVDVRGELTKN-DRKKFNTVLIV--DVHARDIIDNF 141
             L+ ++    T       N  L I  ++ EL +    K +   L+V  +V      + F
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 142 -IGSDSLSPRSVVRGELTKNDRKKFNTVLIVDVHARDIIDNFVRDGSAVRGELTKNDRKK 200
            +    L         LT   ++  + +         I  +           LT ++ K 
Sbjct: 263 NLSCKIL---------LTTRFKQVTDFL--SAATTTHISLDHHSMT------LTPDEVKS 305

Query: 201 -FNTVLIVDVHAREIKDNFIGSNSLSRSLESVIMWETHKNPRVIEQCLV-------PNRL 252
                L                  L R + +        NPR +   ++           
Sbjct: 306 LLLKYLDCRP------------QDLPREVLTT-------NPRRL--SIIAESIRDGLATW 344

Query: 253 EH-----LEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDD-----ELLSILGSSSPTA 302
           ++      ++L   +E+    L+    + R  F R             LLS++      +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 303 IQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSL--------VIIQCSGSFEYGY 354
               +V    K    E  +   +        YL+ K  L         I+    +    +
Sbjct: 403 DVMVVVNKLHKYSLVE--KQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTF 459

Query: 355 EHEYMGLNGSFEYGYEYMG 373
           + + +      +Y Y ++G
Sbjct: 460 DSDDLIPPYLDQYFYSHIG 478

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 6e-12
 Identities = 100/672 (14%), Positives = 199/672 (29%), Gaps = 184/672 (27%)

Query: 1   MDFRTP--QLTFGEIEQWMTRVLDEMMTENLVCSCQMTEWMLDNIGMTVLAANGVWWTAE 58
           MDF T   Q  + +I      V ++   +N    C+  + M  +I ++           E
Sbjct: 7   MDFETGEHQYQYKDILS----VFEDAFVDNF--DCKDVQDMPKSI-LS---------KEE 50

Query: 59  VENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVRGELTKNDR--KKF-NTVLIVD---V 112
           ++++   I + +  +    L         L       L+K +   +KF   VL ++   +
Sbjct: 51  IDHI---IMSKDAVSGTLRL------FWTL-------LSKQEEMVQKFVEEVLRINYKFL 94

Query: 113 RGELTKNDRKK-FNTVLIVDVHARDIIDNFIGSDSLSPRSVVRGELTKNDRKKFN----- 166
              +    R+    T + ++   RD + N   +   +  +V R +     R+        
Sbjct: 95  MSPIKTEQRQPSMMTRMYIE--QRDRLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 167 -------------TVLIVDVHARD--IIDNF------VRDGSAVRGELTKNDRKKFNTVL 205
                        T + +DV      +          +   +    E      +K    +
Sbjct: 151 KNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 206 IVDVHARE--IKDNFIGSNSLSRSLESVIMWETHKN----------PRVIE----QC--L 247
             +  +R     +  +  +S+   L  ++  + ++N           +        C  L
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 248 VPNRLEHLEQLKDGLEACEKSLQDY---LTDK--RNAFPRFFFISDDELLSILGSSSPTA 302
           +  R + +            SL  +   LT    ++   ++      +L   + +++P  
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 303 IQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLN 362
           +       A  I D     W+      WK      K + +I     S       EY  + 
Sbjct: 330 LS----IIAESIRDGLA-TWD-----NWKH-VNCDKLTTII---ESSLNVLEPAEYRKM- 374

Query: 363 GSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAGMDFLAFGKILSGLSQCG 422
                 ++      RL + P     ++  T  LS+ +       D +     L   S   
Sbjct: 375 ------FD------RLSVFP--PSAHIP-TILLSL-IWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 423 AWGCFDEFNRIDVSVLSVISTQLLTIRTAL---LINATRFQ--FEGHDIIMNNKVGIF-- 475
                 E   I +  + +     L    AL   +++       F+  D+I       F  
Sbjct: 419 KQP--KES-TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 476 -ITMNPGY----AGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMA 530
            I    G+        E     + +F        DF            FLE K+     A
Sbjct: 476 HI----GHHLKNIEHPERMTLFRMVFL-------DF-----------RFLEQKIRHDSTA 513

Query: 531 ---------VLYKLS--KEQLSKQC-HYDFGMRALKSVLVMAGE---------LKRAALQ 569
                     L +L   K  +      Y+  + A+   L    E         L R AL 
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573

Query: 570 LEESVVLMRALR 581
            E+  +   A +
Sbjct: 574 AEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 1e-07
 Identities = 74/555 (13%), Positives = 156/555 (28%), Gaps = 202/555 (36%)

Query: 252 LEHLEQ-LKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPT--------- 301
           L   E    D  + C K +QD     ++        S +E+  I+ S             
Sbjct: 22  LSVFEDAFVDNFD-C-KDVQDMP---KSIL------SKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 302 --AIQEHIVKFAAKIMDAEEFQW-ESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEY 358
             + QE +V+   + +    +++  S ++   ++  +  +             Y  + + 
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR------------MYIEQRDR 118

Query: 359 MGLNGSFEYGYEYMGLNGRLVITPLT-DRI--YLTITQALSMRLGAAPA----GMDFLAF 411
           +               N   V       R+  YL + QAL + L  A      G+  L  
Sbjct: 119 L--------------YNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGV--LGS 161

Query: 412 GKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGH------- 464
           GK                      + ++     L    +  +    +  F+         
Sbjct: 162 GK----------------------TWVA-----LDVCLSYKVQ--CKMDFKIFWLNLKNC 192

Query: 465 ---DIIMNNKVGIFITMNPGYAGRTELP-------ESVKALFRPV--------------- 499
              + ++     +   ++P +  R++          S++A  R +               
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 500 VC---IVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSV 556
           V        F L C+I+          +  +   V               DF   A  + 
Sbjct: 253 VQNAKAWNAFNLSCKIL----------LTTRFKQVT--------------DFLSAATTTH 288

Query: 557 LVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGK 616
           + +  +     L  +E   L        L K++      +   +LT +   +        
Sbjct: 289 ISL--DHHSMTLTPDEVKSL--------LLKYLDCRPQDLPREVLTTNPRRL-------- 330

Query: 617 SVVINALVKTSTVLGYPART----YTLNPKAVSVIEL-YGVLNP-ETRDWYDGLLSNIFR 670
             +I   ++        A      +    K  ++IE    VL P E R  +D L  ++F 
Sbjct: 331 -SIIAESIR-----DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFP 382

Query: 671 A-VNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQ---L 726
              + P          +L       +W +     +  + ++ + N      L   Q    
Sbjct: 383 PSAHIPTI--------LL-----SLIWFD-----VIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 727 LFEIHPIQSDSHPRR 741
              I  I  +   + 
Sbjct: 425 TISIPSIYLELKVKL 439

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	741
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	100.0
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	100.0
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	99.91
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	99.84
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.53
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.05
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.05
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.45
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.44
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.38
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.32
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.13
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.13
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.12
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.12
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.11
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.1
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.88
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.86
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.85
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.81
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.74
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.67
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	96.63
3co5_A	143	Putative two-component system transcriptional RES	96.61
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.54
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.51
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.5
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.49
3f8t_A	506	Predicted ATPase involved in replication control,	96.43
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.38
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.35
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.34
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.34
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.31
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.3
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.28
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.13
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.1
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.1
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.95
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.91
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.9
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.87
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.85
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.83
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.81
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.8
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.79
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.79
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.76
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.76
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.72
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.68
3bos_A	242	Putative DNA replication factor; P-loop containing	95.67
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	95.66
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.66
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.6
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.59
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.57
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.57
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.56
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.56
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.54
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.52
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.51
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.48
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.46
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.44
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.43
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.42
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.4
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.37
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.35
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.33
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.31
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.29
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	95.25
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.25
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.24
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.23
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	95.22
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.21
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.19
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.18
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.18
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.16
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.14
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.13
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.12
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.12
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.11
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.09
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.07
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.06
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.05
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.05
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.02
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.0
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.0
3pvs_A	447	Replication-associated recombination protein A; ma	94.99
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	94.99
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.98
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	94.98
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.97
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	94.97
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.95
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.92
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.89
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	94.87
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	94.86
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.84
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.84
1via_A	175	Shikimate kinase; structural genomics, transferase	94.83
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.83
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.83
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	94.82
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.82
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	94.82
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	94.8
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	94.79
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	94.78
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.77
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.76
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.73
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.71
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.71
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.7
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	94.7
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.68
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.67
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.66
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	94.65
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.53
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.52
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	94.51
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.45
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	94.43
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.41
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.38
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	94.38
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.37
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.31
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.3
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.3
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.29
2vli_A	183	Antibiotic resistance protein; transferase, tunica	94.26
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.26
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.25
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.24
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.23
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.2
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.18
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	94.16
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.14
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	94.14
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.08
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	94.08
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	94.07
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	94.04
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.04
2qgz_A	308	Helicase loader, putative primosome component; str	94.03
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.02
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	94.02
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	93.98
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	93.96
1tue_A	212	Replication protein E1; helicase, replication, E1E	93.93
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	93.91
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	93.9
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.89
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	93.83
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	93.82
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	93.79
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	93.78
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	93.75
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	93.71
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	93.7
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	93.7
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	93.69
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	93.69
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	93.68
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.67
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.64
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	93.55
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.53
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	93.47
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	93.46
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	93.46
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	93.46
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	93.42
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	93.4
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	93.4
4a74_A	231	DNA repair and recombination protein RADA; hydrola	93.39
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	93.38
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	93.36
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.33
1p9r_A	418	General secretion pathway protein E; bacterial typ	93.25
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	93.23
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	93.22
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.21
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	93.21
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	93.17
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	93.17
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	93.16
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	93.14
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	93.13
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	93.1
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	93.06
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	93.04
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	93.04
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.03
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.0
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	93.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	92.99
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	92.97
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	92.97
2og2_A	359	Putative signal recognition particle receptor; nuc	92.96
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	92.92
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	92.91
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	92.88
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	92.86
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	92.85
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	92.83
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	92.8
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	92.66
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	92.6
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	92.54
1sgw_A	214	Putative ABC transporter; structural genomics, P p	92.54
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	92.53
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	92.52
1b0u_A	262	Histidine permease; ABC transporter, transport pro	92.5
1g6h_A	257	High-affinity branched-chain amino acid transport	92.47
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	92.45
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	92.44
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	92.44
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	92.42
1ji0_A	240	ABC transporter; ATP binding protein, structural g	92.41
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	92.38
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	92.36
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	92.36
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	92.35
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	92.29
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	92.26
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	92.24
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	92.24
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	92.23
2ghi_A	260	Transport protein; multidrug resistance protein, M	92.21
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	92.19
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	92.16
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	92.16
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	92.12
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	92.11
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	92.1
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	92.1
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	92.1
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	92.06
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	92.04
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	92.01
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	91.98
2wji_A	165	Ferrous iron transport protein B homolog; membrane	91.96
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	91.91
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	91.87
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	91.85
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	91.84
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	91.83
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	91.81
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	91.8
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	91.8
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	91.79
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	91.78
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	91.76
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	91.72
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	91.71
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	91.71
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	91.7
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	91.69
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	91.66
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	91.63
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	91.63
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	91.62
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	91.62
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	91.62
2ged_A	193	SR-beta, signal recognition particle receptor beta	91.6
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	91.58
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	91.57
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	91.54
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	91.51
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	91.51
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	91.44
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	91.42
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	91.41
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	91.41
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	91.38
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	91.37
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	91.36
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	91.35
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	91.34
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	91.33
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	91.33
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	91.3
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	91.3
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	91.29
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	91.28
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	91.28
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	91.27
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	91.26
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	91.26
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	91.24
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	91.2
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	91.16
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	91.1
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	91.09
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	91.08
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	91.08
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	91.04
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	91.01
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	91.01
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	90.96
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	90.88
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	90.87
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	90.86
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	90.84
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	90.83
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	90.79
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	90.79
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	90.78
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	90.78
1nrj_B	218	SR-beta, signal recognition particle receptor beta	90.77
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	90.74
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	90.73
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	90.68
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	90.66
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	90.63
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	90.62
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	90.62
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	90.61
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	90.6
2cvh_A	220	DNA repair and recombination protein RADB; filamen	90.56
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	90.54
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	90.5
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	90.49
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	90.47
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	90.44
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	90.44
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	90.42
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	90.4
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	90.38
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	90.35
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	90.35
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	90.31
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	90.25
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	90.19
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	90.18
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	90.13
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	90.13
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	90.09
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	90.09
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	90.09
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	90.05
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	90.05
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	90.04
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	90.03
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	90.03
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	90.01
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	89.95
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	89.87
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	89.81
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	89.8
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	89.77
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	89.77
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	89.75
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	89.75
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	89.73
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	89.7
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	89.65
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	89.61
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	89.6
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	89.59
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	89.58
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	89.58
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	89.54
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	89.54
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	89.54
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	89.52
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	89.48
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	89.44
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	89.43
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	89.42
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	89.39
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	89.39
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	89.32
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	89.27
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	89.21
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	89.2
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	89.19
2xxa_A	433	Signal recognition particle protein; protein trans	89.16
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	89.11
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	89.09
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	89.07
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	89.06
2fna_A	357	Conserved hypothetical protein; structural genomic	89.05
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	89.02
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	89.01
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	89.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	88.98
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	88.97
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	88.97
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	88.97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	88.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	88.95
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	88.95
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	88.92
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	88.89
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	88.85
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	88.85
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	88.83
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	88.75
2hf9_A	226	Probable hydrogenase nickel incorporation protein	88.73
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	88.73
2fh5_B	214	SR-beta, signal recognition particle receptor beta	88.71
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	88.68
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	88.67
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	88.64
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	88.63
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	88.6
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	88.57
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	88.55
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	88.52
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	88.48
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	88.41
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	88.29
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	88.21
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	88.18
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	88.14
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	88.14
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	88.12
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	88.08
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	88.06
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	87.99
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	87.95
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	87.95
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	87.94
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	87.85
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	87.83
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	87.77
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	87.7
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	87.66
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	87.62
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	87.59
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	87.58
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	87.4
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	87.35
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	87.34
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	87.26
3llu_A	196	RAS-related GTP-binding protein C; structural geno	87.25
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	87.06
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	86.99
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	86.92
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	86.86
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	86.82
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	86.79
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	86.73
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	86.68
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	86.66
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	86.65
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	86.59
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	86.59
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	86.58
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	86.57
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	86.49
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	86.41
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	86.35
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	86.24
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	86.19
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	86.13
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	86.05
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	86.04
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	85.97
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	85.87
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	85.81
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	85.69
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	85.64
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	85.62
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	85.46
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	85.34
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	85.33
3bor_A	237	Human initiation factor 4A-II; translation initiat	85.22
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	85.19
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	85.11
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	85.1
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	85.06
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	85.06
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	85.03
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	85.02
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	84.97
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	84.94
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	84.92
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	84.83
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	84.78
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	84.78

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=100.00  E-value=4e-144  Score=1399.15  Aligned_cols=550  Identities=40%  Similarity=0.716  Sum_probs=508.8

Q ss_pred             hhhccccccccceEE-----EEccchHHHHHHHHhcchhhhhccchhhhhhcccchhhhhhhhhhhccccccccchhhhH
Q psy17620        155 GELTKNDRKKFNTVL-----IVDVHARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLE  229 (741)
Q Consensus       155 ~Qlr~yw~~~~~~~~-----~idv~~r~vye~~~~~~~~~~~~~~~~e~~~f~~~~~v~~~w~~~~~~f~~~~~~~~~~~  229 (741)
                      ++--..|+.++..+.     |++||.+|+|.+-+|.+++||++|||.|+++|+.   ||+.|+.                
T Consensus       222 ~~~v~~We~~L~~~~~il~~W~~vQ~~W~yLe~IF~~s~DI~~qLP~E~~rF~~---vd~~~~~----------------  282 (3245)
T 3vkg_A          222 EEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKS---INSEFIA----------------  282 (3245)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CTTTSHHHHHHHHH---HHHHHHH----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHhHHHHHHHHH---HHHHHHH----------------
Confidence            334445655655442     8899999999999999999999999999999999   9999999                


Q ss_pred             HHHHHhhhcCccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccCcHHHHHHhcC-CCchhhhhhHH
Q psy17620        230 SVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGS-SSPTAIQEHIV  308 (741)
Q Consensus       230 ~~im~~~~~~~~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~~yLe~kR~~FPRFyFLsn~dLL~ils~-~~~~~i~~hl~  308 (741)
                        +|+++.++|+|+++|..|++++.|+++++.|+.|||+|++|||+||.+|||||||||+|||+|||+ +||..||+|++
T Consensus       283 --im~~~~~~~~v~~~~~~~~~~~~L~~~~~~Le~iqk~L~~yLE~KR~~FPRFyFlSd~eLLeILs~~~dp~~vq~hl~  360 (3245)
T 3vkg_A          283 --ILKKVSGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKIQKHFR  360 (3245)
T ss_dssp             --HHHHHHHSCBHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHGGGCGGGTGGGGG
T ss_pred             --HHHHHhcCCceEeecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhccCcHHHHHHHHcCCChHHHHHHHH
Confidence              999999999999999999999999999999999999999999999999999999999999999998 69999999999


Q ss_pred             HHhhhc--------------------------------------------------------------------------
Q psy17620        309 KFAAKI--------------------------------------------------------------------------  314 (741)
Q Consensus       309 k~f~~I--------------------------------------------------------------------------  314 (741)
                      |||++|                                                                          
T Consensus       361 K~F~~I~~l~f~~~~~~i~~m~S~eGE~v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~~~~~~~~~  440 (3245)
T 3vkg_A          361 KMFAGLANLTLDDEKTTIIGMSSAEGETVTFKKPISIANGPKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKY  440 (3245)
T ss_dssp             GTCSSCCEEEECTTSCEEEEEECTTSCEEEEEEEEESSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred             HHHhhhheEEecCCCCEEEEEEcCCCCEEEeCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccH
Confidence            986210                                                                          


Q ss_pred             --------------------------------------------------------------------------------
Q psy17620        315 --------------------------------------------------------------------------------  314 (741)
Q Consensus       315 --------------------------------------------------------------------------------  314 (741)
                                                                                                      
T Consensus       441 ~~w~~~~p~Qv~l~~~qi~wT~~ve~al~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~v~~~l~~~~R~kl~~Lit~~V  520 (3245)
T 3vkg_A          441 SEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELV  520 (3245)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcHHHHHHHHHheeHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------CCcChHHHHHHhhhhhcccccCccCceEEEEeccccccccccccccccccccccccccCCCCCce
Q psy17620        315 ---------------MDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLV  379 (741)
Q Consensus       315 ---------------~~~~~f~W~~qLRyy~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~YgyEYlG~~~rLV  379 (741)
                                     .+.++|+|++||||||+++..+..+.|.|++++++|.               |||||+|+++|||
T Consensus       521 H~RDvv~~L~~~~~v~~~~dF~W~~qlRyy~~~~~~~~~~~~~v~~~~~~f~---------------YgyEYlG~~~rLV  585 (3245)
T 3vkg_A          521 HQRDVVRQLQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFY---------------YGFEYLGIGERLV  585 (3245)
T ss_dssp             HHHHHHHHHHTCCSCCSTTCHHHHTSEEEEECSSSSSSGGGEEEEETTEEEE---------------CCCCCCCSCCCCC
T ss_pred             HHHHHHHHHHHhcCCCCcchhHHHhhhheeeccccCCcCceEEEEEcCceec---------------CccccCCCCCCCc
Confidence                           1235799999999999876433334699999887766               9999999999999


Q ss_pred             eccchhHHHHHHHHHHHcccCCCCC-----------------------------CCCHHHHHHHHHHhhhcCcceeeccc
Q psy17620        380 ITPLTDRIYLTITQALSMRLGAAPA-----------------------------GMDFLAFGKILSGLSQCGAWGCFDEF  430 (741)
Q Consensus       380 iTPLTdRc~~tl~~Al~~~~GGap~-----------------------------~~d~~~~~ri~~Glaq~GaW~cfDEf  430 (741)
                      +||||||||+||++||++++||+|+                             ++||++|||||+|+|++|||+|||||
T Consensus       586 iTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEf  665 (3245)
T 3vkg_A          586 QTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEF  665 (3245)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETT
T ss_pred             CChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhh
Confidence            9999999999999999999999865                             68999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHhhcCceeEee-cceEEecCCceEEEeccCCCCCCCCchHHHhhcceeeeccCCCHHHH
Q psy17620        431 NRIDVSVLSVISTQLLTIRTALLINATRFQFE-GHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELI  509 (741)
Q Consensus       431 nrl~~~vLSvva~qi~~I~~al~~~~~~~~~~-g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRpvam~~PD~~~I  509 (741)
                      ||++.+|||++++||++|+.|++++..++.|+ |++|.++|+|+|||||||||+||++||+|||++||||+|++||+++|
T Consensus       666 Nrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i  745 (3245)
T 3vkg_A          666 NRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMI  745 (3245)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHH
Confidence            99999999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccccchhhHHHHHHHhhHhHhhh--------cc------------
Q psy17620        510 CQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAA--------LQ------------  569 (741)
Q Consensus       510 ~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hydfgLRalksVL~~a~~l~~~~--------~~------------  569 (741)
                      +||+|+|.||.+|+.||+|++++|++|+||||+|+||||||||+|+||++||++||+.        |+            
T Consensus       746 ~ei~L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lkr~~~~~~~~~~~~~~~~~~~~~~~~  825 (3245)
T 3vkg_A          746 AQVMLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYC  825 (3245)
T ss_dssp             HHHHHHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHHHSCCCC------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHhhhhhccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999987        54            


Q ss_pred             chHHHHHHHHHHhccCCCcchhh-----------------------------------------------HHHHHHHhhc
Q psy17620        570 LEESVVLMRALRDMNLPKFVSED-----------------------------------------------VVQMYETMLT  602 (741)
Q Consensus       570 ~~E~~~l~ral~~~~lPkl~~~D-----------------------------------------------v~qL~e~l~~  602 (741)
                      .+|+.+|+|||+|+|+|||+.+|                                               |+||||++.+
T Consensus       826 ~~E~~illralrd~nlpKl~~~D~plF~~li~DlFPgv~~~~~~~~~l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~v  905 (3245)
T 3vkg_A          826 QYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNI  905 (3245)
T ss_dssp             HHHHHHHHHHHHHTTTTTSCGGGHHHHHHHHHHHSTTCCCCCCCCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHhccCCCchhhHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHh
Confidence            67999999999999999999998                                               8999999999


Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccC-CCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      |||||||||||||||++|++|++|++.+ |.++..++|||||+|++||||.+||+|+||+||+|++++|+++.+..++..
T Consensus       906 RhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~  985 (3245)
T 3vkg_A          906 NHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGEST  985 (3245)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGG
T ss_pred             eeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchhhhceeecCCCCeeeccHHHHHHHHHHhcccCCCC
Confidence            9999999999999999999999999988 567889999999999999999999999999999999999999765444456


Q ss_pred             CCeEEEEcCCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCCCCCCCCC
Q psy17620        682 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDSHPR  740 (741)
Q Consensus       682 ~~~WIVfDG~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L~~aSPAt  740 (741)
                      .++||||||||||.|||||||||||||+|||||||||++||+||+||||+||++|||||
T Consensus       986 ~~~WIvfDGpVDa~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liFEv~dL~~ASPAT 1044 (3245)
T 3vkg_A          986 KRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLAT 1044 (3245)
T ss_dssp             EEEEEEEESCCCHHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEEEEESCCTTCCHHH
T ss_pred             CceEEEECCCCCHHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEEEEeccccccChhh
Confidence            78999999999999999999999999999999999999999999999999999999998

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=100.00  E-value=1.1e-128  Score=1253.05  Aligned_cols=548  Identities=30%  Similarity=0.516  Sum_probs=511.6

Q ss_pred             hhhccccccccceEE-----EEccchHHHHHHHHhcchhhhhccchhhhhhcccchhhhhhhhhhhccccccccchhhhH
Q psy17620        155 GELTKNDRKKFNTVL-----IVDVHARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLE  229 (741)
Q Consensus       155 ~Qlr~yw~~~~~~~~-----~idv~~r~vye~~~~~~~~~~~~~~~~e~~~f~~~~~v~~~w~~~~~~f~~~~~~~~~~~  229 (741)
                      ++.-..|.+++..+.     |++||.+|+|.+-+|.+++||++|||.|+++|+.   ||+.|+.                
T Consensus       281 ~~~~~~w~~~L~~~~~~l~~w~~vQ~~W~yLe~iF~~s~di~~qLp~e~~~F~~---vd~~~~~----------------  341 (2695)
T 4akg_A          281 EQDCLDLESKLTKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKS---LTSEYKM----------------  341 (2695)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHCHHHHHHHHH---HHHHHHH----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcHHHHHHhHHHHHHHHH---HHHHHHH----------------
Confidence            444445655655442     8899999999999998889999999999999999   9999999                


Q ss_pred             HHHHHhhhcCccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccCcHHHHHHhcC-CCchhhhhhHH
Q psy17620        230 SVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGS-SSPTAIQEHIV  308 (741)
Q Consensus       230 ~~im~~~~~~~~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~~yLe~kR~~FPRFyFLsn~dLL~ils~-~~~~~i~~hl~  308 (741)
                        ||+++.++|+|+++|..|++++.|+++++.|+.|||+|++|||+||.+|||||||||+|||+|||+ +||..||+|++
T Consensus       342 --im~~~~~~~~v~~~~~~~~~~~~L~~~~~~Le~iqk~L~~yLe~KR~~FPRFyFlsd~eLLeiLs~~~dp~~vq~hl~  419 (2695)
T 4akg_A          342 --ITTRAFQLDTTIEVIHIPNFDTTLKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMK  419 (2695)
T ss_dssp             --HHHHHHTTCCSGGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHCHHHHHHHHHTTTTSGGGHHHHH
T ss_pred             --HHHHHHhCCCeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceecCcHHHHHHHhcCCCHHHHHHHHH
Confidence              999999999999999999999999999999999999999999999999999999999999999998 79999999999


Q ss_pred             HHhhhc--------------------------------------------------------------------------
Q psy17620        309 KFAAKI--------------------------------------------------------------------------  314 (741)
Q Consensus       309 k~f~~I--------------------------------------------------------------------------  314 (741)
                      |||++|                                                                          
T Consensus       420 k~F~~i~~l~f~~~~i~~m~s~egE~v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~~~~~~w~~~~  499 (2695)
T 4akg_A          420 KMFGSIESIIFLEDFITGVRSVEGEVLNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEVVVSKY  499 (2695)
T ss_dssp             HHTSSEEEEEECSSEEEEEEETTSCEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTTS
T ss_pred             HHhhhhhhEEecCceEEEEEcCCCCEEEeCCceecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHC
Confidence            997311                                                                          


Q ss_pred             -----------------------------------------------------------------------------CCc
Q psy17620        315 -----------------------------------------------------------------------------MDA  317 (741)
Q Consensus       315 -----------------------------------------------------------------------------~~~  317 (741)
                                                                                                   .+.
T Consensus       500 p~Qv~l~~~qi~wt~~ve~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~k~~~li~~~vh~rDvv~~l~~~~v~~~  579 (2695)
T 4akg_A          500 IFQAILLSAQVMWTELVEKCLQTNQFSKYWKEVDMKIKGLLDKLNKSSDNVKKKIEALLVEYLHFNNVIGQLKNCSTKEE  579 (2695)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence                                                                                         013


Q ss_pred             ChHHHHHHhhhhhcccccCccCceEEEEeccccccccccccccccccccccccccCCCCCceeccchhHHHHHHHHHHHc
Q psy17620        318 EEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSM  397 (741)
Q Consensus       318 ~~f~W~~qLRyy~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~YgyEYlG~~~rLViTPLTdRc~~tl~~Al~~  397 (741)
                      ++|+|++||||||+++..+..+.|.|++++++|.               |||||+|+++|||+||+|||||+++++|+++
T Consensus       580 ~~f~W~~qlR~y~~~~~~~~~~~~~v~~~~~~~~---------------YgyEYlG~~~rlViTPltdr~~~tl~~Al~~  644 (2695)
T 4akg_A          580 ARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQ---------------YKFEYIGIPERLIYTPLLLIGFATLTDSLHQ  644 (2695)
T ss_dssp             HHHHHHHSCEEEECSSCSCGGGTEEEEETTEEEE---------------CCCCCCCSCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred             chHhHHhcceEEEcCccccccceeEEEEcCeEee---------------ccccccCCCCcceecHHHHHHHHHHHHHHHh
Confidence            4799999999999876533334688999887766               9999999999999999999999999999999


Q ss_pred             ccCCCCC-----------------------------CCCHHHHHHHHHHhhhcCcceeecccccCChhhHHHHHHHHHHH
Q psy17620        398 RLGAAPA-----------------------------GMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTI  448 (741)
Q Consensus       398 ~~GGap~-----------------------------~~d~~~~~ri~~Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I  448 (741)
                      ++||+|+                             ++|++.||++|+|++++|+|+|||||||++.+|||++++||..|
T Consensus       645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~i  724 (2695)
T 4akg_A          645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQI  724 (2695)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHHH
Confidence            9998864                             68999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHHhhcceeeeccCCCHHHHHHHHHhhcCccchHHHHHH
Q psy17620        449 RTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKK  528 (741)
Q Consensus       449 ~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRpvam~~PD~~~I~ei~L~s~GF~~a~~La~K  528 (741)
                      +.|+.+++.++.++|++|+++|+|++|+||||||+||++||+|||++||||+|+.||++.|+|++|++.||.+++.||+|
T Consensus       725 ~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~s~Gf~~a~~la~k  804 (2695)
T 4akg_A          725 QNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASK  804 (2695)
T ss_dssp             HHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred             HHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHHhcCCCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCccccchhhHHHHHHHhhHhHhhhccchHHHHHHHHHHhccCCCcchhh----------------
Q psy17620        529 MAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSED----------------  592 (741)
Q Consensus       529 l~~l~~l~~e~ls~q~hydfgLRalksVL~~a~~l~~~~~~~~E~~~l~ral~~~~lPkl~~~D----------------  592 (741)
                      ++.+|++|++++|+|.|||||||++|+||+.||.++|..+  +|+.++++|++++|+||++.+|                
T Consensus       805 iv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~~--~e~~~l~~al~~~~lpk~~~~D~~lf~~li~dlFp~~~  882 (2695)
T 4akg_A          805 IVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFG--EGEKTVVESLKRVILPSLGDTDELVFKDELSKIFDSAG  882 (2695)
T ss_dssp             HHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHSC--SSHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHCCCCS
T ss_pred             HHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccCC--cHHHHHHHHHHHhccccCchhhHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999999999999874  6778999999999999998877                


Q ss_pred             ------------------------------HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccC-CCCeEEEEeCC
Q psy17620        593 ------------------------------VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNP  641 (741)
Q Consensus       593 ------------------------------v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~~~inp  641 (741)
                                                    ++|||+++.+|||||||||||||||++|++|++|++.+ |.++..++|||
T Consensus       883 ~~~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inp  962 (2695)
T 4akg_A          883 TPLNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDT  962 (2695)
T ss_dssp             CCSSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECT
T ss_pred             CCCChHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence                                          78999999999999999999999999999999999876 56788999999


Q ss_pred             CccccccccccccCCCCCcccChHHHHHHHhcCCCCCC-CCCCeEEEEcCCCChhhhhhccccccCCceeeccCCCeeec
Q psy17620        642 KAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPG-SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRL  720 (741)
Q Consensus       642 ka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~-~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L~L~nGeri~l  720 (741)
                      |++|++||||.+||+|+||+||+|++++|+++.+..++ ++.++|||||||+||.|||+|||||||||+|||+|||||++
T Consensus       963 k~~t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~~~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~l 1042 (2695)
T 4akg_A          963 KVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPI 1042 (2695)
T ss_dssp             TTSCHHHHTTEECTTTCCEECCSHHHHHHHHHTCCCSSCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEEC
T ss_pred             CCCCHHHhcceecCCCCeEecChHHHHHHHHHhccccccCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEec
Confidence            99999999999999999999999999999987654332 23489999999999999999999999999999999999999


Q ss_pred             CCCceEEEEeCCCCCCCCCC
Q psy17620        721 LAHCQLLFEIHPIQSDSHPR  740 (741)
Q Consensus       721 ~~~~rliFE~~~L~~aSPAt  740 (741)
                      +|+|++||||+||++|||||
T Consensus      1043 ~~~~~llFEv~dL~~ASPAT 1062 (2695)
T 4akg_A         1043 PPNFRILFETDNLDHTTPAT 1062 (2695)
T ss_dssp             CSSCEEEEEESCCTTSCHHH
T ss_pred             CCCcEEEEEecccccCCccc
Confidence            99999999999999999998

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=99.91  E-value=1.3e-25  Score=293.27  Aligned_cols=162  Identities=16%  Similarity=0.229  Sum_probs=144.0

Q ss_pred             CCCCCCccc--cCChHHHHHHHHHHHHHHHHHhh---------------hhhhhHHHhchhhHHHHhhhhhccHHHHHHH
Q psy17620          1 MDFRTPQLT--FGEIEQWMTRVLDEMMTENLVCS---------------CQMTEWMLDNIGMTVLAANGVWWTAEVENVF   63 (741)
Q Consensus         1 v~f~~pv~~--~g~VE~WL~~le~~M~~tl~~~~---------------~~~~~W~~~~p~Qvvl~~~qi~wT~~ve~al   63 (741)
                      |+|.+||.+  .|+||.||.+||++|+.||+..+               .+|.+|+.+||+||+++++||+||++||+||
T Consensus       389 v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wT~~ve~al  468 (3245)
T 3vkg_A          389 VTFKKPISIANGPKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQAL  468 (3245)
T ss_dssp             EEEEEEEESSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccHHHHHHHCcHHHHHHHHHheeHHHHHHHH
Confidence            578899855  57999999999999999998764               2478999999999999999999999999999


Q ss_pred             Hhhhc---CChHHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccchhhhcccccccccccccccceeeeeechhhhhhh
Q psy17620         64 AKIRA---GNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKKFNTVLIVDVRGELTKNDRKKFNTVLIVDVHARDIIDN  140 (741)
Q Consensus        64 ~~~~~---g~~~~l~~~~~~~~~~L~~l~~~v~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~kl~ali~~~vH~rDii~~  140 (741)
                      .+.+.   |.+.+|++|++++..+|+.|+.++++++++.+|.                    |++||||++||+||||+.
T Consensus       469 ~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~v~~~l~~~~R~--------------------kl~~Lit~~VH~RDvv~~  528 (3245)
T 3vkg_A          469 GGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRK--------------------KFEHLITELVHQRDVVRQ  528 (3245)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH--------------------HHHHHHHHHHHHHHHHHH
T ss_pred             HhccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH--------------------HHHHHHHHHHHHHHHHHH
Confidence            75432   2356899999999999999999999999999999                    999999999999999999


Q ss_pred             hhc-cCccCCCcccc-hhhcccccccc------ceEEEEccchHHHHHHH
Q psy17620        141 FIG-SDSLSPRSVVR-GELTKNDRKKF------NTVLIVDVHARDIIDNF  182 (741)
Q Consensus       141 l~~-~~v~~~~~~~W-~Qlr~yw~~~~------~~~~~idv~~r~vye~~  182 (741)
                      |++ .+|.+++||.| +|+||||+++.      +.+.++|+++.|.||.+
T Consensus       529 L~~~~~v~~~~dF~W~~qlRyy~~~~~~~~~~~~~v~~~~~~f~YgyEYl  578 (3245)
T 3vkg_A          529 LQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFYYGFEYL  578 (3245)
T ss_dssp             HHTCCSCCSTTCHHHHTSEEEEECSSSSSSGGGEEEEETTEEEECCCCCC
T ss_pred             HHHhcCCCCcchhHHHhhhheeeccccCCcCceEEEEEcCceecCccccC
Confidence            999 99999999999 99999998653      45677899999988643

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=99.84  E-value=2e-22  Score=262.73  Aligned_cols=155  Identities=11%  Similarity=0.128  Sum_probs=129.6

Q ss_pred             CCCCCCccccC--ChHHHHHHHHHHHHHHHHHhh----------hhhhhHHHhchhhHHHHhhhhhccHHHHHHHHhhhc
Q psy17620          1 MDFRTPQLTFG--EIEQWMTRVLDEMMTENLVCS----------CQMTEWMLDNIGMTVLAANGVWWTAEVENVFAKIRA   68 (741)
Q Consensus         1 v~f~~pv~~~g--~VE~WL~~le~~M~~tl~~~~----------~~~~~W~~~~p~Qvvl~~~qi~wT~~ve~al~~~~~   68 (741)
                      |+|.+||.+.|  +||.||.+||++|+.||+..+          .++.+|+.+||+||++++.||+||++||+||..   
T Consensus       446 v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wt~~ve~a~~~---  522 (2695)
T 4akg_A          446 LNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEVVVSKYIFQAILLSAQVMWTELVEKCLQT---  522 (2695)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             EEeCCceecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHChHHHHHHHHHHHHHHHHHHHHHh---
Confidence            57889998876  799999999999999998864          357899999999999999999999999999973   


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccchhhhcccccccccccccccceeeeeechhhhhhhhhccCccC
Q psy17620         69 GNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKKFNTVLIVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDSLS  148 (741)
Q Consensus        69 g~~~~l~~~~~~~~~~L~~l~~~v~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~kl~ali~~~vH~rDii~~l~~~~v~~  148 (741)
                      ++..++.++++   .+++.+... ++++++..|.                    |++||||++||+|||++.|++.+|.+
T Consensus       523 ~~~~~~~~~~~---~~~~~l~~~-~~~~~~~~r~--------------------k~~~li~~~vh~rDvv~~l~~~~v~~  578 (2695)
T 4akg_A          523 NQFSKYWKEVD---MKIKGLLDK-LNKSSDNVKK--------------------KIEALLVEYLHFNNVIGQLKNCSTKE  578 (2695)
T ss_dssp             TCHHHHHHHHH---HHHHHHHHH-HHTSCHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHCSSHH
T ss_pred             ccHHHHHHHHH---HHHHHHHHH-hhccCHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34445554444   445555443 3567888888                    99999999999999999999999999


Q ss_pred             CCcccc-hhhcccccccc------ceEEEEccchHHHHHHH
Q psy17620        149 PRSVVR-GELTKNDRKKF------NTVLIVDVHARDIIDNF  182 (741)
Q Consensus       149 ~~~~~W-~Qlr~yw~~~~------~~~~~idv~~r~vye~~  182 (741)
                      ++||.| +|+||||+++.      ..+.+.|+++.|.||.+
T Consensus       579 ~~~f~W~~qlR~y~~~~~~~~~~~~~v~~~~~~~~YgyEYl  619 (2695)
T 4akg_A          579 EARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKFEYI  619 (2695)
T ss_dssp             HHHHHHHHSCEEEECSSCSCGGGTEEEEETTEEEECCCCCC
T ss_pred             cchHhHHhcceEEEcCccccccceeEEEEcCeEeecccccc
Confidence            999999 99999998653      34677899999888653

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.53  E-value=6.8e-07  Score=106.38  Aligned_cols=111  Identities=23%  Similarity=0.257  Sum_probs=76.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc----cccccccccccCCCCCcccChHHHHHHHhcCCCCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA----VSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS  680 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka----~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~  680 (741)
                      .++++||||+|||++.+.+++.+.     .....+|...    .+..+++|.-..-.+.=..|.+...+++.        
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~--------  556 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH--------  556 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHC--------
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhC--------
Confidence            699999999999999999999873     2344554333    34567777631100101236677777753        


Q ss_pred             CCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        681 KERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       681 ~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                       ....++||  ..+++...+.|..+||+. .++-+.|..+.+ .++.+|+-+.
T Consensus       557 -~~~vl~lDEi~~~~~~~~~~Ll~~le~~-~~~~~~g~~~~~-~~~~iI~tsN  606 (758)
T 1r6b_X          557 -PHAVLLLDEIEKAHPDVFNILLQVMDNG-TLTDNNGRKADF-RNVVLVMTTN  606 (758)
T ss_dssp             -SSEEEEEETGGGSCHHHHHHHHHHHHHS-EEEETTTEEEEC-TTEEEEEEEC
T ss_pred             -CCcEEEEeCccccCHHHHHHHHHHhcCc-EEEcCCCCEEec-CCeEEEEecC
Confidence             35899999  557788888999999865 455667777776 5677777654

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.05  E-value=1.6e-05  Score=95.99  Aligned_cols=113  Identities=22%  Similarity=0.323  Sum_probs=70.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc----ccccccccccCCCCCccc-ChHHHHHHHhcCCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV----SVIELYGVLNPETRDWYD-GLLSNIFRAVNKPLDP  678 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~----t~~eLyG~~d~~t~eW~D-Gvls~i~R~~~~~~~~  678 (741)
                      ++++++||||+|||++.+.++..+..-+.  ....+|...+    ...+++|.- |.-..+.. |.++..+++.      
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~--~~i~i~~~~~~~~~~~s~l~g~~-~~~~G~~~~g~l~~~~~~~------  659 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEE--AMIRIDMTEYMEKHAVSRLIGAP-PGYVGYEEGGQLTEAVRRR------  659 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGG--GEEEECTTTCCSSGGGGGC---------------CHHHHHHHC------
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCC--cEEEEechhccchhHHHHHcCCC-CCCcCccccchHHHHHHhC------
Confidence            57999999999999999999998753222  3344554433    346677653 11112333 7788887752      


Q ss_pred             CCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEe
Q psy17620        679 GSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEI  730 (741)
Q Consensus       679 ~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~  730 (741)
                         ....++||  +.+++.....|..+||+.+ ++-..|..+.. .++.+|+-+
T Consensus       660 ---~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~-~~~~~g~~vd~-~~~iiI~ts  708 (854)
T 1qvr_A          660 ---PYSVILFDEIEKAHPDVFNILLQILDDGR-LTDSHGRTVDF-RNTVIILTS  708 (854)
T ss_dssp             ---SSEEEEESSGGGSCHHHHHHHHHHHTTTE-ECCSSSCCEEC-TTEEEEEEC
T ss_pred             ---CCeEEEEecccccCHHHHHHHHHHhccCc-eECCCCCEecc-CCeEEEEec
Confidence               34799999  5678888888999998764 45555665555 344466644

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.05  E-value=5.9e-06  Score=98.42  Aligned_cols=104  Identities=20%  Similarity=0.255  Sum_probs=66.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCe
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK  684 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~  684 (741)
                      +++++||||+|||++.+.+++.+..-+.+  ...+|..     ++.+....     ..|.++..+++.         ...
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~--~i~i~~s-----~~~~~~~~-----~~~~l~~~~~~~---------~~~  581 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEES--MIRIDMS-----EYMEKHST-----SGGQLTEKVRRK---------PYS  581 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTC--EEEEEGG-----GGCSSCCC-----C---CHHHHHHC---------SSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcc--eEEEech-----hccccccc-----ccchhhHHHHhC---------CCe
Confidence            59999999999999999999997432333  3444432     23222211     156777777743         346


Q ss_pred             EEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        685 YILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       685 WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                      .++||  +.+++.....|..+||+. .++...|..+. +.++++|+-++
T Consensus       582 vl~lDEi~~~~~~~~~~Ll~~le~g-~~~~~~g~~~~-~~~~~iI~ttn  628 (758)
T 3pxi_A          582 VVLLDAIEKAHPDVFNILLQVLEDG-RLTDSKGRTVD-FRNTILIMTSN  628 (758)
T ss_dssp             EEEEECGGGSCHHHHHHHHHHHHHS-BCC-----CCB-CTTCEEEEEES
T ss_pred             EEEEeCccccCHHHHHHHHHHhccC-eEEcCCCCEec-cCCeEEEEeCC
Confidence            99999  667888999999999885 45555665544 45778888665

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.45  E-value=8.1e-05  Score=79.29  Aligned_cols=116  Identities=23%  Similarity=0.319  Sum_probs=74.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccC----CCCeE------------------------EEEeCCCccccccccccc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVL----GYPAR------------------------TYTLNPKAVSVIELYGVL  653 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~------------------------~~~inpka~t~~eLyG~~  653 (741)
                      ...+++|+||||+|||++.+.+++.+...    +.++.                        ... -|...+..+++|..
T Consensus        44 ~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~  122 (350)
T 1g8p_A           44 GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVD-LPLGVSEDRVVGAL  122 (350)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEE-ECTTCCHHHHHCEE
T ss_pred             CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccc-cCCCcchhhheeec
Confidence            45679999999999999999999987531    11111                        111 12333445667764


Q ss_pred             cCC------CCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCce
Q psy17620        654 NPE------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQ  725 (741)
Q Consensus       654 d~~------t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~r  725 (741)
                      +..      ...+..|.+...             ....+++|  +.+++.-.+.|..+|++........|.....+.++.
T Consensus       123 ~~~~~~~~~~~~~~~g~~~~a-------------~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~  189 (350)
T 1g8p_A          123 DIERAISKGEKAFEPGLLARA-------------NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFV  189 (350)
T ss_dssp             CHHHHHHHCGGGEECCHHHHH-------------TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEE
T ss_pred             hhhhhhcCCceeecCceeeec-------------CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceE
Confidence            321      123455554322             24799999  556777777777778776555556777777788888


Q ss_pred             EEEEeC
Q psy17620        726 LLFEIH  731 (741)
Q Consensus       726 liFE~~  731 (741)
                      +|.-+.
T Consensus       190 li~~~n  195 (350)
T 1g8p_A          190 LVGSGN  195 (350)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            887665

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.44  E-value=0.0011  Score=70.25  Aligned_cols=86  Identities=21%  Similarity=0.184  Sum_probs=69.0

Q ss_pred             CcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccC-CCCCCCCchHHHhhcce-ee
Q psy17620        422 GAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNP-GYAGRTELPESVKALFR-PV  499 (741)
Q Consensus       422 GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNp-gy~gr~eLP~nLk~lFR-pv  499 (741)
                      +.++++||+|+++.++.+.+.+       ++..  ..+.+.|.....++.+.++.|+|| ++.|+..||+.|...|. .+
T Consensus       110 ~~vl~iDEi~~~~~~~~~~Ll~-------~l~~--~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i  180 (331)
T 2r44_A          110 SNFILADEVNRSPAKVQSALLE-------CMQE--KQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKI  180 (331)
T ss_dssp             SSEEEEETGGGSCHHHHHHHHH-------HHHH--SEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEE
T ss_pred             ccEEEEEccccCCHHHHHHHHH-------HHhc--CceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEE
Confidence            4789999999999988776633       3322  245667888888889999999998 56777789999999998 48


Q ss_pred             eccCCCHHHHHHHHHhh
Q psy17620        500 VCIVPDFELICQIMLFS  516 (741)
Q Consensus       500 am~~PD~~~I~ei~L~s  516 (741)
                      .+..||.+...+++-..
T Consensus       181 ~i~~p~~~~~~~il~~~  197 (331)
T 2r44_A          181 HLTYLDKESELEVMRRV  197 (331)
T ss_dssp             ECCCCCHHHHHHHHHHH
T ss_pred             EcCCCCHHHHHHHHHhc
Confidence            99999999988877554

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.38  E-value=0.00049  Score=71.99  Aligned_cols=115  Identities=21%  Similarity=0.272  Sum_probs=72.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCCCCCccc-ChHHHHHHHhcCCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPETRDWYD-GLLSNIFRAVNKPLDP  678 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~t~eW~D-Gvls~i~R~~~~~~~~  678 (741)
                      +.++++||||+|||++.+.+++.+..-+.+  +..++...++    ..+++|.... ...+.. |.+...+++.      
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~--~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~------  118 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA--MIRIDMTEYMEKHAVSRLIGAPPG-YVGYEEGGQLTEAVRRR------  118 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGG--EEEEEGGGCCSTTHHHHHHCCCTT-STTTTTCCHHHHHHHHC------
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcc--eEEeecccccccccHHHhcCCCCc-cccccccchHHHHHHhC------
Confidence            689999999999999999999987543222  3334433332    3456765432 223433 7777777643      


Q ss_pred             CCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCC
Q psy17620        679 GSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHP  732 (741)
Q Consensus       679 ~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~  732 (741)
                         ....+++|  ..+++.....|-.+|++.. ++-..|..+.++ ++.+|+-+..
T Consensus       119 ---~~~vl~lDEi~~l~~~~~~~Ll~~le~~~-~~~~~~~~~~~~-~~iiI~ttn~  169 (311)
T 4fcw_A          119 ---PYSVILFDAIEKAHPDVFNILLQMLDDGR-LTDSHGRTVDFR-NTVIIMTSNL  169 (311)
T ss_dssp             ---SSEEEEEETGGGSCHHHHHHHHHHHHHSE-EECTTSCEEECT-TEEEEEEEST
T ss_pred             ---CCeEEEEeChhhcCHHHHHHHHHHHhcCE-EEcCCCCEEECC-CcEEEEeccc
Confidence               34799999  4456677777777777653 344556666654 3446665543

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.32  E-value=0.0004  Score=78.80  Aligned_cols=134  Identities=12%  Similarity=0.139  Sum_probs=79.9

Q ss_pred             CCcchhh--HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccC
Q psy17620        586 PKFVSED--VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDG  663 (741)
Q Consensus       586 Pkl~~~D--v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DG  663 (741)
                      +.++..+  +..+...+..+.+|+|+||||+|||++.+.+++.+..   ......++....+.++++|.++... .-..|
T Consensus        22 ~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~---~~~f~~~~~~~~t~~dL~G~~~~~~-~~~~g   97 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN---ARAFEYLMTRFSTPEEVFGPLSIQA-LKDEG   97 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSS---CCEEEEECCTTCCHHHHHCCBC---------
T ss_pred             hhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhh---hhHHHHHHHhcCCHHHhcCcccHHH-Hhhch
Confidence            4444433  4456667778899999999999999999999987632   2223344444446689999764211 00112


Q ss_pred             hHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620        664 LLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI  733 (741)
Q Consensus       664 vls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L  733 (741)
                      .+.       ....+......++++|  +..++.....|-.+|++.. ++. .|.....|..+ +|+-++.+
T Consensus        98 ~~~-------~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~-v~i-~G~~~~~~~~~-iI~ATN~l  159 (500)
T 3nbx_X           98 RYE-------RLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQ-FRN-GAHVEKIPMRL-LVAASNEL  159 (500)
T ss_dssp             --C-------BCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSE-EEC-SSSEEECCCCE-EEEEESSC
T ss_pred             hHH-------hhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHh-ccC-CCCcCCcchhh-hhhccccC
Confidence            111       0111111134689999  5577777788888887654 344 57767766554 46666544

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.13  E-value=0.00017  Score=75.98  Aligned_cols=120  Identities=14%  Similarity=0.114  Sum_probs=62.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE  682 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~  682 (741)
                      ..+++|+||||+|||++.+.+++.++   .+  ++.++.     .++.+.+-    .-..+.+..+++++.....  ...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l~---~~--~i~v~~-----~~l~~~~~----g~~~~~i~~~f~~a~~~~~--~~~   99 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKMG---IN--PIMMSA-----GELESGNA----GEPAKLIRQRYREAAEIIR--KGN   99 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHT---CC--CEEEEH-----HHHHCC-------HHHHHHHHHHHHHHHHHT--TSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC---CC--EEEEeH-----HHhhhccC----chhHHHHHHHHHHHHHHHh--cCC
Confidence            45899999999999999999999873   22  333332     23322210    1123344555555421000  124


Q ss_pred             CeEEEEcCCCCh----------------hhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCCCCCCCC
Q psy17620        683 RKYILFDGDVDA----------------LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDSHP  739 (741)
Q Consensus       683 ~~WIVfDG~vd~----------------~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L~~aSPA  739 (741)
                      +..|++| ++|.                .+...|..+||+.....+.......-.+++.+|.-+.+....-||
T Consensus       100 ~~vl~iD-EiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~a  171 (293)
T 3t15_A          100 MCCLFIN-DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAP  171 (293)
T ss_dssp             CCCEEEE-CCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CH
T ss_pred             CeEEEEe-chhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHH
Confidence            5788888 2321                244667777776554444444444445677888888777666554

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.13  E-value=0.00093  Score=70.93  Aligned_cols=133  Identities=17%  Similarity=0.201  Sum_probs=80.7

Q ss_pred             HHHHHhccCCCcchhh--HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccccc
Q psy17620        577 MRALRDMNLPKFVSED--VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLN  654 (741)
Q Consensus       577 ~ral~~~~lPkl~~~D--v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d  654 (741)
                      ...++....+.++..+  +..+...+...++++|+||||+|||++.+.+++.+.   .+.......|. .+..++.|...
T Consensus        18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~---~~~~~i~~~~~-~~~~~l~g~~~   93 (331)
T 2r44_A           18 IKEVIDEVGKVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD---LDFHRIQFTPD-LLPSDLIGTMI   93 (331)
T ss_dssp             HHHHHHHHTTTCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT---CCEEEEECCTT-CCHHHHHEEEE
T ss_pred             HHHHHHHhccceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC---CCeEEEecCCC-CChhhcCCcee
Confidence            3344444445555443  444556666788999999999999999999998863   33332223332 23355666542


Q ss_pred             --CCCCC--cccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEE
Q psy17620        655 --PETRD--WYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLF  728 (741)
Q Consensus       655 --~~t~e--W~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliF  728 (741)
                        +..+.  |..|.+                ...++++|  ..+++.-...|..+|++.. +++ .|.....+..+.++.
T Consensus        94 ~~~~~~~~~~~~g~l----------------~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~-~~~-~g~~~~~~~~~~via  155 (331)
T 2r44_A           94 YNQHKGNFEVKKGPV----------------FSNFILADEVNRSPAKVQSALLECMQEKQ-VTI-GDTTYPLDNPFLVLA  155 (331)
T ss_dssp             EETTTTEEEEEECTT----------------CSSEEEEETGGGSCHHHHHHHHHHHHHSE-EEE-TTEEEECCSSCEEEE
T ss_pred             ecCCCCceEeccCcc----------------cccEEEEEccccCCHHHHHHHHHHHhcCc-eee-CCEEEECCCCEEEEE
Confidence              22222  333322                13699999  3456666677777777653 344 577777787777775


Q ss_pred             EeC
Q psy17620        729 EIH  731 (741)
Q Consensus       729 E~~  731 (741)
                      -+.
T Consensus       156 t~n  158 (331)
T 2r44_A          156 TQN  158 (331)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            433

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.12  E-value=0.00038  Score=74.00  Aligned_cols=106  Identities=18%  Similarity=0.241  Sum_probs=66.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKER  683 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~  683 (741)
                      .+|+|+||||+|||++.+.+++.+.   .+  ...+|..+++               ..|-+..++++.        ...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~---~~--~~~~~~~~~~---------------~~~~~~~~~~~~--------~~~  107 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMS---AN--IKTTAAPMIE---------------KSGDLAAILTNL--------SEG  107 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTT---CC--EEEEEGGGCC---------------SHHHHHHHHHTC--------CTT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhC---CC--eEEecchhcc---------------chhHHHHHHHhc--------cCC
Confidence            4899999999999999999988753   22  3333322221               233445555532        245


Q ss_pred             eEEEEc--CCCChhhhhhccccccCCceeeccCC----C--eeecCCCceEEEEeCCCCCCCC
Q psy17620        684 KYILFD--GDVDALWIENMNSVMDDNKILTLANG----E--RIRLLAHCQLLFEIHPIQSDSH  738 (741)
Q Consensus       684 ~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nG----e--ri~l~~~~rliFE~~~L~~aSP  738 (741)
                      ..+++|  +.+++.+.+.|..+|++.+...+..+    .  ++.+| ++++|.-+.......|
T Consensus       108 ~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~~l~~  169 (338)
T 3pfi_A          108 DILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAGMLSN  169 (338)
T ss_dssp             CEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGGGSCH
T ss_pred             CEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCccccCH
Confidence            799999  66778899999999988765433211    2  22333 6788887776544443

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.12  E-value=0.00061  Score=69.98  Aligned_cols=117  Identities=18%  Similarity=0.226  Sum_probs=71.6

Q ss_pred             HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC-C--CCcccChHHHHHH
Q psy17620        598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE-T--RDWYDGLLSNIFR  670 (741)
Q Consensus       598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~-t--~eW~DGvls~i~R  670 (741)
                      .......+|+|+||||+|||++.+.+++.....+.  ....+|...++.    .+|||..... +  .....|.+..   
T Consensus        24 ~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~---   98 (265)
T 2bjv_A           24 HLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQG--PFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFER---   98 (265)
T ss_dssp             HHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTS--CEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHH---
T ss_pred             HHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCC--CeEEEecCCCChhHHHHHhcCCcccccccccccccchhhh---
Confidence            33456789999999999999999999987653332  344566555432    4567753210 0  1123454432   


Q ss_pred             HhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        671 AVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       671 ~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                       +         ....+++|  +.+++...+.|..+|++...  -+.|.....+.++++|+-++
T Consensus        99 -a---------~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~~iI~atn  149 (265)
T 2bjv_A           99 -A---------DGGTLFLDELATAPMMVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATN  149 (265)
T ss_dssp             -T---------TTSEEEEESGGGSCHHHHHHHHHHHHHCEE--CCCCC--CEECCCEEEEEES
T ss_pred             -c---------CCcEEEEechHhcCHHHHHHHHHHHHhCCe--ecCCCcccccCCeEEEEecC
Confidence             1         23589999  55677777778888876643  23344445566788888665

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.11  E-value=0.00084  Score=65.41  Aligned_cols=98  Identities=14%  Similarity=0.158  Sum_probs=53.3

Q ss_pred             HHHHHHhhcc--ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHH
Q psy17620        594 VQMYETMLTR--HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRA  671 (741)
Q Consensus       594 ~qL~e~l~~r--~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~  671 (741)
                      .++.+.+...  ..++|+||+|+|||++.+.+++.+..-+.......+++....               ....+...+..
T Consensus        27 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~   91 (226)
T 2chg_A           27 QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER---------------GIDVVRHKIKE   91 (226)
T ss_dssp             HHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT---------------CHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc---------------ChHHHHHHHHH
Confidence            3444444443  349999999999999999999876432222223333322110               01122233333


Q ss_pred             hcCCCCCCCCCCeEEEEcC--CCChhhhhhccccccC
Q psy17620        672 VNKPLDPGSKERKYILFDG--DVDALWIENMNSVMDD  706 (741)
Q Consensus       672 ~~~~~~~~~~~~~WIVfDG--~vd~~wiE~LNsvLDd  706 (741)
                      ..............|++|.  .+++...+.|..++++
T Consensus        92 ~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~  128 (226)
T 2chg_A           92 FARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM  128 (226)
T ss_dssp             HHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred             HhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHh
Confidence            3222111124678999993  3555556667666654

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.10  E-value=0.0011  Score=70.26  Aligned_cols=115  Identities=23%  Similarity=0.333  Sum_probs=75.3

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCC-CCC--cccChHHHHHHHh
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPE-TRD--WYDGLLSNIFRAV  672 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~-t~e--W~DGvls~i~R~~  672 (741)
                      .....+|+|+||||+|||++.+.++......+.+  ...+|..+++    ..+|||+.... |+.  -..|.|..    +
T Consensus        22 a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~--~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~----a   95 (304)
T 1ojl_A           22 APSDATVLIHGDSGTGKELVARALHACSARSDRP--LVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE----A   95 (304)
T ss_dssp             CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSC--CCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHH----H
T ss_pred             hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCC--eEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHh----c
Confidence            3457899999999999999999999876544333  3445555554    36788874211 111  23444432    2


Q ss_pred             cCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        673 NKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       673 ~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                               ....+++|  +.+++.....|..+|++...-  +.|..-..+.++++|+-++
T Consensus        96 ---------~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~riI~atn  145 (304)
T 1ojl_A           96 ---------DGGTLFLDEIGDISPLMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATH  145 (304)
T ss_dssp             ---------TTSEEEEESCTTCCHHHHHHHHHHHHSSBCC--BTTBCCCCBCCCEEEEEES
T ss_pred             ---------CCCEEEEeccccCCHHHHHHHHHHHhcCEee--ecCCcccccCCeEEEEecC
Confidence                     22579999  667777777788888876543  3444455677888888775

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.88  E-value=0.0014  Score=75.87  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +..+...+...+.++|+|||||||||+.+.+++.+.
T Consensus        50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            345666677889999999999999999999999874

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.86  E-value=0.0033  Score=66.06  Aligned_cols=110  Identities=17%  Similarity=0.198  Sum_probs=66.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE  682 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~  682 (741)
                      .++|+|+||||+|||++.+.+++.+.   .  ....++..+++.               .+-+...++..       ...
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~---~--~~~~~~~~~~~~---------------~~~l~~~l~~~-------~~~   90 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELG---V--NLRVTSGPAIEK---------------PGDLAAILANS-------LEE   90 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHT---C--CEEEECTTTCCS---------------HHHHHHHHTTT-------CCT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhC---C--CEEEEeccccCC---------------hHHHHHHHHHh-------ccC
Confidence            47899999999999999999998763   2  233344333321               11122222210       124


Q ss_pred             CeEEEEc--CCCChhhhhhccccccCCceeeccCCC----eee-cCCCceEEEEeCCCCCCCCC
Q psy17620        683 RKYILFD--GDVDALWIENMNSVMDDNKILTLANGE----RIR-LLAHCQLLFEIHPIQSDSHP  739 (741)
Q Consensus       683 ~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGe----ri~-l~~~~rliFE~~~L~~aSPA  739 (741)
                      ...+++|  +.+++...+.|..++++...-.+....    .+. .++++++|.-+.......|+
T Consensus        91 ~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~  154 (324)
T 1hqc_A           91 GDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP  154 (324)
T ss_dssp             TCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCS
T ss_pred             CCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHH
Confidence            5799999  556777777788888776544332211    121 23467888887766555543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.85  E-value=0.0016  Score=67.96  Aligned_cols=87  Identities=18%  Similarity=0.234  Sum_probs=53.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCC--CeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGY--PARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS  680 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~--~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~  680 (741)
                      .++++|+||||+|||++.+.+++.+...+.  ...+..+++..+. .+++|..        .+-+..++++.        
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~g~~--------~~~~~~~~~~~--------  129 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV-GQYIGHT--------APKTKEVLKRA--------  129 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC-CSSTTCH--------HHHHHHHHHHH--------
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh-hhccccc--------HHHHHHHHHhc--------
Confidence            457999999999999999999998865432  2234555544332 3333332        11234444443        


Q ss_pred             CCCeEEEEcC-----------CCChhhhhhccccccCC
Q psy17620        681 KERKYILFDG-----------DVDALWIENMNSVMDDN  707 (741)
Q Consensus       681 ~~~~WIVfDG-----------~vd~~wiE~LNsvLDdn  707 (741)
                       .+..|++|-           +.++...+.|..+|++.
T Consensus       130 -~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~  166 (309)
T 3syl_A          130 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN  166 (309)
T ss_dssp             -TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC
T ss_pred             -CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC
Confidence             235899992           22556667777777754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.81  E-value=0.0032  Score=68.35  Aligned_cols=97  Identities=19%  Similarity=0.159  Sum_probs=52.8

Q ss_pred             hhccc-eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCC-CCcccChHHHHHHHhcCCCC
Q psy17620        600 MLTRH-STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET-RDWYDGLLSNIFRAVNKPLD  677 (741)
Q Consensus       600 l~~r~-gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t-~eW~DGvls~i~R~~~~~~~  677 (741)
                      ..... -+.|+||+||||||+++++...+........+..-+|-.......-+.+.... ..-..+ +...++++-.   
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~-~~~~La~aL~---  194 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLG-FSEALRSALR---  194 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSC-HHHHHHHHTT---
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCC-HHHHHHHHhh---
Confidence            33444 47899999999999999999887653212223333443332221111111000 000111 2334444422   


Q ss_pred             CCCCCCeEEEEcCCCChhhhhhcccc
Q psy17620        678 PGSKERKYILFDGDVDALWIENMNSV  703 (741)
Q Consensus       678 ~~~~~~~WIVfDG~vd~~wiE~LNsv  703 (741)
                         .++..|++|-|-|++-++.+-..
T Consensus       195 ---~~PdvillDEp~d~e~~~~~~~~  217 (356)
T 3jvv_A          195 ---EDPDIILVGEMRDLETIRLALTA  217 (356)
T ss_dssp             ---SCCSEEEESCCCSHHHHHHHHHH
T ss_pred             ---hCcCEEecCCCCCHHHHHHHHHH
Confidence               25689999999998776664443

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.74  E-value=0.0027  Score=59.33  Aligned_cols=37  Identities=14%  Similarity=0.032  Sum_probs=29.1

Q ss_pred             HHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        597 YETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       597 ~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      .........|+|+||||+|||++.+.++......+.+
T Consensus        18 ~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~   54 (145)
T 3n70_A           18 QQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGE   54 (145)
T ss_dssp             HHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred             HHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence            3444677899999999999999999999876443444

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.67  E-value=0.00079  Score=72.99  Aligned_cols=92  Identities=14%  Similarity=0.348  Sum_probs=51.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      ..++++|+||||+|||++.+.+++.+.   .  .+..++...++...++|.-       ..+.+..++.......  ...
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~---~--~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~--~~~  136 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLD---I--PIAISDATSLTEAGYVGED-------VENILTRLLQASDWNV--QKA  136 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT---C--CEEEEEGGGCC---------------CTHHHHHHHHHTTTCH--HHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhC---C--CEEEecchhhhhcCcCCcc-------HHHHHHHHHhhccchh--hhc
Confidence            467899999999999999999999873   2  3344554444444444431       1345555555332110  011


Q ss_pred             CCeEEEEc--CCCChh--------------hhhhccccccCC
Q psy17620        682 ERKYILFD--GDVDAL--------------WIENMNSVMDDN  707 (741)
Q Consensus       682 ~~~WIVfD--G~vd~~--------------wiE~LNsvLDdn  707 (741)
                      ....+++|  ..+.+.              ..+.|..+||+.
T Consensus       137 ~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~  178 (376)
T 1um8_A          137 QKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGS  178 (376)
T ss_dssp             TTSEEEEETGGGC--------------CHHHHHHHHHHHHCC
T ss_pred             CCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcc
Confidence            45788999  223333              567777888743

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=96.63  E-value=0.0016  Score=75.42  Aligned_cols=110  Identities=16%  Similarity=0.208  Sum_probs=75.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccC--CCCC--cccChHHHHHHHhcCCCCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP--ETRD--WYDGLLSNIFRAVNKPLDPGS  680 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~--~t~e--W~DGvls~i~R~~~~~~~~~~  680 (741)
                      .|+|+||||+|||++.+.+++.+..     ..+. .....+...+.|....  .+++  +..|.+..+            
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r-----~~~~-~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A------------  390 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPR-----AVYT-TGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA------------  390 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSC-----EECC-CTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH------------
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCC-----ceec-CCCccccccccceeeeccccccccccCCeeEec------------
Confidence            7999999999999999998877532     1111 1112333444444321  2333  467766532            


Q ss_pred             CCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620        681 KERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI  733 (741)
Q Consensus       681 ~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L  733 (741)
                       .+..+++|  +.+++.-.+.|..+|++...-....|....++..+++|.-+...
T Consensus       391 -~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~  444 (595)
T 3f9v_A          391 -DGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK  444 (595)
T ss_dssp             -SSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred             -CCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence             23588999  56778888899999988766555678889999999999888754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.61  E-value=0.0012  Score=61.58  Aligned_cols=76  Identities=11%  Similarity=0.073  Sum_probs=46.7

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCC
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPG  679 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~  679 (741)
                      .....+|+|+||||+|||++.+.++....      ....+|...++.            ++..|+    +..+       
T Consensus        24 ~~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~~~------------~~~~~~----~~~a-------   74 (143)
T 3co5_A           24 AKRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEYLI------------DMPMEL----LQKA-------   74 (143)
T ss_dssp             HTCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTHHH------------HCHHHH----HHHT-------
T ss_pred             hCCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhCCh------------HhhhhH----HHhC-------
Confidence            45678999999999999999888766532      334444433321            112232    2222       


Q ss_pred             CCCCeEEEEc--CCCChhhhhhccccccC
Q psy17620        680 SKERKYILFD--GDVDALWIENMNSVMDD  706 (741)
Q Consensus       680 ~~~~~WIVfD--G~vd~~wiE~LNsvLDd  706 (741)
                        ....+++|  +.+++.-...|..+|++
T Consensus        75 --~~~~l~lDei~~l~~~~q~~Ll~~l~~  101 (143)
T 3co5_A           75 --EGGVLYVGDIAQYSRNIQTGITFIIGK  101 (143)
T ss_dssp             --TTSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             --CCCeEEEeChHHCCHHHHHHHHHHHHh
Confidence              22578899  55666666666666664

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.54  E-value=0.0025  Score=65.84  Aligned_cols=28  Identities=21%  Similarity=0.504  Sum_probs=24.5

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...++++|+||||+|||++.+.+++.+.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            3467899999999999999999998863

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.51  E-value=0.0042  Score=60.72  Aligned_cols=28  Identities=21%  Similarity=0.107  Sum_probs=24.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      .-|+|.|++||||||+.+.|++.+...|
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g   32 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIELKR   32 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence            4588999999999999999999987554

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.50  E-value=0.0071  Score=59.34  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=26.6

Q ss_pred             HHHHHhhcc---ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        595 QMYETMLTR---HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       595 qL~e~l~~r---~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +|.+.+...   +.++|+||+|+|||++.+.+++.+.
T Consensus        34 ~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           34 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             HHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            444444433   4799999999999999999998875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.49  E-value=0.0014  Score=63.10  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=23.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+++|+||+|+||||+.+.++..+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999875

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=96.43  E-value=0.02  Score=64.11  Aligned_cols=133  Identities=17%  Similarity=0.249  Sum_probs=86.5

Q ss_pred             CcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCC-------CCCchHHHhh
Q psy17620        422 GAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAG-------RTELPESVKA  494 (741)
Q Consensus       422 GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~g-------r~eLP~nLk~  494 (741)
                      |--+|+||||+++.++++++       ..++..+  ++.+.|.  .++..|.+.+|+||-+..       ...||+.+-.
T Consensus       301 gGvl~lDEIn~~~~~~qsaL-------lEaMEe~--~VtI~G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD  369 (506)
T 3f8t_A          301 GGILAVDHLEGAPEPHRWAL-------MEAMDKG--TVTVDGI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS  369 (506)
T ss_dssp             TSEEEEECCTTCCHHHHHHH-------HHHHHHS--EEEETTE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT
T ss_pred             CCeeehHhhhhCCHHHHHHH-------HHHHhCC--cEEECCE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh
Confidence            45599999999999999887       4555444  4555576  889999999999995411       2389999999


Q ss_pred             cceeee--ccCCC-------------HHHHHHHHHhhc----CccchHHHHHHHHHHHHHHHHHhhc-----CCccccch
Q psy17620        495 LFRPVV--CIVPD-------------FELICQIMLFSE----GFLEAKVLAKKMAVLYKLSKEQLSK-----QCHYDFGM  550 (741)
Q Consensus       495 lFRpva--m~~PD-------------~~~I~ei~L~s~----GF~~a~~La~Kl~~l~~l~~e~ls~-----q~hydfgL  550 (741)
                      .|--+.  +..||             .+.+.+...++.    .-.-...+...++.+|...+..-..     ...+-.+.
T Consensus       370 RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSp  449 (506)
T 3f8t_A          370 HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTR  449 (506)
T ss_dssp             TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCH
T ss_pred             heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccH
Confidence            994332  22333             344444444443    2233456677888888877652111     13344567


Q ss_pred             hhHHHHHHHhhHhHh
Q psy17620        551 RALKSVLVMAGELKR  565 (741)
Q Consensus       551 RalksVL~~a~~l~~  565 (741)
                      |++.++++.|....+
T Consensus       450 R~leaLiRlA~A~A~  464 (506)
T 3f8t_A          450 RQLESVERLAKAHAR  464 (506)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998876544

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.38  E-value=0.071  Score=63.61  Aligned_cols=71  Identities=20%  Similarity=0.397  Sum_probs=45.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE  682 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~  682 (741)
                      ..||+|+||||||||.+.+.++...+.     ..+     +++..+|++.+--.+    .-.+..+|+.+...      .
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~-----~f~-----~v~~~~l~s~~vGes----e~~vr~lF~~Ar~~------~  570 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANECQA-----NFI-----SIKGPELLTMWFGES----EANVREIFDKARQA------A  570 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHTTTC-----EEE-----ECCHHHHHTTTCSSC----HHHHHHHHHHHHTT------C
T ss_pred             CceEEEecCCCCCchHHHHHHHHHhCC-----ceE-----EeccchhhccccchH----HHHHHHHHHHHHHc------C
Confidence            468999999999999999999987642     222     234445554442211    22456666666432      4


Q ss_pred             CeEEEEcCCCCh
Q psy17620        683 RKYILFDGDVDA  694 (741)
Q Consensus       683 ~~WIVfDG~vd~  694 (741)
                      +..|+|| .+|+
T Consensus       571 P~IifiD-EiDs  581 (806)
T 3cf2_A          571 PCVLFFD-ELDS  581 (806)
T ss_dssp             SEEEECS-CGGG
T ss_pred             Cceeech-hhhH
Confidence            5788888 4444

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.35  E-value=0.0054  Score=63.79  Aligned_cols=26  Identities=23%  Similarity=0.595  Sum_probs=23.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .++++|+||||+|||++.+.+++.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            57999999999999999999998863

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.34  E-value=0.0048  Score=58.42  Aligned_cols=37  Identities=14%  Similarity=0.413  Sum_probs=29.7

Q ss_pred             HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +.++.+.+..  .++++|+||||+|||++.+.+++.+..
T Consensus        31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            5556666554  367999999999999999999998754

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.34  E-value=0.0079  Score=67.45  Aligned_cols=98  Identities=15%  Similarity=0.308  Sum_probs=51.4

Q ss_pred             HHHHHHHh--hccceEEEEecCCCChhHHHHHHHHHhccCCC-----CeEEEEeCCCccccccccccccCCCCCcccChH
Q psy17620        593 VVQMYETM--LTRHSTMIVGPTGGGKSVVINALVKTSTVLGY-----PARTYTLNPKAVSVIELYGVLNPETRDWYDGLL  665 (741)
Q Consensus       593 v~qL~e~l--~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~-----~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvl  665 (741)
                      +.++.+.+  ....+++|+||||+|||++.+.++..+..-+.     ...++.++..        +.+   .+++.+ -+
T Consensus       189 i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------~~~---~g~~e~-~~  256 (468)
T 3pxg_A          189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------TKY---RGEFED-RL  256 (468)
T ss_dssp             HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------CT-TH
T ss_pred             HHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------ccc---cchHHH-HH
Confidence            55666666  34568999999999999999999998754221     1223333322        111   122322 34


Q ss_pred             HHHHHHhcCCCCCCCCCCeEEEEcCCCChhhhhhccccccCCcee
Q psy17620        666 SNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKIL  710 (741)
Q Consensus       666 s~i~R~~~~~~~~~~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L  710 (741)
                      ..++..+..      ..+..+++||..|+  ...|..+|+.+...
T Consensus       257 ~~~~~~~~~------~~~~iLfiD~~~~a--~~~L~~~L~~g~v~  293 (468)
T 3pxg_A          257 KKVMDEIRQ------AGNIILFIDAAIDA--SNILKPSLARGELQ  293 (468)
T ss_dssp             HHHHHHHHT------CCCCEEEECC----------CCCTTSSSCE
T ss_pred             HHHHHHHHh------cCCeEEEEeCchhH--HHHHHHhhcCCCEE
Confidence            555555543      24578999976654  34456666655433

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.31  E-value=0.0036  Score=65.16  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=22.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .++++||+|+|||++.+.+++.+.
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l~   63 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDLF   63 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHhc
Confidence            499999999999999999999864

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.30  E-value=0.00043  Score=74.79  Aligned_cols=97  Identities=10%  Similarity=0.304  Sum_probs=56.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      ...+++|+||||+|||++.+.+++.+.     ...+.++...+....++|.-       ..|.+..+++.......  ..
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~-----~~~~~~~~~~l~~~~~~g~~-------~~~~~~~~~~~~~~~~~--~~  115 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLD-----VPFTMADATTLTEAGYVGED-------VENIIQKLLQKCDYDVQ--KA  115 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHTTCHHHHHH-------HTHHHHHHHHHTTTCHH--HH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC-----CCEEEechHHhccccccccc-------HHHHHHHHHHHhhhhHH--hc
Confidence            457899999999999999999999873     23445555444444455542       13456666654321100  11


Q ss_pred             CCeEEEEcC--CCChh--------------hhhhccccccCCceeecc
Q psy17620        682 ERKYILFDG--DVDAL--------------WIENMNSVMDDNKILTLA  713 (741)
Q Consensus       682 ~~~WIVfDG--~vd~~--------------wiE~LNsvLDdnk~L~L~  713 (741)
                      .+..+++|.  .+.+.              ....|..+|| +....++
T Consensus       116 ~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~~  162 (363)
T 3hws_A          116 QRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVP  162 (363)
T ss_dssp             HHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC-----
T ss_pred             CCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhc-Cceeecc
Confidence            345899992  12222              6777788888 5555543

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.28  E-value=0.0025  Score=65.64  Aligned_cols=30  Identities=23%  Similarity=0.226  Sum_probs=25.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      .-|+|+|+|||||||+.+.|++.+...|.+
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~   34 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKILSKNNID   34 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHhCCCE
Confidence            458899999999999999999987666654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.13  E-value=0.017  Score=59.08  Aligned_cols=26  Identities=27%  Similarity=0.612  Sum_probs=23.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+|++|+||||+|||++.+.+++.+.
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhC
Confidence            56899999999999999999998864

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.10  E-value=0.01  Score=70.45  Aligned_cols=98  Identities=13%  Similarity=0.301  Sum_probs=52.2

Q ss_pred             HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhccCCC-----CeEEEEeCCCccccccccccccCCCCCcccChH
Q psy17620        593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTVLGY-----PARTYTLNPKAVSVIELYGVLNPETRDWYDGLL  665 (741)
Q Consensus       593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~-----~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvl  665 (741)
                      +.++.+.+..  ..+++|+||||+|||++.+.|++.+..-+.     ...++.++.    ....-       +++ .+-+
T Consensus       189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----g~~~~-------G~~-e~~l  256 (758)
T 3pxi_A          189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----GTKYR-------GEF-EDRL  256 (758)
T ss_dssp             HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------CTTH
T ss_pred             HHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----ccccc-------chH-HHHH
Confidence            5567777744  458999999999999999999999744221     122333333    01111       222 2334


Q ss_pred             HHHHHHhcCCCCCCCCCCeEEEEcCCCChhhhhhccccccCCcee
Q psy17620        666 SNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKIL  710 (741)
Q Consensus       666 s~i~R~~~~~~~~~~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L  710 (741)
                      ..++..+..      ..+..+++||..|.  ...|..+|+.+...
T Consensus       257 ~~~~~~~~~------~~~~iLfiD~~~~~--~~~L~~~l~~~~v~  293 (758)
T 3pxi_A          257 KKVMDEIRQ------AGNIILFIDAAIDA--SNILKPSLARGELQ  293 (758)
T ss_dssp             HHHHHHHHT------CCCCEEEECC----------CCCTTSSSCE
T ss_pred             HHHHHHHHh------cCCEEEEEcCchhH--HHHHHHHHhcCCEE
Confidence            556665543      24578999976653  44555666654433

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.10  E-value=0.017  Score=66.00  Aligned_cols=124  Identities=14%  Similarity=0.125  Sum_probs=59.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc-ccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-SVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~-t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      ...++|+||||+|||++.+.++..+.     .....++...+ ...+++|....- -....|-+...+.++..       
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~~~~~~~~g~~~~~-ig~~~~~~~~~~~~a~~-------  174 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGVRDESEIRGHRRTY-VGAMPGRIIQGMKKAGK-------  174 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC---------------------CHHHHHHTTCS-------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEecccchhhhhhhHHHHH-hccCchHHHHHHHHhhc-------
Confidence            44799999999999999999999874     23444544332 234555543211 11223444445554321       


Q ss_pred             CCeEEEEcC--CCChh----hhhhccccccCCceee-ccCCCeeecC-CCceEEEEeCCCCCCCCC
Q psy17620        682 ERKYILFDG--DVDAL----WIENMNSVMDDNKILT-LANGERIRLL-AHCQLLFEIHPIQSDSHP  739 (741)
Q Consensus       682 ~~~WIVfDG--~vd~~----wiE~LNsvLDdnk~L~-L~nGeri~l~-~~~rliFE~~~L~~aSPA  739 (741)
                      ..-.+++|-  .+.+.    -.+.|-.+||+...-. ...+.....+ +++.+|.-+..+....||
T Consensus       175 ~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~a  240 (543)
T 3m6a_A          175 LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGP  240 (543)
T ss_dssp             SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHH
T ss_pred             cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHH
Confidence            234788882  23333    2356667777532111 1122222222 567788777777666554

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.95  E-value=0.0073  Score=57.18  Aligned_cols=37  Identities=14%  Similarity=0.379  Sum_probs=29.1

Q ss_pred             HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +.++.+.+..  .++++|+||||+|||++.+.+++.+..
T Consensus        31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           31 IRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             HHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            4455555544  568999999999999999999998754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.91  E-value=0.014  Score=60.49  Aligned_cols=29  Identities=28%  Similarity=0.463  Sum_probs=24.3

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ....-+.|+||+||||||+++.|+..+..
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence            34456889999999999999999998754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.90  E-value=0.0029  Score=64.18  Aligned_cols=99  Identities=22%  Similarity=0.240  Sum_probs=53.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccc-c-CC-CCCcccChHHHHHHHhc--CCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVL-N-PE-TRDWYDGLLSNIFRAVN--KPLD  677 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~-d-~~-t~eW~DGvls~i~R~~~--~~~~  677 (741)
                      ..-|++.||+||||||+.+.|++.+.. |.++... -.|..-...+.+..+ . +. -..+...++-.+-|...  ....
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~-~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~  103 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT-REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI  103 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE-CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee-cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            345789999999999999999999976 6555332 234332222222221 1 10 01122222222223211  1000


Q ss_pred             CCCCCCeEEEEc----------C---CCChhhhhhcccc
Q psy17620        678 PGSKERKYILFD----------G---DVDALWIENMNSV  703 (741)
Q Consensus       678 ~~~~~~~WIVfD----------G---~vd~~wiE~LNsv  703 (741)
                      ......+|+|+|          |   .++..|++.|+..
T Consensus       104 ~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~  142 (229)
T 4eaq_A          104 PALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEF  142 (229)
T ss_dssp             HHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHH
T ss_pred             HHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHH
Confidence            001245899999          7   4788888888764

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.87  E-value=0.0063  Score=65.28  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=23.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .++++|+||||+|||++.+.+++.+.
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~~   70 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEIE   70 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999998763

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.85  E-value=0.02  Score=61.29  Aligned_cols=95  Identities=14%  Similarity=0.177  Sum_probs=51.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc-ccccccc-------ccccCCCCCcccChHHHHHHHhcCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA-VSVIELY-------GVLNPETRDWYDGLLSNIFRAVNKPL  676 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka-~t~~eLy-------G~~d~~t~eW~DGvls~i~R~~~~~~  676 (741)
                      .++|+||+|+|||++++.+++.+.... ...+..+|... .+..+++       |.-.+.+..-.+.++..+...+..  
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~--  122 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE--  122 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh--
Confidence            799999999999999999998875431 23444555222 2222222       211111111111223332222211  


Q ss_pred             CCCCCCCeEEEEcC--CCChhhhhhcccccc
Q psy17620        677 DPGSKERKYILFDG--DVDALWIENMNSVMD  705 (741)
Q Consensus       677 ~~~~~~~~WIVfDG--~vd~~wiE~LNsvLD  705 (741)
                         ...+..|++|.  .+|+...+.|-.+++
T Consensus       123 ---~~~~~vlilDE~~~l~~~~~~~L~~~~~  150 (389)
T 1fnn_A          123 ---RDLYMFLVLDDAFNLAPDILSTFIRLGQ  150 (389)
T ss_dssp             ---TTCCEEEEEETGGGSCHHHHHHHHHHTT
T ss_pred             ---cCCeEEEEEECccccchHHHHHHHHHHH
Confidence               12468999994  356777777766664

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.83  E-value=0.0035  Score=70.88  Aligned_cols=68  Identities=22%  Similarity=0.402  Sum_probs=43.6

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      ..++|+|+||||+|||++.+.+++.++     ..+..+|...+. .+++|..        .|.+..++..+..      .
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~vn~~~l~-~~~~g~~--------~~~~~~~f~~A~~------~  296 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPEIM-SKLAGES--------ESNLRKAFEEAEK------N  296 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCS-----SEEEEEEHHHHH-TSCTTHH--------HHHHHHHHHHHHH------T
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhC-----CCEEEEEchHhh-hhhcchh--------HHHHHHHHHHHHh------c
Confidence            457899999999999999999988752     345555544433 3344443        2334445554432      1


Q ss_pred             CCeEEEEc
Q psy17620        682 ERKYILFD  689 (741)
Q Consensus       682 ~~~WIVfD  689 (741)
                      .+..|++|
T Consensus       297 ~p~iLfLD  304 (489)
T 3hu3_A          297 APAIIFID  304 (489)
T ss_dssp             CSEEEEEE
T ss_pred             CCcEEEec
Confidence            34688899

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.81  E-value=0.013  Score=69.80  Aligned_cols=26  Identities=23%  Similarity=0.576  Sum_probs=23.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -.||+|+||||||||++.+.+++.++
T Consensus       238 p~GILL~GPPGTGKT~LAraiA~elg  263 (806)
T 3cf2_A          238 PRGILLYGPPGTGKTLIARAVANETG  263 (806)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            35999999999999999999998753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.80  E-value=0.0046  Score=58.71  Aligned_cols=26  Identities=31%  Similarity=0.600  Sum_probs=23.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|.|+||+||||||+.+.|++.+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            34689999999999999999999864

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.79  E-value=0.0058  Score=63.87  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=26.2

Q ss_pred             HHHHHhhccc--eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        595 QMYETMLTRH--STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       595 qL~e~l~~r~--gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +|.+.+....  .++++||+|+|||++.+.+++.+.
T Consensus        36 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           36 RLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             HHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            4444444432  499999999999999999999864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.79  E-value=0.0072  Score=58.02  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=26.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPAR  635 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~  635 (741)
                      -|+|.|+|||||||+.+.|++.+...|.++.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~   33 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNK   33 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCceEE
Confidence            4889999999999999999999876555443

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.76  E-value=0.01  Score=66.15  Aligned_cols=33  Identities=21%  Similarity=0.491  Sum_probs=27.1

Q ss_pred             HHHHhhc--cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        596 MYETMLT--RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       596 L~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +|+.+..  ..||+|+||||||||++.+++|..++
T Consensus       206 ~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          206 IFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             HHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            4554433  56999999999999999999999874

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.76  E-value=0.011  Score=60.39  Aligned_cols=101  Identities=20%  Similarity=0.268  Sum_probs=57.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccc-ccc--cCCCCCc---ccChHHHHHHHh--cC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELY-GVL--NPETRDW---YDGLLSNIFRAV--NK  674 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLy-G~~--d~~t~eW---~DGvls~i~R~~--~~  674 (741)
                      ..-|++.|++||||||..+.|++.+...|.++....=.|..-...+.+ +.+  ++...+|   ...++-.+-|..  ..
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~~  106 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVEN  106 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence            346889999999999999999999988887733344467544333332 222  2222223   222222222211  00


Q ss_pred             CCCCCCCCCeEEEEc----------C---CCChhhhhhcccc
Q psy17620        675 PLDPGSKERKYILFD----------G---DVDALWIENMNSV  703 (741)
Q Consensus       675 ~~~~~~~~~~WIVfD----------G---~vd~~wiE~LNsv  703 (741)
                      .....-...+|+|+|          |   .+|..|++.+|..
T Consensus       107 ~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~  148 (236)
T 3lv8_A          107 VIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQT  148 (236)
T ss_dssp             THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHH
Confidence            000001245899999          2   4678899888864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.72  E-value=0.013  Score=59.68  Aligned_cols=38  Identities=21%  Similarity=0.471  Sum_probs=28.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV  644 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~  644 (741)
                      ..++++|+||||+|||++.+.+++.+.   .  ....++...+
T Consensus        44 ~~~~vll~G~~GtGKT~la~~la~~~~---~--~~~~i~~~~~   81 (257)
T 1lv7_A           44 IPKGVLMVGPPGTGKTLLAKAIAGEAK---V--PFFTISGSDF   81 (257)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT---C--CEEEECSCSS
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHcC---C--CEEEEeHHHH
Confidence            356899999999999999999998763   2  2455555443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.68  E-value=0.0052  Score=60.60  Aligned_cols=27  Identities=26%  Similarity=0.605  Sum_probs=22.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||+++.|.+.+.
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            345789999999999999999998763

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.67  E-value=0.013  Score=57.96  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=27.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      ..++++|+||||+|||++.+.+++.+..-+.++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~   83 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRS   83 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            367999999999999999999999876544443

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=95.66  E-value=0.026  Score=61.26  Aligned_cols=116  Identities=18%  Similarity=0.297  Sum_probs=83.3

Q ss_pred             HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC-C--CCcccChHHHHHH
Q psy17620        598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE-T--RDWYDGLLSNIFR  670 (741)
Q Consensus       598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~-t--~eW~DGvls~i~R  670 (741)
                      ........|++.|++|+||+.+.+.+.....+-+   ....+|..+++.    .+|||+-... |  ..++.|.|..+  
T Consensus       147 ~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~---~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a--  221 (368)
T 3dzd_A          147 KIAKSKAPVLITGESGTGKEIVARLIHRYSGRKG---AFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELA--  221 (368)
T ss_dssp             HHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCS---CEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHT--
T ss_pred             hhhccchhheEEeCCCchHHHHHHHHHHhccccC---CcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhc--
Confidence            3445677899999999999999999988764432   266777777654    6789875321 1  24677877531  


Q ss_pred             HhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        671 AVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       671 ~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                                 .+--+++|  |.+++..-..|-.+|+++..-.+.+...  .+-++|+|+-|+
T Consensus       222 -----------~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~--~~~~~rii~at~  271 (368)
T 3dzd_A          222 -----------DQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQK--IEVDIRVISATN  271 (368)
T ss_dssp             -----------TTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCB--EECCCEEEEEES
T ss_pred             -----------CCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcc--eeeeeEEEEecC
Confidence                       12359999  8889999999999999887666655544  455799999876

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.66  E-value=0.015  Score=56.78  Aligned_cols=31  Identities=16%  Similarity=0.263  Sum_probs=26.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      .+++|+||||+|||++.+.++..+...+.++
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~   85 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS   85 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            7899999999999999999999876544443

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.60  E-value=0.011  Score=61.51  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ++++||+|+|||++.+.+++.+.
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~   67 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELL   67 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhc
Confidence            99999999999999999998864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.59  E-value=0.0088  Score=57.79  Aligned_cols=31  Identities=23%  Similarity=0.391  Sum_probs=26.0

Q ss_pred             HHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        598 ETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.|....-|+|+|++||||||+.+.|++.++
T Consensus         4 ~~m~~~~~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A            4 EKLKKTNIIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             HHHTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             hcCcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3455556799999999999999999998874

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.57  E-value=0.01  Score=65.36  Aligned_cols=34  Identities=21%  Similarity=0.560  Sum_probs=27.7

Q ss_pred             HHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        595 QMYETMLT--RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       595 qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ++|+.+..  ..||+|+||||||||++.+++|...+
T Consensus       172 e~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~  207 (405)
T 4b4t_J          172 ELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD  207 (405)
T ss_dssp             HHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence            34555444  46999999999999999999999874

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.57  E-value=0.021  Score=62.14  Aligned_cols=90  Identities=19%  Similarity=0.227  Sum_probs=47.3

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccC-CCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS  680 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~  680 (741)
                      ....+.|+||+||||||+++.|+..+... ...+.+. =+|-......-.|.+....-.-....|+..++.+-.      
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~-e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~------  207 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI-EDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR------  207 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEE-ESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEe-cccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh------
Confidence            34568899999999999999999987643 1222111 122211111111111100000011234555555432      


Q ss_pred             CCCeEEEEcCCCChhhhh
Q psy17620        681 KERKYILFDGDVDALWIE  698 (741)
Q Consensus       681 ~~~~WIVfDG~vd~~wiE  698 (741)
                      ..+..|++|-|-|++-++
T Consensus       208 ~~pd~illdE~~d~e~~~  225 (372)
T 2ewv_A          208 EDPDVIFVGEMRDLETVE  225 (372)
T ss_dssp             SCCSEEEESCCCSHHHHH
T ss_pred             hCcCEEEECCCCCHHHHH
Confidence            145799999998886443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.56  E-value=0.0062  Score=58.90  Aligned_cols=26  Identities=23%  Similarity=0.530  Sum_probs=22.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-++|+|||||||||+++.|++.+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            34688999999999999999998753

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.56  E-value=0.0062  Score=57.45  Aligned_cols=24  Identities=29%  Similarity=0.239  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|.|++||||||+.+.|++.++
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999998864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.0079  Score=66.80  Aligned_cols=27  Identities=22%  Similarity=0.634  Sum_probs=24.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...||+|+||||||||++.+++|..++
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            467999999999999999999999874

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.52  E-value=0.015  Score=61.96  Aligned_cols=42  Identities=19%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccC----CCCeEEEEeCCCc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVL----GYPARTYTLNPKA  643 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~~~~inpka  643 (741)
                      ..++++|+||||+|||++.+.+++.+...    +....+..+|...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   88 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH   88 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence            35689999999999999999999887432    2245566666443

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.51  E-value=0.013  Score=59.48  Aligned_cols=27  Identities=26%  Similarity=0.503  Sum_probs=23.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|++|+||||||||++.+.+++.+.
T Consensus        48 ~~~g~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           48 IPKGVLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            356899999999999999999998763

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.48  E-value=0.0064  Score=58.01  Aligned_cols=25  Identities=20%  Similarity=0.340  Sum_probs=22.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|+|+|||||||+.+.|++.+.
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4689999999999999999999864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.46  E-value=0.014  Score=60.52  Aligned_cols=39  Identities=26%  Similarity=0.453  Sum_probs=29.6

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS  645 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t  645 (741)
                      ..++++++||||+|||++.+.+++.+.     .....++...+.
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~-----~~~~~i~~~~~~   87 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFT   87 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEcchhcc
Confidence            357899999999999999999999873     234455544443

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.44  E-value=0.011  Score=56.77  Aligned_cols=29  Identities=14%  Similarity=0.203  Sum_probs=24.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGY  632 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~  632 (741)
                      .-|+|.|+|||||||+.+.|++.++..|.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~   32 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV   32 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence            46899999999999999999998875443

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.0089  Score=66.48  Aligned_cols=27  Identities=22%  Similarity=0.523  Sum_probs=24.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...||+|+||||||||++.+++|...+
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            357999999999999999999999874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.42  E-value=0.0065  Score=63.26  Aligned_cols=27  Identities=30%  Similarity=0.578  Sum_probs=24.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|++|+||||||||++.++++..+.
T Consensus        43 ~~~GvlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           43 TPAGVLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence            467899999999999999999998753

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.40  E-value=0.014  Score=61.20  Aligned_cols=27  Identities=22%  Similarity=0.538  Sum_probs=24.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..++|+|+||||||||++.+.+++.+.
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            357899999999999999999998763

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.37  E-value=0.012  Score=58.30  Aligned_cols=40  Identities=28%  Similarity=0.445  Sum_probs=29.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK  642 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk  642 (741)
                      ..-|.|+||+||||||+.+.|+..+...|...-...++..
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            4467899999999999999999998643333344444443

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.35  E-value=0.013  Score=59.42  Aligned_cols=27  Identities=22%  Similarity=0.585  Sum_probs=24.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+++|+||||+|||++.+.+++.+.
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999998763

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.33  E-value=0.025  Score=61.47  Aligned_cols=67  Identities=21%  Similarity=0.408  Sum_probs=41.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE  682 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~  682 (741)
                      .++|+|+||||+|||++.+.++..+.     ..++.+++..     +.|.+-..    ..+.+..++..+..      ..
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~-----~~~~~v~~~~-----l~~~~~g~----~~~~~~~~~~~a~~------~~  207 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESN-----ATFFNISAAS-----LTSKYVGE----GEKLVRALFAVARE------LQ  207 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEECSCC-----C-----------CHHHHHHHHHHHHH------SS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhc-----CcEEEeeHHH-----hhccccch----HHHHHHHHHHHHHh------cC
Confidence            47999999999999999999988753     3566666643     33332111    12334455554432      13


Q ss_pred             CeEEEEc
Q psy17620        683 RKYILFD  689 (741)
Q Consensus       683 ~~WIVfD  689 (741)
                      ...|++|
T Consensus       208 ~~il~iD  214 (389)
T 3vfd_A          208 PSIIFID  214 (389)
T ss_dssp             SEEEEEE
T ss_pred             CeEEEEE
Confidence            4689999

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.31  E-value=0.008  Score=58.61  Aligned_cols=26  Identities=35%  Similarity=0.585  Sum_probs=22.6

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ...-+.|+||+||||||+.+.|++.+
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34568899999999999999999875

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=95.25  E-value=0.037  Score=60.40  Aligned_cols=117  Identities=21%  Similarity=0.281  Sum_probs=81.3

Q ss_pred             HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC-C--CCcccChHHHHHH
Q psy17620        598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE-T--RDWYDGLLSNIFR  670 (741)
Q Consensus       598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~-t--~eW~DGvls~i~R  670 (741)
                      .......+|++.|++|+||+++.+.+......-+.  ....+|..+++.    .+|||+-..+ |  ..++.|.|..+  
T Consensus       155 ~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~--~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a--  230 (387)
T 1ny5_A          155 KISCAECPVLITGESGVGKEVVARLIHKLSDRSKE--PFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELA--  230 (387)
T ss_dssp             HHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTS--CEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHT--
T ss_pred             HhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCC--CeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeC--
Confidence            34456779999999999999999998877543322  345667666653    6889974221 1  13567766541  


Q ss_pred             HhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        671 AVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       671 ~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                                 .+-.++||  |.+++..-..|-.+|++.+.-.+  |..-..+.++|+|+-|.
T Consensus       231 -----------~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~--g~~~~~~~~~rii~at~  280 (387)
T 1ny5_A          231 -----------DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRL--GGRKEIEVNVRILAATN  280 (387)
T ss_dssp             -----------TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCB--TCCSBEECCCEEEEEES
T ss_pred             -----------CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeC--CCCceeeccEEEEEeCC
Confidence                       23589999  78899888889999988765444  44445566899998775

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.25  E-value=0.0074  Score=58.25  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ...+.|+||+||||||+.+.|++.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            345889999999999999999875

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.24  E-value=0.041  Score=61.19  Aligned_cols=68  Identities=21%  Similarity=0.415  Sum_probs=40.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE  682 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~  682 (741)
                      .++|+|+||||+|||++.+.++..+.    ...+..+++..     +.+.+-..    ....+..++..+..      ..
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~~~-----l~~~~~g~----~~~~~~~~f~~a~~------~~  227 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSSD-----LVSKWLGE----SEKLVKNLFQLARE------NK  227 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECCC------------------CCCTHHHHHHHHHH------SC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeHHH-----HHhhhcch----HHHHHHHHHHHHHH------cC
Confidence            47999999999999999999998862    12445555433     33222111    12344555554432      24


Q ss_pred             CeEEEEc
Q psy17620        683 RKYILFD  689 (741)
Q Consensus       683 ~~WIVfD  689 (741)
                      +..|++|
T Consensus       228 ~~vl~iD  234 (444)
T 2zan_A          228 PSIIFID  234 (444)
T ss_dssp             SEEEEES
T ss_pred             CeEEEEe
Confidence            5789999

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.23  E-value=0.017  Score=64.07  Aligned_cols=33  Identities=24%  Similarity=0.538  Sum_probs=26.9

Q ss_pred             HHHHhhc--cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        596 MYETMLT--RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       596 L~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +|+.+..  ..||+|+||||||||++.+++|...+
T Consensus       207 ~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~  241 (437)
T 4b4t_I          207 LYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS  241 (437)
T ss_dssp             HHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred             HHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence            4444433  57999999999999999999999874

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=95.22  E-value=0.024  Score=65.51  Aligned_cols=87  Identities=18%  Similarity=0.268  Sum_probs=59.1

Q ss_pred             cCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCC----------CchH
Q psy17620        421 CGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRT----------ELPE  490 (741)
Q Consensus       421 ~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~----------eLP~  490 (741)
                      .|..+|+|||++++.++.+.+       ..++..+.-.+.-.|....++..+.+++|+||.+ |+-          .||+
T Consensus       391 ~~gil~IDEid~l~~~~q~~L-------l~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~-G~~~~~~~~~~ni~l~~  462 (595)
T 3f9v_A          391 DGGIAVIDEIDKMRDEDRVAI-------HEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKF-GRYISERPVSDNINLPP  462 (595)
T ss_dssp             SSSEECCTTTTCCCSHHHHHH-------HHHHHSSSEEEESSSSEEEECCCCEEEEEECCTT-CCSCTTSCSCTTTCSCS
T ss_pred             CCCcEEeehhhhCCHhHhhhh-------HHHHhCCEEEEecCCcEEEecCceEEEEEcCCcC-CccCcccCchhccCCCH
Confidence            467899999999999887765       3444433333333488888999999999999953 333          8999


Q ss_pred             HHhhcce--eeeccCCCHH--HHHHHHHh
Q psy17620        491 SVKALFR--PVVCIVPDFE--LICQIMLF  515 (741)
Q Consensus       491 nLk~lFR--pvam~~PD~~--~I~ei~L~  515 (741)
                      .|...|-  -+....||.+  .|++..+.
T Consensus       463 aLl~RFDl~~~~~~~~~~e~~~i~~~il~  491 (595)
T 3f9v_A          463 TILSRFDLIFILKDQPGEQDRELANYILD  491 (595)
T ss_dssp             SSGGGCSCCEEECCTTHHHHHHHHHHHHT
T ss_pred             HHHhhCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            9999883  3334445433  34444443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.21  E-value=0.01  Score=58.11  Aligned_cols=27  Identities=19%  Similarity=0.317  Sum_probs=23.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....|+|+|||||||||+.+.|++.++
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            445799999999999999999998873

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.18  E-value=0.021  Score=55.56  Aligned_cols=41  Identities=12%  Similarity=0.123  Sum_probs=32.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      ...++++|++||||||+++.|...+...|.++-.....|..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            35688999999999999999999887666666666655544

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.18  E-value=0.043  Score=58.40  Aligned_cols=27  Identities=26%  Similarity=0.430  Sum_probs=24.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      .|.++++||+|+|||++.+.+++.+..
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            467999999999999999999998753

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.16  E-value=0.0099  Score=57.87  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -+.|+||+||||||+++.+++.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            368999999999999999999874

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.14  E-value=0.023  Score=61.15  Aligned_cols=26  Identities=23%  Similarity=0.556  Sum_probs=23.7

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..++|+|+||||+|||++.+.+++.+
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            36799999999999999999999876

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.13  E-value=0.011  Score=56.67  Aligned_cols=26  Identities=27%  Similarity=0.409  Sum_probs=23.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|+|+|+|||||||+.+.|++.++
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999998874

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.12  E-value=0.01  Score=57.10  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=22.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-|+|+|+|||||||+.+.|++.++
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l~   30 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGLR   30 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            34689999999999999999998873

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.11  E-value=0.036  Score=63.82  Aligned_cols=93  Identities=15%  Similarity=0.203  Sum_probs=56.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC------------CccccccccccccCCCCCcccChHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP------------KAVSVIELYGVLNPETRDWYDGLLSNIF  669 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp------------ka~t~~eLyG~~d~~t~eW~DGvls~i~  669 (741)
                      .+..++|.||||||||++++.+...+...|.++....-..            .+.|...++|.. + + .+.        
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~-~-~-~~~--------  271 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYG-P-Q-GFR--------  271 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEE-T-T-EES--------
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCC-c-c-hhh--------
Confidence            4678899999999999999999998877665554332222            122333333332 1 1 111        


Q ss_pred             HHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCcee
Q psy17620        670 RAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKIL  710 (741)
Q Consensus       670 R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L  710 (741)
                          .. .........||.|  +.+|..+.+.|-+.+.++..+
T Consensus       272 ----~~-~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~l  309 (574)
T 3e1s_A          272 ----HN-HLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARV  309 (574)
T ss_dssp             ----CS-SSSCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEE
T ss_pred             ----hh-hcccccCCEEEEcCccCCCHHHHHHHHHhCcCCCEE
Confidence                00 0112345799999  788998888876666544333

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.09  E-value=0.011  Score=58.13  Aligned_cols=27  Identities=26%  Similarity=0.271  Sum_probs=23.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ..-|.|+||+||||||+.+.|++.+..
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l~~   51 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQMLYQ   51 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            446889999999999999999998863

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.07  E-value=0.01  Score=55.56  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=19.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .-|+|+|||||||||+.+.| +.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC
Confidence            35889999999999999999 544

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.06  E-value=0.021  Score=55.43  Aligned_cols=40  Identities=18%  Similarity=0.246  Sum_probs=31.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      ..+.++|++||||||++..|+..+...|.++-+....|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~   44 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG   44 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence            4688999999999999999999988777776666655543

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.05  E-value=0.0093  Score=58.72  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=23.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...-++|+|||||||||+.+.|++.+.
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            344789999999999999999998763

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.05  E-value=0.01  Score=56.32  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      .-|+|+|+|||||||+.+.|++
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3588999999999999999998

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.02  E-value=0.012  Score=56.38  Aligned_cols=26  Identities=23%  Similarity=0.494  Sum_probs=22.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-|+|+|++||||||+.+.|++.++
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l~   29 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQELG   29 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34689999999999999999998763

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.00  E-value=0.042  Score=58.32  Aligned_cols=24  Identities=33%  Similarity=0.587  Sum_probs=21.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .| ++++||+|+||||+.+.+++.+
T Consensus        37 ~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           37 PH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence            45 9999999999999999999965

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.00  E-value=0.012  Score=59.59  Aligned_cols=33  Identities=24%  Similarity=0.568  Sum_probs=22.9

Q ss_pred             HHHHhhcc-ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        596 MYETMLTR-HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       596 L~e~l~~r-~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .++.|..+ .-+.|+||+||||||+.+.|++.++
T Consensus        19 ~~~~~~~~~~~i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           19 YFQSMASKLLRAVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             -------CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             HHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34444444 4688999999999999999998764

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.99  E-value=0.028  Score=62.79  Aligned_cols=25  Identities=28%  Similarity=0.650  Sum_probs=22.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ++++|+||||+|||++.+.+++.+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhC
Confidence            5799999999999999999999863

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=94.99  E-value=0.012  Score=58.42  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=22.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..-|.|+||+||||||+.+.|++.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468899999999999999999876

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.98  E-value=0.02  Score=56.12  Aligned_cols=31  Identities=26%  Similarity=0.252  Sum_probs=27.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      .-|+|+|++||||||+.+.|++.+...+.++
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v   40 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRA   40 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence            4589999999999999999999987666665

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=94.98  E-value=0.02  Score=61.02  Aligned_cols=43  Identities=7%  Similarity=0.043  Sum_probs=31.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCC----C-CeEEEEeCCCccc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLG----Y-PARTYTLNPKAVS  645 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~----~-~~~~~~inpka~t  645 (741)
                      ..+++|+||||+|||++++.+++.+....    . .+.+..+|-..++
T Consensus        45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~   92 (318)
T 3te6_A           45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA   92 (318)
T ss_dssp             CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence            45799999999999999999999885431    1 3566677754433

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.97  E-value=0.012  Score=57.71  Aligned_cols=24  Identities=17%  Similarity=0.544  Sum_probs=22.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .-+.|+||+||||||+.+.|++.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh
Confidence            468899999999999999999887

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=94.97  E-value=0.011  Score=58.15  Aligned_cols=24  Identities=33%  Similarity=0.624  Sum_probs=21.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +.|+|+||||+||||+.+.|.+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998765

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.95  E-value=0.012  Score=57.49  Aligned_cols=24  Identities=33%  Similarity=0.530  Sum_probs=22.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|+|++||||||+.+.|++.++
T Consensus        20 ~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           20 SIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999999873

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.92  E-value=0.023  Score=63.34  Aligned_cols=30  Identities=23%  Similarity=0.490  Sum_probs=26.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGY  632 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~  632 (741)
                      +..++|.|+||||||+++..+++.+...+.
T Consensus        45 ~~~~li~G~aGTGKT~ll~~~~~~l~~~~~   74 (459)
T 3upu_A           45 KHHVTINGPAGTGATTLTKFIIEALISTGE   74 (459)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence            348999999999999999999999876654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.89  E-value=0.013  Score=58.99  Aligned_cols=29  Identities=38%  Similarity=0.584  Sum_probs=23.7

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |.....+.|+||+||||||+++.|.+...
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            44455789999999999999999998764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=94.87  E-value=0.012  Score=58.24  Aligned_cols=26  Identities=31%  Similarity=0.472  Sum_probs=22.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-++|+||+||||||+.+.|++.+.
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34588999999999999999998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=94.86  E-value=0.012  Score=57.23  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=22.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..-+.|+||+||||||+.+.|++.+
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3458899999999999999999876

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.84  E-value=0.014  Score=55.57  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=21.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..+.|+||+||||||+.+.|++.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhh
Confidence            468899999999999999999876

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.84  E-value=0.013  Score=56.05  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=23.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|+|+|+|||||||+.+.|++.++
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~~   36 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKSG   36 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence            34699999999999999999998874

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.83  E-value=0.014  Score=55.67  Aligned_cols=24  Identities=33%  Similarity=0.502  Sum_probs=22.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|+|+|+|||||||+.+.|++.++
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            588999999999999999999874

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.83  E-value=0.022  Score=54.67  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=26.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      -|.|.|++||||||+.+.|++.+...|.++..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~   33 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL   33 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            37899999999999999999988655655443

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.83  E-value=0.024  Score=60.24  Aligned_cols=25  Identities=28%  Similarity=0.566  Sum_probs=23.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .++|+|+||||+|||++.+.+++.+
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCccHHHHHHHHHHHc
Confidence            4799999999999999999999876

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=94.82  E-value=0.012  Score=60.75  Aligned_cols=27  Identities=26%  Similarity=0.503  Sum_probs=23.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|++|+|||||||||+.+.++..+.
T Consensus        72 ~~~gvll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           72 IPKGVLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCcChHHHHHHHHHHHcC
Confidence            356899999999999999999998763

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.82  E-value=0.024  Score=60.09  Aligned_cols=26  Identities=27%  Similarity=0.543  Sum_probs=23.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .++++|+||||+|||++.+.+++.+.
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            46899999999999999999998863

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=94.82  E-value=0.014  Score=57.60  Aligned_cols=28  Identities=25%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .....+.|+||+||||||++++|+..+.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3455688999999999999999998863

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=94.80  E-value=0.021  Score=55.10  Aligned_cols=31  Identities=23%  Similarity=0.365  Sum_probs=26.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      .-|+|+|++||||||+.+.|++.+...|.++
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~   44 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRV   44 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            4588999999999999999999987655444

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=94.79  E-value=0.023  Score=53.48  Aligned_cols=30  Identities=27%  Similarity=0.370  Sum_probs=25.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      ....+.|+||+|+|||++.+.++..+..-|
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g   64 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG   64 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            456899999999999999999999875433

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.78  E-value=0.016  Score=64.67  Aligned_cols=27  Identities=22%  Similarity=0.530  Sum_probs=24.6

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...||+|+||||||||++.+++|..++
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~  268 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTD  268 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccC
Confidence            467999999999999999999998874

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.77  E-value=0.023  Score=55.54  Aligned_cols=33  Identities=18%  Similarity=0.103  Sum_probs=27.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR  635 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~  635 (741)
                      ..-|+|.|++||||||+.+.|++.++..+..+.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~   42 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK   42 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence            346899999999999999999998876555553

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.76  E-value=0.014  Score=56.50  Aligned_cols=23  Identities=35%  Similarity=0.484  Sum_probs=20.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .+.|+||+||||||+.+.|++..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~~   26 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQL   26 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            47899999999999999998743

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.73  E-value=0.04  Score=58.97  Aligned_cols=29  Identities=21%  Similarity=0.450  Sum_probs=25.0

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.....+.|+||+||||||+++.|+..+.
T Consensus       168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HHHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            34577899999999999999999988764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.71  E-value=0.023  Score=61.23  Aligned_cols=26  Identities=27%  Similarity=0.543  Sum_probs=23.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .++|+|+||||+|||++.+.+++.+.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhC
Confidence            56899999999999999999999873

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.71  E-value=0.028  Score=59.17  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=26.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP  641 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp  641 (741)
                      .|.+++.||||+|||++.+.+++.+.     ..+..+|+
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~   81 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNG   81 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEET
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcc
Confidence            35778888899999999999998863     45555664

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.70  E-value=0.016  Score=56.20  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|.|+|++||||||+.+.|++.++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            478999999999999999999875

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=94.70  E-value=0.061  Score=57.29  Aligned_cols=28  Identities=25%  Similarity=0.322  Sum_probs=25.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ..|+++++||+|+|||++.+.+++++..
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            3678999999999999999999998753

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.68  E-value=0.016  Score=60.24  Aligned_cols=25  Identities=40%  Similarity=0.686  Sum_probs=22.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -.++|+||+|+||||++++|.....
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3689999999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.67  E-value=0.017  Score=56.76  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|.|+||+||||||+.+.|++.+.
T Consensus         8 ~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            8 VIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            477999999999999999999874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.66  E-value=0.015  Score=58.15  Aligned_cols=26  Identities=31%  Similarity=0.510  Sum_probs=22.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ....+.|+||+||||||+++.|+..+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34568899999999999999999875

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=94.65  E-value=0.021  Score=55.28  Aligned_cols=29  Identities=24%  Similarity=0.361  Sum_probs=24.6

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +....-|+|+|+|||||||+.+.|++.++
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34455799999999999999999999874

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.53  E-value=0.018  Score=54.38  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=22.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|.|++||||||+.+.|++.++
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.52  E-value=0.018  Score=56.79  Aligned_cols=23  Identities=17%  Similarity=0.446  Sum_probs=21.1

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|.|||||||||+.+.|++.++
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999988763

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=94.51  E-value=0.019  Score=55.17  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=22.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|+|+|||||||+.+.|++.++
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~~   28 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKYG   28 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4589999999999999999998764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.45  E-value=0.02  Score=56.98  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=22.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|+|||||||||+.+.|++.++
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999999874

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=94.43  E-value=0.026  Score=60.24  Aligned_cols=25  Identities=20%  Similarity=0.480  Sum_probs=23.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.++|+||||+||||+.+++++.++
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            5699999999999999999999874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.41  E-value=0.021  Score=54.67  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|+|++||||||+.+.|++.++
T Consensus         8 ~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            8 VVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999998864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.38  E-value=0.021  Score=54.83  Aligned_cols=24  Identities=33%  Similarity=0.486  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|+|+|+|||||||+-+.|++.++
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999999864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=94.38  E-value=0.021  Score=56.82  Aligned_cols=26  Identities=31%  Similarity=0.620  Sum_probs=22.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...++|+||+|+||||+++.|.+...
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            45788999999999999999998753

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.37  E-value=0.16  Score=60.01  Aligned_cols=37  Identities=16%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +.++.+.+..  ..+++|+||||+|||++.+.++..+..
T Consensus       195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~  233 (758)
T 1r6b_X          195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ  233 (758)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence            5556666544  457999999999999999999998754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.31  E-value=0.02  Score=56.58  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.8

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|.|||||||||+.+.|++.++
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKYG   25 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999988763

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.30  E-value=0.02  Score=55.46  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=27.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK  642 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk  642 (741)
                      ..+.|+|++||||||+++.|...+...|.+.-...+++.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~   41 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH   41 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence            357899999999999999999998765444434444443

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.30  E-value=0.024  Score=53.64  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=22.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.|.|.|++||||||+-+.|++.++
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3789999999999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.29  E-value=0.011  Score=58.07  Aligned_cols=27  Identities=26%  Similarity=0.379  Sum_probs=23.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      -|.|+|++||||||+.+.|++.+...|
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g   28 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAG   28 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence            478999999999999999999986544

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=94.26  E-value=0.018  Score=55.02  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=18.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|.|++||||||+.+.|++.++
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4688999999999999999998764

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.26  E-value=0.1  Score=62.84  Aligned_cols=52  Identities=17%  Similarity=0.362  Sum_probs=34.9

Q ss_pred             HHHHHHHhhcc--ceEEEEecCCCChhHHHHHHHHHhccCC-----CCeEEEEeCCCcc
Q psy17620        593 VVQMYETMLTR--HSTMIVGPTGGGKSVVINALVKTSTVLG-----YPARTYTLNPKAV  644 (741)
Q Consensus       593 v~qL~e~l~~r--~gv~lvGp~gsGKTt~~~~L~~a~~~~~-----~~~~~~~inpka~  644 (741)
                      +.++.+.+..+  ++++|+||||+|||++.+.++..+..-.     ....+..++..++
T Consensus       179 i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l  237 (854)
T 1qvr_A          179 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL  237 (854)
T ss_dssp             HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---
T ss_pred             HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh
Confidence            55666666543  4799999999999999999999874321     1345556665444

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.25  E-value=0.023  Score=53.44  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|.|++||||||+.+.|++.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999999864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.24  E-value=0.023  Score=55.52  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|+|+|||||||+.+.|++.++
T Consensus        22 ~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           22 RVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999998864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.23  E-value=0.022  Score=56.95  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=22.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|+|+|||||||+.+.|++.++
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999998763

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.20  E-value=0.037  Score=52.91  Aligned_cols=30  Identities=30%  Similarity=0.433  Sum_probs=24.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      .-|.|+|++||||||+.+.|++.+...|.+
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~   35 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIP   35 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhhCCCc
Confidence            457899999999999999999987544444

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.18  E-value=0.024  Score=58.20  Aligned_cols=85  Identities=15%  Similarity=0.268  Sum_probs=50.7

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      ..++++|+||||+|||++.+.+++...   .+  ...++.    .++++|....    -..+.+..++..+..      .
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~---~~--~~~i~~----~~~~~g~~~~----~~~~~~~~~~~~~~~------~  123 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESN---FP--FIKICS----PDKMIGFSET----AKCQAMKKIFDDAYK------S  123 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHT---CS--EEEEEC----GGGCTTCCHH----HHHHHHHHHHHHHHT------S
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhC---CC--EEEEeC----HHHhcCCchH----HHHHHHHHHHHHHHh------c
Confidence            457899999999999999999999853   23  233332    1355654211    111233444544422      2


Q ss_pred             CCeEEEEcCC------------CChhhhhhcccccc
Q psy17620        682 ERKYILFDGD------------VDALWIENMNSVMD  705 (741)
Q Consensus       682 ~~~WIVfDG~------------vd~~wiE~LNsvLD  705 (741)
                      ....|++|.-            ....+.+.|...++
T Consensus       124 ~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~  159 (272)
T 1d2n_A          124 QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLK  159 (272)
T ss_dssp             SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTT
T ss_pred             CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhc
Confidence            4579999931            23456666666665

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=94.16  E-value=0.037  Score=54.36  Aligned_cols=34  Identities=24%  Similarity=0.247  Sum_probs=26.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEE
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY  637 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~  637 (741)
                      .-|.|+|++||||||+.+.|+..+...+.++...
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~   56 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF   56 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence            3588999999999999999999876555554443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.14  E-value=0.024  Score=56.27  Aligned_cols=25  Identities=24%  Similarity=0.441  Sum_probs=22.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|+|+|||||||+.+.|++.++
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3588999999999999999999874

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=94.14  E-value=0.021  Score=54.77  Aligned_cols=19  Identities=26%  Similarity=0.569  Sum_probs=17.0

Q ss_pred             ceEEEEecCCCChhHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINA  622 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~  622 (741)
                      .-+.|+||+||||||+.+.
T Consensus        10 ei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHH
Confidence            4578999999999999994

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.08  E-value=0.034  Score=58.71  Aligned_cols=51  Identities=27%  Similarity=0.312  Sum_probs=34.1

Q ss_pred             HHHHHHHhhcc--ceEEEEecCCCChhHHHHHHHHHhccC-CCCeEEEEeCCCc
Q psy17620        593 VVQMYETMLTR--HSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKA  643 (741)
Q Consensus       593 v~qL~e~l~~r--~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~~~inpka  643 (741)
                      +.+|...+...  ..++|+||||+|||++.+.+++.+..- .....+..+||..
T Consensus        46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~   99 (353)
T 1sxj_D           46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD   99 (353)
T ss_dssp             HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence            44566665554  449999999999999999999986421 1122344555543

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=94.08  E-value=0.036  Score=58.66  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=27.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEE
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY  637 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~  637 (741)
                      ..++|+||+||||||+++.|+..+...+..+.+.
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~  136 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC  136 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            4788999999999999999999887655444443

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=94.07  E-value=0.033  Score=58.71  Aligned_cols=29  Identities=24%  Similarity=0.384  Sum_probs=24.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      .++++|+||||+|||++.+.+++.+...+
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~   65 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRG   65 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            36899999999999999999999875433

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=94.04  E-value=0.025  Score=57.96  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -++|+|||||||||+.+.|++.++
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCC
Confidence            478999999999999999998864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.04  E-value=0.027  Score=60.14  Aligned_cols=25  Identities=20%  Similarity=0.460  Sum_probs=23.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ++++|+||||+|||++.+.+++.+.
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            6899999999999999999999875

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.03  E-value=0.063  Score=56.72  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=28.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc-cCCCCeEE
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST-VLGYPART  636 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~-~~~~~~~~  636 (741)
                      ..+++|+||||+|||++.+.++..+. ..|.++.+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~  186 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTL  186 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEE
Confidence            57999999999999999999999887 66655543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.02  E-value=0.022  Score=55.43  Aligned_cols=25  Identities=12%  Similarity=0.153  Sum_probs=22.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..-|+|.|++||||||+.+.|++.+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999999876

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=94.02  E-value=0.025  Score=57.86  Aligned_cols=26  Identities=27%  Similarity=0.493  Sum_probs=22.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|.|+||+||||||+.+.|++.++
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg   52 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLN   52 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            44688999999999999999997653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=93.98  E-value=0.025  Score=59.17  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..|+|+|||||||||+.+.|++.+
T Consensus        34 ~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998875

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=93.96  E-value=0.027  Score=54.44  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=21.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..|+|+|++||||||+.+.|++.
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999987

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=93.93  E-value=0.024  Score=56.89  Aligned_cols=26  Identities=19%  Similarity=0.342  Sum_probs=23.3

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .+++++++||||+|||+....|++.+
T Consensus        57 kkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           57 KKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999999886

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=93.91  E-value=0.046  Score=58.51  Aligned_cols=38  Identities=24%  Similarity=0.285  Sum_probs=30.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN  640 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~in  640 (741)
                      ...++|+||+||||||+++.|+..+...+..+.+.-.+
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D  166 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD  166 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence            45788999999999999999999887666555544433

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=93.90  E-value=0.03  Score=55.37  Aligned_cols=24  Identities=13%  Similarity=0.272  Sum_probs=21.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|.|+|||||||+.+.|++.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g   25 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            378999999999999999999763

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.89  E-value=0.04  Score=55.01  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=23.8

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHH
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +.....+.|+||+||||||++++++..
T Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            355667899999999999999999987

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=93.83  E-value=0.028  Score=54.79  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=21.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|.|++||||||+.+.|++.++
T Consensus        17 ~I~l~G~~GsGKsT~~~~L~~~~g   40 (203)
T 1ukz_A           17 VIFVLGGPGAGKGTQCEKLVKDYS   40 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            588999999999999999998753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=93.82  E-value=0.03  Score=55.82  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=21.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -++|.|||||||+|..+.|++.++
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            378999999999999999999874

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.79  E-value=0.04  Score=58.53  Aligned_cols=27  Identities=26%  Similarity=0.415  Sum_probs=23.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      .+.++|+||+|+|||++++.+++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999987643

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=93.78  E-value=0.031  Score=53.33  Aligned_cols=25  Identities=16%  Similarity=0.327  Sum_probs=22.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ...+.|+||.||||||+++.++..+
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3357899999999999999999987

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=93.75  E-value=0.043  Score=57.97  Aligned_cols=31  Identities=32%  Similarity=0.448  Sum_probs=25.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      ...++|+||+||||||+++.|+..+...+..
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~  130 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK  130 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCe
Confidence            3468899999999999999999987654433

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=93.71  E-value=0.049  Score=58.63  Aligned_cols=41  Identities=27%  Similarity=0.388  Sum_probs=30.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV  644 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~  644 (741)
                      ..|.|+|+||+||||+++.|...+...+.++.+...+|.+.
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~  115 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC  115 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence            35789999999999999999998766556666666666543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=93.70  E-value=0.034  Score=56.06  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=22.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -..|+|.|||||||+|..+.|++.++
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            34678899999999999999999874

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=93.70  E-value=0.02  Score=57.30  Aligned_cols=24  Identities=33%  Similarity=0.540  Sum_probs=15.2

Q ss_pred             ceEEEEecCCCChhHHHHHHH-HHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALV-KTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~-~a~  627 (741)
                      .-+.|+||+||||||+.+.|+ +.+
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            357899999999999999999 765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=93.69  E-value=0.026  Score=55.23  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=19.4

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      .|.|+||+||||||+.+.|++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999986

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=93.69  E-value=0.033  Score=55.65  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=21.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|.|++||||||+.+.|++.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            378999999999999999998873

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=93.68  E-value=0.032  Score=54.42  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=20.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      -|.|+|++||||||+.+.|++ +
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-L   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-T
T ss_pred             EEEEECCCCcCHHHHHHHHHH-C
Confidence            478999999999999999998 5

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.67  E-value=0.035  Score=55.16  Aligned_cols=24  Identities=21%  Similarity=0.410  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|.|+|||||||+.+.|++.++
T Consensus         7 ~I~l~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            7 NLILIGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999874

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.64  E-value=0.054  Score=52.81  Aligned_cols=59  Identities=8%  Similarity=0.110  Sum_probs=37.3

Q ss_pred             CCeEEEEc--CCCChhhhhhccccccCCceeecc--C----CCeeecCCC----ceEEEEeCCCCC--C-CCCC
Q psy17620        682 ERKYILFD--GDVDALWIENMNSVMDDNKILTLA--N----GERIRLLAH----CQLLFEIHPIQS--D-SHPR  740 (741)
Q Consensus       682 ~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~--n----Geri~l~~~----~rliFE~~~L~~--a-SPAt  740 (741)
                      ....|++|  ..+++.|++.|+.+.|++..+.+.  +    |+-+..++.    .-.+.|+..+.+  - .|||
T Consensus        76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ic~~cg~~~a~  149 (184)
T 2orw_A           76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNAT  149 (184)
T ss_dssp             TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCBCCTTTCCSCBC
T ss_pred             CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEeeeecCCCCCeece
Confidence            35799999  567788999999999887655442  1    122222221    235678877765  2 5665

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.55  E-value=0.053  Score=57.64  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=21.7

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ++++||+|+||||+.+.+++.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            89999999999999999999874

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.53  E-value=0.037  Score=54.41  Aligned_cols=24  Identities=25%  Similarity=0.511  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+.|+||+||||||+++.|+..+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            478999999999999999999875

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=93.47  E-value=0.061  Score=53.85  Aligned_cols=99  Identities=23%  Similarity=0.250  Sum_probs=56.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccc--cCCCCCccc---ChHHHHHHHh--cCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVL--NPETRDWYD---GLLSNIFRAV--NKPL  676 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~--d~~t~eW~D---Gvls~i~R~~--~~~~  676 (741)
                      .-|++.|++||||||..+.|++.+...|.++.. .=.|..-...+....+  ++...+|.+   .++-.+-|.-  ....
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~-~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~i   85 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL-TREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVI   85 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE-EESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHTH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc-ccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            457789999999999999999999887777643 3356533332222221  222223332   2222222211  0000


Q ss_pred             CCCCCCCeEEEEc----------C---CCChhhhhhcccc
Q psy17620        677 DPGSKERKYILFD----------G---DVDALWIENMNSV  703 (741)
Q Consensus       677 ~~~~~~~~WIVfD----------G---~vd~~wiE~LNsv  703 (741)
                      ...-...+|+|+|          |   .+|..|++.+|..
T Consensus        86 ~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~  125 (213)
T 4edh_A           86 RPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESF  125 (213)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred             HHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHH
Confidence            0001245899999          2   3677899888864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=93.46  E-value=0.028  Score=57.15  Aligned_cols=26  Identities=31%  Similarity=0.500  Sum_probs=22.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            34578999999999999999987654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=93.46  E-value=0.048  Score=53.81  Aligned_cols=31  Identities=16%  Similarity=0.105  Sum_probs=25.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc-cCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST-VLGYP  633 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~-~~~~~  633 (741)
                      ..-|+|+|++||||||+.+.|++.+. ..|.+
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~   56 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVH   56 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhccccCCc
Confidence            44688999999999999999999886 33433

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=93.46  E-value=0.19  Score=58.15  Aligned_cols=43  Identities=28%  Similarity=0.427  Sum_probs=30.9

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhccC--CCCeEEEEeCCC
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVL--GYPARTYTLNPK  642 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~--~~~~~~~~inpk  642 (741)
                      ...+.-+++.|+||||||+++..+..++..+  +....+..+-|.
T Consensus       161 ~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APT  205 (608)
T 1w36_D          161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPT  205 (608)
T ss_dssp             HHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSS
T ss_pred             HhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCC
Confidence            3457789999999999999999888887643  223344455553

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=93.42  E-value=0.063  Score=56.85  Aligned_cols=39  Identities=23%  Similarity=0.238  Sum_probs=31.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP  641 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp  641 (741)
                      ...++++||+||||||+...|+..+...|.++.....++
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~  142 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT  142 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence            346889999999999999999999877676666655554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=93.40  E-value=0.065  Score=56.44  Aligned_cols=41  Identities=20%  Similarity=0.239  Sum_probs=33.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc-CCCCeEEEEeCCCc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV-LGYPARTYTLNPKA  643 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~-~~~~~~~~~inpka  643 (741)
                      ...++++||+|+||||++..|+..+.. .|.++.+...+|..
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r  146 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR  146 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence            457899999999999999999999874 67777777777643

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=93.40  E-value=0.038  Score=58.60  Aligned_cols=28  Identities=25%  Similarity=0.508  Sum_probs=24.5

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +.....+.|+||+||||||+++.|+..+
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3446679999999999999999999987

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=93.39  E-value=0.038  Score=54.53  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=22.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ....+.|+||+||||||+++.++...
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999999854

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=93.38  E-value=0.029  Score=57.34  Aligned_cols=25  Identities=20%  Similarity=0.322  Sum_probs=22.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..++|+|+|||||||+.+.|++.+.
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4689999999999999999998764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=93.36  E-value=0.061  Score=57.62  Aligned_cols=42  Identities=29%  Similarity=0.333  Sum_probs=33.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV  644 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~  644 (741)
                      ...+.|+||||+||||+++.|...+...+..+.+.-.+|...
T Consensus        55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~   96 (337)
T 2qm8_A           55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST   96 (337)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCccc
Confidence            446789999999999999999988766566666666666543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.33  E-value=0.043  Score=52.51  Aligned_cols=24  Identities=38%  Similarity=0.444  Sum_probs=21.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -.+|+||+||||||+++++..++.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            568999999999999999998864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=93.25  E-value=0.081  Score=58.51  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=26.2

Q ss_pred             HHHHhhccce-EEEEecCCCChhHHHHHHHHHhccC
Q psy17620        596 MYETMLTRHS-TMIVGPTGGGKSVVINALVKTSTVL  630 (741)
Q Consensus       596 L~e~l~~r~g-v~lvGp~gsGKTt~~~~L~~a~~~~  630 (741)
                      |.+.+....+ +.|+||+||||||+++++...+...
T Consensus       159 L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~  194 (418)
T 1p9r_A          159 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSS  194 (418)
T ss_dssp             HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred             HHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence            3344333444 6899999999999999999987643

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=93.23  E-value=0.043  Score=61.16  Aligned_cols=26  Identities=23%  Similarity=0.502  Sum_probs=23.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .++++++||||+|||++.+.+++.++
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            36899999999999999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=93.22  E-value=0.043  Score=55.09  Aligned_cols=25  Identities=28%  Similarity=0.496  Sum_probs=22.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|.|++||||||+.+.|++.++
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999999874

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.21  E-value=0.034  Score=56.02  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=21.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++..+.
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3577999999999999999987653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=93.21  E-value=0.046  Score=62.08  Aligned_cols=32  Identities=25%  Similarity=0.465  Sum_probs=26.5

Q ss_pred             HHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        597 YETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       597 ~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+..+..+.|+||+||||||++++|...+.
T Consensus       254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          254 WLAIEHKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             HHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             HHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            34455677899999999999999999987764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=93.17  E-value=0.049  Score=55.48  Aligned_cols=27  Identities=30%  Similarity=0.411  Sum_probs=22.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...-|.|.|||||||||+.+.|++.++
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345688999999999999999998764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=93.17  E-value=0.083  Score=59.39  Aligned_cols=25  Identities=28%  Similarity=0.626  Sum_probs=23.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..||+|+||||+|||++.+.+++..
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999999876

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=93.16  E-value=0.065  Score=54.40  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=22.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-|+|.|||||||||+.+.|++.++
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~~g   54 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKSHC   54 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34689999999999999999998763

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=93.14  E-value=0.059  Score=55.41  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=23.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...|.|+|++||||||+.+.|++.++
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56899999999999999999999874

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=93.13  E-value=0.05  Score=60.63  Aligned_cols=26  Identities=31%  Similarity=0.608  Sum_probs=23.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .++++|+||||+|||++.+.|++.+.
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~   75 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999999873

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=93.06  E-value=0.059  Score=58.31  Aligned_cols=31  Identities=23%  Similarity=0.467  Sum_probs=26.4

Q ss_pred             HhhccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        599 TMLTRHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       599 ~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      .+..+..+.|+||+||||||+++.|...+..
T Consensus       171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          171 AVQLERVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             HHHTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             HHhcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            4556778999999999999999999887643

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.04  E-value=0.12  Score=58.57  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS  645 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t  645 (741)
                      .++++|+||||+|||++.+.+++.++     ..+..+|+....
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~-----~~~i~in~s~~~  114 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQNASDVR  114 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEECTTSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEeCCCcc
Confidence            37999999999999999999999873     455566665543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=93.04  E-value=0.046  Score=58.02  Aligned_cols=28  Identities=18%  Similarity=0.106  Sum_probs=24.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVL  630 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~  630 (741)
                      ...|.|+||+||||||+.+.|+..+...
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~gll~~~  117 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQALLARW  117 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred             CEEEEEECCCCchHHHHHHHHHhhcccc
Confidence            3457899999999999999999988654

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.03  E-value=0.047  Score=55.31  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|-|.||+||||||+.+.|+..++
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3477999999999999999999764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.00  E-value=0.042  Score=56.08  Aligned_cols=25  Identities=32%  Similarity=0.618  Sum_probs=21.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++..+.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999998754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=93.00  E-value=0.041  Score=53.98  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .-|.|+|++||||||+.+.|++.+
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            357899999999999999998865

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=92.99  E-value=0.033  Score=56.70  Aligned_cols=26  Identities=31%  Similarity=0.459  Sum_probs=22.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++++..+.
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34678999999999999999988764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=92.97  E-value=0.07  Score=52.42  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=25.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      ...++|+||+||||||+.+.++......+.++.+
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~   56 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY   56 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            4568899999999999999999765443444433

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=92.97  E-value=0.08  Score=56.99  Aligned_cols=42  Identities=29%  Similarity=0.334  Sum_probs=33.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV  644 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~  644 (741)
                      ..-|.|+|+||+||||++..|+.++...|.++-+...+|..-
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~  120 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST  120 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence            346889999999999999999999887788888888877654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=92.96  E-value=0.067  Score=57.99  Aligned_cols=32  Identities=31%  Similarity=0.435  Sum_probs=25.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      ...++|+||+||||||+++.|+..+...+..+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V  188 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV  188 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhhccccCCEE
Confidence            34688999999999999999999876544333

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=92.92  E-value=0.079  Score=56.27  Aligned_cols=25  Identities=28%  Similarity=0.493  Sum_probs=22.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..++|+||||||||++...|++.+.
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCccCHHHHHHHHHHhCC
Confidence            3588999999999999999998863

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=92.91  E-value=0.051  Score=52.56  Aligned_cols=24  Identities=21%  Similarity=0.533  Sum_probs=21.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .-|.|+|++|+||||+++.+....
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            367899999999999999998753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=92.88  E-value=0.069  Score=56.86  Aligned_cols=25  Identities=36%  Similarity=0.395  Sum_probs=22.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|+||||||||++...|++.+.
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCc
Confidence            4678999999999999999998764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=92.86  E-value=0.05  Score=53.75  Aligned_cols=23  Identities=39%  Similarity=0.546  Sum_probs=20.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      ..-|.|+|++||||||+.+.|++
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999987

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=92.85  E-value=0.081  Score=59.84  Aligned_cols=25  Identities=28%  Similarity=0.554  Sum_probs=23.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..||+|+||||||||++.+.++...
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999875

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=92.83  E-value=0.083  Score=55.70  Aligned_cols=25  Identities=24%  Similarity=0.190  Sum_probs=22.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..|.|+||+||||||+.+.|+..+.
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4578999999999999999999875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=92.80  E-value=0.054  Score=52.41  Aligned_cols=24  Identities=33%  Similarity=0.263  Sum_probs=21.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|.|+|++||||||+.+.|++.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            346889999999999999999985

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=92.66  E-value=0.054  Score=52.49  Aligned_cols=23  Identities=22%  Similarity=0.553  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      --|.|+|++|+||||+++.|...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            35889999999999999999875

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=92.60  E-value=0.092  Score=52.60  Aligned_cols=100  Identities=20%  Similarity=0.284  Sum_probs=58.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccc--cCC---CCCc---ccChHHHHHHHhc--
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVL--NPE---TRDW---YDGLLSNIFRAVN--  673 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~--d~~---t~eW---~DGvls~i~R~~~--  673 (741)
                      .-|.+.|++||||||..+.|++.+...|.+.....=.|......+..-.+  ++.   ..++   ...++-.+-|...  
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~~   83 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVE   83 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999988776323445567654433322211  111   1222   2333333333211  


Q ss_pred             CCCCCCCCCCeEEEEc----------C---CCChhhhhhcccc
Q psy17620        674 KPLDPGSKERKYILFD----------G---DVDALWIENMNSV  703 (741)
Q Consensus       674 ~~~~~~~~~~~WIVfD----------G---~vd~~wiE~LNsv  703 (741)
                      ......-..++|+|.|          |   .+|..|++.+|..
T Consensus        84 ~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~  126 (213)
T 4tmk_A           84 TVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDA  126 (213)
T ss_dssp             HTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHH
Confidence            0000001246899999          3   3678899998874

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=92.54  E-value=0.045  Score=55.78  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=22.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34578999999999999999998764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=92.54  E-value=0.046  Score=54.87  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=22.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+||||||++++|+..+.
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34578999999999999999988753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=92.53  E-value=0.082  Score=56.77  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|+||||||||++...|++.++
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHCC
Confidence            689999999999999999998764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=92.52  E-value=0.11  Score=55.60  Aligned_cols=42  Identities=19%  Similarity=0.264  Sum_probs=33.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV  644 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~  644 (741)
                      ...|.++|++|+||||+++.|+..+...+.++.+...+|...
T Consensus        56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~   97 (341)
T 2p67_A           56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP   97 (341)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcC
Confidence            346789999999999999999999877777777777777654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=92.50  E-value=0.046  Score=56.49  Aligned_cols=25  Identities=24%  Similarity=0.428  Sum_probs=21.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++..+.
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3577999999999999999987654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=92.47  E-value=0.047  Score=56.21  Aligned_cols=25  Identities=40%  Similarity=0.703  Sum_probs=21.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++..+.
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999988754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=92.45  E-value=0.047  Score=56.98  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=21.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++|+..+.
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4578999999999999999988653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=92.44  E-value=0.047  Score=55.88  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=22.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++++..+.
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34578999999999999999988754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=92.44  E-value=0.083  Score=55.64  Aligned_cols=34  Identities=21%  Similarity=0.450  Sum_probs=27.9

Q ss_pred             hHHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        592 DVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       592 Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .+.+|++.+. ...+.|+||+|+||||+++.|. ..
T Consensus       155 gi~~L~~~l~-G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          155 GIDELVDYLE-GFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             THHHHHHHTT-TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             CHHHHHhhcc-CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            3777777654 5678999999999999999998 54

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=92.42  E-value=0.048  Score=56.52  Aligned_cols=26  Identities=31%  Similarity=0.543  Sum_probs=22.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++++..+.
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            34577999999999999999998654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.41  E-value=0.048  Score=55.50  Aligned_cols=25  Identities=20%  Similarity=0.480  Sum_probs=21.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++|+..+.
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3577999999999999999998754

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=92.38  E-value=0.085  Score=59.51  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=27.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      ...++|+||+||||||+++.|+..+...+..+.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l  326 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML  326 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence            4468899999999999999999987655544443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=92.36  E-value=0.094  Score=58.24  Aligned_cols=40  Identities=23%  Similarity=0.266  Sum_probs=33.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK  642 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk  642 (741)
                      ...|+++||+|+||||+...|+..+...|.++.+...++.
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY  136 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence            4578899999999999999999999887877776666543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=92.36  E-value=0.066  Score=59.46  Aligned_cols=27  Identities=19%  Similarity=0.271  Sum_probs=24.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      .++++|+||||+|||++.+.+++.+..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~  156 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ  156 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999988744

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=92.35  E-value=0.058  Score=55.26  Aligned_cols=23  Identities=30%  Similarity=0.536  Sum_probs=20.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..+.|+||+||||||++++|+..
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35779999999999999999985

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=92.29  E-value=0.071  Score=51.76  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|.|.|++||||||+.+.|++.++
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            578999999999999999998764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=92.26  E-value=0.06  Score=55.78  Aligned_cols=24  Identities=33%  Similarity=0.554  Sum_probs=21.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ...+.|+||+||||||++++++..
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346789999999999999999986

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=92.24  E-value=0.073  Score=48.75  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=92.24  E-value=0.052  Score=54.84  Aligned_cols=26  Identities=19%  Similarity=0.372  Sum_probs=22.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++++..+.
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            34578999999999999999988754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=92.23  E-value=0.07  Score=49.31  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=92.21  E-value=0.052  Score=55.99  Aligned_cols=26  Identities=31%  Similarity=0.457  Sum_probs=22.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCC
Confidence            44688999999999999999988653

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=92.19  E-value=0.086  Score=53.40  Aligned_cols=40  Identities=18%  Similarity=0.178  Sum_probs=27.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccC----CCCeEEEEeCCCc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVL----GYPARTYTLNPKA  643 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~~~~inpka  643 (741)
                      ..-|++.|++||||||..+.|++.+...    |.++.. .=.|..
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~-~rep~~   68 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVV-TREPGG   68 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEE-EESSSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeee-ecCCCC
Confidence            3457889999999999999999998766    766643 335643

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=92.16  E-value=0.063  Score=58.18  Aligned_cols=25  Identities=24%  Similarity=0.490  Sum_probs=21.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++....
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCC
Confidence            3577999999999999999998754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=92.16  E-value=0.08  Score=57.74  Aligned_cols=27  Identities=22%  Similarity=0.398  Sum_probs=23.9

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..+..+.|+||+||||||+.+.|++..
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            446689999999999999999999875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=92.12  E-value=0.054  Score=56.07  Aligned_cols=26  Identities=27%  Similarity=0.555  Sum_probs=22.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            34578999999999999999987753

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=92.11  E-value=0.15  Score=57.74  Aligned_cols=45  Identities=24%  Similarity=0.364  Sum_probs=34.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc--CCCCeEEEEeCCCccccc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV--LGYPARTYTLNPKAVSVI  647 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~--~~~~~~~~~inpka~t~~  647 (741)
                      ...++|.|+||||||++++++...+-.  ....++++.++||.....
T Consensus       167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~  213 (512)
T 2ius_A          167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELS  213 (512)
T ss_dssp             SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhh
Confidence            356889999999999999999875422  224578999999985443

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=92.10  E-value=0.08  Score=52.10  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      -|.|+|++||||||+.+.|++.+
T Consensus        14 iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            57799999999999999999875

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=92.10  E-value=0.12  Score=54.98  Aligned_cols=40  Identities=23%  Similarity=0.323  Sum_probs=33.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK  642 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk  642 (741)
                      ...++++||+|+||||+...|+..+...|.++.+...++.
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~  144 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF  144 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            4578899999999999999999998877777777766664

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=92.10  E-value=0.074  Score=48.85  Aligned_cols=22  Identities=41%  Similarity=0.578  Sum_probs=19.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+++|++|+||||+++.|...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999865

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=92.06  E-value=0.056  Score=56.17  Aligned_cols=26  Identities=38%  Similarity=0.533  Sum_probs=22.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34578999999999999999988754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=92.04  E-value=0.076  Score=48.80  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.01  E-value=0.057  Score=55.66  Aligned_cols=26  Identities=19%  Similarity=0.413  Sum_probs=22.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34578999999999999999988753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=91.98  E-value=0.07  Score=55.38  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|+|||||||+.+.|++.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999985

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=91.96  E-value=0.073  Score=49.89  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|.|+|++|+||||+++.|...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            45889999999999999999753

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=91.91  E-value=0.13  Score=57.34  Aligned_cols=40  Identities=20%  Similarity=0.296  Sum_probs=33.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK  642 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk  642 (741)
                      ...|+++|++|+||||+...|+..+...|.++-....+|.
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~  139 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW  139 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            3578899999999999999999999887877776666654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=91.87  E-value=0.078  Score=55.66  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=23.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      .-|.|+||+||||||+.+.|++.+..
T Consensus        32 ~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           32 LFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            35779999999999999999998864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=91.85  E-value=0.061  Score=55.20  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=21.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++|+..+.
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3578999999999999999988753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=91.84  E-value=0.086  Score=48.77  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=20.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            35899999999999999999754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=91.83  E-value=0.061  Score=56.15  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++|+..+.
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3578999999999999999988754

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=91.81  E-value=0.11  Score=52.10  Aligned_cols=48  Identities=17%  Similarity=0.260  Sum_probs=30.1

Q ss_pred             HHHHhhccceEEEEecCCCChhHHHHHHHHH-hccCC--CCeEEEEeCCCc
Q psy17620        596 MYETMLTRHSTMIVGPTGGGKSVVINALVKT-STVLG--YPARTYTLNPKA  643 (741)
Q Consensus       596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a-~~~~~--~~~~~~~inpka  643 (741)
                      ....+.....++++||||||||+++....-. ....+  ....+..+.|.-
T Consensus        69 ~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~  119 (235)
T 3llm_A           69 ILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRR  119 (235)
T ss_dssp             HHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSH
T ss_pred             HHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccch
Confidence            4445556788999999999999877655432 11111  234555666653

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=91.80  E-value=0.44  Score=48.03  Aligned_cols=99  Identities=18%  Similarity=0.123  Sum_probs=49.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc--ccccc---cccccCCCCCcccChHHHHHHHhcCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIEL---YGVLNPETRDWYDGLLSNIFRAVNKPLD  677 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~--t~~eL---yG~~d~~t~eW~DGvls~i~R~~~~~~~  677 (741)
                      ..-+++.||+|+||||..--++..+..-|.++.  .+.|.--  ...++   .|---+. ....  -...++..+.....
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVl--i~~~~~d~r~~~~i~srlG~~~~~-~~~~--~~~~i~~~i~~~~~   86 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYL--VFKPKIDTRSIRNIQSRTGTSLPS-VEVE--SAPEILNYIMSNSF   86 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE--EEEECCCGGGCSSCCCCCCCSSCC-EEES--STHHHHHHHHSTTS
T ss_pred             cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE--EEEeccCchHHHHHHHhcCCCccc-cccC--CHHHHHHHHHHHhh
Confidence            345667899999999976555554443344443  3322211  11111   1210000 0010  11234433322211


Q ss_pred             CCCCCCeEEEEc--CCCChhhhhhccccccCCc
Q psy17620        678 PGSKERKYILFD--GDVDALWIENMNSVMDDNK  708 (741)
Q Consensus       678 ~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk  708 (741)
                        .....-|++|  ..++...+|.+..+.|.+.
T Consensus        87 --~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi  117 (223)
T 2b8t_A           87 --NDETKVIGIDEVQFFDDRICEVANILAENGF  117 (223)
T ss_dssp             --CTTCCEEEECSGGGSCTHHHHHHHHHHHTTC
T ss_pred             --CCCCCEEEEecCccCcHHHHHHHHHHHhCCC
Confidence              2245799999  4477778888877666553

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=91.80  E-value=0.082  Score=53.75  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|.|.|++||||||+.+.|++.++
T Consensus        24 iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           24 LIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            588999999999999999999765

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=91.79  E-value=0.078  Score=56.64  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=22.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..|+|+|||||||||+.+.|++.++
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3689999999999999999999864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=91.78  E-value=0.12  Score=55.11  Aligned_cols=25  Identities=24%  Similarity=0.149  Sum_probs=22.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      -|.|.||+||||||+.+.|+..+..
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~~  118 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLSR  118 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            5789999999999999999998764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=91.76  E-value=0.056  Score=55.56  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++++..+.
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34577999999999999999988754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=91.72  E-value=0.073  Score=57.60  Aligned_cols=26  Identities=19%  Similarity=0.496  Sum_probs=22.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++++....
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            34578999999999999999998754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=91.71  E-value=0.064  Score=55.46  Aligned_cols=26  Identities=23%  Similarity=0.431  Sum_probs=22.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++++..+.
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            34577999999999999999988753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=91.71  E-value=0.087  Score=48.44  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.70  E-value=0.087  Score=48.64  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=91.69  E-value=0.067  Score=51.13  Aligned_cols=22  Identities=45%  Similarity=0.751  Sum_probs=19.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      .-|+|+|++|+||||+++.+..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999876

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=91.66  E-value=0.068  Score=57.65  Aligned_cols=26  Identities=31%  Similarity=0.480  Sum_probs=23.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+||||||+++.|++.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999999864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=91.63  E-value=0.078  Score=55.57  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=21.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      .-|.|.||+||||||+.+.|++.++..+..
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~   35 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQIFRREGVK   35 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence            457899999999999999999987654433

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=91.63  E-value=0.075  Score=58.04  Aligned_cols=25  Identities=32%  Similarity=0.578  Sum_probs=21.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++....
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCC
Confidence            3577999999999999999998764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=91.62  E-value=0.076  Score=57.56  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=21.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++....
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCCC
Confidence            3577999999999999999998754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=91.62  E-value=0.089  Score=48.66  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      --|+++|++|+||||+++.|...
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            36899999999999999999865

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=91.62  E-value=0.088  Score=49.23  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=91.60  E-value=0.088  Score=50.29  Aligned_cols=24  Identities=29%  Similarity=0.583  Sum_probs=21.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.|...
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            347899999999999999999865

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=91.58  E-value=0.077  Score=57.58  Aligned_cols=25  Identities=24%  Similarity=0.518  Sum_probs=21.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++....
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCC
Confidence            3577999999999999999998754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=91.57  E-value=0.092  Score=48.65  Aligned_cols=23  Identities=13%  Similarity=0.280  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      --|+++|++|+||||+++.|...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999998854

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=91.54  E-value=0.093  Score=48.39  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999864

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=91.51  E-value=0.41  Score=50.10  Aligned_cols=67  Identities=13%  Similarity=0.127  Sum_probs=37.1

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK  642 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk  642 (741)
                      +++++.+....++......-+-.++..+..+++.+|||||||.++-..+...-..+....+.++-|.
T Consensus        17 ~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~   83 (367)
T 1hv8_A           17 ILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPT   83 (367)
T ss_dssp             HHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSC
T ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCC
Confidence            4566666666554432211122333444789999999999998865544332211223345555564

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=91.51  E-value=0.095  Score=54.45  Aligned_cols=25  Identities=28%  Similarity=0.547  Sum_probs=22.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +.+++++||||+|||.+.++|+...
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhh
Confidence            4589999999999999999998864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=91.44  E-value=0.095  Score=49.08  Aligned_cols=24  Identities=25%  Similarity=0.476  Sum_probs=20.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.|...
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999998764

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=91.42  E-value=0.13  Score=55.87  Aligned_cols=39  Identities=23%  Similarity=0.359  Sum_probs=28.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK  642 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk  642 (741)
                      .+..++++||||||||++++.+.......|..  +.+++|+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~--~~~~D~~   72 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSR--VIIIDPE   72 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCC--EEEEESS
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCE--EEEEeCC
Confidence            34568899999999999999998776544433  3334444

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=91.41  E-value=0.082  Score=57.56  Aligned_cols=25  Identities=20%  Similarity=0.517  Sum_probs=21.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++....
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCC
Confidence            3577999999999999999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=91.41  E-value=0.072  Score=59.02  Aligned_cols=21  Identities=43%  Similarity=0.664  Sum_probs=19.7

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ++|+||+|+||||++++|.+.
T Consensus        45 vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            789999999999999999875

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=91.38  E-value=0.12  Score=52.10  Aligned_cols=44  Identities=20%  Similarity=0.199  Sum_probs=34.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhcc-CCCCeEEEEeCCCcccccc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTV-LGYPARTYTLNPKAVSVIE  648 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~-~~~~~~~~~inpka~t~~e  648 (741)
                      -|.+.|++||||||+.+.|++.+.. .|.++....-.|..-...+
T Consensus        23 ~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~   67 (223)
T 3ld9_A           23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNE   67 (223)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHH
Confidence            4667899999999999999999987 7777666455676544433

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=91.37  E-value=0.1  Score=48.81  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998865

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=91.36  E-value=0.083  Score=57.51  Aligned_cols=25  Identities=20%  Similarity=0.496  Sum_probs=21.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++....
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC
Confidence            3577999999999999999998754

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=91.35  E-value=0.16  Score=50.00  Aligned_cols=39  Identities=23%  Similarity=0.212  Sum_probs=31.0

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS  645 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t  645 (741)
                      |.+.|+-||||||.++.|++.+...|.++... =.|....
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t-reP~~t~   41 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK-REPGGTE   41 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-ESSCSSH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE-ECCCCCc
Confidence            56889999999999999999998888776543 3565433

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=91.34  E-value=0.094  Score=48.51  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      .-|+++|++|+||||+++.|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4689999999999999999875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=91.33  E-value=0.09  Score=58.85  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=23.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...-++|+||+||||||++|+|+....
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence            345699999999999999999998753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=91.33  E-value=0.094  Score=48.50  Aligned_cols=21  Identities=24%  Similarity=0.446  Sum_probs=18.6

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      -|+++|++|+||||+++.|..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            589999999999999998853

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=91.30  E-value=0.18  Score=50.98  Aligned_cols=39  Identities=18%  Similarity=0.283  Sum_probs=33.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV  644 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~  644 (741)
                      .++++|.+|+||||+...|+.++. .|.++-+...+|..-
T Consensus        16 i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~   54 (262)
T 1yrb_A           16 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVK   54 (262)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCS
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcc
Confidence            578999999999999999999998 788888888888643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=91.30  E-value=0.13  Score=54.10  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=27.0

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +.++++.+ ....+.++||+|+||||+++.|+...
T Consensus       160 v~~lf~~l-~geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          160 IEELKEYL-KGKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             HHHHHHHH-SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             HHHHHHHh-cCCeEEEECCCCCcHHHHHHHhcccc
Confidence            66666554 35678899999999999999987653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=91.29  E-value=0.094  Score=49.76  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|++|+||||+++.|...
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999763

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=91.28  E-value=0.099  Score=49.55  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|.|+|++|+||||+++.|...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=91.28  E-value=0.096  Score=48.80  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=20.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            46899999999999999998753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=91.27  E-value=0.045  Score=58.04  Aligned_cols=26  Identities=31%  Similarity=0.621  Sum_probs=22.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|+..+.
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCchHHHHHHHHHcCCC
Confidence            44688999999999999999988654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=91.26  E-value=0.076  Score=54.95  Aligned_cols=25  Identities=28%  Similarity=0.606  Sum_probs=21.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ...+.|+||+||||||++++++..+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            3457899999999999999998765

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=91.26  E-value=0.15  Score=52.89  Aligned_cols=36  Identities=17%  Similarity=0.123  Sum_probs=27.5

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhccC-CCCeEE
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPART  636 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~  636 (741)
                      ....-+.|+||||+||||+.+.++..+..- |.++.+
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~   69 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL   69 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence            345578999999999999999999887543 444433

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=91.24  E-value=0.09  Score=57.60  Aligned_cols=26  Identities=27%  Similarity=0.511  Sum_probs=22.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+||||||++++++....
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCCC
Confidence            44678999999999999999997653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=91.20  E-value=0.11  Score=48.06  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=91.16  E-value=0.16  Score=53.13  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=28.1

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +.+|.+.+.....++|+||+|+|||++++.+++..
T Consensus        21 l~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~   55 (350)
T 2qen_A           21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER   55 (350)
T ss_dssp             HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence            44555555556889999999999999999988764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=91.10  E-value=0.12  Score=48.58  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=20.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      -.+|+||.|||||+++.++.-++
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999998876

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=91.09  E-value=0.086  Score=48.94  Aligned_cols=26  Identities=23%  Similarity=0.408  Sum_probs=21.8

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHH
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ....-|+++|++|+||||+++.|...
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34457999999999999999999753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=91.08  E-value=0.1  Score=48.36  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=18.7

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      -|+++|++|+||||+++.|..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999863

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=91.08  E-value=0.11  Score=48.38  Aligned_cols=24  Identities=17%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +.-|+++|++|+||||+++.|...
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999998753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=91.04  E-value=0.077  Score=55.73  Aligned_cols=25  Identities=20%  Similarity=0.400  Sum_probs=21.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-+.|+||+||||||++++|+..+.
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3578999999999999999988754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=91.01  E-value=0.11  Score=49.12  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|++|+||||+++.|...
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999864

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=91.01  E-value=0.062  Score=52.22  Aligned_cols=24  Identities=25%  Similarity=0.399  Sum_probs=20.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|.|+|++|+||||+++.|...
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            345899999999999999988654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=90.96  E-value=0.11  Score=55.89  Aligned_cols=25  Identities=32%  Similarity=0.445  Sum_probs=22.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|+|||||||||+.+.|++.++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3688999999999999999999874

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=90.88  E-value=0.12  Score=48.89  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=20.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +.-|+++|++|+||||+++.|...
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=90.87  E-value=0.11  Score=49.23  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      --|+++|++|+||||+++.|...
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999875

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=90.86  E-value=0.19  Score=52.90  Aligned_cols=40  Identities=20%  Similarity=0.207  Sum_probs=33.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK  642 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk  642 (741)
                      ...++++|++|+||||+...|+..+...|.++.+...+|.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY  137 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4467899999999999999999998877777777766654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=90.84  E-value=0.23  Score=48.68  Aligned_cols=26  Identities=23%  Similarity=0.446  Sum_probs=22.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-|+++|++|+||||+++.|...+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34788999999999999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=90.83  E-value=0.11  Score=49.45  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+|+|++|+||||+++.|...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999998754

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=90.79  E-value=0.1  Score=54.90  Aligned_cols=24  Identities=46%  Similarity=0.671  Sum_probs=20.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-.|+|+||+|+||||+++.|...
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            346799999999999999998753

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=90.79  E-value=0.12  Score=47.61  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=19.3

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|++|+|||++++.|...
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=90.78  E-value=0.07  Score=57.59  Aligned_cols=25  Identities=28%  Similarity=0.569  Sum_probs=21.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++....
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCccHHHHHHHHHcCCC
Confidence            4577999999999999999998754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=90.78  E-value=0.12  Score=51.79  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=21.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|.|+|++||||||+.+.|++.++
T Consensus        18 ~i~i~G~~gsGKst~~~~l~~~lg   41 (236)
T 1q3t_A           18 QIAIDGPASSGKSTVAKIIAKDFG   41 (236)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            588999999999999999998763

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.77  E-value=0.12  Score=50.61  Aligned_cols=25  Identities=32%  Similarity=0.589  Sum_probs=21.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..-|+++|++|+||||+++.|....
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=90.74  E-value=0.12  Score=48.15  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999865

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=90.73  E-value=0.1  Score=56.60  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=21.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++..+.
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCCC
Confidence            3577999999999999999998653

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=90.68  E-value=0.22  Score=52.21  Aligned_cols=41  Identities=20%  Similarity=0.199  Sum_probs=33.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      ...++++|++|+||||+...|+..+...+.++.+...++..
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence            45788999999999999999999988777777776666654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=90.63  E-value=0.11  Score=48.44  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=19.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      .-|+++|++|+||||+++.|..
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999864

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=90.62  E-value=2  Score=44.99  Aligned_cols=76  Identities=17%  Similarity=0.210  Sum_probs=55.9

Q ss_pred             CcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHHhhccee-ee
Q psy17620        422 GAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRP-VV  500 (741)
Q Consensus       422 GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRp-va  500 (741)
                      |..+++||+++++.+++..+-       ..+..+...+.-.|........+.+..|+||..   ..+++.|...|.. +.
T Consensus       145 ~~vl~iDEi~~l~~~~~~~Ll-------~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~---~~l~~~L~~R~~~~~~  214 (350)
T 1g8p_A          145 RGYLYIDECNLLEDHIVDLLL-------DVAQSGENVVERDGLSIRHPARFVLVGSGNPEE---GDLRPQLLDRFGLSVE  214 (350)
T ss_dssp             TEEEEETTGGGSCHHHHHHHH-------HHHHHSEEEECCTTCCEEEECCEEEEEEECSCS---CCCCHHHHTTCSEEEE
T ss_pred             CCEEEEeChhhCCHHHHHHHH-------HHHhcCceEEEecceEEeeCCceEEEEEeCCCC---CCCCHHHHhhcceEEE
Confidence            678999999999998766543       333334334555677777778899999999842   3688999999965 77


Q ss_pred             ccCC-CHH
Q psy17620        501 CIVP-DFE  507 (741)
Q Consensus       501 m~~P-D~~  507 (741)
                      +..| |.+
T Consensus       215 l~~~~~~~  222 (350)
T 1g8p_A          215 VLSPRDVE  222 (350)
T ss_dssp             CCCCCSHH
T ss_pred             cCCCCcHH
Confidence            7777 543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=90.62  E-value=0.13  Score=48.54  Aligned_cols=24  Identities=21%  Similarity=0.562  Sum_probs=20.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.|...
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999998764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=90.61  E-value=0.12  Score=57.35  Aligned_cols=39  Identities=18%  Similarity=0.274  Sum_probs=31.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK  642 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk  642 (741)
                      ..|+++|++|+||||+...|+..+...|.++.+...+|.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~  138 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY  138 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence            368899999999999999999988766666666655553

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=90.60  E-value=0.12  Score=48.78  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=19.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+++|++|+||||+++.|...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999998754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=90.56  E-value=0.12  Score=50.45  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      ....+.|+||||+||||+.+.++.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999988

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=90.54  E-value=0.12  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=20.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.|...
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456899999999999999998753

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.50  E-value=0.13  Score=48.16  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.|...
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            346899999999999999998764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=90.49  E-value=0.13  Score=48.15  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999998764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=90.47  E-value=0.13  Score=48.28  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.|...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            356999999999999999998864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=90.44  E-value=0.13  Score=49.15  Aligned_cols=23  Identities=17%  Similarity=0.546  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|++|+||||+++.|...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999998864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=90.44  E-value=0.15  Score=56.24  Aligned_cols=26  Identities=35%  Similarity=0.472  Sum_probs=21.7

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .+--+.|+||+|+||||++++|....
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            34456799999999999999999854

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=90.42  E-value=0.13  Score=48.16  Aligned_cols=23  Identities=13%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999998754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=90.40  E-value=0.13  Score=48.71  Aligned_cols=23  Identities=35%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|++|+||||+++.|...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998765

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=90.38  E-value=0.14  Score=48.64  Aligned_cols=24  Identities=21%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.|...
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999998864

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=90.35  E-value=0.23  Score=57.83  Aligned_cols=35  Identities=20%  Similarity=0.417  Sum_probs=24.4

Q ss_pred             HHHhhccceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        597 YETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       597 ~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      ..++..+.-.+|.||||||||+.+-.+...+-..|
T Consensus       199 ~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~  233 (646)
T 4b3f_X          199 LFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG  233 (646)
T ss_dssp             HHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            34455667789999999999987666555443333

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=90.35  E-value=0.13  Score=51.07  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=21.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ....+.|+||||+||||+.+.++..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3557899999999999999999884

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=90.31  E-value=0.14  Score=48.75  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      --|+++|++|+||||+++.|...
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=90.25  E-value=0.13  Score=51.29  Aligned_cols=26  Identities=31%  Similarity=0.387  Sum_probs=22.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+|+|+||||+|||++...|++...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            45789999999999999999887653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=90.19  E-value=0.14  Score=53.18  Aligned_cols=21  Identities=33%  Similarity=0.419  Sum_probs=19.4

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      -|.|+|++||||||+.+.|++
T Consensus        77 iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           77 VLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999984

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=90.18  E-value=0.65  Score=45.51  Aligned_cols=44  Identities=14%  Similarity=0.246  Sum_probs=27.4

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHH
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVI  620 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~  620 (741)
                      +++++.+....++..-. .+....+...+.+++++|||||||.++
T Consensus        25 l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~lv~~pTGsGKT~~~   68 (224)
T 1qde_A           25 LLRGVFGYGFEEPSAIQ-QRAIMPIIEGHDVLAQAQSGTGKTGTF   68 (224)
T ss_dssp             HHHHHHHHTCCSCCHHH-HHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred             HHHHHHHCCCCCCcHHH-HHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence            45666665554443221 122333445677999999999999874

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=90.13  E-value=0.14  Score=49.11  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|++|+||||+++.|...
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=90.13  E-value=0.1  Score=57.46  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..-|+|+|+|||||||+.+.|++.+
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhc
Confidence            3568899999999999999998765

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=90.09  E-value=0.071  Score=57.64  Aligned_cols=25  Identities=24%  Similarity=0.501  Sum_probs=21.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++....
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3577999999999999999998654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=90.09  E-value=0.13  Score=55.74  Aligned_cols=26  Identities=35%  Similarity=0.539  Sum_probs=22.7

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ....+.|+||+|+||||+++.|....
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccc
Confidence            45679999999999999999998654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.09  E-value=0.15  Score=48.63  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.|...
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            346899999999999999999864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=90.05  E-value=0.23  Score=49.26  Aligned_cols=33  Identities=21%  Similarity=0.468  Sum_probs=22.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      ....++|+||||+|||++...++......+.++
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v   54 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPG   54 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            455789999999999999666554433333333

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=90.05  E-value=0.15  Score=48.07  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999998854

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=90.04  E-value=0.16  Score=48.93  Aligned_cols=24  Identities=17%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.+...
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            447899999999999999998863

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=90.03  E-value=0.35  Score=51.03  Aligned_cols=107  Identities=13%  Similarity=0.116  Sum_probs=57.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCC-CCeEEEEeCCCccccccccccccCCCCCcccCh--HHHHHHHhcCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLG-YPARTYTLNPKAVSVIELYGVLNPETRDWYDGL--LSNIFRAVNKPLDPG  679 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~-~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGv--ls~i~R~~~~~~~~~  679 (741)
                      .|..+++||+|+|||++.+.+++...... ....+..++|..              .  .-|+  +..++..+....  .
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------~--~~~id~ir~li~~~~~~p--~   79 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------E--NIGIDDIRTIKDFLNYSP--E   79 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------S--CBCHHHHHHHHHHHTSCC--S
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------C--CCCHHHHHHHHHHHhhcc--c
Confidence            46889999999999999999998643221 122344455431              0  1121  334444443221  1


Q ss_pred             CCCCeEEEEcCCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCCCCCCC
Q psy17620        680 SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDSH  738 (741)
Q Consensus       680 ~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L~~aSP  738 (741)
                      ....+.+|+|. +|..=.+..|.+|.     +|-     ..|+++.+||-+++....-|
T Consensus        80 ~~~~kvviIde-ad~lt~~a~naLLk-----~LE-----ep~~~t~fIl~t~~~~kl~~  127 (305)
T 2gno_A           80 LYTRKYVIVHD-CERMTQQAANAFLK-----ALE-----EPPEYAVIVLNTRRWHYLLP  127 (305)
T ss_dssp             SSSSEEEEETT-GGGBCHHHHHHTHH-----HHH-----SCCTTEEEEEEESCGGGSCH
T ss_pred             cCCceEEEecc-HHHhCHHHHHHHHH-----HHh-----CCCCCeEEEEEECChHhChH
Confidence            23579999994 33333334454431     111     12456677776665544433

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=90.03  E-value=0.16  Score=50.05  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=22.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..|.|.|++||||||+.+.|++.++
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g   28 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELS   28 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4688999999999999999998753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=90.01  E-value=0.16  Score=54.95  Aligned_cols=26  Identities=31%  Similarity=0.570  Sum_probs=22.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +..++|+|++||||||+.+.|++.+.
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            34599999999999999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=89.95  E-value=0.16  Score=47.83  Aligned_cols=23  Identities=17%  Similarity=0.325  Sum_probs=20.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      --|+++|++|+||||+++.|...
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=89.87  E-value=0.16  Score=48.22  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=21.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|+|++|+||||+++.+.....
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4689999999999999988876543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=89.81  E-value=0.16  Score=48.41  Aligned_cols=23  Identities=13%  Similarity=0.317  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      --|+|+|++|+||||+++.|...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999998764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=89.80  E-value=0.2  Score=53.84  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=22.1

Q ss_pred             cceEEE--EecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMI--VGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~l--vGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...++|  +||+|+|||++++.+++.+.
T Consensus        50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~   77 (412)
T 1w5s_A           50 DVNMIYGSIGRVGIGKTTLAKFTVKRVS   77 (412)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence            346777  89999999999999988764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=89.77  E-value=0.17  Score=48.55  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=21.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .--|+|+|++|+||||+++.|...
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            446899999999999999999764

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=89.77  E-value=0.75  Score=44.33  Aligned_cols=46  Identities=17%  Similarity=0.135  Sum_probs=29.4

Q ss_pred             HHHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHH
Q psy17620        575 VLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVIN  621 (741)
Q Consensus       575 ~l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~  621 (741)
                      -+++++.+....++..-. .+..+.+...+.+++++|||||||.++-
T Consensus        13 ~l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~lv~apTGsGKT~~~~   58 (206)
T 1vec_A           13 ELLMGIFEMGWEKPSPIQ-EESIPIALSGRDILARAKNGTGKSGAYL   58 (206)
T ss_dssp             HHHHHHHTTTCCSCCHHH-HHHHHHHHTTCCEEEECCSSSTTHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHH-HHHHHHHccCCCEEEECCCCCchHHHHH
Confidence            356677766654443221 1233444556789999999999997654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=89.75  E-value=0.17  Score=47.57  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999998853

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.75  E-value=0.12  Score=48.61  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=19.6

Q ss_pred             cceEEEEecCCCChhHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALV  624 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~  624 (741)
                      ..-|+++|++|+||||+++.|.
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            4579999999999999998876

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=89.73  E-value=0.15  Score=53.95  Aligned_cols=24  Identities=21%  Similarity=0.498  Sum_probs=21.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .-++|+|++||||||+++.|.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            357899999999999999998764

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=89.70  E-value=0.28  Score=54.31  Aligned_cols=41  Identities=20%  Similarity=0.199  Sum_probs=33.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      ...++++|++|+||||+...|+..+...|.++.....++..
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            45688999999999999999999998777777776666544

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=89.65  E-value=0.17  Score=48.89  Aligned_cols=23  Identities=22%  Similarity=0.470  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|++|+||||+++.|...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=89.61  E-value=0.17  Score=48.24  Aligned_cols=23  Identities=13%  Similarity=0.343  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|++|+||||+++.|...
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=89.60  E-value=0.15  Score=50.99  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|++|+||||+++.|...
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHcCC
Confidence            46899999999999999998864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=89.59  E-value=0.17  Score=48.76  Aligned_cols=24  Identities=29%  Similarity=0.522  Sum_probs=20.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+|+|++|+||||+++.|...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            346899999999999999998765

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=89.58  E-value=0.32  Score=49.25  Aligned_cols=40  Identities=13%  Similarity=0.137  Sum_probs=34.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK  642 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk  642 (741)
                      +..|++.|++|+||||+.-.++..+...|..+.+..++|.
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q   45 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETH   45 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            5579999999999999988888887777888888888883

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=89.58  E-value=0.17  Score=47.41  Aligned_cols=24  Identities=17%  Similarity=0.216  Sum_probs=20.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .--|+++|++|+||||+++.+...
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.54  E-value=0.18  Score=48.21  Aligned_cols=23  Identities=17%  Similarity=0.358  Sum_probs=20.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      -|+|+|++|+||||+++.|....
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            58999999999999999998753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=89.54  E-value=0.17  Score=48.13  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            36899999999999999998864

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=89.54  E-value=0.29  Score=55.35  Aligned_cols=38  Identities=21%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP  641 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp  641 (741)
                      ..|+++|++|+||||+...|+..+...|.++-+...+|
T Consensus       102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~  139 (504)
T 2j37_W          102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT  139 (504)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence            46889999999999999999999887777777666655

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=89.52  E-value=0.23  Score=56.43  Aligned_cols=31  Identities=23%  Similarity=0.399  Sum_probs=25.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      ...|+++|.|||||||+.+.|++.++..+..
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d   65 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVP   65 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence            3468999999999999999999988654433

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=89.48  E-value=0.12  Score=57.21  Aligned_cols=23  Identities=48%  Similarity=0.703  Sum_probs=20.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .|+|+||+|+||||+++.|....
T Consensus        33 ~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46999999999999999998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=89.44  E-value=0.18  Score=47.91  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=21.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+|+|++|+||||+++.|...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            347899999999999999999765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=89.43  E-value=0.18  Score=48.26  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=20.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +.-|+|+|++|+||||+++.+...
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999887764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=89.42  E-value=0.17  Score=48.21  Aligned_cols=24  Identities=17%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.|...
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999988643

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=89.39  E-value=0.18  Score=48.16  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+|+|++|+||||+++.|...
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999999764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=89.39  E-value=0.19  Score=48.61  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=21.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+|+|++|+||||+++.|...
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhC
Confidence            346899999999999999999865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=89.32  E-value=0.1  Score=52.36  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-+.|+|+.||||||+.+.|++.
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35789999999999999998876

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=89.27  E-value=0.47  Score=52.03  Aligned_cols=25  Identities=32%  Similarity=0.303  Sum_probs=20.7

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ...-+.|+|||||||||+.+.++-.
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Confidence            3556889999999999999977643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=89.21  E-value=0.19  Score=48.11  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=19.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+|+|++|+||||+++.|...
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999998764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=89.20  E-value=0.14  Score=47.95  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+|||++++.|...
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999998864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.19  E-value=0.19  Score=48.28  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .--|+|+|++|+||||+++.|...
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999998864

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=89.16  E-value=0.31  Score=54.01  Aligned_cols=40  Identities=15%  Similarity=0.125  Sum_probs=35.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccC-CCCeEEEEeCCCc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKA  643 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~~~inpka  643 (741)
                      ..|+++|++|+||||+.-.|+.++... |.++-....+|..
T Consensus       101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r  141 (433)
T 2xxa_A          101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR  141 (433)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            478899999999999999999999887 8888888888754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=89.11  E-value=0.17  Score=52.07  Aligned_cols=22  Identities=45%  Similarity=0.688  Sum_probs=19.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      .-|+|+|++|+||||+++.|..
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~   30 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFL   30 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4699999999999999998753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=89.09  E-value=0.19  Score=48.02  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      --|+|+|++|+|||++++.|...
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            36899999999999999998764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=89.07  E-value=0.21  Score=51.46  Aligned_cols=28  Identities=25%  Similarity=0.387  Sum_probs=23.7

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .....+.|+||+||||||+...++....
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            3456789999999999999999987654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.06  E-value=0.19  Score=48.55  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=21.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+|+|++|+||||+++.|...
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457899999999999999998854

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=89.05  E-value=0.28  Score=51.27  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=27.0

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.+|.+ +.. ..++|.||+|+|||++++.+++...
T Consensus        22 l~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~~   55 (357)
T 2fna_A           22 IEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINELN   55 (357)
T ss_dssp             HHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhcC
Confidence            445555 444 6899999999999999999987753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=89.02  E-value=0.2  Score=47.97  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=21.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.+...
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            457999999999999999998865

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=89.01  E-value=0.19  Score=48.44  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|++|+||||+++.|...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998754

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=89.00  E-value=0.3  Score=55.92  Aligned_cols=44  Identities=30%  Similarity=0.453  Sum_probs=34.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCC--CCeEEEEeCCCcccc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLG--YPARTYTLNPKAVSV  646 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~--~~~~~~~inpka~t~  646 (741)
                      ...++|.|.||||||++++++...+-...  ..++++.|+||....
T Consensus       214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eL  259 (574)
T 2iut_A          214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLEL  259 (574)
T ss_dssp             SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHH
T ss_pred             CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhh
Confidence            35678999999999999999888764332  358899999997543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=88.98  E-value=0.18  Score=48.97  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=19.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      ..-|+++|++|+||||+++.|..
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=88.97  E-value=0.17  Score=52.03  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .-|.|+|++|+||||+++.|....
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999997653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=88.97  E-value=0.2  Score=54.22  Aligned_cols=23  Identities=35%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      -++|+||+||||||+++++.-++
T Consensus        25 ~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999998764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=88.97  E-value=0.2  Score=50.34  Aligned_cols=24  Identities=33%  Similarity=0.338  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|.+.|++||||||+.+.|++.+.
T Consensus         4 ~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            4 RLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999999874

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=88.96  E-value=0.2  Score=48.35  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=20.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .--|+|+|++|+||||+++.|...
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhC
Confidence            347899999999999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=88.95  E-value=0.2  Score=47.62  Aligned_cols=23  Identities=26%  Similarity=0.534  Sum_probs=20.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      ..-|+++|++|+||||+++.|..
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            45799999999999999999874

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=88.95  E-value=0.35  Score=47.92  Aligned_cols=40  Identities=30%  Similarity=0.423  Sum_probs=28.7

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI  647 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~  647 (741)
                      |.+.|+-||||||.++.|++.+.. |.++.. .=.|......
T Consensus         5 I~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~-~~eP~~t~~g   44 (205)
T 4hlc_A            5 ITFEGPEGSGKTTVINEVYHRLVK-DYDVIM-TREPGGVPTG   44 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTT-TSCEEE-EESSTTCHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHC-CCCEEE-eeCCCCChHH
Confidence            668899999999999999999864 544433 3356544433

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.92  E-value=0.21  Score=48.56  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .+.-|+++|++|+||||+++.|...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcC
Confidence            3557999999999999999998864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=88.89  E-value=0.21  Score=48.77  Aligned_cols=23  Identities=17%  Similarity=0.505  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      --|+|+|++|+||||+++.|...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999998765

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=88.85  E-value=0.21  Score=54.88  Aligned_cols=25  Identities=32%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|+||||||||++...|++.+.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC
Confidence            3578999999999999999999874

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=88.85  E-value=0.19  Score=47.63  Aligned_cols=25  Identities=12%  Similarity=0.339  Sum_probs=21.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ...-|+++|++|+||||+++.|...
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4557999999999999999998754

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=88.83  E-value=0.26  Score=54.07  Aligned_cols=38  Identities=32%  Similarity=0.539  Sum_probs=26.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK  642 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk  642 (741)
                      ...++++|+||||||+.++.+...+-..|  ..+.+++||
T Consensus        53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g--~~viv~Dpk   90 (437)
T 1e9r_A           53 PRHLLVNGATGTGKSVLLRELAYTGLLRG--DRMVIVDPN   90 (437)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHHHTT--CEEEEEEET
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEeCC
Confidence            56788999999999999887776543333  234444554

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=88.75  E-value=0.2  Score=47.45  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=20.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.|...
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            446899999999999999998754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=88.73  E-value=0.4  Score=47.04  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=21.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|+|++|+||||+++.|.....
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4678999999999999999988753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=88.73  E-value=0.16  Score=58.05  Aligned_cols=27  Identities=26%  Similarity=0.378  Sum_probs=23.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ...+.|+|++||||||+.+.|++.+..
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence            446889999999999999999999864

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=88.71  E-value=0.21  Score=48.58  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=20.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +.-|+++|++|+||||+++.|...
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999998864

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=88.68  E-value=0.28  Score=50.51  Aligned_cols=33  Identities=33%  Similarity=0.455  Sum_probs=25.1

Q ss_pred             HHHHHHhhcc-ceEEEEecCCCChhHHHHHHHHH
Q psy17620        594 VQMYETMLTR-HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       594 ~qL~e~l~~r-~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .+|.+.+... ..++++|.||+||||+++.|...
T Consensus        89 ~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~  122 (262)
T 3cnl_A           89 VLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGK  122 (262)
T ss_dssp             HHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcc
Confidence            3444444333 58999999999999999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=88.67  E-value=0.16  Score=49.13  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      .-|+|+|++|+||||+++.|..
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999853

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=88.64  E-value=0.22  Score=48.11  Aligned_cols=23  Identities=26%  Similarity=0.458  Sum_probs=20.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|+||+||||+++.+...
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999998854

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=88.63  E-value=0.22  Score=48.66  Aligned_cols=24  Identities=21%  Similarity=0.501  Sum_probs=21.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.|...
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999999874

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=88.60  E-value=0.14  Score=48.37  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=9.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+++|++|+||||+++.|...
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEECCCCC------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998754

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=88.57  E-value=0.24  Score=48.91  Aligned_cols=25  Identities=28%  Similarity=0.522  Sum_probs=21.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-.+|+||.||||||++.++.-++.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3568999999999999999988875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=88.55  E-value=0.14  Score=58.77  Aligned_cols=27  Identities=26%  Similarity=0.474  Sum_probs=23.3

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||+++.|++.+.
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345688999999999999999998764

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=88.52  E-value=1  Score=44.92  Aligned_cols=44  Identities=23%  Similarity=0.379  Sum_probs=29.3

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHH
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVI  620 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~  620 (741)
                      +++++.+....++..-. .+....+...+.+++.+|||||||.++
T Consensus        40 l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~l~~a~TGsGKT~~~   83 (245)
T 3dkp_A           40 LLQNILDAGFQMPTPIQ-MQAIPVMLHGRELLASAPTGSGKTLAF   83 (245)
T ss_dssp             HHHHHHHTTCCSCCHHH-HHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred             HHHHHHHCCCCCCCHHH-HHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence            57777776665543221 123344455677999999999999874

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=88.48  E-value=0.22  Score=48.16  Aligned_cols=23  Identities=22%  Similarity=0.603  Sum_probs=20.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      .--|+|+|++|+||||+++.|..
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            34789999999999999999874

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=88.41  E-value=0.25  Score=49.56  Aligned_cols=27  Identities=26%  Similarity=0.224  Sum_probs=23.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ..-|++.|++||||||..+.|++.+..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            346789999999999999999999864

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=88.29  E-value=0.22  Score=47.91  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             cceEEEEecCCCChhHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALV  624 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~  624 (741)
                      .--|+++|++|+|||++++.|.
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHH
Confidence            3469999999999999999875

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=88.21  E-value=0.082  Score=53.57  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.|+||+||||||++++++.++.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcccc
Confidence            45889999999999999999875

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=88.18  E-value=0.25  Score=47.73  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +.-|+++|++|+||||+++.|...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            446899999999999999998864

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=88.14  E-value=0.35  Score=53.97  Aligned_cols=31  Identities=23%  Similarity=0.416  Sum_probs=25.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      ...|+|+|.|||||||+.+.|++.+...+.+
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~   69 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVP   69 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhccCCC
Confidence            4478999999999999999999987644333

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=88.14  E-value=0.24  Score=55.77  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=22.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++|+..+.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCC
Confidence            4678999999999999999998864

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=88.12  E-value=0.23  Score=47.67  Aligned_cols=25  Identities=16%  Similarity=0.280  Sum_probs=20.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ...-|+++|++|+||||+++.|...
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3457899999999999999998743

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=88.08  E-value=0.22  Score=47.74  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=19.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      --|+++|++|+||||+++.|..
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=88.06  E-value=0.26  Score=47.02  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      --|+++|++|+|||++++.|...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999865

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=87.99  E-value=1.2  Score=42.78  Aligned_cols=45  Identities=18%  Similarity=0.211  Sum_probs=27.9

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHH
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVIN  621 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~  621 (741)
                      +++++.+....++..-. .+..+.+...+.+++.+|||||||.++-
T Consensus        12 l~~~l~~~~~~~~~~~Q-~~~i~~~~~~~~~li~~~TGsGKT~~~~   56 (207)
T 2gxq_A           12 ILEALHGRGLTTPTPIQ-AAALPLALEGKDLIGQARTGTGKTLAFA   56 (207)
T ss_dssp             HHHHHHHTTCCSCCHHH-HHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred             HHHHHHHcCCCCCCHHH-HHHHHHHcCCCCEEEECCCCChHHHHHH
Confidence            45666665554443221 1223344456789999999999998743

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=87.95  E-value=0.52  Score=50.03  Aligned_cols=51  Identities=24%  Similarity=0.318  Sum_probs=35.0

Q ss_pred             HHHHHHhccCCCcchhh-----HHHHHHHhhc----------------cceEEEEecCCCChhHHHHHHHHH
Q psy17620        576 LMRALRDMNLPKFVSED-----VVQMYETMLT----------------RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       576 l~ral~~~~lPkl~~~D-----v~qL~e~l~~----------------r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ++.+.++.++|=+..+.     +.+|...+..                ..||++.|+||+||||+...|.+.
T Consensus        96 lie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A           96 LIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             HHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             HHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            45555666777543322     4444444444                568999999999999998888774

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=87.95  E-value=0.23  Score=47.32  Aligned_cols=25  Identities=24%  Similarity=0.465  Sum_probs=21.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ...-|+|+|++|+||||+++.|...
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3557999999999999999988643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=87.94  E-value=0.25  Score=48.43  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      ..-|+++|++|+||||+++.|..
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            35799999999999999999874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=87.85  E-value=0.12  Score=54.81  Aligned_cols=25  Identities=32%  Similarity=0.521  Sum_probs=21.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ...++|+||||+||||+++.|....
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccc
Confidence            5689999999999999999987653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=87.83  E-value=0.21  Score=47.63  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..-|+++|++|+||||+++.|....
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            4579999999999999999987653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=87.77  E-value=0.28  Score=47.59  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=20.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+|+|++|+||||+++.|...
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhC
Confidence            346899999999999999998754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=87.70  E-value=0.25  Score=48.17  Aligned_cols=23  Identities=17%  Similarity=0.354  Sum_probs=20.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      --|+|+|++|+||||+++.|...
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999998753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=87.66  E-value=0.3  Score=47.56  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=20.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..||++.|+||+||||+.-.|.+.
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            458999999999999998888764

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=87.59  E-value=0.41  Score=51.76  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=25.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      ...+.|+|||||||||+...++......+.++
T Consensus        61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~V   92 (356)
T 3hr8_A           61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVA   92 (356)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            45688999999999999999988766555444

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=87.58  E-value=0.21  Score=47.50  Aligned_cols=23  Identities=17%  Similarity=0.416  Sum_probs=20.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALV  624 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~  624 (741)
                      .+.-|+++|++|+||||+++.|.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            35579999999999999999874

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=87.40  E-value=0.3  Score=47.40  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      --|+++|++|+|||++++.|...
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998854

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=87.35  E-value=0.26  Score=48.85  Aligned_cols=24  Identities=21%  Similarity=0.464  Sum_probs=20.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+|+|++|+||||+++.|...
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999998653

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=87.34  E-value=0.2  Score=57.58  Aligned_cols=26  Identities=23%  Similarity=0.465  Sum_probs=22.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||+++.|+..+.
T Consensus       369 G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          369 GKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhccC
Confidence            44688999999999999999988764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=87.26  E-value=0.25  Score=50.57  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=19.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|.|+|+||+||||+++.|...
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4889999999999999999765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=87.25  E-value=0.29  Score=47.04  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      ..-|+++|++|+|||++++.+..
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            44799999999999999997665

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=87.06  E-value=0.32  Score=47.23  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=20.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.+...
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            457999999999999999988753

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=86.99  E-value=1.4  Score=44.35  Aligned_cols=45  Identities=18%  Similarity=0.208  Sum_probs=28.0

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHH
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVIN  621 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~  621 (741)
                      +.+++......++..-. .+....+...+.+++++|||||||.++-
T Consensus        54 l~~~l~~~g~~~~~~~Q-~~~i~~i~~~~~~lv~a~TGsGKT~~~~   98 (249)
T 3ber_A           54 LCEACDQLGWTKPTKIQ-IEAIPLALQGRDIIGLAETGSGKTGAFA   98 (249)
T ss_dssp             HHHHHHHTTCCSCCHHH-HHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred             HHHHHHHcCCCCCCHHH-HHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence            45666665554433211 1233444566889999999999998754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=86.92  E-value=0.31  Score=49.38  Aligned_cols=24  Identities=33%  Similarity=0.562  Sum_probs=20.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+|+|++|+||||+++.|...
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999998754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=86.86  E-value=0.31  Score=47.98  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|++|+||||+++.|...
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999998764

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=86.82  E-value=0.94  Score=44.37  Aligned_cols=66  Identities=14%  Similarity=0.112  Sum_probs=35.9

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHHHHHH-HhccCCCCeEEEEeCCC
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVK-TSTVLGYPARTYTLNPK  642 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~-a~~~~~~~~~~~~inpk  642 (741)
                      +.+++.+....++..-. .+..+.+.....+++++|||||||.++-..+- .+..-+....+.++-|.
T Consensus        15 l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt   81 (219)
T 1q0u_A           15 IIEAIKTLRFYKPTEIQ-ERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT   81 (219)
T ss_dssp             HHHHHHHTTCCSCCHHH-HHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred             HHHHHHHCCCCCCCHHH-HHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence            56667666654443211 11233444567899999999999987543222 22111123345555564

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=86.73  E-value=0.3  Score=50.61  Aligned_cols=23  Identities=17%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|.|+|+||+||||+++.|...
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            45889999999999999999864

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=86.68  E-value=1.2  Score=47.34  Aligned_cols=67  Identities=13%  Similarity=0.203  Sum_probs=36.6

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhcc--ceEEEEecCCCChhHHHHH-HHHHhccCCCCeEEEEeCCCc
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTR--HSTMIVGPTGGGKSVVINA-LVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r--~gv~lvGp~gsGKTt~~~~-L~~a~~~~~~~~~~~~inpka  643 (741)
                      +++++......++..-.. +..+.+...  +.+++++|||||||.++-. +...+..-+....+.++-|..
T Consensus        36 l~~~l~~~g~~~~~~~Q~-~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~  105 (412)
T 3fht_A           36 LLQGVYAMGFNRPSKIQE-NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY  105 (412)
T ss_dssp             HHHHHHHTTCCSCCHHHH-HHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred             HHHHHHHcCCCCCCHHHH-HHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCH
Confidence            566777666554432211 123333343  7899999999999987532 222222222223455566643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=86.66  E-value=0.21  Score=57.60  Aligned_cols=27  Identities=33%  Similarity=0.666  Sum_probs=23.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|++.+.
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            355789999999999999999987654

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=86.65  E-value=1.6  Score=44.07  Aligned_cols=34  Identities=18%  Similarity=0.063  Sum_probs=30.7

Q ss_pred             EecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        609 VGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       609 vGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      -|..|+||||+.-.|+.++. .|.++-....+|..
T Consensus        34 s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~   67 (267)
T 3k9g_A           34 SIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA   67 (267)
T ss_dssp             CSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred             eCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence            47888999999999999999 89999999999976

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=86.59  E-value=7.9  Score=43.53  Aligned_cols=85  Identities=13%  Similarity=0.056  Sum_probs=50.9

Q ss_pred             HhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccC-CCCCCCCchHHHhhc
Q psy17620        417 GLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNP-GYAGRTELPESVKAL  495 (741)
Q Consensus       417 Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNp-gy~gr~eLP~nLk~l  495 (741)
                      |....+.++++||+|+++.++.+.+-+       ++.  ...+...|....++..+ ++++.|| .-.|  .+++.|...
T Consensus       105 g~l~~~~IL~IDEI~r~~~~~q~~LL~-------~le--e~~v~i~G~~~~~~~~~-iI~ATN~lpe~~--~~~~aLldR  172 (500)
T 3nbx_X          105 GYLPEAEIVFLDEIWKAGPAILNTLLT-------AIN--ERQFRNGAHVEKIPMRL-LVAASNELPEAD--SSLEALYDR  172 (500)
T ss_dssp             TSGGGCSEEEEESGGGCCHHHHHHHHH-------HHH--SSEEECSSSEEECCCCE-EEEEESSCCCTT--CTTHHHHTT
T ss_pred             cCCCcceeeeHHhHhhhcHHHHHHHHH-------HHH--HHhccCCCCcCCcchhh-hhhccccCCCcc--ccHHHHHHH
Confidence            333346689999999999988876533       332  24566678877777666 4455564 1112  133455555


Q ss_pred             c-eeeeccCCCH-HHHHHHH
Q psy17620        496 F-RPVVCIVPDF-ELICQIM  513 (741)
Q Consensus       496 F-Rpvam~~PD~-~~I~ei~  513 (741)
                      | ..+.+..|+. +...+++
T Consensus       173 F~~~i~v~~p~~~ee~~~IL  192 (500)
T 3nbx_X          173 MLIRLWLDKVQDKANFRSML  192 (500)
T ss_dssp             CCEEEECCSCCCHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHH
Confidence            5 3466677876 3333343

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=86.59  E-value=0.44  Score=55.25  Aligned_cols=29  Identities=31%  Similarity=0.463  Sum_probs=24.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      -|+|+|.+||||||+.+.|++.+...|.+
T Consensus        54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~   82 (630)
T 1x6v_B           54 TVWLTGLSGAGKTTVSMALEEYLVCHGIP   82 (630)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCe
Confidence            48999999999999999999998554544

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=86.58  E-value=0.34  Score=52.02  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=22.7

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ....+.|+||+||||||+.+.++...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45568899999999999999999875

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=86.57  E-value=0.15  Score=52.06  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|.|.|++||||||+.+.|++.+.
T Consensus        25 ~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           25 KKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3578999999999999999998863

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=86.49  E-value=0.28  Score=50.22  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|+||+||||+++.|...
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            35899999999999999999764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=86.41  E-value=0.3  Score=55.72  Aligned_cols=27  Identities=33%  Similarity=0.448  Sum_probs=23.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....+.|+||+||||||++++|+..+.
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            455688999999999999999998653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=86.35  E-value=0.35  Score=47.47  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=21.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +.-|+|+|++|+|||++++.|...
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            457999999999999999998764

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=86.24  E-value=0.81  Score=45.09  Aligned_cols=46  Identities=20%  Similarity=0.311  Sum_probs=29.4

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHHH
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINA  622 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~  622 (741)
                      +++++.+....++..-. .+....+...+.+++++|||||||.++-.
T Consensus        31 l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~l~~apTGsGKT~~~~l   76 (228)
T 3iuy_A           31 LLKSIIRVGILKPTPIQ-SQAWPIILQGIDLIVVAQTGTGKTLSYLM   76 (228)
T ss_dssp             HHHHHHHHTCCSCCHHH-HHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred             HHHHHHHCCCCCCCHHH-HHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence            56777766554443221 12234445677899999999999987543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=86.19  E-value=0.55  Score=48.06  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=21.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-|+++|++|+||||+++.|...
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Confidence            447899999999999999998754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=86.13  E-value=0.43  Score=48.40  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=21.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -.-|.|+|||||||..+.|++.++
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhC
Confidence            567999999999999999999874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=86.05  E-value=0.35  Score=53.68  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=23.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...-+.|+||+||||||++++++....
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            345678999999999999999998863

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=86.04  E-value=1.4  Score=45.94  Aligned_cols=44  Identities=16%  Similarity=0.280  Sum_probs=27.9

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhcc--ceEEEEecCCCChhHHH
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTR--HSTMIVGPTGGGKSVVI  620 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r--~gv~lvGp~gsGKTt~~  620 (741)
                      +++++......++..-.. +.+..+...  +.+++++|||||||.++
T Consensus       103 l~~~l~~~g~~~pt~iQ~-~ai~~il~~~~~~~l~~a~TGsGKT~a~  148 (300)
T 3fmo_B          103 LLQGVYAMGFNRPSKIQE-NALPLMLAEPPQNLIAQSQSGTGKTAAF  148 (300)
T ss_dssp             HHHHHHHTTCCSCCHHHH-HHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred             HHHHHHHcCCCCCCHHHH-HHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence            566676665555442211 123334443  78999999999999885

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=85.97  E-value=0.37  Score=51.85  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=22.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+|+||||+++++++...
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45678999999999999999999864

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=85.87  E-value=1.8  Score=42.81  Aligned_cols=45  Identities=13%  Similarity=0.225  Sum_probs=28.6

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHH
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVIN  621 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~  621 (741)
                      +.+++.+....++..-. .+....+.....+++++|||||||.++-
T Consensus        35 l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~l~~a~TGsGKT~~~~   79 (230)
T 2oxc_A           35 VLEGLRAAGFERPSPVQ-LKAIPLGRCGLDLIVQAKSGTGKTCVFS   79 (230)
T ss_dssp             HHHHHHHTTCCSCCHHH-HHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred             HHHHHHHCCCCCCCHHH-HHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence            56666666554443211 1233444556789999999999998754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=85.81  E-value=0.18  Score=48.45  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=4.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      --|+|+|++|+||||+++.|...
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999988765

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=85.69  E-value=0.32  Score=52.17  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=20.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+|+|++||||||+++.|...
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7899999999999999999874

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=85.64  E-value=0.26  Score=57.04  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=20.3

Q ss_pred             EEEEecCCCChhHHHHHHHHHh
Q psy17620        606 TMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +.|+||+||||||++++|++..
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC
T ss_pred             EEEECCCCChHHHHHHHHhCCC
Confidence            7899999999999999998764

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=85.62  E-value=1.1  Score=49.42  Aligned_cols=67  Identities=13%  Similarity=0.182  Sum_probs=36.8

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhcc--ceEEEEecCCCChhHHHHHHH-HHhccCCCCeEEEEeCCCc
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTR--HSTMIVGPTGGGKSVVINALV-KTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r--~gv~lvGp~gsGKTt~~~~L~-~a~~~~~~~~~~~~inpka  643 (741)
                      +++++......++..-.. +....+...  +.+++.||||||||.++-... ..+..-+....+.++-|.-
T Consensus       103 l~~~l~~~g~~~p~~~Q~-~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~  172 (479)
T 3fmp_B          103 LLQGVYAMGFNRPSKIQE-NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY  172 (479)
T ss_dssp             HHHHHHHTTCCSCCHHHH-HHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSH
T ss_pred             HHHHHHHcCCCCCCHHHH-HHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChH
Confidence            566777666655543221 122333333  789999999999998853322 1221112223556666653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=85.46  E-value=0.39  Score=47.62  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      .-|+|+|++|+|||++++.+..
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999998863

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=85.34  E-value=0.18  Score=57.85  Aligned_cols=26  Identities=35%  Similarity=0.558  Sum_probs=22.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||+++.|.+.+.
T Consensus       367 G~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          367 GETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCC
Confidence            45688999999999999999887654

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=85.33  E-value=0.52  Score=54.12  Aligned_cols=28  Identities=25%  Similarity=0.353  Sum_probs=24.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      .-|++.|++||||||+.+.|++.+...|
T Consensus       397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G  424 (573)
T 1m8p_A          397 FTIFLTGYMNSGKDAIARALQVTLNQQG  424 (573)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHC
T ss_pred             eEEEeecCCCCCHHHHHHHHHHHhcccC
Confidence            3578999999999999999999987544

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=85.22  E-value=1.1  Score=44.70  Aligned_cols=46  Identities=13%  Similarity=0.190  Sum_probs=28.0

Q ss_pred             HHHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHH
Q psy17620        575 VLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVIN  621 (741)
Q Consensus       575 ~l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~  621 (741)
                      -+++++......++..-.. +....+...+.+++++|||||||.++-
T Consensus        40 ~l~~~l~~~g~~~~~~~Q~-~ai~~i~~~~~~li~apTGsGKT~~~~   85 (237)
T 3bor_A           40 SLLRGIYAYGFEKPSAIQQ-RAIIPCIKGYDVIAQAQSGTGKTATFA   85 (237)
T ss_dssp             HHHHHHHHHTCCSCCHHHH-HHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHH-HHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence            3556666655544432211 222334456779999999999998743

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=85.19  E-value=0.37  Score=55.81  Aligned_cols=19  Identities=37%  Similarity=0.522  Sum_probs=0.0

Q ss_pred             EEEEecCCCChhHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALV  624 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~  624 (741)
                      +-|+||+||||||++++|+
T Consensus       106 ~~LvGpNGaGKSTLLkiL~  124 (608)
T 3j16_B          106 LGLVGTNGIGKSTALKILA  124 (608)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCChHHHHHHHHh

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=85.11  E-value=0.22  Score=48.74  Aligned_cols=24  Identities=29%  Similarity=0.464  Sum_probs=21.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +.-|+|+|++|+||||+++.|...
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            457899999999999999998764

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=85.10  E-value=1.6  Score=43.22  Aligned_cols=45  Identities=16%  Similarity=0.195  Sum_probs=28.4

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHH
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVIN  621 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~  621 (741)
                      +.+++.+....++..- =.+....+...+.+++.+|||||||.++-
T Consensus        36 l~~~l~~~~~~~~~~~-Q~~~i~~~~~~~~~li~a~TGsGKT~~~~   80 (236)
T 2pl3_A           36 TLKGLQEAQYRLVTEI-QKQTIGLALQGKDVLGAAKTGSGKTLAFL   80 (236)
T ss_dssp             HHHHHHHTTCCBCCHH-HHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred             HHHHHHHCCCCCCCHH-HHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence            4566666555444321 11233445567789999999999998744

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=85.06  E-value=0.59  Score=53.36  Aligned_cols=31  Identities=19%  Similarity=0.247  Sum_probs=26.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPA  634 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~  634 (741)
                      .-|++.|++||||||+.+.|++.+...|.++
T Consensus       373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~  403 (546)
T 2gks_A          373 FCVWLTGLPCAGKSTIAEILATMLQARGRKV  403 (546)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             eEEEccCCCCCCHHHHHHHHHHHhhhcCCeE
Confidence            4588999999999999999999887656443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=85.06  E-value=0.39  Score=50.30  Aligned_cols=22  Identities=36%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|.|+|+||+||||+++.|...
T Consensus        10 ~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A           10 FIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999999864

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=85.03  E-value=2.4  Score=41.31  Aligned_cols=66  Identities=12%  Similarity=0.106  Sum_probs=35.4

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh-ccCCCCeEEEEeCCC
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS-TVLGYPARTYTLNPK  642 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~-~~~~~~~~~~~inpk  642 (741)
                      +++++.+....++..-. .+..+.+.....+++.+|||||||.++-..+... ........+.++-|.
T Consensus        25 l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt   91 (220)
T 1t6n_A           25 LLRAIVDCGFEHPSEVQ-HECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT   91 (220)
T ss_dssp             HHHHHHHTTCCCCCHHH-HHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred             HHHHHHHCCCCCCCHHH-HHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence            45666665554333211 1222333445679999999999998765433322 111122355566564

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=85.02  E-value=0.54  Score=46.59  Aligned_cols=46  Identities=20%  Similarity=0.205  Sum_probs=39.1

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV  652 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~  652 (741)
                      |.+.|..|+||||+.-.|+.++...|.++-....+|. -+...++|.
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~   48 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGL   48 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTC
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCC
Confidence            4558999999999999999999999999999999996 555666654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=84.97  E-value=0.39  Score=49.40  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+|+|++|+||||+++.|...
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTS
T ss_pred             eEEEEeCCCCCHHHHHHHHHCC
Confidence            5899999999999999999764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=84.94  E-value=0.34  Score=52.26  Aligned_cols=22  Identities=45%  Similarity=0.688  Sum_probs=19.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      -.|+|+|++|+||||+++.|..
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~   59 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFL   59 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHhC
Confidence            3589999999999999999754

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=84.92  E-value=0.55  Score=46.20  Aligned_cols=26  Identities=19%  Similarity=0.180  Sum_probs=23.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +..|.|.|++||||||+-+.|++.++
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            45788999999999999999999874

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=84.83  E-value=0.73  Score=49.50  Aligned_cols=37  Identities=24%  Similarity=0.226  Sum_probs=26.9

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEE
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT  638 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~  638 (741)
                      ....+.|+|||||||||+...++......|.++.+..
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~   96 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID   96 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            4567899999999999998888766544454444433

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=84.78  E-value=0.41  Score=51.77  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=19.5

Q ss_pred             EEEEecCCCChhHHHHHHHHHh
Q psy17620        606 TMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      |.|+|+||+||||+++.|....
T Consensus       182 V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          182 IGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             EEEECBTTSSHHHHHHHHHCC-
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            8899999999999999998653

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=84.78  E-value=0.72  Score=48.74  Aligned_cols=48  Identities=21%  Similarity=0.158  Sum_probs=41.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV  652 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~  652 (741)
                      .-++..|..|+||||+.-.|+.++...|.++-....+| +-+...+||.
T Consensus        15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l~~   62 (324)
T 3zq6_A           15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLSDSLER   62 (324)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHHHHHTS
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHHHHhCC
Confidence            45677899999999999999999998899999999999 6676777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	741
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.94
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.66
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.03
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.9
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.9
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.89
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.68
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.66
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.58
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.55
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.48
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.48
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.48
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.34
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.3
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.29
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.28
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.27
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.27
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.26
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.25
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.21
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.2
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.17
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.16
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.15
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.14
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.1
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.1
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.08
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.06
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.03
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.98
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.94
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.93
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.92
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.86
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.84
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.8
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.79
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.77
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.76
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.75
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.75
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.74
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.72
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.7
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.7
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.66
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.64
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.55
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.55
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.53
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.52
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.46
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.43
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.37
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.31
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.26
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.25
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.21
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.2
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.2
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.19
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.12
d1okkd2	207	GTPase domain of the signal recognition particle r	95.11
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.09
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.05
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.02
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.99
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	94.94
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.93
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.9
d1ls1a2	207	GTPase domain of the signal sequence recognition p	94.84
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.74
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.72
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.48
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.42
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	94.34
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.26
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.25
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.15
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.14
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.04
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.03
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.87
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	93.86
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.79
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.65
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.59
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.28
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.27
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.26
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.22
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.21
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.13
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.12
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.12
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.09
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.99
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.95
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	92.88
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	92.85
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.83
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	92.81
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.77
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	92.73
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.6
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.53
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.51
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	92.49
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.41
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	92.41
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.34
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	92.19
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.15
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.15
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.05
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	91.98
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	91.82
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	91.79
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	91.77
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	91.67
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	91.59
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.51
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	91.5
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	91.45
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	91.45
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	91.2
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.1
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	90.99
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.98
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	90.95
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	90.95
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	90.92
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	90.88
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	90.85
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	90.78
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	90.77
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	90.77
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.75
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	90.73
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	90.6
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	90.57
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	90.54
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	90.52
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	90.48
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	90.4
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	90.38
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.26
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	90.24
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	90.13
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	90.12
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.03
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	89.99
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	89.96
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	89.95
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	89.94
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	89.77
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	89.75
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	89.6
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	89.47
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	89.41
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	89.36
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	89.32
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	89.32
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	89.23
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.19
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.18
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	89.09
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	89.08
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	89.06
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	89.04
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	89.0
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	88.99
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	88.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	88.85
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	88.81
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	88.76
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	88.75
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	88.71
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	88.7
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	88.62
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	88.53
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	88.46
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	88.36
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	88.36
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	88.35
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	88.3
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	88.29
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	88.26
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	88.12
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	87.88
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.86
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.82
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	87.71
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	87.69
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	87.63
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.51
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	87.48
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	87.34
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	87.16
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.12
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	86.94
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	86.67
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	86.52
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	86.1
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	85.86
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	85.73
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	85.48
d1tuea_	205	Replication protein E1 helicase domain {Human papi	85.22
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	85.17
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	84.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	84.59
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	84.58
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	84.41
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	83.91
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	83.85
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	83.64
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	83.64
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	83.44
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	82.65
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	82.63
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	82.5
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	82.46
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.92
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	81.25
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	80.42
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	80.23
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	80.16
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	80.13

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=1.4e-06  Score=85.20  Aligned_cols=134  Identities=13%  Similarity=0.044  Sum_probs=76.1

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCC-eEE--EEeCCCccccccccccccCCCCCcccChHHHHHHH
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYP-ART--YTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRA  671 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~-~~~--~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~  671 (741)
                      +.++.-...|+++++||+|+|||++++.+++.+...... ...  ...+++.+....-.+.+.....++...+-...+|+
T Consensus        16 ~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ir~   95 (207)
T d1a5ta2          16 ASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVRE   95 (207)
T ss_dssp             HHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHH
T ss_pred             HHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhcccccccchhhH
Confidence            334444457899999999999999999999987422110 000  00000011111111222222223444443444444


Q ss_pred             hcCC--CCCCCCCCeEEEEcCCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCCCCCCCC
Q psy17620        672 VNKP--LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDSHP  739 (741)
Q Consensus       672 ~~~~--~~~~~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L~~aSPA  739 (741)
                      +.+.  ........+++|+| ++|....+..|++|-   .|-       ..|+++++||-+++++..-|+
T Consensus        96 l~~~~~~~~~~~~~kviIid-e~d~l~~~a~n~Llk---~lE-------ep~~~~~fIl~t~~~~~ll~t  154 (207)
T d1a5ta2          96 VTEKLNEHARLGGAKVVWVT-DAALLTDAAANALLK---TLE-------EPPAETWFFLATREPERLLAT  154 (207)
T ss_dssp             HHHHTTSCCTTSSCEEEEES-CGGGBCHHHHHHHHH---HHT-------SCCTTEEEEEEESCGGGSCHH
T ss_pred             HhhhhhhccccCccceEEec-hhhhhhhhhhHHHHH---HHH-------hhcccceeeeeecChhhhhhh
Confidence            3211  11124567999999 888888888888762   111       136788999999998876653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.66  E-value=1.8e-05  Score=82.09  Aligned_cols=117  Identities=21%  Similarity=0.257  Sum_probs=84.0

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCC-----------------------CC----eEEEEeCCCcccccccccccc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLG-----------------------YP----ARTYTLNPKAVSVIELYGVLN  654 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~-----------------------~~----~~~~~inpka~t~~eLyG~~d  654 (741)
                      ..|+|+|+||||+|||++.+.++..+..+.                       ..    ....+-.+...+...++|.+|
T Consensus        27 ~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d  106 (333)
T d1g8pa_          27 GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD  106 (333)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC
T ss_pred             CCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccccccchhhccccCcccccCceeeccCCCCcccccCcch
Confidence            578999999999999999999998762110                       00    011233456677788999876


Q ss_pred             CC------CCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceE
Q psy17620        655 PE------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQL  726 (741)
Q Consensus       655 ~~------t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rl  726 (741)
                      ..      ....+.|.++.+             ++.-+++|  +..++.-.+.|-.+|++++.-.=..|..+.+|..+.+
T Consensus       107 ~~~~~~~g~~~~~~G~l~~A-------------~~gvl~iDEi~~~~~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~l  173 (333)
T d1g8pa_         107 IERAISKGEKAFEPGLLARA-------------NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVL  173 (333)
T ss_dssp             HHHHHHHCGGGEECCHHHHH-------------TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEE
T ss_pred             hhhccccCcceeeccccccc-------------cccEeecccHHHHHHHHHHHHhhhhcCCeEEecccCceecCCCCEEE
Confidence            42      123567877654             34688889  7789999999999999875544457888898888877


Q ss_pred             EEEeC
Q psy17620        727 LFEIH  731 (741)
Q Consensus       727 iFE~~  731 (741)
                      +....
T Consensus       174 iaa~N  178 (333)
T d1g8pa_         174 VGSGN  178 (333)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            76544

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.00066  Score=69.93  Aligned_cols=115  Identities=21%  Similarity=0.239  Sum_probs=71.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCCCCCcccChHHHHHHHhcCCCCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS  680 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~  680 (741)
                      .++++||||+|||.+.+.|++.+-  |.......+|-...+    ...|.|.-..-.+.=..|.++..+++.        
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~--~~~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~--------  124 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRR--------  124 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHC--------
T ss_pred             EEEEECCCcchHHHHHHHHHHHhc--CCCcceEEEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHhC--------
Confidence            456789999999999999999973  223344555544443    355665421101111247888888742        


Q ss_pred             CCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620        681 KERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI  733 (741)
Q Consensus       681 ~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L  733 (741)
                       ...-|+||  .-+++...+.|-.+||++ .++-.+|..+.+.+.  +++-|+++
T Consensus       125 -p~~Vvl~DEieK~~~~v~~~ll~~l~~g-~~~~~~gr~v~~~~~--i~i~tsnl  175 (315)
T d1qvra3         125 -PYSVILFDEIEKAHPDVFNILLQILDDG-RLTDSHGRTVDFRNT--VIILTSNL  175 (315)
T ss_dssp             -SSEEEEESSGGGSCHHHHHHHHHHHTTT-EECCSSSCCEECTTE--EEEEECCT
T ss_pred             -CCcEEEEehHhhcCHHHHHHHHHHhccC-ceeCCCCcEecCcce--EEEEeccc
Confidence             35789999  346788888888888875 677788888887653  44446665

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0011  Score=66.26  Aligned_cols=67  Identities=21%  Similarity=0.396  Sum_probs=43.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE  682 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~  682 (741)
                      ..|++|+||||||||++.+.+++.++     ..++.+++..+. +.++|.-        ..-+..+++.+...      .
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~-----~~~~~i~~~~l~-~~~~g~~--------~~~l~~~f~~A~~~------~  104 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGSDFV-EMFVGVG--------ASRVRDMFEQAKKA------A  104 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHT-----CCEEEECSCSST-TSCCCCC--------HHHHHHHHHHHHTT------C
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcC-----CCEEEEEhHHhh-hcchhHH--------HHHHHHHHHHHHHc------C
Confidence            46899999999999999999998874     345666665443 2222321        23466777766432      3


Q ss_pred             CeEEEEc
Q psy17620        683 RKYILFD  689 (741)
Q Consensus       683 ~~WIVfD  689 (741)
                      +..|++|
T Consensus       105 P~il~iD  111 (256)
T d1lv7a_         105 PCIIFID  111 (256)
T ss_dssp             SEEEEET
T ss_pred             CEEEEEE
Confidence            4566677

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00021  Score=64.12  Aligned_cols=26  Identities=31%  Similarity=0.600  Sum_probs=23.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +..|+|+|||||||||+-+.|++.++
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            34799999999999999999999874

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0007  Score=69.67  Aligned_cols=113  Identities=23%  Similarity=0.213  Sum_probs=75.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCCCCCcccChHHHHHHHhcCCCCCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS  680 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~  680 (741)
                      .++++||||+|||.+.+.|++++.     ....+++-..++    ..+|.|.-..--+.=..|.+...+++.        
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~-----~~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~~--------  120 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH--------  120 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHC--------
T ss_pred             EEEEECCCcchhHHHHHHHHhhcc-----CCeeEeccccccchhhhhhhcccCCCccccccCChhhHHHHhC--------
Confidence            578999999999999999999974     234555544433    355666531111111236777776642        


Q ss_pred             CCCeEEEEcC--CCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCCC
Q psy17620        681 KERKYILFDG--DVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQ  734 (741)
Q Consensus       681 ~~~~WIVfDG--~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L~  734 (741)
                       ...-++||.  -+++.....|-.+||+. .++-++|..+...+.  +++=|+++.
T Consensus       121 -~~~vvl~DeieKa~~~V~~~lLqild~G-~ltd~~Gr~vdf~n~--iiI~Tsnig  172 (315)
T d1r6bx3         121 -PHAVLLLDEIEKAHPDVFNILLQVMDNG-TLTDNNGRKADFRNV--VLVMTTNAG  172 (315)
T ss_dssp             -SSEEEEEETGGGSCHHHHHHHHHHHHHS-EEEETTTEEEECTTE--EEEEEECSS
T ss_pred             -ccchhhhcccccccchHhhhhHHhhccc-eecCCCCCccCccce--EEEeccchh
Confidence             457899993  36777777777788755 678889988877654  444466664

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00052  Score=62.72  Aligned_cols=31  Identities=26%  Similarity=0.501  Sum_probs=26.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPAR  635 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~  635 (741)
                      .|+|+|||||||||+++.+++.+...+..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~   33 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVD   33 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence            5899999999999999999999876655443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00076  Score=61.24  Aligned_cols=39  Identities=13%  Similarity=0.159  Sum_probs=30.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      -+.++|++||||||+++.|++.+..-|..+-+..-.+..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~~   42 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   42 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccccc
Confidence            467999999999999999999988777666655555543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.58  E-value=0.001  Score=64.91  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=29.2

Q ss_pred             HHHHHHHhhc--------cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        593 VVQMYETMLT--------RHSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       593 v~qL~e~l~~--------r~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +.++++.+..        -.+++|+||||+|||++.+.+++.+..
T Consensus        25 i~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          25 LQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             HHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            5555555543        157999999999999999999999854

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00057  Score=62.42  Aligned_cols=27  Identities=26%  Similarity=0.469  Sum_probs=24.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+|-++|+|||||||||+.+.|++.++
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            467789999999999999999999874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.48  E-value=0.00058  Score=67.14  Aligned_cols=26  Identities=19%  Similarity=0.411  Sum_probs=23.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -.+|+|+||||||||++.+.|++.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            34799999999999999999999864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0023  Score=61.67  Aligned_cols=38  Identities=26%  Similarity=0.312  Sum_probs=29.8

Q ss_pred             ceEEE--EecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620        604 HSTMI--VGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK  642 (741)
Q Consensus       604 ~gv~l--vGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk  642 (741)
                      .|.+|  .|+.||||||.++.|++.+...|.++.... +|.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~-~p~   41 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR-FPE   41 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe-CCC
Confidence            44444  499999999999999999988887775443 554

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.48  E-value=0.00056  Score=61.97  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=22.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|+|||||||||+.+.|++.+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4589999999999999999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.34  E-value=0.00075  Score=61.37  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=22.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-|+|.|||||||||+.+.|++.++
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Confidence            45688999999999999999998864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.30  E-value=0.00068  Score=61.94  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=22.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|++.|||||||||+.+.|++.++
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.29  E-value=0.0016  Score=59.58  Aligned_cols=33  Identities=12%  Similarity=0.169  Sum_probs=27.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      .-|+|.|+|||||||+.+.|++.+...+.++..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~   34 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKM   34 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence            468899999999999999999998766555443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.28  E-value=0.0016  Score=63.02  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=27.7

Q ss_pred             HHHHHHHhhcc--ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        593 VVQMYETMLTR--HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       593 v~qL~e~l~~r--~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +.+|.+.+...  +.++|+||||+|||++++++++.+.
T Consensus        33 ~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          33 VKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             HHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            33455554443  4699999999999999999999864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.27  E-value=0.00096  Score=61.34  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=22.0

Q ss_pred             EEEEecCCCChhHHHHHHHHHhcc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      |.|+||+||||||+++.+++.+..
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC
Confidence            789999999999999999998753

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.27  E-value=0.0009  Score=60.89  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=23.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ....|+|.|+|||||||+.+.|++.+.
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            355789999999999999999999874

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0054  Score=61.44  Aligned_cols=74  Identities=14%  Similarity=0.275  Sum_probs=48.6

Q ss_pred             HHHHHHHhh--ccceEEEEecCCCChhHHHHHHHHHhccCC-----CCeEEEEeCCCccccccccccccCCCCCcccChH
Q psy17620        593 VVQMYETML--TRHSTMIVGPTGGGKSVVINALVKTSTVLG-----YPARTYTLNPKAVSVIELYGVLNPETRDWYDGLL  665 (741)
Q Consensus       593 v~qL~e~l~--~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~-----~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvl  665 (741)
                      +.++.+.|.  .++.++||||||+|||++++.|+..+..-.     ....++.+++.++-.+.=|      -++|.. .+
T Consensus        27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~------~g~~e~-r~   99 (268)
T d1r6bx2          27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY------RGDFEK-RF   99 (268)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCC------SSCHHH-HH
T ss_pred             HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCcc------chhHHH-HH
Confidence            888888886  466899999999999999999998765432     2346777777765432211      134433 34


Q ss_pred             HHHHHHhc
Q psy17620        666 SNIFRAVN  673 (741)
Q Consensus       666 s~i~R~~~  673 (741)
                      ..++.++.
T Consensus       100 ~~i~~~~~  107 (268)
T d1r6bx2         100 KALLKQLE  107 (268)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhh
Confidence            55666654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.25  E-value=0.0012  Score=67.69  Aligned_cols=38  Identities=24%  Similarity=0.443  Sum_probs=29.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS  645 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t  645 (741)
                      ..|++++||||||||.+.+.|++.+.     .....++...++
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~-----~~~~~i~~s~~~   86 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFT   86 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGS
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccc-----cchhcccccccc
Confidence            46899999999999999999999874     234555554443

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.21  E-value=0.0062  Score=60.11  Aligned_cols=122  Identities=17%  Similarity=0.245  Sum_probs=75.6

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC---CCCcccChH
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE---TRDWYDGLL  665 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~---t~eW~DGvl  665 (741)
                      ..++......+.+|+|.||+||||+.+.+.+......  .......++...++.    .+|||.....   ......|+|
T Consensus        13 ~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~--~~~~~~~~~~~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~l   90 (247)
T d1ny5a2          13 LEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR--SKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFF   90 (247)
T ss_dssp             HHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT--TTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHH
T ss_pred             HHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC--cccccccchhhhhhhcccHHHhcCcccCCcCCcccccCCHH
Confidence            3466677788999999999999999999999875432  223344455555553    5578864221   123456665


Q ss_pred             HHHHHHhcCCCCCCCCCCeEEEEcC--CCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620        666 SNIFRAVNKPLDPGSKERKYILFDG--DVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH  731 (741)
Q Consensus       666 s~i~R~~~~~~~~~~~~~~WIVfDG--~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~  731 (741)
                      ..    +         ..-.++||.  .+++.--+.|-.++++.....+.+...+  +.++|+||-++
T Consensus        91 ~~----a---------~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~--~~~~RlI~~s~  143 (247)
T d1ny5a2          91 EL----A---------DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEI--EVNVRILAATN  143 (247)
T ss_dssp             HH----T---------TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBE--ECCCEEEEEES
T ss_pred             Hc----c---------CCCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCce--ecCeEEEEecC
Confidence            43    1         235788884  4566655666666665554444433333  34688988764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.20  E-value=0.0016  Score=61.29  Aligned_cols=32  Identities=25%  Similarity=0.470  Sum_probs=26.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPART  636 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~  636 (741)
                      -|+++|.|||||||+.+.|++.++..+.++..
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~   35 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTRE   35 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCCeE
Confidence            47899999999999999999998766655443

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.17  E-value=0.0019  Score=63.95  Aligned_cols=67  Identities=15%  Similarity=0.291  Sum_probs=42.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE  682 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~  682 (741)
                      .+|++|+||||||||++.+.+++.++     ..++.+++.     ++.+.+-.+    +...+..+++.+..      ..
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~-----~~~~~i~~~-----~l~~~~~g~----~~~~l~~~f~~a~~------~~  101 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS-----DFVEMFVGV----GAARVRDLFETAKR------HA  101 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH-----HHHHSCTTH----HHHHHHHHHHHHTT------SS
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcC-----CCEEEEEhH-----HhhhccccH----HHHHHHHHHHHHHH------cC
Confidence            45899999999999999999998763     334455433     333222111    11235566666533      24


Q ss_pred             CeEEEEc
Q psy17620        683 RKYILFD  689 (741)
Q Consensus       683 ~~WIVfD  689 (741)
                      +..|++|
T Consensus       102 p~Ii~iD  108 (247)
T d1ixza_         102 PCIVFID  108 (247)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            4688888

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.002  Score=62.84  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=28.7

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV  644 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~  644 (741)
                      ++++|+||||+|||++++++++.+.     ..+..+|....
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~-----~~~~~~~~~~~   88 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQNASDV   88 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEECTTSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH-----hhhhccccccc
Confidence            5799999999999999999999864     34556665443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.15  E-value=0.0012  Score=60.03  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=23.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVL  630 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~  630 (741)
                      +.|.|+|+|||||||+-+.|++.++..
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~L~~~   33 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVTLNQQ   33 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            457799999999999999999998653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.14  E-value=0.0012  Score=62.05  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|+|||||||||+.+.|++.++
T Consensus         8 iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           8 VVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999874

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.10  E-value=0.0012  Score=64.03  Aligned_cols=106  Identities=15%  Similarity=0.225  Sum_probs=55.1

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKER  683 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~  683 (741)
                      ++++++||||+|||++.+.+++.+..     ....+|....             .  .-|-+..++...        ..+
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~-----~~~~~~~~~~-------------~--~~~~~~~~~~~~--------~~~   87 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQT-----NIHVTSGPVL-------------V--KQGDMAAILTSL--------ERG   87 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTC-----CEEEEETTTC-------------C--SHHHHHHHHHHC--------CTT
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCC-----CcccccCccc-------------c--cHHHHHHHHHhh--------ccC
Confidence            57999999999999999999998742     2233321111             1  123344454432        133


Q ss_pred             eEEEEc--CCCChhhhhhccccccCCceeecc----CCCeeec-CCCceEEEEeCCCCCCC
Q psy17620        684 KYILFD--GDVDALWIENMNSVMDDNKILTLA----NGERIRL-LAHCQLLFEIHPIQSDS  737 (741)
Q Consensus       684 ~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~----nGeri~l-~~~~rliFE~~~L~~aS  737 (741)
                      .-+++|  -.++..--+.+..++++.+...+.    +...+.. .+++.+|+-+.+-....
T Consensus        88 ~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~  148 (238)
T d1in4a2          88 DVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLS  148 (238)
T ss_dssp             CEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSC
T ss_pred             CchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCcccc
Confidence            567777  334555555566666655433322    2222322 33566666665544433

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.10  E-value=0.0013  Score=58.83  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=19.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-|+|+|||||||||+.+.|.+.
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            35889999999999999988654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.08  E-value=0.0014  Score=60.59  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=22.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..|+|+|+|||||||+-+.|++.++
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC
Confidence            5688999999999999999999875

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.06  E-value=0.0013  Score=60.01  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|.|||||||||+.+.|++.+.
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.03  E-value=0.0014  Score=60.49  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=21.4

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|.|||||||||+.+.|++.++
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999999874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.98  E-value=0.0016  Score=64.56  Aligned_cols=26  Identities=23%  Similarity=0.429  Sum_probs=23.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+||+|+||||||||++.+.+++.++
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccc
Confidence            35899999999999999999998864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.94  E-value=0.0017  Score=60.57  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=21.5

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|+|||||||||+.+.|++.++
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999999874

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.93  E-value=0.0017  Score=63.11  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=58.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKER  683 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~  683 (741)
                      .+++++||||+|||++.+++++.+.     .....++-....               .-|.....+++..       ...
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~-----~~~~~~~~~~~~---------------~~~~~~~~~~~~~-------~~~   88 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELG-----VNLRVTSGPAIE---------------KPGDLAAILANSL-------EEG   88 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT-----CCEEEEETTTCC---------------SHHHHHHHHHTTC-------CTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC-----CCeEeccCCccc---------------cchhhHHHHHhhc-------cCC
Confidence            5799999999999999999998763     222333211110               1122233333221       234


Q ss_pred             eEEEEcCC--CChhhhhhccccccCCceeeccC----C-CeeecCCCceEEEEeCCCCCCCCCC
Q psy17620        684 KYILFDGD--VDALWIENMNSVMDDNKILTLAN----G-ERIRLLAHCQLLFEIHPIQSDSHPR  740 (741)
Q Consensus       684 ~WIVfDG~--vd~~wiE~LNsvLDdnk~L~L~n----G-eri~l~~~~rliFE~~~L~~aSPAt  740 (741)
                      .-+++|.-  +...--+.+-+++++...-....    . ....-++++.+++-+.+.....|++
T Consensus        89 ~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  152 (239)
T d1ixsb2          89 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPL  152 (239)
T ss_dssp             CEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGG
T ss_pred             CeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCcccccchh
Confidence            56777721  23334444545554432211110    0 1122345677888888877766654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.92  E-value=0.003  Score=57.96  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=25.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPAR  635 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~  635 (741)
                      -+++.|++||||||+.+.|++.+..-|..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~~~~~~~   33 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNK   33 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence            3678899999999999999999876665554

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.86  E-value=0.0016  Score=65.12  Aligned_cols=34  Identities=21%  Similarity=0.459  Sum_probs=27.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP  641 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp  641 (741)
                      ..||+|+||||||||++.+.++..++     ..++.+++
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~-----~~~~~~~~   74 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKG   74 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTT-----CEEEEECH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhC-----CcEEEEEH
Confidence            45899999999999999999999874     34555554

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.84  E-value=0.002  Score=60.41  Aligned_cols=24  Identities=29%  Similarity=0.544  Sum_probs=21.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|+|||||||||..+.|++.++
T Consensus         5 riil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999874

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.80  E-value=0.0015  Score=59.60  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=21.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..-|+|.|||||||||+.+.|++.+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468899999999999999998764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.79  E-value=0.0022  Score=60.10  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|.|||||||||+.+.|++.++
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            488999999999999999999874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0023  Score=59.35  Aligned_cols=23  Identities=13%  Similarity=0.287  Sum_probs=21.2

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|+|||||||||..+.|++.++
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78899999999999999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.76  E-value=0.0028  Score=62.96  Aligned_cols=36  Identities=22%  Similarity=0.465  Sum_probs=28.9

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      ..|++|+||||||||++.+.++....     ..++.+++..
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~-----~~~~~i~~~~   73 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE   73 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTT-----CEEEEECHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhC-----CeEEEEEchh
Confidence            56999999999999999999999863     3555565443

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.75  E-value=0.0032  Score=64.90  Aligned_cols=34  Identities=18%  Similarity=0.402  Sum_probs=28.8

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|..++..+..++++||+||||||++++|.....
T Consensus       158 ~l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         158 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             HHHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             HHHHHHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence            3556667888999999999999999999987654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0022  Score=60.06  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|.|||||||||..+.|++.++
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            378999999999999999999874

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0037  Score=64.51  Aligned_cols=50  Identities=18%  Similarity=0.230  Sum_probs=36.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc-cccccc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYG  651 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t-~~eLyG  651 (741)
                      ..+.|-|+||||+||||++..|..++...|.++-+..++|.+-- -..++|
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailg  103 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILG  103 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeecccccc
Confidence            35568899999999999999999999888888889999998743 344544

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.72  E-value=0.0024  Score=58.53  Aligned_cols=24  Identities=33%  Similarity=0.502  Sum_probs=22.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|+|+|+|||||||+-+.|++.++
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999999984

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.70  E-value=0.0022  Score=60.38  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=22.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..|+|+|||||||||+.+.|++.++
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3578999999999999999999874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.70  E-value=0.0032  Score=59.22  Aligned_cols=30  Identities=20%  Similarity=0.357  Sum_probs=25.0

Q ss_pred             HhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        599 TMLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       599 ~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -+..-..|+|.|||||||||..+.|++.++
T Consensus         4 ~~~~~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           4 KLKKSKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             HHHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            344556788999999999999999999764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.0033  Score=60.44  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=28.6

Q ss_pred             HHHHHHHhhcc--ceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        593 VVQMYETMLTR--HSTMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       593 v~qL~e~l~~r--~gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +.+|.+.+...  +.++|+||||+||||+.+.+++.+..
T Consensus        24 ~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          24 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhc
Confidence            44555555543  35899999999999999999998753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.64  E-value=0.0027  Score=58.25  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=21.2

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|+|+|||||||+-+.|++.++
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78889999999999999999874

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.55  E-value=0.0051  Score=56.20  Aligned_cols=39  Identities=18%  Similarity=0.242  Sum_probs=30.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      .+-++|++||||||+++.|...+...|.++-+....+..
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~   41 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG   41 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCc
Confidence            355999999999999999999998877766655545443

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.55  E-value=0.003  Score=58.62  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|.|||||||||+.+.|++.++
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            378999999999999999999874

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.53  E-value=0.012  Score=61.80  Aligned_cols=85  Identities=15%  Similarity=0.323  Sum_probs=51.1

Q ss_pred             HHHHHHHhh--ccceEEEEecCCCChhHHHHHHHHHhccCC-----CCeEEEEeCCCccccccccccccCCCCCcccChH
Q psy17620        593 VVQMYETML--TRHSTMIVGPTGGGKSVVINALVKTSTVLG-----YPARTYTLNPKAVSVIELYGVLNPETRDWYDGLL  665 (741)
Q Consensus       593 v~qL~e~l~--~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~-----~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvl  665 (741)
                      +.++.++|.  .++.++||||||+|||++++.|+..+..-.     ...+++.+++.++-.+-=|      .++|...+ 
T Consensus        31 i~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~------~g~~e~r~-  103 (387)
T d1qvra2          31 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY------RGEFEERL-  103 (387)
T ss_dssp             HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------------CHHHHH-
T ss_pred             HHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCc------chhHHHHH-
Confidence            888888886  466899999999999999999998764322     1246777777665432222      14565543 


Q ss_pred             HHHHHHhcCCCCCCCCCCeEEEEc
Q psy17620        666 SNIFRAVNKPLDPGSKERKYILFD  689 (741)
Q Consensus       666 s~i~R~~~~~~~~~~~~~~WIVfD  689 (741)
                      ..++.++...     .++..+++|
T Consensus       104 ~~i~~~~~~~-----~~~~ilfid  122 (387)
T d1qvra2         104 KAVIQEVVQS-----QGEVILFID  122 (387)
T ss_dssp             HHHHHHHHTT-----CSSEEEEEC
T ss_pred             HHHHHHhccC-----CCceEEEec
Confidence            5556655432     234556666

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.52  E-value=0.003  Score=58.69  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=21.1

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |+|.|||||||||+.+.|++.++
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            77889999999999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0026  Score=59.01  Aligned_cols=28  Identities=29%  Similarity=0.389  Sum_probs=23.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGY  632 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~  632 (741)
                      .|+|+|+|||||||+-+.|++.++....
T Consensus        21 vI~L~G~pGSGKTTiAk~La~~l~~~~~   48 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEEYLVCHGI   48 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            4558999999999999999998865433

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.43  E-value=0.0024  Score=65.73  Aligned_cols=44  Identities=18%  Similarity=0.100  Sum_probs=30.9

Q ss_pred             ccceEEE-EecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccc
Q psy17620        602 TRHSTMI-VGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVL  653 (741)
Q Consensus       602 ~r~gv~l-vGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~  653 (741)
                      ...|++| +||||+|||.+.+.|+..+..   .     .++-+++..++++.|
T Consensus       121 ~~~g~~l~~G~pG~GKT~la~ala~~~~~---~-----~~~~~~~~~~~~~~~  165 (321)
T d1w44a_         121 YASGMVIVTGKGNSGKTPLVHALGEALGG---K-----DKYATVRFGEPLSGY  165 (321)
T ss_dssp             EESEEEEEECSSSSCHHHHHHHHHHHHHT---T-----SCCEEEEBSCSSTTC
T ss_pred             cCCceEEEECCCCccHHHHHHHHHHHhcC---C-----CCeEEEEhhHhhhcc
Confidence            3457665 799999999999999998742   1     123345566777655

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.0034  Score=58.94  Aligned_cols=25  Identities=32%  Similarity=0.601  Sum_probs=22.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+|+|+|||||||||+.+.|++-..
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            4689999999999999999988753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.31  E-value=0.0062  Score=58.84  Aligned_cols=38  Identities=21%  Similarity=0.248  Sum_probs=25.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN  640 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~in  640 (741)
                      -+.|++|||+|+||||.+--|+..+...|.++-....+
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~D   49 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGAD   49 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEee
Confidence            45688999999999999988888777666665554444

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.26  E-value=0.0038  Score=58.87  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|+|.|||||||||+.+.|++.++
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.25  E-value=0.0065  Score=56.09  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=27.1

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEE
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYT  638 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~  638 (741)
                      |-|.||+||||||+.+.|++.+...+..+....
T Consensus        25 IgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~   57 (198)
T d1rz3a_          25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFH   57 (198)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhccccccceecc
Confidence            559999999999999999999887666554443

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0044  Score=58.00  Aligned_cols=25  Identities=24%  Similarity=0.550  Sum_probs=22.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +..|+|+||||+||||+.+.|.+..
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhC
Confidence            5689999999999999999988754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.0041  Score=58.64  Aligned_cols=24  Identities=29%  Similarity=0.700  Sum_probs=21.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      +|+|+|||||||||+.+.|++-..
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            589999999999999999988754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.0072  Score=58.38  Aligned_cols=36  Identities=22%  Similarity=0.258  Sum_probs=27.6

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEe
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL  639 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~i  639 (741)
                      +.+++|||+|+||||.+--|+..+...|.++-....
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~   45 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG   45 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence            568899999999999999998877665555444333

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0076  Score=57.48  Aligned_cols=52  Identities=17%  Similarity=0.329  Sum_probs=39.7

Q ss_pred             HHHHHHHhh--ccceEEEEecCCCChhHHHHHHHHHhccCC-----CCeEEEEeCCCcc
Q psy17620        593 VVQMYETML--TRHSTMIVGPTGGGKSVVINALVKTSTVLG-----YPARTYTLNPKAV  644 (741)
Q Consensus       593 v~qL~e~l~--~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~-----~~~~~~~inpka~  644 (741)
                      +.++.+.+.  .+..++||||||+|||++++.|+..+..-.     ...+++.+++.++
T Consensus        31 i~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~L   89 (195)
T d1jbka_          31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL   89 (195)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH
T ss_pred             HHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHH
Confidence            778888886  456999999999999999999998765321     1345676766664

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.004  Score=60.39  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=22.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .+.++++||||+|||++++.+++.+
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhh
Confidence            4468999999999999999999986

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.11  E-value=0.008  Score=57.88  Aligned_cols=39  Identities=23%  Similarity=0.263  Sum_probs=29.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP  641 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp  641 (741)
                      ...++++||+|+||||.+--|+..+...|.++-....+.
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt   44 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT   44 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            346789999999999998888887766666655555543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.09  E-value=0.0096  Score=57.34  Aligned_cols=30  Identities=27%  Similarity=0.468  Sum_probs=25.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      .+++|+||+|||||.+.++++..+...+..
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~   66 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYR   66 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhccCccc
Confidence            459999999999999999999887655443

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.05  E-value=0.0095  Score=57.57  Aligned_cols=39  Identities=23%  Similarity=0.238  Sum_probs=29.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP  641 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp  641 (741)
                      -+.+++|||+|+||||.+--|+..+..-|.++-....+.
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt   49 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT   49 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecc
Confidence            356899999999999999888887765565555444443

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.02  E-value=0.0039  Score=58.07  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=20.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHh
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .-|+++|+|||||||+.+.|+...
T Consensus        15 ~liil~G~pGsGKST~a~~l~~~~   38 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLVSA   38 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhc
Confidence            468999999999999998876543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.99  E-value=0.0059  Score=65.49  Aligned_cols=44  Identities=23%  Similarity=0.428  Sum_probs=30.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYG  651 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG  651 (741)
                      ..+|+|+||||||||.+.++||+.++     +-....+--.+|-.-+.|
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~-----VPFv~~daT~fTeaGYvG   92 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVGYVG   92 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGGC----CC
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeecceeeecceee
Confidence            56899999999999999999999863     334555555555433333

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.94  E-value=0.0053  Score=57.05  Aligned_cols=25  Identities=28%  Similarity=0.488  Sum_probs=21.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-|+|+|||||||||+.+.|.+-..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4588999999999999999987754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.93  E-value=0.011  Score=60.73  Aligned_cols=50  Identities=26%  Similarity=0.283  Sum_probs=41.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc-cccccccc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-SVIELYGV  652 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~-t~~eLyG~  652 (741)
                      -+-|-|.||||+||||++..|..++...|.++-+..++|.+- +-..++|.
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgd  101 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGD  101 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCC
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccc
Confidence            345889999999999999999999888888999999999874 33556655

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.90  E-value=0.0096  Score=56.94  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=26.3

Q ss_pred             HHHHHHhhccc--eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        594 VQMYETMLTRH--STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       594 ~qL~e~l~~r~--gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+|...+....  .++++||||+|||++.+.+++.+.
T Consensus        24 ~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          24 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhh
Confidence            34444443322  489999999999999999998764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=94.84  E-value=0.01  Score=57.10  Aligned_cols=37  Identities=22%  Similarity=0.192  Sum_probs=28.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEe
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL  639 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~i  639 (741)
                      +..++++||+|+||||.+--|+..+...|.++-....
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~   46 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA   46 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence            4557889999999999999999887766665544433

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.74  E-value=0.01  Score=56.84  Aligned_cols=24  Identities=38%  Similarity=0.535  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+++.||||+|||++++.+++.+.
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHHc
Confidence            489999999999999999998753

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.72  E-value=0.0046  Score=60.32  Aligned_cols=24  Identities=25%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             EEEEecCCCChhHHHHHHHHHhcc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      ++++||||+|||++++.+++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHHHh
Confidence            456799999999999999998753

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.48  E-value=0.0076  Score=54.81  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=26.6

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHH
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      +++++..-+...-|+|+|++|+||||+++.|..
T Consensus         3 ~~~~~~~~~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_           3 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             hHHhccccCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            345566666677899999999999999998854

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.42  E-value=0.011  Score=61.74  Aligned_cols=90  Identities=13%  Similarity=0.275  Sum_probs=50.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCe
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK  684 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~  684 (741)
                      .++++||||+|||.+.|.|++.+.     .....++-..++...+.|+-       .+|.++.++........  .....
T Consensus        70 niLfiGPTGvGKTElAk~LA~~~~-----~~~ir~D~s~~~e~gyvg~d-------v~~~i~~l~~~~~~~v~--~~~~~  135 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKHLD-----IPIAISDATSLTEAGYVGED-------VENILTRLLQASDWNVQ--KAQKG  135 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGCC---------------CTHHHHHHHHHTTTCHH--HHTTS
T ss_pred             ceeeeCCCCccHHHHHHHHHhhcc-----cceeehhhhhcccchhhHhh-------hccchhhhhhhchhHHH--Hhhcc
Confidence            589999999999999999998863     23444554555554444442       35677777665422110  12335


Q ss_pred             EEEEcCC----------------CChhhhhhccccccCCc
Q psy17620        685 YILFDGD----------------VDALWIENMNSVMDDNK  708 (741)
Q Consensus       685 WIVfDG~----------------vd~~wiE~LNsvLDdnk  708 (741)
                      .++||--                ..+..-+.|-.+||+..
T Consensus       136 iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~~  175 (364)
T d1um8a_         136 IVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSL  175 (364)
T ss_dssp             EEEEETGGGC--------------CHHHHHHHHHHHHCCE
T ss_pred             cchhhhhhhhccccccccccccccchHHHHhhhhhhcCce
Confidence            6677721                33445555666777653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=94.34  E-value=0.018  Score=54.96  Aligned_cols=38  Identities=18%  Similarity=0.315  Sum_probs=26.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      -|+++|++||||||+++.|.+.+.. +..+-+...+|.+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~-~~~~~ivn~d~~~   39 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLED-NYKVAYVNLDTGV   39 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTT-TSCEEEEECCSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh-CCeEEEEecCccc
Confidence            4789999999999999999887643 3333333334443

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.26  E-value=0.01  Score=52.72  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=19.2

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+|+|+||+||||+++.|...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999998764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.25  E-value=0.0071  Score=59.62  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=22.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+||||||++++|...+.
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            44678999999999999999988764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.011  Score=55.62  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.1

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |.|.|||||||||.-+.|++.++
T Consensus         6 I~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            44559999999999999999875

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.021  Score=54.06  Aligned_cols=39  Identities=31%  Similarity=0.452  Sum_probs=31.4

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV  644 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~  644 (741)
                      |.+.|+.||||||.++.|++.+...|.++....-.|..-
T Consensus         5 IviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~   43 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGT   43 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCc
Confidence            567799999999999999999988887766555566443

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.011  Score=56.46  Aligned_cols=23  Identities=43%  Similarity=0.709  Sum_probs=20.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      -++|+||||+||||+.+.|.+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.03  E-value=0.022  Score=54.94  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=25.5

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      +.+|.+.  ..+.|+|+||+|+|||++++.+++..
T Consensus        21 l~~l~~~--~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          21 IEKLKGL--RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             HHHHHHT--CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhc--cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            4445442  45688899999999999999887765

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.00  E-value=0.02  Score=53.69  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=27.8

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccCCCCeEEE
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTY  637 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~  637 (741)
                      |.+.|+.||||||+++.|++.+...|.++.+.
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~   34 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL   34 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            67889999999999999999998878776543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.0077  Score=59.36  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=22.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-|.|+||+||||||++++|...+.
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            45688999999999999999988764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.86  E-value=0.014  Score=55.35  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |.|-|||||||||..+.|++.++
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            44669999999999999999875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.79  E-value=0.0049  Score=61.23  Aligned_cols=26  Identities=23%  Similarity=0.465  Sum_probs=22.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++|..-+.
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccC
Confidence            45788999999999999999987664

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.65  E-value=0.016  Score=60.31  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=24.5

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+.+++++||||+|||++.+.|++.++
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            356999999999999999999999975

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.59  E-value=0.02  Score=55.57  Aligned_cols=35  Identities=20%  Similarity=0.328  Sum_probs=27.5

Q ss_pred             HHHHHHhhc---cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        594 VQMYETMLT---RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       594 ~qL~e~l~~---r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+|...+..   .|+++++||||+|||++++.+++.+.
T Consensus        22 ~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          22 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             HHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            345554443   46799999999999999999998864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.02  Score=54.15  Aligned_cols=24  Identities=29%  Similarity=0.289  Sum_probs=21.4

Q ss_pred             EEEEecCCCChhHHHHHHHHHhcc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      |.|.||+||||||+.+.|++.++.
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhch
Confidence            568899999999999999998764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.27  E-value=0.054  Score=49.04  Aligned_cols=22  Identities=45%  Similarity=0.659  Sum_probs=19.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .|.|+|+||+||||+++.|...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.26  E-value=0.015  Score=56.84  Aligned_cols=26  Identities=31%  Similarity=0.500  Sum_probs=21.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+-|+||+||||||++++++....
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCcchhhHhccCCCC
Confidence            34578999999999999999887653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.018  Score=56.33  Aligned_cols=26  Identities=31%  Similarity=0.543  Sum_probs=22.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++++..+.
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCC
Confidence            34678999999999999999987653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.21  E-value=0.02  Score=50.95  Aligned_cols=21  Identities=29%  Similarity=0.545  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|+||+||||+++.+...
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999988754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.13  E-value=0.021  Score=50.32  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=19.2

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+|+|+||+||||+++.|...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998874

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.12  E-value=0.053  Score=56.94  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=30.8

Q ss_pred             HHHHHHHhhccce-EEEEecCCCChhHHHHHHHHHhccCC
Q psy17620        593 VVQMYETMLTRHS-TMIVGPTGGGKSVVINALVKTSTVLG  631 (741)
Q Consensus       593 v~qL~e~l~~r~g-v~lvGp~gsGKTt~~~~L~~a~~~~~  631 (741)
                      +.++.+++...+| |++.||+||||||.+..+...+...+
T Consensus       147 ~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~  186 (401)
T d1p9ra_         147 HDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSE  186 (401)
T ss_dssp             HHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHhhhhceEEEEcCCCCCccHHHHHHhhhhcCCC
Confidence            5566677777776 56889999999999999998876543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.069  Score=55.25  Aligned_cols=29  Identities=31%  Similarity=0.495  Sum_probs=22.7

Q ss_pred             hhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        600 MLTRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.-++|.||||||||+++..+..++.
T Consensus       160 al~~~~~vI~G~pGTGKTt~i~~~l~~l~  188 (359)
T d1w36d1         160 ALTRRISVISGGPGTGKTTTVAKLLAALI  188 (359)
T ss_dssp             HHTBSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred             HHcCCeEEEEcCCCCCceehHHHHHHHHH
Confidence            33577889999999999999876655543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.09  E-value=0.023  Score=53.04  Aligned_cols=24  Identities=29%  Similarity=0.583  Sum_probs=21.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ...|+|+|+||+||||+++.|.+.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999999865

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.99  E-value=0.083  Score=52.37  Aligned_cols=95  Identities=14%  Similarity=0.245  Sum_probs=55.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccC-CCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP-ETRDWYDGLLSNIFRAVNKPLDPGSK  681 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~-~t~eW~DGvls~i~R~~~~~~~~~~~  681 (741)
                      +.+++++||+++|||+++.++.+.+...                    |.++. .++-|-.        .        -.
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~lg~~--------------------~~~~~~~~~f~l~--------~--------l~  147 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHTVPFY--------------------GCVNWTNENFPFN--------D--------CV  147 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSCE--------------------EECCTTCSSCTTG--------G--------GS
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHhcch--------------------hhccccCCCcccc--------c--------cC
Confidence            6699999999999999999999886421                    11111 0111110        0        12


Q ss_pred             CCeEEEEcCC-CChhhhhhccccccCCceeecc--CCCeeecCCCceEEEEeCCCC
Q psy17620        682 ERKYILFDGD-VDALWIENMNSVMDDNKILTLA--NGERIRLLAHCQLLFEIHPIQ  734 (741)
Q Consensus       682 ~~~WIVfDG~-vd~~wiE~LNsvLDdnk~L~L~--nGeri~l~~~~rliFE~~~L~  734 (741)
                      +.+.+++|.+ ......|.+-++++.+. ++..  ..+.+.+.+...+|+-..|+-
T Consensus       148 ~k~~~~~~e~~~~~~~~~~~K~l~gGd~-i~v~~K~k~~~~~~~~p~li~s~n~i~  202 (267)
T d1u0ja_         148 DKMVIWWEEGKMTAKVVESAKAILGGSK-VRVDQKCKSSAQIDPTPVIVTSNTNMC  202 (267)
T ss_dssp             SCSEEEECSCCEETTTHHHHHHHHTTCC-EEC------CCEECCCCEEEEESSCTT
T ss_pred             CCEEEEEeCCCccccHHHHHHHhcCCCc-eEeecccCCCcEeeCCeEEEEeCCCcc
Confidence            3456666633 34455677777776553 3322  456666777777777766664

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.95  E-value=0.02  Score=56.12  Aligned_cols=24  Identities=33%  Similarity=0.638  Sum_probs=21.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -+.|+||+||||||++++++..+.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            456899999999999999998764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.016  Score=57.26  Aligned_cols=26  Identities=38%  Similarity=0.530  Sum_probs=22.5

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+||||||+++++...+.
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcccC
Confidence            45688999999999999999987654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.85  E-value=0.025  Score=51.70  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=19.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .|+|+|+||+||||+++.|.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.83  E-value=0.022  Score=55.94  Aligned_cols=26  Identities=19%  Similarity=0.484  Sum_probs=22.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+-|+||+||||||++++++..+.
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCC
Confidence            34678999999999999999988754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.81  E-value=0.017  Score=55.06  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=22.1

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+||||||++++++..+.
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccc
Confidence            34577999999999999999988664

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.77  E-value=0.02  Score=56.22  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-+-|+||+||||||++++++....
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCcc
Confidence            3578999999999999999987653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.73  E-value=0.05  Score=48.39  Aligned_cols=79  Identities=18%  Similarity=0.302  Sum_probs=43.3

Q ss_pred             EEEEecCCCChhHHHHHHHHHhccC-----C----CCeEEEEeCCCccccccccccccCCCCC-cccChHHHHHHHhcCC
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTVL-----G----YPARTYTLNPKAVSVIELYGVLNPETRD-WYDGLLSNIFRAVNKP  675 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~~-----~----~~~~~~~inpka~t~~eLyG~~d~~t~e-W~DGvls~i~R~~~~~  675 (741)
                      |.|+|+|++||||+++.|...-...     +    ........+...+...+.-|...+..+. +..++ ...++.+.. 
T Consensus         3 I~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~-~~~~~~~~~-   80 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGI-ERTLQEIEK-   80 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCH-HHHHHHHHH-
T ss_pred             EEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHH-HHHHHHHHh-
Confidence            7899999999999999998753211     1    1122334444455555666655443322 33332 344443321 


Q ss_pred             CCCCCCCCeEEEEcCC
Q psy17620        676 LDPGSKERKYILFDGD  691 (741)
Q Consensus       676 ~~~~~~~~~WIVfDG~  691 (741)
                           .+--.+|+|..
T Consensus        81 -----ad~ii~v~d~~   91 (160)
T d1xzpa2          81 -----ADIVLFVLDAS   91 (160)
T ss_dssp             -----CSEEEEEEETT
T ss_pred             -----CCEEEEEEeCC
Confidence                 13356677743

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.60  E-value=0.022  Score=57.14  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-+.|+||+||||||++++++..+.
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCCc
Confidence            44678999999999999999987764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.53  E-value=0.017  Score=56.39  Aligned_cols=25  Identities=28%  Similarity=0.569  Sum_probs=22.0

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+.|+||+||||||++++++..+.
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcC
Confidence            3588999999999999999998764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.51  E-value=0.025  Score=55.39  Aligned_cols=25  Identities=20%  Similarity=0.496  Sum_probs=21.9

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+-|+||+||||||+++++...+.
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC
Confidence            3578999999999999999998764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=92.49  E-value=0.062  Score=54.45  Aligned_cols=73  Identities=15%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             CcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHHhhccee-ee
Q psy17620        422 GAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRP-VV  500 (741)
Q Consensus       422 GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRp-va  500 (741)
                      |.-+|+||+|+++.++++.+       ..++..+.-++.-.|..+.+.-.|.+.+|+||..   .+||+.+...|.- +.
T Consensus       128 ~gvl~iDEi~~~~~~~~~aL-------l~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~---~~l~~~llDRf~~~i~  197 (333)
T d1g8pa_         128 RGYLYIDECNLLEDHIVDLL-------LDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE---GDLRPQLLDRFGLSVE  197 (333)
T ss_dssp             TEEEEETTGGGSCHHHHHHH-------HHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS---CCCCHHHHTTCSEEEE
T ss_pred             ccEeecccHHHHHHHHHHHH-------hhhhcCCeEEecccCceecCCCCEEEEEecCccc---cccccchhhhhcceee
Confidence            55789999999999998876       4555555444444688889999999999999964   3699999999963 45


Q ss_pred             ccCC
Q psy17620        501 CIVP  504 (741)
Q Consensus       501 m~~P  504 (741)
                      |..|
T Consensus       198 v~~~  201 (333)
T d1g8pa_         198 VLSP  201 (333)
T ss_dssp             CCCC
T ss_pred             ccCc
Confidence            5444

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.41  E-value=0.043  Score=53.23  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=27.1

Q ss_pred             HHHHHHHhhccceEEEEecCCCChhHHHHHHHHH
Q psy17620        593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      +..|.+.+ ..+..+++|+||.||||+++.|...
T Consensus        86 ~~~L~~~l-~~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          86 IEELKEYL-KGKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             HHHHHHHH-SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             HhhHHHHh-cCCeEEEECCCCCCHHHHHHhhcch
Confidence            66677766 4678889999999999999998653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=92.41  E-value=0.027  Score=52.32  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.2

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      -|.|+|+||+||||+++.|.+
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            489999999999999999974

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=92.34  E-value=0.027  Score=50.65  Aligned_cols=20  Identities=15%  Similarity=0.456  Sum_probs=18.3

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+++|++|+||||+++.|..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            78999999999999998854

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=92.19  E-value=0.033  Score=49.74  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=19.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+++|+|++||||+++.|.+.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.15  E-value=0.035  Score=52.08  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=20.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .|+|+|++|+||||+++.|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999874

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.15  E-value=0.033  Score=50.40  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=20.8

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .+-|+|+|.+|+||||+++.|...
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            367999999999999999988653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.05  E-value=0.053  Score=55.00  Aligned_cols=26  Identities=23%  Similarity=0.176  Sum_probs=23.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccC
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVL  630 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~  630 (741)
                      -|.|.|++||||||+.+.|+..++..
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~  107 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRW  107 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHhhh
Confidence            56799999999999999999998765

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.98  E-value=0.036  Score=50.34  Aligned_cols=21  Identities=19%  Similarity=0.378  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|++|+||||+++.|...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            899999999999999998754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=91.82  E-value=0.042  Score=52.37  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=21.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .|.+.|.|||||||+.+.|++.+.
T Consensus        26 vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          26 TIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999998764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.79  E-value=0.022  Score=52.99  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=21.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -|.+.|+.||||||+++.|++.+.
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            477999999999999999998764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.77  E-value=0.037  Score=55.68  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=22.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPAR  635 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~  635 (741)
                      -|-|.|+|||||||+.+.|.+.+...+.++.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~   36 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAV   36 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeE
Confidence            4569999999999999999999877655433

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.67  E-value=0.041  Score=49.61  Aligned_cols=20  Identities=35%  Similarity=0.488  Sum_probs=18.3

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+|+|++|+||||+++.+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998775

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.59  E-value=0.018  Score=57.09  Aligned_cols=27  Identities=33%  Similarity=0.539  Sum_probs=22.6

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...-+.|+||+||||||++++|...+.
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            345788999999999999999887654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.51  E-value=0.021  Score=56.15  Aligned_cols=26  Identities=23%  Similarity=0.469  Sum_probs=22.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+.|+||+||||||++++++....
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCcC
Confidence            34678999999999999999998653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.50  E-value=0.045  Score=49.31  Aligned_cols=21  Identities=29%  Similarity=0.623  Sum_probs=18.9

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|++|+||||+++.+..-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.043  Score=49.96  Aligned_cols=21  Identities=33%  Similarity=0.563  Sum_probs=18.6

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|++|+|||++++.+..-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999987653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.041  Score=50.65  Aligned_cols=20  Identities=20%  Similarity=0.433  Sum_probs=18.2

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+|+|++|+||||+++.|..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            88999999999999998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.051  Score=49.30  Aligned_cols=22  Identities=18%  Similarity=0.530  Sum_probs=19.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+|+|++|+|||++++.+..-
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999998753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.052  Score=49.20  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      -=|+|+|++|+|||++++.+..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999998865

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.99  E-value=0.052  Score=49.20  Aligned_cols=20  Identities=30%  Similarity=0.640  Sum_probs=18.3

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+|+|++|+||||+++.+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998865

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=90.98  E-value=0.053  Score=48.82  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=18.6

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|++|+||||+++.+...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            788999999999999998653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.95  E-value=0.045  Score=50.05  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=19.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|.|+|.+|+||||+++.|.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=90.95  E-value=0.055  Score=49.98  Aligned_cols=20  Identities=40%  Similarity=0.454  Sum_probs=17.0

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |-|+|++||||||+.+.|.+
T Consensus         6 IgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            34789999999999998854

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.052  Score=49.47  Aligned_cols=21  Identities=24%  Similarity=0.599  Sum_probs=18.8

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      -|+++|++|+||||+++.+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998865

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.88  E-value=0.054  Score=48.82  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+|+|++|+|||++++.+..-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=90.85  E-value=0.051  Score=49.23  Aligned_cols=20  Identities=20%  Similarity=0.541  Sum_probs=18.0

Q ss_pred             eEEEEecCCCChhHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALV  624 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~  624 (741)
                      -|+++|++|+||||+++.+.
T Consensus        18 kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999998774

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.78  E-value=0.056  Score=48.98  Aligned_cols=20  Identities=30%  Similarity=0.498  Sum_probs=18.5

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+|+|++|+|||++++.+..
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998876

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.77  E-value=0.043  Score=54.32  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=21.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+-|+||+||||||+.++++....
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCcc
Confidence            34577999999999999999987653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.059  Score=48.57  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=18.9

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      -|+|+|++|+|||++++.|..
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999998875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.06  Score=48.52  Aligned_cols=21  Identities=29%  Similarity=0.332  Sum_probs=18.8

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      =|+|+|++|+|||++++.|..
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.60  E-value=0.06  Score=48.54  Aligned_cols=21  Identities=29%  Similarity=0.591  Sum_probs=18.8

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+|+|++|+|||++++.+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.57  E-value=0.063  Score=48.88  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=18.9

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      =|+|+|++|+|||++++.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998775

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=90.54  E-value=0.041  Score=53.46  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=21.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHh
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ..-+.|+||+||||||++++++...
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3457899999999999999998743

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.066  Score=48.78  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=20.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+=|+|+|++|+|||++++.+..-
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhC
Confidence            556899999999999999887754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.48  E-value=0.063  Score=48.43  Aligned_cols=20  Identities=15%  Similarity=0.313  Sum_probs=18.4

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+|+|.+|+|||++++.+..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.40  E-value=0.064  Score=48.07  Aligned_cols=21  Identities=14%  Similarity=0.376  Sum_probs=18.9

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+|+|++|+|||++++.+..-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.38  E-value=0.064  Score=48.75  Aligned_cols=20  Identities=35%  Similarity=0.620  Sum_probs=18.3

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+|+|++|+||||+++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999988765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.063  Score=48.51  Aligned_cols=20  Identities=35%  Similarity=0.542  Sum_probs=18.0

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+|+|++|+||||+++.+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999988764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.067  Score=48.40  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=19.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      =|+++|++|+|||++++.|..-
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.13  E-value=0.073  Score=47.69  Aligned_cols=20  Identities=20%  Similarity=0.398  Sum_probs=18.4

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+++|.+|+|||++++.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=0.072  Score=48.29  Aligned_cols=20  Identities=25%  Similarity=0.708  Sum_probs=18.4

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+|+|++|+|||++++.+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.03  E-value=0.07  Score=48.93  Aligned_cols=22  Identities=18%  Similarity=0.373  Sum_probs=19.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+|+|.+|+|||++++.+..-
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999988753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.99  E-value=0.063  Score=48.57  Aligned_cols=21  Identities=38%  Similarity=0.536  Sum_probs=19.0

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |.|+|.||+||||+++.|.++
T Consensus         8 I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999999764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.96  E-value=0.074  Score=49.38  Aligned_cols=21  Identities=24%  Similarity=0.517  Sum_probs=18.9

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      -|+|+|++|+||||+++.+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            388999999999999998875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.95  E-value=0.072  Score=48.84  Aligned_cols=20  Identities=35%  Similarity=0.690  Sum_probs=18.5

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+|+|.+|+||||+++.+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=89.94  E-value=0.056  Score=52.83  Aligned_cols=26  Identities=19%  Similarity=0.449  Sum_probs=22.2

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ...+-|+||+||||||+++++...+.
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            34577999999999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=89.77  E-value=0.057  Score=49.04  Aligned_cols=20  Identities=20%  Similarity=0.489  Sum_probs=18.1

Q ss_pred             eEEEEecCCCChhHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALV  624 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~  624 (741)
                      -|+++|++|+||||+++.+.
T Consensus        14 kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            48999999999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=89.75  E-value=0.057  Score=49.40  Aligned_cols=20  Identities=30%  Similarity=0.615  Sum_probs=18.0

Q ss_pred             eEEEEecCCCChhHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALV  624 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~  624 (741)
                      -|+++|++|+||||+++.+.
T Consensus        19 KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999998764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.60  E-value=0.067  Score=52.50  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=21.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .-.|+|+|.||+||||++++|.+.
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCC
Confidence            347999999999999999998753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.083  Score=48.14  Aligned_cols=21  Identities=29%  Similarity=0.551  Sum_probs=19.0

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+|+|++|+|||++++.+...
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999988753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.41  E-value=0.059  Score=49.36  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=18.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|-|+|+|++||||+++.|.++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999987544

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.36  E-value=0.081  Score=47.83  Aligned_cols=20  Identities=25%  Similarity=0.466  Sum_probs=18.1

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+|+|++|+|||++++.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78999999999999998764

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=89.32  E-value=0.086  Score=45.12  Aligned_cols=48  Identities=21%  Similarity=0.238  Sum_probs=28.1

Q ss_pred             HhhccceEEEEecCCCChhHHH-HHHHHHhccCCCCeEEEEeCCCcccccc
Q psy17620        599 TMLTRHSTMIVGPTGGGKSVVI-NALVKTSTVLGYPARTYTLNPKAVSVIE  648 (741)
Q Consensus       599 ~l~~r~gv~lvGp~gsGKTt~~-~~L~~a~~~~~~~~~~~~inpka~t~~e  648 (741)
                      ++...+.++|++|||||||.+. ..+.......  ...+.++.|...-.++
T Consensus         3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~--~~~vli~~p~~~l~~q   51 (140)
T d1yksa1           3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSE   51 (140)
T ss_dssp             TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHH
T ss_pred             HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhhc--CceeeeeecchhHHHH
Confidence            4566788999999999999554 3333332222  2344445555444433

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=89.32  E-value=0.067  Score=52.21  Aligned_cols=25  Identities=20%  Similarity=0.442  Sum_probs=21.4

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .-+-|+||+||||||++++|+..+.
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3456999999999999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=89.23  E-value=0.089  Score=47.61  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.2

Q ss_pred             ceEEEEecCCCChhHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      |=|+|+|++|+|||++++.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3588999999999999998864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.19  E-value=0.093  Score=48.29  Aligned_cols=20  Identities=20%  Similarity=0.423  Sum_probs=18.3

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+|+|++|+|||++++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999998765

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.09  E-value=0.092  Score=47.33  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=18.5

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+++|++|+|||++++.+..-
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.041  Score=52.42  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=22.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhcc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      -|.+.|+.||||||+++.|++.+..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4789999999999999999998753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.06  E-value=0.057  Score=49.10  Aligned_cols=20  Identities=25%  Similarity=0.569  Sum_probs=8.6

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+++|.+|+||||+++.|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=0.094  Score=47.36  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+++|++|+|||++++.+...
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999987653

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.00  E-value=0.14  Score=49.96  Aligned_cols=47  Identities=17%  Similarity=0.188  Sum_probs=40.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV  652 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~  652 (741)
                      -+++.|.-|+||||+--.|+.++.+.|.++-....+|. -+...++|.
T Consensus        10 ~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~-~~l~~~lg~   56 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNVGQVFSQ   56 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CCHHHHTTS
T ss_pred             EEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC-CCHHHHhCC
Confidence            57889999999999999999999999999999999995 466667764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=88.99  E-value=0.053  Score=48.98  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=18.5

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      -|.|+|+|++||||+++.|..
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999988744

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.87  E-value=0.098  Score=47.08  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=18.7

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      -|+|+|.+|+|||++++-|..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998865

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=88.85  E-value=0.092  Score=47.87  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=19.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|.++|.+|+||||+++.|...
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4889999999999999998754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.81  E-value=0.1  Score=47.02  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      =|+|+|.+|+|||++++.+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999988754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.76  E-value=0.077  Score=52.22  Aligned_cols=25  Identities=40%  Similarity=0.703  Sum_probs=21.8

Q ss_pred             ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..+-|+||+||||||+++++...+.
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCCc
Confidence            3578999999999999999998764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=88.75  E-value=0.2  Score=47.53  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=26.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEE
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY  637 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~  637 (741)
                      ....++|.||||||||++...++......+.++.+.
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~i   60 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACANKERAILF   60 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcccccee
Confidence            466789999999999999877776654444444333

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=88.71  E-value=0.1  Score=49.29  Aligned_cols=21  Identities=38%  Similarity=0.558  Sum_probs=18.1

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      -|.|+|++||||||+.+.|.+
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            356999999999999998864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.1  Score=48.11  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=18.6

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+|+|++|+|||++++.+..-
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999887753

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.62  E-value=0.098  Score=47.51  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      =|+|+|++|+|||++++.+...
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999987643

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=88.53  E-value=0.14  Score=53.25  Aligned_cols=39  Identities=36%  Similarity=0.626  Sum_probs=26.4

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      .+| ++++|+||||||+.++.+....-..|  ..+.+++||-
T Consensus        50 ~~H-~~I~G~tGsGKT~~l~~li~~~~~~g--~~~iiiD~kg   88 (433)
T d1e9ra_          50 PRH-LLVNGATGTGKSVLLRELAYTGLLRG--DRMVIVDPNG   88 (433)
T ss_dssp             GGC-EEEEECTTSSHHHHHHHHHHHHHHTT--CEEEEEEETT
T ss_pred             cce-EEEEeCCCCcHHHHHHHHHHHHHhCC--CCEEEEeCCh
Confidence            444 68899999999999876665443333  3455566663

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.46  E-value=0.11  Score=47.07  Aligned_cols=20  Identities=30%  Similarity=0.481  Sum_probs=18.2

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |+|+|++|+|||++++.+..
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.36  E-value=0.11  Score=47.48  Aligned_cols=23  Identities=22%  Similarity=0.484  Sum_probs=19.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .=|+++|++|+|||++++.+..-
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            34789999999999999987653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.36  E-value=0.074  Score=48.29  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=18.3

Q ss_pred             ceEEEEecCCCChhHHHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      --|+++|++|+|||++++.+..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999987654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=0.12  Score=47.00  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=19.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..-+.|.||||||||++.-.++..
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHH
Confidence            557889999999999987776643

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=88.30  E-value=0.03  Score=50.86  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      -.+|+||.||||||++.++.-++.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            456889999999999999998864

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.29  E-value=0.071  Score=49.85  Aligned_cols=25  Identities=20%  Similarity=0.470  Sum_probs=19.6

Q ss_pred             HHHhhccceEEEEecCCCChhHHHH
Q psy17620        597 YETMLTRHSTMIVGPTGGGKSVVIN  621 (741)
Q Consensus       597 ~e~l~~r~gv~lvGp~gsGKTt~~~  621 (741)
                      .+.+..+..+++++|||||||++.-
T Consensus        34 i~~l~~~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          34 VEKVFSGKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             HHHHTTCSCEEEECSSHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEcCCCCchhHHHH
Confidence            3444567789999999999998753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=88.26  E-value=0.12  Score=48.00  Aligned_cols=24  Identities=33%  Similarity=0.418  Sum_probs=20.0

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..||++.|+||+||||+.-.|.+.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            569999999999999987666653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=88.12  E-value=0.32  Score=44.19  Aligned_cols=27  Identities=15%  Similarity=0.342  Sum_probs=23.5

Q ss_pred             cce--EEEEecCCCChhHHHHHHHHHhcc
Q psy17620        603 RHS--TMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       603 r~g--v~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      +.|  |.|.|+=|+||||..|.++++++.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            444  778999999999999999999864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.88  E-value=0.083  Score=48.13  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=18.7

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |-|+|.|++||||+++.|.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.82  E-value=0.11  Score=47.67  Aligned_cols=19  Identities=21%  Similarity=0.501  Sum_probs=17.7

Q ss_pred             EEEEecCCCChhHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALV  624 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~  624 (741)
                      |+|+|.+|+||||+++-+.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999984

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=87.71  E-value=0.11  Score=48.89  Aligned_cols=20  Identities=25%  Similarity=0.491  Sum_probs=17.1

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~  625 (741)
                      |-|.|++||||||+.+.|.+
T Consensus         5 IgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56899999999999887753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.69  E-value=0.12  Score=49.18  Aligned_cols=24  Identities=33%  Similarity=0.314  Sum_probs=21.8

Q ss_pred             EEEEecCCCChhHHHHHHHHHhcc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      |.+.|+-||||||+++.|++.+..
T Consensus         5 IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           5 LSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHhh
Confidence            678999999999999999998754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.63  E-value=0.12  Score=48.67  Aligned_cols=25  Identities=32%  Similarity=0.303  Sum_probs=20.3

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ....++|+||||||||++.-.++..
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567899999999999997766543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.51  E-value=0.12  Score=44.89  Aligned_cols=43  Identities=26%  Similarity=0.434  Sum_probs=26.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL  649 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eL  649 (741)
                      .++..+|++|+|||||+++-.+.   ...|  .++.++-|...-.++.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~---~~~~--~~vli~~P~~~l~~q~   49 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY---AAQG--YKVLVLNPSVAATLGF   49 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH---HTTT--CCEEEEESCHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH---HHcC--CcEEEEcChHHHHHHH
Confidence            46778999999999998764332   2223  3455566654433333

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.48  E-value=0.7  Score=43.16  Aligned_cols=68  Identities=13%  Similarity=0.122  Sum_probs=38.4

Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620        576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA  643 (741)
Q Consensus       576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka  643 (741)
                      +++++.+....+...-...-+-.++.-+..+++..|+|||||.++-...-.....+......++-|..
T Consensus        15 l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~   82 (208)
T d1hv8a1          15 ILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR   82 (208)
T ss_dssp             HHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccccccCcceEEEeecc
Confidence            56677776665544211111223344456899999999999998866554332222333444454443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.34  E-value=0.058  Score=52.43  Aligned_cols=32  Identities=25%  Similarity=0.427  Sum_probs=23.1

Q ss_pred             HHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .|.+.+. ....+++|+||.||||+++.|....
T Consensus        90 ~L~~~l~-~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          90 DIIPHFQ-DKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTGGGGT-TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             HHHHhhc-cceEEEECCCCccHHHHHHhhccHh
Confidence            3444443 4566789999999999999998643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=87.16  E-value=0.13  Score=47.77  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=19.6

Q ss_pred             cceEEEEecCCCChhHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      ..||++.||||+|||++.-.|.+
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            56999999999999998766654

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.12  E-value=0.27  Score=47.76  Aligned_cols=50  Identities=20%  Similarity=0.263  Sum_probs=35.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVL  653 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~  653 (741)
                      +.-|++.|.-|+||||+--.|+.++.+.|.++-+...+|.. +...++|.-
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~-~l~~~lg~~   69 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA-HLSMTLNGS   69 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-----------
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC-ChHHHhCCc
Confidence            33556779999999999999999999999999999999974 455666653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.94  E-value=0.12  Score=51.01  Aligned_cols=23  Identities=48%  Similarity=0.670  Sum_probs=20.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      -.+|+||.|||||++++++.-++
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            46899999999999999997654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=86.67  E-value=0.18  Score=46.45  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=19.7

Q ss_pred             cceEEEEecCCCChhHHHHHHHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ..||++.|+||+|||++.-.|.+.
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            569999999999999887665554

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.52  E-value=0.17  Score=46.09  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+|+|.+|+|||++++.+..-
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999998654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=86.10  E-value=0.12  Score=50.69  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=16.6

Q ss_pred             ceEEEEecCCCChhHH-HHHHHHH
Q psy17620        604 HSTMIVGPTGGGKSVV-INALVKT  626 (741)
Q Consensus       604 ~gv~lvGp~gsGKTt~-~~~L~~a  626 (741)
                      ..++|.|+||||||++ +..++..
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~l   38 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAHL   38 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHHHH
Confidence            4588999999999976 3443333

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.86  E-value=0.42  Score=46.21  Aligned_cols=47  Identities=30%  Similarity=0.308  Sum_probs=39.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYG  651 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG  651 (741)
                      .|.+.|.-|+||||+.-.|+.++...|.+|-....+|.+-+...+.|
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~~~t~~ll~   49 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLG   49 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCchhhhhC
Confidence            45678999999999999999999999999999999997655444444

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.73  E-value=0.21  Score=47.35  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=21.7

Q ss_pred             EEEEecCCCChhHHHHHHHHHhcc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTSTV  629 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~~  629 (741)
                      |.+.|+-||||||.++.|++.+..
T Consensus         6 I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHh
Confidence            678999999999999999998753

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=85.48  E-value=0.15  Score=50.55  Aligned_cols=18  Identities=28%  Similarity=0.529  Sum_probs=14.9

Q ss_pred             cceEEEEecCCCChhHHH
Q psy17620        603 RHSTMIVGPTGGGKSVVI  620 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~  620 (741)
                      .-.++|.|+||||||+++
T Consensus        24 ~g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SSCEEEEECTTSCHHHHH
T ss_pred             CCCEEEEecCCccHHHHH
Confidence            346889999999999864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=85.22  E-value=0.18  Score=47.72  Aligned_cols=27  Identities=19%  Similarity=0.330  Sum_probs=24.2

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      .+.+++++|||++|||+....|.+.+.
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHhC
Confidence            367999999999999999999998873

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.17  E-value=0.28  Score=45.99  Aligned_cols=86  Identities=16%  Similarity=0.220  Sum_probs=52.7

Q ss_pred             ccceEEEEecCCCChhHHHHHHHHHhccCC-CCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCC
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVKTSTVLG-YPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS  680 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~-~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~  680 (741)
                      .-+.+++.||+|+|||++.+.|++...... .+..+..++|..-+    +| +|.         +-.+.+.++..  +..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~----I~-Id~---------IR~i~~~~~~~--~~~   77 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGEN----IG-IDD---------IRTIKDFLNYS--PEL   77 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSC----BC-HHH---------HHHHHHHHTSC--CSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCC----CC-HHH---------HHHHHHHHhhC--ccc
Confidence            356899999999999999999998775442 23456777764211    11 111         23344444332  123


Q ss_pred             CCCeEEEEcCCCChhhhhhccccc
Q psy17620        681 KERKYILFDGDVDALWIENMNSVM  704 (741)
Q Consensus       681 ~~~~WIVfDG~vd~~wiE~LNsvL  704 (741)
                      ...|.+|+|. +|..=.+.-|.+|
T Consensus        78 ~~~KviIId~-ad~l~~~aqNaLL  100 (198)
T d2gnoa2          78 YTRKYVIVHD-CERMTQQAANAFL  100 (198)
T ss_dssp             SSSEEEEETT-GGGBCHHHHHHTH
T ss_pred             CCCEEEEEeC-ccccchhhhhHHH
Confidence            4678999994 5555555556654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.94  E-value=0.25  Score=46.78  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=20.3

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHH
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      ...+.++|.||||||||++.-.++..
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            45678999999999999986554443

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.59  E-value=0.23  Score=44.94  Aligned_cols=21  Identities=19%  Similarity=0.457  Sum_probs=18.6

Q ss_pred             EEEEecCCCChhHHHHHHHHH
Q psy17620        606 TMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a  626 (741)
                      |+|+|..|+|||++++-+..-
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999987643

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.58  E-value=0.21  Score=47.37  Aligned_cols=24  Identities=21%  Similarity=0.490  Sum_probs=20.8

Q ss_pred             ccceEEEEecCCCChhHHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      ..+=|+|+|++|+||||+++-+..
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999998854

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=84.41  E-value=0.23  Score=47.25  Aligned_cols=23  Identities=13%  Similarity=0.255  Sum_probs=20.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHHh
Q psy17620        605 STMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      -|.|.|+.||||||+.+.|++.+
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            37799999999999999998764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.91  E-value=0.26  Score=49.16  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHHHHHHhc
Q psy17620        606 TMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      |-|.|++||||||+...|...+.
T Consensus        30 IGi~G~qGSGKSTl~~~l~~~L~   52 (286)
T d1odfa_          30 IFFSGPQGSGKSFTSIQIYNHLM   52 (286)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHHH
Confidence            34789999999999988877764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.85  E-value=0.26  Score=44.93  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      -|+++|++|+|||++++.+...
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999987654

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.64  E-value=0.43  Score=43.70  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=18.0

Q ss_pred             HHhhccceEEEEecCCCChhHHHHHHH
Q psy17620        598 ETMLTRHSTMIVGPTGGGKSVVINALV  624 (741)
Q Consensus       598 e~l~~r~gv~lvGp~gsGKTt~~~~L~  624 (741)
                      +.+..+ .+++++|||||||.+.-.++
T Consensus        19 ~~~~~~-n~lv~~pTGsGKT~i~~~~~   44 (200)
T d1wp9a1          19 AKCKET-NCLIVLPTGLGKTLIAMMIA   44 (200)
T ss_dssp             HHGGGS-CEEEECCTTSCHHHHHHHHH
T ss_pred             HHHhcC-CeEEEeCCCCcHHHHHHHHH
Confidence            334444 47788999999998655444

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=83.64  E-value=0.087  Score=51.83  Aligned_cols=30  Identities=13%  Similarity=0.165  Sum_probs=21.6

Q ss_pred             HHhhccceEEEEecCCCChhHHH--HHHHHHh
Q psy17620        598 ETMLTRHSTMIVGPTGGGKSVVI--NALVKTS  627 (741)
Q Consensus       598 e~l~~r~gv~lvGp~gsGKTt~~--~~L~~a~  627 (741)
                      +++..++.++|.+|||||||.++  ..+..+.
T Consensus         4 ~~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~   35 (305)
T d2bmfa2           4 DIFRKKRLTIMDLHPGAGKTKRYLPAIVREAI   35 (305)
T ss_dssp             SSSSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred             HHhhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            34567888999999999999643  4444443

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=83.44  E-value=0.27  Score=45.93  Aligned_cols=27  Identities=19%  Similarity=0.263  Sum_probs=22.1

Q ss_pred             hccceEEEEecCCCChhHHHHHHHHHh
Q psy17620        601 LTRHSTMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      ...+-++|+|+||+|||++.-.++...
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            346778999999999999987777654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=82.65  E-value=0.38  Score=44.27  Aligned_cols=34  Identities=29%  Similarity=0.487  Sum_probs=29.0

Q ss_pred             eEEEEec-CCCChhHHHHHHHHHhccCCCCeEEEE
Q psy17620        605 STMIVGP-TGGGKSVVINALVKTSTVLGYPARTYT  638 (741)
Q Consensus       605 gv~lvGp-~gsGKTt~~~~L~~a~~~~~~~~~~~~  638 (741)
                      -++|.|- ||+||||+.-.|+.++.+.|.+|-+..
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            4689999 599999999999999999988766543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.63  E-value=0.33  Score=45.71  Aligned_cols=24  Identities=21%  Similarity=0.178  Sum_probs=20.1

Q ss_pred             ccceEEEEecCCCChhHHHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINALVK  625 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L~~  625 (741)
                      ..+.++|.||||||||++.-.++.
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999777664

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.50  E-value=0.53  Score=44.69  Aligned_cols=41  Identities=29%  Similarity=0.392  Sum_probs=25.6

Q ss_pred             HhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620        599 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP  641 (741)
Q Consensus       599 ~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp  641 (741)
                      .+...+.+++++|||||||.+.-..+..+..-|  .++.++.|
T Consensus        54 ~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~--~rvliv~P   94 (237)
T d1gkub1          54 RILRKESFAATAPTGVGKTSFGLAMSLFLALKG--KRCYVIFP   94 (237)
T ss_dssp             HHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTS--CCEEEEES
T ss_pred             HHHCCCCEEEEecCCChHHHHHHHHHHHHHHhc--CeEEEEec
Confidence            344677899999999999987654443322222  24445555

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.46  E-value=0.28  Score=50.01  Aligned_cols=22  Identities=41%  Similarity=0.679  Sum_probs=19.4

Q ss_pred             EEEEecCCCChhHHHHHHHHHh
Q psy17620        606 TMIVGPTGGGKSVVINALVKTS  627 (741)
Q Consensus       606 v~lvGp~gsGKTt~~~~L~~a~  627 (741)
                      .+|+||.|||||+++.++.-++
T Consensus        28 ~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4799999999999999997655

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.92  E-value=0.67  Score=45.27  Aligned_cols=42  Identities=31%  Similarity=0.322  Sum_probs=36.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc
Q psy17620        605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV  646 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~  646 (741)
                      -|.+.|.-|+||||+.--|+.++...|.+|-....+|.+-+.
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~~st   45 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADST   45 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Confidence            355689999999999999999999999999999999976443

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=81.25  E-value=0.33  Score=44.20  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHH
Q psy17620        605 STMIVGPTGGGKSVVINALVKT  626 (741)
Q Consensus       605 gv~lvGp~gsGKTt~~~~L~~a  626 (741)
                      .|-++|.|++||||+++.|.+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            4889999999999999998753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=80.42  E-value=0.44  Score=44.11  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=17.7

Q ss_pred             ccceEEEEecCCCChhHHHHHH
Q psy17620        602 TRHSTMIVGPTGGGKSVVINAL  623 (741)
Q Consensus       602 ~r~gv~lvGp~gsGKTt~~~~L  623 (741)
                      ...-++|.|+||+|||++.-.+
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHH
Confidence            4556899999999999986543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=80.23  E-value=0.49  Score=45.52  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=22.4

Q ss_pred             cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620        603 RHSTMIVGPTGGGKSVVINALVKTST  628 (741)
Q Consensus       603 r~gv~lvGp~gsGKTt~~~~L~~a~~  628 (741)
                      ..-++|+|+||+|||++.-.|+.++.
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            56788999999999999988887754

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.16  E-value=0.57  Score=43.45  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=28.7

Q ss_pred             HHHHHHhccCCCc--chhhHHHHHHHhhccceEEEEecCCCChhHHHHH
Q psy17620        576 LMRALRDMNLPKF--VSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINA  622 (741)
Q Consensus       576 l~ral~~~~lPkl--~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~  622 (741)
                      ++++|.+.+.-+.  +..   +....+...+-|++..|||||||.++-.
T Consensus        12 l~~~l~~~g~~~pt~iQ~---~aip~~l~G~dvii~a~TGSGKTlayll   57 (209)
T d1q0ua_          12 IIEAIKTLRFYKPTEIQE---RIIPGALRGESMVGQSQTGTGKTHAYLL   57 (209)
T ss_dssp             HHHHHHHTTCCSCCHHHH---HHHHHHHHTCCEEEECCSSHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCHHHH---HHHHHHHCCCCeEeecccccccceeeee
Confidence            5666766554333  222   2234455677899999999999987633

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=80.13  E-value=0.74  Score=45.05  Aligned_cols=41  Identities=15%  Similarity=0.210  Sum_probs=27.9

Q ss_pred             HHHHHHHhh-----ccceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620        593 VVQMYETML-----TRHSTMIVGPTGGGKSVVINALVKTSTVLGYP  633 (741)
Q Consensus       593 v~qL~e~l~-----~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~  633 (741)
                      +..|=.+|.     ..+-+.+.||||||||++.-.++....+.|..
T Consensus        39 ~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~   84 (263)
T d1u94a1          39 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT   84 (263)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCE
Confidence            344445553     46778999999999999876666655444433