Psyllid ID: psy17628

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASRKSTKSNTSAGSRPS
Secondary Structure (PSIPRED)
cEEHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccHHccccccccccccccc
Coil and Loop (DISEMBL)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVapetpvyllSKKRRKDAEKSLLilrgpnydihGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATnskiispnygqnIVGFIQVIMTFFSSLLvdkagrrplllISDICMAICIGALGYYFYLLKLDEKLVdglgllpvASLAIYIIVFSVgfgpipgvmmgelftpdvkGLALGVICILGSLIEFVVVKtfddverafgtgvafGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVkkkkkarrtgsasrkstksntsagsrps
Flexible Loop (DISEMBL)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPEtpvyllskkrrkDAEKsllilrgpnydIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDelsgvkkkkkarrtgsasrkstksntsagsrps
Low Complexity Region (SEG)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASRKSTKSNTSAGSRPS
Disordered region (IsUnstruct)
**VSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRR*DAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP*********************************************
Disordered Region (DISOPRED)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGEL********************YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQ**********************************
Disordered Region (DISEMBL)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDEL*******************************
Disordered Region (DISPRO)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKK************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGExxxxxxxxxxxxxxxxxxxxxYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASRKSTKSNTSAGSRPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
B4QBN3	488	Facilitated trehalose tra	N/A	N/A	0.884	0.612	0.399	9e-51
B4HNS1	488	Facilitated trehalose tra	N/A	N/A	0.884	0.612	0.396	3e-50
Q8MKK4	488	Facilitated trehalose tra	no	N/A	0.884	0.612	0.389	7e-50
Q17NV8	806	Facilitated trehalose tra	N/A	N/A	0.905	0.379	0.387	3e-48
Q7PIR5	793	Facilitated trehalose tra	no	N/A	0.911	0.388	0.378	9e-48
B0WC46	517	Facilitated trehalose tra	N/A	N/A	0.920	0.601	0.370	4e-47
A9ZSY3	505	Facilitated trehalose tra	N/A	N/A	0.902	0.603	0.368	4e-47
Q291H8	868	Facilitated trehalose tra	no	N/A	0.905	0.352	0.378	5e-47
B4GAP7	869	Facilitated trehalose tra	N/A	N/A	0.905	0.352	0.378	5e-47
B3MG58	866	Facilitated trehalose tra	N/A	N/A	0.905	0.353	0.375	2e-46

>sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1

 Score =  201 bits (510), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 123/308 (39%), Positives = 175/308 (56%), Gaps = 9/308 (2%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  YV GS + +++++      +PV   L+ +I+ PETP + +++ + + A K+L  L
Sbjct: 170 GILVCYVAGS-FMNWSMLAFLGAALPV-PFLILMIIIPETPRWFVNRGQEERARKALKWL 227

Query: 65  RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           RG   D+  EL +L   Q E D QA++   L E++  +  +K   + +GL+ F  FSGIN
Sbjct: 228 RGKEADVEPELKDLMQSQAEADSQARRNTCL-ELF-KRINLKPLSISLGLMFFQQFSGIN 285

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY  +I     S I S N    IVG +    TF   LL+D+ GR+ LL ISDI M +
Sbjct: 286 AVIFYTVQIFKDAGSTIDS-NLCTIIVGIVNFFATFMGILLIDRLGRKILLYISDIAMIL 344

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY  K     V  LG LP+    IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct: 345 TLSILGGFFYC-KAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGP 403

Query: 242 ALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQ 301
           A  V+        FVV KTF D+  A G   AF  F V CI+G FFV   VPET+ KSL+
Sbjct: 404 AASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGVVCIVGLFFVIICVPETRGKSLE 463

Query: 302 QIQDELSG 309
           +I+ ++ G
Sbjct: 464 EIERKMMG 471

Fails to transport trehalose.
Drosophila simulans (taxid: 7240)

>sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1

 Score =  199 bits (506), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 175/308 (56%), Gaps = 9/308 (2%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  YV GS + +++I+      +PV   L+ +I+ PETP + +++ + + A K+L  L
Sbjct: 170 GILVCYVAGS-FMNWSILAFLGAALPV-PFLILMIIIPETPRWFVNRGQEERARKALKWL 227

Query: 65  RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           RG   D+  EL +L   Q E D QA +   L E++  +  +K   + +GL+ F  FSGIN
Sbjct: 228 RGKEADVEPELKDLMQSQAEADSQATRNTCL-ELF-KRINLKPLSISLGLMFFQQFSGIN 285

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY  +I     S I S N    IVG +    TF   +L+D+ GR+ LL +SDI M +
Sbjct: 286 AVIFYTVQIFKDAGSTIDS-NLCTIIVGIVNFFATFMGIILIDRLGRKILLYVSDIAMIL 344

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY  K     V  LG LP++   IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct: 345 TLSILGGFFYC-KAHGPDVSHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGP 403

Query: 242 ALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQ 301
           A  V+        FVV KTF D+  A G   AF  F V CI+G FFV   VPET+ KSL+
Sbjct: 404 AASVVTAFNWFCTFVVTKTFQDLTVAMGPHGAFWLFGVVCIVGLFFVIIYVPETRGKSLE 463

Query: 302 QIQDELSG 309
           +I+ ++ G
Sbjct: 464 EIERKMMG 471

Fails to transport trehalose.

Drosophila sechellia (taxid: 7238)

>sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1

 Score =  197 bits (502), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 173/308 (56%), Gaps = 9/308 (2%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  YV GS + +++++      +PV   L+ +I+ PETP + +++ + + A K+L  L
Sbjct: 170 GILVCYVAGS-FMNWSMLAFLGAALPV-PFLILMIIIPETPRWFVNRGQEERARKALKWL 227

Query: 65  RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           RG   D+  EL EL   Q + D QA +   L E++  +  +K   + +GL+ F  FSGIN
Sbjct: 228 RGKEADVEPELKELMQSQADADRQATQNTCL-ELF-KRNNLKPLSISLGLMFFQQFSGIN 285

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY  +I     S I S N    IVG +    TF   +L+D+ GR+ LL +SDI M +
Sbjct: 286 AVIFYTVQIFKDAGSTIDS-NLSTIIVGVVNFFATFMGIILIDRLGRKILLYVSDIAMIV 344

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY  K     V  LG LP+    IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct: 345 TLSILGGFFYC-KAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGP 403

Query: 242 ALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQ 301
           A  V+        FVV KTF D+  A G   AF  F   CI+G FFV   VPET+ KSL+
Sbjct: 404 AASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGLFFVIIFVPETRGKSLE 463

Query: 302 QIQDELSG 309
           +I+ ++ G
Sbjct: 464 EIERKMMG 471

Fails to transport trehalose.

Drosophila melanogaster (taxid: 7227)

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/320 (38%), Positives = 177/320 (55%), Gaps = 14/320 (4%)

Query: 5   GILYTYVIGSLYEDYTIICL--SCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLL 62
           GIL  +V G  Y D++ +    + L IP L LL+FLI  PETP + +S+ R   A K+L 
Sbjct: 487 GILLCFVAGK-YMDWSGLAFLGAALPIPFL-LLMFLI--PETPRWYVSRGRDDRARKALQ 542

Query: 63  ILRGPNYDIHGELDEL-QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
            LRG   D+  EL  + +   D +    +S +     KA +K  ++ +GL+ F   SGIN
Sbjct: 543 WLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLMKKANLKPLLISLGLMFFQQLSGIN 602

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY  +I     S  I  N    IVG +  I TF +++L+D+ GR+ LL ISD+ M I
Sbjct: 603 AVIFYTVQIFQDAGS-TIDENLCTIIVGVVNFIATFIATMLIDRLGRKMLLYISDVAMII 661

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY+ K   + V  +G LP+A+  IY++ FS+GFGPIP +MMGE+    ++G 
Sbjct: 662 TLMTLGGFFYV-KNSGQDVSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGEILPGKIRGS 720

Query: 242 ALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQ 301
           A  V         F+V KTF D+  A GT   F  F   C+IG  FV F VPET+ KSL+
Sbjct: 721 AASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVIFYVPETQGKSLE 780

Query: 302 QIQDELSGVKKKKKARRTGS 321
            I+ ++ G     + RR  S
Sbjct: 781 DIERKMMG-----RVRRMSS 795

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Aedes aegypti (taxid: 7159)

>sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3

 Score =  191 bits (484), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 122/322 (37%), Positives = 177/322 (54%), Gaps = 14/322 (4%)

Query: 5   GILYTYVIGSLYEDYTIICL--SCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLL 62
           GIL  +V G  Y D++ +    + L IP L LL+FLI  PETP + +S+ R   A K+L 
Sbjct: 474 GILLCFVAGK-YLDWSGLAFLGAALPIPFL-LLMFLI--PETPRWYVSRNREDRARKALQ 529

Query: 63  ILRGPNYDIHGELDELQK-ELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
            LRG   D+  EL  + K   D +     S +    NKA +K  ++ +GL+ F   SGIN
Sbjct: 530 WLRGRKADVEPELKGISKSHQDAERHASSSAMLDLLNKANLKPLLISLGLMFFQQLSGIN 589

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY  +I  +  S  I       IVG +  I TF +++L+D+ GR+ LL ISD+ M I
Sbjct: 590 AVIFYTVQIFQSAGS-TIDEKLCTIIVGVVNFIATFIATVLIDRLGRKILLYISDVAMII 648

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY+ K +   V  +G LP+A+  ++++ FS+GFGPIP +MMGE+    ++G 
Sbjct: 649 TLMTLGTFFYM-KNNGDDVSEIGWLPLAAFVVFVVGFSLGFGPIPWLMMGEILPGKIRGS 707

Query: 242 ALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQ 301
           A  V         FVV KTF D+  + G   AF  F   CI+G  FV   VPET+ KSL+
Sbjct: 708 AASVATAFNWSCTFVVTKTFADITASIGNHGAFWMFGSICIVGLLFVIVYVPETQGKSLE 767

Query: 302 QIQDELSGVKKKKKARRTGSAS 323
            I+ ++ G     + RR  S +
Sbjct: 768 DIERKMMG-----RVRRMSSVA 784

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Anopheles gambiae (taxid: 7165)

>sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1

 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 119/321 (37%), Positives = 174/321 (54%), Gaps = 10/321 (3%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  +V G+ Y D++ +      +PV   L+ + + PETP + +S+ R   A K+L  L
Sbjct: 198 GILLCFVAGN-YMDWSELAFLGATLPV-PFLILMFLIPETPRWYVSRGRDDRARKALQWL 255

Query: 65  RGPNYDIHGELDELQK-ELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVV 123
           RG   D+  EL  + K   D +    +S +     K  +K  ++ +GL+ F   SGIN V
Sbjct: 256 RGKKADVDPELKGIIKSHQDAERHASQSAMLDLLKKTNLKPLLISLGLMFFQQLSGINAV 315

Query: 124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI 183
           IFY  +I     S I   N    IVG +  I TF ++LL+D+ GR+ LL ISDI M I +
Sbjct: 316 IFYTVQIFQDAGSTI-DENLCTIIVGVVNFIATFIATLLIDRLGRKMLLYISDIAMIITL 374

Query: 184 GALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLAL 243
             LG +FY+ K +   V  +G LP+AS  I+++ FS+GFGPIP +MMGE+    ++G A 
Sbjct: 375 MTLGGFFYV-KNNGGDVSHIGWLPLASFVIFVLGFSLGFGPIPWLMMGEILPGKIRGSAA 433

Query: 244 GVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQI 303
            V         FVV KTF D+  + GT  AF  F   C++G  FV   VPET+ KSL+ I
Sbjct: 434 SVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGLVFVIMYVPETQGKSLEDI 493

Query: 304 QDELSGVKKKKKARRTGSASR 324
           + ++ G     + RR  S + 
Sbjct: 494 ERKMCG-----RVRRMSSVAN 509

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Culex quinquefasciatus (taxid: 7176)

>sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1

 Score =  188 bits (478), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 177/315 (56%), Gaps = 10/315 (3%)

Query: 4   SGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLI 63
           +GIL  +++GS Y D++ +      IPV    + +I+ PETP + +SK R ++A KSL  
Sbjct: 188 TGILLAFLVGS-YLDWSNLAFFGAAIPV-PFFLLMILTPETPRWYVSKARVQEARKSLRW 245

Query: 64  LRGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
           LRG N +I  E+ +L   Q E D       +  +++S K  + A ++ +GL+ F   +GI
Sbjct: 246 LRGKNVNIEKEMRDLTISQTESD--RTGGNAFKQLFS-KRYLPAVMISLGLMLFQQLTGI 302

Query: 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180
           N VIFY   I   + S +   N    I+G +  I TF +++L+D+ GR+ LL IS + M 
Sbjct: 303 NAVIFYAASIFQMSGSSV-DENLASIIIGVVNFISTFIATMLIDRLGRKVLLYISSVAMI 361

Query: 181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240
             + ALG YFYL K +   V   G LP+A L IY++ FS+GFGPIP +M+GE+    ++G
Sbjct: 362 TTLLALGAYFYL-KQNHIDVTAYGWLPLACLVIYVLGFSIGFGPIPWLMLGEILPSKIRG 420

Query: 241 LALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL 300
            A  +         F+V KTF ++  A         FAV CI G  FV F VPETK KSL
Sbjct: 421 TAASLATGFNWTCTFIVTKTFQNIIDAIYMHGTLWLFAVICIGGLLFVIFFVPETKGKSL 480

Query: 301 QQIQDELSGVKKKKK 315
           ++I+ +L+   ++ +
Sbjct: 481 EEIEMKLTSGSRRVR 495

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Bombyx mori (taxid: 7091)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score =  188 bits (477), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/320 (37%), Positives = 173/320 (54%), Gaps = 14/320 (4%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  +V G+ Y D++++      +PV   L+ + + PETP + +S+ R + A K+L  L
Sbjct: 549 GILLCFVAGT-YMDWSMLAFLGAALPV-PFLILMFLIPETPRWFVSRGREEKARKALSWL 606

Query: 65  RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           RG   D+  EL  L   Q + D QA + K +  +  N   +K   + +GL+ F   SGIN
Sbjct: 607 RGKEADVEPELKGLMRSQADADRQATQNKMMELLKRN--NLKPLSISLGLMFFQQLSGIN 664

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY   I     S  I  N    IVG +  + TF ++LL+D+AGR+ LL +S+I M I
Sbjct: 665 AVIFYTVSIFKDAGS-TIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMII 723

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY  K   + V  LG LP++   IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct: 724 TLFVLGGFFYC-KSHGQDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGS 782

Query: 242 ALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQ 301
           A  V         FVV KTF D+    G   AF  F   C IG FFV   VPET+ K+L+
Sbjct: 783 AASVATAFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLE 842

Query: 302 QIQDELSGVKKKKKARRTGS 321
            I+ ++ G     + RR  S
Sbjct: 843 DIERKMMG-----RVRRMSS 857

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2

 Score =  188 bits (477), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/320 (37%), Positives = 173/320 (54%), Gaps = 14/320 (4%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  +V G+ Y D++++      +PV   L+ + + PETP + +S+ R + A K+L  L
Sbjct: 550 GILLCFVAGT-YMDWSMLAFLGAALPV-PFLILMFLIPETPRWFVSRGREEKARKALSWL 607

Query: 65  RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           RG   D+  EL  L   Q + D QA + K +  +  N   +K   + +GL+ F   SGIN
Sbjct: 608 RGKEADVEPELKGLMRSQADADRQATQNKMMELLKRN--NLKPLSISLGLMFFQQLSGIN 665

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY   I     S  I  N    IVG +  + TF ++LL+D+AGR+ LL +S+I M I
Sbjct: 666 AVIFYTVSIFKDAGS-TIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMII 724

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY  K   + V  LG LP++   IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct: 725 TLFVLGGFFYC-KSHGQDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGS 783

Query: 242 ALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQ 301
           A  V         FVV KTF D+    G   AF  F   C IG FFV   VPET+ K+L+
Sbjct: 784 AASVATAFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLE 843

Query: 302 QIQDELSGVKKKKKARRTGS 321
            I+ ++ G     + RR  S
Sbjct: 844 DIERKMMG-----RVRRMSS 858

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila persimilis (taxid: 7234)

>sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/320 (37%), Positives = 173/320 (54%), Gaps = 14/320 (4%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  +V G+ Y D++++      +PV   LV + + PETP + +S+ R + A K+L  L
Sbjct: 547 GILLCFVAGT-YMDWSMLAFLGAALPV-PFLVLMFLIPETPRWFVSRGREERARKALSWL 604

Query: 65  RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           RG   D+  EL  L   Q + D Q   + +++E+   ++  K   + +GL+ F   SGIN
Sbjct: 605 RGKEADVEPELKGLMRSQADADRQG-TQNTMLELL-KRSNFKPLSISLGLMFFQQLSGIN 662

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY   I     S  I  N    IVG +  + TF ++LL+D+AGR+ LL +S+I M I
Sbjct: 663 AVIFYTVSIFKDAGS-TIDGNVCTIIVGVVNFLATFIATLLIDRAGRKILLYVSNIAMII 721

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY  K     V  LG LP++   IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct: 722 TLFVLGGFFYC-KAHGPDVSHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGS 780

Query: 242 ALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQ 301
           A  V         FVV KTF D+    G   AF  F   C IG FFV   VPET+ K+L+
Sbjct: 781 AASVATAFNWTCTFVVTKTFQDMIDVMGAHGAFWLFGAICFIGLFFVILYVPETQGKTLE 840

Query: 302 QIQDELSGVKKKKKARRTGS 321
            I+ ++ G     + RR  S
Sbjct: 841 DIERKMMG-----RVRRMSS 855

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila ananassae (taxid: 7217)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
328713890	522	PREDICTED: facilitated trehalose transpo	0.931	0.603	0.512	1e-81
328713900	548	PREDICTED: facilitated trehalose transpo	0.976	0.602	0.504	4e-80
193598971	585	PREDICTED: facilitated trehalose transpo	0.976	0.564	0.504	6e-80
291461567	478	sugar transporter 4 [Nilaparvata lugens]	0.902	0.638	0.469	4e-67
194752029	543	GF10864 [Drosophila ananassae] gi|190625	0.943	0.587	0.429	1e-63
195021750	541	GH14492 [Drosophila grimshawi] gi|193898	0.905	0.565	0.436	2e-62
198466442	549	GA23919 [Drosophila pseudoobscura pseudo	0.902	0.555	0.436	4e-62
195428086	552	GK17357 [Drosophila willistoni] gi|19415	0.920	0.563	0.430	9e-62
195327241	539	GM24627 [Drosophila sechellia] gi|194119	0.917	0.575	0.438	2e-61
195493950	539	GE20094 [Drosophila yakuba] gi|194180734	0.917	0.575	0.438	4e-61

>gi|328713890|ref|XP_001946479.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/324 (51%), Positives = 225/324 (69%), Gaps = 9/324 (2%)

Query: 2   VVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSL 61
           V  GILY Y IG  + +Y  + + C ++PV+  ++ L+V PE+P YL    + K+AE  L
Sbjct: 206 VTLGILYVYSIGP-FVNYAWLAIMCGILPVIWFILVLLVLPESPTYLWRSGKNKEAEDVL 264

Query: 62  LILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           ++LRG +YDI GEL  LQKEL+ + +    L ++  +KAT++A    +GL  FLS SGIN
Sbjct: 265 VMLRGKDYDISGELQALQKELE-EKKPNGKLKDMVKSKATLRAAFTALGLFGFLSCSGIN 323

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
           VVIF  + I  +T S I+SP     ++G +QVI TF SS LVD+AGRR LLLISD  MA+
Sbjct: 324 VVIFNAQTIFSSTGS-IVSPKTSSIVIGILQVIFTFTSSQLVDRAGRRVLLLISDSVMAV 382

Query: 182 CIGALGYYFYLLKLDEKLVDG--LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
           C+G+LG+YF+ L   E  VD     L+P+ SL +YI  FS+GFGPIPGVM+GELF+P+ K
Sbjct: 383 CLGSLGFYFWQL---EHGVDTSVFSLVPLISLGVYISTFSLGFGPIPGVMVGELFSPEFK 439

Query: 240 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKS 299
           GLA+G++C+L SLIEF VVK++  +   +G GV FG FA  C++GT FV F+VPETKNKS
Sbjct: 440 GLAIGIVCVLASLIEFSVVKSYQTLLDNYGRGVTFGVFAGCCVMGTLFVLFLVPETKNKS 499

Query: 300 LQQIQDELSGVKKKKKARRTGSAS 323
           LQ+IQDELSG KKK + ++  S S
Sbjct: 500 LQEIQDELSG-KKKSEQKQGPSGS 522

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713900|ref|XP_003245205.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 2 [Acyrthosiphon pisum]

 Score =  304 bits (778), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 170/337 (50%), Positives = 235/337 (69%), Gaps = 7/337 (2%)

Query: 2   VVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSL 61
           V  GILY Y IG  +  Y  + + C +IPV+  ++ L+VAPETP YLL   RR++AE SL
Sbjct: 211 VTLGILYVYAIGP-FVSYEGLAILCGIIPVIMFVLVLLVAPETPTYLLRAGRRREAEHSL 269

Query: 62  LILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           ++LRG  YDI GEL+ELQ++L+ +  +     ++ S++ATV+A+I ++GLL FLSFSGIN
Sbjct: 270 VLLRGHEYDIAGELEELQQQLEEEQNRSSKFKDLISSRATVRASIAVMGLLSFLSFSGIN 329

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
           V+IFY + I  +++S I        I+G +QV  TF S+LLVDKAGRR LLLISD  MA+
Sbjct: 330 VLIFYAESIFKSSSSSISPQVS-SIIIGVLQVKFTFASALLVDKAGRRVLLLISDSVMAV 388

Query: 182 CIGALGYYFYLLKLDEKLVD--GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
           C+G LGY+F+     E  VD     L+P+ SL +YI  FS+GFGPIPGVMMGELF+PDVK
Sbjct: 389 CLGCLGYFFWQ---SEHGVDVSAFSLIPLISLGVYISTFSLGFGPIPGVMMGELFSPDVK 445

Query: 240 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKS 299
           GLALG++C++ SL+EFVVVK + ++   F  G+ F  FA +C++GT FV+F+VPETKNK+
Sbjct: 446 GLALGIVCVIASLLEFVVVKMYQNLLDWFDHGITFWIFAGFCVLGTVFVWFLVPETKNKT 505

Query: 300 LQQIQDELSGVKKKKKARRTGSASRKSTKSNTSAGSR 336
           LQ+IQ+ELSG KK    +     S+K    ++  G +
Sbjct: 506 LQEIQNELSGKKKSNNRKDNPKGSKKHHMMDSLTGDQ 542

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193598971|ref|XP_001946430.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 3 [Acyrthosiphon pisum]

 Score =  303 bits (777), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 170/337 (50%), Positives = 235/337 (69%), Gaps = 7/337 (2%)

Query: 2   VVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSL 61
           V  GILY Y IG  +  Y  + + C +IPV+  ++ L+VAPETP YLL   RR++AE SL
Sbjct: 248 VTLGILYVYAIGP-FVSYEGLAILCGIIPVIMFVLVLLVAPETPTYLLRAGRRREAEHSL 306

Query: 62  LILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           ++LRG  YDI GEL+ELQ++L+ +  +     ++ S++ATV+A+I ++GLL FLSFSGIN
Sbjct: 307 VLLRGHEYDIAGELEELQQQLEEEQNRSSKFKDLISSRATVRASIAVMGLLSFLSFSGIN 366

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
           V+IFY + I  +++S I        I+G +QV  TF S+LLVDKAGRR LLLISD  MA+
Sbjct: 367 VLIFYAESIFKSSSSSISP-QVSSIIIGVLQVKFTFASALLVDKAGRRVLLLISDSVMAV 425

Query: 182 CIGALGYYFYLLKLDEKLVD--GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
           C+G LGY+F+     E  VD     L+P+ SL +YI  FS+GFGPIPGVMMGELF+PDVK
Sbjct: 426 CLGCLGYFFWQ---SEHGVDVSAFSLIPLISLGVYISTFSLGFGPIPGVMMGELFSPDVK 482

Query: 240 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKS 299
           GLALG++C++ SL+EFVVVK + ++   F  G+ F  FA +C++GT FV+F+VPETKNK+
Sbjct: 483 GLALGIVCVIASLLEFVVVKMYQNLLDWFDHGITFWIFAGFCVLGTVFVWFLVPETKNKT 542

Query: 300 LQQIQDELSGVKKKKKARRTGSASRKSTKSNTSAGSR 336
           LQ+IQ+ELSG KK    +     S+K    ++  G +
Sbjct: 543 LQEIQNELSGKKKSNNRKDNPKGSKKHHMMDSLTGDQ 579

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291461567|dbj|BAI83418.1| sugar transporter 4 [Nilaparvata lugens]

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 145/309 (46%), Positives = 206/309 (66%), Gaps = 4/309 (1%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
           M+  GILY YV+G+L+  Y+ + + C ++PV+ +L+F + AP++P YLL K RR DAEK+
Sbjct: 163 MLTVGILYVYVVGTLF-SYSSLQVLCGIVPVVFMLLF-VKAPDSPTYLLKKGRRHDAEKA 220

Query: 61  LLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
           L +LRGP+YDIH EL+ +Q ELD  +++K S  +    KA++K+  + +GL+ F  FSG+
Sbjct: 221 LRLLRGPSYDIHAELNNIQYELDKASRQKVSFAKAIMKKASLKSLFIALGLMLFQQFSGV 280

Query: 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180
           N VIFY   I  A  S +  P+    IVG IQVI+T+FS++LVDKAGRR LLLIS   MA
Sbjct: 281 NAVIFYSVSIFQAAGSTL-DPSICTVIVGIIQVIVTYFSAVLVDKAGRRILLLISSSVMA 339

Query: 181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240
           +C+G LGYYF+L +  E  V  +G++P+ S+ ++I+VFS+GFGPIP +M GELF+ D+KG
Sbjct: 340 LCLGCLGYYFHLQQKGED-VSNIGMIPLVSVCVFIVVFSLGFGPIPWLMTGELFSGDIKG 398

Query: 241 LALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL 300
            A  +   L     F++ KTF       G    F   A  C +GT FV+  V ETK KSL
Sbjct: 399 FASSLAVTLNWTSTFILTKTFQSFLTTIGADWTFWALASICSVGTVFVFLFVIETKGKSL 458

Query: 301 QQIQDELSG 309
           ++IQ EL+G
Sbjct: 459 EEIQCELAG 467

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194752029|ref|XP_001958325.1| GF10864 [Drosophila ananassae] gi|190625607|gb|EDV41131.1| GF10864 [Drosophila ananassae]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 141/328 (42%), Positives = 198/328 (60%), Gaps = 9/328 (2%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
           M+  GIL+ Y IG+  E +  + + C ++P++   +F  + PE+P YL++K R ++A KS
Sbjct: 222 MITIGILFVYAIGAGLEIF-WVSVVCGLLPLVFGAIFFFM-PESPTYLVAKDRSENAIKS 279

Query: 61  LLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYS---NKATVKATIVIVGLLCFLSF 117
           +  LRG +YD   EL EL +E D + ++ K  V ++S      T KA  + +GL+ F   
Sbjct: 280 IQWLRGKDYDYEPELAEL-RETDREIRENK--VNVWSALNRPVTRKALAISLGLMFFQQV 336

Query: 118 SGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI 177
            GIN VIFY  RI    N+ I    +   ++G +QV+ TF S+L+VDK GRR LLL S  
Sbjct: 337 CGINAVIFYSSRIFKEANTGI-GEQWATILIGIMQVVATFVSTLVVDKLGRRILLLASGC 395

Query: 178 CMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD 237
            MA+   A+G YFYL   D   V+ LG LPVASL I+II+FS+G+GP+P +MMGELF  D
Sbjct: 396 AMAVATTAIGVYFYLQSQDPTQVESLGWLPVASLCIFIIMFSMGYGPVPWLMMGELFATD 455

Query: 238 VKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 297
           +KG A  +      L+ FVV KTFDD+    G G  F  FA   ++G FFV+F VPETK 
Sbjct: 456 IKGFAGSLAGTSNWLLAFVVTKTFDDLNNGLGIGGTFWLFAGLTVLGVFFVFFAVPETKG 515

Query: 298 KSLQQIQDELSGVKKKKKARRTGSASRK 325
           KSL +IQ EL+G +    A  +  A+ K
Sbjct: 516 KSLNEIQQELAGNRSNPSAVVSNGAAEK 543

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195021750|ref|XP_001985455.1| GH14492 [Drosophila grimshawi] gi|193898937|gb|EDV97803.1| GH14492 [Drosophila grimshawi]

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 135/309 (43%), Positives = 192/309 (62%), Gaps = 3/309 (0%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
           M+  GIL+ Y IG+    + +  + C ++P++  ++F  + PE+P YL+SK R + A  S
Sbjct: 222 MITIGILFVYGIGAGLNVFWM-SVVCGILPIIFGVIFFFM-PESPTYLVSKDRTQAAVNS 279

Query: 61  LLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
           +  LRG +YD   EL+EL K      + K +++E  +   T+KA  + +GL+ F   SGI
Sbjct: 280 IQWLRGQDYDYAPELEELHKTNREIRENKVNIMEALTRPVTIKALSISLGLMFFQQVSGI 339

Query: 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180
           N VIFY   I  A N+ I S +    ++G +QV+ TF S L+VDK GRR LLL S I MA
Sbjct: 340 NAVIFYSNAIFEAANTGIRS-DMSTILIGVMQVVATFVSVLVVDKLGRRILLLASGIVMA 398

Query: 181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240
           +   A+G YFY+   DEK VD LG LPV+SL ++I++FS+GFGP+P +MMGELF  D+KG
Sbjct: 399 LSTIAIGVYFYMKDQDEKSVDNLGWLPVSSLCVFIVMFSIGFGPVPWLMMGELFATDIKG 458

Query: 241 LALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL 300
            A  +      ++ FVV KTF ++    GTG  F  FA   ++G  FV+F VPETK KSL
Sbjct: 459 FAGSIAGTTNWVLAFVVTKTFKNLNEGLGTGGTFWLFAGLTLVGVIFVFFAVPETKGKSL 518

Query: 301 QQIQDELSG 309
            +IQ EL+G
Sbjct: 519 NEIQQELAG 527

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198466442|ref|XP_002135189.1| GA23919 [Drosophila pseudoobscura pseudoobscura] gi|198150603|gb|EDY73816.1| GA23919 [Drosophila pseudoobscura pseudoobscura]

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 137/314 (43%), Positives = 195/314 (62%), Gaps = 9/314 (2%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLS--CLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAE 58
           M+  GIL+ Y +G+     ++  LS  C +IP++  ++F  + PE+P YL++K R + A 
Sbjct: 222 MITMGILFVYAVGA---GVSVFWLSVICGIIPIVFGVIFFFM-PESPTYLVAKGRSESAI 277

Query: 59  KSLLILRGPNYDIHGELDELQKELDIQAQKKK-SLVEIYSNKATVKATIVIVGLLCFLSF 117
           KS+  LRG  YD   E++EL +E D + ++ K +L    +   T KA  + +GL+ F   
Sbjct: 278 KSIQWLRGKEYDYAPEIEEL-RETDREIRENKVNLFAALNRPVTRKALAISLGLMFFQQL 336

Query: 118 SGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI 177
            GIN VIFY  +I +  N  I S  +   ++G +QV+ TF S+L+VDK GRR LLL S  
Sbjct: 337 CGINAVIFYSSKIFLDANIGIGS-EWATIMIGIMQVVATFVSTLVVDKLGRRILLLASGS 395

Query: 178 CMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD 237
            MA+   A+G YF+L   D+  VD LG LPVASL I+I++FS+G+GP+P +MMGELF  D
Sbjct: 396 VMALSTTAIGVYFFLQDQDQSKVDDLGWLPVASLCIFILMFSIGYGPVPWLMMGELFATD 455

Query: 238 VKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 297
           +KG A  +      L+ FVV KTFDD+  A G G  F  FA   ++G FFV+F VPETK 
Sbjct: 456 IKGFAGSIAGTSNWLLAFVVTKTFDDLNDALGNGGTFWLFAGLTVLGVFFVFFAVPETKG 515

Query: 298 KSLQQIQDELSGVK 311
           KSL +IQ EL+G +
Sbjct: 516 KSLNEIQQELAGNR 529

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428086|ref|XP_002062105.1| GK17357 [Drosophila willistoni] gi|194158190|gb|EDW73091.1| GK17357 [Drosophila willistoni]

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 136/316 (43%), Positives = 195/316 (61%), Gaps = 5/316 (1%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
           M+  GIL+ Y IG+   D   + + C V+P++  ++F  + PE+P YL+SK R + A +S
Sbjct: 235 MITLGILFVYAIGAGL-DVFYMSVVCGVLPIIFGVIFFFM-PESPTYLVSKNRSESAVQS 292

Query: 61  LLILRGPNYDIHGELDELQKELDIQAQKKK-SLVEIYSNKATVKATIVIVGLLCFLSFSG 119
           +  LRG  YD   EL+EL  E D Q ++ K +++   +   T KA  + +GL+ F    G
Sbjct: 293 IQWLRGQQYDYAAELEELH-ETDRQIRENKVNVLSALNRPVTRKALAISLGLMFFQQVCG 351

Query: 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM 179
           IN VIFY K+I    N+ I S      +VG +QV+ TF S+L+VDK GRR LLL S I M
Sbjct: 352 INAVIFYSKKIFEDANTGI-SSGMSTILVGVMQVVATFVSTLVVDKLGRRILLLASGIVM 410

Query: 180 AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
           A+   A+G YFYL   DE  V+ +  LPVASL ++II+FS+G+GP+P +MMGELF  D+K
Sbjct: 411 ALSTTAIGVYFYLKDQDEDSVESITWLPVASLCVFIIMFSIGYGPVPWLMMGELFATDIK 470

Query: 240 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKS 299
           G A  +      ++ F+V KTF ++  + G G  F  FA   +IG FFV+F VPETK KS
Sbjct: 471 GFAGSIAGTTNWVLAFIVTKTFTNLNDSLGAGGTFWLFAGLTVIGVFFVFFAVPETKGKS 530

Query: 300 LQQIQDELSGVKKKKK 315
           L +IQ EL+G +  ++
Sbjct: 531 LNEIQAELAGNRSTEQ 546

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195327241|ref|XP_002030330.1| GM24627 [Drosophila sechellia] gi|194119273|gb|EDW41316.1| GM24627 [Drosophila sechellia]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 140/319 (43%), Positives = 191/319 (59%), Gaps = 9/319 (2%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLS--CLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAE 58
           M+  GIL+ Y +G+      I  LS  C ++P++   VF  + PE+P YL+SK R ++A 
Sbjct: 222 MITIGILFVYAVGA---GVNIFWLSIICGILPLIFGAVFFFM-PESPTYLVSKDRSENAI 277

Query: 59  KSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNK-ATVKATIVIVGLLCFLSF 117
           KS+  LRG  YD   EL EL +E D + +  K  V    N+  T KA  + +GL+ F   
Sbjct: 278 KSIQWLRGKEYDYEPELAEL-RETDRETKANKVNVWAALNRPVTRKALAISMGLMFFQQV 336

Query: 118 SGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI 177
            GIN VIFY  RI +  N+ I    +   ++G +QV+ TF S+L+VDK GRR LLL S I
Sbjct: 337 CGINAVIFYASRIFLEANTGI-EAEWASILIGIMQVVATFVSTLVVDKLGRRILLLASGI 395

Query: 178 CMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD 237
            MA+   A+G YFYL K D   V  LG LPVASL ++II+FS+G+GP+P +MMGELF  D
Sbjct: 396 SMAVSTTAIGVYFYLQKQDRAQVVSLGWLPVASLCLFIIMFSIGYGPVPWLMMGELFATD 455

Query: 238 VKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 297
           +KG A  +      L+ FVV KTF ++    G G  F  FA   ++G  FV+F VPETK 
Sbjct: 456 IKGFAGSLAGTSNWLLAFVVTKTFVNLNDGLGIGGTFWLFAGLTVLGVIFVFFAVPETKG 515

Query: 298 KSLQQIQDELSGVKKKKKA 316
           KSL +IQ EL+G +   +A
Sbjct: 516 KSLNEIQQELAGNRSTPQA 534

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195493950|ref|XP_002094633.1| GE20094 [Drosophila yakuba] gi|194180734|gb|EDW94345.1| GE20094 [Drosophila yakuba]

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 140/319 (43%), Positives = 191/319 (59%), Gaps = 9/319 (2%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLS--CLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAE 58
           M+  GIL+ Y +G+      I  LS  C ++P++  ++F  + PE+P YL+SK R ++A 
Sbjct: 222 MITIGILFVYAVGA---GVNIFWLSVICGILPLVFGVIFFFM-PESPTYLVSKDRSENAI 277

Query: 59  KSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKA-TVKATIVIVGLLCFLSF 117
           KS+  LRG  YD   EL EL +E+D + +  K  V    N+  T KA  + +GL+ F   
Sbjct: 278 KSIQWLRGKEYDYEPELAEL-REIDRETKASKVNVWAALNRPVTRKALAISMGLMFFQQV 336

Query: 118 SGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI 177
            GIN VIFY  RI    N+ I  P +   I+G +QV+ TF S+L+VDK GRR LLL S I
Sbjct: 337 CGINAVIFYSSRIFKEANTGI-GPQWATIIIGIMQVVATFVSTLVVDKLGRRILLLASGI 395

Query: 178 CMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD 237
            MAI   A+G YFYL   D   V  LG LPV SL ++II+FS+G+GP+P +MMGELF  D
Sbjct: 396 AMAISTTAIGVYFYLQDQDINQVASLGWLPVGSLCLFIIMFSIGYGPVPWLMMGELFATD 455

Query: 238 VKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 297
           +KG A  +      L+ FVV KTF ++    G G  F  FA   ++G  FV+F VPETK 
Sbjct: 456 IKGFAGSLAGTSNWLLAFVVTKTFVNLNEGMGIGGTFWLFAGLTVLGVIFVFFAVPETKG 515

Query: 298 KSLQQIQDELSGVKKKKKA 316
           KSL +IQ EL+G +   +A
Sbjct: 516 KSLNEIQQELAGNRSTPEA 534

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
FB|FBgn0036316	539	CG10960 [Drosophila melanogast	0.923	0.578	0.432	1.3e-59
FB|FBgn0037386	502	CG1208 [Drosophila melanogaste	0.893	0.601	0.394	4.4e-52
UNIPROTKB|B4QBN3	488	Tret1-2 "Facilitated trehalose	0.884	0.612	0.399	7.4e-50
FB|FBgn0034247	465	CG6484 [Drosophila melanogaste	0.920	0.668	0.387	9.5e-50
UNIPROTKB|B4HNS1	488	Tret1-2 "Facilitated trehalose	0.884	0.612	0.396	1.2e-49
FB|FBgn0033644	488	Tret1-2 "Trehalose transporter	0.887	0.614	0.384	5.2e-49
FB|FBgn0037387	491	CG1213 [Drosophila melanogaste	0.896	0.617	0.365	6e-48
UNIPROTKB|Q17NV8	806	Tret1 "Facilitated trehalose t	0.884	0.370	0.396	1.3e-46
FB|FBgn0028560	444	sut4 "sugar transporter 4" [Dr	0.872	0.664	0.347	1.4e-46
UNIPROTKB|A9ZSY2	502	Tret1 "Facilitated trehalose t	0.905	0.609	0.357	2.3e-46

FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 137/317 (43%), Positives = 192/317 (60%)

Query:     1 MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
             M+  GIL+ Y +G+  + + +  + C ++P++   +F  + PE+P YL+SK R ++A KS
Sbjct:   222 MITIGILFVYAVGAGVKIFWLSII-CGILPLIFGAIFFFM-PESPTYLVSKDRSENAIKS 279

Query:    61 LLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNK-ATVKATIVIVGLLCFLSFSG 119
             +  LRG  YD   EL EL +E D + +  K  V    N+  T KA  + +GL+ F    G
Sbjct:   280 IQWLRGKEYDYEPELAEL-RETDRETKANKVNVWAALNRPVTRKALAISMGLMFFQQVCG 338

Query:   120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM 179
             IN VIFY  RI +  N+ I    +   ++G +QV+ TF S+L+VDK GRR LLL S I M
Sbjct:   339 INAVIFYASRIFLEANTGI-EAEWATILIGIMQVVATFVSTLVVDKLGRRILLLASGISM 397

Query:   180 AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
             AI   A+G YF+L K D   V  LG LPVASL ++II+FS+G+GP+P +MMGELF  D+K
Sbjct:   398 AISTTAIGVYFFLQKQDAAQVVSLGWLPVASLCLFIIMFSIGYGPVPWLMMGELFATDIK 457

Query:   240 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKS 299
             G A  +      L+ FVV KTF ++    G G  F  FA   ++G  FVYF VPETK KS
Sbjct:   458 GFAGSLAGTSNWLLAFVVTKTFVNLNDGLGIGGTFWLFAGLTVVGVIFVYFAVPETKGKS 517

Query:   300 LQQIQDELSGVKKKKKA 316
             L +IQ EL+G +   +A
Sbjct:   518 LNEIQQELAGNRSTPQA 534

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

FB|FBgn0037386 CG1208 [Drosophila melanogaster (taxid:7227)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 122/309 (39%), Positives = 185/309 (59%)

Query:     1 MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
             ++  GIL+ YV+G+L   +  + L CL+IP+L LLV L + PETPVYLL   +R +A ++
Sbjct:   200 LLTIGILFIYVVGALVS-WKTLSLLCLIIPIL-LLVGLFIVPETPVYLLKNGKRSEANRA 257

Query:    61 LLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
             L  L G   +    +  +Q +LD Q     S+ +++SN+A+    ++ V L+ F  FSGI
Sbjct:   258 LKWLWGDYCNTSNAIQAIQNDLD-QTGVDASVKDLFSNRASRNGMVISVLLMVFQQFSGI 316

Query:   121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180
             N VIF++  I    +S  ++PN    +VG +QVIMT  SSLL++KAGR+ LL+ S   M 
Sbjct:   317 NAVIFFMNEIF--ESSSTLNPNVCTIVVGVVQVIMTLASSLLIEKAGRKILLIFSSTIMT 374

Query:   181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240
             +C+  LG Y  + +  + L   +G LP+  + ++I+ FSVG+GPIP +MMGELF PDVKG
Sbjct:   375 VCLAMLGAYNTINRHTD-LSQSIGWLPLLCIVLFIVSFSVGYGPIPWMMMGELFMPDVKG 433

Query:   241 LALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL 300
             +A+ +  ++  +   +V   F  V  A G  V F  F+ +  + T +V   + ETK KS 
Sbjct:   434 IAVSLSVMMNWVCVSLVTWLFG-VLNAGGADVPFWFFSAWMGVATAYVAIALQETKGKSA 492

Query:   301 QQIQDELSG 309
              QIQ  LSG
Sbjct:   493 SQIQSWLSG 501

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 123/308 (39%), Positives = 175/308 (56%)

Query:     5 GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
             GIL  YV GS + +++++      +PV   L+ +I+ PETP + +++ + + A K+L  L
Sbjct:   170 GILVCYVAGS-FMNWSMLAFLGAALPV-PFLILMIIIPETPRWFVNRGQEERARKALKWL 227

Query:    65 RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
             RG   D+  EL +L   Q E D QA++   L E++  +  +K   + +GL+ F  FSGIN
Sbjct:   228 RGKEADVEPELKDLMQSQAEADSQARRNTCL-ELFK-RINLKPLSISLGLMFFQQFSGIN 285

Query:   122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
              VIFY  +I     S I S N    IVG +    TF   LL+D+ GR+ LL ISDI M +
Sbjct:   286 AVIFYTVQIFKDAGSTIDS-NLCTIIVGIVNFFATFMGILLIDRLGRKILLYISDIAMIL 344

Query:   182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
              +  LG +FY  K     V  LG LP+    IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct:   345 TLSILGGFFYC-KAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGP 403

Query:   242 ALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQ 301
             A  V+        FVV KTF D+  A G   AF  F V CI+G FFV   VPET+ KSL+
Sbjct:   404 AASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGVVCIVGLFFVIICVPETRGKSLE 463

Query:   302 QIQDELSG 309
             +I+ ++ G
Sbjct:   464 EIERKMMG 471

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

FB|FBgn0034247 CG6484 [Drosophila melanogaster (taxid:7227)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 122/315 (38%), Positives = 177/315 (56%)

Query:     1 MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
             ++VSG+LY Y++G+     TI  L C ++PV+  ++   + PE+PVYL  K R  DA K+
Sbjct:   147 LIVSGVLYGYLVGAFLPLLTINIL-CAILPVIFAIIHFFM-PESPVYLAMKGRNDDAAKA 204

Query:    61 LLILRGPNYDIHGELDELQKELDIQAQKKK-SLVEIYSNKATVKATIVIVGLLCFLSFSG 119
             L  LRG + DI  EL E+ +E   Q    + +++        +K   + V L  F  ++G
Sbjct:   205 LQWLRGKDADIDDELKEILEESQKQIDMPQVNILSSLRRPIVLKGLGIAVLLQVFQQWTG 264

Query:   120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM 179
             IN V+FY   I   T S I S +    I+G  QV  T  +  ++DKAGRR LLLIS + M
Sbjct:   265 INAVLFYSASIFEDTGSDI-SGSDATLIIGVTQVTSTLVAVAIIDKAGRRILLLISGVLM 323

Query:   180 AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
             A+    +G YF L + D   +D  G LP++S+ I+II FS+GFGP+P ++M ELF+ DVK
Sbjct:   324 AVSTALMGVYFQLKENDPASMDNFGWLPISSICIFIIFFSIGFGPVPWLVMAELFSEDVK 383

Query:   240 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKS 299
              +A  +      L  FVV   F  ++ + G G  F  F    +I  F+  F VPETK K+
Sbjct:   384 SVAGSIAGTSNWLSAFVVTLLFPILKSSIGPGPTFWIFTAIAVIAFFYSLFFVPETKGKT 443

Query:   300 LQQIQDELSGVKKKK 314
             + +IQD LSG K  K
Sbjct:   444 IIEIQDLLSGGKGVK 458

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|B4HNS1 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila sechellia (taxid:7238)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 122/308 (39%), Positives = 175/308 (56%)

Query:     5 GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
             GIL  YV GS + +++I+      +PV   L+ +I+ PETP + +++ + + A K+L  L
Sbjct:   170 GILVCYVAGS-FMNWSILAFLGAALPV-PFLILMIIIPETPRWFVNRGQEERARKALKWL 227

Query:    65 RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
             RG   D+  EL +L   Q E D QA +   L E++  +  +K   + +GL+ F  FSGIN
Sbjct:   228 RGKEADVEPELKDLMQSQAEADSQATRNTCL-ELFK-RINLKPLSISLGLMFFQQFSGIN 285

Query:   122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
              VIFY  +I     S I S N    IVG +    TF   +L+D+ GR+ LL +SDI M +
Sbjct:   286 AVIFYTVQIFKDAGSTIDS-NLCTIIVGIVNFFATFMGIILIDRLGRKILLYVSDIAMIL 344

Query:   182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
              +  LG +FY  K     V  LG LP++   IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct:   345 TLSILGGFFYC-KAHGPDVSHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGP 403

Query:   242 ALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQ 301
             A  V+        FVV KTF D+  A G   AF  F V CI+G FFV   VPET+ KSL+
Sbjct:   404 AASVVTAFNWFCTFVVTKTFQDLTVAMGPHGAFWLFGVVCIVGLFFVIIYVPETRGKSLE 463

Query:   302 QIQDELSG 309
             +I+ ++ G
Sbjct:   464 EIERKMMG 471

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 118/307 (38%), Positives = 172/307 (56%)

Query:     5 GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
             GIL  YV GS + +++++      +PV   L+ +I+ PETP + +++ + + A K+L  L
Sbjct:   170 GILVCYVAGS-FMNWSMLAFLGAALPV-PFLILMIIIPETPRWFVNRGQEERARKALKWL 227

Query:    65 RGPNYDIHGELDEL-QKELDIQAQK-KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINV 122
             RG   D+  EL EL Q + D   Q  + + +E++     +K   + +GL+ F  FSGIN 
Sbjct:   228 RGKEADVEPELKELMQSQADADRQATQNTCLELFKRN-NLKPLSISLGLMFFQQFSGINA 286

Query:   123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAIC 182
             VIFY  +I     S I S N    IVG +    TF   +L+D+ GR+ LL +SDI M + 
Sbjct:   287 VIFYTVQIFKDAGSTIDS-NLSTIIVGVVNFFATFMGIILIDRLGRKILLYVSDIAMIVT 345

Query:   183 IGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLA 242
             +  LG +FY  K     V  LG LP+    IYI+ FS+GFGPIP +MMGE+    ++G A
Sbjct:   346 LSILGGFFYC-KAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPA 404

Query:   243 LGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQ 302
               V+        FVV KTF D+  A G   AF  F   CI+G FFV   VPET+ KSL++
Sbjct:   405 ASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGLFFVIIFVPETRGKSLEE 464

Query:   303 IQDELSG 309
             I+ ++ G
Sbjct:   465 IERKMMG 471

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0005353 "fructose transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

FB|FBgn0037387 CG1213 [Drosophila melanogaster (taxid:7227)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 113/309 (36%), Positives = 181/309 (58%)

Query:     2 VVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSL 61
             +V GILY Y IG  Y  Y  +   C+V+PV+  LVF ++ PE+P +   K R+ +A KSL
Sbjct:   185 IVGGILYVYAIGP-YVSYQALQWCCIVVPVVFDLVFYMM-PESPYFFAGKGRKSEALKSL 242

Query:    62 LILRGPNYD-IHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
               LRG + + +H E+ E+Q  ++     K ++++++ N    +A  +  GL+ F   SGI
Sbjct:   243 QFLRGQSAEGVHDEMAEIQANVEEAMASKGTVMDLFKNAGNRRALFICAGLISFQQLSGI 302

Query:   121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180
             NVV+F  + I  + N+ +  P     I+G +QV  +  + L+ D+ GR+ +LL S   M+
Sbjct:   303 NVVLFNSQSIFASANTGL-DPAIATIIIGCVQVGSSALTPLVADRLGRKVMLLTSSSVMS 361

Query:   181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240
             I + ALG +FY+ +L +  +  +  +PV +L IY IV+  GFGP+P  ++GE+F  ++K 
Sbjct:   362 IGLAALGAFFYM-QLVKGDISSVVWMPVPALIIYNIVYCTGFGPLPWAVLGEMFPANIKS 420

Query:   241 LALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL 300
             +A  V+      + F+V   +  ++ A G+  AF  FAV  ++  FFV FVV ETK  SL
Sbjct:   421 VASSVVASTCWTLGFLVTFFYPSLD-ALGSYYAFWLFAVCMVVAFFFVLFVVMETKGLSL 479

Query:   301 QQIQDELSG 309
             QQIQD L+G
Sbjct:   480 QQIQDRLNG 488

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)]

 Score = 494 (179.0 bits), Expect = 1.3e-46, P = 1.3e-46
 Identities = 122/308 (39%), Positives = 173/308 (56%)

Query:     5 GILYTYVIGSLYEDYTIICL--SCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLL 62
             GIL  +V G  Y D++ +    + L IP L LL+FLI  PETP + +S+ R   A K+L 
Sbjct:   487 GILLCFVAGK-YMDWSGLAFLGAALPIPFL-LLMFLI--PETPRWYVSRGRDDRARKALQ 542

Query:    63 ILRGPNYDIHGELDELQKE-LDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
              LRG   D+  EL  + K   D +    +S +     KA +K  ++ +GL+ F   SGIN
Sbjct:   543 WLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLMKKANLKPLLISLGLMFFQQLSGIN 602

Query:   122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
              VIFY  +I     S I   N    IVG +  I TF +++L+D+ GR+ LL ISD+ M I
Sbjct:   603 AVIFYTVQIFQDAGSTI-DENLCTIIVGVVNFIATFIATMLIDRLGRKMLLYISDVAMII 661

Query:   182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
              +  LG +FY+ K   + V  +G LP+A+  IY++ FS+GFGPIP +MMGE+    ++G 
Sbjct:   662 TLMTLGGFFYV-KNSGQDVSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGEILPGKIRGS 720

Query:   242 ALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQ 301
             A  V         F+V KTF D+  A GT   F  F   C+IG  FV F VPET+ KSL+
Sbjct:   721 AASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVIFYVPETQGKSLE 780

Query:   302 QIQDELSG 309
              I+ ++ G
Sbjct:   781 DIERKMMG 788

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

FB|FBgn0028560 sut4 "sugar transporter 4" [Drosophila melanogaster (taxid:7227)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 107/308 (34%), Positives = 170/308 (55%)

Query:     1 MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
             ++V GILY +V+G   + +    ++C ++PV+   V +I  PE+P++L  K + + AEKS
Sbjct:   144 LIVFGILYAFVVGGFVKTF-YFNIACAILPVI-FFVLMIFMPESPIFLAQKGKAEKAEKS 201

Query:    61 LLILRGPNYDIHGELDELQKELDIQAQKKKSLV-EIYSNKATVKATIVIVGLLCFLSFSG 119
             L  LRG + D+ GEL    KE+  + QK+K+ V +I   + T+K   + +GL+ F   +G
Sbjct:   202 LKFLRGKDADVSGEL----KEMSAEGQKEKASVGKILCRRITLKGLFLSIGLMLFQQMTG 257

Query:   120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM 179
             IN +IFY    +  T    + P     IVG +Q I T  S L+++K GR+ LLL+S   M
Sbjct:   258 INAIIFY-STFIFETAGSTLEPRISTIIVGIVQAIATIISILVIEKVGRKILLLVSACMM 316

Query:   180 AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
              I    +  YF +L     +  G+G L + ++ ++II FS+GFGP+P +MM ELF  DVK
Sbjct:   317 GISTLIMALYFGML-----MKSGVGWLALIAVCVFIIGFSLGFGPVPWLMMAELFAEDVK 371

Query:   240 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKS 299
              LA  +         F+V   F  +    G    F  F  + +    F+ F++PETK K+
Sbjct:   372 ALAGSIAGTTNWCFAFIVTLLFPVLNDIIGATACFAIFFGFAVAAFVFILFLIPETKGKT 431

Query:   300 LQQIQDEL 307
             L +IQ ++
Sbjct:   432 LNEIQAKM 439

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 113/316 (35%), Positives = 178/316 (56%)

Query:     4 SGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLI 63
             SGIL  +  G +Y  +  + L    IP++ L++  ++ PETP + +SK + K+A KSL  
Sbjct:   183 SGILMCFTAG-MYLAWRNLALLGACIPIIFLILMFLI-PETPRWYISKGKIKEARKSLQW 240

Query:    64 LRGPNYDIHGELDELQKELDIQAQK---KKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
             LRG   DI  ELD +QK + I++++   + +L+E++  K  +K   + +GL+ F  FSGI
Sbjct:   241 LRGKTADISEELDSIQK-MHIESERIATEGALIELF-RKNHIKPVFISLGLMFFQQFSGI 298

Query:   121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180
             N VIFY  +I   + S +   N    IVG +  I TF +++++D+ GR+ LL IS I M 
Sbjct:   299 NAVIFYTVQIFKDSGSTV-DENLSTIIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMC 357

Query:   181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240
             I +   G +FY+ +L +  V   G +P+ SL +Y+I FS GFGPIP +MMGE+    ++G
Sbjct:   358 ITLFTFGTFFYVKELMD--VTAFGWIPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRG 415

Query:   241 LALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL 300
              A  V         FVV KT++D+    G    F  F     +   FV   VPET+ +SL
Sbjct:   416 TAASVATAFNWSCTFVVTKTYEDLVLHIGPYGTFWLFGTLVAVAFIFVIICVPETRGRSL 475

Query:   301 QQIQDELSGVKKKKKA 316
             ++I+   +G  ++  A
Sbjct:   476 EEIERRFAGPVRRTSA 491

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P58354	GTR8_BOVIN	No assigned EC number	0.3252	0.8698	0.6150	yes	N/A
Q9JIF3	GTR8_MOUSE	No assigned EC number	0.3107	0.8786	0.6226	yes	N/A
Q9NY64	GTR8_HUMAN	No assigned EC number	0.3313	0.8668	0.6142	yes	N/A
Q9JJZ1	GTR8_RAT	No assigned EC number	0.3069	0.8698	0.6150	yes	N/A
Q0WQ63	ERDL8_ARATH	No assigned EC number	0.3387	0.8668	0.6234	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	338
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-41
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-39
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-30
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-06
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-04
COG2211	467	COG2211, MelB, Na+/melibiose symporter and related	3e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	6e-04
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	0.002

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  150 bits (380), Expect = 2e-41
 Identities = 89/314 (28%), Positives = 144/314 (45%), Gaps = 14/314 (4%)

Query: 1   MVVSGILYTYVIGSL-----YED-YTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRR 54
            +  GIL  Y  GS          + I     L+   L L + L   PE+P +L+ K R 
Sbjct: 171 AITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRV 229

Query: 55  KDAEKSLLILRGPNYDIHGELDELQ-----KELDIQAQKKKSLVEIYSNKATVKATIVIV 109
           ++A KSL  LRG + +    LDEL+     + ++ ++ +        S +   +   + V
Sbjct: 230 EEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGV 289

Query: 110 GLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169
            L  F  F+GIN +++Y   I                IVG +    TF +  LVD+ GRR
Sbjct: 290 VLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR 349

Query: 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVM 229
           PLLLI    MAIC+  LG                G + +  + ++I  F++G+GP+P V+
Sbjct: 350 PLLLIGAAGMAICLFVLGILGA--SFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVI 407

Query: 230 MGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 289
           + E+F   ++   + +      L  F+V   F  +  + G G  F  F    ++G  FVY
Sbjct: 408 VSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY 467

Query: 290 FVVPETKNKSLQQI 303
           F +PETK ++L++I
Sbjct: 468 FFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  144 bits (366), Expect = 1e-39
 Identities = 92/311 (29%), Positives = 154/311 (49%), Gaps = 16/311 (5%)

Query: 1   MVVSGILYTYVIG-----SLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRK 55
            +  GIL   +IG         D   I L    +P + LL+ L+  PE+P +L+ K + +
Sbjct: 145 GITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLE 204

Query: 56  DAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLV-EIYSNKATVKATIVIVGLLCF 114
           +A   L  LRG + D+  E+ E +  L+   + +K+   E++  K   +  ++ V L  F
Sbjct: 205 EARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIF 263

Query: 115 LSFSGINVVIFYLKRILIATNSKIISPNYGQNI-VGFIQVIMTFFSSLLVDKAGRRPLLL 173
              +GIN + +Y   I     +  +S +    I VG +  + TF +  LVD+ GRRPLLL
Sbjct: 264 QQLTGINAIFYYSPTIF---ETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLL 320

Query: 174 ISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL 233
           +    MAIC   L     LL + +    G+  +    + ++I  F++G+GP+P V++ EL
Sbjct: 321 LGAAGMAIC--FLVLGVALLGVAKSKGAGIVAI--VFILLFIAFFALGWGPVPWVIVSEL 376

Query: 234 FTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP 293
           F   V+  A+ +      L  F++   F  +  A G  V F  FA   ++   FV+F VP
Sbjct: 377 FPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYV-FLVFAGLLVLFILFVFFFVP 435

Query: 294 ETKNKSLQQIQ 304
           ETK ++L++I 
Sbjct: 436 ETKGRTLEEID 446

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  120 bits (302), Expect = 2e-30
 Identities = 80/301 (26%), Positives = 141/301 (46%), Gaps = 34/301 (11%)

Query: 28  VIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQ 87
            IP L  L+ L   PETP YL+S+ +++ AE  L  + G        L E++  LD   +
Sbjct: 201 AIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-LATQALQEIKHSLDHGRK 259

Query: 88  KKKSLVEIYSNKATVKATIVIVGLL--CFLSFSGINVVIFYLKRIL----IATNSKIISP 141
               L+            ++++G++   F  F GINVV++Y   I      +T+  ++  
Sbjct: 260 TGGKLL-------MFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQ- 311

Query: 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201
                IVG I +  T  + + VDK GR+PL +I  + MAI + +LG  FY          
Sbjct: 312 ---TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--------TQ 360

Query: 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF 261
             G++ + S+  Y+  F++ +GP+  V++ E+F   ++G AL +      +  + V  TF
Sbjct: 361 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTF 420

Query: 262 ------DDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKK 315
                   +   F  G ++  +    ++   F++  VPETK K+L+++  E     + KK
Sbjct: 421 PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM--EALWEPETKK 478

Query: 316 A 316
            
Sbjct: 479 T 479

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 13/189 (6%)

Query: 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIV-GFIQVIMTFFSSLLV 163
            ++++ L  FL   G   ++ YL   L        +       + G   ++      LL 
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235

Query: 164 DKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFG 223
           D+ GRR LLL+  I + +    L        L          L + +L +        F 
Sbjct: 236 DRLGRRRLLLL--IGLLLAALGLLLLALAPSL---------ALLLVALLLLGFGLGFAFP 284

Query: 224 PIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCII 283
            +   +  EL  P+ +G A G+    GSL   +       +    G G  F   A   ++
Sbjct: 285 ALL-TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL 343

Query: 284 GTFFVYFVV 292
               +  + 
Sbjct: 344 AALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 61/272 (22%), Positives = 102/272 (37%), Gaps = 46/272 (16%)

Query: 42  PETPVYLLSKKRRKDAEKSLL-ILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKA 100
           PE+P +L+S+ R ++A K L  I +     +  E+  L  E D+ + KK+     YS   
Sbjct: 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQ-----YSFLD 318

Query: 101 TV-KATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMT--- 156
                 +    L   + +       + L   L          N G NI      I     
Sbjct: 319 LFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDL---------GNLGGNIY-LDLFISGLVE 368

Query: 157 ----FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA 212
                 + LL+D+ GRR  +  S +   + +  L    ++      L   L +L    + 
Sbjct: 369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLL---LFVPVDLYFLRTALAVLGKFGIT 425

Query: 213 I-YIIVFSVGFGPIPGVMMGELFTPDVKGLALGV---ICILGSLIEFVVVKTFDDVERAF 268
             + +V+         +   EL+   V+ L +GV   +  +GS+I   +V    +    F
Sbjct: 426 SAFQMVY---------LYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYL-GEKWL-F 474

Query: 269 GTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL 300
              V FG  A+   I T F    +PETK   L
Sbjct: 475 LPLVLFGGLALLAGILTLF----LPETKGVPL 502

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 27/155 (17%)

Query: 89  KKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN--VVIFYLKRILIATNSKIISPNYGQN 146
           K S + I+ N+  +   ++++  L       I   ++++Y+  +L       +       
Sbjct: 226 KDSFLLIFKNRPLL---LLLLMNLLLFIAFNIRGSIMVYYVTYVL---GDPELFAYLLLL 279

Query: 147 IVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLL 206
             G   +I       LV K G++ L LI    + + +G L  YF                
Sbjct: 280 ASGAGLLIGLILWPRLVKKFGKKKLFLIG--LLLLAVGYLLLYF------------TPAG 325

Query: 207 PVASLAIYIIVFSVGFG---PIPGVMMGELFTPDV 238
            V  + + +I+  VG G   P+P  M+    T D 
Sbjct: 326 SVVLIVVALIIAGVGTGIANPLPWAMVA--DTVDY 358

Length = 467

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 34/196 (17%), Positives = 71/196 (36%), Gaps = 28/196 (14%)

Query: 104 ATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLV 163
             + +   L  L    ++  +  L   L  + S+        +       + +  +  L 
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA---GLIVSAFSLGYALGSLLAGYLS 58

Query: 164 DKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFG 223
           D+ GRR +LL+  +  A  +G+L   F                 +  L +   +  +G G
Sbjct: 59  DRFGRRRVLLLGLLLFA--LGSLLLAF--------------ASSLWLLLVGRFLLGLGGG 102

Query: 224 ---PIPGVMMGELFTPDVKGLALGVICI---LGSLIEFVVVKTFDDVERAFGTGVAFGTF 277
              P    ++ E F P  +G ALG+      LG+L+  ++     +   + G    F   
Sbjct: 103 ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE---SLGWRWLFLIL 159

Query: 278 AVYCIIGTFFVYFVVP 293
           A+  ++    + F++ 
Sbjct: 160 AILGLLLALLLLFLLR 175

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 26/162 (16%)

Query: 158 FSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIV 217
            +  LVD  GR+P+ L+    + +    LG+ +  L                 LAIY++ 
Sbjct: 354 VTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS------------THGFLAIYVLA 401

Query: 218 -FSVGFGP--IPGVMMGELFTPDVKGLALGVICILGSL------IEFVVVKTFDDVERAF 268
            F   FGP     ++ GE+F    +  A G+    G          F+ +    D  + +
Sbjct: 402 QFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGY 461

Query: 269 GTGVAFG----TFAVYCIIGTFFVYFVVPETKNKSLQQIQDE 306
            TG+  G     FA++  +G  F   ++PETK KSL+++  E
Sbjct: 462 PTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSGE 502

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
KOG0569|consensus	485		100.0
KOG0254|consensus	513		99.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.96
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.95
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.95
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.95
KOG0253|consensus	528		99.94
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.93
TIGR00898	505	2A0119 cation transport protein.	99.93
PRK10642	490	proline/glycine betaine transporter; Provisional	99.89
KOG0252|consensus	538		99.88
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.86
KOG0255|consensus	521		99.84
PRK11663	434	regulatory protein UhpC; Provisional	99.83
PRK03893	496	putative sialic acid transporter; Provisional	99.81
PRK09952	438	shikimate transporter; Provisional	99.81
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.81
PRK10489	417	enterobactin exporter EntS; Provisional	99.81
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.81
PRK12307	426	putative sialic acid transporter; Provisional	99.8
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.8
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.79
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.79
TIGR00893	399	2A0114 d-galactonate transporter.	99.78
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.78
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.77
TIGR00891	405	2A0112 putative sialic acid transporter.	99.77
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.77
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.77
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.76
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.76
PRK09528	420	lacY galactoside permease; Reviewed	99.76
PRK15075	434	citrate-proton symporter; Provisional	99.76
TIGR00895	398	2A0115 benzoate transport.	99.75
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.75
PRK15011	393	sugar efflux transporter B; Provisional	99.75
PRK03545	390	putative arabinose transporter; Provisional	99.75
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.74
TIGR00895	398	2A0115 benzoate transport.	99.74
PRK09705	393	cynX putative cyanate transporter; Provisional	99.73
KOG2533|consensus	495		99.73
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.73
PRK11663	434	regulatory protein UhpC; Provisional	99.72
KOG2532|consensus	466		99.72
PRK11010	491	ampG muropeptide transporter; Validated	99.71
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.7
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.7
PRK03545	390	putative arabinose transporter; Provisional	99.7
PLN00028	476	nitrate transmembrane transporter; Provisional	99.69
TIGR00893	399	2A0114 d-galactonate transporter.	99.69
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.68
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.68
PRK09874	408	drug efflux system protein MdtG; Provisional	99.68
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.68
PRK05122	399	major facilitator superfamily transporter; Provisi	99.68
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.67
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.67
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.67
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.67
PRK10091	382	MFS transport protein AraJ; Provisional	99.67
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.67
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.67
PRK10054	395	putative transporter; Provisional	99.66
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.66
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.66
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.66
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.66
TIGR00891	405	2A0112 putative sialic acid transporter.	99.66
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.66
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.66
PRK10091	382	MFS transport protein AraJ; Provisional	99.65
TIGR00900	365	2A0121 H+ Antiporter protein.	99.65
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.65
PLN00028	476	nitrate transmembrane transporter; Provisional	99.65
PRK12382	392	putative transporter; Provisional	99.65
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.64
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.64
KOG1330|consensus	493		99.64
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.63
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.63
PRK10504	471	putative transporter; Provisional	99.63
PRK12307	426	putative sialic acid transporter; Provisional	99.63
PRK03699	394	putative transporter; Provisional	99.63
PRK09874	408	drug efflux system protein MdtG; Provisional	99.63
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.63
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.63
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.63
PRK10504	471	putative transporter; Provisional	99.62
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.62
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.62
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.62
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.62
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.61
PRK11902	402	ampG muropeptide transporter; Reviewed	99.61
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.61
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.61
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.61
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.6
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.6
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.6
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.59
TIGR00900	365	2A0121 H+ Antiporter protein.	99.59
PRK03633	381	putative MFS family transporter protein; Provision	99.59
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.59
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.59
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.59
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.58
PRK03699	394	putative transporter; Provisional	99.58
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.58
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.58
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.58
PRK11043	401	putative transporter; Provisional	99.57
PRK10489	417	enterobactin exporter EntS; Provisional	99.57
PRK11043	401	putative transporter; Provisional	99.57
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.57
PRK03893	496	putative sialic acid transporter; Provisional	99.56
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.56
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.56
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.56
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.56
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.56
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.55
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.55
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.54
PRK10642	490	proline/glycine betaine transporter; Provisional	99.54
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.54
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.54
PRK10054	395	putative transporter; Provisional	99.54
PRK05122	399	major facilitator superfamily transporter; Provisi	99.54
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.53
TIGR00901	356	2A0125 AmpG-related permease.	99.52
PRK09705	393	cynX putative cyanate transporter; Provisional	99.52
PRK12382	392	putative transporter; Provisional	99.51
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.51
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.51
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.51
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.5
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.49
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.49
TIGR00898	505	2A0119 cation transport protein.	99.48
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.48
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.48
KOG2615|consensus	451		99.48
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.48
KOG2504|consensus	509		99.48
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.48
PRK10429	473	melibiose:sodium symporter; Provisional	99.48
PRK15075	434	citrate-proton symporter; Provisional	99.47
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.47
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.47
PTZ00207	591	hypothetical protein; Provisional	99.47
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.47
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.45
KOG2532|consensus	466		99.45
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.45
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.45
PRK09952	438	shikimate transporter; Provisional	99.45
PRK10133	438	L-fucose transporter; Provisional	99.44
PRK09528	420	lacY galactoside permease; Reviewed	99.43
PRK09848	448	glucuronide transporter; Provisional	99.43
PRK03633	381	putative MFS family transporter protein; Provision	99.43
TIGR00805	633	oat sodium-independent organic anion transporter.	99.42
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.42
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.42
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.4
KOG3764|consensus	464		99.4
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.39
KOG0569|consensus	485		99.39
PF13347	428	MFS_2: MFS/sugar transport protein	99.39
PRK10133	438	L-fucose transporter; Provisional	99.39
COG2211	467	MelB Na+/melibiose symporter and related transport	99.39
PRK11902	402	ampG muropeptide transporter; Reviewed	99.38
PRK09669	444	putative symporter YagG; Provisional	99.38
TIGR00901	356	2A0125 AmpG-related permease.	99.37
KOG0255|consensus	521		99.36
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.36
KOG1330|consensus	493		99.36
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.34
PRK15011	393	sugar efflux transporter B; Provisional	99.34
KOG2504|consensus	509		99.34
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.33
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.33
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.33
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.33
PRK11010	491	ampG muropeptide transporter; Validated	99.32
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.32
PRK11462	460	putative transporter; Provisional	99.31
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.29
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.28
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.27
KOG0254|consensus	513		99.26
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.25
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.24
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.24
KOG2533|consensus	495		99.23
KOG4686|consensus	459		99.23
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.2
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.19
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.19
KOG0252|consensus	538		99.15
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.15
KOG2563|consensus	480		99.13
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.1
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.1
PRK09669	444	putative symporter YagG; Provisional	99.03
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.97
PRK10429	473	melibiose:sodium symporter; Provisional	98.96
KOG3764|consensus	464		98.96
KOG3762|consensus	618		98.95
PTZ00207	591	hypothetical protein; Provisional	98.94
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.92
PRK11462	460	putative transporter; Provisional	98.9
KOG0253|consensus	528		98.86
KOG3626|consensus	735		98.84
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.82
PF13347	428	MFS_2: MFS/sugar transport protein	98.81
KOG2816|consensus	463		98.79
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.79
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.79
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.77
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.76
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.74
KOG2615|consensus	451		98.72
KOG2325|consensus	488		98.7
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.63
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.62
PRK09848	448	glucuronide transporter; Provisional	98.61
COG2211	467	MelB Na+/melibiose symporter and related transport	98.58
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.57
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.55
PF12832	77	MFS_1_like: MFS_1 like family	98.55
TIGR00805	633	oat sodium-independent organic anion transporter.	98.54
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.48
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.38
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.34
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.28
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.2
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.19
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.18
KOG2816|consensus	463		98.12
KOG2563|consensus	480		98.1
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.97
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.96
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.89
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.84
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.77
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.76
KOG3626|consensus	735		97.73
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.68
COG0477	338	ProP Permeases of the major facilitator superfamil	97.49
KOG2325|consensus	488		97.47
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.44
KOG0637|consensus	498		97.42
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.27
KOG4686|consensus	459		97.17
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.08
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.97
KOG3810|consensus	433		96.96
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.95
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.88
KOG1237|consensus	571		96.73
KOG3098|consensus	461		96.68
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.67
KOG3762|consensus	618		96.62
KOG3098|consensus	461		96.54
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.47
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.17
KOG1479|consensus	406		96.07
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.03
KOG4332|consensus	454		95.95
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.71
COG3202	509	ATP/ADP translocase [Energy production and convers	95.64
PRK03612	521	spermidine synthase; Provisional	95.51
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.22
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.12
KOG3574|consensus	510		95.03
KOG3574|consensus	510		94.65
KOG1479|consensus	406		94.6
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.15
KOG0637|consensus	498		92.76
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	91.74
KOG4332|consensus	454		90.58
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	88.31
PRK10697	118	DNA-binding transcriptional activator PspC; Provis	86.97
KOG2601|consensus	503		86.43
KOG2881|consensus	294		85.85
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	83.55
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	83.23
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	83.16
PRK09609	312	hypothetical protein; Provisional	82.6
COG3202	509	ATP/ADP translocase [Energy production and convers	82.1
TIGR02978	121	phageshock_pspC phage shock protein C. All members	81.26
PF04024	61	PspC: PspC domain; InterPro: IPR007168 This domain	80.92
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	80.67

>KOG0569|consensus

Probab=100.00  E-value=8.7e-37  Score=256.87  Aligned_cols=300  Identities=29%  Similarity=0.418  Sum_probs=252.2

Q ss_pred             eechhhhhhhcch--------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhh-cCChHHHHHHHHHHhCCCcchHH
Q psy17628          3 VSGILYTYVIGSL--------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLS-KKRRKDAEKSLLILRGPNYDIHG   73 (338)
Q Consensus         3 ~~G~~~~~~i~~~--------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~   73 (338)
                      ++|.+++..++.-        |++.+.+.    .++.++.++...++||||||+.. +++.++|++.++++++.+++.++
T Consensus       162 ~~g~ll~~~~~l~~ilGt~~~W~~l~~~~----~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~  237 (485)
T KOG0569|consen  162 VIGILLGQVLGLPSLLGTEDLWPYLLAFP----LIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAE  237 (485)
T ss_pred             HHHHHHHHHHccHHhcCCCcchHHHHHHH----HHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence            4566666555443        99999999    55566588889999999999988 89999999999999998654443


Q ss_pred             HHHHHHHHHH--HhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHH
Q psy17628         74 ELDELQKELD--IQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFI  151 (338)
Q Consensus        74 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  151 (338)
                      ..+..++.++  .+++++.+++++++++..|+...+.+.+....++.+.+....|...++.+.|++..++.+.+...++.
T Consensus       238 ~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v  317 (485)
T KOG0569|consen  238 IEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIV  317 (485)
T ss_pred             HHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            3332222222  22236678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeee
Q psy17628        152 QVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMG  231 (338)
Q Consensus       152 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ..+.++++.++.||+|||++++.+..++.+..+++.......+..   .....+..+...+++...++.+.+|++|-+.+
T Consensus       318 ~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~---~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~a  394 (485)
T KOG0569|consen  318 NLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF---GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGA  394 (485)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHH
Confidence            999999999999999999999999999999888877664443322   02233455677788888999999999999999


Q ss_pred             ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHHHHhccc
Q psy17628        232 ELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGV  310 (338)
Q Consensus       232 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (338)
                      |++|++.|..++++.....++..++....++.+.+..|. ..|+.+.+.+.+..+..+.++||||+|+..|+.++.++.
T Consensus       395 ELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  395 ELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            999999999999999999999999999999999998887 678888888999999999999999999999888777655

>KOG0254|consensus

Probab=99.96  E-value=2e-27  Score=209.49  Aligned_cols=302  Identities=29%  Similarity=0.473  Sum_probs=232.3

Q ss_pred             eechhhhhhhcch-------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhC-CCcchHHH
Q psy17628          3 VSGILYTYVIGSL-------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRG-PNYDIHGE   74 (338)
Q Consensus         3 ~~G~~~~~~i~~~-------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~-~~~~~~~~   74 (338)
                      ++|.++++.++..       ||..+.+.   .+.+++ ..+..+++||||+|+.++++.+++++.++++++ .+.+.+.+
T Consensus       188 ~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~---~i~~~~-~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~  263 (513)
T KOG0254|consen  188 TIGILLGYCINYGTSKVYAGWRIPLGLA---LIPAVI-LALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVE  263 (513)
T ss_pred             HHHHHHHHHHhhhhccCCccHHHHHHHH---HHHHHH-HHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHH
Confidence            3455555555433       99999888   555555 444588999999999999999999999999998 34455555


Q ss_pred             HHHHHHHHH-Hh-h-hhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHH
Q psy17628         75 LDELQKELD-IQ-A-QKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFI  151 (338)
Q Consensus        75 ~~~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  151 (338)
                      .++.+.... +. . ..+..+.++++ +..+++..+...+..+.++.+++...+|.+.+++..|.+... .....+.++.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v  341 (513)
T KOG0254|consen  264 LELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVV  341 (513)
T ss_pred             HHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHH
Confidence            555442111 11 1 11123555555 557888999999999999999999999999999999876544 6677788888


Q ss_pred             HHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeee
Q psy17628        152 QVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMG  231 (338)
Q Consensus       152 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      .+++..++.++.||+|||++++.+...+.++.++++........+........+..+...+++...++.++++++|.+.+
T Consensus       342 ~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~s  421 (513)
T KOG0254|consen  342 NFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVS  421 (513)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhh
Confidence            89999999999999999999999999999999988877555433200122345667777778888889999999999999


Q ss_pred             ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHH-HHHhhccCCCCCCHHHHHHHhccc
Q psy17628        232 ELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTF-FVYFVVPETKNKSLQQIQDELSGV  310 (338)
Q Consensus       232 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  310 (338)
                      |.+|.+.|+++.++....+++.+.+.........+..+....|..++.++.+... ..+++.|||+++..++.++...+.
T Consensus       422 Eifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~  501 (513)
T KOG0254|consen  422 EIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG  501 (513)
T ss_pred             ccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence            9999999999999999999999888877776666655444567777777777776 677889999999999888766544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.96  E-value=8e-28  Score=211.91  Aligned_cols=271  Identities=20%  Similarity=0.213  Sum_probs=170.3

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChH-HHHHHHHHHhCCCcc-hHHHHHHHHHHHHHhhhhhhHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRK-DAEKSLLILRGPNYD-IHGELDELQKELDIQAQKKKSLV   93 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~-~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   93 (338)
                      ||++|.+.    .++.++.++.++++||||||+..+++.+ ++.+.+++..+.+.+ ..++.++.++   +++..+.+++
T Consensus       203 WR~~~~~~----~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  275 (502)
T TIGR00887       203 WRILIGFG----AVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKAST---AVEVPKASWS  275 (502)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhc---cccchhhhHH
Confidence            99999877    4555557777889999999999887764 466666666543221 1111111111   1111223577


Q ss_pred             HHHhCcc---chHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcch------------hhHHHHHHHHHHHHH
Q psy17628         94 EIYSNKA---TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNY------------GQNIVGFIQVIMTFF  158 (338)
Q Consensus        94 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~  158 (338)
                      ++++++.   .++..+......+. ....++....+.|.++++.|++..+.+.            ...+..++.+++.++
T Consensus       276 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~  354 (502)
T TIGR00887       276 DFFTHFFKWRHGKHLLGTAGSWFL-LDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWV  354 (502)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776431   22222222222222 2223445666789998888876553321            233344566778899


Q ss_pred             HHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchh
Q psy17628        159 SSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV  238 (338)
Q Consensus       159 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  238 (338)
                      .++++||+|||++++.+..+.+++..+++......  .      .. .......+.....+.+..+..+.+.+|.+|++.
T Consensus       355 ~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~--~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~  425 (502)
T TIGR00887       355 TVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL--S------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY  425 (502)
T ss_pred             HHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc--c------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhH
Confidence            99999999999999888877777766555432110  0      01 111222222223344556666678899999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------ccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHH
Q psy17628        239 KGLALGVICILGSLIEFVVVKTFDDVERAF----------GTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQ  304 (338)
Q Consensus       239 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (338)
                      |+++.|+.+.++++++++++.+.+.+.+..          ++...+++++++++++.+. ++++|||++++.+|.+
T Consensus       426 R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~  500 (502)
T TIGR00887       426 RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELS  500 (502)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhh
Confidence            999999999999999999999999888743          2334566777766666544 4567999998876643

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.95  E-value=1.8e-32  Score=239.15  Aligned_cols=295  Identities=32%  Similarity=0.527  Sum_probs=214.3

Q ss_pred             ceechhhhhhhcch---------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchH
Q psy17628          2 VVSGILYTYVIGSL---------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIH   72 (338)
Q Consensus         2 ~~~G~~~~~~i~~~---------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~   72 (338)
                      +.+|.+++..++..         ||+.+.+.   .+++++ .++..+++||||||+..+++.+|+++.++++++++.+.+
T Consensus       147 ~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~---~~~~l~-~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~  222 (451)
T PF00083_consen  147 WALGILLASLIGYIVSYYSDNWGWRILLIFG---AIPSLL-VLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDE  222 (451)
T ss_pred             ccccccccccccccccccccccccccccccc---cccccc-ccccccccccccceecccccccccccccccccccccccc
Confidence            45666666665442         99999999   555544 666778899999999999999999999999766533222


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHH
Q psy17628         73 GELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQ  152 (338)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  152 (338)
                      + .++..++.++.++.+.+++++++++..+++.+..+.+.......+.+....|.+.+.++.|.+..  ........+..
T Consensus       223 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~  299 (451)
T PF00083_consen  223 E-IEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVN  299 (451)
T ss_pred             c-ccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence            2 22222222222222256778888766667777777777777777777788888888888876655  34445556777


Q ss_pred             HHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeec
Q psy17628        153 VIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGE  232 (338)
Q Consensus       153 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  232 (338)
                      .++.+++.++.||+|||++++.+..+++++.+.++.........   ........+....+....++.++.+..+.+.+|
T Consensus       300 ~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~E  376 (451)
T PF00083_consen  300 FLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSS---SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAE  376 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc---ccccccccceeeeeccccccccccccccccccc
Confidence            78888888999999999999999888888777665111111000   001123334444455556666788888889999


Q ss_pred             cCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q psy17628        233 LFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDE  306 (338)
Q Consensus       233 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (338)
                      .+|++.|+++.++....+++++.+.+.+.+.+.+..+....+.++++++++..++.++++|||++++++|.+++
T Consensus       377 lfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  377 LFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence            99999999999999999999999999888888777764567778888888888888889999999999988764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.95  E-value=1.4e-26  Score=207.54  Aligned_cols=263  Identities=16%  Similarity=0.212  Sum_probs=177.6

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcch----HHHH--HHHHHHHHH-----
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDI----HGEL--DELQKELDI-----   84 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~----~~~~--~~~~~~~~~-----   84 (338)
                      ||++|++.    +++.++.++.++++||||+|+..+++.+++.+.++++++.+...    ....  ...+.....     
T Consensus       333 WR~l~~i~----~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (742)
T TIGR01299       333 WRVFVIVC----AFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIE  408 (742)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhc
Confidence            99999888    45556577778889999999999999999999999998765321    1100  000000000     


Q ss_pred             ---hhh----------------hhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-----------
Q psy17628         85 ---QAQ----------------KKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-----------  134 (338)
Q Consensus        85 ---~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  134 (338)
                         +..                ...+++++++.+ ++++++++..+++...+ +++.+..|+|.++++.           
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~~~~~~~~~~  486 (742)
T TIGR01299       409 IESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQADDYAALTKN  486 (742)
T ss_pred             ccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence               000                001455666554 77777777777665554 5888999999875431           


Q ss_pred             -------------------------------cC-----C---------------CC------------------------
Q psy17628        135 -------------------------------NS-----K---------------II------------------------  139 (338)
Q Consensus       135 -------------------------------g~-----~---------------~~------------------------  139 (338)
                                                     |+     +               ..                        
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~  566 (742)
T TIGR01299       487 FPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKF  566 (742)
T ss_pred             ccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhh
Confidence                                           00     0               00                        


Q ss_pred             -----------------------------CcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHH
Q psy17628        140 -----------------------------SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYF  190 (338)
Q Consensus       140 -----------------------------~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~  190 (338)
                                                   .......+.+++.+++.+++|+++||+|||++++.+.++.+++.+++++..
T Consensus       567 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~  646 (742)
T TIGR01299       567 IDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN  646 (742)
T ss_pred             hhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence                                         012224566788899999999999999999999999888888877665531


Q ss_pred             HHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628        191 YLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT  270 (338)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (338)
                                  .....++..++++++.+..+ +..+++++|++|++.|++++|+.+..+.+|++++|.+.+.+.+. +.
T Consensus       647 ------------s~~~ll~~~~l~g~~~~~~~-~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~  712 (742)
T TIGR01299       647 ------------SESAMIALLCLFGGLSIAAW-NALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TK  712 (742)
T ss_pred             ------------cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh
Confidence                        11222333334444434333 34448899999999999999999999999999999999887764 34


Q ss_pred             ceeehhhhHHHHHHHHHHHhhccCCCCCC
Q psy17628        271 GVAFGTFAVYCIIGTFFVYFVVPETKNKS  299 (338)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (338)
                      ..++++.+++.++++++.+ ++|||+++.
T Consensus       713 ~~pf~i~a~~lll~~ll~~-~LPET~~~~  740 (742)
T TIGR01299       713 AAPILFASAALACGGLLAL-KLPDTRGQV  740 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence            4566666666666555444 479998764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.95  E-value=4.2e-25  Score=194.34  Aligned_cols=275  Identities=27%  Similarity=0.466  Sum_probs=184.1

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||++|++.   +++.++ .++..+++||+|+|+..+++.+++++..++..+.+. .+...++.++...++..   ..+..
T Consensus       193 Wr~~f~~~---~~~~~~-~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~  264 (479)
T PRK10077        193 WRYMFASE---AIPALL-FLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-ATQALQEIKHSLDHGRK---TGGKL  264 (479)
T ss_pred             hHHHHHHH---HHHHHH-HHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-HHHHHHHHHHHHHHhhh---hhhhh
Confidence            99999998   666555 455577899999999888888887777776654322 11111111111110000   00111


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLIS  175 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~  175 (338)
                      +..  .............+....+++...++.|.+.++.|.+...........++..+++.++.++++||+|||++++.+
T Consensus       265 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~  342 (479)
T PRK10077        265 LMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG  342 (479)
T ss_pred             cch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHh
Confidence            110  111122222333444455566677888999888888877777777788889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHH
Q psy17628        176 DICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF  255 (338)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~  255 (338)
                      .++.+++.+.+.......        ...........++..+.+..+.+..+.+++|.+|++.|++++|+.+..++++..
T Consensus       343 ~~~~~v~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~  414 (479)
T PRK10077        343 ALGMAIGMFSLGTAFYTQ--------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANY  414 (479)
T ss_pred             HHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHH
Confidence            988888777665432111        111222333444444454455566668999999999999999999999999998


Q ss_pred             HHHHHHHHHH------HhcccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHHHHhc
Q psy17628        256 VVVKTFDDVE------RAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELS  308 (338)
Q Consensus       256 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (338)
                      +++.+.+.+.      +..++...+++.+++++++.++.+++.||+++++.+|.++..+
T Consensus       415 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  473 (479)
T PRK10077        415 FVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE  473 (479)
T ss_pred             HHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHh
Confidence            8877776443      4677777788888777777777777789999988877665543

>KOG0253|consensus

Probab=99.94  E-value=1.2e-25  Score=178.10  Aligned_cols=279  Identities=14%  Similarity=0.145  Sum_probs=189.9

Q ss_pred             Cceechhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcc----
Q psy17628          1 MVVSGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYD----   70 (338)
Q Consensus         1 ~~~~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~----   70 (338)
                      +|++|.+....+.+.      |||.....   + .++.++....+++||||||...++++++|.+.++++.+.|..    
T Consensus       208 ~waig~v~ea~law~vm~~~gwr~~l~~~---~-~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlpl  283 (528)
T KOG0253|consen  208 FWAIGQVFEALLAWGVMSNFGWRYLLFTS---S-TPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPL  283 (528)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHH---H-hHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCc
Confidence            477888888887776      99999988   4 777767888899999999999999999999999998765431    


Q ss_pred             ------hHHHHHHH----HHHH-HHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhcc----
Q psy17628         71 ------IHGELDEL----QKEL-DIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATN----  135 (338)
Q Consensus        71 ------~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----  135 (338)
                            ...+.++.    .+.+ +..++......+++. |+.++..+.....++...+. ++........+++...    
T Consensus       284 gvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~  361 (528)
T KOG0253|consen  284 GVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPL  361 (528)
T ss_pred             ceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCcccc
Confidence                  11111111    1111 111223345566665 44777777777766665554 3333333333332211    


Q ss_pred             ----------------CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        136 ----------------SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       136 ----------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                                      .+...-..-..+..+..+.|.++.+++.||+|||+.+....++++++.+++...          
T Consensus       362 ~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c----------  431 (528)
T KOG0253|consen  362 YNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC----------  431 (528)
T ss_pred             chhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh----------
Confidence                            011111223456778889999999999999999999999998888887766543          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                        .......+..+..-.+.+.++... |+|..|++|+..|+++.|.+...+.+|+++.|.+.  +........+..+++.
T Consensus       432 --~~rn~~tvllf~arafisg~fqva-YvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~  506 (528)
T KOG0253|consen  432 --KTRNAYTVLLFTARAFISGAFQVA-YVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGA  506 (528)
T ss_pred             --cCcchhHHHHHHHHHHHhchheEE-EEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHH
Confidence              112223334444445555555544 59999999999999999999999999999999877  4443444567778888


Q ss_pred             HHHHHHHHHHhhccCCCCCCH
Q psy17628        280 YCIIGTFFVYFVVPETKNKSL  300 (338)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~  300 (338)
                      +++++.+...++--||+++..
T Consensus       507 ~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  507 LFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             HHHHHHHHheeeeeccCCCCC
Confidence            888888777665568888753

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.93  E-value=1.1e-23  Score=185.53  Aligned_cols=292  Identities=29%  Similarity=0.449  Sum_probs=194.7

Q ss_pred             eechhhhhhhc---ch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHH
Q psy17628          3 VSGILYTYVIG---SL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHG   73 (338)
Q Consensus         3 ~~G~~~~~~i~---~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~   73 (338)
                      .+|.++++.++   ..      ||+.|++.   ++..+ ..++..+++||+|+++..+++.+++++..++....+.....
T Consensus       173 ~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~---~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (481)
T TIGR00879       173 TFGILVAYGFGSGKVSLNNTLGWRIPLGLQ---LIPAG-LLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKE  248 (481)
T ss_pred             HHHHHHHHHHHHHhhcCCCCccHHHHHHHH---HHHHH-HHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHH
Confidence            45667777766   22      99999998   54444 45666778899999888777777766665555443322211


Q ss_pred             HHHHH---HHHHH-HhhhhhhHHHHHHhCcc-chHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHH
Q psy17628         74 ELDEL---QKELD-IQAQKKKSLVEIYSNKA-TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIV  148 (338)
Q Consensus        74 ~~~~~---~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (338)
                      ..+..   +.... +.+..+..+.+.++..+ ..++.++...+..+...........+.|.+.++.|++..+.+......
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  328 (481)
T TIGR00879       249 LLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIV  328 (481)
T ss_pred             HHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHH
Confidence            11111   00000 00011112333433221 233444444444544444455677888988888898888888888889


Q ss_pred             HHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhccccccccee
Q psy17628        149 GFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGV  228 (338)
Q Consensus       149 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      .++.+++.++.|+++||+|||+.+..+..+.+++.+++..........  .........+....++..+.+.+..+..+.
T Consensus       329 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (481)
T TIGR00879       329 GAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG--SSKSSGNVAIVFILLFIAFFAMGWGPVPWV  406 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC--cccchhHHHHHHHHHHHHHHHccccCeehh
Confidence            999999999999999999999999988777777766655322111110  000012233333444445555556666667


Q ss_pred             eeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCCCCH
Q psy17628        229 MMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL  300 (338)
Q Consensus       229 ~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (338)
                      ++.|.+|++.|++++++.+...++++++++.+.+.+.+..+|+..|++.++++++++++.+++.||+++++.
T Consensus       407 ~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~  478 (481)
T TIGR00879       407 IVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL  478 (481)
T ss_pred             hhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence            789999999999999999999999999999999999998999999999888888888777777788776554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=99.93  E-value=2.5e-24  Score=190.55  Aligned_cols=273  Identities=18%  Similarity=0.203  Sum_probs=173.5

Q ss_pred             eechhhhhhhcch---hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchH-HHHHHH
Q psy17628          3 VSGILYTYVIGSL---YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIH-GELDEL   78 (338)
Q Consensus         3 ~~G~~~~~~i~~~---Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~-~~~~~~   78 (338)
                      .+|.++++.++..   ||+.|++.   +++.++ ..+..+++||||+|+..+++.+++++.+++..+.+.... .+....
T Consensus       226 ~~g~~~~~~~~~~~~~wr~~~~~~---~i~~~~-~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  301 (505)
T TIGR00898       226 SLGLVLLPLVAYFIPDWRWLQLAV---SLPTFL-FFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSL  301 (505)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHH---HHHHHH-HHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhh
Confidence            4566666666655   99999999   666555 445557899999999999999999988887765433211 111111


Q ss_pred             H-HHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHH
Q psy17628         79 Q-KELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTF  157 (338)
Q Consensus        79 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  157 (338)
                      + ++...+++++.+++++++++..++..+......+.... .++.    .+....+.+.+   ........++..+++.+
T Consensus       302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~---~~~~~~~~~~~~i~~~~  373 (505)
T TIGR00898       302 SLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF-SYYG----LVLDLGNLGGN---IYLDLFISGLVELPAKL  373 (505)
T ss_pred             hhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH-HHHH----HhccccccCCC---hHHHHHHHHHHHHHHHH
Confidence            1 11111112234678888887655554443333322111 1111    22222233322   33445566788889999


Q ss_pred             HHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch
Q psy17628        158 FSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD  237 (338)
Q Consensus       158 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  237 (338)
                      +.++++||+|||+.+.++.++.+++.+++....          ....+.......+..++.+..+ +..+.+.+|.+|++
T Consensus       374 ~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~  442 (505)
T TIGR00898       374 ITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP----------VDLYFLRTALAVLGKFGITSAF-QMVYLYTAELYPTV  442 (505)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC----------CCchHHHHHHHHHHHHHHHHHH-HHHHHHhcccccHH
Confidence            999999999999999998888777766554430          0111222333333333333333 33347889999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCCCCHH
Q psy17628        238 VKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQ  301 (338)
Q Consensus       238 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (338)
                      .|++++|+.+..+.+|+.++|.+.+ + +..++..++.+++++.+++.++. +++|||++++++
T Consensus       443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~  503 (505)
T TIGR00898       443 VRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLP  503 (505)
T ss_pred             HHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCC
Confidence            9999999999999999999999888 3 44455567777777776666554 458999887654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.89  E-value=3.9e-22  Score=175.28  Aligned_cols=245  Identities=15%  Similarity=0.153  Sum_probs=146.9

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||++|++.   +++.++ .++.+..+||||+|...+++.++..+       +             .  ..+.++.+++++
T Consensus       191 WR~~f~i~---~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~~-------~-------------~--~~~~~~~~~~~~  244 (490)
T PRK10642        191 WRIPFFIA---LPLGII-GLYLRHALEETPAFQQHVDKLEQGDR-------E-------------G--LQDGPKVSFKEI  244 (490)
T ss_pred             HHHHHHHH---HHHHHH-HHHHHHcCCCChhHHHHHHhhhhhcc-------c-------------c--ccccccCCHHHH
Confidence            99999998   554443 55667789999987543221111000       0             0  000112345566


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  174 (338)
                      +++  .++.........++ ....++....|.|.++++ .|++..+.........++..++.++.|+++||+|||+.+..
T Consensus       245 ~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  321 (490)
T PRK10642        245 ATK--HWRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVIL  321 (490)
T ss_pred             HHH--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            653  22333333222222 223456677889998865 48877777777777788889999999999999999998887


Q ss_pred             HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (338)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (338)
                      +.+...+..+.+....  .       .......+....+.+++.+...+... .+.+|.+|++.|++++|+.+..+.+++
T Consensus       322 ~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~g~~~~~~~g~~~-~~~~~~~p~~~Rg~~~g~~~~~~~~~g  391 (490)
T PRK10642        322 GSVALFVLAIPAFILI--N-------SNVIGLIFAGLLMLAVILNCFTGVMA-STLPAMFPTHIRYSALAAAFNISVLVA  391 (490)
T ss_pred             HHHHHHHHHHHHHHHH--h-------CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCccchHHHHHHHHHHHHHH
Confidence            7654443332211110  0       00112222233333333333333333 577899999999999998877788888


Q ss_pred             HHHHHHHHHHHHhcc-cceeehhhhHHHHHHHHHHHhhccCCCCCCH
Q psy17628        255 FVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKNKSL  300 (338)
Q Consensus       255 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (338)
                      .++|.+.+.+.+..+ |+.++++..+.++++.+ ..+++||++++..
T Consensus       392 ~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~~  437 (490)
T PRK10642        392 GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGVTMKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHHhccccCCCC
Confidence            899999998877654 44455544444444444 3445799866533

>KOG0252|consensus

Probab=99.88  E-value=5.4e-23  Score=167.86  Aligned_cols=271  Identities=18%  Similarity=0.164  Sum_probs=177.6

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcC-ChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhh---hH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKK-RRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKK---KS   91 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~   91 (338)
                      ||..|.+.    .++.+..+..+..+|||+||-.... +.+.+.   ++..++...   +.++.++.....+.++   ..
T Consensus       224 WRl~~glg----~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~~---~~~~~~~~~~~~~~~~~~~~~  293 (538)
T KOG0252|consen  224 WRIIFGLG----AVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLSV---DIEAESTAESDVPPPSNSFGL  293 (538)
T ss_pred             HHHHHHHH----HHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccccccc---ccchhhccccCCCCcccccch
Confidence            99999999    6666657888889999999863322 222222   111111111   1111111001111111   12


Q ss_pred             HHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcch---------hhHHHHHHHHHHHHHHHHh
Q psy17628         92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNY---------GQNIVGFIQVIMTFFSSLL  162 (338)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~g~l  162 (338)
                      +...+..+ +-++++.....++. .-...+....+...+++..|+.+.+...         -..+..++.++|..+...+
T Consensus       294 F~~~f~~~-hg~~Llgt~~~WFl-lDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~  371 (538)
T KOG0252|consen  294 FSRLFLRW-HGKHLLGTAGTWFL-LDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYF  371 (538)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHh-hhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEE
Confidence            33333332 33444444444444 3344667778888888888876655443         1112233334466677788


Q ss_pred             hhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhH
Q psy17628        163 VDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLA  242 (338)
Q Consensus       163 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  242 (338)
                      +|++|||++.+.+++++.+..+.++..+....        ......++..+..++...+.......+.+|.||++.|+++
T Consensus       372 id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~--------~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~  443 (538)
T KOG0252|consen  372 IDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE--------NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTC  443 (538)
T ss_pred             eehhhhHHHHHhhHHHHHHHHHHHcCCccccc--------ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhh
Confidence            99999999999999999988877776533111        2234455556666677788888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----hcccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q psy17628        243 LGVICILGSLIEFVVVKTFDDVER-----AFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDEL  307 (338)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (338)
                      .|+....+.+|+.++...+.++.+     ..+.+..+++++.+.++..++.++ +|||+++++++.+.+.
T Consensus       444 hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l-~pEtk~~~leei~~e~  512 (538)
T KOG0252|consen  444 HGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL-IPETKGKSLEEISNEE  512 (538)
T ss_pred             hhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE-eecccccCHHHhcChh
Confidence            999999999999999999999888     667778888888888877755544 7899999998874433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.86  E-value=3.6e-21  Score=156.28  Aligned_cols=245  Identities=16%  Similarity=0.170  Sum_probs=157.0

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHh--hhhhhHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQ--AQKKKSLV   93 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   93 (338)
                      ||..|++.   ++++++++++.++.++|+|+-.   +-.     .+++.+++..+..      +++++.+  ...+.-.+
T Consensus       184 w~~~f~~p---giiaiival~~~~~~rd~Pqs~---GLP-----~ie~~~~d~~e~~------~~~~~~~~ls~~~i~~~  246 (448)
T COG2271         184 WRAAFYFP---GIIAIIVALILLFLLRDRPQSE---GLP-----PIEEYRGDPLEIY------EEEKENEGLTAWQIFVK  246 (448)
T ss_pred             hhHHHHHH---HHHHHHHHHHHHHHhCCCcccc---CCC-----CHHHhhcCchhhh------hhhccCCCccHHHHHHH
Confidence            99999999   9999999999999999999521   110     0000111100000      0000000  01111233


Q ss_pred             HHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc--CCch
Q psy17628         94 EIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRP  170 (338)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~  170 (338)
                      -+++||     .++...+........-+.+..|.|.|+.+. |+|..++++..+.+-.+.++|++++|+++||+  |||.
T Consensus       247 YVL~Nk-----~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~  321 (448)
T COG2271         247 YVLKNK-----LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG  321 (448)
T ss_pred             HHHcCh-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc
Confidence            455665     344444444444444778999999999887 99999999999999999999999999999995  6776


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHH
Q psy17628        171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG  250 (338)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  250 (338)
                      ...+...+....+++...   ...      +.+.+...+++...++... +...+......|..|.+.-|++.|+...++
T Consensus       322 p~~~i~~~~i~~~~~~~w---~~~------~~~~~l~~~~l~~iGf~Iy-GPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~  391 (448)
T COG2271         322 PMALIFMLLITASLVLYW---LAP------NGSYLLDAILLFIIGFLIY-GPQMLIGLAAAEFVPKKAAGTATGFVGLFA  391 (448)
T ss_pred             hHHHHHHHHHHHHHHHHH---cCC------CccHHHHHHHHHHHHHHHh-hHHHHHHHHHhccccHhhccchhchhhhHH
Confidence            654443333222222111   110      1122333333333333322 222333357799999999999999999999


Q ss_pred             HH-HHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhc
Q psy17628        251 SL-IEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV  292 (338)
Q Consensus       251 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (338)
                      .+ |...+....+.+.|.+||...|.++.+.++++.++.....
T Consensus       392 Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         392 YLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             HHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            99 7888888889888989999999888777777766655544

>KOG0255|consensus

Probab=99.84  E-value=5.1e-19  Score=157.08  Aligned_cols=281  Identities=19%  Similarity=0.194  Sum_probs=180.0

Q ss_pred             echhhhhhhcch---hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCC---cchHHHHHH
Q psy17628          4 SGILYTYVIGSL---YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPN---YDIHGELDE   77 (338)
Q Consensus         4 ~G~~~~~~i~~~---Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~---~~~~~~~~~   77 (338)
                      .|.+.....+.+   ||+.+++.   .+.+++ .++.+++.||||||+..+++.+++.+.++++.+.|   .......+.
T Consensus       218 ~~~~~~~~~a~~~~~Wr~~~~~~---~~~~~~-~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~  293 (521)
T KOG0255|consen  218 GGLMLPAGAAYITRDWRWLFWII---SIPSGL-FLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRL  293 (521)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHH---HHHHHH-HHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHH
Confidence            344444444444   99999999   555555 44557777899999999999999999999987643   222222211


Q ss_pred             H---HHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHH
Q psy17628         78 L---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVI  154 (338)
Q Consensus        78 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  154 (338)
                      .   ++......+++..+.++++.+..++..+...+.++....     ..+-.+......|   .+........+.....
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~-----~y~gl~~~~~~lg---~~~~~~~~~~~~~~~p  365 (521)
T KOG0255|consen  294 ELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSL-----VYYGLSLNVSGLG---GNIYLNFTLSGLVELP  365 (521)
T ss_pred             HHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhH-----HHHhhhhhhhhcC---chHHHHHHHHHHHHhh
Confidence            1   111111122335678888887666666665555532211     1111112222222   2334455555667778


Q ss_pred             HHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC
Q psy17628        155 MTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF  234 (338)
Q Consensus       155 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  234 (338)
                      +....+...|++|||.....+..+..++++..++.....         ..+...+...+..++.+.++... +.+.+|++
T Consensus       366 ~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~  435 (521)
T KOG0255|consen  366 AYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL---------GGWLHWILPLLGKFFIGSAFNLI-FLYSAELI  435 (521)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc---------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Confidence            888889999999999999999999999888877752211         10133344444444555555555 48999999


Q ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q psy17628        235 TPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDEL  307 (338)
Q Consensus       235 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (338)
                      |+..|..+.+.......+++.++|.+...... ......+.+++.+..+.+.+...++|||+++.+.+..++.
T Consensus       436 pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~  507 (521)
T KOG0255|consen  436 PTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDA  507 (521)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHH
Confidence            99999999999999999999888877643333 2322333334666677776776789999998876554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.83  E-value=9e-20  Score=158.09  Aligned_cols=165  Identities=13%  Similarity=0.091  Sum_probs=107.6

Q ss_pred             hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc--CCchHH-HHHhHHHHHHHHHHHHHHHHhhc
Q psy17628        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPLL-LISDICMAICIGALGYYFYLLKL  195 (338)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~-~~~~~~~~~~~~~~~~~~~~~~~  195 (338)
                      ......+.|.++.+ .|++..+.+...+...++..++.++.|+++||+  ++|+.. ........+....+...  . . 
T Consensus       259 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~--~-~-  334 (434)
T PRK11663        259 RAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM--P-F-  334 (434)
T ss_pred             HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc--c-c-
Confidence            44566788888854 599998989999999999999999999999998  333332 22211111111111111  0 0 


Q ss_pred             ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628        196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFG  275 (338)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (338)
                            .............+++ ..+..........|.+|++.|++++|+.+..+.++..++|.+.+.+.+..||...+.
T Consensus       335 ------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~  407 (434)
T PRK11663        335 ------ASYVMQAACFFTIGFF-VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFV  407 (434)
T ss_pred             ------ccHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHH
Confidence                  0111111112222211 111111222456899999999999999999999999999999999999999988888


Q ss_pred             hhhHHHHHHHHHHHhhccCC
Q psy17628        276 TFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~  295 (338)
                      ..+++.++.++..+...++.
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~  427 (434)
T PRK11663        408 VISIAAGISALLLLPFLNAQ  427 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            88877777766555544443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.81  E-value=2.1e-18  Score=152.54  Aligned_cols=151  Identities=13%  Similarity=0.058  Sum_probs=106.3

Q ss_pred             HHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        122 VVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       122 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      ....+.|.+++ +.|++..+.+...+...++.+++.++.|+++||+|||+.+..+..+..+..+.....   .       
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~-------  362 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI---G-------  362 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc---c-------
Confidence            35567888885 669999999999999999999999999999999999999887765555443322221   0       


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY  280 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (338)
                      ....+.......+.+ +.+.+..+....++.|.+|++.|++++|+.+....+++.++|.+.+.+.+..|++..+...+.+
T Consensus       363 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        363 GANVWVLGLLLFFQQ-MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             ccHHHHHHHHHHHHH-HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            001111111112111 1222223333367889999999999999999999999999999999999988887666554444


Q ss_pred             HHH
Q psy17628        281 CII  283 (338)
Q Consensus       281 ~~~  283 (338)
                      ..+
T Consensus       442 ~~~  444 (496)
T PRK03893        442 LTF  444 (496)
T ss_pred             HHH
Confidence            333

>PRK09952 shikimate transporter; Provisional

Probab=99.81  E-value=1.5e-18  Score=150.51  Aligned_cols=166  Identities=12%  Similarity=0.027  Sum_probs=102.8

Q ss_pred             hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      .+....|.|.+.++ .|++...........++..+++.++.|+++||+|||+.+..+.++..++.+.+....  ...   
T Consensus       266 ~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~---  340 (438)
T PRK09952        266 MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL--EAQ---  340 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HcC---
Confidence            45566677777654 477665444455566777788889999999999999998877665544433222211  000   


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhcc--cceeeh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGS-LIEFVVVKTFDDVERAFG--TGVAFG  275 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~  275 (338)
                         +.....+....+.+++.+..... .+++++|.+|++.|+++.++.+..+. +++.++|.+.+.+.+..+  |...+.
T Consensus       341 ---~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~  416 (438)
T PRK09952        341 ---SIFWIVFFSIMLANIAHDMVVCV-QQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAI  416 (438)
T ss_pred             ---ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence               01112222222323333333333 34788999999999999999777655 788899999999888553  444555


Q ss_pred             hhhHHHHHHHHHHHhhccCC
Q psy17628        276 TFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~  295 (338)
                      ..+++.+++.+. .+.++|+
T Consensus       417 ~~~~~~~i~~v~-~~~~~~~  435 (438)
T PRK09952        417 YLLAGCLISAMT-ALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHH-HHHcccc
Confidence            555555554443 3445654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.81  E-value=1.2e-18  Score=150.29  Aligned_cols=138  Identities=10%  Similarity=0.028  Sum_probs=102.5

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      .+....+.|.++++.|++..+.+.......++.+++.++.|+++||+|||+.+..+.....++.+.+...          
T Consensus       236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----------  305 (406)
T PRK11551        236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA----------  305 (406)
T ss_pred             HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc----------
Confidence            4456678899998889999999999999999999999999999999999998887655555544433221          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT  270 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (338)
                        ...+...+...+.+.+... ..+..+++..|.+|++.|++++|+.+....++..++|.+.+.+.+..+.
T Consensus       306 --~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~  373 (406)
T PRK11551        306 --PSFAGMLLAGFAAGLFVVG-GQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRS  373 (406)
T ss_pred             --CcHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCc
Confidence              0112222223333333322 2333447889999999999999999999999999999999998886554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.81  E-value=1.7e-18  Score=149.59  Aligned_cols=169  Identities=11%  Similarity=0.065  Sum_probs=124.7

Q ss_pred             HHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        122 VVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      ....+.|.+.++ .|.+..+.++......++.+++.++.+++.||.++++.+..+..+.+++.+.+...           
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------  309 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-----------  309 (417)
T ss_pred             hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-----------
Confidence            455677888888 68888888999999999999999999999999887777777766666655444322           


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY  280 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (338)
                       .+.+...+...+.+.+.+.. .+...+++.|..|++.||+++|+.+....++..+++.+.+.+.+..|.+..+...+.+
T Consensus       310 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~  387 (417)
T PRK10489        310 -PMWILAVLCLALFGYLSAIS-SLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFG  387 (417)
T ss_pred             -chHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHH
Confidence             11122233333344333322 2333367889999999999999999999999999999999999998987778777777


Q ss_pred             HHHHHHHHHhhccCCCCCCHHHH
Q psy17628        281 CIIGTFFVYFVVPETKNKSLQQI  303 (338)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~  303 (338)
                      ..+..++.....+++++++.+|.
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~  410 (417)
T PRK10489        388 LLIIGVLLLLVLGELRRFRQTPP  410 (417)
T ss_pred             HHHHHHHHHHhcccccccccccc
Confidence            77777677776788777655443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.81  E-value=6.3e-19  Score=154.29  Aligned_cols=159  Identities=13%  Similarity=-0.004  Sum_probs=108.2

Q ss_pred             hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ......|.|.++++ .|++..+.+.......++.+++.+++|+++||+|||+.+........++...+...   .     
T Consensus       274 ~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~---~-----  345 (467)
T PRK09556        274 RIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ---H-----  345 (467)
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH---h-----
Confidence            45577889988865 59999888889888999999999999999999999987765544333322211111   0     


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHH-----------
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL-IEFVVVKTFDDVER-----------  266 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------  266 (338)
                        ..+.....+...+.+.+.. +..........|.+|++.||++.|+.+..+++ ++.++|.+.|.+.+           
T Consensus       346 --~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~  422 (467)
T PRK09556        346 --ATSEYMYLASLFALGFLVF-GPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGY  422 (467)
T ss_pred             --cCcHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccc
Confidence              0111222233333332221 11111124556999999999999999999997 66899999999999           


Q ss_pred             -hcccceeehhhhHHHHHHHHHHH
Q psy17628        267 -AFGTGVAFGTFAVYCIIGTFFVY  289 (338)
Q Consensus       267 -~~~~~~~~~~~~~~~~~~~~~~~  289 (338)
                       ..+|+..|.+..++.+++.+..+
T Consensus       423 ~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        423 TLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             cccChHHHHHHHHHHHHHHHHHHH
Confidence             56787778777666666654444

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.80  E-value=3.7e-18  Score=148.11  Aligned_cols=168  Identities=16%  Similarity=0.134  Sum_probs=110.7

Q ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch
Q psy17628         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP  170 (338)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~  170 (338)
                      ++++.++++..+. ........+ ......+....+.|.++++.|++..+.+...+...++.+++.++.|+++||+|||+
T Consensus       220 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  297 (426)
T PRK12307        220 SMKGLFNRAQFPL-TLCVFIVLF-SIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK  297 (426)
T ss_pred             HHHHHHhhchHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            4566777663332 222222222 12222334566788888888888888888888899999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhh-cccccccceeeeeccCCchhhhhHHHHHHHH
Q psy17628        171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVF-SVGFGPIPGVMMGELFTPDVKGLALGVICIL  249 (338)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  249 (338)
                      .+..+.++..+..+.....   .        ..... .+...+++.+. ..+..+....++.|.+|++.|++++|+.+..
T Consensus       298 ~~~~~~~~~~~~~~~~~~~---~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  365 (426)
T PRK12307        298 TFSIGLLMSFLFIFPLFRI---P--------QDNYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNL  365 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHH---c--------cccHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHH
Confidence            9888776655544333221   0        01111 11122222211 1222233336778999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccce
Q psy17628        250 GSLIEFVVVKTFDDVERAFGTGV  272 (338)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~  272 (338)
                      +.+++.++|.+.+.+.+..|...
T Consensus       366 ~~~~~~~gp~~~g~l~~~~g~~~  388 (426)
T PRK12307        366 AATSGTFNSMAATWLGITMGLGA  388 (426)
T ss_pred             HhHHHHHHHHHHHHHHHcccHHH
Confidence            99999999999999988877543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.80  E-value=5.9e-18  Score=139.31  Aligned_cols=231  Identities=18%  Similarity=0.216  Sum_probs=159.7

Q ss_pred             eechhhhhhhcch--hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHH
Q psy17628          3 VSGILYTYVIGSL--YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQK   80 (338)
Q Consensus         3 ~~G~~~~~~i~~~--Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~   80 (338)
                      .+|..++..++.+  ||+.|+..   +.++++..+..+..+|  |+-.  ++                            
T Consensus       151 v~GvPLGt~ig~~~GWR~~F~~i---a~l~ll~~~~~~~~lP--~~~~--~~----------------------------  195 (394)
T COG2814         151 VLGVPLGTFLGQLFGWRATFLAI---AVLALLALLLLWKLLP--PSEI--SG----------------------------  195 (394)
T ss_pred             HHhccHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHhCC--CccC--CC----------------------------
Confidence            3566777777777  99999999   9999998888899999  2100  00                            


Q ss_pred             HHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHH
Q psy17628         81 ELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFS  159 (338)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  159 (338)
                         +.+.+..+..+.+++|+.+...     ......+.+.+...+|...++++. |++....++....++++.++|+.++
T Consensus       196 ---~~~~~~~~~~~~l~~p~v~~~l-----~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~g  267 (394)
T COG2814         196 ---SLPGPLRTLLRLLRRPGVLLGL-----LATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLG  267 (394)
T ss_pred             ---CCCcchhHHHHHhcCchHHHHH-----HHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence               0001112345667777433332     223333445667777777777766 9999999999999999999999999


Q ss_pred             HHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhh
Q psy17628        160 SLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK  239 (338)
Q Consensus       160 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  239 (338)
                      |+++|| +.|+.+.....+.++..+.+.+.           ..+.+.......+.++.......... ...++ .-++.+
T Consensus       268 Grl~dr-~~~~~l~~~~~l~a~~~l~l~~~-----------~~~~~~~~~~~~~wg~a~~~~~~~~~-~~~a~-~~p~~~  333 (394)
T COG2814         268 GRLADR-GPRRALIAALLLLALALLALTFT-----------GASPALALALLFLWGFAFSPALQGLQ-TRLAR-LAPDAA  333 (394)
T ss_pred             hhhccc-cchhHHHHHHHHHHHHHHHHHHh-----------cchHHHHHHHHHHHHHHhhhhhhHHH-HHhcc-cCCCch
Confidence            999999 88888888877777777665554           11222333333332222222222222 34455 335778


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHh
Q psy17628        240 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF  290 (338)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (338)
                      ..+.+++....++|..++..+.+...++.|+....++.+.+.+++.++...
T Consensus       334 ~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         334 DLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888888777777777665554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.79  E-value=4e-18  Score=148.63  Aligned_cols=161  Identities=15%  Similarity=0.097  Sum_probs=104.2

Q ss_pred             hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc--CCchHHHH-HhHHHHHHHHHHHHHHHHhhc
Q psy17628        120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPLLLI-SDICMAICIGALGYYFYLLKL  195 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~-~~~~~~~~~~~~~~~~~~~~~  195 (338)
                      .+....|.|.++++. |++..+.+....+..++.+++.++.|+++||+  +||....+ ...+..++.+.+...   .. 
T Consensus       269 ~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~---~~-  344 (452)
T PRK11273        269 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN---PA-  344 (452)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh---cc-
Confidence            445677899999874 88888888888888899999999999999999  45543222 222222222111110   00 


Q ss_pred             ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHhcccceee
Q psy17628        196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFV-VVKTFDDVERAFGTGVAF  274 (338)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  274 (338)
                            .......+.....+.... +.......+..|.+|++.||+++|+.+..+.+++.+ +|.+.+.+.+..|++..|
T Consensus       345 ------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f  417 (452)
T PRK11273        345 ------GNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF  417 (452)
T ss_pred             ------cChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHH
Confidence                  011112222222222211 111112245679999999999999999998888765 688999999999998888


Q ss_pred             hhhhHHHHHHHHHHHhh
Q psy17628        275 GTFAVYCIIGTFFVYFV  291 (338)
Q Consensus       275 ~~~~~~~~~~~~~~~~~  291 (338)
                      .+.+++++++++....+
T Consensus       418 ~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        418 MVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            87777777766555543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.79  E-value=4.9e-18  Score=143.28  Aligned_cols=227  Identities=14%  Similarity=0.159  Sum_probs=134.2

Q ss_pred             echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (338)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~   77 (338)
                      +|.++++.++..      ||+.|++.   ++++++..++.++++||+|++..   +.              .+.    + 
T Consensus       125 lG~~l~~~~~~~l~~~~gWr~~f~~~---~~l~~~~~~~~~~~lp~~p~~~~---~~--------------~~~----~-  179 (368)
T TIGR00903       125 LGIIFALAAGLKIYTAGGLQLLIIPI---AAVAAAGIILVLAALPALPFQAA---EG--------------FGF----K-  179 (368)
T ss_pred             HHHHHHHHHHHHHHHccchHHHHHHH---HHHHHHHHHHHHHHcCCCCCCCC---CC--------------cch----H-
Confidence            455555555444      99999998   78888877788888999986421   00              000    0 


Q ss_pred             HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHH
Q psy17628         78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTF  157 (338)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  157 (338)
                        +       ...+++++++++..+     ...+..+.....++.+..|.|.++++.|++.. .+....+..+   .+.+
T Consensus       180 --~-------~~~~~~~ll~~~~~~-----~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~---~g~~  241 (368)
T TIGR00903       180 --D-------AVKEFGALAGRKDLW-----IIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAIL---AGLI  241 (368)
T ss_pred             --H-------HHHHHHHHHcChhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHH---HHHH
Confidence              0       011356778776432     22222333333466778899999988887654 4444444444   4444


Q ss_pred             HHHHhhhhcCCc---hHHHH-HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeecc
Q psy17628        158 FSSLLVDKAGRR---PLLLI-SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL  233 (338)
Q Consensus       158 ~~g~l~d~~grr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  233 (338)
                      ..++++||..||   +.... .....++........            ......+....+.+++..... +..+++.+|.
T Consensus       242 g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~  308 (368)
T TIGR00903       242 GVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE------------LNRLALFAFIGIAGLLMLPAY-AIIMDWIGKF  308 (368)
T ss_pred             HHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc------------cccHHHHHHHHHHHHhhhhhH-HHHHHHHHHh
Confidence            457888887654   33222 222222222222111            011222223333333333222 3344788999


Q ss_pred             CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHH
Q psy17628        234 FTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV  288 (338)
Q Consensus       234 ~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (338)
                      +|++.|++++|+.+..+++++..+|.+.+.+..  +....|.++++..+++++..
T Consensus       309 ~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       309 CDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             cchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998887763  54456777776666666554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.78  E-value=3.9e-18  Score=146.50  Aligned_cols=260  Identities=17%  Similarity=0.147  Sum_probs=149.5

Q ss_pred             eechhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHH
Q psy17628          3 VSGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELD   76 (338)
Q Consensus         3 ~~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~   76 (338)
                      .+|.++++.++..      ||+.|++.   +++.++..++.+++.||+|+.... .+.++.....++...+         
T Consensus       128 ~~g~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------  194 (399)
T TIGR00893       128 GLGGIIGGPLVGWILIHFSWQWAFIIE---GVLGIIWGVLWLKFIPDPPQKAKW-LTEEEKYIVVGGLLAE---------  194 (399)
T ss_pred             hHHHHHHHHHHHHHHHhCCchHHHHHH---HHHHHHHHHHhhheecCCCCcccc-CCHHHHhhcchhhccc---------
Confidence            4556666655543      99999999   777777666667777887641100 0111100000000000         


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHH
Q psy17628         77 ELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIM  155 (338)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~  155 (338)
                        .+..++++..+.+.++.++++..+     ...+..+...........+.|.++++ .|.+..+.+.......++.+++
T Consensus       195 --~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (399)
T TIGR00893       195 --QQGKGPSTPKKYQIKELLKDRRVW-----GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIG  267 (399)
T ss_pred             --cccccccCCCccchHHHhcCHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHH
Confidence              000011112233456666665322     22222222233355667778887765 4888888899999999999999


Q ss_pred             HHHHHHhhhhcCCchHHHH-HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC
Q psy17628        156 TFFSSLLVDKAGRRPLLLI-SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF  234 (338)
Q Consensus       156 ~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  234 (338)
                      .++.|+++||++||+.... ......++.+...........      .............+.+ +.+..+..++++.|.+
T Consensus       268 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  340 (399)
T TIGR00893       268 MILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY------VNIPYAALALVALGFF-GLGAGAIGWALISDNA  340 (399)
T ss_pred             HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc------chhHHHHHHHHHHHHh-chhhhhHHHHHHHhhc
Confidence            9999999999999962111 111111111111111111000      0111122222222222 2224555568899999


Q ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cceeehhhhHHHHHHHHHHH
Q psy17628        235 TPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVY  289 (338)
Q Consensus       235 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  289 (338)
                      |++.|++++|+.+....++..++|.+.+.+.+..| +...+.+.+++.+++.+..+
T Consensus       341 ~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       341 PGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888 77777766666666554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.78  E-value=5.3e-18  Score=144.71  Aligned_cols=151  Identities=14%  Similarity=0.078  Sum_probs=110.6

Q ss_pred             HHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhh
Q psy17628        123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG  202 (338)
Q Consensus       123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (338)
                      ...+.+.+.++.|.+..+.+.......++.+++.++.|+++||+|||+.+..+..+..++.+.+....          ..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----------~~  293 (377)
T TIGR00890       224 LIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP----------ML  293 (377)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc----------cc
Confidence            34455666677787777788888899999999999999999999999998888777777665544320          00


Q ss_pred             hchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHH
Q psy17628        203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCI  282 (338)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (338)
                      ..........+.+.+.+....... .++.|.+|+++|+++.|+.+....++..++|.+.+.+.+..||+..+.+.+++.+
T Consensus       294 ~~~~~~~~~~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~  372 (377)
T TIGR00890       294 NDVLFLATVALVFFTWGGTISLFP-SLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFAL  372 (377)
T ss_pred             hhHHHHHHHHHHHHHhccchhccH-HHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Confidence            111222223333334433333333 6788999999999999999999999999999999999999998877777666555


Q ss_pred             HH
Q psy17628        283 IG  284 (338)
Q Consensus       283 ~~  284 (338)
                      ++
T Consensus       373 ~~  374 (377)
T TIGR00890       373 TS  374 (377)
T ss_pred             Hh
Confidence            44

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.77  E-value=3e-18  Score=148.85  Aligned_cols=251  Identities=14%  Similarity=0.089  Sum_probs=143.0

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhH-HHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKS-LVE   94 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   94 (338)
                      ||+.|++.   +++.++..++.++++||+|+....+ +.++.       +++..+...+      +.+.+.+.+.. .+.
T Consensus       184 w~~~f~~~---~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~------~~~~~~~~~~~~~~~  246 (438)
T TIGR00712       184 WHAALYFP---AICAIIVALFAFAMMRDTPQSCGLP-PIEEY-------RNDYPDDYNE------KAEQELTAKEIFMQY  246 (438)
T ss_pred             hHHHHHHH---HHHHHHHHHHHHHhccCCHHhcCCC-Cchhc-------cccccccccc------ccccccchHHHHHHH
Confidence            99999999   7777776677777889988632110 00000       0000000000      00000001111 123


Q ss_pred             HHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHH
Q psy17628         95 IYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL  173 (338)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~  173 (338)
                      .++++..+...+     ..+......+....|.|.++++. |++..+.++...+..+..+++.+++|+++||+++++...
T Consensus       247 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  321 (438)
T TIGR00712       247 VLPNKLLWYIAI-----ANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA  321 (438)
T ss_pred             HccCchHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH
Confidence            455553222211     11112222456677889998875 889888899999999999999999999999996543222


Q ss_pred             HHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHH
Q psy17628        174 ISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI  253 (338)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~  253 (338)
                      .+.....+..+..... .....      .+.+.........+.+.. +..........|.+|++.|++++|+.+..+.++
T Consensus       322 ~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  393 (438)
T TIGR00712       322 TGVFFMTLVTIAVIVY-WMNPA------GNPLVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG  393 (438)
T ss_pred             HHHHHHHHHHHHHHHH-HhcCC------CchHHHHHHHHHHHHHHc-cHHHHHHHHHHHhcChhheeeehhhhchHHHhh
Confidence            3322222211111111 11000      011111122222222211 111111135678999999999999999888887


Q ss_pred             H-HHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        254 E-FVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       254 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      + .++|.+.+.+.+..|+...+.+..++.+++.+..++++||.|
T Consensus       394 g~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       394 GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             hhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            5 578999999999999888888877777777777777777754

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.77  E-value=2.4e-17  Score=142.11  Aligned_cols=139  Identities=16%  Similarity=0.043  Sum_probs=98.9

Q ss_pred             HHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        122 VVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      ....+.|.++.+ .|++..+.+.......++.+++.++.|+++||+|||+.+..+.....+........    .      
T Consensus       256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~------  325 (405)
T TIGR00891       256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI----G------  325 (405)
T ss_pred             hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh----C------
Confidence            444566766654 58888889999999999999999999999999999998887765543322221111    0      


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cce
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGV  272 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  272 (338)
                       ...+...+...+.+.+........ ..++.|.+|++.|++++|+.+....++..++|.+.+.+.+..| +..
T Consensus       326 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~  396 (405)
T TIGR00891       326 -ANVAVLGLGLFFQQMLVQGIWGIL-PKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGT  396 (405)
T ss_pred             -CchHHHHHHHHHHHHHHccchhhH-HHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence             111222222233333333333333 3688999999999999999999999999999999999999888 543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.77  E-value=1.4e-17  Score=143.41  Aligned_cols=235  Identities=14%  Similarity=0.095  Sum_probs=134.4

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchh---HHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPV---YLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSL   92 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~---~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (338)
                      ||+.|++.   +++.++..++.++++||+|+   |+.+    ++.+...++...++.+.++..+..   .+.....+..+
T Consensus       167 wr~~f~~~---~~~~l~~~~~~~~~~~~~p~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  236 (412)
T TIGR02332       167 WQWLFLLE---GFPSVILGVMTWFWLDDSPDKAKWLDE----EDKKALKEMIDNDQLTLEQPEGAF---AHAAMPQRSML  236 (412)
T ss_pred             hhHHHHHH---HHHHHHHHHHHhhccCCCcccCCCCCH----HHHHHHHHHHHhcccccccccccc---ccccccHHHHH
Confidence            99999999   78877777777888999984   2221    111111111111110000000000   00000111223


Q ss_pred             HHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc--cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch
Q psy17628         93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT--NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP  170 (338)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~  170 (338)
                      ++++ ++.     ++...+..+.....++.+..|.|.++++.  |++..+.+.......++.+++.++.|+++||++||+
T Consensus       237 ~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~  310 (412)
T TIGR02332       237 REIF-TPA-----IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK  310 (412)
T ss_pred             HHhc-ChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH
Confidence            3333 221     22223333333344667888999999885  567777888899999999999999999999999877


Q ss_pred             HHH-HHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHH
Q psy17628        171 LLL-ISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL  249 (338)
Q Consensus       171 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  249 (338)
                      ... .......++. .+...    .      . .....+....+...+.... .+..+....|.+|++.|++++|+.+..
T Consensus       311 ~~~~~~~~~~~~~~-~~~~~----~------~-~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~a~g~~~~~  377 (412)
T TIGR02332       311 HHTALPYLFAAAGW-LLASA----T------D-HNLIQLLGIIMASMGSFSA-MAIFWTTPDQSISLQARAIAIAVINAT  377 (412)
T ss_pred             HHHHHHHHHHHHHH-HHHHh----c------C-CHHHHHHHHHHHHHHhhhh-hhHHHhhcccccchHHHHHHHHHHHHh
Confidence            533 3332332222 11111    0      0 1111111122222222111 222334557889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcc-cceeehhhhH
Q psy17628        250 GSLIEFVVVKTFDDVERAFG-TGVAFGTFAV  279 (338)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  279 (338)
                      ++++++++|.+.+.+.+..| |...+++.++
T Consensus       378 ~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       378 GNIGSALSPFLIGILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             hhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence            99999999999999988875 6655554443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.77  E-value=3.7e-17  Score=141.84  Aligned_cols=218  Identities=15%  Similarity=0.140  Sum_probs=123.3

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||++|++.   +++.++ .+..+..+||+|++..        ++                          .+++.+++++
T Consensus       197 Wr~~F~i~---~~~~ll-~~~~~~~~~e~~~~~~--------~~--------------------------~~~~~~~~~l  238 (432)
T PRK10406        197 WRIPFALG---AVLAVV-ALWLRRQLDETSQQET--------RA--------------------------LKEAGSLKGL  238 (432)
T ss_pred             hHHHHHHH---HHHHHH-HHHHHhcCCCCchHHH--------hh--------------------------hcccccHHHH
Confidence            99999998   565554 5556667888875310        00                          0011245666


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  174 (338)
                      +++++.   ... .....+.....++....|.|.++++ .|++..+.+....+..++..++.++.|+++||+|||+.+..
T Consensus       239 ~~~~~~---~~~-~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~  314 (432)
T PRK10406        239 WRNRRA---FIM-VLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLC  314 (432)
T ss_pred             HhhHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            665421   111 1111221122355677788888765 58887777777888788888889999999999999998776


Q ss_pred             HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHH-
Q psy17628        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI-  253 (338)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~-  253 (338)
                      +..+.++....+...  ....      ......+....+.....+... ...+.+.+|.+|++.|++++|+.+..+++. 
T Consensus       315 ~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~  385 (432)
T PRK10406        315 FGSLAALFTVPILSA--LQNV------SSPYAAFGLVMCALLIVSFYT-SISGILKAEMFPAQVRALGVGLSYAVANALF  385 (432)
T ss_pred             HHHHHHHHHHHHHHH--HHcC------CcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCccchhhhHHHHHHHHHH
Confidence            655433332211111  0000      011111111111111222112 223367899999999999999999887753 


Q ss_pred             HHHHHHHHHHHHHhccccee-ehhhhHHHHHHH
Q psy17628        254 EFVVVKTFDDVERAFGTGVA-FGTFAVYCIIGT  285 (338)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  285 (338)
                      +...|.+.+ +.+..|++.. ++..+++.++..
T Consensus       386 g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~  417 (432)
T PRK10406        386 GGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAF  417 (432)
T ss_pred             HhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHH
Confidence            445666666 4465664443 333333444443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.76  E-value=5e-17  Score=139.94  Aligned_cols=192  Identities=12%  Similarity=0.080  Sum_probs=128.8

Q ss_pred             HHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCC--------CCcchhhHHHHHHHHHHHHHHHHhh
Q psy17628         92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKI--------ISPNYGQNIVGFIQVIMTFFSSLLV  163 (338)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~  163 (338)
                      .++.+|++..+...+..++....     ......+.+.+.++.|.++        ...+...++..+..+++.++.|+++
T Consensus       201 ~~~~~k~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~  275 (418)
T TIGR00889       201 AFILFKNKRMAIFFFFSMLLGAP-----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFL  275 (418)
T ss_pred             HHHHhcCCCeeeHHHHHHHHHhH-----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777544333322222121     2234456677777766543        4557888888889999999999999


Q ss_pred             hhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHH
Q psy17628        164 DKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLAL  243 (338)
Q Consensus       164 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  243 (338)
                      ||+|||+++..+.++.+++..++...   . ..    ....+..++...+.+.+.+....... .++.|.+|++.|++++
T Consensus       276 dr~g~r~~l~~~~~~~~v~~~l~~~~---~-~~----~~~~~~l~l~~~l~g~~~~~~~~~~~-~~i~~~~p~~~~g~~~  346 (418)
T TIGR00889       276 KRFGIKKVMLLSLVAWALRFGFFAYG---D-PE----YFGYALLFLSMIVYGCAFDFFNISGS-VFVEKEVPVHIRASAQ  346 (418)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHc---C-cc----hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHH
Confidence            99999999999988777765544431   0 00    00112223334444444443333333 6789999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHhc------ccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628        244 GVIC-ILGSLIEFVVVKTFDDVERAF------GTGVAFGTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       244 ~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      |+.+ ....++..++|.+.|.+.+..      ||+..|.+.+++.+++.++.+++++|+++
T Consensus       347 g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       347 GLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            9997 567889999999999998874      47777888888888888788888887644

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.76  E-value=2e-18  Score=140.45  Aligned_cols=184  Identities=10%  Similarity=0.020  Sum_probs=157.8

Q ss_pred             chHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHH
Q psy17628        101 TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~  180 (338)
                      ++.++++...+........-..+..-.|.+.++.|+|..|.+.+.+...+...++.++.|.++||.+.|..+..++++.+
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa  105 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA  105 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence            45556666666665544444567778899999989999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q psy17628        181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKT  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~  260 (338)
                      +..+++++.            .....+.++..+-+.+.+.++.+.. ..+...+|+++||+..++-+...++|+.+.+.+
T Consensus       106 i~nil~Gfs------------~s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~  172 (448)
T COG2271         106 IVNILFGFS------------PSLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPLV  172 (448)
T ss_pred             HHHHHHhhh------------hHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHHHH
Confidence            999999886            2345556667777788888888887 789999999999999999999999999999999


Q ss_pred             H--HHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628        261 F--DDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       261 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      .  +.+..+.+|+..|++-++++++.+++.++.++++++
T Consensus       173 ~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq  211 (448)
T COG2271         173 ALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ  211 (448)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            9  888888899999999999999999888888877643

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.76  E-value=2.4e-17  Score=142.64  Aligned_cols=147  Identities=12%  Similarity=0.120  Sum_probs=104.9

Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHH
Q psy17628        135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY  214 (338)
Q Consensus       135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (338)
                      +.+..+.+...++..++..++.++.|+++||+|||+.+..+..+.++..++..+.            .+.+..+....+.
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~------------~~~~~~~~~~~l~  325 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA------------TGPLEVSILKLLH  325 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHH
Confidence            4455566777888888889999999999999999999888877777766555432            1122333333333


Q ss_pred             HHhhcccccccceeeeeccCCchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhcc
Q psy17628        215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGV-ICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP  293 (338)
Q Consensus       215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (338)
                      +...+...... ..++.|.+|++.|++..+. .+....++..+++.+.+.+.+..||+..|...+++.++..++.++..+
T Consensus       326 g~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        326 AFEVPFLLVGV-FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHHHHH-HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333222222 2577888999999988765 567788999999999999999999988888888777766655555444


Q ss_pred             C
Q psy17628        294 E  294 (338)
Q Consensus       294 ~  294 (338)
                      +
T Consensus       405 ~  405 (420)
T PRK09528        405 G  405 (420)
T ss_pred             C
Confidence            3

>PRK15075 citrate-proton symporter; Provisional

Probab=99.76  E-value=3.7e-17  Score=141.91  Aligned_cols=144  Identities=12%  Similarity=0.053  Sum_probs=95.9

Q ss_pred             chHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy17628        119 GINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE  197 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (338)
                      .++....|.|.++++ .|++..+.++...+..++.+++.++.|+++||+|||+.+..+..+..+........ .... . 
T Consensus       253 ~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~-~-  329 (434)
T PRK15075        253 SFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW-LVAA-P-  329 (434)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HHcC-C-
Confidence            356678889999887 59888888888888889999999999999999999998877654433222111110 0000 0 


Q ss_pred             chhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcccc
Q psy17628        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL-IEFVVVKTFDDVERAFGTG  271 (338)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  271 (338)
                           ..........+.+.+.+.. .+..+.+..|.+|++.|+++.++.+..+.. ++.++|.+.+.+.+..|++
T Consensus       330 -----~~~~~~~~~~~~~~~~g~~-~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        330 -----SFARMLAVELWLSFLYGSY-NGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             -----chHHHHHHHHHHHHHHHHH-HhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence                 1111111122222233222 222235789999999999999997666655 5788999999999988864

>TIGR00895 2A0115 benzoate transport

Probab=99.75  E-value=2.3e-17  Score=141.83  Aligned_cols=240  Identities=17%  Similarity=0.208  Sum_probs=141.0

Q ss_pred             echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (338)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~   77 (338)
                      +|..+++.++..      ||+.|++.   +++..+..++.+.++||+|++..++ +.++..+..++........+.+  +
T Consensus       152 ~g~~~~~~~~~~l~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~  225 (398)
T TIGR00895       152 IGAAVGGFLAGWLIPVFGWRSLFYVG---GIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--A  225 (398)
T ss_pred             HHHHHHHHHHHHHhhcccceeehhhh---hhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--c
Confidence            444555554433      99999998   7777776777778899998876554 3333333333322111110000  0


Q ss_pred             HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHH
Q psy17628         78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTF  157 (338)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  157 (338)
                      ..+...+++..+...+..++++ ..+......... ............+.|.+.++.|.+..+.+.......++.+++.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  303 (398)
T TIGR00895       226 LPEQKATQGTKRSVFKALFQGK-TARITVLLWLLY-FMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSI  303 (398)
T ss_pred             ccccccccchhhHHHHHHhcch-hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            0000000011111222233332 222222222222 22233355667788888888898988889999999999999999


Q ss_pred             HHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch
Q psy17628        158 FSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD  237 (338)
Q Consensus       158 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  237 (338)
                      +.|+++||+|||+.... ..+..+...++...  .         .+.........+.+.+.+...... .+++.|.+|++
T Consensus       304 ~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~  370 (398)
T TIGR00895       304 IFGWLADRLGPRVTALL-LLLGAVFAVLVGST--L---------FSPTLLLLLGAIAGFFVNGGQSGL-YALMALFYPTA  370 (398)
T ss_pred             HHHHHHhhcchHHHHHH-HHHHHHHHHHHHHH--h---------hCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCHH
Confidence            99999999999944433 33333332222221  0         012233334444555544444333 47899999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        238 VKGLALGVICILGSLIEFVVVKTFDDV  264 (338)
Q Consensus       238 ~r~~~~~~~~~~~~~~~~~~~~~~~~~  264 (338)
                      .|++++|+.+....++..++|.+.|.+
T Consensus       371 ~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       371 IRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            999999999999999999999888764

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.75  E-value=4.3e-17  Score=139.13  Aligned_cols=228  Identities=11%  Similarity=0.053  Sum_probs=139.7

Q ss_pred             echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (338)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~   77 (338)
                      +|..+++.++..      ||+.|++.   +.+.++..++.++++||+|++...+    +          .          
T Consensus       136 ~g~~ig~~~~~~l~~~~~~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~----------~----------  188 (375)
T TIGR00899       136 LAWVIGPPLAFWLALGFGFTVMFLTA---ALAFVLCGVLVWLFLPSYPRGAPGA----L----------T----------  188 (375)
T ss_pred             HHHHHhhhHHHHHHHhcccHHHHHHH---HHHHHHHHHHHHHhCCCcccCcccc----c----------C----------
Confidence            455555555443      99999999   7776666666677789977421000    0          0          


Q ss_pred             HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHH
Q psy17628         78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMT  156 (338)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~  156 (338)
                                 +.+.++.++++..+. ......+...    .......+.|.+++ +.|.+..+.+...........++.
T Consensus       189 -----------~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  252 (375)
T TIGR00899       189 -----------RLEVRGLLASRDTRL-LFVACTLMWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFM  252 (375)
T ss_pred             -----------cchhhhhhcCcchHH-HHHHHHHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence                       001122344442222 2221111111    12233445566654 458888888877777777778888


Q ss_pred             HHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc
Q psy17628        157 FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP  236 (338)
Q Consensus       157 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  236 (338)
                      ++.|++.||+|||+.+..+.....+........            .+.+.......+.+.+.+... +....+..|..|+
T Consensus       253 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~  319 (375)
T TIGR00899       253 LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD------------NSLWALLMLQLLNAIFIGILA-GIGMLYFQDLMPG  319 (375)
T ss_pred             HhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcc
Confidence            999999999999998877665544433322221            112222333333333333332 2333577888886


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHH
Q psy17628        237 DVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV  288 (338)
Q Consensus       237 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (338)
                      + +++++++.+...+++..++|.+.+.+.+..|++..+.+.+++.+++.++.
T Consensus       320 ~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       320 R-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            4 67999999999999999999999999998898888877777666665443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.75  E-value=3.4e-17  Score=140.32  Aligned_cols=159  Identities=9%  Similarity=0.041  Sum_probs=105.1

Q ss_pred             HHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        121 NVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       121 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      .....+.|.++++ .|++..+.+.......++.+++.++.|+++||+|||+.+..+.....+........          
T Consensus       233 ~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----------  302 (393)
T PRK15011        233 SLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA----------  302 (393)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH----------
Confidence            3445567777754 58888888888777778888899999999999999998776654444332222111          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                        ...+..+....+.+...+....... .+..|.+|+ .|++++++.+...++|..+++.+.+.+.+..||+..+.+.++
T Consensus       303 --~~~~~~l~~~~l~~~~~g~~~~~~~-~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~  378 (393)
T PRK15011        303 --HSPAILLGLQLLNAIYIGILGGIGM-LYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALV  378 (393)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence              0112222222222222222222222 456888886 499999999888999999999999999998898877776666


Q ss_pred             HHHHHHHHHHhhccC
Q psy17628        280 YCIIGTFFVYFVVPE  294 (338)
Q Consensus       280 ~~~~~~~~~~~~~~~  294 (338)
                      +.+++.++. +..||
T Consensus       379 ~~~~~~~~~-~~~~~  392 (393)
T PRK15011        379 MIIATLFCL-LRIKD  392 (393)
T ss_pred             HHHHHHHHH-HhhcC
Confidence            665555443 34554

>PRK03545 putative arabinose transporter; Provisional

Probab=99.75  E-value=1.4e-16  Score=136.60  Aligned_cols=218  Identities=13%  Similarity=0.047  Sum_probs=136.8

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||+.|++.   +++.++..++.+..+||.|+    + +. +                               ...+.++.
T Consensus       162 w~~~f~~~---~~~~~l~~~~~~~~~~~~~~----~-~~-~-------------------------------~~~~~~~~  201 (390)
T PRK03545        162 WRTTFLAI---GGGALITLLLLIKLLPLLPS----E-HS-G-------------------------------SLKSLPLL  201 (390)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHhCCCCCC----C-Cc-c-------------------------------hHHHHHHH
Confidence            99999999   77777655566666777542    0 00 0                               00123456


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  174 (338)
                      ++++..+......... ..    .......+.+.+.++ .|.+..+.+.......++.+++.++.|+++||++||... .
T Consensus       202 ~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~  275 (390)
T PRK03545        202 FRRPALVSLYLLTVVV-VT----AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-I  275 (390)
T ss_pred             HhCcHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-H
Confidence            6666333222221111 11    122334556666665 588888889999999999999999999999999988654 4


Q ss_pred             HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (338)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (338)
                      +..+..++.......           ..+.+..+....+.+.+... ..+.....+.|..| +.|++++|+.+....+|.
T Consensus       276 ~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~  342 (390)
T PRK03545        276 AIALLLVCLLLLLPA-----------ANSEWHLSVLSIFWGIAIMC-IGLAMQVKVLKLAP-DATDVAMALFSGIFNIGI  342 (390)
T ss_pred             HHHHHHHHHHHHHHH-----------hchHHHHHHHHHHHHHHHhc-chHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHH
Confidence            433333333222111           01122233333334433322 22222245667766 578999999999999999


Q ss_pred             HHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhc
Q psy17628        255 FVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV  292 (338)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (338)
                      .+++.+.|.+.+..|++..+...+++.+++.++.+...
T Consensus       343 ~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        343 GAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999888888877777776665544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.74  E-value=1.4e-17  Score=144.97  Aligned_cols=154  Identities=11%  Similarity=0.011  Sum_probs=105.7

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc--CCchHHHHHh--HHHHHHHHHHHHHHHHhhc
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPLLLISD--ICMAICIGALGYYFYLLKL  195 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~--~~~~~~~~~~~~~~~~~~~  195 (338)
                      ......+.|.+.++.|++..+.+...++.+++.+++.++.|+++||.  ++|+....+.  +..+++.++....      
T Consensus       257 ~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~------  330 (455)
T TIGR00892       257 FFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA------  330 (455)
T ss_pred             ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence            34556677888888899999999999999999999999999999974  3343333322  2222222222111      


Q ss_pred             ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cceee
Q psy17628        196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAF  274 (338)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  274 (338)
                            .+.+..++...+.+.+.+..... ..+++.|.+|++.+++++|+.+....++..++|.+.+.+.+..+ |+..+
T Consensus       331 ------~~~~~~~i~~~~~G~~~g~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f  403 (455)
T TIGR00892       331 ------GDYTGLVIYCIFFGLSFGSVGAL-LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIF  403 (455)
T ss_pred             ------chHHHHHHHHHHHHHHhchHHHH-HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHH
Confidence                  11223334444555544433333 33778899999999999999999999999999999999988774 77777


Q ss_pred             hhhhHHHHHHHH
Q psy17628        275 GTFAVYCIIGTF  286 (338)
Q Consensus       275 ~~~~~~~~~~~~  286 (338)
                      ++.+++.+++.+
T Consensus       404 ~~~~~~~li~~~  415 (455)
T TIGR00892       404 YASGSIVVSAGL  415 (455)
T ss_pred             HHhhHHHHHHHH
Confidence            776666555543

>TIGR00895 2A0115 benzoate transport

Probab=99.74  E-value=5.2e-17  Score=139.68  Aligned_cols=165  Identities=12%  Similarity=-0.006  Sum_probs=129.3

Q ss_pred             chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      .......+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+++...         
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------  102 (398)
T TIGR00895        32 DLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA---------  102 (398)
T ss_pred             HHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc---------
Confidence            34456677888888889999999999999999999999999999999999999999888777776665543         


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                         .+.+..++...+.+.+.+.... ...+++.|.+|++.|++++++......++..+++.+.+.+.+..+|+..+++.+
T Consensus       103 ---~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~  178 (398)
T TIGR00895       103 ---TNVTQLLILRFLAGLGLGGLMP-NLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGG  178 (398)
T ss_pred             ---cchHHHHHHHHHHhcccccchh-hHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhh
Confidence               1223334444455544444433 334789999999999999999999999999999999999989899998888876


Q ss_pred             HHHHHHHHHHHhhccCCC
Q psy17628        279 VYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~  296 (338)
                      ++..+..++.+.++||+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       179 IAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             hHHHHHHHHHHHhCCCCC
Confidence            666666666666677764

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.73  E-value=1.4e-16  Score=136.32  Aligned_cols=167  Identities=10%  Similarity=0.030  Sum_probs=118.8

Q ss_pred             chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ++.....+.|.++++.|.+..+.+.......++.+++.++.+++.||++||+.+..+..+..++...+...   .     
T Consensus       220 ~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~---~-----  291 (393)
T PRK09705        220 GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL---P-----  291 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc---c-----
Confidence            35567788899888889999999999999999999999999999999999999888876666655433321   0     


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cceeehh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGT  276 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  276 (338)
                        . .....  ...+.+.+.+..... ......+.. |++.|++.+|+.+..+.+++.++|.+.+++.+..| +...+.+
T Consensus       292 --~-~~~~~--~~~l~g~g~g~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~  365 (393)
T PRK09705        292 --L-QLPVL--WAMVCGLGLGGAFPL-CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAF  365 (393)
T ss_pred             --c-hHHHH--HHHHHHHhccchHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence              0 01111  122233333333222 223445555 46789999999999999999999999999999887 4445666


Q ss_pred             hhHHHHHHHHHHHhhccCCCCCC
Q psy17628        277 FAVYCIIGTFFVYFVVPETKNKS  299 (338)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~  299 (338)
                      .++++++..+..+.+.||++.+.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        366 HALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             HHHHHHHHHHHHHHhccccccch
Confidence            66666666666666678876553

>KOG2533|consensus

Probab=99.73  E-value=3e-17  Score=141.07  Aligned_cols=227  Identities=14%  Similarity=0.040  Sum_probs=128.9

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchh--HHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPV--YLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLV   93 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (338)
                      |||.|++.   |++.++.+++.++++|+.|.  |+.++++.+-.   .++.+..+.+           ...++.+...++
T Consensus       205 W~~~FiI~---G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~---~~~~~~~~~~-----------~~~~~~~~~~~~  267 (495)
T KOG2533|consen  205 WRWLFIIE---GVITLVLGIVVFFFLPDNPSKAWFLTDEEKELV---VERLRESPSG-----------GIENKFKWKGFK  267 (495)
T ss_pred             ceeehhHH---HHHHHHHHheEEEEecCChhhccccchHHHHHH---HHHHHhccCC-----------CcccccCHHHHH
Confidence            99999999   99999999999999999996  33222211111   1111111100           001113456788


Q ss_pred             HHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh----cCC
Q psy17628         94 EIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGR  168 (338)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr  168 (338)
                      +.+++|..|     .+.++.++.....+.+.+|+|.++++ .|++..+++.+.+...++.+++.+++|+++||    ..+
T Consensus       268 ~a~~dp~vw-----~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~  342 (495)
T KOG2533|consen  268 EALKDPGVW-----PFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFAR  342 (495)
T ss_pred             HHHhchhHH-----HHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHH
Confidence            888888433     23333333333467789999999998 47899999999999999999999999999999    455


Q ss_pred             chHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhh-hhHHHHHH
Q psy17628        169 RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK-GLALGVIC  247 (338)
Q Consensus       169 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r-~~~~~~~~  247 (338)
                      |........+..+........  ..         ...... ...+.+........++.....++....+.| -+..+...
T Consensus       343 ~~~~~~~~~~~~~~g~~~l~~--~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i  410 (495)
T KOG2533|consen  343 RLLFIVFLCLYAIIGAISLLA--AA---------VLPGAY-GAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAII  410 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh--hc---------cchHHh-HHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhh
Confidence            555544444443333221111  00         011111 111111111111222333455555544444 44444555


Q ss_pred             HHHHHHHHHHHHHHHHHH-Hhcccceeehh
Q psy17628        248 ILGSLIEFVVVKTFDDVE-RAFGTGVAFGT  276 (338)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  276 (338)
                      ...+.++.+.+.+..... ..++|...+..
T Consensus       411 ~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~  440 (495)
T KOG2533|consen  411 DGTGSAGAISGQLFRSLDAPRYGWGAVFYM  440 (495)
T ss_pred             cchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence            555666666666554332 33566666633

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.73  E-value=1.1e-16  Score=137.75  Aligned_cols=182  Identities=12%  Similarity=-0.044  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHH
Q psy17628        103 KATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAIC  182 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~  182 (338)
                      ++.+....+.+..............|.+.+++|.+..+.++..+...++..+++++.|+++||+|||+++..+.++..++
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~   86 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA   86 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence            33444444455555555566777778788888999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy17628        183 IGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFD  262 (338)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~  262 (338)
                      .++.++.            ++.+..++...+.+.+.+... +....++.|.+|+++|++++++.+....+|..+++.+.+
T Consensus        87 ~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~  153 (412)
T TIGR02332        87 STATMFA------------TGPESLYLLRILVGIAEAGFL-PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG  153 (412)
T ss_pred             HHHHHHh------------cCHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8776654            122344445555555555443 333367899999999999999999999999999998888


Q ss_pred             HHHH------hcccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628        263 DVER------AFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       263 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      .+.+      ..||++.|.+.++..++..++.++++||+++
T Consensus       154 ~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       154 YILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            7764      3689999988877777766667777888764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.72  E-value=5.3e-17  Score=140.85  Aligned_cols=178  Identities=9%  Similarity=0.054  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHH
Q psy17628        105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG  184 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  184 (338)
                      .+...++..+..+........+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++.++.++.+++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~  103 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINI  103 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHH
Confidence            33333333333333344567788999999999999999999999999999999999999999999999999888888877


Q ss_pred             HHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDV  264 (338)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  264 (338)
                      +....            .+.+...+...+.+.+.+....... .++.|.+|+++|++++++.+....++..+++.+.+.+
T Consensus       104 ~~~~~------------~~~~~l~~~~~l~g~~~g~~~~~~~-~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  170 (434)
T PRK11663        104 LFGFS------------SSLWAFALLWVLNAFFQGWGWPVCA-KLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI  170 (434)
T ss_pred             HHHHH------------hHHHHHHHHHHHHHHHHHccchHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66553            1122333333444444554444444 7889999999999999999999999999999999999


Q ss_pred             HHhcccceeehhhhHHHHHHHHHHHhhccCC
Q psy17628        265 ERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (338)
                      .+..||++.+.+.+++.++..++..+.++|+
T Consensus       171 ~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        171 ALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999998887776665554555556654

>KOG2532|consensus

Probab=99.72  E-value=4.7e-17  Score=139.49  Aligned_cols=237  Identities=16%  Similarity=0.192  Sum_probs=158.4

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhh---hhhhHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQA---QKKKSL   92 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~   92 (338)
                      |+++|++.   |++++++.++.+++..|+|.-   +..                ..++|.+.+++.+.+++   +.+.|+
T Consensus       194 W~sifY~~---g~~g~i~~~~w~~~~~d~P~~---h~~----------------is~~El~~I~~~k~~~~~~~~~~vP~  251 (466)
T KOG2532|consen  194 WPSIFYVF---GIVGLIWFILWFLFYSDSPSK---HPN----------------ISEKELKYIEKGKSEAHVKKKPPVPY  251 (466)
T ss_pred             CchHHHHH---HHHHHHHHHHHHHHhcCCccc---CCC----------------CCHHHHHHHHhcccccccCCCCCCCH
Confidence            99999999   999999888888888999952   211                12222233332222211   146799


Q ss_pred             HHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc--
Q psy17628         93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR--  169 (338)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--  169 (338)
                      +++++++     .++...+..+....+.+.+..|.|.|+++. |++..+.++..+++.+...+..+++|.++||.-+|  
T Consensus       252 ~~i~ts~-----~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l  326 (466)
T KOG2532|consen  252 KAILTSP-----PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL  326 (466)
T ss_pred             HHHHcCH-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9999987     355555556666667889999999999987 99999999999999999999999999999998663  


Q ss_pred             -------hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhH
Q psy17628        170 -------PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLA  242 (338)
Q Consensus       170 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  242 (338)
                             ..-.++....+++++.+++.   .       ....+..++++.+.....+....... .-..|. .++.-+..
T Consensus       327 s~t~~rkifn~i~~~~~ai~l~~l~~~---~-------~~~~~~a~~~l~~~~~~~g~~~~Gf~-~~~~~~-apq~a~~l  394 (466)
T KOG2532|consen  327 SETTVRKIFNTIAFGGPAVFLLVLAFT---S-------DEHRLLAVILLTIAIGLSGFNISGFY-KNHQDI-APQHAGFV  394 (466)
T ss_pred             chHhHHHHHHhHHHHHHHHHHHeeeec---C-------CCcchHHHHHHHHHHHHcccchhhhH-hhhhhc-cchHHHHH
Confidence                   11223333334444333332   0       11222333333332222222222211 222333 45678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---hcccceeehhhhHHHHHHHHHHHhh
Q psy17628        243 LGVICILGSLIEFVVVKTFDDVER---AFGTGVAFGTFAVYCIIGTFFVYFV  291 (338)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  291 (338)
                      +|+.+..+.+.++++|.+.+.+..   ...|+..|++.+++.+++.++..++
T Consensus       395 ~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  395 MGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            999999999999999999998873   3468888988888887777554443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.71  E-value=3.9e-16  Score=136.98  Aligned_cols=163  Identities=9%  Similarity=0.017  Sum_probs=107.9

Q ss_pred             HHHhhHHHH-HhccCCCCCcchhhH-HHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        123 VIFYLKRIL-IATNSKIISPNYGQN-IVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       123 ~~~~~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      ...+.+.++ ++.|++..+.+.... ...++.+++.+++|+++||+|+|+.+.++..+.++..+.+...... . .    
T Consensus       241 ~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~-~----  314 (491)
T PRK11010        241 AMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-D-K----  314 (491)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-c-c----
Confidence            344455554 457999999888874 5567899999999999999999988776655555444332221110 0 0    


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY  280 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (338)
                        +.+.......+.....+.+.... +++..+..+++.+++.+++.+....++..+++.+.|.+.+..||...|.+.+++
T Consensus       315 --~~~~l~~~~~l~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~  391 (491)
T PRK11010        315 --NLYSMGAAVFFENLCGGMGTAAF-VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAA  391 (491)
T ss_pred             --cHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence              11111222222222222223333 367788889999999999999999999998999999999999988777777777


Q ss_pred             HHHHHHHHHhhccCC
Q psy17628        281 CIIGTFFVYFVVPET  295 (338)
Q Consensus       281 ~~~~~~~~~~~~~~~  295 (338)
                      ++++.++... .+++
T Consensus       392 ~l~~l~~~~~-~~~~  405 (491)
T PRK11010        392 AVPGLLLLLV-CRQT  405 (491)
T ss_pred             HHHHHHHHHH-HHhc
Confidence            7666555544 4443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.70  E-value=1.9e-16  Score=138.83  Aligned_cols=240  Identities=12%  Similarity=0.022  Sum_probs=135.2

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||+.|++.   ++++++..++.+.+.+|+|+...  ...++.++..++.              .++.+++.+.+.+++++
T Consensus       197 w~~~f~i~---~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~i~~~--------------~~~~~~~~~~~~~~~~~  257 (465)
T TIGR00894       197 WPMIFYVF---GIVGCAWSLLWFVFPADDPSIHP--CISKFEKKYINSS--------------LQGQKGSTRQSLPIKAI  257 (465)
T ss_pred             CCeehhhh---hHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHhh--------------cccccCCCCCCCCHHHH
Confidence            99999999   88887766667777788885211  1111111110000              00000011123357777


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHH-
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL-  173 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-  173 (338)
                      ++++..     +...+..+....+.+.+..|+|.++++. |++..+.++...+..++..++.+++|+++||+++|+... 
T Consensus       258 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~  332 (465)
T TIGR00894       258 PKSLPV-----WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL  332 (465)
T ss_pred             hcCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence            776532     2223333333334667778999988764 889999999999999999999999999999986543211 


Q ss_pred             --HHhHHHHHHHH---HHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHH
Q psy17628        174 --ISDICMAICIG---ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI  248 (338)
Q Consensus       174 --~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  248 (338)
                        .......++..   ...+.....       .......++...+.+.+.+.. .+..+....|..|. .+|+++++.+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~-~~g~~~g~~~~  403 (465)
T TIGR00894       333 TAARKIFNGIGGLGPGIFAYALPYL-------SAAFYLTIIILTLANAVSSGP-LAGVLINSLDLAPR-FLGFIKGITGL  403 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc-------CCchHHHHHHHHHHHHHhhhh-hhhhhhchhhcChh-HHHHHHHHHHH
Confidence              00111111111   111110000       011122222333333332222 22232445566665 89999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc---ccceeehhhhHHHHHHHHHH
Q psy17628        249 LGSLIEFVVVKTFDDVERAF---GTGVAFGTFAVYCIIGTFFV  288 (338)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  288 (338)
                      .+.+++.++|.+.+.+.+..   +|...|.+.+++.+++.++.
T Consensus       404 ~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  446 (465)
T TIGR00894       404 PGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY  446 (465)
T ss_pred             HHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence            99999999999999877643   25556666665555555433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.70  E-value=8.9e-16  Score=138.55  Aligned_cols=162  Identities=16%  Similarity=0.026  Sum_probs=121.0

Q ss_pred             HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      ..+....|.+..+.|.+..+.+++.+...++.+++.+++|+++||+|||+.++++.++.+++.++..+.           
T Consensus       184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa-----------  252 (742)
T TIGR01299       184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV-----------  252 (742)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            345667788888889999899999999999999999999999999999999999988888777666543           


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF------------  268 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  268 (338)
                       ...+.+++..++.+++.+... +...++++|.+|++.|+..+++...+..+|..+++.+...+...+            
T Consensus       253 -~s~~~llv~R~l~G~g~g~~~-p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~  330 (742)
T TIGR01299       253 -QGYGFFLFCRLLSGFGIGGAI-PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQF  330 (742)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccccc
Confidence             122344555556666555444 444589999999999999999999998898888887766655444            


Q ss_pred             -ccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        269 -GTGVAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       269 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                       +|++.+++.++. .+..++..+++||++
T Consensus       331 ~gWR~l~~i~~lp-~ll~ll~~~~lPESP  358 (742)
T TIGR01299       331 HSWRVFVIVCAFP-CVFAIGALTFMPESP  358 (742)
T ss_pred             ccHHHHHHHHHHH-HHHHHHHHHHcCCCH
Confidence             355555444443 344445566789974

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.70  E-value=3.9e-16  Score=133.76  Aligned_cols=161  Identities=13%  Similarity=0.027  Sum_probs=126.6

Q ss_pred             HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      ......|.+.++.|.+..+.++..+...++..++.++.|.++||+|||+++..+..+.+++.+.+.+.            
T Consensus        27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------   94 (390)
T PRK03545         27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------   94 (390)
T ss_pred             HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------------
Confidence            34445788888999999999999999999999999999999999999999999988888887766654            


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC  281 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (338)
                      ++.+..++...+.+.+.+.. .+...+++.|.+|+++|++++|+......++..++|.+.+.+.+..||++.|++.++++
T Consensus        95 ~~~~~l~~~r~~~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~  173 (390)
T PRK03545         95 WNFTVLLISRIGIAFAHAIF-WSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGA  173 (390)
T ss_pred             ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHH
Confidence            12233344444444443322 23333688999999999999999999999999999999998888899999998888877


Q ss_pred             HHHHHHHHhhccCC
Q psy17628        282 IIGTFFVYFVVPET  295 (338)
Q Consensus       282 ~~~~~~~~~~~~~~  295 (338)
                      ++..+..+...||.
T Consensus       174 ~l~~~~~~~~~~~~  187 (390)
T PRK03545        174 LITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHhCCCC
Confidence            77765655556654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.69  E-value=3e-16  Score=137.47  Aligned_cols=154  Identities=14%  Similarity=0.085  Sum_probs=92.6

Q ss_pred             HHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch-------HHHHHhHHHHHHHHHHHHHHHHh
Q psy17628        122 VVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP-------LLLISDICMAICIGALGYYFYLL  193 (338)
Q Consensus       122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-------~~~~~~~~~~~~~~~~~~~~~~~  193 (338)
                      ....+.|.++.+ .|++..+.+....+..++.+++.+++|+++||++||+       .......+.++..+++...    
T Consensus       270 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~----  345 (476)
T PLN00028        270 TMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA----  345 (476)
T ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc----
Confidence            455667777655 4999888999999999999999999999999998762       1112212111211111110    


Q ss_pred             hcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccee
Q psy17628        194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVA  273 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (338)
                              .+....+....+++.+.....+. .+++..+..| +.||++.|+.+..+.+++.+++.+.+ ..+..+|...
T Consensus       346 --------~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~  414 (476)
T PLN00028        346 --------NSLGAAIVVMILFSIFVQAACGA-TFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETG  414 (476)
T ss_pred             --------chHHHHHHHHHHHHHHHHHhhhh-hcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhH
Confidence                    01112222233333333222222 3356666654 68999999998888888888877654 1122346677


Q ss_pred             ehhhhHHHHHHHHHHHh
Q psy17628        274 FGTFAVYCIIGTFFVYF  290 (338)
Q Consensus       274 ~~~~~~~~~~~~~~~~~  290 (338)
                      |.+.+++.+++.++.++
T Consensus       415 f~~~~~~~~i~~~~~~~  431 (476)
T PLN00028        415 ISLMGVMIIACTLPVAF  431 (476)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            77777666666554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.69  E-value=2.6e-16  Score=135.23  Aligned_cols=164  Identities=14%  Similarity=0.064  Sum_probs=130.5

Q ss_pred             HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      .......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++..++...           
T Consensus        11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----------   79 (399)
T TIGR00893        11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----------   79 (399)
T ss_pred             HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------
Confidence            455566777788889999999999999999999999999999999999999999988888777766554           


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY  280 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (338)
                       .+.+..++...+.+.+.+....... .++.|.+|+++|++++++......++..+++.+.+.+.+..+|++.+.+.+++
T Consensus        80 -~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  157 (399)
T TIGR00893        80 -GAYVSLYILRVLLGAAEAPFFPGII-LIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVL  157 (399)
T ss_pred             -cCHHHHHHHHHHHHHHHHhhhhHHH-HHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence             1223444555555555554443333 78999999999999999999999999999999999888989999988887777


Q ss_pred             HHHHHHHHHhhccCCCC
Q psy17628        281 CIIGTFFVYFVVPETKN  297 (338)
Q Consensus       281 ~~~~~~~~~~~~~~~~~  297 (338)
                      .++..++.++..||+++
T Consensus       158 ~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       158 GIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHHHhhheecCCCC
Confidence            77666666665666543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.68  E-value=4e-16  Score=133.63  Aligned_cols=166  Identities=14%  Similarity=0.095  Sum_probs=129.7

Q ss_pred             chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      +........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+.....         
T Consensus        20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---------   90 (385)
T TIGR00710        20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS---------   90 (385)
T ss_pred             HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---------
Confidence            34555566788888889999999999999999999999999999999999999999888888777766543         


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                         .+.+...+...+.+.+.+....... +++.|.+|+++|++++++.+....++..+++.+.+.+.+..+|+..+++.+
T Consensus        91 ---~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~  166 (385)
T TIGR00710        91 ---NNIETLLVLRFVQAFGASAGSVISQ-ALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLS  166 (385)
T ss_pred             ---ccHHHHHHHHHHHHcchhHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence               1122333444444444443333333 788999999999999999999999999999999998888889998888877


Q ss_pred             HHHHHHHHHHHhhccCCCC
Q psy17628        279 VYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~  297 (338)
                      ++.++..+..++..||+++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       167 LAGILLSALIFFILPETLP  185 (385)
T ss_pred             HHHHHHHHHHHHhCCCCCC
Confidence            7777776666666676543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.68  E-value=1.2e-15  Score=130.99  Aligned_cols=147  Identities=19%  Similarity=0.122  Sum_probs=99.7

Q ss_pred             hHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      .+....+.|.+.+ +.|.+..+.+.......++..++.++.|+++||+|||+.+.....+..+......... ..     
T Consensus       235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~-----  308 (394)
T TIGR00883       235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL-LD-----  308 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-hc-----
Confidence            4556677888884 4588888888888889999999999999999999999987755444433322111110 00     


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhcc-cceeeh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL-GSLIEFVVVKTFDDVERAFG-TGVAFG  275 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~  275 (338)
                        ....+.......+.+.+.+....+.. +++.|.+|++.|++++++.+.. ..++..++|.+.+.+.++.| |+..++
T Consensus       309 --~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~  384 (394)
T TIGR00883       309 --SGSFTLFFFLVLGLALIGGMYTGPMG-SFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGY  384 (394)
T ss_pred             --CCchHHHHHHHHHHHHHHHHHhhhHH-HHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHH
Confidence              01222333333444444444444443 7889999999999999985544 55777899999999999888 544433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.68  E-value=8.5e-16  Score=132.66  Aligned_cols=157  Identities=8%  Similarity=0.016  Sum_probs=106.3

Q ss_pred             HHHhhHHHHHhccCCCCC----cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        123 VIFYLKRILIATNSKIIS----PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       123 ~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ...+.+.+..+.+.+..+    .+....+.+++.+++.+..|+++||+|||+.+..+..+..++.+.....         
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------  308 (408)
T PRK09874        238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV---------  308 (408)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh---------
Confidence            344556665554322222    2344455667778888999999999999999988877666555443322         


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                         ...+...+...+.+.+.+....... +++.+..|++.||+.+++.+....++..++|.+.+.+.+..|++..|.+.+
T Consensus       309 ---~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~  384 (408)
T PRK09874        309 ---QTPLQLGILRFLLGAADGALLPAVQ-TLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTA  384 (408)
T ss_pred             ---ccHHHHHHHHHHHHhhhHhhHHHHH-HHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHH
Confidence               1122233333344444443333333 566777888999999999999999999999999999999999988888888


Q ss_pred             HHHHHHHHHHHhhc
Q psy17628        279 VYCIIGTFFVYFVV  292 (338)
Q Consensus       279 ~~~~~~~~~~~~~~  292 (338)
                      ++.++..++.++..
T Consensus       385 ~~~l~~~~~~~~~~  398 (408)
T PRK09874        385 GVVLFNAVYSWNSL  398 (408)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777766555433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.68  E-value=4.1e-16  Score=133.18  Aligned_cols=230  Identities=16%  Similarity=0.122  Sum_probs=128.6

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||+.|++.   +++.++..++.+++.||+|+....+...++.        .++.+.+    + ++..++.+..+...++.
T Consensus       149 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~----~-~~~~~~~~~~~~~~~~~  212 (379)
T TIGR00881       149 WHWVFIVP---GIIAIIVSLICFLLLRDSPQSCGLPPAEEMP--------NEEPDGD----A-EKKEEELTKKQIFLQYV  212 (379)
T ss_pred             chhHHHHH---HHHHHHHHHHHheeeCCCccccccCccccCc--------ccccccc----c-ccccccccchHHHHHHH
Confidence            99999998   7777776777777888877521111000000        0000000    0 00000011122234556


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  174 (338)
                      ++++..+...     +..+...........+.|.++++ .|++..+.+.......++.+++.++.|+++||..+|+....
T Consensus       213 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~  287 (379)
T TIGR00881       213 LLNKVLWYIS-----LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL  287 (379)
T ss_pred             HhcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHH
Confidence            6665322211     11111222244566777887765 48888888999999999999999999999998643332222


Q ss_pred             HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (338)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (338)
                      ................ ...      ..............+... .+..+..+.+..|.+|++.|+++.|+.+....+++
T Consensus       288 ~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  359 (379)
T TIGR00881       288 AVFFMALIIVSLLVYW-LNP------AANPLMDLICLFALGFLV-YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGG  359 (379)
T ss_pred             HHHHHHHHHHHHHHHh-cCc------chhHHHHHHHHHHHHHHH-hhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhh
Confidence            2111111111111110 000      001112222222233222 22223333577899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccceee
Q psy17628        255 FVVVKTFDDVERAFGTGVAF  274 (338)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~  274 (338)
                      .++|.+.+.+.+..||+..|
T Consensus       360 ~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       360 ILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             hhhhhhHHHHHHhhcccccC
Confidence            99999999999998887643

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.68  E-value=4.6e-15  Score=127.65  Aligned_cols=157  Identities=15%  Similarity=0.134  Sum_probs=111.3

Q ss_pred             HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      ....+.+.+..+.|.  .+.+.......++.+++.++.|++.||+|+|+.+..+..+.+++.+.+...            
T Consensus       234 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------  299 (399)
T PRK05122        234 TIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA------------  299 (399)
T ss_pred             HHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------------
Confidence            445566776666665  344566677888889999999999999999999888877766665544432            


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC  281 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (338)
                      .+.+..++...+.+.+.+....... ....|.+|++.|++++|+.+....++..+++.+.+.+.+..|++..+++.+++.
T Consensus       300 ~~~~~~~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  378 (399)
T PRK05122        300 PSPWMALIGAALTGFGFSLVFPALG-VEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAA  378 (399)
T ss_pred             ccHHHHHHHHHHHHHhHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            1122333334444444443333333 456788999999999999999999999999999999999889888888777777


Q ss_pred             HHHHHHHHhhccC
Q psy17628        282 IIGTFFVYFVVPE  294 (338)
Q Consensus       282 ~~~~~~~~~~~~~  294 (338)
                      +++.++.++ .++
T Consensus       379 ~~~~~~~~~-~~~  390 (399)
T PRK05122        379 LLGLALTWL-LYR  390 (399)
T ss_pred             HHHHHHHHH-hcc
Confidence            666655444 444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.67  E-value=2.3e-15  Score=128.97  Aligned_cols=183  Identities=11%  Similarity=-0.057  Sum_probs=111.6

Q ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHH-HHHHHHHHHHHhhhhcCCc
Q psy17628         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAGRR  169 (338)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~grr  169 (338)
                      ++++.+|+|..+......++ ...    .......+.+.++++.|++..+.+......++ ..+++.++.|++.||+|+|
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l-~~~----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~  274 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALL-SAM----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW  274 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHH-HHH----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            45677777743332222222 111    13344556777888889999998888877764 5567789999999999999


Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc-hhhhhHHHHHHH
Q psy17628        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-DVKGLALGVICI  248 (338)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~  248 (338)
                      +.+..+..+.++........ ......     ...........+.....+....... +...+..++ +.+++.+++.+.
T Consensus       275 ~~l~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~  347 (390)
T TIGR02718       275 RTFILGVGLAGSLALLWFAQ-AAFWLA-----PGIAVAWSCSAFGSLITGITSVAIY-TAFMRFAGDGDQAGTDVTAVQS  347 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHcccC-----CcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCcccchHHHHHHHHH
Confidence            99887766553332222111 100000     0111111211222222333323332 344455554 789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHH
Q psy17628        249 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT  285 (338)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (338)
                      ...++..++|.+.+.+.+..|+...|...+.+.+++.
T Consensus       348 ~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       348 TRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            9999999999999999999888777766655554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.67  E-value=1.4e-15  Score=130.13  Aligned_cols=161  Identities=12%  Similarity=0.130  Sum_probs=127.0

Q ss_pred             HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      ......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++....            
T Consensus        38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------  105 (394)
T PRK10213         38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------  105 (394)
T ss_pred             HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence            34446778888899999999999999999999999999999999999999999999988877665543            


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC  281 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (338)
                      .+.+..++...+.+.+.+.... ....++.|.+|+++|+.++++......++..++|.+.+.+.+..+|++.|++.+++.
T Consensus       106 ~~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~  184 (394)
T PRK10213        106 NSFSLLLIGRACLGLALGGFWA-MSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMG  184 (394)
T ss_pred             ChHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            1233445555555555554433 333788999999999999999999999999999999999999899999888877666


Q ss_pred             HHHHHHHHhhccCC
Q psy17628        282 IIGTFFVYFVVPET  295 (338)
Q Consensus       282 ~~~~~~~~~~~~~~  295 (338)
                      ++..+......||+
T Consensus       185 ~~~~l~~~~~~p~~  198 (394)
T PRK10213        185 VLCIFWIIKSLPSL  198 (394)
T ss_pred             HHHHHHHHHHCCCC
Confidence            65554444445664

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.67  E-value=1.9e-15  Score=129.11  Aligned_cols=175  Identities=12%  Similarity=-0.000  Sum_probs=126.6

Q ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch
Q psy17628         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP  170 (338)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~  170 (338)
                      +.++++|+|..+...+...+     ..........+.|.++++.|.+..+.+.......++.+++.++.+++.||+|+|+
T Consensus       197 ~~~~~l~~~~~~~~l~~~~l-----~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~  271 (382)
T TIGR00902       197 AFIALLKNPMNLRFLAAVCL-----IQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD  271 (382)
T ss_pred             hHHHHHcChHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH
Confidence            35667777643322221111     1222455666788888889999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHH-H
Q psy17628        171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI-L  249 (338)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~  249 (338)
                      .+.++.+...+....+.+.            ++.+..+....+.+..++....... .++.+. |++.|++++++.+. .
T Consensus       272 ~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~q~l~g~~~~~~~~~~~-~~i~~~-~~~~~~~~q~~~~~~~  337 (382)
T TIGR00902       272 LLLISAIACVGRWAIIGAI------------EAFPLIFLLQILHCGTFAVCHLAAM-RYIAAQ-PGSEIAKLQALYNALA  337 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhH------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhC-CHhhHHHHHHHHHHHH
Confidence            9999988888887666543            1224445556666666665555554 678887 99999999999764 5


Q ss_pred             HHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHH
Q psy17628        250 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT  285 (338)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (338)
                      ..++..+++.+.|.+.+..|. ..+...+++.+++.
T Consensus       338 ~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       338 MGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            678888999999999999885 45666666555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.67  E-value=4.6e-16  Score=134.20  Aligned_cols=164  Identities=10%  Similarity=-0.023  Sum_probs=126.1

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+++...          
T Consensus        31 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------  100 (406)
T PRK11551         31 LQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA----------  100 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------
Confidence            4456667788888899999999999999999999999999999999999999999888777776555443          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                        .+.+..++...+.+.+.+....... +++.|.+|++.|++++++.+....++..+++.+.+.+.+..+|+..+++.++
T Consensus       101 --~~~~~~~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (406)
T PRK11551        101 --WDFPSLLVARLLTGVGLGGALPNLI-ALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGV  177 (406)
T ss_pred             --ccHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence              1223344444555554444433333 7889999999999999999999999999998888777777888888877766


Q ss_pred             HHHHHHHHHHhhccCCC
Q psy17628        280 YCIIGTFFVYFVVPETK  296 (338)
Q Consensus       280 ~~~~~~~~~~~~~~~~~  296 (338)
                      +.++..++...++||++
T Consensus       178 ~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        178 GPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHhCCCCh
Confidence            66665555555677753

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.67  E-value=3.1e-15  Score=127.82  Aligned_cols=155  Identities=12%  Similarity=0.040  Sum_probs=97.4

Q ss_pred             HHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        123 VIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       123 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      ...|.+.++.+ .|++..+.+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+++...           .
T Consensus       218 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~-----------~  286 (382)
T PRK10091        218 WFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF-----------G  286 (382)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH-----------H
Confidence            34455555554 68899899999999999999999999999999999999888877766665444322           0


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cccceeehhhhHH
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA-FGTGVAFGTFAVY  280 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  280 (338)
                      +..+..++...+.+.+......+.......+..|.+.++.+  ..+....+|..++|.+.+.+.+. .+++..+...+++
T Consensus       287 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~  364 (382)
T PRK10091        287 GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALL  364 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHH
Confidence            01122222222232222222222221233444455555544  34667788999999999999885 5676667666555


Q ss_pred             HHHHHHHHHh
Q psy17628        281 CIIGTFFVYF  290 (338)
Q Consensus       281 ~~~~~~~~~~  290 (338)
                      +.+.......
T Consensus       365 ~~~~~~~~~~  374 (382)
T PRK10091        365 SFAAMSSLLL  374 (382)
T ss_pred             HHHHHHHHHH
Confidence            5554443333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.67  E-value=1.3e-15  Score=125.67  Aligned_cols=161  Identities=16%  Similarity=0.068  Sum_probs=140.9

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      -+.....+|.+-+|.|.|..+++...+.+.++..+++++...+.||+.||++++..+.++.++.++.++..         
T Consensus        29 Efv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp---------   99 (394)
T COG2814          29 EFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP---------   99 (394)
T ss_pred             HHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc---------
Confidence            44667788999999999999999999999999999999999999999999999999999999999888862         


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                         +.....+...+.+...+..+.... +...++.|+++|++++++......++..++.++..++-+.+|||.+|+..+.
T Consensus       100 ---~f~~Ll~aR~~~g~a~G~f~~i~~-~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~  175 (394)
T COG2814         100 ---SFAVLLLARALAGLAHGVFWSIAA-ALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAV  175 (394)
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHH
Confidence               233445555666666665554444 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q psy17628        280 YCIIGTFFVYFVVP  293 (338)
Q Consensus       280 ~~~~~~~~~~~~~~  293 (338)
                      +.++..+..+..+|
T Consensus       176 l~ll~~~~~~~~lP  189 (394)
T COG2814         176 LALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999988888888

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.67  E-value=8.4e-16  Score=134.11  Aligned_cols=164  Identities=12%  Similarity=0.046  Sum_probs=117.6

Q ss_pred             HHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhh
Q psy17628        123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG  202 (338)
Q Consensus       123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (338)
                      +....|.+.++ |++..+.++..+...++..+++++.|+++||+|||++++.+.++.+++.+.+.+....        ..
T Consensus        48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~--------~~  118 (452)
T PRK11273         48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--------TS  118 (452)
T ss_pred             HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc--------cc
Confidence            44566777666 9999999999999999999999999999999999999999988888877766553100        01


Q ss_pred             hchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHhcccceeehhhhHHH
Q psy17628        203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF-DDVERAFGTGVAFGTFAVYC  281 (338)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  281 (338)
                      +.+..++...+.+.+.+....+.. ..+.|.+|++.|++++++.+....+++.+.+++. .......+|++.|++.+++.
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~  197 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAA  197 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHH-HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            122334444455555554444444 5678999999999999998888888765544443 22333448888888877777


Q ss_pred             HHHHHHHHhhccCCC
Q psy17628        282 IIGTFFVYFVVPETK  296 (338)
Q Consensus       282 ~~~~~~~~~~~~~~~  296 (338)
                      ++..++..+++||++
T Consensus       198 ~~~~~l~~~~~~~~~  212 (452)
T PRK11273        198 ILVALFAFAMMRDTP  212 (452)
T ss_pred             HHHHHHHHHHccCCH
Confidence            776666666677654

>PRK10054 putative transporter; Provisional

Probab=99.66  E-value=1.6e-15  Score=129.87  Aligned_cols=165  Identities=14%  Similarity=0.074  Sum_probs=121.4

Q ss_pred             hcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy17628        117 FSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKL  195 (338)
Q Consensus       117 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (338)
                      ..+.+....+.|.+++ +.|++..+.++..+...+...+++++.|+++||+|||+++..+.+...++.+.+.+.      
T Consensus        20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~------   93 (395)
T PRK10054         20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV------   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH------
Confidence            3345666677777665 569999999999999999999999999999999999999998888777776655443      


Q ss_pred             ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628        196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFG  275 (338)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (338)
                            ++.+..++...+.+...+ ...+....+..|.+|++.|++++++.+...+++..++|.+.+.+.+ .+|+..|.
T Consensus        94 ------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~  165 (395)
T PRK10054         94 ------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFW  165 (395)
T ss_pred             ------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHH
Confidence                  111222333333333333 2233334678899999999999999999999999999999887764 68988888


Q ss_pred             hhhHHHHHHHHHHHhhccCC
Q psy17628        276 TFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~  295 (338)
                      +.+++.++..++..+..|+.
T Consensus       166 ~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        166 LAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            77766666655555545554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.66  E-value=7.8e-16  Score=132.07  Aligned_cols=180  Identities=15%  Similarity=0.123  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHH
Q psy17628        105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG  184 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  184 (338)
                      .+.+..........+........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.....++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~   83 (392)
T PRK10473          4 FLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL   83 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence            34444444555555566677788999999999999999999999999999999999999999999999998888777776


Q ss_pred             HHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDV  264 (338)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  264 (338)
                      .+...            .+.+..++...+.+.+.+.... ..+.++.|.+|++.|+++.++.+....++..++|.+.+.+
T Consensus        84 ~~~~~------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l  150 (392)
T PRK10473         84 LCSLA------------ETSSLFLAGRFLQGIGAGCCYV-VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI  150 (392)
T ss_pred             HHHHh------------CcHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65543            1112233334444444333233 3347889999999999999999999889988898888887


Q ss_pred             HHhcccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628        265 ERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      .+..+|+..+++.+.+..+..++..+..||+++
T Consensus       151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            788899888888887777777666666777643

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.66  E-value=6.3e-15  Score=127.06  Aligned_cols=209  Identities=15%  Similarity=0.083  Sum_probs=125.2

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||+.|++.   +++.++..+..++..||+++..   ++  +            ..    .          ++...++++.
T Consensus       166 w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~--~------------~~----~----------~~~~~~~~~~  211 (406)
T PRK15402        166 WRGMFVLF---AALAALSFFGLWRAMPETAGRV---GE--K------------LS----L----------KELGRDYKLV  211 (406)
T ss_pred             ccHHHHHH---HHHHHHHHHHHHHhCCCCCccc---cc--c------------cc----H----------HHHHHHHHHH
Confidence            99999998   6776665555566678875310   00  0            00    0          0011234566


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  174 (338)
                      ++++..+...+. ..+.    .........+.|.++.+ .|.+..+.+.......++.+++.++.++++||+++|+.+..
T Consensus       212 ~~~~~~~~~~~~-~~~~----~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~  286 (406)
T PRK15402        212 LKNRRFVAGALA-LGLV----SLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRM  286 (406)
T ss_pred             HcCcHHHHHHHH-HHHH----HHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            776633221111 1111    11122344556766544 58888777777777778888999999999999999999888


Q ss_pred             HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (338)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (338)
                      +..+..++..++........       ...++......+.+.+.+....... .... ..+++.||+..++.+....++.
T Consensus       287 ~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~g~g~~~~~~~~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~  357 (406)
T PRK15402        287 GLWPMVAGLLLAALATVISS-------HAYLWLTAGLSLYAFGIGLANAGLY-RLTL-FSSDVSKGTVSAAMGMLSMLIF  357 (406)
T ss_pred             HHHHHHHHHHHHHHHHHccc-------ccHHHHHHHHHHHHHHHHHHhhhHH-HHHh-hhccccccHHHHHHHHHHHHHH
Confidence            87777666665554321110       1122233334444444443332222 2222 2334789999999999999999


Q ss_pred             HHHHHHHHHHHHhcccce
Q psy17628        255 FVVVKTFDDVERAFGTGV  272 (338)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~  272 (338)
                      .+++.+.+.+.+..++..
T Consensus       358 ~~g~~~~~~l~~~~~~~~  375 (406)
T PRK15402        358 TVGIELSKHAYLGGGNGL  375 (406)
T ss_pred             HHHHHHHHhcccCCchHH
Confidence            999999988877766544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.66  E-value=2.4e-15  Score=129.22  Aligned_cols=241  Identities=12%  Similarity=0.135  Sum_probs=142.9

Q ss_pred             eechhhhhhhcch-----hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628          3 VSGILYTYVIGSL-----YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (338)
Q Consensus         3 ~~G~~~~~~i~~~-----Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~   77 (338)
                      ++|..+++.++..     ||+.|++.   ++++++..++.+...||+|+.       ++.++.    .+.          
T Consensus       143 ~~g~~~g~~~~g~l~~~~~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~~~----------  198 (396)
T TIGR00882       143 CVGWALCASIAGILFSIDPQIVFWLG---SGFALILMLLLMFAKPKAPSS-------ATVANA----LGA----------  198 (396)
T ss_pred             ccHHHHHHHHHhhhhccCchHHHHHH---HHHHHHHHHHHHHhCCCCchh-------hhhhcc----ccc----------
Confidence            3555556665554     99999999   777777555555555665421       000000    000          


Q ss_pred             HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc----cCCCCCcchhhHHHHHHHH
Q psy17628         78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT----NSKIISPNYGQNIVGFIQV  153 (338)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~  153 (338)
                           ++++.+..+.++.++++..+...+..+...     ..+.....+.+.++++.    +.+....+...+...+...
T Consensus       199 -----~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~  268 (396)
T TIGR00882       199 -----NASAFSLKLALELFRQRKFWMFVLYVVGVA-----CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNA  268 (396)
T ss_pred             -----ccCCCCHHHHHHHHcCCcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence                 000111234677788764332222211111     11223333445554443    3344455677777888888


Q ss_pred             HHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeecc
Q psy17628        154 IMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL  233 (338)
Q Consensus       154 ~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  233 (338)
                      ++.+..+++.||+|||+.+.++..+.++...+....            .+.+..+....+.+.+...... ....+..+.
T Consensus       269 ~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~  335 (396)
T TIGR00882       269 LIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------------TTALEVVILKMLHAFEVPFLLV-GCFKYITSQ  335 (396)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc------------CChHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            899999999999999999988877776655443321            1222333333333333322211 122456677


Q ss_pred             CCchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHh
Q psy17628        234 FTPDVKGLALGV-ICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF  290 (338)
Q Consensus       234 ~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (338)
                      .|++.++++.+. .+....+++.+++.+.|.+.+..|++..|.+.+++.++..++..+
T Consensus       336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            888888887766 567889999999999999999999988888877777766655443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.66  E-value=1.4e-15  Score=134.00  Aligned_cols=179  Identities=16%  Similarity=0.072  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHH
Q psy17628        105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG  184 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  184 (338)
                      .+....+..+.............|.+.++.|.+..+.++..+.+.++...+.++.|+++||+|||+++..+..+..++.+
T Consensus         7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~   86 (495)
T PRK14995          7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL   86 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            34444444444454566777889999999998999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTFDD  263 (338)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~  263 (338)
                      .++..            ++.+..++...+.+.+.+....... ..+.+.+ |++.|++++|+......++..++|.+.+.
T Consensus        87 ~~~~a------------~~~~~li~~r~l~G~g~~~~~~~~~-~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~  153 (495)
T PRK14995         87 AAAFS------------PTASWLIATRALLAIGAAMIVPATL-AGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGI  153 (495)
T ss_pred             HHHHc------------CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77664            1233444445555555443332222 4455554 78899999999999999999999999999


Q ss_pred             HHHhcccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        264 VERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      +.+..+|++.|++...+.++..++..+++|+.+
T Consensus       154 l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        154 LLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             hhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999998877777777666666677643

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.66  E-value=2.5e-15  Score=129.54  Aligned_cols=179  Identities=13%  Similarity=0.069  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628        104 ATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI  183 (338)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  183 (338)
                      +.+....+................|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~   91 (405)
T TIGR00891        12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGT   91 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            34444444444455556677778888888899999999999999999999999999999999999999999888888877


Q ss_pred             HHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        184 GALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDD  263 (338)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~  263 (338)
                      ++..+.            .+.+..++...+.+.+.+....... +++.|.+|+++|++++++.+....+|..+++.+.+.
T Consensus        92 ~~~~~~------------~~~~~l~~~~~l~G~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  158 (405)
T TIGR00891        92 LACGFA------------PGYITMFIARLVIGIGMGGEYGSSA-AYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHh------------ccHHHHHHHHHHHHhhhhhhhHHHH-HHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666543            1122334444555555444443333 788999999999999999999999999999998888


Q ss_pred             HHHhcc--cceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        264 VERAFG--TGVAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       264 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      +.+..+  |+..+.+.++..++ .++.....||++
T Consensus       159 l~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~  192 (405)
T TIGR00891       159 VVPVWGDGWRALFFISILPIIF-ALWLRKNIPEAE  192 (405)
T ss_pred             HHHhcCccHHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence            877666  87777654433333 333444466654

>TIGR00897 2A0118 polyol permease family

Probab=99.66  E-value=1e-14  Score=125.50  Aligned_cols=162  Identities=15%  Similarity=0.122  Sum_probs=111.1

Q ss_pred             chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHH-HHhHHHHHHHHHHHHHHHHhhccc
Q psy17628        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL-ISDICMAICIGALGYYFYLLKLDE  197 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  197 (338)
                      +.+....+.|.+.++.|++..+.+.......++..++.++.|+++||+|||+.+. .+.+...++.+.+.......    
T Consensus       237 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~----  312 (402)
T TIGR00897       237 GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF----  312 (402)
T ss_pred             HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc----
Confidence            3556778899999888999888888888889999999999999999999988764 23333333322222211000    


Q ss_pred             chhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhh
Q psy17628        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTF  277 (338)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (338)
                         ....+..++...+.+.+.+. ..+.. ..+.|..| +.|++++|+.+....+++.++|.+.+.+.+..|+...+++.
T Consensus       313 ---~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~  386 (402)
T TIGR00897       313 ---GHSFAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIF  386 (402)
T ss_pred             ---CCcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence               00112222333333333332 23333 45567655 57999999999999999999999999999999988888888


Q ss_pred             hHHHHHHHHHHHh
Q psy17628        278 AVYCIIGTFFVYF  290 (338)
Q Consensus       278 ~~~~~~~~~~~~~  290 (338)
                      +++.++..++..+
T Consensus       387 a~~~~i~~~~~~~  399 (402)
T TIGR00897       387 AALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777776655544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.66  E-value=1.1e-15  Score=134.87  Aligned_cols=174  Identities=15%  Similarity=0.071  Sum_probs=135.4

Q ss_pred             HHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHH
Q psy17628        110 GLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYY  189 (338)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~  189 (338)
                      .+..+.............|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.++.+..+..++.+++...
T Consensus         8 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   87 (485)
T TIGR00711         8 MLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA   87 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc
Confidence            33333344445567778899999999999999999999999999999999999999999999999988888887766543


Q ss_pred             HHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628        190 FYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG  269 (338)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (338)
                                  .+....++...+.+.+.+.. .+....++.|.+|++.|++++++......++..+++.+.+.+.++.+
T Consensus        88 ------------~~~~~l~~~~~~~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  154 (485)
T TIGR00711        88 ------------PNLELMIIFRVIQGFGGGPL-IPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH  154 (485)
T ss_pred             ------------CCHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence                        12233344444444444433 33444788999999999999999999999999999999999999999


Q ss_pred             cceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        270 TGVAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      |++.|++.+.+.++..++..+..||++
T Consensus       155 w~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       155 WRWIFLINVPIGIIVVVVAFFILPRDK  181 (485)
T ss_pred             ceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence            999998877777766666666666643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.65  E-value=1.7e-15  Score=129.33  Aligned_cols=164  Identities=13%  Similarity=0.070  Sum_probs=128.7

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++....          
T Consensus        19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~----------   88 (382)
T PRK10091         19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS----------   88 (382)
T ss_pred             HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh----------
Confidence            4456677888888999999999999999999999999999999999999999999999888887766654          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                        ++.+..++...+.+.+.+....... .++.|.+|+++|+.++++......++..+++.+.+.+.+..+|++.+.+.+.
T Consensus        89 --~~~~~l~~~r~l~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~  165 (382)
T PRK10091         89 --SSYLMLAIGRLVSGFPHGAFFGVGA-IVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAV  165 (382)
T ss_pred             --CcHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHH
Confidence              1233444444455544443333233 5778999999999999998888889999999998888888899999988877


Q ss_pred             HHHHHHHHHHhhccCCC
Q psy17628        280 YCIIGTFFVYFVVPETK  296 (338)
Q Consensus       280 ~~~~~~~~~~~~~~~~~  296 (338)
                      +.++..+..+...||.+
T Consensus       166 ~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        166 FNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHHhCCCCC
Confidence            77666655556677753

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.65  E-value=7e-15  Score=124.94  Aligned_cols=133  Identities=10%  Similarity=-0.008  Sum_probs=101.6

Q ss_pred             HhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhh
Q psy17628        125 FYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL  203 (338)
Q Consensus       125 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (338)
                      .+.|.+.++ .|.+..+.+.......++.+++.++.+++.||++||+.+..+..+.+++.......           ..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~  300 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-----------PPN  300 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-----------chh
Confidence            677888776 58888888999999999999999999999999999999888766666665544432           001


Q ss_pred             chHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG  269 (338)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (338)
                      .+...+...+.+.+.+.... ...+++.|.+|++.|+++.|+.+....++..+++.+.+.+.+..|
T Consensus       301 ~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       301 FPLFLVLWFAIGVGYGPINV-PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            23334444455555444433 333788999999999999999999999999999999999888654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.65  E-value=6.9e-15  Score=120.20  Aligned_cols=228  Identities=19%  Similarity=0.263  Sum_probs=162.3

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||.+..+.   .+..++..++.++.+.|.|......+                                 +.....++.+
T Consensus       171 w~~~~~i~---~~~l~v~~v~~~~~~~d~p~~r~~~~---------------------------------~~~~~~~~~v  214 (417)
T COG2223         171 WRNVAGIY---VVALAIAAVLAWLGMNDVPEHRASVK---------------------------------PQLPAQLKAV  214 (417)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHhCCChhhhcccc---------------------------------ccchhHHHHH
Confidence            88888888   56666667778888888874211100                                 0000345566


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  174 (338)
                      ++++..|     .+.+.++.++.++..+..++|.++++. |.+..+++.......+...+..+++|+++||+|.++++.+
T Consensus       215 ~~~~~~W-----~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~  289 (417)
T COG2223         215 FSNKDTW-----LLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLA  289 (417)
T ss_pred             hcCcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHH
Confidence            6665332     233334444555667888899888776 9999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (338)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (338)
                      ....++++..+..........     ..+....+..+.....+.+.+.+.+. .+++.++|. +-|...|+....+.+|+
T Consensus       290 ~f~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~l~l~~~~G~GnGsvf-k~Ip~if~~-~~G~v~G~vga~G~lGG  362 (417)
T COG2223         290 VFVGMALAAALLSLFLTGFGH-----GGSFVVFVAVFLALFVFAGLGNGSVF-KMIPVIFPK-ETGAVTGIVGAIGGLGG  362 (417)
T ss_pred             HHHHHHHHHHHHHcccccccc-----CcchHHHHHHHHHHHHHhccCcchhe-eechHHHHh-hhhHHHHHHHHhccccc
Confidence            988888887776654211110     12233444445555556666666555 888888886 56888999999999999


Q ss_pred             HHHHHHHHHHHHhcc-cceeehhhhHHHHHHHHHHHhh
Q psy17628        255 FVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFV  291 (338)
Q Consensus       255 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  291 (338)
                      +..|...+...+.+| +...|+++..+.+++.++.+..
T Consensus       363 f~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         363 FFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             cchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988 5557777777777777666553

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.65  E-value=3.9e-15  Score=130.47  Aligned_cols=165  Identities=15%  Similarity=-0.029  Sum_probs=117.4

Q ss_pred             hhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy17628        116 SFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKL  195 (338)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (338)
                      .....+....+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.      
T Consensus        48 ~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~------  121 (476)
T PLN00028         48 CFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV------  121 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh------
Confidence            33334556667788888899999999988888899999999999999999999999988887777776655543      


Q ss_pred             ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q psy17628        196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER---------  266 (338)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  266 (338)
                            .+....++...+.+++.+. ..+.. .+++|.+|++.|++++|+.+..+.+++.+++.+.+.+..         
T Consensus       122 ------~s~~~l~~~r~l~G~~~~~-~~~~~-~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~  193 (476)
T PLN00028        122 ------SSATGFIAVRFFIGFSLAT-FVSCQ-YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPS  193 (476)
T ss_pred             ------cCHHHHHHHHHHHHHHHHh-hHHHH-HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence                  1122233334444444332 22333 467899999999999999988777777776665544322         


Q ss_pred             hcccceeehhhhHHHHHHHHHHHhhccC
Q psy17628        267 AFGTGVAFGTFAVYCIIGTFFVYFVVPE  294 (338)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (338)
                      ..||++.|++.+++.++..++.+++.++
T Consensus       194 ~~gWr~~f~i~g~l~l~~~l~~~~~~~~  221 (476)
T PLN00028        194 FTAWRIAFFVPGLLHIIMGILVLTLGQD  221 (476)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            2479999988888777766555554433

>PRK12382 putative transporter; Provisional

Probab=99.65  E-value=1.2e-14  Score=124.85  Aligned_cols=155  Identities=15%  Similarity=0.133  Sum_probs=111.9

Q ss_pred             HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      ....+.+.++++.|++  +.+.......++.+++.++.|++.||+|+|+.+..+..+.+++.+++...            
T Consensus       234 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------------  299 (392)
T PRK12382        234 VIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA------------  299 (392)
T ss_pred             HHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc------------
Confidence            4556667777776654  34555666777788899999999999999999888877777766544332            


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC  281 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (338)
                      .+.+..+....+.+.+.+....... ..+.|.+|++.||++.|+.+....++..++|.+.+.+.+..||+..+.+.+++.
T Consensus       300 ~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~  378 (392)
T PRK12382        300 PTAWVALAGAALTGAGCSLIFPALG-VEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISA  378 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHhHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            1122333334444444443333333 567788999999999999999999999999999999999999988888888777


Q ss_pred             HHHHHHHHhh
Q psy17628        282 IIGTFFVYFV  291 (338)
Q Consensus       282 ~~~~~~~~~~  291 (338)
                      ++..++.++.
T Consensus       379 ~~~~~~~~~~  388 (392)
T PRK12382        379 VLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHhh
Confidence            7666555543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.64  E-value=2.6e-15  Score=126.79  Aligned_cols=164  Identities=13%  Similarity=-0.046  Sum_probs=123.7

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      +..+....|.+.++.|.+..+.++..+...++..+++++.|+++||+|||+++.........+.. ....          
T Consensus         7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~----------   75 (368)
T TIGR00903         7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD----------   75 (368)
T ss_pred             HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH----------
Confidence            44566778888999999999999999999999999999999999999999876655443333221 1111          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                       ..+....++...+.+.+.+. ..+.. ..++|.+|+++|++++++......+|..+++.+.+.+.+..||+..|.+.++
T Consensus        76 -~~~~~~l~~~R~l~G~g~~~-~~~~~-~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~  152 (368)
T TIGR00903        76 -PFNYEWLLACQLLAALGQPF-LLNAF-APAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAA  152 (368)
T ss_pred             -hccHHHHHHHHHHHHhHhHH-HHHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence             01223444455555555443 22222 4568999999999999999999999999999999999889999999988888


Q ss_pred             HHHHHHHHHHhhccCCCC
Q psy17628        280 YCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~  297 (338)
                      +.++..++.++++||+++
T Consensus       153 l~~~~~~~~~~~lp~~p~  170 (368)
T TIGR00903       153 VAAAGIILVLAALPALPF  170 (368)
T ss_pred             HHHHHHHHHHHHcCCCCC
Confidence            888877777777888643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.64  E-value=5.7e-16  Score=132.31  Aligned_cols=164  Identities=12%  Similarity=0.074  Sum_probs=126.6

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+++...          
T Consensus        11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------   80 (379)
T TIGR00881        11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS----------   80 (379)
T ss_pred             HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----------
Confidence            4456667788888889999999999999999999999999999999999999999998888887776654          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHhcccceeehhhh
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK-TFDDVERAFGTGVAFGTFA  278 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  278 (338)
                        .+.+..++...+.+.+.+.... ...+++.|.+|+++|++++++.+....++..+++. +...+.+..+|+..+++.+
T Consensus        81 --~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (379)
T TIGR00881        81 --TSLWVMAALWALNGIFQGMGWP-PCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPG  157 (379)
T ss_pred             --hhHHHHHHHHHHHHhhccccCC-chHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence              1223344444455554444433 44478999999999999999999999999989884 5555666778988888777


Q ss_pred             HHHHHHHHHHHhhccCCC
Q psy17628        279 VYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~  296 (338)
                      .+.++..++.+++.+|++
T Consensus       158 ~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       158 IIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             HHHHHHHHHHheeeCCCc
Confidence            777666666666666654

>KOG1330|consensus

Probab=99.64  E-value=5.2e-16  Score=127.84  Aligned_cols=166  Identities=16%  Similarity=0.072  Sum_probs=135.0

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      -+.+..-.+.+-+..|.+.+..+++.....++.+++++++|+++||+.|++++.+|..+..++.++.++.          
T Consensus        49 r~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs----------  118 (493)
T KOG1330|consen   49 RYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS----------  118 (493)
T ss_pred             hhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH----------
Confidence            4444445555556668899999999999999999999999999999999999999999999998888775          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cceeehhhh
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFA  278 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  278 (338)
                        ...|.+.+...+.+.+-+.. .++...+++|.+|.++|++++++.++...+|+.++-.....+.+..+ ||+.|...+
T Consensus       119 --~~Fwq~~l~R~~vGiGeAs~-~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~a  195 (493)
T KOG1330|consen  119 --NHFWQVLLCRGFVGIGEASY-SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSA  195 (493)
T ss_pred             --HHHHHHHHHHHHhccchhhh-cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeeh
Confidence              12345555566666665544 44444899999999999999999999999988777666666666666 999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCC
Q psy17628        279 VYCIIGTFFVYFVVPETKNK  298 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~  298 (338)
                      ++.++++++..++.+|..++
T Consensus       196 vl~vi~~~L~~~f~~eP~rg  215 (493)
T KOG1330|consen  196 VLGVIVGLLVFLFVREPERG  215 (493)
T ss_pred             HHHHHHHHHHHhhccCcccc
Confidence            99999999998888887654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.63  E-value=4.2e-15  Score=131.06  Aligned_cols=138  Identities=9%  Similarity=-0.079  Sum_probs=103.4

Q ss_pred             hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ......+.|.++++. |+++.+++.......++..++.++.|++.||+|+|+.+..+.++.+++.+.+...   ..    
T Consensus       275 ~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~---~~----  347 (495)
T PRK14995        275 LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT---DF----  347 (495)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh---cC----
Confidence            445667788888775 9999999999999999999999999999999999998888877776665544332   00    


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA  267 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (338)
                        ....+.......+.+.+.+....+.. ..+.+..|++.++.+.++.+....+|+.+++.+.+.+.+.
T Consensus       348 --~~~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        348 --STQQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             --CCchHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              01122333344555555554444444 5667788999999999999999999999999998887653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.63  E-value=2.4e-14  Score=122.23  Aligned_cols=189  Identities=17%  Similarity=0.157  Sum_probs=120.8

Q ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch
Q psy17628         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP  170 (338)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~  170 (338)
                      +.++.+|+|..|...+     .++..+.++..+..+.|++.++. ++.........+..+...+..+++|+++||+|+|+
T Consensus       244 ~~~~vlk~~~~Wllsl-----ly~~tFG~fvg~s~~lp~~~~~~-~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~  317 (462)
T PRK15034        244 DQLPVLQRLHLWLLSL-----LYLATFGSFIGFSAGFAMLAKTQ-FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR  317 (462)
T ss_pred             HHHHHhCCCchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH
Confidence            4556778775332222     22333334556677888887663 33333333344456778888899999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc--------------
Q psy17628        171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP--------------  236 (338)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--------------  236 (338)
                      ++.++.+.+.++........  ....    ..+.+.....+.......+.+.+.+. .++.+.+|+              
T Consensus       318 vl~~~~i~~~i~~~~~~l~l--p~~~----~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~~~~~~~~~~~~  390 (462)
T PRK15034        318 VTLINFIFMAIFSALLFLTL--PGTG----SGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITIYRVKMKGGSDE  390 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--cccc----ccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhhhcccccccchh
Confidence            99988877777654433321  1000    01222333333333345555555554 677788874              


Q ss_pred             -------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ceeehhhhHHHHHHHHHHHhhc
Q psy17628        237 -------DVKGLALGVICILGSLIEFVVVKTFDDVERAFGT-GVAFGTFAVYCIIGTFFVYFVV  292 (338)
Q Consensus       237 -------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  292 (338)
                             ++-|.+.|+....+.+|+++.|.+++...+.+|. ...++.+.+..+++.++.+++.
T Consensus       391 ~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        391 QAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence                   1457888899999999999999999988887764 3467777778888887777654

>PRK10504 putative transporter; Provisional

Probab=99.63  E-value=5.2e-15  Score=130.11  Aligned_cols=170  Identities=11%  Similarity=0.010  Sum_probs=129.7

Q ss_pred             HHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHH
Q psy17628        113 CFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYL  192 (338)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~  192 (338)
                      .+......+....+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||++++.+..+.+++.+.+...   
T Consensus        19 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---   95 (471)
T PRK10504         19 FFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS---   95 (471)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh---
Confidence            33344445567778999999999999998999999999999999999999999999999998877777776654432   


Q ss_pred             hhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccce
Q psy17628        193 LKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGV  272 (338)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (338)
                               .+.+..++...+.+.+.+... +....++.|.+|++.|+++.++.+....++..++|.+.+.+.+..+|++
T Consensus        96 ---------~~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~  165 (471)
T PRK10504         96 ---------GTLNELLLARVLQGVGGAMMV-PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHW  165 (471)
T ss_pred             ---------CCHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHH
Confidence                     122333444555555444333 3344678899999999999999999999999999999999999999999


Q ss_pred             eehhhhHHHHHHHHHHHhhccCC
Q psy17628        273 AFGTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~  295 (338)
                      .|.+...+..+..+......|+.
T Consensus       166 ~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        166 IFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCc
Confidence            88887766666665555555543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.63  E-value=4.5e-15  Score=128.89  Aligned_cols=157  Identities=14%  Similarity=0.060  Sum_probs=120.9

Q ss_pred             HHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHH
Q psy17628        108 IVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALG  187 (338)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~  187 (338)
                      ...+................|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.+..+++.+...
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~  101 (426)
T PRK12307         22 SAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG  101 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            33333333334455566677777788899999999999999999999999999999999999999999998888877666


Q ss_pred             HHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628        188 YYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA  267 (338)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (338)
                      +.            .+.+..++...+.+.+.+....... .++.|.+|++.|+++.++......+|..+++.+.+.+.+.
T Consensus       102 ~~------------~~~~~l~~~r~l~G~g~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~  168 (426)
T PRK12307        102 LA------------SGVIMLTLSRFIVGMGMAGEYACAS-TYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA  168 (426)
T ss_pred             HH------------hHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence            54            1223444455555555444333333 6889999999999999999998899999999888888888


Q ss_pred             cccceeehhh
Q psy17628        268 FGTGVAFGTF  277 (338)
Q Consensus       268 ~~~~~~~~~~  277 (338)
                      .+|++.+++.
T Consensus       169 ~~w~~~f~i~  178 (426)
T PRK12307        169 YGWRAAFFVG  178 (426)
T ss_pred             CCHHHHHHHH
Confidence            8998887664

>PRK03699 putative transporter; Provisional

Probab=99.63  E-value=4.3e-15  Score=127.47  Aligned_cols=157  Identities=8%  Similarity=-0.061  Sum_probs=110.0

Q ss_pred             hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      .+....|.|.++++ .|++..+.+...+...++..++.++.|+++||++||+.+.....+..+...++...         
T Consensus       221 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~---------  291 (394)
T PRK03699        221 QLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT---------  291 (394)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc---------
Confidence            45667889998865 49999999999999999999999999999999999998877665555443333221         


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                         .+.........+.+++.+..+.... ++..|..|. .++...+.....+.+|..++|.+.+.+.+..|++..++..+
T Consensus       292 ---~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~  366 (394)
T PRK03699        292 ---DDPSHLLYAILGLGFFSSAIYTTII-TLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTAN  366 (394)
T ss_pred             ---CCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhH
Confidence               1112222333333333332222222 455666653 46777888888899999999999999999999988888777


Q ss_pred             HHHHHHHHHHHh
Q psy17628        279 VYCIIGTFFVYF  290 (338)
Q Consensus       279 ~~~~~~~~~~~~  290 (338)
                      ++..++.+.+..
T Consensus       367 ~~~~~~~~~~~~  378 (394)
T PRK03699        367 GLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHHHHHH
Confidence            776666544433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.63  E-value=1.4e-14  Score=125.17  Aligned_cols=163  Identities=18%  Similarity=0.152  Sum_probs=121.8

Q ss_pred             chHHHHHhhHHHHHhccCCCCCc-----chhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHh
Q psy17628        119 GINVVIFYLKRILIATNSKIISP-----NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLL  193 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~  193 (338)
                      +......+.|.+.++.|.+..+.     +...+...+...++.++.|+++||+|||+.+..+....+++.+++...    
T Consensus        29 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----  104 (408)
T PRK09874         29 AFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA----  104 (408)
T ss_pred             HHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH----
Confidence            45566778888888888876553     677788889999999999999999999999998887777776655432    


Q ss_pred             hcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccee
Q psy17628        194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVA  273 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (338)
                              .+.+..++...+.+.+.+  ..+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+|+..
T Consensus       105 --------~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  174 (408)
T PRK09874        105 --------QNIWQFLILRALLGLLGG--FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPV  174 (408)
T ss_pred             --------hhHHHHHHHHHHHHHhhh--hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence                    112233333344443322  2233335778889999999999999999999999999999998888899988


Q ss_pred             ehhhhHHHHHHHHHHHhhccCC
Q psy17628        274 FGTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~  295 (338)
                      +++.+.+.++..+..+++.+|.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        175 FFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccC
Confidence            8888777776666666666664

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.63  E-value=6.5e-15  Score=128.34  Aligned_cols=205  Identities=11%  Similarity=0.022  Sum_probs=124.0

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||+.+.+.   +++.++..++.++.+||.++.    .+.++                          +++...+..++++
T Consensus       172 ~~~~~~i~---~~l~~~~~~~~~~~~~e~~~~----~~~~~--------------------------~~~~~~~~~~~~l  218 (437)
T TIGR00792       172 WFMFALVL---ALIGVVSLIICFFGTKERYSE----IPKNI--------------------------EKKLSLKQIFKAL  218 (437)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHcCCEecCCC----CCccc--------------------------ccCCCHHHHHHHH
Confidence            99999999   788877666677778886520    00000                          0000112345566


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  174 (338)
                      ++++..+...+ ..++..    .+......+.+++.+.. + +....+.......++.+++.++.++++||+|+|+.+..
T Consensus       219 ~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~  292 (437)
T TIGR00792       219 FKNDQLLILCL-AYLFYN----LAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAG  292 (437)
T ss_pred             hCCHHHHHHHH-HHHHHH----HHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            66653332221 111111    11223333344444433 3 34445566677788899999999999999999999988


Q ss_pred             HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCC-------chhhhhHHHHHH
Q psy17628        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-------PDVKGLALGVIC  247 (338)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~  247 (338)
                      +..+.+++.+.+.+.           ..+.+...+...+.+++.+... +..+++++|..|       ++.+|++.|+.+
T Consensus       293 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  360 (437)
T TIGR00792       293 GILLMVLGYLIFFFA-----------GSNLPLILVLIILAGFGQNFVT-GLVWALVADTVDYGEWKTGVRAEGLVYSVRT  360 (437)
T ss_pred             HHHHHHHHHHHHHHc-----------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCccchHHHHHHHH
Confidence            877777665544332           0111223333334444444333 333466777654       456799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccc
Q psy17628        248 ILGSLIEFVVVKTFDDVERAFGTG  271 (338)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~  271 (338)
                      ....++..+++.+.+.+.+..|+.
T Consensus       361 ~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       361 FVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999998887764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.63  E-value=5e-15  Score=127.56  Aligned_cols=164  Identities=13%  Similarity=0.097  Sum_probs=126.0

Q ss_pred             HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      .....-+|.+.++.|.+..+.++..+.+.++..++.++.|+++||+|||++++.+..+.+++.+.+...           
T Consensus        33 ~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----------  101 (413)
T PRK15403         33 DLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-----------  101 (413)
T ss_pred             HhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----------
Confidence            344445566677788898999999999999999999999999999999999999988888877666553           


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY  280 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (338)
                       .+.+..++...+.+.+.+. ..+..+.++.|.+|++.|++++++.+....++..++|.+.+.+.+..||++.|++.+++
T Consensus       102 -~~~~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~  179 (413)
T PRK15403        102 -TSMTQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVM  179 (413)
T ss_pred             -CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence             1223344444555444432 23333467889999999999999999999999999998888888888999999888877


Q ss_pred             HHHHHHHHHhhccCCCC
Q psy17628        281 CIIGTFFVYFVVPETKN  297 (338)
Q Consensus       281 ~~~~~~~~~~~~~~~~~  297 (338)
                      .++..+..++.+||+++
T Consensus       180 ~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        180 GLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHhCCCCcc
Confidence            77766555566787643

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.63  E-value=3.2e-15  Score=130.03  Aligned_cols=164  Identities=11%  Similarity=0.045  Sum_probs=119.9

Q ss_pred             HHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhh
Q psy17628        123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG  202 (338)
Q Consensus       123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (338)
                      .....|.+. +.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+........        ..
T Consensus        46 ~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  116 (438)
T TIGR00712        46 FALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA--------TS  116 (438)
T ss_pred             HHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc--------cc
Confidence            344556554 469999999999999999999999999999999999999998888877776655432100        01


Q ss_pred             hchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcccceeehhhhHHH
Q psy17628        203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-AFGTGVAFGTFAVYC  281 (338)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  281 (338)
                      +.....+...+.+.+.+..+.+.. ..+.|.+|+++|++++++.+....+++.+++.+.+...+ ..+|+..|++.+++.
T Consensus       117 ~~~~l~~~~~l~g~~~g~~~~~~~-~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~  195 (438)
T TIGR00712       117 SIAIMFVLLFLNGWFQGMGWPPCG-RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICA  195 (438)
T ss_pred             hHHHHHHHHHHHHHHhhcchHHHH-HHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            112223334444545444444444 677899999999999999999999999888887765444 468999888888887


Q ss_pred             HHHHHHHHhhccCCC
Q psy17628        282 IIGTFFVYFVVPETK  296 (338)
Q Consensus       282 ~~~~~~~~~~~~~~~  296 (338)
                      ++..++.+++.||++
T Consensus       196 ~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       196 IIVALFAFAMMRDTP  210 (438)
T ss_pred             HHHHHHHHHhccCCH
Confidence            777666666677653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10504 putative transporter; Provisional

Probab=99.62  E-value=1.2e-14  Score=127.75  Aligned_cols=141  Identities=13%  Similarity=0.050  Sum_probs=101.9

Q ss_pred             hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ......+.|++++. .|.++.+.++......++..++.++.++++||+|||+++..+..+.++...++....  .     
T Consensus       277 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~-----  349 (471)
T PRK10504        277 SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA--L-----  349 (471)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc--c-----
Confidence            44556677888875 588888888888888888888889999999999999999888777776655544320  0     


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT  270 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (338)
                        ....+.......+.+.+.+....+.. .+..+..|++.|++++++.++...++..+++.+.+.+.+..++
T Consensus       350 --~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        350 --LGWYYLLPFVLFLQGMVNSTRFSSMN-TLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             --cccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence              01111122223333344444444444 6677889999999999999999999999999999988876665

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.62  E-value=9e-15  Score=126.10  Aligned_cols=165  Identities=13%  Similarity=0.013  Sum_probs=124.7

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ...+....|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+....+++.+.....          
T Consensus        29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------   98 (406)
T PRK15402         29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA----------   98 (406)
T ss_pred             hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------
Confidence            4455556677888889999999999999999999999999999999999999999888887777665543          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                        .+.+..+....+.+.+.+.. .+.....+.|.+|++.|+++.++......++..++|.+.+.+.+..+|++.+++.++
T Consensus        99 --~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~  175 (406)
T PRK15402         99 --QSIEQFTLLRFLQGIGLCFI-GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAA  175 (406)
T ss_pred             --ccHHHHHHHHHHHHhHhhhH-HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence              11223333334444333322 233346788999999999999988888888888999998888888899998888777


Q ss_pred             HHHHHHHHHHhhccCCCC
Q psy17628        280 YCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~  297 (338)
                      +.++..+..++..||+++
T Consensus       176 ~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        176 LAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHhCCCCCc
Confidence            777766655566777643

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.62  E-value=4.6e-14  Score=120.89  Aligned_cols=149  Identities=9%  Similarity=0.002  Sum_probs=94.3

Q ss_pred             HHHh-hHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        123 VIFY-LKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       123 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      ...+ .|.+.++.|++..+.+......+++.+++.++.+++.||.++ +.+..+..+..+....+...           .
T Consensus       235 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~-----------~  302 (394)
T PRK10213        235 FFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLW-----------G  302 (394)
T ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHH-----------h
Confidence            3444 466777779998888998999999999999999999999644 44333333333322222211           0


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC  281 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (338)
                      ...+.......+.+.+.+....... +++.+..|+ .++...++......++..+++.+.|.+.+..|++..+...+.+.
T Consensus       303 ~~~~~~~~~~~l~G~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~  380 (394)
T PRK10213        303 SDKIVATGVAIIWGLTFALVPVGWS-TWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLM  380 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence            1123333344445545444433333 456676774 45666777777788899999999999999888766665554444


Q ss_pred             HHHH
Q psy17628        282 IIGT  285 (338)
Q Consensus       282 ~~~~  285 (338)
                      .+..
T Consensus       381 ~~~~  384 (394)
T PRK10213        381 LLTA  384 (394)
T ss_pred             HHHH
Confidence            4333

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.62  E-value=7.2e-15  Score=128.93  Aligned_cols=152  Identities=11%  Similarity=-0.031  Sum_probs=117.6

Q ss_pred             hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHH
Q psy17628        133 ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA  212 (338)
Q Consensus       133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (338)
                      +.+++..+.+...+.+.++..++.++.|+++||+|||+.+..+.++.+++.++.....          ....+..++...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~  139 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA----------GGGIALVVFCRV  139 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH----------HcCchHHHHHHH
Confidence            4577888889999999999999999999999999999999998887777766543321          011233444455


Q ss_pred             HHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccceeehhhhHHHHHHHHHHHhh
Q psy17628        213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF-GTGVAFGTFAVYCIIGTFFVYFV  291 (338)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  291 (338)
                      +.+.+.+....... .+++|.+|++.|++++++......+|..+++.+.+.+.+.. +|+..|++.+++.++..++.+.+
T Consensus       140 ~~G~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       140 IQGLAQGSVSPATH-KIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             HHHHhcccchhhHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence            55555554444343 78999999999999999999999999999999999998884 99999998888777766555555


Q ss_pred             ccCC
Q psy17628        292 VPET  295 (338)
Q Consensus       292 ~~~~  295 (338)
                      .+|.
T Consensus       219 ~~~~  222 (465)
T TIGR00894       219 PADD  222 (465)
T ss_pred             hcCC
Confidence            5543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.62  E-value=2.3e-15  Score=127.25  Aligned_cols=163  Identities=17%  Similarity=0.127  Sum_probs=125.7

Q ss_pred             hHHHHHhhH-HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLK-RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ........| .+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+...+.         
T Consensus        12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---------   82 (352)
T PF07690_consen   12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA---------   82 (352)
T ss_dssp             HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---------
Confidence            445556667 6667779999999999999999999999999999999999999999988888884444432         


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                         .+.+..++...+.+.+.+....... .++.|.+|+++|++++++......++..+++.+.+.+.+..+|+..+++.+
T Consensus        83 ---~~~~~~~~~~~l~g~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~  158 (352)
T PF07690_consen   83 ---SNFWLLLIARFLLGIGSGFFSPASN-ALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA  158 (352)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred             ---hhHHHHhhhcccccccccccccccc-ccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence               1223445555555555544444444 789999999999999999999999999999999998888889999999888


Q ss_pred             HHHHHHHHHHHhhccCC
Q psy17628        279 VYCIIGTFFVYFVVPET  295 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~  295 (338)
                      ++.++..++...+.+++
T Consensus       159 ~~~~~~~il~~~~~~~~  175 (352)
T PF07690_consen  159 ILSLIAAILFILFLPEP  175 (352)
T ss_dssp             HHHHHHHHHHHCCC---
T ss_pred             chhhhhhhhHhhhhhhc
Confidence            88888776544445443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.61  E-value=2.2e-14  Score=122.94  Aligned_cols=200  Identities=15%  Similarity=0.074  Sum_probs=121.8

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||+.|++.   +++.++..++.+++.||+++.    ++.+              +              .++...++++.
T Consensus       158 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~--------------~--------------~~~~~~~~~~~  202 (385)
T TIGR00710       158 WHAIFAFL---SLAGILLSALIFFILPETLPY----EARI--------------Q--------------ISTYFETFLLL  202 (385)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHhCCCCCCC----cccC--------------C--------------HHHHHHHHHHH
Confidence            99999998   777776666666677876531    0000              0              00111234556


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  174 (338)
                      ++++..+...+....     ..........+.|.+++ +.|.++.+.+.......++.+++.++.|++.||+|||+.+..
T Consensus       203 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~  277 (385)
T TIGR00710       203 LKSKMFWGYALIYGA-----SFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRM  277 (385)
T ss_pred             HcCchhHHHHHHHHH-----HHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            666543322221111     11123455666777766 458888888889999999999999999999999999999888


Q ss_pred             HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (338)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (338)
                      +..+..++..++........       ...........+.+.+.+....... ....|..| +.|+++.++.+.....++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~-~~~g~~~~~~~~~~~~~g  348 (385)
T TIGR00710       278 GLILFAVSAVLLEITAILGL-------GSWAMIIGPMMFVGIGNSMISSIAM-AYALEDFP-HVAGTASALFGTLRLVLG  348 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCc-ccchHHHHHHHHHHHHHH
Confidence            87776666555443311110       0111222223333333443333333 56677777 578999999988887777


Q ss_pred             HHHHHHHHHH
Q psy17628        255 FVVVKTFDDV  264 (338)
Q Consensus       255 ~~~~~~~~~~  264 (338)
                      .+.+.+.+..
T Consensus       349 ~i~~~~~~~~  358 (385)
T TIGR00710       349 AIVGYLVSLI  358 (385)
T ss_pred             HHHHHHHHhc
Confidence            7777766643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.61  E-value=3.5e-14  Score=122.21  Aligned_cols=222  Identities=10%  Similarity=-0.001  Sum_probs=121.8

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||..|++.   +++.++ ..+..+++||+++.   +++.++                 .          +++.+.+++++
T Consensus       160 w~~~f~i~---a~~~l~-~~l~~~~~~e~~~~---~~~~~~-----------------~----------~~~~~~~~~~l  205 (402)
T PRK11902        160 WGNTYLLM---AGLMLA-GALTTLWAPEPEVP---ARPPRS-----------------L----------GEAVVGPLRDF  205 (402)
T ss_pred             HHHHHHHH---HHHHHH-HHHHHHhcCCCccc---ccccch-----------------h----------HHHHHHHHHHH
Confidence            99999998   666655 33445667886531   000000                 0          00112346677


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHH-HHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVG-FIQVIMTFFSSLLVDKAGRRPLLLI  174 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~  174 (338)
                      +++|..+...+...+......    .......+.+.++.|++..+.++.....+ ++.+++.++++++.||+|+|+.+..
T Consensus       206 ~~~~~~~~~l~~~~l~~~~~~----~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~  281 (402)
T PRK11902        206 FSRRGAWALLLLIVLYKLGDA----FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLML  281 (402)
T ss_pred             HhCcCHHHHHHHHHHHHhHHH----HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            887744332222222221111    11112233444557888888887775554 4688999999999999999998877


Q ss_pred             HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHH----HHHhhcccccccceeeeeccCCchhhhhHHHHHHHHH
Q psy17628        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI----YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG  250 (338)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  250 (338)
                      +.....+..+.+.......        .+.+.......+    .+...+... .....++.+.+|.+.+    ++.+...
T Consensus       282 ~~~~~~l~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~  348 (402)
T PRK11902        282 FGVLQAVSNLGYWVLAVTP--------KHLWTMALAIGIENLCGGMGTAAFV-ALLMALCNRSFSATQY----ALLSALA  348 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcHHHH----HHHHHHH
Confidence            6665555443332211110        011222222211    122222222 2223577777776654    4444445


Q ss_pred             HHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHH
Q psy17628        251 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV  288 (338)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (338)
                      .++..+++.+.+.+.+..||+..|.+.+.+++++.++.
T Consensus       349 ~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        349 SVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            56666566788899999999877777776666665444

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.61  E-value=1.9e-14  Score=122.40  Aligned_cols=166  Identities=17%  Similarity=0.075  Sum_probs=117.6

Q ss_pred             hcchHHHHHhhHH-HHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy17628        117 FSGINVVIFYLKR-ILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKL  195 (338)
Q Consensus       117 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (338)
                      +........+.|. +.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+++....     
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~-----   88 (366)
T TIGR00886        14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV-----   88 (366)
T ss_pred             HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh-----
Confidence            3345667778885 6677899999999999999999999999999999999999999999988888877766541     


Q ss_pred             ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q psy17628        196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER---------  266 (338)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  266 (338)
                            .+.+..++...+.+.+. ....+. ..+++|.+|+++|++++++......++..+++.+.+.+..         
T Consensus        89 ------~~~~~~~~~~~~~g~~~-~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  160 (366)
T TIGR00886        89 ------QSYSVLLLLRLFIGIAG-GSFASC-MPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP  160 (366)
T ss_pred             ------hhHHHHHHHHHHHHHhc-hhhHhH-HHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence                  01223333444444432 233333 3688999999999999999887777777777666655544         


Q ss_pred             -hcccceee-hhhhHHHHHHHHHHHhhccCC
Q psy17628        267 -AFGTGVAF-GTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       267 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  295 (338)
                       ..+|++.+ ...+.+..+..++.+...+|+
T Consensus       161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (366)
T TIGR00886       161 AHLAWGWAFVIVPAGILLLPALLIFFVGADT  191 (366)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence             23788887 333444444444444445554

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.61  E-value=6.5e-15  Score=130.09  Aligned_cols=139  Identities=14%  Similarity=0.038  Sum_probs=102.7

Q ss_pred             hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      .+....+.|.++++. |+++.+.+.......++.+++.++.|++.||+|||+.+..+..+.+++...+.....   .   
T Consensus       271 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~---~---  344 (485)
T TIGR00711       271 LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT---P---  344 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC---C---
Confidence            445667888888775 889999999999999999999999999999999999988887777766655442100   0   


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA  267 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (338)
                        ....+.......+.+.+.+....+.. ....+..|++.|+++.|+.+....+++.+++.+.+.+.++
T Consensus       345 --~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       345 --DTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11112233334444445444444444 4556778999999999999999999999999999887764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.61  E-value=1.4e-14  Score=125.08  Aligned_cols=154  Identities=18%  Similarity=0.183  Sum_probs=114.9

Q ss_pred             chHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-CCchHHHHHhHHHHHHHHHHHHHHHHhhcc
Q psy17628        119 GINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFYLLKLD  196 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (338)
                      .++....++|.++.+ .|++..+++...........++.+++|+++||+ |||+.++.+.++.+++.+++...       
T Consensus        24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~-------   96 (493)
T PRK15462         24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS-------   96 (493)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh-------
Confidence            366777888888765 599999999999999999999999999999999 99999999988888887655431       


Q ss_pred             cchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceee
Q psy17628        197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD--VKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAF  274 (338)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (338)
                          ........+...+...+.+....... ++++|.+|++  .|.++.++.+...++|+.++|.+.+.+.+..||+..|
T Consensus        97 ----~~~~~~~~l~l~li~iG~G~~~~~~~-alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F  171 (493)
T PRK15462         97 ----EIHPSFLYLSLAIIVCGYGLFKSNVS-CLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGF  171 (493)
T ss_pred             ----hcchhHHHHHHHHHHHhcccccccHH-HHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHH
Confidence                00011122222223233333323333 7889999986  6999999999999999999999999999989999888


Q ss_pred             hhhhHHHHHH
Q psy17628        275 GTFAVYCIIG  284 (338)
Q Consensus       275 ~~~~~~~~~~  284 (338)
                      .+.++..+++
T Consensus       172 ~iaaigm~l~  181 (493)
T PRK15462        172 GLAAVGMIAG  181 (493)
T ss_pred             HHHHHHHHHH
Confidence            7755443333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.60  E-value=3.1e-14  Score=121.66  Aligned_cols=173  Identities=13%  Similarity=0.023  Sum_probs=112.9

Q ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch
Q psy17628         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP  170 (338)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~  170 (338)
                      +++++++++..+...+..++...     .......+.|.+.++.|.+..+.+.......++.++..++.+++.||+|+|+
T Consensus       197 ~~~~i~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~  271 (382)
T PRK11128        197 AWKALLKEPTVWRFLLCVSLLQG-----SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD  271 (382)
T ss_pred             hHHHHHcChhHHHHHHHHHHHHH-----HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            46777877644332222222221     1334555667777788888888888888888899999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHH-
Q psy17628        171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL-  249 (338)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-  249 (338)
                      .+..+....+++.+.....            ++.+..++...+.+.+.+....... .+..+. +++.+++.+++.+.. 
T Consensus       272 ~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~  337 (382)
T PRK11128        272 LLLLSAICGVVRWGLMGST------------TALPWLIVIQILHCGTFTVCHLAAM-RYIAAR-PGSEVIRLQALYSALA  337 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHC-CHhhhHHHHHHHHHHH
Confidence            9888887777765544332            1223344445555555444333333 556665 555678888887644 


Q ss_pred             HHHHHHHHHHHHHHHHHhcccceeehhhhHHHHH
Q psy17628        250 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCII  283 (338)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (338)
                      ..++..++|.+.|.+.+..|+ ..++..+++.++
T Consensus       338 ~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~  370 (382)
T PRK11128        338 MGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP  370 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence            455668899999999998876 344444444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.60  E-value=4.2e-14  Score=119.45  Aligned_cols=156  Identities=21%  Similarity=0.221  Sum_probs=124.6

Q ss_pred             hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch-HHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy17628        120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP-LLLISDICMAICIGALGYYFYLLKLDE  197 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (338)
                      ......+.|.+.++. |.+..+.+.......++..++.++.+++.||+|||+ .+..+..+..++.+.....        
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------  262 (352)
T cd06174         191 YYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA--------  262 (352)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--------
Confidence            556677888888776 888889999999999999999999999999999999 8888888887777666543        


Q ss_pred             chhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhh
Q psy17628        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTF  277 (338)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (338)
                          .+.+.......+.+.+.+.... ....++.|..|++.|++.+|+.+....++..+++.+.+.+.+..+++..+.+.
T Consensus       263 ----~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~  337 (352)
T cd06174         263 ----PSLALLLVALLLLGFGLGFAFP-ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL  337 (352)
T ss_pred             ----ccHHHHHHHHHHHHHHHhccch-hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHH
Confidence                1123334445555555554444 44489999999999999999999999999999999999999888998888888


Q ss_pred             hHHHHHHHHHH
Q psy17628        278 AVYCIIGTFFV  288 (338)
Q Consensus       278 ~~~~~~~~~~~  288 (338)
                      +++.+++.++.
T Consensus       338 ~~~~~i~~i~~  348 (352)
T cd06174         338 AALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHh
Confidence            77777766544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.60  E-value=2.1e-14  Score=123.35  Aligned_cols=165  Identities=15%  Similarity=0.070  Sum_probs=122.2

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.....++.+.....          
T Consensus        24 ~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------   93 (394)
T PRK11652         24 QTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA----------   93 (394)
T ss_pred             HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH----------
Confidence            3344455788888889999999999999999999999999999999999999999888777776655442          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                        .+.+..++...+.+.+.+.. .+....+..|.++.+.|+.+.++.+....++..++|.+.+.+.+..+|+..+++.++
T Consensus        94 --~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~  170 (394)
T PRK11652         94 --HSLTVLIAASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLL  170 (394)
T ss_pred             --ccHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence              11223333334444333322 223335667888888999999998888888888999998888888899988888777


Q ss_pred             HHHHHHHHHHhhccCCCC
Q psy17628        280 YCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~  297 (338)
                      +.++..++..++.||+++
T Consensus       171 ~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        171 LGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHhCCccCc
Confidence            666655555556777543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.59  E-value=3.3e-14  Score=121.47  Aligned_cols=208  Identities=16%  Similarity=0.108  Sum_probs=115.3

Q ss_pred             echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (338)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~   77 (338)
                      +|..+++.++..      ||+.|++.   +++.++..++..+++||+++.   +++             ++.+.      
T Consensus       126 ~g~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~------  180 (377)
T PRK11102        126 IAPLLAPIIGGWLLVWFSWHAIFWVL---ALAAILAAALVFFFIPETLPK---ERR-------------QPFHL------  180 (377)
T ss_pred             HHHHHHHHHHHHHHHHcChHHHHHHH---HHHHHHHHHHHHHhCCccCcc---ccc-------------CCCCh------
Confidence            344455544433      99999998   777777666666778886420   000             00000      


Q ss_pred             HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHH
Q psy17628         78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMT  156 (338)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~  156 (338)
                              ++...++++.++++..+..     .+.....+.+......+.|.++.+ .|++..+.+.......++.+++.
T Consensus       181 --------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~  247 (377)
T PRK11102        181 --------RTTIRNFASLFRHKRVLGY-----MLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMT  247 (377)
T ss_pred             --------HHHHHHHHHHHcChHHHHH-----HHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence                    0011234556666532211     111112222244455566665555 58898899999999999999999


Q ss_pred             HHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc
Q psy17628        157 FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP  236 (338)
Q Consensus       157 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  236 (338)
                      ++.|++.||+|||+.+..+..+..+..+.+......        +...+...+...++..+.+....... .++.|..| 
T Consensus       248 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-  317 (377)
T PRK11102        248 IINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL--------DLGFWALVVGVAAFVGCVSMISSNAM-AVILDEFP-  317 (377)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHhhHHHH-HHHhcccc-
Confidence            999999999999999888776554433322221110        00112222222222222222222222 45667766 


Q ss_pred             hhhhhHHHHHHHHHH-HHHHHHHH
Q psy17628        237 DVKGLALGVICILGS-LIEFVVVK  259 (338)
Q Consensus       237 ~~r~~~~~~~~~~~~-~~~~~~~~  259 (338)
                      +.|+++.++.+.... ++..+++.
T Consensus       318 ~~~g~~~~~~~~~~~~~g~~~g~~  341 (377)
T PRK11102        318 HMAGTASSLAGTLRFGIGAIVGAL  341 (377)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHH
Confidence            788999998776644 34444443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.59  E-value=1.7e-14  Score=122.57  Aligned_cols=161  Identities=14%  Similarity=0.039  Sum_probs=122.2

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ........|.+..+.+.+..+.++..+...++..++.++.|+++||+|||+++..+..+..++.++........      
T Consensus        15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~------   88 (365)
T TIGR00900        15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG------   88 (365)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC------
Confidence            44555667778888888889999999999999999999999999999999999998887777766655542110      


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                       ..+.+..++...+.+.+.+...... .+++.|.+|+++|++++++.+....++..+++.+.+.+.+..+|+..+++.++
T Consensus        89 -~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~  166 (365)
T TIGR00900        89 -GLNIWQVYVLAGILAIAQAFFTPAY-QAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAV  166 (365)
T ss_pred             -CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence             0122334444555555544443333 37899999999999999999999999999999999999898999988877666


Q ss_pred             HHHHHHHHH
Q psy17628        280 YCIIGTFFV  288 (338)
Q Consensus       280 ~~~~~~~~~  288 (338)
                      ..++..++.
T Consensus       167 ~~~~~~~~~  175 (365)
T TIGR00900       167 GFAISALLI  175 (365)
T ss_pred             HHHHHHHHH
Confidence            555544333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.59  E-value=1.3e-13  Score=117.73  Aligned_cols=148  Identities=10%  Similarity=-0.056  Sum_probs=107.0

Q ss_pred             HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      ....+.|.+.++.|.+..+.+.......++.+++.++.|++.||+|+|+.+..+.....++...+...            
T Consensus       218 ~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~------------  285 (381)
T PRK03633        218 SLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQ------------  285 (381)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhh------------
Confidence            44567888888888888888888888899999999999999999999999888777666655433210            


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC  281 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (338)
                         ........+.+.+.. ...+...+.+.|..|++.++...+..+....+|..++|.+.+.+.+++++...|.+.+.+.
T Consensus       286 ---~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~  361 (381)
T PRK03633        286 ---AAMAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVS  361 (381)
T ss_pred             ---HHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence               011112222222222 2233343667888888888878888888888999999999999999999877777766666


Q ss_pred             HHHH
Q psy17628        282 IIGT  285 (338)
Q Consensus       282 ~~~~  285 (338)
                      ++..
T Consensus       362 l~~~  365 (381)
T PRK03633        362 FIYL  365 (381)
T ss_pred             HHHH
Confidence            5444

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.59  E-value=1.1e-14  Score=124.46  Aligned_cols=163  Identities=15%  Similarity=0.110  Sum_probs=127.8

Q ss_pred             HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      .......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++...+...           
T Consensus         8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----------   76 (377)
T PRK11102          8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----------   76 (377)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence            345567788888889999999999999999999999999999999999999999988888887766553           


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY  280 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (338)
                       .+.+...+...+.+.+.+...... .+++.|.+|++.|++++++.+....++..+++.+.+.+.+..+|+..+++.+.+
T Consensus        77 -~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  154 (377)
T PRK11102         77 -QTIDQLIYMRFLHGLAAAAASVVI-NALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALA  154 (377)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence             112233344444444444333333 378899999999999999999999999999999999998888998888887777


Q ss_pred             HHHHHHHHHhhccCCC
Q psy17628        281 CIIGTFFVYFVVPETK  296 (338)
Q Consensus       281 ~~~~~~~~~~~~~~~~  296 (338)
                      .++..++..+..||++
T Consensus       155 ~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        155 AILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHhCCccC
Confidence            7776666666677653

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.59  E-value=1.8e-14  Score=125.67  Aligned_cols=158  Identities=14%  Similarity=0.117  Sum_probs=119.0

Q ss_pred             HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      .....+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||++++.+.++..++.+++++..          
T Consensus        36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----------  105 (455)
T TIGR00892        36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS----------  105 (455)
T ss_pred             cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh----------
Confidence            3456678888888999999999999999888999999999999999999999998888887776665531          


Q ss_pred             hhhchHHHHHH-HHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628        201 DGLGLLPVASL-AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       201 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                        +.+..+... .+.+.+.+....+.. .++.+.+| +.|+++.++.+....++..+++.+.+.+.+..||++.|++.++
T Consensus       106 --~~~~l~~~~~~l~G~~~~~~~~~~~-~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~  181 (455)
T TIGR00892       106 --NVIELYLTAGFITGLGLAFNFQPSL-TMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGG  181 (455)
T ss_pred             --hHHHHHHHHHHHHHhcchhhhhHHH-HHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence              111222222 333444433333333 56678886 7899999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHhhc
Q psy17628        280 YCIIGTFFVYFVV  292 (338)
Q Consensus       280 ~~~~~~~~~~~~~  292 (338)
                      +.++..+..++..
T Consensus       182 ~~~~~~v~~~~~~  194 (455)
T TIGR00892       182 LLLHCCVCGALMR  194 (455)
T ss_pred             HHHHHHHHHHHhC
Confidence            7766654444433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.59  E-value=5.2e-14  Score=124.52  Aligned_cols=153  Identities=14%  Similarity=0.032  Sum_probs=107.6

Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHH
Q psy17628        137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII  216 (338)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (338)
                      +..+.++..+...++.+++.++.|+++||+|||+.+..+.++..++.++.+.....  ..    .......++...+.++
T Consensus        54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~--~~----~~~~~~~~~~r~l~G~  127 (502)
T TIGR00887        54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS--SP----KSVMATLCFWRFWLGV  127 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc--cc----chHHHHHHHHHHHHHH
Confidence            33455778888999999999999999999999999999888888877665543100  00    0012345555666666


Q ss_pred             hhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hccccee
Q psy17628        217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-----------------------AFGTGVA  273 (338)
Q Consensus       217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~  273 (338)
                      +.+....... .+++|.+|++.|++++++.+....+|..+++.+...+..                       ..+||..
T Consensus       128 ~~g~~~~~~~-~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~  206 (502)
T TIGR00887       128 GIGGDYPLSA-IITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRIL  206 (502)
T ss_pred             HHhhhhHHHH-HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHH
Confidence            6665555555 899999999999999999998888888777766554322                       1368877


Q ss_pred             ehhhhHHHHHHHHHHHhhccCCCC
Q psy17628        274 FGTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      +.+.++.+ +..++..+++||+.+
T Consensus       207 ~~~~~ip~-~i~~~~~~~lpESpr  229 (502)
T TIGR00887       207 IGFGAVPA-LLALYFRLTIPETPR  229 (502)
T ss_pred             HHHHHHHH-HHHHHHHHhCCCCHH
Confidence            75544433 444455567899844

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.58  E-value=4.8e-14  Score=121.05  Aligned_cols=132  Identities=14%  Similarity=0.097  Sum_probs=78.7

Q ss_pred             HHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        123 VIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       123 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      ...+.|.+.. +.|++..+.+......+++.+++.++.+++.||+|||+.+..+..+..++.+.+....           
T Consensus       222 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----------  290 (392)
T PRK10473        222 FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP-----------  290 (392)
T ss_pred             HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            3445565554 4588888888888889999999999999999999999999888877776665554431           


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccce
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGV  272 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (338)
                       ..........+...+.+.+...   ....+..|.+.|+   +..+....++..+++.+.+.+.+..|+..
T Consensus       291 -~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~  354 (392)
T PRK10473        291 -SHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA  354 (392)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence             1111222222222233322222   1223344544443   23333344555556666666666667643

>PRK03699 putative transporter; Provisional

Probab=99.58  E-value=5.7e-14  Score=120.53  Aligned_cols=155  Identities=10%  Similarity=0.027  Sum_probs=118.8

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.++..+.          
T Consensus        23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~----------   92 (394)
T PRK03699         23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS----------   92 (394)
T ss_pred             HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----------
Confidence            4456677888888889999999999999999999999999999999999999998888887777666543          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcccceeehhhh
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-AFGTGVAFGTFA  278 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  278 (338)
                        ++.+..++...+.+.+.+....... .++.|.+|++.|+.+++..+....+++.++|.+.+.+.+ ..+|++.+.+.+
T Consensus        93 --~~~~~~~~~~~l~G~~~g~~~~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~  169 (394)
T PRK03699         93 --HSLALFSIAMFVLGVVSGITMSIGT-FLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIG  169 (394)
T ss_pred             --chHHHHHHHHHHHHHhhHhhccchh-HHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence              1223334444555555554444333 678999999999999998888888888888888887765 468998888777


Q ss_pred             HHHHHHHHH
Q psy17628        279 VYCIIGTFF  287 (338)
Q Consensus       279 ~~~~~~~~~  287 (338)
                      ++.++..++
T Consensus       170 ~~~~~~~~~  178 (394)
T PRK03699        170 LVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHH
Confidence            666555433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.58  E-value=5e-14  Score=115.23  Aligned_cols=180  Identities=16%  Similarity=0.098  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628        104 ATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI  183 (338)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  183 (338)
                      +.+......+...++.++......+.+-++.|+|+.|.+++..+..+...+..++.|++.||+|.|+....+.++..+-+
T Consensus        14 ~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~   93 (417)
T COG2223          14 RNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPC   93 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Confidence            34444444454555556666666777778889999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        184 GALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDD  263 (338)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~  263 (338)
                      +..++...          ..+++.++...++.+..+..+.... .++++.||++++|+++|+.. .+++|..+...+.+.
T Consensus        94 ~~~~~a~~----------~~~~~~ll~~gll~G~~GasFav~m-~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~  161 (417)
T COG2223          94 LGLAFAVT----------YPSTWQLLVIGLLLGLAGASFAVGM-PNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL  161 (417)
T ss_pred             HHHHHHcc----------CCchHHHHHHHHHHhcccceehccc-ccccccCChhhhhHHHHHhc-cccccHHHHHHHHHH
Confidence            77776511          1111223333333323333333333 78999999999999999988 999999999999999


Q ss_pred             HHHhcc---cceeehhhhHHHHHHHHHHHhhccCC
Q psy17628        264 VERAFG---TGVAFGTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       264 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (338)
                      +....+   |+....++....++..+..++.+.+.
T Consensus       162 v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~  196 (417)
T COG2223         162 VAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV  196 (417)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            988888   88888888887777777777766543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.58  E-value=5.1e-14  Score=124.22  Aligned_cols=160  Identities=14%  Similarity=0.029  Sum_probs=110.2

Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHH
Q psy17628        135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY  214 (338)
Q Consensus       135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (338)
                      +.+..+.++..+...++..+++++.|+++||+|||++++.+..+..++.+..++...................++...+.
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~  130 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG  130 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence            66778889999999999999999999999999999999999888877766555421100000000001112334445555


Q ss_pred             HHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhcccceeehhhhHHHHHHHH
Q psy17628        215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE--------RAFGTGVAFGTFAVYCIIGTF  286 (338)
Q Consensus       215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  286 (338)
                      +++.+....... ++++|.+|+++|+.++++......+|..+++.+...+.        +..+|++.|++.++..++.. 
T Consensus       131 G~~~g~~~~~~~-~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-  208 (479)
T PRK10077        131 GIGVGLASMLSP-MYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-  208 (479)
T ss_pred             hhhHhHHhhHHH-HHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-
Confidence            555554444444 78999999999999999988888888777665443332        35689888887666665554 


Q ss_pred             HHHhhccCCC
Q psy17628        287 FVYFVVPETK  296 (338)
Q Consensus       287 ~~~~~~~~~~  296 (338)
                      +..+++||+.
T Consensus       209 ~~~~~l~~s~  218 (479)
T PRK10077        209 MLLYFVPETP  218 (479)
T ss_pred             HHHHcCCCCc
Confidence            3455678875

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.58  E-value=3.5e-15  Score=127.31  Aligned_cols=161  Identities=14%  Similarity=0.075  Sum_probs=122.6

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      .+....+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+......         
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~---------   89 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD---------   89 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH---------
Confidence            34556678888888999999999999999999999999999999999999999999888888877666541         


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                         +.+..++...+.+.+.+..+.... ..+.|.+| ++|+++.++......++..+++++.+.+.+..+|++.+.+.++
T Consensus        90 ---~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~  164 (377)
T TIGR00890        90 ---SLAALYLTYGLASAGVGIAYGIAL-NTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGI  164 (377)
T ss_pred             ---HHHHHHHHHHHHhHHHHHHHHhHH-HHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHH
Confidence               222333444444444443333333 45677777 5699999999888888888777777777788889998888888


Q ss_pred             HHHHHHHHHHhhccC
Q psy17628        280 YCIIGTFFVYFVVPE  294 (338)
Q Consensus       280 ~~~~~~~~~~~~~~~  294 (338)
                      +.++..+..+++.++
T Consensus       165 ~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       165 IFLLVIVLGAFLIGY  179 (377)
T ss_pred             HHHHHHHHHHHheec
Confidence            777776666665554

>PRK11043 putative transporter; Provisional

Probab=99.57  E-value=1.7e-13  Score=118.09  Aligned_cols=137  Identities=10%  Similarity=-0.058  Sum_probs=90.4

Q ss_pred             HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      .....+.|.+.++.|++..+.+.......++.+++.++.+++.||+++|+.........+++.+.+........      
T Consensus       220 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  293 (401)
T PRK11043        220 FAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSH------  293 (401)
T ss_pred             HHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence            34556778888888888888888777888888999999999999999998776665555554443322211110      


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER  266 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (338)
                       ...+..+....+.+.+.+....... ....|..| +.||+++|+.+..+..++..++.+.+.+.+
T Consensus       294 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        294 -PSLVPLLIPFCVMAAANGAIYPIVV-AQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence             0112222233333444433333322 45556666 579999999999988888888888887765

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.57  E-value=6.6e-14  Score=121.17  Aligned_cols=167  Identities=13%  Similarity=0.027  Sum_probs=120.2

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ........|.+.++.+.+..+.++..+...++..+++++.|+++||+|||+++..+..+.+++...+........     
T Consensus        33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-----  107 (417)
T PRK10489         33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPE-----  107 (417)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCC-----
Confidence            445667788888888778889999999999999999999999999999999998887777666555433211100     


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                        ...+..++...+.+.+.+....+.. .++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+|++.+.+.++
T Consensus       108 --~~~~~l~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~  184 (417)
T PRK10489        108 --PSLLAIYLLGLWDGFFGSLGVTALL-AATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAA  184 (417)
T ss_pred             --CcHHHHHHHHHHHHHHHHHHHHHHh-hhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence              1112333333344444443333333 6788999999999999999999999999999999998888888888776655


Q ss_pred             HHHHHHHHHHhhccCC
Q psy17628        280 YCIIGTFFVYFVVPET  295 (338)
Q Consensus       280 ~~~~~~~~~~~~~~~~  295 (338)
                      ..++.. +..+.+|++
T Consensus       185 ~~~~~~-~~~~~l~~~  199 (417)
T PRK10489        185 GTFITL-LPLLRLPAL  199 (417)
T ss_pred             HHHHHH-HHHHhCCCC
Confidence            554444 334446654

>PRK11043 putative transporter; Provisional

Probab=99.57  E-value=6.2e-14  Score=120.72  Aligned_cols=160  Identities=11%  Similarity=0.019  Sum_probs=117.4

Q ss_pred             HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      +......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.....           
T Consensus        23 ~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------   91 (401)
T PRK11043         23 DMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-----------   91 (401)
T ss_pred             HHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----------
Confidence            344444555677789999999999999999999999999999999999999998888777776655543           


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY  280 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (338)
                       .+.+..++...+.+.+.+... +....++.|.+|++.++...+..+....++..++|.+.+.+.+..+|+..+++.+.+
T Consensus        92 -~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~  169 (401)
T PRK11043         92 -ESAAQLLVLRFVQAVGVCSAA-VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAI  169 (401)
T ss_pred             -cCHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence             112233333334333333222 222257789999998888888888888889999999999998989999888877777


Q ss_pred             HHHHHHHHHhhccC
Q psy17628        281 CIIGTFFVYFVVPE  294 (338)
Q Consensus       281 ~~~~~~~~~~~~~~  294 (338)
                      .++..+..++ .+|
T Consensus       170 ~~~~~~~~~~-~~~  182 (401)
T PRK11043        170 TLLLILPTLR-LKP  182 (401)
T ss_pred             HHHHHHHHHH-cCC
Confidence            6666554444 444

>TIGR01272 gluP glucose/galactose transporter

Probab=99.57  E-value=7.8e-14  Score=115.00  Aligned_cols=141  Identities=11%  Similarity=-0.002  Sum_probs=100.4

Q ss_pred             hHHHHHhhHHHHHh---ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcc
Q psy17628        120 INVVIFYLKRILIA---TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD  196 (338)
Q Consensus       120 ~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (338)
                      -.....|.+.++.+   .|+++.+.+...+....+.++|.++.+++.||+|+|+.+..+..+..++.++....       
T Consensus       156 e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-------  228 (310)
T TIGR01272       156 EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-------  228 (310)
T ss_pred             HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-------
Confidence            44667788888865   38888999999999999999999999999999999998887776666655333221       


Q ss_pred             cchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehh
Q psy17628        197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGT  276 (338)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (338)
                            +.........+.+++.+..+.... +...+.+|++ .+++.++. ..+.+|+.+.|.+.|.+.|..|.+.++++
T Consensus       229 ------~~~~~~~~~~l~g~~~s~i~P~~~-s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v  299 (310)
T TIGR01272       229 ------HGYVAMWFVLALGLFNSIMFPTIF-SLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL  299 (310)
T ss_pred             ------CCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence                  111122333445555555544444 5666767754 45666664 56778999999999999998887666653

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.56  E-value=3.7e-14  Score=125.60  Aligned_cols=156  Identities=13%  Similarity=0.035  Sum_probs=119.5

Q ss_pred             HHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHH
Q psy17628        109 VGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGY  188 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~  188 (338)
                      ..+..+.............|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+.+.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  104 (496)
T PRK03893         25 AWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGF  104 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334556666778888888999999999999999999999999999999999999999998888887776665


Q ss_pred             HHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17628        189 YFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF  268 (338)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (338)
                      .            .+.+..++...+.+.+.+....... .++.|.+|++.|+.++++......++..+++.+.+.+.+..
T Consensus       105 ~------------~~~~~l~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  171 (496)
T PRK03893        105 A------------PGYWTLFIARLVIGMGMAGEYGSSA-TYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW  171 (496)
T ss_pred             H------------hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            3            1223334444444444443333333 68899999999999999999999999999999999998888


Q ss_pred             ccceeehhh
Q psy17628        269 GTGVAFGTF  277 (338)
Q Consensus       269 ~~~~~~~~~  277 (338)
                      +|++.+.+.
T Consensus       172 ~w~~~f~~~  180 (496)
T PRK03893        172 GWRALFFIG  180 (496)
T ss_pred             CHHHHHHHH
Confidence            998877653

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.56  E-value=5.9e-14  Score=120.44  Aligned_cols=162  Identities=14%  Similarity=0.115  Sum_probs=121.8

Q ss_pred             hHHHHHhhHHHH-HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      .+....+.+.++ ++.|.+..+.++..+...+...+..++.|+++||+|||+++..+..+.+++.+.+...         
T Consensus        26 ~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~---------   96 (400)
T PRK11646         26 FFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA---------   96 (400)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh---------
Confidence            445566666655 5669999999999999999999999999999999999999999988888887766543         


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                         ++.+..++...+.+.+.+.. .+...+++.|.+|++.|++++|+.+....++..++|.+.+.+. ..+|++.|++.+
T Consensus        97 ---~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~  171 (400)
T PRK11646         97 ---HEPWLLWLSCILSGLGGTLF-DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGA  171 (400)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence               12233344444444443322 2333367889999999999999999999999999999999887 678988888777


Q ss_pred             HHHHHHHHHHHhhccCC
Q psy17628        279 VYCIIGTFFVYFVVPET  295 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~  295 (338)
                      .+.++..++..+..||.
T Consensus       172 ~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        172 VLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            66666555545555653

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.56  E-value=6.7e-13  Score=114.88  Aligned_cols=183  Identities=17%  Similarity=0.135  Sum_probs=125.1

Q ss_pred             HHHHHHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc--hHHHHHhHHHHHHHHH
Q psy17628        109 VGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR--PLLLISDICMAICIGA  185 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~  185 (338)
                      +++..+...-+...+......+.+ +.|++..+......+..+.+++|++++|++.||+|.|  ++++++..+..+..+.
T Consensus       286 fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~  365 (477)
T PF11700_consen  286 FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLY  365 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            344444444456666677777766 4599999999999999999999999999999999999  7777766555333322


Q ss_pred             HHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        186 LGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE  265 (338)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (338)
                      -.+-......    ...+.+.+.+...+.+.+.+. ..+...++.+|+.|+++.+..+|+....+...+.++|.+.+.+.
T Consensus       366 g~~G~~~~~~----g~~~~~~f~~~a~~~G~~~G~-~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~  440 (477)
T PF11700_consen  366 GLFGFWPSFF----GLKSPWEFWVLAVLIGLFMGG-IQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT  440 (477)
T ss_pred             HHHHhhhccc----CcccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2210111100    012334445555555555543 34445589999999999999999999999999999999999999


Q ss_pred             Hhcc-cceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628        266 RAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       266 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      +.+| .|..+....++.+++.++. +.++..++
T Consensus       441 ~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g  472 (477)
T PF11700_consen  441 DATGSQRYGFLFLLVLFLIGLILL-FFVDVEKG  472 (477)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHHH-hhccchhh
Confidence            9887 5556665555555555444 43544433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00897 2A0118 polyol permease family

Probab=99.56  E-value=4.3e-14  Score=121.59  Aligned_cols=166  Identities=13%  Similarity=0.010  Sum_probs=111.3

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      .+....+.+.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+++......       
T Consensus        29 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~-------  101 (402)
T TIGR00897        29 DGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLG-------  101 (402)
T ss_pred             hhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence            4445567788888889999999999999999999999999999999999999999988887776544221000       


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhcccceeehhhh
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE-FVVVKTFDDVERAFGTGVAFGTFA  278 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                       ..+.+..++...+.+.+.+....... ..+.+.+|+++|++++|+.+....++. .+++.+.+.+.+..|++..++...
T Consensus       102 -~~~~~~l~~~~~i~G~g~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~  179 (402)
T TIGR00897       102 -HANYPLILLFYGIRGLGYPLFAYSFL-VWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSAL  179 (402)
T ss_pred             -CccHHHHHHHHHHHHcchHHHHhHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence             01122223333333333332222222 466788899999999999998888886 467777777777777655444433


Q ss_pred             HHHHHHHHHHHhhccC
Q psy17628        279 VYCIIGTFFVYFVVPE  294 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~  294 (338)
                      ....+..++..++.++
T Consensus       180 ~~~~~~~~~~~~~~~~  195 (402)
T TIGR00897       180 AFVLTGGVIALFSNKD  195 (402)
T ss_pred             HHHHHHHHHHHhccCC
Confidence            3333333333343443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.56  E-value=1.8e-14  Score=126.37  Aligned_cols=166  Identities=13%  Similarity=-0.099  Sum_probs=122.3

Q ss_pred             HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      ..+....|.+.++.|.+..+.++..+.+.++..++.++.|+++||+|||+++..+.++.++..+.++......       
T Consensus        46 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-------  118 (467)
T PRK09556         46 KNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG-------  118 (467)
T ss_pred             cChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc-------
Confidence            3455667888899999999999999999999999999999999999999999988888777776655431111       


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccceeehhh
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF---GTGVAFGTF  277 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  277 (338)
                      ..+.+..++...+.+.+.+.+..... .+++|.+|+++||+++|+......+|..+++.+.....+..   +|+..|.+.
T Consensus       119 ~~~~~~l~~~r~l~G~~~~~~~~~~~-~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~  197 (467)
T PRK09556        119 SVSLGLMIALWALSGFFQSTGGPCSY-STITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFP  197 (467)
T ss_pred             cchHHHHHHHHHHHHHHHhccchHHH-HHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHH
Confidence            11233444555556665555554444 78999999999999999999888888888888776655543   466666666


Q ss_pred             hHHHHHHHHHHHhhccC
Q psy17628        278 AVYCIIGTFFVYFVVPE  294 (338)
Q Consensus       278 ~~~~~~~~~~~~~~~~~  294 (338)
                      +++.++..++.+++.++
T Consensus       198 g~~~~~~~i~~~~~~~~  214 (467)
T PRK09556        198 SIIALIIGFIGLRYGSD  214 (467)
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            66666655555555544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.56  E-value=2.2e-13  Score=116.95  Aligned_cols=134  Identities=8%  Similarity=-0.016  Sum_probs=88.4

Q ss_pred             HHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhh-hcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD-KAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      ...+.|.+.++.+.++.+.+.......++...+....+++.| |++.++.+..+..+.+++..++...            
T Consensus       227 ~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~------------  294 (400)
T PRK11646        227 VMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV------------  294 (400)
T ss_pred             HHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh------------
Confidence            345778888887556677777777777666665555555555 5666666666666666655544332            


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG  269 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (338)
                      +..+.......+++.+.+....... +++.|..|++.||+++|+.+....++..++|.+.+.+.+..+
T Consensus       295 ~~~~~~~~~~~l~~~g~~~~~p~~~-~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        295 SNLQQLFTLICLFYIGSIIAEPARE-TLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHccHH-HHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence            0112222223333333333333333 678899999999999999999999999999999999988753

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.55  E-value=1.9e-13  Score=116.73  Aligned_cols=184  Identities=15%  Similarity=0.006  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHH
Q psy17628        103 KATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI  181 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  181 (338)
                      ++.+....+.+...+...+......+.+.+ +.|++..|.++..++..+...++.++.|++.||+|.|+++.++.++..+
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            445555555566666556666666666655 6899999999999999999999999999999999999999999888887


Q ss_pred             HHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17628        182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF  261 (338)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~  261 (338)
                      ..+..++.....       .++.+..++...+.+.+ +..+.+.. ..+++.+|+++||+++|+....+++|..+.+.+.
T Consensus       113 ~~~~~~~a~~~~-------~~s~~~lli~r~l~Gig-g~~f~~~~-~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~  183 (462)
T PRK15034        113 PCVWLGIAVQNP-------NTPFGIFIVIALLCGFA-GANFASSM-GNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA  183 (462)
T ss_pred             HHHHHHHHHccc-------CCCHHHHHHHHHHHHHH-HHhHHHHH-HHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            777665421000       01223344444445443 33444433 6889999999999999999777777776666655


Q ss_pred             HHHH-----Hhccc-------------ceeehhhhHHHHHHHHHHHhhccCC
Q psy17628        262 DDVE-----RAFGT-------------GVAFGTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       262 ~~~~-----~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~  295 (338)
                      +.+.     +..|+             +...+++..+.++..++.++++++.
T Consensus       184 p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        184 PLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             HHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            5433     33333             3334455566666665666655543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.55  E-value=9.7e-14  Score=121.47  Aligned_cols=164  Identities=11%  Similarity=0.063  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHH
Q psy17628        103 KATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMA  180 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~  180 (338)
                      +..+..+.......+ +++....+++.+++ +.|++..+..+....+.....+..+++|+++|| +|||++++.+.++..
T Consensus        14 ~~~~~~~~~~~~er~-~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~   92 (489)
T PRK10207         14 RPFFMIFFVELWERF-GYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA   92 (489)
T ss_pred             hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence            334444444433333 36666666666665 469888888888888888888888899999999 999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch--hhhhHHHHHHHHHHHHHHHHH
Q psy17628        181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD--VKGLALGVICILGSLIEFVVV  258 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~  258 (338)
                      ++.+.+++..           +.....++...+.+.+.+....... +++.|.+|++  .|+.++++.+...++|..++|
T Consensus        93 ~g~~~~~~~~-----------~~~~ll~~~~~l~~ig~g~~~~~~~-~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~  160 (489)
T PRK10207         93 IGYFMTGMSL-----------LKPDLIFIALGTIAVGNGLFKANPA-SLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL  160 (489)
T ss_pred             HHHHHHHHhc-----------cchhHHHHHHHHHHhccccccCCHH-HHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence            9888776541           1111222334444444444444444 7899999887  457789999999999999999


Q ss_pred             HHHHHHHHhcccceeehhhhH
Q psy17628        259 KTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~  279 (338)
                      .+.+.+.+..||++.|++.++
T Consensus       161 ~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        161 SLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             HHHHHHHHhhChHHHHHHHHH
Confidence            999999999999988877543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.54  E-value=9.4e-13  Score=112.79  Aligned_cols=153  Identities=12%  Similarity=0.029  Sum_probs=100.9

Q ss_pred             HHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        123 VIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       123 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      ..+..|.+.++ .|.++.+.+.......++.++++++.+++.||.++|+.+..+.. .++....+...            
T Consensus       224 ~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~------------  290 (393)
T PRK11195        224 LRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ------------  290 (393)
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH------------
Confidence            33444555544 48899999999999999999999999999999999887776643 33322222211            


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccCCchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV-KGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY  280 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (338)
                      .+.+.......+.+.+.+....+.. +.+.+..|++. +|++.++.+...+++..++..+.+. .+..|.+..+.+.+..
T Consensus       291 ~~~~~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  368 (393)
T PRK11195        291 HSLLPAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFG  368 (393)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHH
Confidence            1122233333344444444444444 55667666654 7999999999999999888888774 4677877777665555


Q ss_pred             HHHHHHHHHh
Q psy17628        281 CIIGTFFVYF  290 (338)
Q Consensus       281 ~~~~~~~~~~  290 (338)
                      .++...+.+.
T Consensus       369 ~~~~~~~~~~  378 (393)
T PRK11195        369 LLVALAMALL  378 (393)
T ss_pred             HHHHHHHHHH
Confidence            5555544443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.54  E-value=2e-13  Score=120.34  Aligned_cols=179  Identities=13%  Similarity=0.033  Sum_probs=112.4

Q ss_pred             HHHhhhcchHHHHHhhHHHHHhccCCCCCc-chh-----hHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHH
Q psy17628        112 LCFLSFSGINVVIFYLKRILIATNSKIISP-NYG-----QNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA  185 (338)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~-----~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  185 (338)
                      ..+........+.+..|.+.++.+.+.++. ...     .+...++..+|+++.|+++||+|||+++..+.++++++.++
T Consensus        24 g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~  103 (490)
T PRK10642         24 GNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFC  103 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            333333334455556666655554332221 111     35556788899999999999999999999999999999888


Q ss_pred             HHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        186 LGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE  265 (338)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (338)
                      +++........    .......++...+.+++.+..+.... .+++|.+|++.||...++......+|..+++.+...+.
T Consensus       104 ~a~~~~~~~~g----~~a~~~l~~~R~l~G~g~g~~~~~~~-~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~  178 (490)
T PRK10642        104 IGLIPSYATIG----IWAPILLLLCKMAQGFSVGGEYTGAS-IFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIS  178 (490)
T ss_pred             HHhcccHHHHH----HHHHHHHHHHHHHHHhHhHhhHHHHH-HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87752111000    00001234455555666555544444 79999999999999999887776666666654443322


Q ss_pred             --------HhcccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        266 --------RAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       266 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                              ..+||++.|++.+.+.++ .++....+||+.
T Consensus       179 ~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp  216 (490)
T PRK10642        179 TIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETP  216 (490)
T ss_pred             HhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCCh
Confidence                    357899988875544443 333444567764

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.54  E-value=2.8e-14  Score=125.80  Aligned_cols=163  Identities=14%  Similarity=0.085  Sum_probs=116.8

Q ss_pred             HHHhhHHHHHhccCC--------CCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhh
Q psy17628        123 VIFYLKRILIATNSK--------IISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLK  194 (338)
Q Consensus       123 ~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~  194 (338)
                      .....+....+.+++        ..+.++..+...++..++.++.|+++||+|||++++.+.++..++.++......   
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~---  123 (481)
T TIGR00879        47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF---  123 (481)
T ss_pred             hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc---
Confidence            334445444554444        788899999999999999999999999999999999998888887776644310   


Q ss_pred             cccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHhcccc
Q psy17628        195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF---DDVERAFGTG  271 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  271 (338)
                            ....+..++...+.+.+.+...... ..++.|.+|+++|++++++.+....+|..+++.+.   ....+..+|+
T Consensus       124 ------~~~~~~~~~~r~l~G~~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~  196 (481)
T TIGR00879       124 ------ALSVEMLIVGRVLLGIGVGIASALV-PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWR  196 (481)
T ss_pred             ------ccchHHHHHHHHHHHhhhhHHHhHH-HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHH
Confidence                  1111244455555555555444333 47899999999999999999999999999988887   5444667888


Q ss_pred             eeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        272 VAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      +.|++.+...++. ++..+++||+.
T Consensus       197 ~~f~~~~~~~~~~-~~~~~~l~~~~  220 (481)
T TIGR00879       197 IPLGLQLIPAGLL-FLGLFFLPESP  220 (481)
T ss_pred             HHHHHHHHHHHHH-HHHHhcCCCCh
Confidence            8888754444433 34455577763

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.54  E-value=1.3e-13  Score=120.58  Aligned_cols=155  Identities=13%  Similarity=0.044  Sum_probs=119.5

Q ss_pred             cchHHHHHhhHHHHHh---ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHHHHHHHHHHHHHHh
Q psy17628        118 SGINVVIFYLKRILIA---TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLL  193 (338)
Q Consensus       118 ~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~  193 (338)
                      .+++....++|.++++   .|++..+.+.......++..++.+++|+++|| +|||+++..+.++.+++.++++..    
T Consensus        24 ~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~----   99 (475)
T TIGR00924        24 FSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS----   99 (475)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc----
Confidence            3466778888888765   68899999999999999999999999999999 899999999999888887766653    


Q ss_pred             hcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628        194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV---KGLALGVICILGSLIEFVVVKTFDDVERAFGT  270 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (338)
                              ...+...+...+.+.+.+....... ++++|.+|++.   |+++.++.+...++|..+++.+.+.+.+..+|
T Consensus       100 --------~~~~~~~~~~~l~g~g~g~~~~~~~-~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~  170 (475)
T TIGR00924       100 --------IYPDLIFYGLGTIAVGSGLFKANPS-SMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGY  170 (475)
T ss_pred             --------ccHhHHHHHHHHHHhccccccCCHH-HHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence                    1112233333444444443333333 68889998754   88899999999999999999999999998899


Q ss_pred             ceeehhhhHHHHHHH
Q psy17628        271 GVAFGTFAVYCIIGT  285 (338)
Q Consensus       271 ~~~~~~~~~~~~~~~  285 (338)
                      +..|.+.++..+++.
T Consensus       171 ~~~f~~~~~~~~~~~  185 (475)
T TIGR00924       171 HVGFNLAAVGMVIGL  185 (475)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888877665444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10054 putative transporter; Provisional

Probab=99.54  E-value=8.6e-14  Score=119.27  Aligned_cols=138  Identities=14%  Similarity=0.111  Sum_probs=89.9

Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHH
Q psy17628        135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY  214 (338)
Q Consensus       135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (338)
                      +.+....+.......+......+..|++.||.++|+.+..+..+..++...+...           .++.+...+...++
T Consensus       240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~  308 (395)
T PRK10054        240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-----------GNSLLLWGMSAAVF  308 (395)
T ss_pred             chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-----------chHHHHHHHHHHHH
Confidence            4444455566666666666777888999999999999888877666665544332           01112223333344


Q ss_pred             HHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHH
Q psy17628        215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT  285 (338)
Q Consensus       215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (338)
                      +.+... ..+...+.+.+..|++.|+++.+..+ ...+|..++|.+.+.+.|+.|....+.+.+.+..+..
T Consensus       309 ~~g~~~-~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~  377 (395)
T PRK10054        309 TVGEII-YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAW  377 (395)
T ss_pred             HHHHHH-HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHH
Confidence            433332 22333367788889999999988654 6778999999999999999887666655444443333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.54  E-value=1.3e-13  Score=118.63  Aligned_cols=160  Identities=8%  Similarity=-0.196  Sum_probs=113.7

Q ss_pred             hcchHHHHHhhHHHH-HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy17628        117 FSGINVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKL  195 (338)
Q Consensus       117 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (338)
                      ..+.......+|.++ ++.|.+..+.++..+...++..+++++.|+++||+|||+++..+.++.+++.+.+.......+.
T Consensus        28 ~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~  107 (399)
T PRK05122         28 YLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAW  107 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            333556666777755 5669999999999999999999999999999999999999999988877766554443211100


Q ss_pred             ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628        196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFG  275 (338)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (338)
                      .    ....+..++...+.+.+.+....... .++.|.+|+++|++++++......++..+++.+.+.+.+..||+..+.
T Consensus       108 ~----~~~~~~l~~~r~l~G~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~  182 (399)
T PRK05122        108 P----VLSLLLLLLGRLLLGIGESLAGTGSI-LWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGL  182 (399)
T ss_pred             c----hhHHHHHHHHHHHHHhhHHhhcchHH-HHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHH
Confidence            0    00112334444455555444333333 567899999999999999888888888889998888888889876655


Q ss_pred             hhhHHH
Q psy17628        276 TFAVYC  281 (338)
Q Consensus       276 ~~~~~~  281 (338)
                      +..++.
T Consensus       183 ~~~~~~  188 (399)
T PRK05122        183 LIMLLA  188 (399)
T ss_pred             HHHHHH
Confidence            544433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.53  E-value=4.6e-13  Score=112.78  Aligned_cols=175  Identities=11%  Similarity=-0.015  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCC-cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628        105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIIS-PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI  183 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  183 (338)
                      .+++++..++..+  -.......|.+.++.|++..+ .+.+......+..+..+++|+++||+|-|+++..+.+..++..
T Consensus        29 ~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t  106 (511)
T TIGR00806        29 VLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW  106 (511)
T ss_pred             HHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            4444444444333  334556677788888999999 9999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        184 GALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDD  263 (338)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~  263 (338)
                      ++.++.            .....+.+...+++.+-+..+ ... .++...+|++.|+++.|+.+....+|.++++++.+.
T Consensus       107 ~L~~fa------------~Sl~~L~i~R~llGvaEA~~~-A~~-syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql  172 (511)
T TIGR00806       107 LLLLLG------------TSVWHMQLMEVFYSVTMAARI-AYS-SYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL  172 (511)
T ss_pred             HHHHHH------------HHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887764            123455566667777666666 444 799999999999999999999999999999999998


Q ss_pred             HHHhcccceeehh--hhHHHHHHHHHHHhhccCCC
Q psy17628        264 VERAFGTGVAFGT--FAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       264 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  296 (338)
                       +..+||+....+  +...+...+++..+++|..+
T Consensus       173 -l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~  206 (511)
T TIGR00806       173 -LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPK  206 (511)
T ss_pred             -HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence             667888774432  33334444445556677443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.52  E-value=1.7e-13  Score=116.12  Aligned_cols=130  Identities=10%  Similarity=0.075  Sum_probs=85.1

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHH-HHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVG-FIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      .+....+.|.+.++.|++..+.+......+ +..+++.+++|+++||+|||+.+..+.++.++....+.+........ .
T Consensus       225 ~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~  303 (356)
T TIGR00901       225 DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHD-G  303 (356)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc-c
Confidence            455667788888888888888877776655 57789999999999999999998888777666554433321000000 0


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHH
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGS  251 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  251 (338)
                      ......+.......+.+++.+....... +++.|.+|++.||+.+|+.+...+
T Consensus       304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       304 ITFPHLLMLFLTITLEAVTGGLGTVAFV-AFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhcCCCccHHHHHHHHHHHh
Confidence            0001112233333344444444444444 899999999999999999876653

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.52  E-value=1.4e-13  Score=118.02  Aligned_cols=148  Identities=11%  Similarity=-0.032  Sum_probs=117.0

Q ss_pred             HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      .......|.+.++.|.|..+.++..+...++..+++++.|+++||+|||+++..+..+.+++.+..++.           
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a-----------   94 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY-----------   94 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-----------
Confidence            456677889999999999999999999999999999999999999999999999999999999888764           


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccceeehhhhH
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF-GTGVAFGTFAV  279 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  279 (338)
                       ++.+..++...+.+.+.+....... .++.+.+| ++|+.++++.......|..+++.+.+.+.++. +|+..+.+.+.
T Consensus        95 -~~~~~ll~~r~l~Gig~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~  171 (393)
T PRK09705         95 -PQSALLLSSALLGGVGIGIIQAVMP-SVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWAL  171 (393)
T ss_pred             -cchHHHHHHHHHHHhHHHHHhhhhh-HHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence             1223344555555666554444444 67788887 67999999998888888888888888877765 78776655544


Q ss_pred             HHH
Q psy17628        280 YCI  282 (338)
Q Consensus       280 ~~~  282 (338)
                      ..+
T Consensus       172 ~~~  174 (393)
T PRK09705        172 PAV  174 (393)
T ss_pred             HHH
Confidence            433

>PRK12382 putative transporter; Provisional

Probab=99.51  E-value=2.1e-13  Score=117.11  Aligned_cols=151  Identities=11%  Similarity=-0.133  Sum_probs=106.0

Q ss_pred             hHHHHHhhHHHH-HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ........|.++ ++.|.+..+.++..+...++..+++++.|+++||+|||+++..+.+...++.+............  
T Consensus        31 ~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~--  108 (392)
T PRK12382         31 VGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSA--  108 (392)
T ss_pred             HHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccch--
Confidence            445556666654 56799999999999999999999999999999999999999988777666544322211100000  


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFG  275 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (338)
                        ..+.+..++...+.+.+.+....... +++.|.+|+++|++++++.......+..+++.+.+.+.+..||+..+.
T Consensus       109 --~~~~~~l~~~r~l~G~~~~~~~~~~~-~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  182 (392)
T PRK12382        109 --PFKFALLVVGRLILGFGESQLLTGAL-TWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALAL  182 (392)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence              01223334444455544443333232 577899999999999999888888888899999888888888865443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.51  E-value=3.1e-14  Score=120.36  Aligned_cols=212  Identities=17%  Similarity=0.249  Sum_probs=127.6

Q ss_pred             echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (338)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~   77 (338)
                      +|.++++.++..      ||+.|++.   +++.++..++...+++++|+....+.+.++.                    
T Consensus       132 ~g~~~g~~l~~~l~~~~~~~~~~~~~---~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--------------------  188 (352)
T PF07690_consen  132 LGSILGPLLGGFLISYFGWRWAFLIS---AILSLIAAILFILFLPEPPPPRERESPKESE--------------------  188 (352)
T ss_dssp             HHHHHHHHHHHHCCCHCHHCCHHHHH---HHHHHHHHHHHHCCC---STTTT--SSTTTT--------------------
T ss_pred             hhhhcccchhhhhhhccccccccccc---cchhhhhhhhHhhhhhhcccccccccccccc--------------------
Confidence            455555555544      99999999   7777776555556666655311111100000                    


Q ss_pred             HHHHHHHhhhhhh-HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHH-HHhccCC-CCCcchhhHHHHHHHHH
Q psy17628         78 LQKELDIQAQKKK-SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIATNSK-IISPNYGQNIVGFIQVI  154 (338)
Q Consensus        78 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~  154 (338)
                           ++.+++.. .++..++++..+ ..+.......    ........+.|.+ .+..|.+ ..+.+....+..+...+
T Consensus       189 -----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  258 (352)
T PF07690_consen  189 -----SKKPKPLKPGFKSLFKNPVLW-ILLIAFFLFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGII  258 (352)
T ss_dssp             -------HHHCCCH-CTHHHHHHCCH-HHHHHHHHHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHH
T ss_pred             -----cccccccccccccccccchhh-hhhhhhhHHH----HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence                 00011111 244555555333 1222222221    1244577788887 4555888 67777888889999999


Q ss_pred             HHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC
Q psy17628        155 MTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF  234 (338)
Q Consensus       155 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  234 (338)
                      +.++.|+++||+++|+..........+..+.+......         .+....+....+.+.+.+....... .++.|..
T Consensus       259 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~  328 (352)
T PF07690_consen  259 GSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS---------SSPVWLIIALFLIGFGFGIVFPILF-SLIQELV  328 (352)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH---------CHHHHHHHHHHHHHHHHHHHCHHHH-HHHHCCC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC
Confidence            99999999999999888777766666655544432111         1122333344445555544444444 7899999


Q ss_pred             CchhhhhHHHHHHHHHHHHHHHHH
Q psy17628        235 TPDVKGLALGVICILGSLIEFVVV  258 (338)
Q Consensus       235 p~~~r~~~~~~~~~~~~~~~~~~~  258 (338)
                      |++.||++.|+.+....+++.++|
T Consensus       329 ~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  329 PPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999998876

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.51  E-value=2.4e-13  Score=114.88  Aligned_cols=157  Identities=14%  Similarity=0.105  Sum_probs=124.7

Q ss_pred             chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      .........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.....         
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~---------   84 (352)
T cd06174          14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA---------   84 (352)
T ss_pred             hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh---------
Confidence            35566777888888889999999999999999999999999999999999999999988888887766553         


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                         .+.+...+...+.+.+.+....... .++.|.+|+++|++.+++.+....++..+++.+.+.+.+..+|+..+.+.+
T Consensus        85 ---~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
T cd06174          85 ---SSLWLLLVGRFLLGLGGGALYPAAA-ALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA  160 (352)
T ss_pred             ---ccHHHHHHHHHHHHcccccccHhHH-HHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence               1223344444555555444444444 789999999999999999999999999999999999998888888877766


Q ss_pred             HHHHHHHHHH
Q psy17628        279 VYCIIGTFFV  288 (338)
Q Consensus       279 ~~~~~~~~~~  288 (338)
                      .+.++..+..
T Consensus       161 ~~~~~~~~~~  170 (352)
T cd06174         161 ILGLLLALLL  170 (352)
T ss_pred             HHHHHHHHHH
Confidence            6655554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00896 CynX cyanate transporter

Probab=99.51  E-value=6.1e-13  Score=112.62  Aligned_cols=137  Identities=12%  Similarity=0.046  Sum_probs=96.4

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-CCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ++....+.|.++++.|++..+.+...+...++.+++.++.|++.||+ +||+.+..+..+.+++.+.+.+..        
T Consensus       213 ~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--------  284 (355)
T TIGR00896       213 YYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP--------  284 (355)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh--------
Confidence            44566788999988899998999999999999999999999999999 566666666666666655444321        


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeec-cCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGE-LFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT  270 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (338)
                         .. .. .....+.+.+.+....... +.+.+ ..+++.++...++.+.++.++..++|.+.+.+.++.|.
T Consensus       285 ---~~-~~-~~~~~l~g~~~g~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       285 ---MH-GL-WAWALVLGLGQGGAFPLAL-TLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             ---hh-HH-HHHHHHHHHhhhhHhHHHH-HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               01 11 1122334444433332222 33433 34566778999999999999999999999999998774

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.50  E-value=3e-13  Score=117.50  Aligned_cols=175  Identities=14%  Similarity=0.058  Sum_probs=108.4

Q ss_pred             hhhcchHHHHHhhHHHHHhcc---CCCCCc---chhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHH
Q psy17628        115 LSFSGINVVIFYLKRILIATN---SKIISP---NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGY  188 (338)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~g---~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~  188 (338)
                      ........+....|.+.++.+   .+..+.   +.......++..++++++|+++||+|||+.+..+..+.+++.+++++
T Consensus        33 ~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~  112 (432)
T PRK10406         33 VEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIAC  112 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhh
Confidence            334445556666676766654   233322   23344455666699999999999999999999999999888887766


Q ss_pred             HHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy17628        189 YFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE---  265 (338)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---  265 (338)
                      ........    .......++...+.+.+.+..+.... ++++|.+|+++|+.+.++.......|..+++.+...+.   
T Consensus       113 ~~~~~~~~----~~~~~~l~~~R~l~G~g~g~~~~~~~-~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~  187 (432)
T PRK10406        113 LPGYETIG----TWAPALLLLARLFQGLSVGGEYGTSA-TYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTL  187 (432)
T ss_pred             cCCchhHH----HHHHHHHHHHHHHHHhhhhhhHhhHH-HHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            41110000    00112344455556655554444444 89999999999999988876666666555554433222   


Q ss_pred             -----HhcccceeehhhhHHHHHHHHHHHhhccCC
Q psy17628        266 -----RAFGTGVAFGTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       266 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (338)
                           +.+|||..|++.++..++.. +.....||+
T Consensus       188 ~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~  221 (432)
T PRK10406        188 EDAELREWGWRIPFALGAVLAVVAL-WLRRQLDET  221 (432)
T ss_pred             CHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence                 25789998877665554432 333335554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.49  E-value=6.5e-13  Score=129.29  Aligned_cols=130  Identities=8%  Similarity=-0.057  Sum_probs=93.9

Q ss_pred             HHHHhhHHHHHh-ccCCCC-CcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        122 VVIFYLKRILIA-TNSKII-SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       122 ~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ....+.|.++.+ .|++.. ..+++.+...++.+++.++.|+++||+++++.+.++.++.+++.+++...          
T Consensus       250 ~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----------  319 (1146)
T PRK08633        250 LAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA----------  319 (1146)
T ss_pred             HHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh----------
Confidence            445566666655 588887 88899999999999999999999999999988888777776666555443          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDV  264 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  264 (338)
                        .+.+..++...+++++.+....+.. +++.+..|++.||+++|+.+.+..++..+++.+.+.+
T Consensus       320 --~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l  381 (1146)
T PRK08633        320 --PSLASVLVLFFLFGFSAGLFIVPLN-ALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF  381 (1146)
T ss_pred             --hhHHHHHHHHHHHHHHHHHhhHHHH-HHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence              1122333444444444444444443 7888999999999999999999988887666555444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.49  E-value=2.6e-12  Score=109.13  Aligned_cols=188  Identities=14%  Similarity=0.085  Sum_probs=127.5

Q ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhcc-CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc
Q psy17628         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATN-SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (338)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr  169 (338)
                      +..+++|+|+.....+..++.     .........|.+.++++.| .+....+...++..+..++.-...+++..|+|.|
T Consensus       199 ~~~~llk~~~~~~Fll~~~l~-----~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~  273 (400)
T PF03825_consen  199 DALKLLKNPRFLVFLLAAFLI-----GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK  273 (400)
T ss_pred             HHHHHhcCccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            345688887533222222222     2224566778888899987 6777777777888899999999999999999999


Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHH----HHHHHhhcccccccceeeeeccCCchhhhhHHHH
Q psy17628        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL----AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGV  245 (338)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  245 (338)
                      +++.++.+..++-..+.+..           .++.+......    .+.+..++..+.... .++.+..|++.|++++++
T Consensus       274 ~ll~~a~~~~~vR~~l~a~~-----------~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~-~yi~~~~p~~~~at~Q~l  341 (400)
T PF03825_consen  274 WLLLLALVAYAVRWLLYAYF-----------SDPWPFIVALQLLGQLLHGLTFGLFHAASV-RYIDRIAPPELRATAQGL  341 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-----------cCCcHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHhCCccchHHHHHH
Confidence            99999988888777665543           11222222222    245655655555555 789999999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHhcccceee------hhhhHHHHHHHHHHHhhccCC
Q psy17628        246 ICIL-GSLIEFVVVKTFDDVERAFGTGVAF------GTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       246 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  295 (338)
                      .+.. ..+|..++..+.|++.+.+|.+..+      .+.+++.++..++.+++.||+
T Consensus       342 ~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  342 YSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            7765 6789999999999999988765433      333333444444444444443

>TIGR00898 2A0119 cation transport protein

Probab=99.48  E-value=1.3e-13  Score=122.36  Aligned_cols=155  Identities=12%  Similarity=0.012  Sum_probs=114.2

Q ss_pred             HhhHHHHHhccCC---CCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        125 FYLKRILIATNSK---IISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       125 ~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      .+.+.+.++.+.+   ..+.++..+...++.+++.++.|+++||+|||++++.+.++..++.++..+.            
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------------  177 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------------  177 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc------------
Confidence            3456677777887   7788999999999999999999999999999999999988888877766553            


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC  281 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (338)
                      .+.+..++...+.+++.+.. .+....++.|.+|++.|+.+.++......+|..+++.+...+.+   |++.+++.++..
T Consensus       178 ~~~~~~~~~r~l~G~~~~~~-~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~  253 (505)
T TIGR00898       178 PNYTVFLVFRLLVGMGIGGI-WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPT  253 (505)
T ss_pred             ccHHHHHHHHHHHHhhccch-HHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHH
Confidence            12233444445555444433 44444899999999999999999887777787777766544332   888887777666


Q ss_pred             HHHHHHHHhhccCCC
Q psy17628        282 IIGTFFVYFVVPETK  296 (338)
Q Consensus       282 ~~~~~~~~~~~~~~~  296 (338)
                      ++..+.. +++||+.
T Consensus       254 ~~~~~~~-~~~~esp  267 (505)
T TIGR00898       254 FLFFLLS-WFVPESP  267 (505)
T ss_pred             HHHHHHH-HhcCCCh
Confidence            6555444 5678864

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.48  E-value=7.7e-13  Score=113.68  Aligned_cols=159  Identities=7%  Similarity=-0.096  Sum_probs=119.3

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ........|.+.++.|.+..+.++..+...++..+++++.|++.||+|||+.+..+..+.+++.+++.....        
T Consensus        19 ~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--------   90 (410)
T TIGR00885        19 NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--------   90 (410)
T ss_pred             HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            345557778888888999999999999999999999999999999999999999999998888766533210        


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-------------  266 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  266 (338)
                       ..+.+..+....+.+.+.+....... .++.+..|++.|++.+++.+....+|..+++.+.+.+..             
T Consensus        91 -~~~~~~~l~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~  168 (410)
T TIGR00885        91 -IMNYTLFLVGLFILTAGLGFLETAAN-PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDK  168 (410)
T ss_pred             -hccHHHHHHHHHHHHhhHHHHHhhhh-HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhh
Confidence             01223344445555555555555444 677888899999999999999999999999888776642             


Q ss_pred             -------------hcccceeehhhhHHHHHHHHHH
Q psy17628        267 -------------AFGTGVAFGTFAVYCIIGTFFV  288 (338)
Q Consensus       267 -------------~~~~~~~~~~~~~~~~~~~~~~  288 (338)
                                   ..+|+.+|.+.+++.++..++.
T Consensus       169 ~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       169 LSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         2357788877777665554333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.48  E-value=1.5e-13  Score=114.72  Aligned_cols=188  Identities=13%  Similarity=0.150  Sum_probs=131.0

Q ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHH----hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc
Q psy17628         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI----ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA  166 (338)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  166 (338)
                      ...+++|+|+.|...+........     ++.+-...+.+..    +.+.+....+...+...+..++...+..++.+|+
T Consensus       212 ~~~~l~k~~~fw~~~l~v~g~~~~-----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri  286 (412)
T PF01306_consen  212 DVLSLFKMRNFWFFVLFVIGVAAI-----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI  286 (412)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            355677776544333322222222     3333333444443    3334445567888888999999999999999999


Q ss_pred             CCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHH
Q psy17628        167 GRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVI  246 (338)
Q Consensus       167 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  246 (338)
                      |.|+.++++..++++-.+.+++.            ++.+.....-.+.+.-......... -|+.+.+|++..++...+.
T Consensus       287 g~k~~Lllag~i~~iRi~~~~~~------------~~~~~i~~~klLH~~e~~l~lva~f-kYI~~~fd~rlsAt~y~v~  353 (412)
T PF01306_consen  287 GAKNLLLLAGVIMAIRIIGSGFA------------TNPWVISLIKLLHALEFPLLLVAAF-KYITAHFDKRLSATLYLVG  353 (412)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHT--------------SHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHS-GGGHHHHHHHH
T ss_pred             ChHhHHHHHHHHHHHHHHHHhhh------------cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHhHHHHHHHHH
Confidence            99999999999988888777664            2344555555666655555554554 7999999999999998885


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        247 -CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       247 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                       +....++..+.+.+.|.+.|+.|.+.++++.+.+.+...++..+.+++.+
T Consensus       354 ~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  354 FQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             HHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence             56688889999999999999999988888888887777777777665443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2615|consensus

Probab=99.48  E-value=1.5e-13  Score=110.55  Aligned_cols=148  Identities=14%  Similarity=0.096  Sum_probs=105.4

Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHH
Q psy17628        137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII  216 (338)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (338)
                      +..-.+.+.+.+++.+.+.++.+|.++||+|||++++++.+..++...+.+..             .+...++...+.++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-------------~~F~afv~aR~l~G  132 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-------------RNFAAFVLARFLGG  132 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhh
Confidence            44556888889999999999999999999999999999998888877776664             22333344334444


Q ss_pred             hhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---hcccceeehhhhHHH---HHHHHHHHh
Q psy17628        217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER---AFGTGVAFGTFAVYC---IIGTFFVYF  290 (338)
Q Consensus       217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~  290 (338)
                      .+..-.+.+. ++++|+++++.|+.+++..+....+|-.++|.+.+++..   ..|....++-...++   ........+
T Consensus       133 i~kgnl~v~r-AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~  211 (451)
T KOG2615|consen  133 IFKGNLSVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPW  211 (451)
T ss_pred             hccCchHHHH-HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444 899999999999999999999999999999999998876   444333222111111   221233445


Q ss_pred             hccCCCCC
Q psy17628        291 VVPETKNK  298 (338)
Q Consensus       291 ~~~~~~~~  298 (338)
                      ++|||-+.
T Consensus       212 ~lpETL~~  219 (451)
T KOG2615|consen  212 FLPETLPL  219 (451)
T ss_pred             hCCccccc
Confidence            68998443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.48  E-value=5.8e-13  Score=114.10  Aligned_cols=156  Identities=10%  Similarity=0.054  Sum_probs=111.9

Q ss_pred             HHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhh
Q psy17628        123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG  202 (338)
Q Consensus       123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (338)
                      .....+.+..+.+.+..+.++..+.+.+...++.++.|+++||+|||++++.+..+.+++.+.+...             
T Consensus        22 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-------------   88 (393)
T PRK11195         22 LLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-------------   88 (393)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-------------
Confidence            3444555667778788888999999999999999999999999999999999998887776655442             


Q ss_pred             hchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHH
Q psy17628        203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCI  282 (338)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (338)
                      ...  ++...+.+.+.+ ...+...+++.|++|+++|++++|+......++..++|.+.+.+.+.. +...+.+.+.+.+
T Consensus        89 ~~~--~~~r~l~G~~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~  164 (393)
T PRK11195         89 IHP--LLAYGLVGIGAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYL  164 (393)
T ss_pred             HHH--HHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            011  333344444444 334454489999999999999999999999999999999999887753 4444443333332


Q ss_pred             HHHHHHHhhccCCC
Q psy17628        283 IGTFFVYFVVPETK  296 (338)
Q Consensus       283 ~~~~~~~~~~~~~~  296 (338)
                      +. .+..+.+||.+
T Consensus       165 ~~-~~~~~~l~~~~  177 (393)
T PRK11195        165 LA-ALFNLFIPRLG  177 (393)
T ss_pred             HH-HHHHhcCCCCc
Confidence            22 33445567643

>KOG2504|consensus

Probab=99.48  E-value=1.2e-13  Score=120.15  Aligned_cols=182  Identities=15%  Similarity=0.227  Sum_probs=129.2

Q ss_pred             HHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch--
Q psy17628         93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP--  170 (338)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~--  170 (338)
                      .++++++     .++.+.+.......+++....++|.+.++.|++..+.+...++.++..+++.++.|+++|+...++  
T Consensus       292 ~~ll~~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~  366 (509)
T KOG2504|consen  292 LSLLKDP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV  366 (509)
T ss_pred             HHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence            4566665     444555555555556778889999999999999999999999999999999999999999988443  


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHH
Q psy17628        171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG  250 (338)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  250 (338)
                      +..++.++.+++...+...            +..+..+....+++.+.+ .+.......+.|+.+.+.-..+.|+...+.
T Consensus       367 ~~~~~ll~~gl~~~~~p~~------------~~~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~  433 (509)
T KOG2504|consen  367 LFLLTLLIAGLARLFLPFA------------TTYVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQ  433 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence            4444555555554333332            111233333334443333 333333357889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcc-cceeehhhhHHHHHHHHHHHhhcc
Q psy17628        251 SLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVP  293 (338)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  293 (338)
                      .++..++|++.+.+.|.++ |...|+..+.+.+++.... +..+
T Consensus       434 gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~-~~~~  476 (509)
T KOG2504|consen  434 GIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL-LILR  476 (509)
T ss_pred             HHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH-HHhH
Confidence            9999999999999999888 6667777777666666443 3344

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.48  E-value=3.3e-13  Score=131.00  Aligned_cols=146  Identities=11%  Similarity=0.007  Sum_probs=99.0

Q ss_pred             hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ......+.|.++++. |.+..+.+++.+..+++.++|.++.|+++|+.++++.+..+.++.+++.+.+.+..........
T Consensus       241 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  320 (1140)
T PRK06814        241 GAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPA  320 (1140)
T ss_pred             HHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccc
Confidence            345566788888764 8888889999999999999999999999998887776666655555444433321000000000


Q ss_pred             --------hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        199 --------LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER  266 (338)
Q Consensus       199 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (338)
                              ......+...+...+++++.+....+.. +++.+..|++.||+++|+.+++..++..+++.+.+.+.+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        321 QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLF-AALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHH-HHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    0001233344444455555444444444 788999999999999999999999999999988887764

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.48  E-value=4.9e-13  Score=117.35  Aligned_cols=142  Identities=14%  Similarity=0.025  Sum_probs=88.9

Q ss_pred             HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      .....+.+++.+....+....+.......++.+++.++.++++||+|+|+.+..+..+..++.+.+.......       
T Consensus       248 ~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~-------  320 (473)
T PRK10429        248 NIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAA-------  320 (473)
T ss_pred             HHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC-------
Confidence            3444445555544422444445566666788889999999999999999999888776555544432211111       


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-------PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT  270 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (338)
                      ....+..++...+.+.+.+... ...+++++|..+       .+..|...|...+...++..+++.+.+.+++..|+
T Consensus       321 ~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        321 PHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             chhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            1112233333334444444333 334467888854       23346688888999999999999999998887766

>PRK15075 citrate-proton symporter; Provisional

Probab=99.47  E-value=8.8e-13  Score=114.63  Aligned_cols=168  Identities=15%  Similarity=0.063  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhh-HHH-----HHHHHHHHHHHHHhhhhcCCchHHHHHhHH
Q psy17628        105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQ-NIV-----GFIQVIMTFFSSLLVDKAGRRPLLLISDIC  178 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~-----~~~~~~~~~~~g~l~d~~grr~~~~~~~~~  178 (338)
                      .....++..+........+....|.+.++.+.+..+.+... +..     .+...+++++.|+++||+|||+.++.+..+
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~   95 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence            34444445555555566788889999898887776654332 221     222346789999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHH
Q psy17628        179 MAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVV  258 (338)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~  258 (338)
                      ..++.+++++........    .......++...+.+.+.+....... .+++|.+|++.|++++++.....+++..+++
T Consensus        96 ~~~~~~l~~~~~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~~-~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         96 MASGTLLIAFVPGYATIG----LAAPLLVLLGRLLQGFSAGVELGGVS-VYLAEIATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHhCCcHHHHH----HHHHHHHHHHHHHhhccccccHHHHH-HHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence            888888776641110000    00011234444555555544444444 7899999999999999998877777666655


Q ss_pred             HHHHHH--------HHhcccceeehhh
Q psy17628        259 KTFDDV--------ERAFGTGVAFGTF  277 (338)
Q Consensus       259 ~~~~~~--------~~~~~~~~~~~~~  277 (338)
                      .+.+.+        .+..||+++|++.
T Consensus       171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~  197 (434)
T PRK15075        171 LLGYLLNQWLSPAQMAEWGWRIPFLIG  197 (434)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHH
Confidence            554433        3567898888753

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.47  E-value=6.3e-13  Score=113.49  Aligned_cols=164  Identities=13%  Similarity=0.012  Sum_probs=111.5

Q ss_pred             hHHHHHhhHHHH-HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH-HhHHHHHHHHHHHHHHHHhhccc
Q psy17628        120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI-SDICMAICIGALGYYFYLLKLDE  197 (338)
Q Consensus       120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  197 (338)
                      ........|.++ ++.|.+..+.++..+...+...+.+++.|+++||+|||+.++. +.....++.++....        
T Consensus        13 ~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--------   84 (375)
T TIGR00899        13 GALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN--------   84 (375)
T ss_pred             HHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc--------
Confidence            445556666665 4569999999999999999999999999999999999887654 444444444443332        


Q ss_pred             chhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLA--LGVICILGSLIEFVVVKTFDDVERAFGTGVAFG  275 (338)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (338)
                          .+.+..++...+.+.+.+ ...+....+..|..|++.|+.+  .+.......++..+++.+.+.+.+..+|+..++
T Consensus        85 ----~~~~~l~~~~~~~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~  159 (375)
T TIGR00899        85 ----RNYFLLLVLGVLLSSFAS-TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFL  159 (375)
T ss_pred             ----chHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHH
Confidence                111222222333332222 2333333566777777766644  567777778889999999998888899999998


Q ss_pred             hhhHHHHHHHHHHHhhccCCC
Q psy17628        276 TFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      +.+.+.++..++.++++||.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       160 TAALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             HHHHHHHHHHHHHHHhCCCcc
Confidence            888777777666666677654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.47  E-value=1.4e-12  Score=114.91  Aligned_cols=153  Identities=13%  Similarity=0.065  Sum_probs=107.8

Q ss_pred             chHHHHHhhHHHH-HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHHHHHHHHHHHHHHhhcc
Q psy17628        119 GINVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLD  196 (338)
Q Consensus       119 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (338)
                      +++....+++.++ ++.|++..+................+++|+++|| +|||+.+..+.++.+++..++.+.       
T Consensus        36 ~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~-------  108 (500)
T PRK09584         36 GYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS-------  108 (500)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-------
Confidence            3566777778777 4569888887777766665555556789999999 599999999998888887666543       


Q ss_pred             cchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceee
Q psy17628        197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAF  274 (338)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (338)
                          ........+...+.+.+.+.... ...+++.|.+|++.  |..+.++.+...++|..++|.+.+++.+..||++.|
T Consensus       109 ----~~~~~~l~~~~~l~gig~g~~~~-~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F  183 (500)
T PRK09584        109 ----GHDAGIVYMGMATIAVGNGLFKA-NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAF  183 (500)
T ss_pred             ----cccHHHHHHHHHHHHHhhhcccC-CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence                00112223333444444443333 33368899998643  456788889999999999999999999999999888


Q ss_pred             hhhhHHHHH
Q psy17628        275 GTFAVYCII  283 (338)
Q Consensus       275 ~~~~~~~~~  283 (338)
                      .+.++...+
T Consensus       184 ~i~~i~~~i  192 (500)
T PRK09584        184 ALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHH
Confidence            876644333

>PTZ00207 hypothetical protein; Provisional

Probab=99.47  E-value=6.8e-13  Score=116.64  Aligned_cols=166  Identities=9%  Similarity=0.003  Sum_probs=114.6

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      .+.+..+.+.+.++.|++..+.++...+. .....+.++.|++.||+|+|+++.++.++..++.+++++......     
T Consensus        43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i-----  116 (591)
T PTZ00207         43 MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI-----  116 (591)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc-----
Confidence            45667788888888899998888777653 333456678899999999999999999999999887776411100     


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  279 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                       ..+.+.+.+...+.+.+.+....... ..+.++|| +.||++.|+......+|+.+.+.+...+.. .+|+..+++.++
T Consensus       117 -~~s~~~l~l~r~l~G~G~~~~~~~~~-~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~v  192 (591)
T PTZ00207        117 -EGSVVRLSVYNGLMTLGCMLFDLGAV-VTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMS  192 (591)
T ss_pred             -cCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence             01223334444444444333333333 56788887 679999999999999999876666555443 356667777777


Q ss_pred             HHHHHHHHHHhhccCC
Q psy17628        280 YCIIGTFFVYFVVPET  295 (338)
Q Consensus       280 ~~~~~~~~~~~~~~~~  295 (338)
                      +.++..++.+.++++.
T Consensus       193 l~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        193 FALVVGILAIVFMRLP  208 (591)
T ss_pred             HHHHHHHHHHhheeCC
Confidence            7777776666666543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.47  E-value=3.5e-12  Score=111.69  Aligned_cols=153  Identities=10%  Similarity=0.039  Sum_probs=115.4

Q ss_pred             HHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        123 VIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       123 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      ....+|.+.++. |.++...+++.+..+++.++|+++.+++.+|+++++++..+.+..+++.+.+++.            
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~------------  304 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS------------  304 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc------------
Confidence            345577777654 7788888999999999999999999999999999999888888877777666553            


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC  281 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (338)
                      .+.+.....+++.+.+......... +.+.+..|++.||+.+++..+....+..++..+.|.+.+..|.+..+.+.+++.
T Consensus       305 ~~~~~~~~~l~l~G~~~~~~~~~~~-t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~l  383 (524)
T PF05977_consen  305 PSFWLALIALFLAGAAWIIANSSLN-TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAAL  383 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            1233444444455544444333333 677888999999999999999988888899999999999999877776655554


Q ss_pred             HHHHHHH
Q psy17628        282 IIGTFFV  288 (338)
Q Consensus       282 ~~~~~~~  288 (338)
                      +++.++.
T Consensus       384 ll~~~~~  390 (524)
T PF05977_consen  384 LLSALIA  390 (524)
T ss_pred             HHHHHHH
Confidence            4444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.45  E-value=3e-13  Score=98.36  Aligned_cols=137  Identities=17%  Similarity=0.251  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccc
Q psy17628        145 QNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGP  224 (338)
Q Consensus       145 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                      .+...++..++.++.|++.||+|||+.+..+.....++.+.....            .+.+.......+.+.+.+... +
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~-~   70 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------------SNITVLIIARFLQGFGAAFAL-V   70 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHHHH-H
Confidence            345567888999999999999999999988887777776655432            112233334444444444333 3


Q ss_pred             cceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccC
Q psy17628        225 IPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE  294 (338)
Q Consensus       225 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (338)
                      ....++.|.+|++.|++++++.+....++..+++.+.+.+.+..+|+..+.+.+.+..+..+..++..||
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            3447889999999999999999999999999999999998888888888877777777776666665554

>KOG2532|consensus

Probab=99.45  E-value=1e-12  Score=113.01  Aligned_cols=151  Identities=12%  Similarity=0.046  Sum_probs=128.0

Q ss_pred             ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHH
Q psy17628        134 TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI  213 (338)
Q Consensus       134 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (338)
                      .+++..+.+++.+....+.+++.+.+|+++||+|-|+++..+.++.++..++......          ...+..++...+
T Consensus        68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~----------~~~~~~~~~R~l  137 (466)
T KOG2532|consen   68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS----------IGFYLLLVLRFL  137 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----------hcchhhHHHHHH
Confidence            3667788899999999999999999999999999999999999999988888776522          122345666777


Q ss_pred             HHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cccceeehhhhHHHHHHHHHHHhhc
Q psy17628        214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA-FGTGVAFGTFAVYCIIGTFFVYFVV  292 (338)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  292 (338)
                      .+.+.+..+..+. .+.+.+.|+++|++..++......+|..+.-++.|.+.+. .||+..|++.++++++..++.+++.
T Consensus       138 qGl~~g~~~pa~~-~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~  216 (466)
T KOG2532|consen  138 QGLGQGVLFPAIG-SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY  216 (466)
T ss_pred             hHHHHhHHHhhhh-ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            7777776666666 8999999999999999999999999999999999999988 9999999999999988887776666


Q ss_pred             cCC
Q psy17628        293 PET  295 (338)
Q Consensus       293 ~~~  295 (338)
                      .|+
T Consensus       217 ~d~  219 (466)
T KOG2532|consen  217 SDS  219 (466)
T ss_pred             cCC
Confidence            554

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.45  E-value=3.8e-12  Score=104.45  Aligned_cols=188  Identities=14%  Similarity=0.145  Sum_probs=129.5

Q ss_pred             hhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcC
Q psy17628         89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG  167 (338)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g  167 (338)
                      +.+++++.+++     .+..+++..+...-+.+........+-. ++|++..+.........+..++|++++|++.||+|
T Consensus       242 ~~t~k~i~~~~-----~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg  316 (438)
T COG2270         242 KSTFKEIRGRK-----NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFG  316 (438)
T ss_pred             HHHHHHHhccc-----chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34566665554     2333344444444456677777777776 66999999999999999999999999999999999


Q ss_pred             CchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHH
Q psy17628        168 RRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVIC  247 (338)
Q Consensus       168 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  247 (338)
                      .|+++..+.++..+..+...+.            ......+++..+.+...+.. ....-++.+++.|+++-++.+|+.+
T Consensus       317 ~k~vl~~~lvi~~~~~~~~~~~------------~~~~~f~i~gll~g~s~G~~-qA~SRSy~~~lvp~~k~~~fFglya  383 (438)
T COG2270         317 SKPVLMIGLVILSIAALYLIFL------------EGELDFWILGLLVGTSLGGA-QASSRSYLARLVPKGKEGRFFGLYA  383 (438)
T ss_pred             CceeehHHHHHHHHHHHHHHHc------------cccHHHHHHHHHHHHhcchH-HHHHHHHHHHhCCCccccceeehhh
Confidence            9999988877776665544332            11223333334444444433 3444579999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccce-eehhhhHHHHHHHHHHHhhccCC
Q psy17628        248 ILGSLIEFVVVKTFDDVERAFGTGV-AFGTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  295 (338)
                      ..+...+..+|.+.+.+.+.+|... .+....++..++ ++.++..|+.
T Consensus       384 ltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iG-l~~L~~v~~~  431 (438)
T COG2270         384 LTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIG-LLLLLRVKVP  431 (438)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhh-HhhEEeecCC
Confidence            9999999999999999888777533 233333333333 3344445544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.45  E-value=1.4e-11  Score=106.35  Aligned_cols=232  Identities=13%  Similarity=0.061  Sum_probs=123.2

Q ss_pred             echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (338)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~   77 (338)
                      +|..+++.++..      ||+.|++.   +++.++..++.++.+||+++.   +++.              .+       
T Consensus       151 ~~~~~g~~lg~~l~~~~gw~~~f~~~---~~~~~i~~~~~~~~lp~~~~~---~~~~--------------~~-------  203 (413)
T PRK15403        151 VAPIIGPLSGAALMHFVHWKVLFAII---AVMGLIAFVGLLLAMPETVKR---GAVP--------------FS-------  203 (413)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHH---HHHHHHHHHHHHHhCCCCccc---cCCC--------------CC-------
Confidence            344555555543      99999999   777666555556678987530   0000              00       


Q ss_pred             HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHH
Q psy17628         78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMT  156 (338)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~  156 (338)
                             .+....+++++++++..+...+.     .............+.|.++++. |++..+.++.......+..+++
T Consensus       204 -------~~~~~~~~~~ll~~~~~~~~~l~-----~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~  271 (413)
T PRK15403        204 -------AKSVLRDFRNVFRNRLFLTGAAT-----LSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVAN  271 (413)
T ss_pred             -------hHHHHHHHHHHHcCHHHHHHHHH-----HHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence                   00011245667777633322111     1112222445666788888776 8888888888877888888888


Q ss_pred             HHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc
Q psy17628        157 FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP  236 (338)
Q Consensus       157 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  236 (338)
                      .+.+.+.++..+++.......+..++..++....... .      ...+..++...+++.+.+....... .. +..-..
T Consensus       272 ~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~-~------~~~~~~~~~~~l~~~G~~~~~p~~~-~~-al~~~~  342 (413)
T PRK15403        272 AIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW-P------HVWLWSVLGTSLYAFGIGLIFPTLF-RF-TLFSNN  342 (413)
T ss_pred             HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc-c------ccHHHHHHHHHHHHHHHHHHhHHHH-HH-HhccCC
Confidence            8887766544444443333333333332222211000 0      1111123344444444443333222 11 111122


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHH
Q psy17628        237 DVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIG  284 (338)
Q Consensus       237 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (338)
                      ..+|++.++.+.....+...++...+++.+. +...++....+++.+.
T Consensus       343 ~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~  389 (413)
T PRK15403        343 LPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI  389 (413)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence            2478999998888888888888887776554 4445565555444433

>PRK09952 shikimate transporter; Provisional

Probab=99.45  E-value=2.1e-12  Score=112.26  Aligned_cols=172  Identities=10%  Similarity=-0.003  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHhhhcchHHHHHhhHHHHH-hc--cCCCCCcchhh-----HHHHHHHHHHHHHHHHhhhhcCCchHHHHHh
Q psy17628        105 TIVIVGLLCFLSFSGINVVIFYLKRILI-AT--NSKIISPNYGQ-----NIVGFIQVIMTFFSSLLVDKAGRRPLLLISD  176 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--g~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~  176 (338)
                      .+....+................|.+.. +.  +.++. .+...     ....++..+++++.|+++||+|||+.+..+.
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~  101 (438)
T PRK09952         23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTV  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHH
Confidence            3333333333333333344445554443 33  44444 23332     2344556788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHH
Q psy17628        177 ICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFV  256 (338)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~  256 (338)
                      .+.+++.+++++........    .......++...+.+.+.+..+.... .++.|.+|++.|+...+.......+|..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~~-~~~~e~~p~~~rg~~~~~~~~g~~~G~~l  176 (438)
T PRK09952        102 WMMGIATALIGLLPSFSTIG----WWAPVLLVTLRAIQGFAVGGEWGGAA-LLAVESAPKNKKAFYSSGVQVGYGVGLLL  176 (438)
T ss_pred             HHHHHHHHHHhcCCcHHHHH----HHHHHHHHHHHHHHHhhhcccHHHHH-HHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            99998888777641111000    00011234445556666555544444 78999999999999998888877777777


Q ss_pred             HHHHHHHHH--------HhcccceeehhhhHHHH
Q psy17628        257 VVKTFDDVE--------RAFGTGVAFGTFAVYCI  282 (338)
Q Consensus       257 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~  282 (338)
                      ++.+...+.        ..+||+..|++.++..+
T Consensus       177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence            766555443        24789988876655443

>PRK10133 L-fucose transporter; Provisional

Probab=99.44  E-value=3.4e-12  Score=110.70  Aligned_cols=168  Identities=13%  Similarity=-0.003  Sum_probs=107.2

Q ss_pred             HHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHH-HHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc
Q psy17628         92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (338)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr  169 (338)
                      .++++++|..+...+.. +...    ........|.+.+ .++ .|+++.+.+.......++.+++.++++++.||+|+|
T Consensus       251 ~~~ll~~~~~~~~~l~~-~~~~----~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~  325 (438)
T PRK10133        251 LSRLARIRHWRWAVLAQ-FCYV----GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH  325 (438)
T ss_pred             HHHHHhCchHHHHHHHH-HHHH----HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            45667776443322221 1111    1233344456655 344 599999999999999999999999999999999999


Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHH
Q psy17628        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL  249 (338)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  249 (338)
                      +++..+..+..+.+.+..+.           .  ....+..+.+.+++.+..+.... +...|.+|++ .+++.++.. .
T Consensus       326 ~~l~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~l~glg~~~i~P~~~-s~a~~~~~~~-~~~as~l~~-~  389 (438)
T PRK10133        326 KVLAAYALIAMALCLISAFA-----------G--GHVGLIALTLCSAFMSIQYPTIF-SLGIKNLGQD-TKYGSSFIV-M  389 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-----------C--ChHHHHHHHHHHHHHHHHHHHHH-HHHHcccchh-hccchhHHh-H
Confidence            99888766665544333221           0  11223344455556665555444 6777777753 567777765 4


Q ss_pred             HHHHHHHHHHHHHHHHHhcc-cceeehhhhHH
Q psy17628        250 GSLIEFVVVKTFDDVERAFG-TGVAFGTFAVY  280 (338)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  280 (338)
                      ..+++.++|++.+.+.+..| .+..+++...+
T Consensus       390 ~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~  421 (438)
T PRK10133        390 TIIGGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_pred             HhccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            55678889999999888876 45555543333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.43  E-value=4.7e-12  Score=109.72  Aligned_cols=165  Identities=13%  Similarity=0.086  Sum_probs=101.6

Q ss_pred             hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ......+.|.++++ .|++..+.+...+...+...+++++.|+++||+|||+.++.+..+.+++............    
T Consensus        26 ~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~----  101 (420)
T PRK09528         26 WSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPL----  101 (420)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            44567777777776 6999999999999999999999999999999999999988765555443322211100000    


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCC--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT--PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGT  276 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (338)
                          ..........+.+...+....... ....++.+  .+.++..+|.....+.+|..+++.+.+.+.+ .+|+..|++
T Consensus       102 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~  175 (420)
T PRK09528        102 ----LQYNILLGAIVGGIYLGFGFLAGA-GAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWL  175 (420)
T ss_pred             ----HHHHHHHHHHHHHHHhhhhhccch-hhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHH
Confidence                000001111111111222222111 12222222  2345777788888889999999999887766 478788877


Q ss_pred             hhHHHHHHHHHHHhhccC
Q psy17628        277 FAVYCIIGTFFVYFVVPE  294 (338)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~  294 (338)
                      .+++.++..++.+...++
T Consensus       176 ~~~~~~~~~~~~~~~~~~  193 (420)
T PRK09528        176 GSGSALILLVLLFFAKPD  193 (420)
T ss_pred             HHHHHHHHHHHHhccccc
Confidence            766666655444443333

>PRK09848 glucuronide transporter; Provisional

Probab=99.43  E-value=1.9e-12  Score=113.06  Aligned_cols=164  Identities=12%  Similarity=-0.055  Sum_probs=100.9

Q ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc
Q psy17628         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (338)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr  169 (338)
                      .++++++++..+...+..++.     ..+........|++.++. |.+....++......++.+++.++.++++||+|+|
T Consensus       220 ~~~~l~~n~~f~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~  294 (448)
T PRK09848        220 SLQTLKRNRPLFMLCIGALCV-----LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK  294 (448)
T ss_pred             HHHHHhCCchHHHHHHHHHHH-----HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            466778877433222222221     112334444566666554 64444333334444566788899999999999999


Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch-------hhhhH
Q psy17628        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD-------VKGLA  242 (338)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~  242 (338)
                      +.+.++..+..++.+.+.+.   .       ..+.+...+...+.+.+.+.... ..+++.+|..|.+       .+|..
T Consensus       295 ~~~~~g~~~~~i~~~~~~~~---~-------~~~~~~~~~~~~l~g~G~~~~~~-~~~al~~~~~~~~~~~~g~r~~G~~  363 (448)
T PRK09848        295 NTFLIGALLGTCGYLLFFWV---S-------VWSLPVALVALAIASIGQGVTMT-VMWALEADTVEYGEYLTGVRIEGLT  363 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHc---C-------chhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHhhCccchhHH
Confidence            99999887777766554431   0       01122333333444444444433 3336777776643       45899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628        243 LGVICILGSLIEFVVVKTFDDVERAFGT  270 (338)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (338)
                      +|+.+....++..+++.+.+.+++..|+
T Consensus       364 ~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        364 YSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999888877665

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.43  E-value=2.3e-12  Score=110.20  Aligned_cols=139  Identities=11%  Similarity=-0.058  Sum_probs=106.8

Q ss_pred             hhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy17628        116 SFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKL  195 (338)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (338)
                      ..........+.|.+.++.|.|..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.......      
T Consensus        18 ~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~------   91 (381)
T PRK03633         18 LTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM------   91 (381)
T ss_pred             HHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence            33345667788999999999999999999999999999999999999999999999999988888877665543      


Q ss_pred             ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628        196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA  267 (338)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (338)
                            ++.+..++...+.+.+.+....... ..+.+..+++.|+++++.......+|..+++.+.+.+.+.
T Consensus        92 ------~~~~~l~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633         92 ------VGFWSWLAWRFVAGIGCAMIWVVVE-SALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             ------ccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence                  1223334444444544443322222 4456778888999999999999999999999888876554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.42  E-value=2.1e-12  Score=116.29  Aligned_cols=187  Identities=12%  Similarity=-0.002  Sum_probs=128.2

Q ss_pred             HHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHH
Q psy17628        107 VIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGAL  186 (338)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~  186 (338)
                      +...+..+.+...........+.+.++++++..+.+++.+.+.++..++.++.+++.||+|||+.+.++.++++++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            33333344333333445556677778889999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHhhcccc--------------------h----------------hh--hhch-HHHHHHHHHHHhhcccccccce
Q psy17628        187 GYYFYLLKLDEK--------------------L----------------VD--GLGL-LPVASLAIYIIVFSVGFGPIPG  227 (338)
Q Consensus       187 ~~~~~~~~~~~~--------------------~----------------~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                      ++..+.......                    .                ..  ...+ .+++..++.+.+.+.. .+...
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~-~~~~~  194 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI-FPLGI  194 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc-hhcCc
Confidence            765322100000                    0                00  0112 2334455555544443 34444


Q ss_pred             eeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-c---------------------cceeehhhhHHHHHHH
Q psy17628        228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF-G---------------------TGVAFGTFAVYCIIGT  285 (338)
Q Consensus       228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------------~~~~~~~~~~~~~~~~  285 (338)
                      +++.|.+|++.|+...++.+....+|..+++.+.+.+.+.+ +                     |+..|++.+++.++.+
T Consensus       195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~  274 (633)
T TIGR00805       195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS  274 (633)
T ss_pred             hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999998888776543 1                     4445666665555555


Q ss_pred             HHHHhhccCC
Q psy17628        286 FFVYFVVPET  295 (338)
Q Consensus       286 ~~~~~~~~~~  295 (338)
                      +. +++.|++
T Consensus       275 v~-l~~~p~~  283 (633)
T TIGR00805       275 IP-FFFFPKA  283 (633)
T ss_pred             HH-HHhCccc
Confidence            43 3445654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.42  E-value=5.1e-13  Score=116.73  Aligned_cols=154  Identities=15%  Similarity=0.102  Sum_probs=109.9

Q ss_pred             HHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhh
Q psy17628        124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL  203 (338)
Q Consensus       124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (338)
                      ...++.+.++.| +..+..++.....++..++.++.|.++|.+|||..++.+.++..++.++.+..            ++
T Consensus        64 a~~l~~I~~diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------------~~  130 (599)
T PF06609_consen   64 ASILPYINADIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------------QN  130 (599)
T ss_pred             HHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC------------Cc
Confidence            344567778888 45667788889999999999999999999999999999999999999887654            22


Q ss_pred             chHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHH
Q psy17628        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCII  283 (338)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (338)
                      ....+....+.+.+.+...  .....++|+.|.+.|+.+.++...........++.+...+..+.+|||.+++..+...+
T Consensus       131 ~~~~iag~~l~GvgaG~~~--~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i  208 (599)
T PF06609_consen  131 MNTFIAGMVLYGVGAGVQE--LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGI  208 (599)
T ss_pred             HHHHHHHHHHHHHhhHHHH--HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHH
Confidence            2334445555555433322  23346899999999988877665544343345555555555567899999988887777


Q ss_pred             HHHHHHhhc
Q psy17628        284 GTFFVYFVV  292 (338)
Q Consensus       284 ~~~~~~~~~  292 (338)
                      ..++.+++.
T Consensus       209 ~~vl~~~fY  217 (599)
T PF06609_consen  209 ALVLIFFFY  217 (599)
T ss_pred             HHHHHHHHh
Confidence            665554433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.42  E-value=6.9e-12  Score=107.81  Aligned_cols=198  Identities=11%  Similarity=-0.042  Sum_probs=112.4

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||+.|++.   +++.++..++..+++||+++.    ++ ++                             ++.+.++++.
T Consensus       161 ~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~----~~-~~-----------------------------~~~~~~~~~~  203 (394)
T PRK11652        161 WRACYLFL---LLLGAGVTFSMARWMPETRPA----DA-RR-----------------------------TRVLASYRTL  203 (394)
T ss_pred             hHHHHHHH---HHHHHHHHHHHHHhCCccCcc----cc-ch-----------------------------hHHHHHHHHH
Confidence            99999998   666666555566678887531    00 00                             0012244556


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  174 (338)
                      ++++..+...... ...    ..+......+.+.++++ .|.+..+.++......++.+++.++.+++.||++++...  
T Consensus       204 ~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--  276 (394)
T PRK11652        204 LSNRRFNCYLLML-IGT----LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--  276 (394)
T ss_pred             HcChHHHHHHHHH-HHH----HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            6665333222211 111    11233444556666666 588888888888788888888889999999998833322  


Q ss_pred             HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (338)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (338)
                      ......++.+.........       ....+.......+.+.+.+....... .+..|.+| +.++++.++.+....+++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~-~~~g~~~~~~~~~~~lg~  347 (394)
T PRK11652        277 SVICCLLAGLLMWIPGWFG-------VMNVWTLLVPAALFFFGAGMLFPLAT-SGAMEPFP-YLAGTAGALLGGLQNIGS  347 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcc-ccchHHHHHHHHHHHHHH
Confidence            2222222222111110000       01122333334444444444333333 56678777 578999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17628        255 FVVVKTFDDVER  266 (338)
Q Consensus       255 ~~~~~~~~~~~~  266 (338)
                      .+++.+.+.+..
T Consensus       348 ~~~~~~~~~~~~  359 (394)
T PRK11652        348 GLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHccC
Confidence            999988876543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.40  E-value=3.1e-12  Score=108.88  Aligned_cols=124  Identities=12%  Similarity=0.101  Sum_probs=83.6

Q ss_pred             hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ......+.|.++++. |++..+.+.......+..+++.++.|+++||+|||+.+..+......+..++.....  .    
T Consensus       241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~----  314 (366)
T TIGR00886       241 FLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV--S----  314 (366)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC--C----
Confidence            345667778787664 888888888888899999999999999999999998887776655555444433210  0    


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHH
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI  253 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~  253 (338)
                        ....+.......+...+.+.+.+.. +.+.+|..| +.+|+++|+.+..+++|
T Consensus       315 --~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       315 --PLSLAVFIVLFVALFFFSGAGNGST-FALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             --cchHHHHHHHHHHHHHHhccccchh-hhcchhhch-hhcccHHHHHHHhccCC
Confidence              0012222233333344444444443 377888887 58999999988887664

>KOG3764|consensus

Probab=99.40  E-value=4.5e-13  Score=108.53  Aligned_cols=151  Identities=13%  Similarity=0.086  Sum_probs=128.3

Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHH
Q psy17628        135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY  214 (338)
Q Consensus       135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (338)
                      +-+.++.+++.....+.+++.+++.|.++||+|+|..+++|+.++..+.+++++.            +.....++...+-
T Consensus       102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg------------~sy~~l~vAR~LQ  169 (464)
T KOG3764|consen  102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG------------NSYPMLFVARSLQ  169 (464)
T ss_pred             cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc------------chhHHHHHHHHHh
Confidence            4467788999999999999999999999999999999999999999999988875            2233455566666


Q ss_pred             HHhhcccccccceeeeeccCCchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhcc
Q psy17628        215 IIVFSVGFGPIPGVMMGELFTPDV-KGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP  293 (338)
Q Consensus       215 ~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (338)
                      +.+.+....... ++++|.||.+. |++++|+.-.+..+|..++|++.|.+++..|.+.+|.+++.++++...+.++.++
T Consensus       170 gvgsA~~~tsgl-amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  170 GVGSAFADTSGL-AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             hhhHHHHHhhhH-HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence            666666655555 89999999876 6999999999999999999999999999999999999999999999988887776


Q ss_pred             CCCCC
Q psy17628        294 ETKNK  298 (338)
Q Consensus       294 ~~~~~  298 (338)
                      .++..
T Consensus       249 p~~~~  253 (464)
T KOG3764|consen  249 PTEMD  253 (464)
T ss_pred             ccccC
Confidence            55443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.39  E-value=5.5e-12  Score=108.66  Aligned_cols=190  Identities=12%  Similarity=0.073  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhh----hcCCchHHHHH-hHHH
Q psy17628        105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD----KAGRRPLLLIS-DICM  179 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~~~-~~~~  179 (338)
                      ++.........++. +.....+.+.++++.|.+....+.......+..++.+++.|+++|    |+|||+.++.+ ....
T Consensus         6 li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~   84 (477)
T TIGR01301         6 LLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV   84 (477)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence            34444444444443 566777888889999999999999999999999999999999999    59999998775 4444


Q ss_pred             HHHHHHHHHHHHHhhcc-cc-hhhhhc---hHHHHHHHHHHHhhcccccccceeeeeccCCchhh--hhHHHHHHHHHHH
Q psy17628        180 AICIGALGYYFYLLKLD-EK-LVDGLG---LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK--GLALGVICILGSL  252 (338)
Q Consensus       180 ~~~~~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~~  252 (338)
                      .++..++.+........ +. ......   +..++.+.+..+..+....+.. ++++|.+|+++|  +.+.++.+...++
T Consensus        85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~r-ALiaDl~p~~~~~~~~a~~~~~~~~~l  163 (477)
T TIGR01301        85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCR-AFLADLTGGDARRTRIANAYFSFFMAI  163 (477)
T ss_pred             HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHHHH
Confidence            44444444321110000 00 000011   1223333344445555555665 899999998866  5788888888888


Q ss_pred             HHHHHHHHHHHH--HHhc-------------ccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        253 IEFVVVKTFDDV--ERAF-------------GTGVAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       253 ~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      |+.+++.+.+..  .+..             +.+..|++.+++.++..++..+..+|..
T Consensus       164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            888887766543  1211             2344566666666666667777777754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0569|consensus

Probab=99.39  E-value=2.7e-12  Score=109.49  Aligned_cols=145  Identities=14%  Similarity=0.061  Sum_probs=102.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhccc
Q psy17628        142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVG  221 (338)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                      +...++..+++++|+++.++++||+|||..+++..++..++.+++.......         .....++..++.+...+..
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~---------~~e~li~GR~i~Gl~~gl~  133 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAP---------SFEMLILGRLIVGLACGLS  133 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHhHHH
Confidence            4556778899999999999999999999999998888888877776653322         2335566666777677766


Q ss_pred             ccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHh-cccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628        222 FGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF-DDVERA-FGTGVAFGTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       222 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      ....+ .|+.|+.|.+.||....+......+|..++..+. +.+.+. ..|...+....+ ..+...+.+.+.||+.+
T Consensus       134 ~~~~p-myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i-~~~~~l~~l~~~PESPk  209 (485)
T KOG0569|consen  134 TGLVP-MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLI-PALLQLALLPFLPESPK  209 (485)
T ss_pred             HHHHH-HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHH-HHHHHHHHHhcCCCCcc
Confidence            66666 7999999999999988888888777777774444 333332 235433333333 33444455566899854

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.39  E-value=3.4e-11  Score=104.57  Aligned_cols=205  Identities=13%  Similarity=0.119  Sum_probs=135.7

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      |++...+.   +++.++..++..+..+|.++      +.++                         .+++..-+..++++
T Consensus       176 ~~~~~~v~---~iv~~v~~~i~~~~~ke~~~------~~~~-------------------------~~~~~~~~~~~~~~  221 (428)
T PF13347_consen  176 YRWMALVL---AIVGLVFFLITFFFVKERSV------EVTE-------------------------QEKKISLRDSLRSL  221 (428)
T ss_pred             HHHHHHHH---HHHHHHHhhhhhheeeeccc------cccc-------------------------cccccccccchhhh
Confidence            88888888   77777767777777777211      0000                         00111223456777


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  174 (338)
                      +++|.+++ .+....+...    +........+++.+.. |.+ ...+.......+..+++.++.++++||+|+|+.+..
T Consensus       222 ~~nr~~~~-l~~~~~~~~~----~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~  295 (428)
T PF13347_consen  222 FRNRPFRI-LLLAFFLQWL----AFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII  295 (428)
T ss_pred             cccchHHH-HHHHHHHHHh----hhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence            77764332 2222222222    2334444556666654 433 556677778889999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch-------hhhhHHHHHH
Q psy17628        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD-------VKGLALGVIC  247 (338)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~~~~~  247 (338)
                      +..+.+++.+.+.+...          .+.+..++...+.+.+.+... ..++++++|+.+.+       ..|..+|+.+
T Consensus       296 ~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~  364 (428)
T PF13347_consen  296 GLLLAALGFLLLFFLGP----------GSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNS  364 (428)
T ss_pred             hHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhh
Confidence            99998888777665421          233455555566666665544 55568999988743       3488899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccc
Q psy17628        248 ILGSLIEFVVVKTFDDVERAFGTG  271 (338)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~  271 (338)
                      +...++..+++.+.+.+++..|+.
T Consensus       365 ~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  365 FFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCcC
Confidence            999999999999999888776654

>PRK10133 L-fucose transporter; Provisional

Probab=99.39  E-value=9e-12  Score=108.09  Aligned_cols=135  Identities=12%  Similarity=-0.055  Sum_probs=102.4

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ......+.|.+.+++|.+..+.++..+...++..+++++.|+++||+|||+++..+..+.+++.+++.....        
T Consensus        42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~--------  113 (438)
T PRK10133         42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--------  113 (438)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            456677888888888999999999999999999999999999999999999999999999888876532100        


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDV  264 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  264 (338)
                       ..+....++...+.+.+.+....... .++.|..|.+.|...+++......+|..+++.+.+.+
T Consensus       114 -a~~~~~ll~~r~l~G~g~g~~~~~~~-~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        114 -IMNYTLFLVGLFIIAAGLGCLETAAN-PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             -cCCHHHHHHHHHHHHHHHHHHHhhHH-HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11223444555566666665544444 5677877777777778888888888888888776543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.39  E-value=3.4e-11  Score=101.89  Aligned_cols=165  Identities=18%  Similarity=0.107  Sum_probs=110.0

Q ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc
Q psy17628         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (338)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr  169 (338)
                      .+...++|+.++...+     .....+.+.+.......++.+.. |.+.............+.+++.++..++++|+|+|
T Consensus       228 ~~~~~~~Nrp~~~~l~-----~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk  302 (467)
T COG2211         228 SFLLIFKNRPLLLLLL-----MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK  302 (467)
T ss_pred             HHHHHHccchHHHHHH-----HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH
Confidence            4456777764333322     22222223444444445554443 55666666677777777788899999999999999


Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc-------hhhhhH
Q psy17628        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-------DVKGLA  242 (338)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~  242 (338)
                      +++..+.++.+++.+++.+..          .++....++..++.+.+.+ ...+++|++++|..+-       +.-|..
T Consensus       303 ~~~~~~~~~~~i~~~~~~f~~----------~~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~  371 (467)
T COG2211         303 KLFLIGLLLLAVGYLLLYFTP----------AGSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIV  371 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc----------CcchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhH
Confidence            999999888888887776651          1122333333344444444 4466778899888543       223888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17628        243 LGVICILGSLIEFVVVKTFDDVERAFGTG  271 (338)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (338)
                      .|...++..++.+++..+.++.++..|+.
T Consensus       372 ~s~~tF~~K~g~ala~~~~g~~L~~~Gyv  400 (467)
T COG2211         372 YSGMTFFRKLGLALAGFIPGWILGAIGYV  400 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88899999999999999999988877753

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.38  E-value=4.7e-12  Score=109.07  Aligned_cols=169  Identities=15%  Similarity=0.132  Sum_probs=118.5

Q ss_pred             hhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-----CCch-HHHHHhHHHHHHHHHHHH
Q psy17628        115 LSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRP-LLLISDICMAICIGALGY  188 (338)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~~~~~~~~~~~~~~~~~~  188 (338)
                      .+..........+|.++++.|++.++.++.......  .+..+++|+++||+     |||+ .+..+..+.+++...+.+
T Consensus        10 ~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~   87 (402)
T PRK11902         10 ASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF   87 (402)
T ss_pred             HHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh
Confidence            344446677788999999999999999988666665  68889999999999     7776 677777777666665544


Q ss_pred             HHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q psy17628        189 YFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA-  267 (338)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  267 (338)
                      ..         .....+.......+.+.+.+ ...+...+++.|.+|+++|+++.++......++..+++.+...+.+. 
T Consensus        88 ~~---------~~~~~~~l~~~~~~~~~~~~-~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~  157 (402)
T PRK11902         88 CP---------PHAALWPLAGLAVLVAFLSA-SQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV  157 (402)
T ss_pred             cC---------ccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence            20         00112222323233333333 33344447899999999999999999988888888888888888775 


Q ss_pred             cccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        268 FGTGVAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      .||+..|++.+++.++..+. .+..||++
T Consensus       158 ~gw~~~f~i~a~~~l~~~l~-~~~~~e~~  185 (402)
T PRK11902        158 LGWGNTYLLMAGLMLAGALT-TLWAPEPE  185 (402)
T ss_pred             cCHHHHHHHHHHHHHHHHHH-HHhcCCCc
Confidence            48999888877766655443 34466653

>PRK09669 putative symporter YagG; Provisional

Probab=99.38  E-value=1.3e-11  Score=107.65  Aligned_cols=118  Identities=10%  Similarity=-0.023  Sum_probs=77.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccc
Q psy17628        143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGF  222 (338)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                      .......+..+++.++.++++||+|+|+.+..+..+.++....+...   .       ..+.+..++...+.+.+.+.. 
T Consensus       268 ~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~i~g~~~~~~-  336 (444)
T PRK09669        268 LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI---P-------PSNVWLIFALNILFNFIQNLT-  336 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---C-------cchHHHHHHHHHHHHHHHHHH-
Confidence            34445567777888899999999999999988766555433222221   0       112223333344444444433 


Q ss_pred             cccceeeeeccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17628        223 GPIPGVMMGELFT-------PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTG  271 (338)
Q Consensus       223 ~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (338)
                      .+..+++++|..+       .+..|...|+.++...++..+++.+.+.+.+..|+.
T Consensus       337 ~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        337 TPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3455578888875       233467788889999999999999999998887763

>TIGR00901 2A0125 AmpG-related permease

Probab=99.37  E-value=5.5e-12  Score=106.87  Aligned_cols=164  Identities=14%  Similarity=0.053  Sum_probs=110.1

Q ss_pred             HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-----CCchHH-HHHhHHHHHHHHHHHHHHHHhh
Q psy17628        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRPLL-LISDICMAICIGALGYYFYLLK  194 (338)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~  194 (338)
                      .......|.+.++.|+|..+.++.... .+...+ .++.|+++||+     |||+.+ +.+.+..+++...+++..   .
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---~   79 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---P   79 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---c
Confidence            345567788899999999998888654 444444 88999999998     898874 555555555544443320   0


Q ss_pred             cccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Q psy17628        195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-----  269 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  269 (338)
                            ....+.......+.+.+.+ ...+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+     
T Consensus        80 ------~~~l~~l~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~  152 (356)
T TIGR00901        80 ------STDLPLLAGLAFLIAFFSA-TQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL  152 (356)
T ss_pred             ------chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence                  0111222222223332322 2233333788999999999999999999999999999999888888777     


Q ss_pred             ---cceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        270 ---TGVAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       270 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                         |+..|++.+++.++..+..++..||++
T Consensus       153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       153 ITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence               888888777766665544444456643

>KOG0255|consensus

Probab=99.36  E-value=6.1e-12  Score=112.02  Aligned_cols=147  Identities=16%  Similarity=0.112  Sum_probs=113.9

Q ss_pred             ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHH
Q psy17628        134 TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI  213 (338)
Q Consensus       134 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (338)
                      ...+.....+..++..++..+|+++.|.++||+|||++++.+.++..++.++.++.            .+.....+..++
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a------------~~~~~~~~~Rfl  180 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA------------PNYWMFLIFRFL  180 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh------------CcHHHHHHHHHH
Confidence            34566677788999999999999999999999999999999999999998777765            223344444555


Q ss_pred             HHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhcc
Q psy17628        214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP  293 (338)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (338)
                      .+++.+ +.....+.++.|+++++.|+.+..+ ......++.+++...+++..  +|++.+++......+..++ +++.|
T Consensus       181 ~G~~~~-~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~  255 (521)
T KOG0255|consen  181 SGFFGS-GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPP  255 (521)
T ss_pred             HHhhcc-chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccC
Confidence            554444 4445555899999999999999999 88888888888888888877  7888888877777666544 55455


Q ss_pred             CCCC
Q psy17628        294 ETKN  297 (338)
Q Consensus       294 ~~~~  297 (338)
                      |+++
T Consensus       256 Es~r  259 (521)
T KOG0255|consen  256 ESPR  259 (521)
T ss_pred             cChH
Confidence            7643

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.36  E-value=3.2e-11  Score=103.99  Aligned_cols=185  Identities=18%  Similarity=0.225  Sum_probs=113.3

Q ss_pred             HHHhhhcchHHHHHhhHHHHHhc--cCCCCC----------cchhhHHHHHHHHHHHHHHHHhhhhcCC-chHHHHHhHH
Q psy17628        112 LCFLSFSGINVVIFYLKRILIAT--NSKIIS----------PNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDIC  178 (338)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~----------~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~  178 (338)
                      ..+..+.+++.+..|.+.+..+.  +-++.+          ..+.....++...+.+++..++.+|+|+ |++..++.++
T Consensus       266 vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~  345 (477)
T TIGR01301       266 VTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNII  345 (477)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            33334445777777777766542  222211          1233445556666777778889999985 6777888777


Q ss_pred             HHHHHHHHHHHHHHhhcc---c---c---hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch--hhhhHHHHHH
Q psy17628        179 MAICIGALGYYFYLLKLD---E---K---LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD--VKGLALGVIC  247 (338)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~---~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~  247 (338)
                      .++++....+.....++.   +   .   ......+..++.+.+.++..+. ...++++++++..|++  ..|..+|+.|
T Consensus       346 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN  424 (477)
T TIGR01301       346 LAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLN  424 (477)
T ss_pred             HHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHH
Confidence            777777665442211100   0   0   0000024444555555555543 3456778899988854  4499999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccc--eeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628        248 ILGSLIEFVVVKTFDDVERAFGTG--VAFGTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      .+..+...+.....+.+.+..|-+  ..+.+.++..++++++.++.+|+++.
T Consensus       425 ~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       425 LAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999998888888777766666633  34445556666777777787887653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG1330|consensus

Probab=99.36  E-value=6e-12  Score=104.29  Aligned_cols=229  Identities=13%  Similarity=0.085  Sum_probs=119.1

Q ss_pred             echhhhhhhcch-------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHH
Q psy17628          4 SGILYTYVIGSL-------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELD   76 (338)
Q Consensus         4 ~G~~~~~~i~~~-------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~   76 (338)
                      +|..+|+.++..       |||.|.+.   ++++++.+++.+++++|.+|     +..++..       +++..      
T Consensus       168 vGsglG~vvgs~va~~~~~Wr~af~~~---avl~vi~~~L~~~f~~eP~r-----ga~~~~~-------~~~~~------  226 (493)
T KOG1330|consen  168 VGSGLGYVVGSVVASLTFWWRWAFRGS---AVLGVIVGLLVFLFVREPER-----GARDEVD-------GENKM------  226 (493)
T ss_pred             cccceeEEeeeeeccCccceEEEEEee---hHHHHHHHHHHHhhccCccc-----ccccccc-------cCCcC------
Confidence            444555555444       99999999   99999999999999999764     1111110       00000      


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHH----HhccCCCCCcchhhHHHHHHH
Q psy17628         77 ELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRIL----IATNSKIISPNYGQNIVGFIQ  152 (338)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~  152 (338)
                           .........+.+.+.+++.+....+-.....+.     ...+..+.|.+.    .-.|++..+..++..+...++
T Consensus       227 -----~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G  296 (493)
T KOG1330|consen  227 -----VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGG  296 (493)
T ss_pred             -----CCCccchHHHHHHHHccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhc
Confidence                 000011112333344433222222222222221     223333444333    223667777778888899999


Q ss_pred             HHHHHHHHHhhhhcCCc----hHHHHHhHHHHHHHHHHHHH-HHHhhcccchhhhhchHHHHHHHHHHHhhcccccccce
Q psy17628        153 VIMTFFSSLLVDKAGRR----PLLLISDICMAICIGALGYY-FYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPG  227 (338)
Q Consensus       153 ~~~~~~~g~l~d~~grr----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                      .+|.+++|.++||+.|+    ....+..+..+.+....... +.....    .....+..++++.+........+.+.. 
T Consensus       297 ~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~----~~~s~~~~~il~~~g~~~~~~~~a~n~-  371 (493)
T KOG1330|consen  297 SLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF----TSSSMIFGLILFLVGETISWFNWATNN-  371 (493)
T ss_pred             hhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHhccccccc-
Confidence            99999999999994321    22222222222221111110 000000    011222222222222333344455555 


Q ss_pred             eeeeccCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q psy17628        228 VMMGELFTPDVKGLALGVICILGSL-IEFVVVKTFDDVERAF  268 (338)
Q Consensus       228 ~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  268 (338)
                      -+..|+.|++.|.+++++...+..+ |.+-.|++.|.+.++.
T Consensus       372 ~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  372 PIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             ceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence            5788999999999999998777555 4444555888777643

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.34  E-value=3.3e-11  Score=96.94  Aligned_cols=178  Identities=15%  Similarity=0.071  Sum_probs=118.7

Q ss_pred             HHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-CCchH
Q psy17628         93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPL  171 (338)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~  171 (338)
                      .+++++|.     .+...+++..+...+|....|+|.++.|.|+|..+++...+...+.+++.++....+++|. .+|+.
T Consensus       202 ~~vw~~~~-----aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~  276 (395)
T COG2807         202 RKVWRSPL-----AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPL  276 (395)
T ss_pred             cccccCch-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence            44667663     3333444444555588999999999999999999999999999999999999999999975 56666


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeecc-CCchhhhhHHHHHHHHH
Q psy17628        172 LLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL-FTPDVKGLALGVICILG  250 (338)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~~~~~~~~  250 (338)
                      .......+.++.+.+.+.  ..         ...+..  ..+++.+.+..+.... ..+.+- -.++..+.-.|+...++
T Consensus       277 ~~~~~~~~l~G~~G~~~~--P~---------~~~~lw--~~llG~G~G~~F~laL-~li~~rs~~a~~Aa~LSgmaQg~G  342 (395)
T COG2807         277 VVLALLLMLVGLVGLLLA--PG---------QLPILW--ALLLGLGQGGAFPLAL-TLILLRSSDAAIAAALSGMAQGVG  342 (395)
T ss_pred             HHHHHHHHHHHHHHHHHh--hh---------hHHHHH--HHHHhCccchHHHHHH-HHHHhhcCChHHHHHHHHHhhhhh
Confidence            666666666666655543  11         111111  2344444443333222 344443 34455677788889999


Q ss_pred             HHHHHHHHHHHHHHHHhcc-cceeehhhhHHHHHHHHHHH
Q psy17628        251 SLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVY  289 (338)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  289 (338)
                      ++...++|+++|.+.|.+| |......+..+.++..+..+
T Consensus       343 YllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         343 YLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             HHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999887 43344444444444443333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.34  E-value=1.7e-11  Score=105.23  Aligned_cols=163  Identities=12%  Similarity=0.018  Sum_probs=100.8

Q ss_pred             hHHHHHhhHHHH-HhccCCCCCcchhhHHHHH-HHHHHHHHHHHhhhhcCCchHHH-HHhHHHHHHHHHHHHHHHHhhcc
Q psy17628        120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAGRRPLLL-ISDICMAICIGALGYYFYLLKLD  196 (338)
Q Consensus       120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~  196 (338)
                      ......+.|.++ ++.|.+..+.++..+...+ +...+.+.+++ +||+|||+.++ .+.+...+...+..+.       
T Consensus        31 ~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~-------  102 (393)
T PRK15011         31 GALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN-------  102 (393)
T ss_pred             HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh-------
Confidence            344556666655 4569899998888765555 44555555666 99999998754 4444433444333332       


Q ss_pred             cchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceee
Q psy17628        197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK--GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAF  274 (338)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (338)
                           ...+..++...+.+...+ ...+....+..|..+++.|  +...++.+....++..++|.+.+.+.+..||+..|
T Consensus       103 -----~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f  176 (393)
T PRK15011        103 -----RNYFVLLFVGVFLSSFGS-TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMY  176 (393)
T ss_pred             -----hHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHH
Confidence                 111222222222232222 3333333455666555544  33446777788899999999999998889999988


Q ss_pred             hhhhHHHHHHHHHHHhhccCCC
Q psy17628        275 GTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      ++.+...++..+..+++.||.+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        177 LSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHHHHHHHhhcCccC
Confidence            8887777777666666677653

>KOG2504|consensus

Probab=99.34  E-value=1.1e-11  Score=108.12  Aligned_cols=180  Identities=13%  Similarity=0.065  Sum_probs=135.7

Q ss_pred             chHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHH
Q psy17628        101 TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~  180 (338)
                      +-|.+....++.........+.+..+.+.+.++.+.+..+.++..++......+..++.+.+.||+|.|.+.+.|.++..
T Consensus        43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~  122 (509)
T KOG2504|consen   43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA  122 (509)
T ss_pred             eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence            33334444444433333334455566777888888788889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q psy17628        181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKT  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~  260 (338)
                      +++++..+.           .+.....+..-.+.+.+.++.+.+.. +.+...|+ ++|+.++|+......+|.++.|.+
T Consensus       123 ~g~~lssF~-----------~~i~~l~lt~gvi~G~G~~~~~~pai-viv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l  189 (509)
T KOG2504|consen  123 LGLLLSSFA-----------TSLWQLYLTFGVIGGLGLGLIYLPAV-VILGTYFE-KKRALATGIAVSGTGVGTVVFPPL  189 (509)
T ss_pred             HHHHHHHHH-----------hhHHHHHHHHHHHhhccchhhhcchh-hhhhhHhH-HHHHHHHhhhhccCCcceeeHHHH
Confidence            998887775           11222333344455566666666666 56665554 679999999999999999999999


Q ss_pred             HHHHHHhcccceeehhhhHHHHHHHHHHHhhcc
Q psy17628        261 FDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP  293 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (338)
                      ...+.+.+||+..+++++.+.+-..+....+.|
T Consensus       190 ~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  190 LKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999988888766666665555

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.33  E-value=1.4e-11  Score=105.89  Aligned_cols=168  Identities=13%  Similarity=0.131  Sum_probs=103.2

Q ss_pred             chHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy17628        119 GINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE  197 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (338)
                      +......+.|.++++ .|.+..+.+...+...+...++.++.|+++||+|||+.++.+....++............... 
T Consensus        17 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-   95 (396)
T TIGR00882        17 IMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQ-   95 (396)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHH-
Confidence            355666677777765 599999999999999999999999999999999999999877665554433221110000000 


Q ss_pred             chhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhh
Q psy17628        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTF  277 (338)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (338)
                         ........+...+.+.+.+....... .+..|..  +.++...|.....+.+|..+++.+.+.+.+ .+|+..|++.
T Consensus        96 ---~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~  168 (396)
T TIGR00882        96 ---SNILVGAIVGGLYLGFVFSAGAGAIE-AYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLG  168 (396)
T ss_pred             ---HHHHHHHHHHHHHHHHHhccchhhHH-HHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHH
Confidence               00011112222233333333222222 3334432  233456677777788888889988876654 5888888877


Q ss_pred             hHHHHHHHHHHHhhccC
Q psy17628        278 AVYCIIGTFFVYFVVPE  294 (338)
Q Consensus       278 ~~~~~~~~~~~~~~~~~  294 (338)
                      +.+.++..++.+...++
T Consensus       169 ~~~~~~~~~~~~~~~~~  185 (396)
T TIGR00882       169 SGFALILMLLLMFAKPK  185 (396)
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            77776665554443333

>TIGR00896 CynX cyanate transporter

Probab=99.33  E-value=7.2e-12  Score=106.10  Aligned_cols=146  Identities=13%  Similarity=0.011  Sum_probs=106.4

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      +.......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.+...++.+.. ..          
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~----------   84 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA----------   84 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh----------
Confidence            3445667888999999999999999999999999999999999999999999998877766655443 21          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cceeehhh
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG--TGVAFGTF  277 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  277 (338)
                        .+.+..++...+.+.+.+....... .++.|.+| ++|++++++.+....++..+++.+.+.+.+..+  |+..+...
T Consensus        85 --~~~~~l~~~~~~~g~g~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~  160 (355)
T TIGR00896        85 --PGTALLFAGTALIGVGIAIINVLLP-SLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWW  160 (355)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHhccch-HHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence              1123333444444444443333333 56677776 579999999999999999899888887776543  66666555


Q ss_pred             hHH
Q psy17628        278 AVY  280 (338)
Q Consensus       278 ~~~  280 (338)
                      +++
T Consensus       161 ~~~  163 (355)
T TIGR00896       161 ALP  163 (355)
T ss_pred             HHH
Confidence            443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.33  E-value=5e-11  Score=102.54  Aligned_cols=131  Identities=12%  Similarity=-0.022  Sum_probs=86.5

Q ss_pred             HHHHhhHHHHHhcc--CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        122 VVIFYLKRILIATN--SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       122 ~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ....+.+.+.++.+  .+................+|.++++++.||+++|+++.+...+..+..++....          
T Consensus       250 ~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~----------  319 (410)
T TIGR00885       250 MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA----------  319 (410)
T ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc----------
Confidence            45567777776543  232333445555667788999999999999999999888777776665555442          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF  268 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (338)
                         ..........+.+++.+..+ |..++...+..+++.+..+.++....  +|+.+.|++.|.+.|..
T Consensus       320 ---~~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       320 ---GGHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             ---CChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence               11122344445555555555 44447788888876654444444433  89999999999999954

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.33  E-value=3e-10  Score=99.67  Aligned_cols=135  Identities=14%  Similarity=0.072  Sum_probs=81.4

Q ss_pred             hHHHHHhhHHHHHhc-cCCC---CCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHH-HHHhHHHHHHHHHHHHHHHHhh
Q psy17628        120 INVVIFYLKRILIAT-NSKI---ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLL-LISDICMAICIGALGYYFYLLK  194 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~  194 (338)
                      ++....+.|...... +-+.   ...++.....+++..++.++.|.+..+++|-|.. +++..++.+++.+++.. ..  
T Consensus       326 ~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~-~~--  402 (599)
T PF06609_consen  326 FFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV-RP--  402 (599)
T ss_pred             HHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc-cC--
Confidence            444444555544433 4333   2567778888889999999999999988876655 45555554443333322 11  


Q ss_pred             cccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE  265 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (338)
                             ++....+....+.+++.+....+.. ....-..|++.-|++.|+...+..+|+.++..++..+.
T Consensus       403 -------~n~~~~i~~~~l~g~giG~~~~~~~-~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  403 -------DNKNAAIAFLVLAGFGIGGILVPAI-VIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             -------CCcchHHHHHHHHHHhHHHHHHHHH-HeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                   1111223333344444443333333 44555678899999999999999998888877665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.32  E-value=2.6e-11  Score=106.71  Aligned_cols=165  Identities=14%  Similarity=0.099  Sum_probs=112.4

Q ss_pred             chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-----CCchH-HHHHhHHHHHHHHHHHHHHHH
Q psy17628        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRPL-LLISDICMAICIGALGYYFYL  192 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~-~~~~~~~~~~~~~~~~~~~~~  192 (338)
                      .........|.++++.|.+..+.+....+. .. .++.+++|+++||+     |||+. +..+.+..+++...+++..  
T Consensus        27 ~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~-~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~--  102 (491)
T PRK11010         27 PLALTSGTLQAWMTVENIDLKTIGFFSLVG-QA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE--  102 (491)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC--
Confidence            355666778888888888887777753222 22 26889999999999     99985 5566666656655554420  


Q ss_pred             hhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcccc
Q psy17628        193 LKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-AFGTG  271 (338)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  271 (338)
                             ...+.+.......+.+++.+. ..+...++..|.+|+++|+++.++......+|..+++.+...+.+ ..||+
T Consensus       103 -------~~~~l~~l~~~~~l~~~~~a~-~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr  174 (491)
T PRK11010        103 -------PGTQLRWLAALAVVIAFCSAS-QDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQ  174 (491)
T ss_pred             -------CcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence                   011122333333344444443 333334789999999999999999999999999999988888888 46999


Q ss_pred             eeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        272 VAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      ..|++.+++.++..+..+ +.||+.
T Consensus       175 ~~f~i~a~l~ll~~l~~~-~~~e~~  198 (491)
T PRK11010        175 GMYWLMAALLIPCIIATL-LAPEPT  198 (491)
T ss_pred             HHHHHHHHHHHHHHHHHH-hcCCCc
Confidence            999888877666654433 467753

>TIGR00788 fbt folate/biopterin transporter

Probab=99.32  E-value=1.2e-11  Score=108.06  Aligned_cols=134  Identities=8%  Similarity=-0.058  Sum_probs=99.2

Q ss_pred             hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHH
Q psy17628        133 ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA  212 (338)
Q Consensus       133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (338)
                      ..|+++.+.+......+++.+++..+.+++.+|++.|+++.++.++.+++...........+..  ......+.......
T Consensus       282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~--~gi~~~~~~~~~~~  359 (468)
T TIGR00788       282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLA--FGISDEVFVLGDSI  359 (468)
T ss_pred             cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccc--cCCCCeeeeeehhH
Confidence            4699999999999999999999999999999999999999998888877664432111000000  00011122233334


Q ss_pred             HHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628        213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG  269 (338)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (338)
                      +...+.+..+.+.. .++.+..|++.+|+.+++.+.+.+++..+++.+.+.+.+..|
T Consensus       360 l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       360 IAEVLAQLKFMPFL-VLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHccHH-HHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44555556666665 789999999999999999999999999999988888888777

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11462 putative transporter; Provisional

Probab=99.31  E-value=1e-10  Score=102.15  Aligned_cols=119  Identities=11%  Similarity=-0.039  Sum_probs=71.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcc
Q psy17628        141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV  220 (338)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                      .+.......+..+++.+++++++||+|+|+.+..+..+..+..+++.+.   ..       ......++...+.+.+. .
T Consensus       265 ~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~l~g~~~-~  333 (460)
T PRK11462        265 FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV---PM-------QASITMFVFIFVIGVLH-Q  333 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---ch-------hHHHHHHHHHHHHHHHH-H
Confidence            3455667778888999999999999999988765554443333222211   00       01112222223333333 2


Q ss_pred             cccccceeeeeccCC-----chhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628        221 GFGPIPGVMMGELFT-----PDVK--GLALGVICILGSLIEFVVVKTFDDVERAFGT  270 (338)
Q Consensus       221 ~~~~~~~~~~~e~~p-----~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (338)
                      ...+..+++++|..+     +..|  |...+...+...++..+++.+.+.+++..|+
T Consensus       334 ~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        334 LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            233444466676655     2234  5555666688899999999998888876665

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.29  E-value=6.1e-11  Score=115.39  Aligned_cols=144  Identities=15%  Similarity=0.042  Sum_probs=96.6

Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcc
Q psy17628        141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV  220 (338)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                      .++..++..+..++.++++|+++||+|||+++........+...........         .+.+..+++.++.+.+.+.
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~---------~s~~~l~~~~~l~gi~~a~  124 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL---------NSVPLLFAALFLMGIHSAL  124 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHh
Confidence            4566667788889999999999999999997644222222222111111110         1233444555555554443


Q ss_pred             cccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCC
Q psy17628        221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (338)
                       ..+...+++.|++|++.|+.++|+.++...++..++|.+.+.+....+|+..| +..++..+..++..+.++++
T Consensus       125 -~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        125 -FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             -hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCC
Confidence             44555589999999999999999999999999999999999999988887776 33333333344444556654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.28  E-value=8.4e-11  Score=114.70  Aligned_cols=117  Identities=13%  Similarity=0.065  Sum_probs=86.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcc
Q psy17628        141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV  220 (338)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                      .++..++..++.+++++++|+++||+|||++++.+.++.++..++..+....         ...+..++..++.+++.+.
T Consensus        49 ~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~~~  119 (1146)
T PRK08633         49 TAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL---------GWFWLAFAVTFLLGAQSAI  119 (1146)
T ss_pred             HHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH---------ccHHHHHHHHHHHHHHHHh
Confidence            4667778888899999999999999999999998877665555544332111         1223444444555555444


Q ss_pred             cccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628        221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA  267 (338)
Q Consensus       221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (338)
                      . .+...++++|++|++.|+.++|+......+|..+++.+.+.+.+.
T Consensus       120 ~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        120 Y-SPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             h-chHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3 344448999999999999999999999999999999998888765

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.27  E-value=9.6e-11  Score=95.73  Aligned_cols=174  Identities=12%  Similarity=0.087  Sum_probs=117.6

Q ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc
Q psy17628         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (338)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr  169 (338)
                      ...+++++|+.+.-. +..++...    .-.....+++.++.+ .|.+..+.....+....+.++|.+++.++..|+...
T Consensus       228 ~~~~l~~~~~~~~gv-l~~FlYVG----~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~  302 (422)
T COG0738         228 GLSSLFQNKHLRLGV-LAIFLYVG----AEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE  302 (422)
T ss_pred             hHHHHHhChHHHHHH-HHHHHHHh----HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            467788887433322 22222222    234567788888888 588999999999999999999999999999999999


Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHH
Q psy17628        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL  249 (338)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  249 (338)
                      +.+.+..++..+.++...+.             +..+.+....+.+.+.+..+..+. +...+..|.+  ....|.....
T Consensus       303 k~Laf~a~~~ill~~~~~l~-------------~g~v~~~~l~~ig~F~simfPTIf-slal~~l~~~--ts~~s~~l~m  366 (422)
T COG0738         303 KYLAFYALIAILLLLAVALI-------------GGVVALYALFLIGLFNSIMFPTIF-SLALKNLGEH--TSVGSGLLVM  366 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-------------cChHHHHHHHHHHHHhHHHHHHHH-HHHHhccCcc--ccccceeeee
Confidence            98888766665555555443             223444455556666665555444 7777778733  2333444555


Q ss_pred             HHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHH
Q psy17628        250 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT  285 (338)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (338)
                      ..+|+++.|++.|++.|..|....+.....+|.+..
T Consensus       367 aivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         367 AIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             heecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            667889999999999999887665554444444443

>KOG0254|consensus

Probab=99.26  E-value=3.9e-11  Score=106.43  Aligned_cols=142  Identities=12%  Similarity=0.130  Sum_probs=113.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcc
Q psy17628        141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV  220 (338)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                      .+++.+...++..+++++.|+++|++|||+.++.+.+...++.++.+..            .+....++...+.+++.+.
T Consensus        91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a------------~~~~~l~~GR~l~G~g~G~  158 (513)
T KOG0254|consen   91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA------------PSWYQLIVGRILTGLGVGG  158 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHhccchhh
Confidence            3799999999999999999999999999999999999999999988876            2345666777788877777


Q ss_pred             cccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628        221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF--GTGVAFGTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      .....+ .+.+|+.|++.||...+.......+|..++ .+.+....+.  +||..+.+..+.+++..+. .+++||+.+
T Consensus       159 ~~~~~p-iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~  234 (513)
T KOG0254|consen  159 ASVLAP-VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPR  234 (513)
T ss_pred             hhhcch-hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence            776666 899999999999999998888777665555 6666555543  7887776666666666655 777888743

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.25  E-value=7.8e-11  Score=103.30  Aligned_cols=154  Identities=16%  Similarity=0.116  Sum_probs=111.6

Q ss_pred             HHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhh
Q psy17628        124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL  203 (338)
Q Consensus       124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (338)
                      ..-.+.+..+..-|+...++......+-.++.++++|.++||+.||++++.+-++.++....+.+......       .+
T Consensus        30 ~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~-------~~  102 (524)
T PF05977_consen   30 TVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGL-------LS  102 (524)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCc-------CC
Confidence            33344444455447777888888888999999999999999999999999998887776665554422221       12


Q ss_pred             chHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHH
Q psy17628        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCII  283 (338)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (338)
                      .+..+++.++.+.+.+. ..|...+.+.|+.|+++...++++.....++...++|.+.|.++...|....|.+-++..++
T Consensus       103 ~~~Ll~~~fl~g~~~a~-~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~  181 (524)
T PF05977_consen  103 PWLLLILTFLLGIGSAF-FNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLI  181 (524)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23344444444444443 34444488999999999999999999999999999999999998888877777766555444


Q ss_pred             HH
Q psy17628        284 GT  285 (338)
Q Consensus       284 ~~  285 (338)
                      ..
T Consensus       182 ~i  183 (524)
T PF05977_consen  182 SI  183 (524)
T ss_pred             HH
Confidence            43

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.24  E-value=1.3e-10  Score=99.76  Aligned_cols=140  Identities=16%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceee
Q psy17628        150 FIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVM  229 (338)
Q Consensus       150 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (338)
                      +...+++++.|+++||+|||+.+..+.++..++.+++..........    .......++...+.+.+.+....... .+
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~-~~  120 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIG----IWAPILLLLARLIQGFSLGGEWGGAA-LY  120 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhH----HHHHHHHHHHHHHHHhhccccccccH-HH
Confidence            34456889999999999999999999988888877666541110000    00001233334444444443333344 78


Q ss_pred             eeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhcccceeehhhhHHHHHHHHHHHhhccCC
Q psy17628        230 MGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE--------RAFGTGVAFGTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       230 ~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (338)
                      +.|.+|+++|+...++......+|..+++.+...+.        +..+|+..+.+.+.+.++.. +.....+|+
T Consensus       121 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~  193 (394)
T TIGR00883       121 LAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL-YLRRNLEET  193 (394)
T ss_pred             hhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH-HHHHhcCCC
Confidence            999999999999999988888888888777655432        34678777766554444333 223334543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.24  E-value=1e-10  Score=100.05  Aligned_cols=148  Identities=14%  Similarity=0.118  Sum_probs=101.4

Q ss_pred             chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHH-HHHHHHHHHHHHhhccc
Q psy17628        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA-ICIGALGYYFYLLKLDE  197 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  197 (338)
                      +......++|.++++.|++..+.++..+...+...+++++.|.++||+||+........... +..+.+...        
T Consensus        19 ~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~--------   90 (382)
T TIGR00902        19 AYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAG--------   90 (382)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            35567788899999999999999999999999999999999999999998644322211111 111111100        


Q ss_pred             chhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhh
Q psy17628        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTF  277 (338)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (338)
                         .++.+..++...+.+.+.+.. .+...++..+.  .++|+..+|.....+.+|..++|.+.+.+.+..||+..+.+.
T Consensus        91 ---~~~~~~l~~~~~l~~~~~~~~-~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        91 ---AHNAWLLFIAIGLFALFFSAG-MPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             ---hhhHHHHHHHHHHHHHHHccc-hhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence               112233334444444444433 33333444442  467899999999999999999999999999999999887765


Q ss_pred             hHH
Q psy17628        278 AVY  280 (338)
Q Consensus       278 ~~~  280 (338)
                      ..+
T Consensus       165 ~~~  167 (382)
T TIGR00902       165 TAG  167 (382)
T ss_pred             HHH
Confidence            544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG2533|consensus

Probab=99.23  E-value=1.1e-10  Score=100.89  Aligned_cols=153  Identities=16%  Similarity=0.031  Sum_probs=118.0

Q ss_pred             HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHH
Q psy17628        132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL  211 (338)
Q Consensus       132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (338)
                      ++.+....+.+...+++.++.+++.++++.+.||++-.+.+....++.++..++....            .+.+..++..
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~------------~s~~~~ialr  141 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV------------HSFPGLIALR  141 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHH
Confidence            4456677788999999999999999999999999995555444433333333222221            1234556667


Q ss_pred             HHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HhcccceeehhhhHHHHHHH
Q psy17628        212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE------RAFGTGVAFGTFAVYCIIGT  285 (338)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  285 (338)
                      ++.+.+-+.++.+.. .+++.++.++.|++-+|+.+....+|+++++.+...+.      ...||++.|++-+++.++..
T Consensus       142 ~llGl~es~~wP~~~-~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~g  220 (495)
T KOG2533|consen  142 FLLGLFESGGWPGVV-AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLG  220 (495)
T ss_pred             HHHHHHhcccchHHH-HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHH
Confidence            777777777777776 79999999999999999999999999988888776642      35789999999999999999


Q ss_pred             HHHHhhccCCCC
Q psy17628        286 FFVYFVVPETKN  297 (338)
Q Consensus       286 ~~~~~~~~~~~~  297 (338)
                      +++++++|+...
T Consensus       221 i~~f~~lp~~P~  232 (495)
T KOG2533|consen  221 IVVFFFLPDNPS  232 (495)
T ss_pred             heEEEEecCChh
Confidence            999998987544

>KOG4686|consensus

Probab=99.23  E-value=1.4e-10  Score=90.12  Aligned_cols=136  Identities=14%  Similarity=0.015  Sum_probs=99.4

Q ss_pred             hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      +..+....|.++++. |+|+..++.+.+.....+.+.+++.|.++||+|++...+.+..+..+..-....+         
T Consensus       280 ~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F---------  350 (459)
T KOG4686|consen  280 WFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF---------  350 (459)
T ss_pred             HHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh---------
Confidence            556666777777765 9999999999999999999999999999999999988877655544433222221         


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG  269 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (338)
                          ..+...+.+.+.+..++.. ....|..++.+.|+++-|++.|.+..+.++|-.+.|.+.+.+.++.|
T Consensus       351 ----t~lsPy~~m~~lGLsysll-AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  351 ----TFLSPYTSMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             ----hhccHHHHHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence                0111233334444333322 22345667778899999999999999999999999999999988766

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.20  E-value=5.7e-11  Score=103.64  Aligned_cols=169  Identities=14%  Similarity=0.067  Sum_probs=108.7

Q ss_pred             HHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh----cCCch-HHHHHhHHHHHHHHHHHHHHHHhh
Q psy17628        121 NVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRP-LLLISDICMAICIGALGYYFYLLK  194 (338)
Q Consensus       121 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~~~~~~~~~~~~~~  194 (338)
                      .....|++.++.+ .|.++.+.+...++..+...+..++.|+++||    +|||+ .++.+....+++.+++....   +
T Consensus        16 ~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~---~   92 (437)
T TIGR00792        16 AIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP---D   92 (437)
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC---C
Confidence            3445556665554 59999999999999999999999999999997    67755 56666666666655443321   0


Q ss_pred             cccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy17628        195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTFDDVER-------  266 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  266 (338)
                      ..   .........+...++..+.+....+.. ++.+|.. ++++|++..++......+|+.+++.+.+.+..       
T Consensus        93 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~  168 (437)
T TIGR00792        93 FS---ATGKLVYAYITYILLGLFYSFVNIPYW-SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDD  168 (437)
T ss_pred             CC---cchHHHHHHHHHHHHHHHHHhhcccHh-hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            00   001112223333344444444333443 6777876 56889999998888887877766665555443       


Q ss_pred             hcccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        267 AFGTGVAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      ..+|+..+.+.+++..+..++.++..||++
T Consensus       169 ~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       169 KFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            346766777777777666666666666653

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.19  E-value=2.5e-10  Score=97.67  Aligned_cols=161  Identities=10%  Similarity=0.035  Sum_probs=103.7

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhH-HHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI-CMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ......++|.++++.|.|..+.+...+...+...+++++.|.++||+|||....-... ...+...  ...  ..     
T Consensus        20 ~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~--~~~--~~-----   90 (382)
T PRK11128         20 YGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV--AFW--FG-----   90 (382)
T ss_pred             HHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH--HHH--Hh-----
Confidence            4567778889999999999999999999999999999999999999999532211111 1111111  111  00     


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                        .++.+..++...+.+.+.+.. .+...++..+.  .+.|+.+.+.....+.++..++|.+.+.+.+.+||+..+++.+
T Consensus        91 --~~~~~~l~i~~~l~g~~~~~~-~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~  165 (382)
T PRK11128         91 --AHSFWLLFVAIGLFNLFFSPL-VPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILT  165 (382)
T ss_pred             --cccHHHHHHHHHHHHHHHccc-ccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence              112233333334444443333 33332444544  3557888888888899999999999999999999998887666


Q ss_pred             HHHHHHHHHHHhhccCC
Q psy17628        279 VYCIIGTFFVYFVVPET  295 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~  295 (338)
                      +..++.. +..+..||.
T Consensus       166 ~~~~~~~-~~~~~~~~~  181 (382)
T PRK11128        166 AGVASML-LGQLLRPTI  181 (382)
T ss_pred             HHHHHHH-HHHHccCCC
Confidence            5443333 333334443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.19  E-value=1.5e-13  Score=120.35  Aligned_cols=146  Identities=14%  Similarity=0.147  Sum_probs=104.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcc
Q psy17628        141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV  220 (338)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                      .++..+...++..+|++++|+++||+|||+.+..+..+..++.++..+....         .+.+...+...+.+++.+.
T Consensus        48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~---------~~~~~~~~~R~~~G~~~g~  118 (451)
T PF00083_consen   48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY---------NNFWMLLIGRFLIGFGIGG  118 (451)
T ss_pred             HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc---------ccccccccccccccccccc
Confidence            4567888899999999999999999999999999999998888877765110         1334555556666666665


Q ss_pred             cccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HhcccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628        221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE---RAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      ...... .++.|..|++.|+...++......+|..++..+.....   +..+|+..+.+..+..++.. +..+++||+.+
T Consensus       119 ~~~~~~-~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~-~~~~~~pESP~  196 (451)
T PF00083_consen  119 AYVVSP-IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVL-LLRFFLPESPR  196 (451)
T ss_pred             cccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            555555 89999999999999988877777666555544432222   22348777766666655544 44466899743

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252|consensus

Probab=99.15  E-value=4.2e-10  Score=93.37  Aligned_cols=108  Identities=16%  Similarity=0.054  Sum_probs=76.5

Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHH
Q psy17628        136 SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYI  215 (338)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (338)
                      ++....+.+.....++.++|+++.|++.||+|||+++...++++.++.++++........     .....+......+++
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~-----~~~m~~L~~~R~~LG  155 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSP-----LGVMMTLCFFRFLLG  155 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCC-----cchhhHHHHHHHHhh
Confidence            344455677888899999999999999999999999999999999998855543111111     122334444455666


Q ss_pred             HhhcccccccceeeeeccCCchhhhhHHHHHHHH
Q psy17628        216 IVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL  249 (338)
Q Consensus       216 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  249 (338)
                      ++.+. -.|+..+.++|....+.||+-.+.....
T Consensus       156 iGIGG-DYPlSAtI~SE~an~~~RGa~iaavFa~  188 (538)
T KOG0252|consen  156 IGIGG-DYPLSATIMSESANKKTRGAFIAAVFAM  188 (538)
T ss_pred             ccccC-CCcchHHHhhhhhhhccccceeEEEEEe
Confidence            66554 4555558999999999999887764333

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.15  E-value=6.9e-11  Score=99.36  Aligned_cols=181  Identities=17%  Similarity=0.117  Sum_probs=124.3

Q ss_pred             HHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHH-HHhcc----CCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCC
Q psy17628         95 IYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIATN----SKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGR  168 (338)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr  168 (338)
                      .+++|   +.+..++..-+.-.++ +|++...+..| ..+.+    ++.+++......+....-+..+++||++|| +|+
T Consensus        16 ~f~~P---r~l~~if~vE~WERFs-yYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~   91 (498)
T COG3104          16 FFGQP---RGLYLIFFVELWERFS-YYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGT   91 (498)
T ss_pred             cCCCC---chHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            44444   3455555555555554 33333333333 33334    888888777777777777888999999999 599


Q ss_pred             chHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchh--hhhHHHHH
Q psy17628        169 RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVI  246 (338)
Q Consensus       169 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~  246 (338)
                      |+.++.+.++++++.++++...          ........+.+.+...+.+..=.... +++.|++|++.  |-.+.++.
T Consensus        92 ~~tI~lGail~~iGh~~L~~~~----------~~~~~gl~i~L~~I~iG~Gl~K~NiS-~llg~ly~~~DprrD~gFt~f  160 (498)
T COG3104          92 RRTIVLGAILMAIGHLVLAISS----------VSGPGGLYIGLALIIVGTGLFKPNIS-SLLGELYPKDDPRRDGGFTLF  160 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHhccc----------cccccHHHHHHHHHHhccccccccHH-HHHHHhcCCCCcccCCCccEE
Confidence            9999999999999998887641          01223334444444455544434444 78899987643  66778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHh
Q psy17628        247 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF  290 (338)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (338)
                      ++..++|+.+.|.+.+++.+.+||...|...++-..++.+..+.
T Consensus       161 Y~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~  204 (498)
T COG3104         161 YMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL  204 (498)
T ss_pred             EEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999988887776666655544433

>KOG2563|consensus

Probab=99.13  E-value=2.4e-09  Score=88.92  Aligned_cols=188  Identities=16%  Similarity=0.233  Sum_probs=111.3

Q ss_pred             hhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCC
Q psy17628         89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR  168 (338)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr  168 (338)
                      ..+.++.++++.     ++...+.+......++...+.+...+...|++...+|.......+++++++.+.|.+.||.+.
T Consensus       256 ~~si~~~~~n~~-----F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~  330 (480)
T KOG2563|consen  256 PKSIKSCFKNRQ-----FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKK  330 (480)
T ss_pred             HHHHHHHHcCcc-----HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            346777888763     222222222222223344444443444457777889999999999999999999999999876


Q ss_pred             chHH-HHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHH
Q psy17628        169 RPLL-LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVIC  247 (338)
Q Consensus       169 r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  247 (338)
                      -+.. ++......++. ++.......       ....++......+++ .+..+..|+..-+..|..-+..-++..|+.+
T Consensus       331 fk~~~~v~~~~~~v~~-~~l~~~t~~-------~~~~viv~~t~~~~g-~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~  401 (480)
T KOG2563|consen  331 FKLTTLVLYLFALVGT-LMLLTCTLF-------LGDSVIVFTTCGLLG-FFGTGYLPIGFELGVETTYPVAEGTSSGLLN  401 (480)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHhhcc-------CCceEehhhhHHHHH-HhhcCCCCcceeeeeeeccccCCcccceeEE
Confidence            5443 33333333331 222211111       112333333333343 4445666777788888865566788889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcc---cceeehh-hhHHHHHHHHHHHh
Q psy17628        248 ILGSLIEFVVVKTFDDVERAFG---TGVAFGT-FAVYCIIGTFFVYF  290 (338)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~  290 (338)
                      ..+++-+.+...+.+...+..+   |..+..+ ....+.+..++..+
T Consensus       402 ~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~  448 (480)
T KOG2563|consen  402 LSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAF  448 (480)
T ss_pred             eehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhh
Confidence            9999988888888888777665   2333333 44444444444444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.10  E-value=1.2e-09  Score=93.70  Aligned_cols=175  Identities=15%  Similarity=0.052  Sum_probs=109.8

Q ss_pred             HHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhh--HHHHHHHHHHHHHH-HHhhhhcCCchHHHHHhHHHHH-HHHHH
Q psy17628        111 LLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQ--NIVGFIQVIMTFFS-SLLVDKAGRRPLLLISDICMAI-CIGAL  186 (338)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~-g~l~d~~grr~~~~~~~~~~~~-~~~~~  186 (338)
                      ..++.+...+.....+.|.++++.|.+..+.+...  ....+...+.+++. ++.+||+|||+..++...+... +...+
T Consensus         8 ~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~   87 (390)
T TIGR02718         8 LLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASL   87 (390)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHH
Confidence            33444555567788899999999999999999863  56677787777777 5579999999987655433222 22222


Q ss_pred             HHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        187 GYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER  266 (338)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (338)
                      ...  ...      .....+.+........+ .....+..-.+..|..+++.++...+.......+|..+++...+.+.+
T Consensus        88 ~~~--~~~------~~~~~~~~~~~~~~~~~-~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~  158 (390)
T TIGR02718        88 ALV--GPD------VAGAGWAVGLLACASLA-SATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG  158 (390)
T ss_pred             HcC--Ccc------hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211  000      01111222222222222 222222222456677777777777777777778888888888888889


Q ss_pred             hcccceeehhhhHHHHHHHHHHHhhccC
Q psy17628        267 AFGTGVAFGTFAVYCIIGTFFVYFVVPE  294 (338)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (338)
                      ..||+..|++.+++.++..+..++..++
T Consensus       159 ~~gw~~~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       159 KFGQRPAFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999988888777666555443333

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.10  E-value=5e-10  Score=87.86  Aligned_cols=165  Identities=13%  Similarity=0.029  Sum_probs=109.2

Q ss_pred             chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ..+.+..|.|.+.+..|++..+.+.+.....++..+ .++.|.+.|++|.+.++.+|.+...++..++........    
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i----   91 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI----   91 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc----
Confidence            356788999999999999999999999999999876 488999999999999999999998888877655432211    


Q ss_pred             hhhhhchHHHHHHHHHHHhhccccc-ccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFG-PIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTF  277 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (338)
                        ...+.+.+..... ..+.+..+. ........+.||. .||++.|+.-....+++.+...+...+.+. +....+.+.
T Consensus        92 --~~~~~~~~~~~~~-l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~l  166 (250)
T PF06813_consen   92 --PSLPVWLMCLFLF-LGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFL  166 (250)
T ss_pred             --CccchHHHHHHHH-HHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHH
Confidence              1122222222222 222222221 2211334577885 799999999999999988888877666544 222233344


Q ss_pred             hHHHHHHHHHHHhhcc
Q psy17628        278 AVYCIIGTFFVYFVVP  293 (338)
Q Consensus       278 ~~~~~~~~~~~~~~~~  293 (338)
                      +....+..++..++++
T Consensus       167 a~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  167 AVLPAVVCLVAMFFVR  182 (250)
T ss_pred             HHHHHHHHHHHhhhee
Confidence            4444444444444443

>PRK09669 putative symporter YagG; Provisional

Probab=99.03  E-value=4.5e-10  Score=98.08  Aligned_cols=168  Identities=14%  Similarity=0.116  Sum_probs=102.0

Q ss_pred             HHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhh----cCCch-HHHHHhHHHHHHHHHHHHHHHHhh
Q psy17628        121 NVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRP-LLLISDICMAICIGALGYYFYLLK  194 (338)
Q Consensus       121 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~~~~~~~~~~~~~~  194 (338)
                      .....|++.++.+. |++....+....+.-+...+..++.|+++||    +|||+ .++.+.+..+++.+++...   ..
T Consensus        26 ~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~---p~  102 (444)
T PRK09669         26 QTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT---PD  102 (444)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC---CC
Confidence            34455666666654 9999999999999999999999999999998    67754 4555656655555433221   10


Q ss_pred             cccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------
Q psy17628        195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTFDDVERA------  267 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  267 (338)
                      ..   ......+..+...++..+++....|.. ++.+|+. ++++|.+..+.......+|+.+++.+...+...      
T Consensus       103 ~~---~~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~  178 (444)
T PRK09669        103 FG---ATGKIIYACVTYILLSLVYTAINVPYC-AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDE  178 (444)
T ss_pred             CC---cchHHHHHHHHHHHHHHHHHhhcchHH-HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence            00   011122333333344444444444444 6788887 557899888887777777777766554444332      


Q ss_pred             -cccceeehhhhHHHHHHHHHHHhhccCC
Q psy17628        268 -FGTGVAFGTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       268 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (338)
                       .+|+..+.+++++..+..+++++..+|.
T Consensus       179 ~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        179 QKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence             2344445555555555554455544543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.97  E-value=6.6e-08  Score=84.96  Aligned_cols=148  Identities=10%  Similarity=0.013  Sum_probs=92.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHH----hhhh-cCCchHH--HHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHH
Q psy17628        141 PNYGQNIVGFIQVIMTFFSSL----LVDK-AGRRPLL--LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI  213 (338)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~----l~d~-~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (338)
                      .+++.++..+.-++..++..+    +.|| .+.+...  .+|.++.+++...+++.....+.+   ...+.++.+....+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~---~~~s~~~~i~~~~~  390 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAG---GLTSPWFMVLIYLF  390 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CccCHHHHHHHHHH
Confidence            456777777777777766554    4443 2223333  567777777766655432111110   11234445555555


Q ss_pred             HHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhc
Q psy17628        214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV  292 (338)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (338)
                      .+.+-... .+...+++.+..|++.||+.+|+......+|..+++.+.....+..++...+...+.+.+++.++.++..
T Consensus       391 ~~~ge~~~-~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       391 QTLGELMI-SPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            55554443 4444488999999999999999999999999988888877666665666666666666666655555433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.96  E-value=2.9e-09  Score=93.68  Aligned_cols=138  Identities=12%  Similarity=0.093  Sum_probs=89.1

Q ss_pred             hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhh----hcCC-chHHHHHhHHHHHHHHHHHHHHHHh
Q psy17628        120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVD----KAGR-RPLLLISDICMAICIGALGYYFYLL  193 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~  193 (338)
                      ......|++.++++. |++....+.+..+.-+...+..++.|+++|    |+|| |+.++.+....+++..++...   .
T Consensus        22 ~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~---p   98 (473)
T PRK10429         22 IGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA---H   98 (473)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC---C
Confidence            445566777777776 999999999999999999999999999999    5698 455556666665554443221   1


Q ss_pred             hcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTFDDV  264 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  264 (338)
                      +..   ......+..+...++..+++....+.. ++.+|+. ++++|....+.....+.+++.+.+.+...+
T Consensus        99 ~~~---~~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~  166 (473)
T PRK10429         99 LFE---GTAQYVFVCVTYILWGMTYTIMDIPFW-SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF  166 (473)
T ss_pred             CCC---ccHHHHHHHHHHHHHHHHHHHHcchHH-hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000   000112233333344445555444554 7788987 588899988886676777666655544433

>KOG3764|consensus

Probab=98.96  E-value=1.2e-09  Score=89.15  Aligned_cols=237  Identities=13%  Similarity=0.033  Sum_probs=139.3

Q ss_pred             Cceechhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHH
Q psy17628          1 MVVSGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGE   74 (338)
Q Consensus         1 ~~~~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~   74 (338)
                      |.++|.++++..|++      -+..|++.   +++.++-..+.++.++.+..      +.                    
T Consensus       204 fislG~lvgPpfGGilYe~~Gk~aPFlVL---~~v~Lld~~L~l~vi~p~~~------~~--------------------  254 (464)
T KOG3764|consen  204 FISLGVLVGPPFGGILYEFAGKSAPFLVL---AIVLLLDGALQLLVIEPTEM------DP--------------------  254 (464)
T ss_pred             HHhccceecCCcccchHhhcCCcCcHHHH---HHHHHHHHHHHHheeCcccc------Cc--------------------
Confidence            356788888888887      89999999   88888766655555554321      00                    


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHH-HHhccCCCCCcchhhHHHHHHHH
Q psy17628         75 LDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIATNSKIISPNYGQNIVGFIQV  153 (338)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~  153 (338)
                               +...+..++++++++|..+   .....+.+  ...+....-..++.+ .+++..+.-+.++......+...
T Consensus       255 ---------~~~~~~~~~~~Ll~dP~I~---~~agai~~--~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~  320 (464)
T KOG3764|consen  255 ---------DSTEQGTPMWSLLMDPYIL---LIAGAITF--SNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYA  320 (464)
T ss_pred             ---------cccccCccHHHHHhCchHh---hhhcchhh--ccchHHHhCcccHHHHHHhccCCCcceeeeecccccchh
Confidence                     0122345678888887321   11111111  111122222333333 33445344488888999999999


Q ss_pred             HHHHHHHHhhhhcCCchHH--HHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeee
Q psy17628        154 IMTFFSSLLVDKAGRRPLL--LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMG  231 (338)
Q Consensus       154 ~~~~~~g~l~d~~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      +++.+.|.++||++..+.+  ..+.+..+.++....+.   ..      -...+.......+.+........|.. .++.
T Consensus       321 ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~---~~------~~~L~vp~~~l~~~i~~~dasl~P~l-~~lv  390 (464)
T KOG3764|consen  321 IGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA---TS------IAQLWVPNFGLGFGIGLADASLIPTL-GYLV  390 (464)
T ss_pred             ccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh---hh------HHHHhhhhHHHHHHHHHHHHHHhhhh-HHhc
Confidence            9999999999999944433  33333333333222222   10      00112222222222222222333333 3444


Q ss_pred             ccCCch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHh
Q psy17628        232 ELFTPD---VKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF  290 (338)
Q Consensus       232 e~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (338)
                      |.--.+   .-|...++......++.+++|.+.+.+.+..|+.|...+.++..++-+-++.+
T Consensus       391 d~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  391 DPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL  452 (464)
T ss_pred             chhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            443333   55788888888889999999999999999999988877777777666654443

>KOG3762|consensus

Probab=98.95  E-value=4.9e-09  Score=88.84  Aligned_cols=157  Identities=15%  Similarity=0.150  Sum_probs=119.8

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ...+.+++--.+++.|-.+...+........+.++.-++.+++.+|+|+-+++..++.+..+-.+.....          
T Consensus       387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L----------  456 (618)
T KOG3762|consen  387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL----------  456 (618)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh----------
Confidence            3344455545567777666667777778888889999999999999999999999887777665544443          


Q ss_pred             hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL-GSLIEFVVVKTFDDVERAFGTGVAFGTFA  278 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                        ++.|..+.+-.+-+...+..|..+. +|++...|++.|+++.++.... ..+|-.++..+.|.+...++-+..|.+++
T Consensus       457 --~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~g  533 (618)
T KOG3762|consen  457 --QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFG  533 (618)
T ss_pred             --cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHH
Confidence              2456666666677777787888777 8999999999999999986554 56677778888888888888888888888


Q ss_pred             HHHHHHHHHHH
Q psy17628        279 VYCIIGTFFVY  289 (338)
Q Consensus       279 ~~~~~~~~~~~  289 (338)
                      +.+++.+++..
T Consensus       534 iAcl~~l~~~~  544 (618)
T KOG3762|consen  534 IACLVTLALFI  544 (618)
T ss_pred             HHHHHHHHHHH
Confidence            87777665443

>PTZ00207 hypothetical protein; Provisional

Probab=98.94  E-value=8.1e-08  Score=85.10  Aligned_cols=176  Identities=10%  Similarity=-0.022  Sum_probs=107.7

Q ss_pred             HHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCC--cchhhHHHHHHHHHHHHHHHHhhhhcCCc--------hHHHHH
Q psy17628        107 VIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIIS--PNYGQNIVGFIQVIMTFFSSLLVDKAGRR--------PLLLIS  175 (338)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~grr--------~~~~~~  175 (338)
                      ++++..+++...........+.++.+.. |.+.+.  ...+.++.++++.+|.+..|+++...-||        ++.+..
T Consensus       356 Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~  435 (591)
T PTZ00207        356 WCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFI  435 (591)
T ss_pred             HHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHH
Confidence            3333334333333445556677777777 763333  23378899999999999999988322222        222222


Q ss_pred             hHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHH
Q psy17628        176 DICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF  255 (338)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~  255 (338)
                      ..++.++.+++...            .+.....+...+.+++++..+.... ..++|+|. ++-|+-..+.....-+|+.
T Consensus       436 ~~~~~~~~lll~~~------------~p~~~L~~~~~lvg~~~G~~~~~~~-~i~selFg-k~~g~~yN~~~~a~pigs~  501 (591)
T PTZ00207        436 PSVCIITMLTLFLT------------LPKAALPLPYFIAAFANGFMAATIA-LVTRTIFA-KDPAKHYNFCFLGSVLSAI  501 (591)
T ss_pred             HHHHHHHHHHHHHH------------CCccHhHHHHHHHHHHhhHhHHHHH-HHHHHHhc-cchHHHhhHHhHHHHHHHH
Confidence            22244444443332            0112445666677777777777666 78999999 7778877777777777776


Q ss_pred             HH-HHHHHHHHHhcc-------------cceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        256 VV-VKTFDDVERAFG-------------TGVAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       256 ~~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      +. ..+.|.++|.-.             ++.+|++.++++.++.++...+.-+++
T Consensus       502 ~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r  556 (591)
T PTZ00207        502 FLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR  556 (591)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence            65 456677765422             344677888888888776655444444

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.92  E-value=3.9e-08  Score=80.79  Aligned_cols=135  Identities=10%  Similarity=-0.062  Sum_probs=104.0

Q ss_pred             HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      ......|.+.+..+.+..++++.......+..++++..+++.+|+|+|+-++.++.++++++.++.-....         
T Consensus        31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~---------  101 (422)
T COG0738          31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS---------  101 (422)
T ss_pred             cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh---------
Confidence            44456777777779999999999999999999999999999999999999999999999998876432111         


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER  266 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (338)
                      .....++...++.+.+.+.--.... .++..+.|++....-+++...+..+|..++|.+.+.++.
T Consensus       102 ~~y~~FL~~lFila~Gi~~LetaaN-p~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         102 KSYGFFLVALFILASGIGLLETAAN-PYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHhccc-hHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            1112233333444444444444444 688889998888888899999999999999999988776

>PRK11462 putative transporter; Provisional

Probab=98.90  E-value=1.3e-08  Score=89.01  Aligned_cols=169  Identities=12%  Similarity=0.101  Sum_probs=104.9

Q ss_pred             hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhh----cCCchHH-HHHhHHHHHHHHHHHHHHHHh
Q psy17628        120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRPLL-LISDICMAICIGALGYYFYLL  193 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~-~~~~~~~~~~~~~~~~~~~~~  193 (338)
                      +.....|+.+++.+. |+++...+.+..+.-+...+.-++.|.++||    +|||+.. +++....+++.+++...   .
T Consensus        25 ~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~---p  101 (460)
T PRK11462         25 FDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST---P  101 (460)
T ss_pred             HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC---C
Confidence            344556677776665 9999999999999999999999999999996    6876554 45656666655443322   1


Q ss_pred             hcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCC-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Q psy17628        194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-PDVKGLALGVICILGSLIEFVVVKTFDDVERAFG---  269 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  269 (338)
                      ...   ......+..+...++..++.....|.. ++.+|+.+ +++|++..+.-...+.+|..+++.+...+....|   
T Consensus       102 ~~s---~~~~~~y~~~~~~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~  177 (460)
T PRK11462        102 DLS---MNGKMIYAAITYTLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDN  177 (460)
T ss_pred             CCC---cchHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            100   011122333334444555555544544 67788765 7889999999888888887777666555544433   


Q ss_pred             ----cceeehhhhHHHHHHHHHHHhhccCC
Q psy17628        270 ----TGVAFGTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       270 ----~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (338)
                          |.....+++++..++..+++...+|.
T Consensus       178 ~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        178 KPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence                33333444444444444444444443

>KOG0253|consensus

Probab=98.86  E-value=2.1e-08  Score=81.24  Aligned_cols=154  Identities=11%  Similarity=-0.084  Sum_probs=105.5

Q ss_pred             HHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHH
Q psy17628        128 KRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLP  207 (338)
Q Consensus       128 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (338)
                      |..-...|.+..+..++......+..+++..+|.++|++|||+.+.....+..+..++-+..            .+....
T Consensus       102 ~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s------------pnf~~L  169 (528)
T KOG0253|consen  102 PALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS------------PNFASL  169 (528)
T ss_pred             HHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC------------CCeehh
Confidence            33333348888888999999999999999999999999999999888876666655443332            223344


Q ss_pred             HHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHH
Q psy17628        208 VASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFF  287 (338)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (338)
                      .++..+.+++.+.  .|...++-.|..|...|..-+-+. +...+|......+.-..+...||++..........+. ..
T Consensus       170 ~~f~~l~~~g~gg--~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~-a~  245 (528)
T KOG0253|consen  170 CVFRALWGFGVGG--LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFA-AR  245 (528)
T ss_pred             hHHHHHHhccCCC--ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH-HH
Confidence            4555555555443  444436778999999998776655 6666676666666655667889988666555444444 44


Q ss_pred             HHhhccCCCC
Q psy17628        288 VYFVVPETKN  297 (338)
Q Consensus       288 ~~~~~~~~~~  297 (338)
                      ..++.||+.+
T Consensus       246 f~~w~~ESpR  255 (528)
T KOG0253|consen  246 FLVWVYESPR  255 (528)
T ss_pred             HHhhcccCcc
Confidence            5555888754

>KOG3626|consensus

Probab=98.84  E-value=9.2e-08  Score=85.19  Aligned_cols=90  Identities=19%  Similarity=0.253  Sum_probs=62.5

Q ss_pred             hhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHH-HHHHHHHHHHHhhhhc
Q psy17628         89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKA  166 (338)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~  166 (338)
                      ...++.++++|     +++...+........+..+.+|+|.|+++. |.+...+..+....++ +..+|.+++|++..|+
T Consensus       382 p~s~~~ll~N~-----if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf  456 (735)
T KOG3626|consen  382 PKSIKRLLSNP-----IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF  456 (735)
T ss_pred             HHHHHHHhcCc-----hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence            34677788887     556666666666666888899999998775 9999988888755554 4457778999999987


Q ss_pred             C--CchHHHHHhHHHHHHH
Q psy17628        167 G--RRPLLLISDICMAICI  183 (338)
Q Consensus       167 g--rr~~~~~~~~~~~~~~  183 (338)
                      .  .|....+.++...+..
T Consensus       457 kl~~r~~a~~~~~~~~l~l  475 (735)
T KOG3626|consen  457 KLSARGAAKFVIVCSVLSL  475 (735)
T ss_pred             cccHHHHHHHHHHHHHHHH
Confidence            4  4444444444443333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.82  E-value=3.7e-07  Score=80.39  Aligned_cols=118  Identities=8%  Similarity=-0.104  Sum_probs=76.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhcCCchH-------HHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHH
Q psy17628        143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPL-------LLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYI  215 (338)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (338)
                      .......+..++.+++.+++.||+++|+.       +.+|.++.+++.+.+..........  ....+.++.+....+.+
T Consensus       313 ~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        313 SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADA--QGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCccCHHHHHHHHHHHH
Confidence            34445556677888889999999999973       6677777766655443221111100  00122344455555555


Q ss_pred             HhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        216 IVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDD  263 (338)
Q Consensus       216 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~  263 (338)
                      .+......+.. .++.+..|++.++.++|+.+....+|+.++..+...
T Consensus       391 ~Ge~~~~~~g~-~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~  437 (489)
T PRK10207        391 LGELFISALGL-AMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATF  437 (489)
T ss_pred             HHHHHHhHHHH-HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555444434 678888999999999999998888888888776643

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.81  E-value=5.6e-09  Score=90.80  Aligned_cols=167  Identities=16%  Similarity=0.077  Sum_probs=109.2

Q ss_pred             HHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhh----hcCCchHHH-HHhHHHHHHHHHHHHH-HHHhh
Q psy17628        122 VVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVD----KAGRRPLLL-ISDICMAICIGALGYY-FYLLK  194 (338)
Q Consensus       122 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~-~~~~~~~~~~~~~~~~-~~~~~  194 (338)
                      ....|.+.++.+. |+++...+....+..+...+..++.|.++|    |+|||+..+ .+....+++.+++... +...+
T Consensus        19 ~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~   98 (428)
T PF13347_consen   19 LLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLS   98 (428)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhh
Confidence            3444555555555 999999999999999999999999999999    789776554 5666666665554432 10000


Q ss_pred             cccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCC-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Q psy17628        195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-PDVKGLALGVICILGSLIEFVVVKTFDDVERAF-----  268 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  268 (338)
                      .     .....+..+...++..+++....+.. ++.+|+.+ +++|....+.......+|..+...+.+.+.+..     
T Consensus        99 ~-----~~~~~~~~~~~~l~~~~~t~~~i~~~-al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~  172 (428)
T PF13347_consen   99 F-----TAKLVWLFVFYILFDIAYTFVQIPYN-ALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDT  172 (428)
T ss_pred             h-----hhHHHHHHHHHHHHHHhhhhccCchh-hcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcc
Confidence            0     01112234444455666666655555 78999987 568999999888888888766666666655433     


Q ss_pred             --ccceeehhhhHHHHHHHHHHHhhccC
Q psy17628        269 --GTGVAFGTFAVYCIIGTFFVYFVVPE  294 (338)
Q Consensus       269 --~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (338)
                        +|+....+.+++..+..++..+..+|
T Consensus       173 ~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  173 SNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             chHHHHHHHHHHHHHHHHhhhhhheeee
Confidence              34455556666666666666666666

>KOG2816|consensus

Probab=98.79  E-value=2e-07  Score=80.48  Aligned_cols=137  Identities=15%  Similarity=0.159  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccce
Q psy17628        148 VGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPG  227 (338)
Q Consensus       148 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                      .++..++.++..|.++||+|||..+........+..+...+.              .++.++...+ .+++....... .
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--------------~~~~~~~~~l-~g~~~~~~s~~-~  134 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--------------GYWFFLLLGL-SGGFSAIFSVG-F  134 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--------------HHHHhhhccc-ccchhhhhhhh-h
Confidence            367788889999999999999999999888887777666654              1232322112 22223233333 4


Q ss_pred             eeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCCCCH
Q psy17628        228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL  300 (338)
Q Consensus       228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (338)
                      ++++|....+.|....|+.+..-..+..++|.+.+.+....|....+.+..+..++..+...+++||+...+.
T Consensus       135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~  207 (463)
T KOG2816|consen  135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE  207 (463)
T ss_pred             hheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence            8999999999999999999998888889999999999888888778888888888888888888999865443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.79  E-value=2.5e-07  Score=81.83  Aligned_cols=118  Identities=12%  Similarity=-0.021  Sum_probs=70.9

Q ss_pred             cchhhHHHHHHHHHHHHHH----HHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHH
Q psy17628        141 PNYGQNIVGFIQVIMTFFS----SLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII  216 (338)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~----g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (338)
                      ..++.++..+..++..++.    +++.||++.++.+.++.++.+++.+.+.......+..   ..-+.++.+....+.+.
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~---~~vs~~~~~~~~~l~~~  394 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDA---GIVSVNWLIASYGLQSI  394 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CccCHHHHHHHHHHHHH
Confidence            3455556665556665555    5555555555777888888888877765542221111   01122344444444444


Q ss_pred             hhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy17628        217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFD  262 (338)
Q Consensus       217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~  262 (338)
                      +-.. ..|....++.+..|++.||.++|+......+++.++..+.+
T Consensus       395 ge~~-~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        395 GELM-ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHH-HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433 34444478899999999999999877666666666655553

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.79  E-value=1.3e-07  Score=77.12  Aligned_cols=156  Identities=13%  Similarity=0.036  Sum_probs=97.6

Q ss_pred             HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHH
Q psy17628        129 RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPV  208 (338)
Q Consensus       129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (338)
                      .+.++.|++..+...+.....+.+.+...+.|.++||+|||+..+...++.+++++....             .+....+
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-------------~~~~~L~  125 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-------------SNYPVLL  125 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-------------cccHHHH
Confidence            344677999999999999999999999999999999999999999888888887754322             1233444


Q ss_pred             HHHHHHHHhhcccccccceeeeecc----CCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhccc--ceeehhhhHHH
Q psy17628        209 ASLAIYIIVFSVGFGPIPGVMMGEL----FTPDVKGLALGVICIL-GSLIEFVVVKTFDDVERAFGT--GVAFGTFAVYC  281 (338)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~e~----~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  281 (338)
                      +...+.+...+.-+...=.-++.|.    +|.+..+...+...+. +.+..+++..+...+.+..+.  ..+|.....+.
T Consensus       126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l  205 (354)
T PF05631_consen  126 LGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLL  205 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHH
Confidence            4444444444333322110134443    4555555555544422 333344444444455555543  56777776666


Q ss_pred             HHHHHHHHhhccCCCC
Q psy17628        282 IIGTFFVYFVVPETKN  297 (338)
Q Consensus       282 ~~~~~~~~~~~~~~~~  297 (338)
                      +++.+++....+|..+
T Consensus       206 ~~~~~~I~~~W~ENyg  221 (354)
T PF05631_consen  206 AVAAVLILKTWPENYG  221 (354)
T ss_pred             HHHHHHHHhcccccCC
Confidence            6666666555566544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.77  E-value=1.6e-08  Score=84.94  Aligned_cols=160  Identities=13%  Similarity=0.036  Sum_probs=91.0

Q ss_pred             chHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHH-HHHHhhcc
Q psy17628        119 GINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGY-YFYLLKLD  196 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~  196 (338)
                      .+.....+.+.++++ .|++.++.|.+.+...+..++.+++.|.++||+|.||-++.......+....+.. .+.+..+ 
T Consensus        22 ~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~-  100 (412)
T PF01306_consen   22 IWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ-  100 (412)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH-
T ss_pred             HHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            356777788888887 5999999999999999999999999999999999777655443332221111111 1111000 


Q ss_pred             cchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccee
Q psy17628        197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP---DVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVA  273 (338)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (338)
                           .+   ..+...+.+...+..+.+..  =+.|.+-.   +..+.-.|=.-..+.+|-+++..+.|.+.+. +.+..
T Consensus       101 -----~n---~~lg~iig~i~l~~~f~~~~--~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~  169 (412)
T PF01306_consen  101 -----SN---FWLGAIIGGIYLGLVFNAGV--PLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNII  169 (412)
T ss_dssp             -----TT----HHHHHHTTTTTTTTTTTHH--HHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             -----HH---HHHHHHHHHHHHHHHHcccc--hHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHH
Confidence                 01   12222222333343333332  12243322   2235556667788888888999999988764 33456


Q ss_pred             ehhhhHHHHHHHHHHHh
Q psy17628        274 FGTFAVYCIIGTFFVYF  290 (338)
Q Consensus       274 ~~~~~~~~~~~~~~~~~  290 (338)
                      +++.....++..++.++
T Consensus       170 fwi~s~~~~il~lll~~  186 (412)
T PF01306_consen  170 FWIASAAAIILLLLLLL  186 (412)
T ss_dssp             HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66555544444434333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.76  E-value=6.5e-08  Score=84.81  Aligned_cols=168  Identities=11%  Similarity=0.014  Sum_probs=101.2

Q ss_pred             HHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcC-----CchHHHHHhHHHH-HHHHH
Q psy17628        113 CFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG-----RRPLLLISDICMA-ICIGA  185 (338)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~~~~~-~~~~~  185 (338)
                      ++.+... .......+.+++ +.|.+..+.+...+...+...+-.+ +|.++||++     ||+.++++.++.. ++...
T Consensus        35 y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~  112 (468)
T TIGR00788        35 LFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGL  112 (468)
T ss_pred             HHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHh
Confidence            3344443 444444555555 5699999988888888887777555 999999997     6666666655442 22111


Q ss_pred             HHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhh---HHHHHHHHHHHHHHHHHHHHH
Q psy17628        186 LGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL---ALGVICILGSLIEFVVVKTFD  262 (338)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~---~~~~~~~~~~~~~~~~~~~~~  262 (338)
                      +...           .+..........+..++.+.... ..-++..|..+ +.+..   ..+.......+|..+++.+.+
T Consensus       113 l~~~-----------~~~~~~~~~~~~l~~~~~a~~dv-~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G  179 (468)
T TIGR00788       113 LPGK-----------VSSAKVAAAFIFLAALAKALYDV-LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGG  179 (468)
T ss_pred             cccc-----------cchHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence            1110           01111222233333333333333 33367888887 44433   334444555678889999999


Q ss_pred             HHHHhcccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628        263 DVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      .+.+..+|+..|++.+.+.++.. +..++++|.+
T Consensus       180 ~l~~~~~~~~~f~~~a~l~ll~~-~~~~~~~E~~  212 (468)
T TIGR00788       180 PLLDKTLTRILFLITAALLLLQL-FVSNLSKERR  212 (468)
T ss_pred             HHHHhcCcchHHHHHHHHHHHHH-HHHHhccccc
Confidence            99998999998888877776663 4445577754

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.74  E-value=1e-07  Score=82.46  Aligned_cols=68  Identities=9%  Similarity=0.065  Sum_probs=51.7

Q ss_pred             hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCC-chHHHHHhHHHHHHHHHHH
Q psy17628        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICIGALG  187 (338)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~  187 (338)
                      +.....+++.++++ .|++..+.++..+...++.++++++.|.++||+|| |+++.++.++..+......
T Consensus        18 ~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~   87 (418)
T TIGR00889        18 WGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA   87 (418)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            44455555655544 69999999999999999999999999999999965 6677766666555544433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2615|consensus

Probab=98.72  E-value=4.8e-07  Score=73.85  Aligned_cols=121  Identities=8%  Similarity=0.020  Sum_probs=80.7

Q ss_pred             HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcC--CchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHH
Q psy17628        132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG--RRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVA  209 (338)
Q Consensus       132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (338)
                      ...|+++.+.+.+.+..++...+.+.......||..  -+-.+..+...+.-..+.....            ........
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~------------~~~~~l~~  357 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA------------RTPVVLYL  357 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc------------ccchhhhH
Confidence            445899999999999999888888888777778766  4444444433333322222221            11223333


Q ss_pred             HHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        210 SLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE  265 (338)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (338)
                      ...+..+..+.....+. .++....|.++||+.+|+....+.++-+++|.+.|.+.
T Consensus       358 ~s~l~sf~~A~~vt~Lt-~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~  412 (451)
T KOG2615|consen  358 GSTLKSFSTASVVTCLT-SLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF  412 (451)
T ss_pred             HHHHHHHHHHHhhHHHH-HHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence            34444444444444444 67788899999999999999999999999998887543

>KOG2325|consensus

Probab=98.70  E-value=4.2e-08  Score=83.69  Aligned_cols=160  Identities=13%  Similarity=0.009  Sum_probs=103.6

Q ss_pred             HHHHh--ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCC-chHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhch
Q psy17628        129 RILIA--TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGL  205 (338)
Q Consensus       129 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (338)
                      .|+++  .+-+.+..|+..+...++..+++++.|+...|.+. |+.++.+.+++.++.++.....+..+       ...+
T Consensus        59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~-------~~~y  131 (488)
T KOG2325|consen   59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN-------GVKY  131 (488)
T ss_pred             hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc-------chHH
Confidence            34555  46677778999999999999999999999999885 77778888888888887744322211       1334


Q ss_pred             HHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--hcc-----------cce
Q psy17628        206 LPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER--AFG-----------TGV  272 (338)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------~~~  272 (338)
                      ++++...+.+++.  +.....-.|+++..-.+.|.++++.......++..++|.+-..+..  ..|           +..
T Consensus       132 ~mL~~R~l~Gvg~--~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTa  209 (488)
T KOG2325|consen  132 LMLVARILTGVGV--GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTA  209 (488)
T ss_pred             HHHHHHHHcCcCc--ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecch
Confidence            5555555544433  3334444788887777888888887776555555555544332211  111           122


Q ss_pred             eehhhhHHHHHHHHHHHhhccCCCC
Q psy17628        273 AFGTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      +-++.+++.++..++..++.+|..+
T Consensus       210 p~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  210 PAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhheeeccc
Confidence            4456666666666666677777544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.63  E-value=5.6e-09  Score=92.09  Aligned_cols=172  Identities=13%  Similarity=0.055  Sum_probs=0.0

Q ss_pred             hHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHH-HHHHHHHHHHHhhhhcC
Q psy17628         90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAG  167 (338)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g  167 (338)
                      ...+.+++||     .++...+...........+.+|.|.|++.. +.++.+++.+.....+ +.++|.+++|++..|+.
T Consensus       296 ~~l~~Ll~Np-----~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k  370 (539)
T PF03137_consen  296 KALKRLLTNP-----VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK  370 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec
Confidence            3455566665     555556666666666778889999988765 8888888877765555 56788899999999874


Q ss_pred             --CchHHHHHhHHHHHHHHHHHHHHH-------------Hh----h-cc-----------------------cchh-hhh
Q psy17628        168 --RRPLLLISDICMAICIGALGYYFY-------------LL----K-LD-----------------------EKLV-DGL  203 (338)
Q Consensus       168 --rr~~~~~~~~~~~~~~~~~~~~~~-------------~~----~-~~-----------------------~~~~-~~~  203 (338)
                        .|..+....+...++.+.....+.             .+    . ..                       .+.. ...
T Consensus       371 l~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~  450 (539)
T PF03137_consen  371 LSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNK  450 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccc
Confidence              344444333333333222110000             00    0 00                       0000 001


Q ss_pred             chHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q psy17628        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL-IEFVVVKTFDDVERA  267 (338)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  267 (338)
                      ...+++...+..+..+....+.. ...-..+|+++|+.|.|+...+..+ |..-+|.++|.++|.
T Consensus       451 ~~~Fl~~~~~~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  451 LIPFLILLFILSFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            11222222233333333444444 4556778999999999998877555 556788888888775

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.62  E-value=6.3e-07  Score=72.84  Aligned_cols=153  Identities=12%  Similarity=-0.008  Sum_probs=119.5

Q ss_pred             HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      ......++.+-++.|.|.+.++.+++.+.+...+.+++..++++|+|.++.+..++++.+++..+=...           
T Consensus        29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-----------   97 (395)
T COG2807          29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-----------   97 (395)
T ss_pred             hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-----------
Confidence            345556677778889999999999999999999999999999999999999999988888877654332           


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccceeehhhhH
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF-GTGVAFGTFAV  279 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  279 (338)
                        .....+....+.+.+.+.+..-.+ ..+-+.||.+ -+..+|++.....+++.+++.+...+.++. +|+....+.+.
T Consensus        98 --~~~~L~~gt~l~G~gIav~nVLLP-slIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl  173 (395)
T COG2807          98 --GLPLLFLGTLLAGAGIAVINVLLP-SLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWAL  173 (395)
T ss_pred             --cHHHHHHHHHHHHhhHHHHHHhhh-HHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHH
Confidence              223445555566666665555555 6788888865 588999999999999999988888887776 69888888887


Q ss_pred             HHHHHHHHH
Q psy17628        280 YCIIGTFFV  288 (338)
Q Consensus       280 ~~~~~~~~~  288 (338)
                      .+++..++.
T Consensus       174 ~allAl~~W  182 (395)
T COG2807         174 LALLALLIW  182 (395)
T ss_pred             HHHHHHHHH
Confidence            777766443

>PRK09848 glucuronide transporter; Provisional

Probab=98.61  E-value=4.6e-07  Score=79.39  Aligned_cols=125  Identities=11%  Similarity=0.051  Sum_probs=70.9

Q ss_pred             HHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc----CCchHH-HHHhHHHHHHHHHHHHHHHHhhc
Q psy17628        122 VVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA----GRRPLL-LISDICMAICIGALGYYFYLLKL  195 (338)
Q Consensus       122 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----grr~~~-~~~~~~~~~~~~~~~~~~~~~~~  195 (338)
                      ....|.+.++++. |++..+.+....+..+...+..++.|+++||.    |||+.. ..+.+...+..+++....  ...
T Consensus        26 ~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~--~~~  103 (448)
T PRK09848         26 MGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVP--TDW  103 (448)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCc--CCC
Confidence            3444555566665 99999999999999999999999999999986    667654 455444443333321110  000


Q ss_pred             ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHH
Q psy17628        196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSL  252 (338)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~  252 (338)
                      .   ......+......+...+++....+.. ++..|+. ++++|....+.-.....+
T Consensus       104 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~r~~~~~~r~~~~~~  157 (448)
T PRK09848        104 S---HSSKVVYAYLTYMGLGLCYSLVNIPYG-SLATAMTQQPQSRARLGAARGIAASL  157 (448)
T ss_pred             C---cchHHHHHHHHHHHHHHHHHHhcccHh-hhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence            0   001112222233344444544444443 4455554 446787766654443333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.58  E-value=4.7e-07  Score=77.23  Aligned_cols=169  Identities=18%  Similarity=0.174  Sum_probs=113.1

Q ss_pred             hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhh----cCCch-HHHHHhHHHHHHHHHHHHHHHHh
Q psy17628        120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRP-LLLISDICMAICIGALGYYFYLL  193 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~~~~~~~~~~~~~  193 (338)
                      ......|+..++.+. |+++..++.+..+.=+..++.-++.|.++||    +||+| .++.+.+..++...++.......
T Consensus        28 ~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~  107 (467)
T COG2211          28 FGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFS  107 (467)
T ss_pred             HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcc
Confidence            445667788888777 9999999999999999999999999999996    56654 45566566666655544331110


Q ss_pred             hcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Q psy17628        194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTFDDVERAF----  268 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  268 (338)
                            .........+...+.+.+++....|.. ++.+|+. .+++|.+..+.-..+..++..+...+.+.+....    
T Consensus       108 ------~~~k~~ya~vtY~l~~l~YT~vniPy~-al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~  180 (467)
T COG2211         108 ------MTGKLIYALVTYMLLGLGYTLVNIPYG-ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGD  180 (467)
T ss_pred             ------cCcchHHHHHHHHHHHHHHHheeCchh-hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                  012334445555666677777666666 7778875 4578999999888888888777777777666543    


Q ss_pred             ---ccceeehhhhHHHHHHHHHHHhhccCC
Q psy17628        269 ---GTGVAFGTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       269 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (338)
                         |++....+++++..+..+++++-.+|.
T Consensus       181 ~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER  210 (467)
T COG2211         181 KALGYQGTALVLGVIGVILLLFCFFNVKER  210 (467)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence               333344445555555555555544443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.57  E-value=4.3e-08  Score=84.79  Aligned_cols=131  Identities=9%  Similarity=0.027  Sum_probs=80.4

Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHH
Q psy17628        136 SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYI  215 (338)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (338)
                      +++...+....+..++.++|..+....--+..-|+++....++.++..+.-.......+.. -..++. +..+.-..+..
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~-~Gi~d~-~f~lgd~~l~~  329 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLD-LGIPDQ-WFALGDTILEE  329 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeee-eCcCCe-EEEEEhHHHHH
Confidence            6666666677777777777777776666666777777666555544433211110000000 000111 22222233344


Q ss_pred             HhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628        216 IVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG  269 (338)
Q Consensus       216 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (338)
                      ......+.|.. .+++|+.|+...|+.+++...+.++|..++..+...+.+..+
T Consensus       330 ~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  330 VIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44455556665 688999999999999999999999999888888877766555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.55  E-value=1.6e-06  Score=78.33  Aligned_cols=155  Identities=11%  Similarity=0.059  Sum_probs=101.0

Q ss_pred             HHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHH
Q psy17628        130 ILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPV  208 (338)
Q Consensus       130 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (338)
                      +.+..|++...+...........-+..+++|+++|+ +||++.+..+.++..++..++.+........    .......+
T Consensus        14 l~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~----~~~~~~~l   89 (654)
T TIGR00926        14 FLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH----PLHDLLDL   89 (654)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc----chHHHHHH
Confidence            334457777777777777777777888899999996 7999999999988888877666531110000    00112233


Q ss_pred             HHHHHHHHhhcccccccceeeeeccCCch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccceeehhhh
Q psy17628        209 ASLAIYIIVFSVGFGPIPGVMMGELFTPD---VKGLALGVICILGSLIEFVVVKTFDDVERAF-------GTGVAFGTFA  278 (338)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  278 (338)
                      +.+.+..++.+..-.... +...|.++++   .|-....+.++..++|+.+++.+.+++.+..       +|...|.+.+
T Consensus        90 ~gLaLia~G~GgiKp~vs-af~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~  168 (654)
T TIGR00926        90 LGLALIALGTGGIKPCVS-AFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA  168 (654)
T ss_pred             HHHHHHHhhccccccCch-hhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence            344444444444434444 7888888653   3677888889999999999999988876443       4655666666


Q ss_pred             HHHHHHHHHHH
Q psy17628        279 VYCIIGTFFVY  289 (338)
Q Consensus       279 ~~~~~~~~~~~  289 (338)
                      ++.+++.++..
T Consensus       169 i~m~ia~lvf~  179 (654)
T TIGR00926       169 ILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHH
Confidence            55555554433

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.55  E-value=3.5e-07  Score=57.82  Aligned_cols=62  Identities=18%  Similarity=0.253  Sum_probs=54.8

Q ss_pred             hcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHH
Q psy17628        117 FSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDIC  178 (338)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~  178 (338)
                      +.+......|.|.++++.|++..+.+.+..+..+..+++.+++|.++||+++++..+....+
T Consensus        13 f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   13 FAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            33466788899999999999999999999999999999999999999999999988776544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.54  E-value=6.7e-07  Score=81.17  Aligned_cols=91  Identities=12%  Similarity=0.082  Sum_probs=62.4

Q ss_pred             hHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHH-HHHHHHHHHHHhhhhcC
Q psy17628         90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAG  167 (338)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g  167 (338)
                      ..++.++++|.+     +...+..+......+.+..|+|.++++ .|++..+++++.....+ +.+++.+++|+++||++
T Consensus       321 ~~~~~Ll~n~~f-----~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~  395 (633)
T TIGR00805       321 KIIKRLLCNPIY-----MLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFK  395 (633)
T ss_pred             HHHHHHHcCcHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeec
Confidence            356778888733     223233333333466788899999886 49999999888877766 56889999999999998


Q ss_pred             C--chHHHHHhHHHHHHHHH
Q psy17628        168 R--RPLLLISDICMAICIGA  185 (338)
Q Consensus       168 r--r~~~~~~~~~~~~~~~~  185 (338)
                      +  |+.+.++.++..++.+.
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       396 LNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             ccHHHHHHHHHHHHHHHHHH
Confidence            4  45666665555555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.48  E-value=7.1e-07  Score=76.26  Aligned_cols=64  Identities=13%  Similarity=0.155  Sum_probs=52.6

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCC-chHHHHHhHHHHHHH
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICI  183 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~  183 (338)
                      +.....|.+.++++.|++..+++.+.+...+..+++.++.|.++||.++ |+++.+..++.++..
T Consensus        18 ~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~   82 (400)
T PF03825_consen   18 YGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALAL   82 (400)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence            5567778899999999999999999999999999999999999999864 555555555444443

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.38  E-value=3.6e-06  Score=71.90  Aligned_cols=156  Identities=10%  Similarity=0.147  Sum_probs=86.5

Q ss_pred             hHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCC-CCCcchhhHHHHHHHHHHHHHHHHhhhhcCC
Q psy17628         90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSK-IISPNYGQNIVGFIQVIMTFFSSLLVDKAGR  168 (338)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr  168 (338)
                      ..+++..+++..     +...++.....++++-+..|...+-++..-+ ..-.|..-.+..+.+.+.++..|++-.++.+
T Consensus       253 ~~~~~~y~n~~v-----l~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~  327 (511)
T TIGR00806       253 SELVTIYRNPQL-----LLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR  327 (511)
T ss_pred             HHHHHHhcCcch-----hhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence            345556666643     3333334444455777777777776666322 2234555666677777888889998665543


Q ss_pred             chHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHH
Q psy17628        169 RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI  248 (338)
Q Consensus       169 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  248 (338)
                      -..+.++.....-+.+++...          ...+.|...+...++...+.+...... .-++.....+.-|...|++++
T Consensus       328 ~~~l~l~v~s~~~~gll~~m~----------~t~~Iw~~Y~~yvlf~~~y~flitia~-~~iA~~L~~~~~aLvFGiNtf  396 (511)
T TIGR00806       328 WSKLLIAVVSAIQAGLVFWMS----------QSHDIWVLYVTYVLFRGIYQFLVPIAT-FQIASSLSKELCALVFGINTF  396 (511)
T ss_pred             hHHHHHHHHHHHHHHHhhhhh----------cccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccceEEEEecHHH
Confidence            323333322222221111111          123556666777777766665554444 344555555666888888888


Q ss_pred             HHHHHHHHHHHHH
Q psy17628        249 LGSLIEFVVVKTF  261 (338)
Q Consensus       249 ~~~~~~~~~~~~~  261 (338)
                      +..+...+...+.
T Consensus       397 vAl~LQtilT~iV  409 (511)
T TIGR00806       397 VATALKTIITAVV  409 (511)
T ss_pred             HHHHHHHheEEEE
Confidence            7766665555433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.34  E-value=2.7e-05  Score=64.96  Aligned_cols=163  Identities=9%  Similarity=-0.016  Sum_probs=104.8

Q ss_pred             hhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhh-hc
Q psy17628         89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVD-KA  166 (338)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~  166 (338)
                      ...++++..+|..++.. ....+....    ++.--..+-+|-.+ +|++..++..++...+.+..+|....|++.. |.
T Consensus       198 ~~a~~~~~~~~~a~~f~-~fl~l~t~a----~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~  272 (403)
T PF03209_consen  198 REAWRQVWASPQARRFF-VFLFLGTLA----FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRL  272 (403)
T ss_pred             HHHHHHHHhCCChhHHH-HHHHHHHHH----HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            34567777777444333 222222221    22222222233333 4899999999999999999999999988877 67


Q ss_pred             CCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHH
Q psy17628        167 GRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVI  246 (338)
Q Consensus       167 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  246 (338)
                      ++++....++....++..++......         .+.+.+.....+++++.+....... +.+-++.+++..|+.+|.-
T Consensus       273 ~~~~~a~~G~~~~~~~f~lii~a~~~---------~~~~~~~~~~~l~G~g~G~f~vgal-s~mM~lt~~~~aG~~mG~W  342 (403)
T PF03209_consen  273 GKKRTAALGCLLGALAFALIILAGPL---------GSPWLFRPGVFLLGLGNGLFTVGAL-SLMMDLTSAGRAGLFMGAW  342 (403)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhc---------ccchHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCCcchhHHHHHH
Confidence            88888878888777777665554221         2234555555566655554433333 5667777778889999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy17628        247 CILGSLIEFVVVKTFDDVER  266 (338)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~  266 (338)
                      ...+.++..++..+.+.+.|
T Consensus       343 GaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  343 GAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88887777777777776655

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.28  E-value=3.1e-05  Score=67.73  Aligned_cols=144  Identities=19%  Similarity=0.265  Sum_probs=88.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHH-HHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhccc
Q psy17628        143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI-CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVG  221 (338)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                      +..++..+...+..++.|.++|+-++||.++......+. +...+.+.    .      +...+...++..+...++...
T Consensus        74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v----~------~~~~~~~~~l~iia~v~~~~~  143 (477)
T PF11700_consen   74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV----S------PGQWWLALVLFIIANVGYEAS  143 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh----C------cchHHHHHHHHHHHHHHHHHH
Confidence            456677788888889999999999988877665544443 33333322    1      112233334444444444443


Q ss_pred             ccccceeeeeccCCchhh--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Q psy17628        222 FGPIPGVMMGELFTPDVK--------------------------GLALGVICILGSLIEFVVVKTFDDVERAFG------  269 (338)
Q Consensus       222 ~~~~~~~~~~e~~p~~~r--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  269 (338)
                      ..... +++.|+.+++.+                          ++..+.....+++|+.+.-.+.-.+....+      
T Consensus       144 ~vfyn-a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~  222 (477)
T PF11700_consen  144 NVFYN-AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNT  222 (477)
T ss_pred             HHHHH-HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence            33333 788999888877                          899999999999988766554433322221      


Q ss_pred             --cceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628        270 --TGVAFGTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       270 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                        .+..+.+.++..++..+..++++|+.++
T Consensus       223 ~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  223 WAIRVAFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence              2445555666656666666666777644

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.20  E-value=2.1e-05  Score=68.32  Aligned_cols=157  Identities=13%  Similarity=0.060  Sum_probs=97.7

Q ss_pred             hHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-----CCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628        127 LKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (338)
Q Consensus       127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                      .+.+.+++|.++.+...+.....+- -...++.|.++|-+     .||+.++++.++..++.+.++.....        .
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~--------~   83 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS--------E   83 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc--------c
Confidence            3445566788877765554444333 24467899999976     35556666666665554444433110        0


Q ss_pred             hhchHHHHHHHHHHHhhcccccccceeeeeccC---CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF---TPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA  278 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                      .......+.+.+..++........- ++.+|..   |.+ ||..++.......+|+.++..+.|.+.+..+++..|.+.+
T Consensus        84 ~s~~~~~~~l~la~~g~a~~DV~aD-a~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~  161 (433)
T PF03092_consen   84 SSAAIAVVLLFLASFGYAFADVAAD-ALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA  161 (433)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence            1112222333333333333322222 4555654   444 7888888889999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhhccC
Q psy17628        279 VYCIIGTFFVYFVVPE  294 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~  294 (338)
                      .+..+..+...+..+|
T Consensus       162 ~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  162 ALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            8877777666666665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.19  E-value=8.7e-06  Score=67.80  Aligned_cols=137  Identities=9%  Similarity=0.068  Sum_probs=85.5

Q ss_pred             HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcC-----CchHHH-HHhHHHHHHHHHHHHHHHHhhcccchhhhhch
Q psy17628        132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG-----RRPLLL-ISDICMAICIGALGYYFYLLKLDEKLVDGLGL  205 (338)
Q Consensus       132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (338)
                      .|++.+..-.+.......+.+ +..+..|+.||+.+     ||..++ .|...+..+..+...............+.+.+
T Consensus         8 vEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~   86 (403)
T PF03209_consen    8 VELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW   86 (403)
T ss_pred             HHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence            344544444444555444443 45789999999988     776554 45555555555555544433321000111222


Q ss_pred             H----HHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628        206 L----PVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT  270 (338)
Q Consensus       206 ~----~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (338)
                      .    ....+.+++.+.+....+.. ++++|..|++.|+++.++.....-+|..++..+.+.+++.+..
T Consensus        87 ~g~~~a~l~F~l~G~G~~~s~T~~l-ALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~  154 (403)
T PF03209_consen   87 LGLALAALAFLLYGLGVHASGTSFL-ALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP  154 (403)
T ss_pred             HHHHHHHHHHHHHHhhHhHhHHHHH-HHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence            2    22333444444444444444 7899999999999999999999889988999999988886554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.18  E-value=0.00018  Score=61.71  Aligned_cols=130  Identities=15%  Similarity=0.061  Sum_probs=86.0

Q ss_pred             HhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhc
Q psy17628        125 FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLG  204 (338)
Q Consensus       125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (338)
                      ..+..|+...|++....+..-....+.++.++++..++.+|+|..+.=+++......+..+....++....+  ......
T Consensus       279 ~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~--~~~~s~  356 (432)
T PF06963_consen  279 GLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP--FSSISA  356 (432)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC--chhhHH
Confidence            344556667799999999999999999999999999999999998888888777766666555544433211  000011


Q ss_pred             hHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHH
Q psy17628        205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVV  257 (338)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~  257 (338)
                      ...+....+.-.+.-..--... .++.|..|+++||+..|+-+...++...+.
T Consensus       357 ~~l~~gi~~SR~GLW~fDL~~~-qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~  408 (432)
T PF06963_consen  357 YLLLGGIALSRIGLWSFDLAVT-QIMQENVPESERGAVSGVQNSLQSLFELLS  408 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHH-HhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence            1111112222122211112233 578999999999999999888887766544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2816|consensus

Probab=98.12  E-value=1.1e-05  Score=69.81  Aligned_cols=119  Identities=13%  Similarity=0.119  Sum_probs=87.5

Q ss_pred             ccCCCCCcchhhHHHHHHHHHHHHHHH-HhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHH
Q psy17628        134 TNSKIISPNYGQNIVGFIQVIMTFFSS-LLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA  212 (338)
Q Consensus       134 ~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (338)
                      .|++..+.+.+.+..+....+++++.. .+...+|-|++...|+....+.....++.            +..|.++....
T Consensus       272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~------------~~~w~~~~~~v  339 (463)
T KOG2816|consen  272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA------------TETWMMFAAGV  339 (463)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh------------ccchhhhHHHH
Confidence            488888888888888888888887766 78888999998888888888887777664            12233332222


Q ss_pred             HHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER  266 (338)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (338)
                       ...... ...+...+.++-..+++.+|+.+++...+..+.+.++|.+.+.+..
T Consensus       340 -~~~~~~-~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  340 -VVALAG-IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             -HHHhhc-chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence             222222 2333334677888889999999999999999999999998887654

>KOG2563|consensus

Probab=98.10  E-value=3e-05  Score=65.13  Aligned_cols=124  Identities=16%  Similarity=0.032  Sum_probs=82.4

Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhch--HHHHHHHHH
Q psy17628        137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGL--LPVASLAIY  214 (338)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  214 (338)
                      +....-+...++.+.+++..+.+-|+.||+|-|...+++....+++..+-.......-+      ...+  .....-.+.
T Consensus        77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~------~~f~~~l~~~Gq~ia  150 (480)
T KOG2563|consen   77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVP------PLFRRPLTHTGQSIA  150 (480)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcccc------ccchhhhhHHhHHHH
Confidence            55666788889999999999999999999999999999999999988766554222111      1111  111222222


Q ss_pred             HHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628        215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA  267 (338)
Q Consensus       215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (338)
                      ..... ....++.-...-+||+++|+++..+..+...+|..++..+-+.+..+
T Consensus       151 a~Aq~-Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  151 AAAQP-FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             HHhhh-HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence            11111 11222212345579999999999999988888887776666555543

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.97  E-value=1.3e-06  Score=77.33  Aligned_cols=145  Identities=8%  Similarity=-0.050  Sum_probs=0.5

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcc---
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD---  196 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~---  196 (338)
                      ........+.+-++++++..+.+++.+.+-++.++..++..++.+|-.|-+.+-.|.++++++.+++++..+.....   
T Consensus        19 ~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~   98 (539)
T PF03137_consen   19 SGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYE   98 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccc
Confidence            33444556667777899999999999999999999999999999997777888888999999988877542221110   


Q ss_pred             ---------------c----------------chhhhhchHHHHHHHHHHHhhcc---cccccceeeeeccCCchhhhhH
Q psy17628        197 ---------------E----------------KLVDGLGLLPVASLAIYIIVFSV---GFGPIPGVMMGELFTPDVKGLA  242 (338)
Q Consensus       197 ---------------~----------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~~p~~~r~~~  242 (338)
                                     .                ..........+..+.+..+..++   ...++..+|+-|..+++.-+..
T Consensus        99 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splY  178 (539)
T PF03137_consen   99 EASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLY  178 (539)
T ss_dssp             -----------------------------------------------------SSS------------------------
T ss_pred             cccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccc
Confidence                           0                00000111112222222222222   3345555899999999998999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy17628        243 LGVICILGSLIEFVVVKTFDDV  264 (338)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~  264 (338)
                      .|+......+|.+++-.+.+..
T Consensus       179 iGi~~~~~~lGPa~Gf~lg~~~  200 (539)
T PF03137_consen  179 IGILYAMSILGPALGFLLGSFC  200 (539)
T ss_dssp             ----------------------
T ss_pred             hhhhhHHhhccHHHHHHHHHHH
Confidence            9998888888777665555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.96  E-value=0.00063  Score=49.58  Aligned_cols=111  Identities=14%  Similarity=0.053  Sum_probs=79.4

Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHH
Q psy17628        137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII  216 (338)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (338)
                      +.........+......+.+++.+.+.+++|.|+.++++.+...+........             +.+..+..-.+.++
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-------------~~~~l~~~s~l~G~  101 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-------------NSYTLYPASALLGF  101 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHhh
Confidence            33444556667778888889999999999999999999977776554433221             23445555667777


Q ss_pred             hhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17628        217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF  261 (338)
Q Consensus       217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~  261 (338)
                      +.+..+.... .++.+...++.|++-.++...+...+..++..+.
T Consensus       102 ~~a~lW~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  102 GAALLWTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             hhHHhhHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            7777776666 7888888888999988887777776665555443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.89  E-value=0.00053  Score=59.61  Aligned_cols=126  Identities=8%  Similarity=-0.095  Sum_probs=81.4

Q ss_pred             CcchhhHHHHHHHHHH-HHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcc-cch-------hhh--------
Q psy17628        140 SPNYGQNIVGFIQVIM-TFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD-EKL-------VDG--------  202 (338)
Q Consensus       140 ~~~~~~~~~~~~~~~~-~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~--------  202 (338)
                      ...++-+...+...+. .++.+++++|++|++++............++++..++.... ++.       ...        
T Consensus        44 ~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i  123 (472)
T TIGR00769        44 IIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFI  123 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHH
Confidence            4445555554544444 78899999999999999887777777776666654332111 000       000        


Q ss_pred             ---hchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        203 ---LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE  265 (338)
Q Consensus       203 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (338)
                         ..|...+.............+.+.|.+++|++..++-.+-.++....+++|..+++.+...+.
T Consensus       124 ~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       124 AILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               011222222222222233333467889999999999999999999999999999998887765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.84  E-value=0.0013  Score=57.92  Aligned_cols=120  Identities=16%  Similarity=0.136  Sum_probs=73.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhhhcCC--ch-----HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHH
Q psy17628        141 PNYGQNIVGFIQVIMTFFSSLLVDKAGR--RP-----LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI  213 (338)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr--r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (338)
                      ..+..++..+.-++.+++.+++=.|..|  |.     =+.+|+++.+++.+.+.+.......+   ...+.++.+....+
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~---~~~s~~wl~~~~~~  386 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMY---GHSSLPLMVLGLAV  386 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCcCHHHHHHHHHH
Confidence            5677788888888888877777566532  21     15567777777766665443222111   01223333333333


Q ss_pred             HHHhhcccccccceeeeeccCCchhhhhHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17628        214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG-SLIEFVVVKTFDDV  264 (338)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~  264 (338)
                      .. ..-....|+..+.++++.|++.||..+|+..... .+++.++..+.+..
T Consensus       387 ~t-~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        387 MG-FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HH-HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33 3344556676688999999999999999986533 56666665555433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.77  E-value=0.0013  Score=55.69  Aligned_cols=178  Identities=11%  Similarity=0.001  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHhhHHHHHh--ccCCCCCcchhh-HHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHH
Q psy17628        103 KATIVIVGLLCFLSFSGINVVIFYLKRILIA--TNSKIISPNYGQ-NIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM  179 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~  179 (338)
                      +..++.+...++..+   -..-.|...++.+  .|++..+...-. -+..-..++..++...+.|..+-|++++++.+..
T Consensus         5 ~~~~llc~~gf~~~f---rPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~   81 (412)
T PF01770_consen    5 KITLLLCLFGFFKEF---RPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSY   81 (412)
T ss_pred             HHHHHHHHHHHHHhc---CCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            334444444444332   1233445555544  477776654322 2333444556677888999999999999987777


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHH
Q psy17628        180 AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (338)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (338)
                      .+...++.+.            .....+.+.-...+...+.  -...++++=...|+++--++.+.......+|.+++..
T Consensus        82 i~t~~lll~~------------~sv~~mq~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~  147 (412)
T PF01770_consen   82 IITWLLLLFG------------TSVLAMQLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSL  147 (412)
T ss_pred             HHHHHHHHHH------------CcHHHHHHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666555443            1222223333333333222  2222345555567776677777777777667666666


Q ss_pred             HHHHHHHhcccceeeh-hhhHHHHHHHHHHHhhccCCCC
Q psy17628        260 TFDDVERAFGTGVAFG-TFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       260 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      +...+....+...... .....+...+++..+++|..++
T Consensus       148 lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  148 LGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            5554444222211111 2222333333344455776543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.76  E-value=0.00019  Score=60.65  Aligned_cols=148  Identities=11%  Similarity=0.154  Sum_probs=76.1

Q ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc---cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcC
Q psy17628         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT---NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG  167 (338)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g  167 (338)
                      .+++..+++     .++...++.....++++....|...+.++.   +-...-.|..-....+.+.++++..|++..++.
T Consensus       239 ~~~~~y~~~-----~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~  313 (412)
T PF01770_consen  239 DFKSCYSNP-----RLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWD  313 (412)
T ss_pred             HHHHHhcCc-----hHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchH
Confidence            445555555     333444444445556777777777777766   222233355666667777778888888866666


Q ss_pred             CchHHHHHhHHHH--HHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHH
Q psy17628        168 RRPLLLISDICMA--ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGV  245 (338)
Q Consensus       168 rr~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  245 (338)
                      +..-+..+.....  ...+++..            ..+.+...+...++...+........ .-++.....+.-|...|+
T Consensus       314 ~~~~l~l~~~S~l~a~~L~lm~~------------t~~Iwv~Y~~yIif~~~y~fliTiA~-~qIA~~l~~e~yaLVFGi  380 (412)
T PF01770_consen  314 RWGELALGVFSLLQAGLLFLMSF------------TGNIWVCYAGYIIFRSLYMFLITIAS-FQIAKNLSEERYALVFGI  380 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccceeeeeee
Confidence            6544443332222  22222222            12344555555555544443333222 223333344445666666


Q ss_pred             HHHHHHHHHHH
Q psy17628        246 ICILGSLIEFV  256 (338)
Q Consensus       246 ~~~~~~~~~~~  256 (338)
                      ..++..+...+
T Consensus       381 Ntf~Al~LQti  391 (412)
T PF01770_consen  381 NTFVALVLQTI  391 (412)
T ss_pred             HHHHHHHHHHh
Confidence            66555444433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3626|consensus

Probab=97.73  E-value=0.00039  Score=62.82  Aligned_cols=144  Identities=8%  Similarity=-0.036  Sum_probs=96.8

Q ss_pred             HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcc-----
Q psy17628        122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD-----  196 (338)
Q Consensus       122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  196 (338)
                      .+..-...+-+.++++..+.+++...+-++..+...+..+..-|.-|-+.+-+|.++++++.+++++.-+..+..     
T Consensus       115 y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~  194 (735)
T KOG3626|consen  115 YFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELE  194 (735)
T ss_pred             hhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhh
Confidence            334444455566689999999999999999999999999999998888899999999999998887642221111     


Q ss_pred             --------c--------------------chh---hhhchHHHHHHHHHHHhhcc---cccccceeeeeccCCchhhhhH
Q psy17628        197 --------E--------------------KLV---DGLGLLPVASLAIYIIVFSV---GFGPIPGVMMGELFTPDVKGLA  242 (338)
Q Consensus       197 --------~--------------------~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~~p~~~r~~~  242 (338)
                              .                    ...   .......++++++..+..++   ...++..+|+-|...++.-...
T Consensus       195 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplY  274 (735)
T KOG3626|consen  195 VIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLY  274 (735)
T ss_pred             hhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHH
Confidence                    0                    000   01111122222222222222   2334445799999988888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        243 LGVICILGSLIEFVVVKTFDDVE  265 (338)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~  265 (338)
                      .|+.+.+..+|.+++-.+.+...
T Consensus       275 lgi~~~~~~lGPaiGfllgS~~l  297 (735)
T KOG3626|consen  275 LGILYSMAILGPAIGFLLGSFCL  297 (735)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHH
Confidence            99999998888877766666554

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.68  E-value=0.00024  Score=45.34  Aligned_cols=70  Identities=10%  Similarity=0.002  Sum_probs=62.0

Q ss_pred             hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHH
Q psy17628        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYY  189 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~  189 (338)
                      -+.+...+|.+.++.++|..+.+++.+...++..+|.+...++.++.++++.+..+.+...+..+.+++.
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456678899999999999999999999999999999999999999888888999988888888777764

Note that many members are hypothetical proteins.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.49  E-value=0.0016  Score=53.68  Aligned_cols=139  Identities=17%  Similarity=0.094  Sum_probs=81.4

Q ss_pred             HHHhhHHHHHhccCCC--CCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        123 VIFYLKRILIATNSKI--ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       123 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      .....+.+..+.+.+.  ...++......+...++.++.|.++||+|||+.+..+.....++.+...+...         
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---------   91 (338)
T COG0477          21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN---------   91 (338)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence            3344555555554333  35677888888888888899999999999998777776553333333332200         


Q ss_pred             hhhchHHHHHHHHHHHhhcccccccceeeeeccCCc-hhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHh--cccce
Q psy17628        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-DVKGLALGVICI-LGSLIEFVVVKTFDDVERA--FGTGV  272 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~  272 (338)
                       ...+..+......+.+.+ ...+...+++.|.+|. +.|+...+.... ...++..+++.+.+.+...  .+|+.
T Consensus        92 -~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (338)
T COG0477          92 -VGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA  165 (338)
T ss_pred             -chHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence             011222222322333333 2333444788899887 678888887776 4556666666554444433  35555

>KOG2325|consensus

Probab=97.47  E-value=6.1e-05  Score=64.84  Aligned_cols=58  Identities=16%  Similarity=0.186  Sum_probs=45.4

Q ss_pred             eeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHH
Q psy17628        228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT  285 (338)
Q Consensus       228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (338)
                      +.-+|+..++.++++.++....+..+..++|.+........|.++...+.....++..
T Consensus       411 tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~  468 (488)
T KOG2325|consen  411 TLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVA  468 (488)
T ss_pred             HHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHH
Confidence            5668889999999999999999999999999888888888888766555444444433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.44  E-value=0.028  Score=48.63  Aligned_cols=148  Identities=16%  Similarity=0.088  Sum_probs=83.6

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHhhhhcCCc--h-----HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHH
Q psy17628        140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGRR--P-----LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA  212 (338)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (338)
                      ...+..++..+.-++.+++..++-.|.+++  .     -+-++..+++.+.+++.........+  ....+.++.+....
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~--~~~~s~~~lil~y~  402 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGP--SGLVSVWWLVLSYV  402 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCcCHHHHHHHHH
Confidence            345777888888888888888887775444  1     23345555555555444432222110  11223334443333


Q ss_pred             HHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHhcccceeehhhhHHHHHHHH
Q psy17628        213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDD------VERAFGTGVAFGTFAVYCIIGTF  286 (338)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  286 (338)
                      +.. ..-....++..+++....|+...+..+++.......+..++..+.+.      ..+.......|+.++....+...
T Consensus       403 l~s-~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~  481 (498)
T COG3104         403 LQS-FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGI  481 (498)
T ss_pred             HHH-HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence            333 33444556655788889999988988888766666666665555442      22233334456666666665554


Q ss_pred             HHHh
Q psy17628        287 FVYF  290 (338)
Q Consensus       287 ~~~~  290 (338)
                      ....
T Consensus       482 ~~~~  485 (498)
T COG3104         482 LLLL  485 (498)
T ss_pred             HHHH
Confidence            4444

>KOG0637|consensus

Probab=97.42  E-value=0.00012  Score=61.76  Aligned_cols=157  Identities=14%  Similarity=0.114  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh----cCCchHHHHH-hH
Q psy17628        103 KATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRPLLLIS-DI  177 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~~-~~  177 (338)
                      +.++....+.+..++. +..=..|.+.++++.|.+....+..-...-+..++.+++.|..+||    +||||.++.. .+
T Consensus        32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            3344445555555543 5567789999999999998888888888888889999999999995    7888776654 44


Q ss_pred             HHHHHHHHHHHHHHHhhc--ccchh---hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhh-HHHHHHHHHH
Q psy17628        178 CMAICIGALGYYFYLLKL--DEKLV---DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL-ALGVICILGS  251 (338)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~~~~~~~~~  251 (338)
                      ...++.+++++.......  +++..   .-.....++.+.+.-+......+|.= +++.|+...+.+.+ +++....+..
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~a  189 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMA  189 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHH
Confidence            445555555544222111  00000   01112233344455555555666666 78999987777766 8888888888


Q ss_pred             HHHHHHHHHH
Q psy17628        252 LIEFVVVKTF  261 (338)
Q Consensus       252 ~~~~~~~~~~  261 (338)
                      +|+.++-.+.
T Consensus       190 vGnvLGY~~g  199 (498)
T KOG0637|consen  190 VGNVLGYALG  199 (498)
T ss_pred             hcceeeeecc
Confidence            8876664443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.27  E-value=0.0096  Score=50.56  Aligned_cols=56  Identities=11%  Similarity=0.046  Sum_probs=36.1

Q ss_pred             hHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17628        205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF  261 (338)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~  261 (338)
                      |..++.++.-|...+..+.... ..+.|-.|+++|-.++|.....-.+|..++..+.
T Consensus       336 ~ivf~lif~eGLlGGa~YVNtF-~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~  391 (402)
T PF02487_consen  336 WIVFVLIFYEGLLGGASYVNTF-YRISEEVPPEDREFSLGAVSVSDSLGILLAGLLG  391 (402)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3444444444444444444443 5667778899999999998888777776665544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG4686|consensus

Probab=97.17  E-value=0.00015  Score=57.40  Aligned_cols=130  Identities=13%  Similarity=0.046  Sum_probs=88.3

Q ss_pred             HHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHH
Q psy17628        130 ILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPV  208 (338)
Q Consensus       130 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (338)
                      +-.+.+.+..+..++.++++.-.++..+++|++.|| +|-|...++-.....++-++++.-..         ....|.+.
T Consensus        70 fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi---------~~aFw~M~  140 (459)
T KOG4686|consen   70 FKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI---------SHAFWTML  140 (459)
T ss_pred             hhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH---------HHHHHHHH
Confidence            334456666677888888888889999999999996 67666555555555555555443211         22345555


Q ss_pred             HHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628        209 ASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG  269 (338)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (338)
                      ...++++.+.- ........+.+-.|..+.-+.++|+......+|+.+--.+.+++.+..+
T Consensus       141 ~GRF~FGIGgE-SlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~  200 (459)
T KOG4686|consen  141 AGRFLFGIGGE-SLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG  200 (459)
T ss_pred             hhheeeccCch-hhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence            55655554433 2333344688888999999999999999999998877667777766544

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.08  E-value=0.016  Score=50.92  Aligned_cols=116  Identities=12%  Similarity=0.008  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcc-cchh--h--------h--------hchHHHHHH
Q psy17628        151 IQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD-EKLV--D--------G--------LGLLPVASL  211 (338)
Q Consensus       151 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~--------~--------~~~~~~~~~  211 (338)
                      +.++...+..+++++++|.+++.+..........++++..++.... +++.  .        .        ..|...+..
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            3455567789999999999998887777776666666654432111 0000  0        0        001111111


Q ss_pred             HHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER  266 (338)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (338)
                      ...-...+.......|.+++|+++.++-.+..++....++++..+++.+...+.+
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1222222223334567899999999999999999999999999988888877665

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.97  E-value=0.036  Score=47.94  Aligned_cols=171  Identities=11%  Similarity=0.046  Sum_probs=85.7

Q ss_pred             HHHHhhHHHHHhcc-CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628        122 VVIFYLKRILIATN-SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (338)
Q Consensus       122 ~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      ...+..+.++.+.. -+-.-.+.+.....+..++.++..|...||..|.+......+..-++..+...............
T Consensus        20 ~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~   99 (432)
T PF06963_consen   20 MWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSS   99 (432)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            34444555555541 13333345555666777788888899999999998877766555444333332222111110000


Q ss_pred             ---hhhchHHHHHHHHHHHhhcccccccceeeeecc----C--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17628        201 ---DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL----F--TPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTG  271 (338)
Q Consensus       201 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~--p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (338)
                         .......+....+++............+.--|+    .  +++.....++...-+=.+...++|.+.|.+.+..+..
T Consensus       100 ~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~  179 (432)
T PF06963_consen  100 SQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPV  179 (432)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHH
Confidence               011111111111111111111111111222222    2  2334455555555555667889999999988877776


Q ss_pred             eeehhhhHHHHHHHHHHHhhc
Q psy17628        272 VAFGTFAVYCIIGTFFVYFVV  292 (338)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~  292 (338)
                      ....+.++..++...+=++++
T Consensus       180 ~~~~~i~~~N~~S~~vEy~~l  200 (432)
T PF06963_consen  180 IAAIFIAGWNLASVFVEYFLL  200 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666665544444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3810|consensus

Probab=96.96  E-value=0.023  Score=46.72  Aligned_cols=153  Identities=12%  Similarity=0.109  Sum_probs=81.8

Q ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCC--CCcchhhHHHHHHHHHHHHHHHHhhhhcCC
Q psy17628         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKI--ISPNYGQNIVGFIQVIMTFFSSLLVDKAGR  168 (338)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr  168 (338)
                      ++.+..++|..     ....++.....+|++-...|...+-++..-++  .-.|..=.+..+.++++.+..|.+.-.+.|
T Consensus       226 ~l~~~y~np~l-----l~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r  300 (433)
T KOG3810|consen  226 DLQECYSNPRL-----LKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNR  300 (433)
T ss_pred             HHHHHhcCchh-----hhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccch
Confidence            45556666643     33334444445557777777766666553111  112344455666677788888888777766


Q ss_pred             chHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHH
Q psy17628        169 RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI  248 (338)
Q Consensus       169 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  248 (338)
                      ..-++++......+..++..    .      .+.+.|+......++...+........ .-+++....+.-|...|+..+
T Consensus       301 ~g~~ll~~~s~~~agllf~m----~------~t~~Iw~~Ya~yvlfr~~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTF  369 (433)
T KOG3810|consen  301 WGDLLLAVGSAVQAGLLFIM----A------QTQHIWVCYAGYVLFRVIYQLTITIAT-FQIARNLSSELFGLVFGINTF  369 (433)
T ss_pred             hhHHHHHHHHHHhhhhhhhh----h------cccceehhhhhHHHHHhhHhhhhhHHH-HHHHHhhhhhhheeeeehHHH
Confidence            64433332222222111111    1      123455666666666655555444443 344555566667888888777


Q ss_pred             HHHHHHHHHHH
Q psy17628        249 LGSLIEFVVVK  259 (338)
Q Consensus       249 ~~~~~~~~~~~  259 (338)
                      +.-+...+...
T Consensus       370 vAl~lQsilT~  380 (433)
T KOG3810|consen  370 VALILQSILTL  380 (433)
T ss_pred             HHHHHHHhheE
Confidence            76665554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.95  E-value=0.0068  Score=51.15  Aligned_cols=107  Identities=21%  Similarity=0.185  Sum_probs=64.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHH-HHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcc
Q psy17628        142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA-ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV  220 (338)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                      +...++..+...+.+++.|.++|+.|+||.......... ++.+.+.+.   .      +.+..+..++++.+...++..
T Consensus        61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i---~------~~s~~~~~l~~~il~~i~~~~  131 (438)
T COG2270          61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI---P------PGSYLLLLLLFLILASIGFEF  131 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh---C------CCchHHHHHHHHHHHHHhcch
Confidence            445666777778888999999999998776655444333 333333332   0      011233334444444444443


Q ss_pred             cccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHH
Q psy17628        221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVV  258 (338)
Q Consensus       221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~  258 (338)
                      ... ...+++.+..+++.-++..++....+.+|+.+.-
T Consensus       132 s~V-fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~l  168 (438)
T COG2270         132 SNV-FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILL  168 (438)
T ss_pred             hhe-ehhhHhhhhcCccccCcccccccccccccchHHH
Confidence            333 3337888888887778888877777777765443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.88  E-value=0.03  Score=44.19  Aligned_cols=20  Identities=10%  Similarity=0.389  Sum_probs=13.2

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhh
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFL   38 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~   38 (338)
                      ||+++.+.   +++..+..++..
T Consensus        40 W~~I~si~---~lL~~IpLIly~   59 (267)
T PF07672_consen   40 WQWILSIF---ILLIFIPLILYI   59 (267)
T ss_pred             HHHHHHHH---HHHHHHHHHHHH
Confidence            99999999   555555333333

>KOG1237|consensus

Probab=96.73  E-value=0.12  Score=46.57  Aligned_cols=159  Identities=13%  Similarity=0.118  Sum_probs=96.1

Q ss_pred             HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHHHHHHHHHHHHHHhhccc--------ch
Q psy17628        129 RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDE--------KL  199 (338)
Q Consensus       129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  199 (338)
                      ++...++.+...+...............+++++++|. +||-+.+.++.++..++.+++...........        ..
T Consensus        63 ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~  142 (571)
T KOG1237|consen   63 YLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGN  142 (571)
T ss_pred             HHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCC
Confidence            3334446555566666666677777888999999996 58889999998888888776665543332110        00


Q ss_pred             h-hhhc----hHHHHHHHHHHHhhcccccccceeeeeccCCc----hhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17628        200 V-DGLG----LLPVASLAIYIIVFSVGFGPIPGVMMGELFTP----DVK--GLALGVICILGSLIEFVVVKTFDDVERAF  268 (338)
Q Consensus       200 ~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~----~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (338)
                      . ....    ......+.+...+.+ +.-+....+-+|.++.    +.+  ...+...++..+.|..++..+..+.-++.
T Consensus       143 ~c~~~s~~q~~~~~~~l~lia~G~g-g~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~  221 (571)
T KOG1237|consen  143 VCESPSKLQLAVLYGALYLIALGAG-GIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV  221 (571)
T ss_pred             cccCcchHHHHHHHHHHHHheeccC-CCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            0 0011    112222222222222 2233333677888872    222  35666777777888877777777777888


Q ss_pred             ccceeehhhhHHHHHHHHHH
Q psy17628        269 GTGVAFGTFAVYCIIGTFFV  288 (338)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~  288 (338)
                      +|...|.+..++..++.++.
T Consensus       222 ~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  222 GWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             cceeeccHHHHHHHHHHHHH
Confidence            99888877776666555443

>KOG3098|consensus

Probab=96.68  E-value=0.032  Score=48.39  Aligned_cols=119  Identities=18%  Similarity=0.023  Sum_probs=68.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHhhhh---cCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc------hhhhhchHHHHHHH
Q psy17628        142 NYGQNIVGFIQVIMTFFSSLLVDK---AGRRPLLLISDICMAICIGALGYYFYLLKLDEK------LVDGLGLLPVASLA  212 (338)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~g~l~d~---~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  212 (338)
                      +......+++.+++....+.+.+|   +||++.+.++..+..+..++.......+.+-.+      ..........++..
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            444556677777777778888764   788999888887777776655443222211000      00011223334444


Q ss_pred             HHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy17628        213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFD  262 (338)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~  262 (338)
                      +.+.+-+.... ..+.++....| +.|..+.++.-+-..++..++-...+
T Consensus       362 l~G~~D~~~~t-~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  362 LLGFGDACFNT-QRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HHhhHHHHHHH-HHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            44444443333 33367777774 56888888877777776655544443

>TIGR01272 gluP glucose/galactose transporter

Probab=96.67  E-value=0.0023  Score=53.08  Aligned_cols=79  Identities=9%  Similarity=-0.103  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------------cc
Q psy17628        206 LPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA----------------FG  269 (338)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~  269 (338)
                      ..++..++.+.+.+....... .+++++.|++.+++.+++...+..+|..++|.+.+.+...                ..
T Consensus        12 ~~l~~~f~~g~G~~~lq~~~n-~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~   90 (310)
T TIGR01272        12 LFLGALFVLASGLTILQVAAN-PYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAK   90 (310)
T ss_pred             HHHHHHHHHHhhHHHHHhhHH-HHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHH
Confidence            344555555666665555555 7899999999999999999999999999999999877632                24


Q ss_pred             cceeehhhhHHHHHHH
Q psy17628        270 TGVAFGTFAVYCIIGT  285 (338)
Q Consensus       270 ~~~~~~~~~~~~~~~~  285 (338)
                      |+.++++.+.+..+..
T Consensus        91 ~~~~yl~ia~~~~~~~  106 (310)
T TIGR01272        91 VHTPYLLLAGALAVLA  106 (310)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6667765555544444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3762|consensus

Probab=96.62  E-value=0.0017  Score=56.30  Aligned_cols=63  Identities=10%  Similarity=0.130  Sum_probs=53.5

Q ss_pred             chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHH
Q psy17628        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI  181 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  181 (338)
                      ....+...++.+.+++|+++.+.+.++..--+..+++.+++|+++||+.+|+.++++..+..+
T Consensus        26 ~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v   88 (618)
T KOG3762|consen   26 RFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV   88 (618)
T ss_pred             cccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            355677888999999999999999999999999999999999999999877776666554443

>KOG3098|consensus

Probab=96.54  E-value=0.039  Score=47.86  Aligned_cols=111  Identities=14%  Similarity=0.072  Sum_probs=85.8

Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHH
Q psy17628        137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII  216 (338)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (338)
                      ++........+.+....+.+++.+.+.|+.|.|..+.++..........+...             +.+..++.-.+.|+
T Consensus        48 ~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-------------N~y~~yfssallG~  114 (461)
T KOG3098|consen   48 SAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-------------NSYYLYFSSALLGF  114 (461)
T ss_pred             CCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-------------chHHHHHHHHHhhh
Confidence            33333344778888889999999999999999999999987777766555443             45667777788888


Q ss_pred             hhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17628        217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF  261 (338)
Q Consensus       217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~  261 (338)
                      +.+..+..-. .+++|..+.+.+.+..++...+...+.+++....
T Consensus       115 Gaallw~GqG-~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  115 GAALLWTGQG-GYLTSNSTRETIERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             hHHheecccc-eehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence            8887776666 8999999999999999988888777766665443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.47  E-value=0.0064  Score=52.00  Aligned_cols=116  Identities=11%  Similarity=-0.009  Sum_probs=74.3

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch---hhhhHHHHH
Q psy17628        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD---VKGLALGVI  246 (338)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~  246 (338)
                      +.++.+.++..++.+++.+........   .........+.+.+...+.+..=.++. ++.+|.++++   .|..+....
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~---~~~~~~~~~~gL~lia~G~G~~K~ni~-~~~~dq~~~~~~~~~~~~F~~f   77 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLP---SGIQLGLFYIGLALIAVGTGGIKPNIS-PFGADQYDEDDDSRRDSFFNWF   77 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC---------CHHHHHHHHHHHHHHCCHHHHH-HHHHHCSSTTTTTHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhh---hhHHHHHHHHHHHHHHhccccccccHH-HHHHHHhcccchhhhhhhHHHH
Confidence            456677777788877755543222110   011223445555555666555445555 7889988765   457777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHH
Q psy17628        247 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  289 (338)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (338)
                      +...++|+.++....+++.++.+|...|.+.++..+++.+..+
T Consensus        78 Y~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   78 YWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888777766666654433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.17  E-value=0.065  Score=46.55  Aligned_cols=40  Identities=8%  Similarity=-0.022  Sum_probs=32.1

Q ss_pred             eeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628        228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA  267 (338)
Q Consensus       228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (338)
                      ++-+.+.++..-||.|.+.|.+.++|+..-..+.-+++|.
T Consensus       428 AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  428 AFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             HHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            7778888999999999999999999987665555555553

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1479|consensus

Probab=96.07  E-value=0.57  Score=39.96  Aligned_cols=29  Identities=17%  Similarity=-0.010  Sum_probs=18.0

Q ss_pred             HHHHHHHHHhhhcchHHHHHhhHHHHHhc
Q psy17628        106 IVIVGLLCFLSFSGINVVIFYLKRILIAT  134 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (338)
                      ...+++........++.+.+-.+++..+.
T Consensus        20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~   48 (406)
T KOG1479|consen   20 YLIFLLLGIGTLLPWNMFITASDYYYYRF   48 (406)
T ss_pred             HHHHHHHhcccccchHhhhccHHHHHhhc
Confidence            33344444444556778888888887776

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.03  E-value=0.02  Score=49.85  Aligned_cols=54  Identities=7%  Similarity=-0.002  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHH
Q psy17628        205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (338)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (338)
                      +..++...+++...+.. ......+..+..++++|-.+..+......+|-.++..
T Consensus       373 ~~~~~~~~l~gltnGy~-~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~  426 (437)
T TIGR00939       373 AYFIILMLLFGFSNGYL-GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAV  426 (437)
T ss_pred             HHHHHHHHHHHHhhhHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555444332 3333367788888888877777766666666555544

>KOG4332|consensus

Probab=95.95  E-value=0.0085  Score=47.38  Aligned_cols=55  Identities=11%  Similarity=-0.106  Sum_probs=42.8

Q ss_pred             HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628        129 RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI  183 (338)
Q Consensus       129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  183 (338)
                      ++.+..|+...+++.+........++...+.|-++||-|||+..+...+...+++
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC  116 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC  116 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH
Confidence            3445668888888888888778888888999999999999998766655555544

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.71  E-value=0.0021  Score=53.28  Aligned_cols=113  Identities=12%  Similarity=0.006  Sum_probs=1.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhc-CCchHHHHHhHHHHHHHHHHHHHHHHhhcc-cchhhhhchHHHHHHHHHHHhhccc
Q psy17628        144 GQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFYLLKLD-EKLVDGLGLLPVASLAIYIIVFSVG  221 (338)
Q Consensus       144 ~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                      ....++++..+|..+.++..-+. .+|.+. +..+.=.+...++.........+ .+..-.+.+..++...++++..+. 
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy-  264 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY-  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch-
Confidence            45578888889988877643211 233333 22222221111111110100000 000011223344444444444332 


Q ss_pred             ccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHH
Q psy17628        222 FGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVV  258 (338)
Q Consensus       222 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~  258 (338)
                      .......+.++..+++.|..+-.+....-.+|-.+|.
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs  301 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGS  301 (309)
T ss_dssp             --HHHH-------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334446778888888887666665555555444443

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=95.64  E-value=0.72  Score=40.22  Aligned_cols=129  Identities=10%  Similarity=-0.076  Sum_probs=83.2

Q ss_pred             CCCcchhhHHHHH-HHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcc-cch--------hhhh-c--
Q psy17628        138 IISPNYGQNIVGF-IQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD-EKL--------VDGL-G--  204 (338)
Q Consensus       138 ~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~-~--  204 (338)
                      +....++-...-+ ++++..++..++.+++.|.+++.........+.+++++..++.... +++        ...+ .  
T Consensus        60 ae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~  139 (509)
T COG3202          60 AESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLK  139 (509)
T ss_pred             chhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccce
Confidence            3444444444444 5667788899999999999999888888888878777766532211 000        0001 1  


Q ss_pred             --------hHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        205 --------LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER  266 (338)
Q Consensus       205 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (338)
                              |...+...+.-...+....-+.|..++|++..++-.+.+++.+..++++..+++.+..++..
T Consensus       140 ~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         140 WFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             eeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                    22222222222222333334556788999999999999999999999998888887776654

>PRK03612 spermidine synthase; Provisional

Probab=95.51  E-value=0.27  Score=44.08  Aligned_cols=46  Identities=11%  Similarity=0.010  Sum_probs=28.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-HhcccceeehhhhHHHHHHH
Q psy17628        240 GLALGVICILGSLIEFVVVKTFDDVE-RAFGTGVAFGTFAVYCIIGT  285 (338)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  285 (338)
                      +...|-.+....+|+.+++.+.+.++ ...|.....++.+.+.++++
T Consensus       144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            45567777777788888877776554 35565444444444444444

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.22  E-value=0.15  Score=43.50  Aligned_cols=132  Identities=8%  Similarity=0.039  Sum_probs=62.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhccccc
Q psy17628        144 GQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFG  223 (338)
Q Consensus       144 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                      ....-.+-.++..+++.++.+|+.-+.-.....+++.+++++.++.            .+.+.-++...+.+...+.+-.
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~------------~~v~~~l~Gv~las~ssg~GE~  131 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS------------PSVWVRLLGVVLASLSSGLGEV  131 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec------------cchhHHHHHHHHHhhhhhhhHH
Confidence            3334445566667778888898765444445555666666655442            1223344444444444444433


Q ss_pred             ccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ceeehhhhHHHHHHHHHHHhhccC
Q psy17628        224 PIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT--GVAFGTFAVYCIIGTFFVYFVVPE  294 (338)
Q Consensus       224 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  294 (338)
                      ...  -....+++..    .+-.....+.++.+++.....+.. .|+  +..+.....+.++..+..++.+|.
T Consensus       132 tfL--~lt~~y~~~~----l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  132 TFL--SLTHFYGKSS----LSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             HHH--HHHHhcCccc----cccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            322  2334555431    222222222333344443332323 343  335555555555444444444553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=95.12  E-value=0.18  Score=43.94  Aligned_cols=55  Identities=13%  Similarity=0.100  Sum_probs=30.0

Q ss_pred             hhcchHHHHHhhHHHHHh--ccCCCCCcchhhH---HHHHHHHHHHHHHHHhhh-----hcCCchHHHHH
Q psy17628        116 SFSGINVVIFYLKRILIA--TNSKIISPNYGQN---IVGFIQVIMTFFSSLLVD-----KAGRRPLLLIS  175 (338)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~---~~~~~~~~~~~~~g~l~d-----~~grr~~~~~~  175 (338)
                      +.........-.|.++++  .+.|-++.+....   .+++     -+++..+.|     |+||||..++-
T Consensus        12 QGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSl-----KlLWaPiVDs~y~~~~GRRKSWiiP   76 (544)
T PF13000_consen   12 QGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSL-----KLLWAPIVDSVYSKRIGRRKSWIIP   76 (544)
T ss_pred             cCcccccccccchhhhccccCCCChhHheeeeeeechhHH-----HHhhhhhhhhhcccccCCcchhhhH
Confidence            333333333567888887  4555555443322   2222     244555544     89999987654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3574|consensus

Probab=95.03  E-value=0.59  Score=39.47  Aligned_cols=41  Identities=10%  Similarity=0.041  Sum_probs=33.8

Q ss_pred             eeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17628        228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF  268 (338)
Q Consensus       228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (338)
                      +..+.+.|+..-|+.|.+.|...++|+..-..+...+.|..
T Consensus       392 af~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l  432 (510)
T KOG3574|consen  392 AFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL  432 (510)
T ss_pred             HHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence            67788899999999999999999999877666666666543

>KOG3574|consensus

Probab=94.65  E-value=0.22  Score=41.90  Aligned_cols=58  Identities=16%  Similarity=0.101  Sum_probs=35.3

Q ss_pred             HhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhh-----hcCCchHHHH
Q psy17628        114 FLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD-----KAGRRPLLLI  174 (338)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~grr~~~~~  174 (338)
                      ..+...+.... ..|.+++..|.|-++.+.....+.=  .---+++..+.|     |+|||+..++
T Consensus        41 llQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvv  103 (510)
T KOG3574|consen   41 LLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVV  103 (510)
T ss_pred             HHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceee
Confidence            33444444444 8888888777776665544332211  122467788888     9999987654

>KOG1479|consensus

Probab=94.60  E-value=0.2  Score=42.55  Aligned_cols=49  Identities=6%  Similarity=-0.113  Sum_probs=27.2

Q ss_pred             chHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHH
Q psy17628        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI  253 (338)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~  253 (338)
                      .++.++...+++...+ ....+...+.++..|++++-.+-.+....-..|
T Consensus       343 ~~~~~~l~~~lglsnG-Yltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~G  391 (406)
T KOG1479|consen  343 DGWFIFLMSLLGLSNG-YLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGG  391 (406)
T ss_pred             chHHHHHHHHHHhccc-hHhhheehhcCCCCChHHHHHHHHHHHHHHHHH
Confidence            3444555555554433 334455578888888877765555544444333

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.15  E-value=1.7  Score=38.06  Aligned_cols=27  Identities=11%  Similarity=0.075  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHhhhhcCCchHHHHH
Q psy17628        149 GFIQVIMTFFSSLLVDKAGRRPLLLIS  175 (338)
Q Consensus       149 ~~~~~~~~~~~g~l~d~~grr~~~~~~  175 (338)
                      .+..++..+..-.+..|+..|.-+..+
T Consensus        55 ~v~~l~~~~~~~~~~~~i~~~~Ri~~~   81 (437)
T TIGR00939        55 QLPSLLFNSLNLFLIFRIPVTVRLLGG   81 (437)
T ss_pred             HHHHHHHHHHHHHHhhccCccchhHHH
Confidence            333344444444555555543333334

>KOG0637|consensus

Probab=92.76  E-value=0.12  Score=44.36  Aligned_cols=35  Identities=17%  Similarity=0.105  Sum_probs=25.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhH
Q psy17628        143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI  177 (338)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~  177 (338)
                      +-..+..+...+.+...-++.||+|-|+.+..+..
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~  370 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVN  370 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhH
Confidence            44556777778888999999999995554444433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=91.74  E-value=9  Score=34.02  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=27.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHH
Q psy17628        143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI  181 (338)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  181 (338)
                      ......++..++..++.+++.+|+|-+....+.-++..+
T Consensus       307 ~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       307 DFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            344455666666777779999999988777666555544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG4332|consensus

Probab=90.58  E-value=1.4  Score=35.47  Aligned_cols=100  Identities=5%  Similarity=0.020  Sum_probs=58.3

Q ss_pred             chhhHHHHHHHHHHHHHHHHhhhhcCCc--hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhc
Q psy17628        142 NYGQNIVGFIQVIMTFFSSLLVDKAGRR--PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFS  219 (338)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (338)
                      +.+...+.+.+++|+-+..++..|-..|  ..+.+..++......+...... ..+.    .......++.++++-.+.+
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~-vsP~----kes~~~s~i~F~~~E~cvG  359 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS-VSPS----KESPSESLIGFCLFEACVG  359 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc-cCCC----cCCchHHHHHHHHHHHHHh
Confidence            5667777777888887777776654333  3444444444443333222211 1111    1223334666777777777


Q ss_pred             ccccccceeeeeccCCchhhhhHHHHHH
Q psy17628        220 VGFGPIPGVMMGELFTPDVKGLALGVIC  247 (338)
Q Consensus       220 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~  247 (338)
                      ..+..+. -+-++..|.+.|++.+.+..
T Consensus       360 lfwPSim-kmRsqyIPEearstimNfFR  386 (454)
T KOG4332|consen  360 LFWPSIM-KMRSQYIPEEARSTIMNFFR  386 (454)
T ss_pred             hcchHHH-HHHHhhCCHHHHhhhhhhee
Confidence            7776665 56778889999987766543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=88.31  E-value=6.3  Score=33.22  Aligned_cols=69  Identities=10%  Similarity=0.008  Sum_probs=44.6

Q ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh
Q psy17628         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK  165 (338)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  165 (338)
                      .++.+.+++    +++.............+.....|.|.+..+ + .....|++.+...+..++|+.+..++..+
T Consensus       236 a~~~i~~d~----ril~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  236 AWRAILSDP----RILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             HHHHHHcCc----hhHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            345555554    355555566666665566667778876521 1 23346888888899999999888766554

>PRK10697 DNA-binding transcriptional activator PspC; Provisional

Probab=86.97  E-value=0.98  Score=31.03  Aligned_cols=31  Identities=6%  Similarity=0.131  Sum_probs=19.0

Q ss_pred             hhHHHhhhhhhh--HHHHHHHHHhhhccCCchh
Q psy17628         16 YEDYTIICLSCL--VIPVLNLLVFLIVAPETPV   46 (338)
Q Consensus        16 Wr~~f~i~~~~~--~~~~~~~~~~~~~~pesp~   46 (338)
                      -|.+|++...++  .+++++-+++++.+|+.|.
T Consensus        36 VRl~~vl~~~~~~~~~~~~~Yi~l~~~lp~~P~   68 (118)
T PRK10697         36 VRIIVVLSIFFGLFVFTLVAYIILSFALDPMPD   68 (118)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhccCCcc
Confidence            577766652222  2345556677888888875

>KOG2601|consensus

Probab=86.43  E-value=12  Score=31.90  Aligned_cols=47  Identities=9%  Similarity=0.006  Sum_probs=29.9

Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628        137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI  183 (338)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  183 (338)
                      |.........+-+...++...+.|...|+..|+|++.....+.-++.
T Consensus        61 sl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv  107 (503)
T KOG2601|consen   61 SLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSV  107 (503)
T ss_pred             eehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHH
Confidence            33344444455555666667777888899999998776655443333

>KOG2881|consensus

Probab=85.85  E-value=3.9  Score=32.32  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHH
Q psy17628        150 FIQVIMTFFSSLLVDKAGRRPLLLISDICMAIC  182 (338)
Q Consensus       150 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~  182 (338)
                      ++..+..+.+-+++.|+.-|.+.+.+..++.+.
T Consensus       251 lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F  283 (294)
T KOG2881|consen  251 LCTGLAVIGGKYLASKISVRTVTLIGGILFIIF  283 (294)
T ss_pred             HHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence            333344444557788999888887775555443

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=83.55  E-value=3.6  Score=29.80  Aligned_cols=90  Identities=16%  Similarity=0.220  Sum_probs=43.3

Q ss_pred             HhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhh
Q psy17628        161 LLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG  240 (338)
Q Consensus       161 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  240 (338)
                      .++||+-||..+..|. -.++++..+..+++.....  ..+-+.+..++..   .++++.+...+.|..++--.+++..|
T Consensus        56 ~Vs~RM~rRm~~~~Gi-P~~lG~~~f~~~y~l~~~~--~~dvP~~~~~~~S---~~~Fg~gllGisYGilSaSWD~~r~G  129 (153)
T PF11947_consen   56 VVSNRMLRRMAVFVGI-PTALGVAVFVVFYYLKSRQ--IVDVPPWAVLLVS---LVFFGLGLLGISYGILSASWDPEREG  129 (153)
T ss_pred             HHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHhcc--ccccCchHHHHHH---HHHHHHHHHhhhhhhcccccCCCCCC
Confidence            4678887776655543 3334444444433333222  1111222222211   11222222233344555556667789


Q ss_pred             hHHHHHHHHHHHHHHH
Q psy17628        241 LALGVICILGSLIEFV  256 (338)
Q Consensus       241 ~~~~~~~~~~~~~~~~  256 (338)
                      +..|+-.+-.+++-..
T Consensus       130 SllG~~e~~~N~~r~~  145 (153)
T PF11947_consen  130 SLLGWEEFKRNWGRMW  145 (153)
T ss_pred             CcccHHHHHHhHHHHH
Confidence            9999877776665443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.23  E-value=6  Score=26.48  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHhhhhc-CCchHHHHHhHHHHHHH
Q psy17628        150 FIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICI  183 (338)
Q Consensus       150 ~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~  183 (338)
                      +..++.....||+.||| |.++..++.+++.+.+.
T Consensus        53 IsGilVGa~iG~llD~~agTsPwglIv~lllGf~A   87 (116)
T COG5336          53 ISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGA   87 (116)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            44455667788999985 77777666655554443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=83.16  E-value=34  Score=30.69  Aligned_cols=42  Identities=29%  Similarity=0.404  Sum_probs=29.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628        142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI  183 (338)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  183 (338)
                      +......++..++..++++.+.+|+|-+....+.-++..++.
T Consensus       322 G~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~  363 (491)
T PF03219_consen  322 GKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG  363 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence            334555677777777888999999998887776544444433

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK09609 hypothetical protein; Provisional

Probab=82.60  E-value=26  Score=28.89  Aligned_cols=33  Identities=9%  Similarity=0.062  Sum_probs=17.1

Q ss_pred             hhHHHhhhhhhhHHHH-HHHHHhhhccCCchhHHhhc
Q psy17628         16 YEDYTIICLSCLVIPV-LNLLVFLIVAPETPVYLLSK   51 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~-~~~~~~~~~~pesp~~l~~~   51 (338)
                      |...|.+.   +.++. +.+++.+++..-..+|...+
T Consensus        78 ffPgFTLs---a~l~GlI~Glf~~~~fk~~~~~f~~~  111 (312)
T PRK09609         78 YHPYYTLA---AMVYGFIPGIVGWFFFKFGKKFFGKE  111 (312)
T ss_pred             cCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            66666555   44333 33445555555555665443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=82.10  E-value=32  Score=30.60  Aligned_cols=43  Identities=26%  Similarity=0.217  Sum_probs=27.6

Q ss_pred             hHHHHHH-HHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHH
Q psy17628        145 QNIVGFI-QVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALG  187 (338)
Q Consensus       145 ~~~~~~~-~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~  187 (338)
                      ....++. .++...+++.+.+|.|-....++.-+++.++.+++.
T Consensus       327 ~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~lFF  370 (509)
T COG3202         327 QIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGVLFF  370 (509)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4445555 445557788899998887777666665555544433

>TIGR02978 phageshock_pspC phage shock protein C

Probab=81.26  E-value=2  Score=29.76  Aligned_cols=31  Identities=6%  Similarity=0.052  Sum_probs=18.9

Q ss_pred             hhHHHhhhhhhhHH-H-HHHHHHhhhccCCchh
Q psy17628         16 YEDYTIICLSCLVI-P-VLNLLVFLIVAPETPV   46 (338)
Q Consensus        16 Wr~~f~i~~~~~~~-~-~~~~~~~~~~~pesp~   46 (338)
                      .|.+|++...++.. + +++-+++++++|+.|.
T Consensus        31 VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~   63 (121)
T TIGR02978        31 VRILVVSALLFGGGFFVLVAYIALWLLLDKKPI   63 (121)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence            79988887332221 1 2234567788898875

All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.

>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator

Probab=80.92  E-value=2.7  Score=25.06  Aligned_cols=30  Identities=13%  Similarity=0.154  Sum_probs=20.6

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCch
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETP   45 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp   45 (338)
                      +|.+|.+...++..++++-+++++.+|+.|
T Consensus        31 vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~   60 (61)
T PF04024_consen   31 VRLIFVVLTFFTGGGILLYLILWLLLPKEP   60 (61)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence            899998883333335555666778889876

The presumed domain is 60 amino acid residues in length.

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.67  E-value=3.8  Score=27.37  Aligned_cols=36  Identities=14%  Similarity=0.058  Sum_probs=28.8

Q ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628        235 TPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT  270 (338)
Q Consensus       235 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (338)
                      .++.++.+.++-...-.+++.+....+|++++++--
T Consensus        36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~ag   71 (116)
T COG5336          36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAG   71 (116)
T ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            345678888888888888888888999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	338
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		6e-24

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 141/297 (47%), Gaps = 20/297 (6%)
Query: 29  IPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQK 88
           IP L  L+ L   PE+P +L+S+ +++ AE  L  + G N      + E++  LD   +K
Sbjct: 208 IPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG-NTLATQAVQEIKHSLD-HGRK 265
Query: 89  KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIV 148
               + ++     V   ++ V L  F  F GINVV++Y   +     +          IV
Sbjct: 266 TGGRLLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIV 321
Query: 149 GFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPV 208
           G I +  T  + + VDK GR+PL +I  + MAI + +LG  FY            G++ +
Sbjct: 322 GVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--------TQAPGIVAL 373
Query: 209 ASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-- 266
            S+  Y+  F++ +GP+  V++ E+F   ++G AL +      L  + V  TF  +++  
Sbjct: 374 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS 433
Query: 267 ----AFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRT 319
                F  G ++  +    ++   F++  VPETK K+L++++       KK +   T
Sbjct: 434 WLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQTAT 490
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 31/222 (13%), Positives = 75/222 (33%), Gaps = 62/222 (27%)

Query: 7   LYTYVIGSLYEDYTIICLSCLVIP--VLNLL--------VFLIVAPETPVYLLSKKRRKD 56
           L       +++  ++   S   IP  +L+L+        V ++V  +   Y L +K+ K+
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKE 423

Query: 57  AEKSL----LILRGPN---YDIHGEL-------------DELQKELD------I------ 84
           +  S+    L L+      Y +H  +             D +   LD      I      
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 85  --QAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVI---FYLKRIL--IATNSK 137
               ++      ++ +   ++  I         S S +N +    FY   I        +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 138 IIS------PNYGQNIV-----GFIQVIMTFFSSLLVDKAGR 168
           +++      P   +N++       +++ +      + ++A +
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.83
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.74
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.73
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.73
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.66
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.66
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.63
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.63
2xut_A	524	Proton/peptide symporter family protein; transport	99.56
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.5
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.46
2xut_A	524	Proton/peptide symporter family protein; transport	99.28
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.22

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=7.2e-32  Score=236.88  Aligned_cols=279  Identities=27%  Similarity=0.467  Sum_probs=203.1

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||+.+.+.    .++.++.++..+++||||||+..+++.+++++.+++...++...++..+. ++...++ ++.......
T Consensus       199 ~~~~~~~~----~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~  272 (491)
T 4gc0_A          199 WRYMFASE----CIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEI-KHSLDHG-RKTGGRLLM  272 (491)
T ss_dssp             HHHHHHTT----HHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHTTHHHH
T ss_pred             hHHHhhhh----hhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHH-HHHHHhh-hhhhhHHHH
Confidence            88888888    45555577788899999999999999999999988876543222221111 1111111 111111122


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLIS  175 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~  175 (338)
                      +    ..++.........+.++.+.+....|.+.+.+..+.+..+........++...++.++++++.||+|||+.++.+
T Consensus       273 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~  348 (491)
T 4gc0_A          273 F----GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG  348 (491)
T ss_dssp             S----CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHH
T ss_pred             h----cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccc
Confidence            2    223455566666677777888899999999988887777777778888899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHH
Q psy17628        176 DICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF  255 (338)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~  255 (338)
                      ...+.++.+.++.......        ..+..++...++..+++.++.++.+.+.+|++|++.|++++|+.+..+++++.
T Consensus       349 ~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~  420 (491)
T 4gc0_A          349 ALGMAIGMFSLGTAFYTQA--------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY  420 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccc--------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence            8888888776665432221        22334444555555666777788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHH------hcccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHHHHhccccc
Q psy17628        256 VVVKTFDDVER------AFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKK  312 (338)
Q Consensus       256 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (338)
                      +++.+.+.+.+      ..++...+++++++++++.++.++++||||++++||+++..+++.+
T Consensus       421 i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~  483 (491)
T 4gc0_A          421 FVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK  483 (491)
T ss_dssp             HHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence            98888776543      3455567888888999998888899999999999998877665433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.83  E-value=3.3e-21  Score=167.25  Aligned_cols=256  Identities=12%  Similarity=0.063  Sum_probs=161.9

Q ss_pred             eechhhhhhhcch-------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHH
Q psy17628          3 VSGILYTYVIGSL-------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGEL   75 (338)
Q Consensus         3 ~~G~~~~~~i~~~-------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~   75 (338)
                      .+|.++++.++..       ||+.|++.   +++.++..++.++++||+|+....+.+.+.          . .+.+.+.
T Consensus       165 ~~g~~~g~~~~~~l~~~~g~w~~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~  230 (451)
T 1pw4_A          165 NVGGGIPPLLFLLGMAWFNDWHAALYMP---AFCAILVALFAFAMMRDTPQSCGLPPIEEY----------K-NDYPDDY  230 (451)
T ss_dssp             HHHHTSHHHHHHHHHHHTCCSTTCTHHH---HHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------C-CC-----
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHHHhhccCCHhhcCCCChhhh----------c-ccccccc
Confidence            3455555555533       99999999   788777677777889999865322111110          0 0000000


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHH
Q psy17628         76 DELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVI  154 (338)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~  154 (338)
                      +  ++..++....+...++.++++.     ++...+..+...........+.|.++++ .|++..+.+.......++.++
T Consensus       231 ~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  303 (451)
T 1pw4_A          231 N--EKAEQELTAKQIFMQYVLPNKL-----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP  303 (451)
T ss_dssp             ----------CCTHHHHHHTSSCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHH
T ss_pred             h--hhhhcccccccchHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            0  0000011111112344555442     2222222222333456677889999888 588998899999999999999


Q ss_pred             HHHHHHHhhhhc--CCchHHHHHhHHHH-HHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeee
Q psy17628        155 MTFFSSLLVDKA--GRRPLLLISDICMA-ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMG  231 (338)
Q Consensus       155 ~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      +.++.|+++||+  |||+.+..+..+.. ++.+++...          ...+.+.......+.+.+.+.... ....++.
T Consensus       304 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  372 (451)
T 1pw4_A          304 GTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----------PAGNPTVDMICMIVIGFLIYGPVM-LIGLHAL  372 (451)
T ss_dssp             HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----------CTTCHHHHHHHHHHHHHHHTHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----------cccCHHHHHHHHHHHHHHHhchHH-HHHHHHH
Confidence            999999999999  99998887766555 333322211          001223333344444444443333 3337889


Q ss_pred             ccCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHh
Q psy17628        232 ELFTPDVKGLALGVICILGSL-IEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF  290 (338)
Q Consensus       232 e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (338)
                      |.+|++.|++++|+.+....+ +..+++.+.+.+.+..|+...+++.+++.+++.++.++
T Consensus       373 ~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          373 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999 99999999999999989888888777777776655544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.74  E-value=4.3e-17  Score=140.78  Aligned_cols=173  Identities=13%  Similarity=0.015  Sum_probs=121.3

Q ss_pred             hHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHH-HHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcC
Q psy17628         90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG  167 (338)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g  167 (338)
                      .+++++++++..+...+. .    +...........+.|.+ +++. |++..+.+.......++.+++.++.|+++||+|
T Consensus       249 ~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~  323 (438)
T 3o7q_A          249 ASLSRLARIRHWRWAVLA-Q----FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFA  323 (438)
T ss_dssp             HHHHHHTTCSHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hhHHHHHhChHHHHHHHH-H----HHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456677777643322222 1    11222245666788888 8777 999999999999999999999999999999999


Q ss_pred             CchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHH
Q psy17628        168 RRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVIC  247 (338)
Q Consensus       168 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  247 (338)
                      ||+.+..+.++.+++.+++...             ..........+.+++.+... +..+++..|.+|++ |+++.++..
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~  388 (438)
T 3o7q_A          324 PHKVLAAYALIAMALCLISAFA-------------GGHVGLIALTLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV  388 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHTTHH-HHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHc-------------CCcHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccc-ccchhhHHH
Confidence            9999988887777766554432             11122333344444544443 44447778999976 888888776


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcc-cceeehhhhHHHHH
Q psy17628        248 ILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCII  283 (338)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  283 (338)
                       .+.+++.++|.+.+.+.+..| ++..+.+.+++.++
T Consensus       389 -~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          389 -MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_dssp             -HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence             677999999999999999998 87777665444333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.73  E-value=1.1e-17  Score=144.98  Aligned_cols=182  Identities=11%  Similarity=0.015  Sum_probs=141.0

Q ss_pred             HHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHH
Q psy17628        106 IVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA  185 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  185 (338)
                      +....+..+...........+.|.+.++. .+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~  108 (451)
T 1pw4_A           30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF  108 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            33333333333333445667788888888 89999999999999999999999999999999999999999999888887


Q ss_pred             HHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628        186 LGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE  265 (338)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (338)
                      +++....        ..+.+..++...+.+.+.+....... ++++|.+|++.|++++++.+....+|..+++.+.+.+.
T Consensus       109 ~~~~~~~--------~~~~~~l~~~~~l~G~~~~~~~~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          109 MGFVPWA--------TSSIAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHCHHH--------HSSSSHHHHHHHHHHHHHHHTHHHHH-HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHhhhhc--------cccHHHHHHHHHHHHHHhhhccchHH-HHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7662110        01234445555566665554444444 89999999999999999999999999999999999888


Q ss_pred             Hhcc-cceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628        266 RAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       266 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      +..+ |++.+++.+++.++..++.++.+||+++
T Consensus       180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            8898 9999999888887777777777777644

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.73  E-value=1.2e-18  Score=149.46  Aligned_cols=162  Identities=12%  Similarity=0.115  Sum_probs=106.0

Q ss_pred             HHHhhHHHHHhc-c---CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        123 VIFYLKRILIAT-N---SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       123 ~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ...+.|.++.+. +   .+....+....+..++.+++.++.|+++||+|||+++..+..+.+++.+.+...         
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---------  309 (417)
T 2cfq_A          239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---------  309 (417)
T ss_dssp             HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---------
T ss_pred             HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---------
Confidence            334456555443 2   123334566667777888999999999999999999888776666654433221         


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhcccceeehhh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVI-CILGSLIEFVVVKTFDDVERAFGTGVAFGTF  277 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (338)
                         .+.+..++...+.+.+..... +..+.+++|.+|++.|+++.++. +....+++.++|.+.+.+.+..|+...|.+.
T Consensus       310 ---~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~  385 (417)
T 2cfq_A          310 ---TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL  385 (417)
T ss_dssp             ---CSHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence               011222222222222222111 22246889999999999999985 7788899999999999998888876777777


Q ss_pred             hHHHHHHHHHHHhhccCCCC
Q psy17628        278 AVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~  297 (338)
                      +++.+++.++.++..||+++
T Consensus       386 ~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          386 GLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHHHHHHHHHhhhcCCCc
Confidence            77777776665555565443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.66  E-value=1.6e-16  Score=137.11  Aligned_cols=161  Identities=10%  Similarity=-0.032  Sum_probs=125.5

Q ss_pred             chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      .........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.++.+.++.+++.++......       
T Consensus        41 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-------  113 (438)
T 3o7q_A           41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------  113 (438)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-------
Confidence            3456777788888889999999999999999999999999999999999999999999999888877633211       


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc--------
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE-RAFG--------  269 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------  269 (338)
                        ..+.+..++...+.+.+.+....... ++++|.+|++.|+.++++.+....+|..+++.+.+.+. +..+        
T Consensus       114 --~~~~~~l~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~  190 (438)
T 3o7q_A          114 --IMNYTLFLVGLFIIAAGLGCLETAAN-PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD  190 (438)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHH
T ss_pred             --cccHHHHHHHHHHHHhhHHHhhhhHH-HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence              11234445556666666655544444 89999999999999999999999999999999998887 4443        


Q ss_pred             -----------------cceeehhhhHHHHHHHHHHH
Q psy17628        270 -----------------TGVAFGTFAVYCIIGTFFVY  289 (338)
Q Consensus       270 -----------------~~~~~~~~~~~~~~~~~~~~  289 (338)
                                       |++.+++.+.+..+..++.+
T Consensus       191 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          191 KMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                             67777666666555554433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.66  E-value=2.7e-15  Score=131.49  Aligned_cols=170  Identities=11%  Similarity=0.005  Sum_probs=111.1

Q ss_pred             HHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHH-----HHhHHHHHHHHHHHHHHHHhhc
Q psy17628        122 VVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL-----ISDICMAICIGALGYYFYLLKL  195 (338)
Q Consensus       122 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~  195 (338)
                      ....+.+.+.++. +.+..+.+.......++.+++.++.+++.||+|||+...     .+..+.+++.+++.........
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (491)
T 4aps_A          301 QGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT  380 (491)
T ss_dssp             GGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred             hccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3444556666654 666677888899999999999999999999999987654     5555555555544443211110


Q ss_pred             ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628        196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFG  275 (338)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (338)
                      .   .....+.......+.+.+.+... +..+.++.|.+|++.|++++|+.+....++..+++.+.+.+.+ .++...+.
T Consensus       381 ~---~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~  455 (491)
T 4aps_A          381 S---GKVSPLWLVGSWALVILGEMLIS-PVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFS  455 (491)
T ss_dssp             C---TTCCTHHHHHHHHHHHHHHHTTT-THHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHH
T ss_pred             C---CCccHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            0   01123334444445554444433 3344789999999999999999999999999999998887654 35556777


Q ss_pred             hhhHHHHHHHHHHHhhccCCC
Q psy17628        276 TFAVYCIIGTFFVYFVVPETK  296 (338)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      +.+++++++.++.+++.++.+
T Consensus       456 ~~~~~~~~~~~~~~~~~~~~~  476 (491)
T 4aps_A          456 YFGLGSVVLGIVLVFLSKRIQ  476 (491)
T ss_dssp             HTHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            777777777766666555543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.63  E-value=1.4e-16  Score=134.68  Aligned_cols=166  Identities=13%  Similarity=0.059  Sum_probs=131.7

Q ss_pred             chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      .........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.....         
T Consensus        15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------   85 (375)
T 2gfp_A           15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT---------   85 (375)
T ss_dssp             HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---------
Confidence            34556667788888889999999999999999999999999999999999999999998888888776654         


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                         .+.+..++...+.+.+.+.... ...+++.|.+|+++|++++++.+....++..+++.+.+.+.+..+|+..+.+.+
T Consensus        86 ---~~~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  161 (375)
T 2gfp_A           86 ---SSLTVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL  161 (375)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             ---ccHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence               1223344445555555444333 333788999999999999999999999999999999999888889988888877


Q ss_pred             HHHHHHHHHHHhhccCCCC
Q psy17628        279 VYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~  297 (338)
                      ++.++..+...+..||+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          162 VLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHCCCCCSSCCCST
T ss_pred             HHHHHHHHHHHHHCcccCC
Confidence            7777666555566777643

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.63  E-value=3.9e-16  Score=136.79  Aligned_cols=159  Identities=15%  Similarity=0.124  Sum_probs=123.5

Q ss_pred             hHHHHHhhHHHHHh------ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHHHHHHHHHHHHHH
Q psy17628        120 INVVIFYLKRILIA------TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYL  192 (338)
Q Consensus       120 ~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~  192 (338)
                      ++....+.+.++++      .|.+..+.++..+...++..++.+++|+++|| +|||+++..+.++.+++.+++...   
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---  105 (491)
T 4aps_A           29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP---  105 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC---
T ss_pred             HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh---
Confidence            44555566666554      79999999999999999999999999999999 899999999998888887766542   


Q ss_pred             hhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628        193 LKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVVKTFDDVERAFGT  270 (338)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (338)
                               .+.+..++...+.+.+.+....... ++++|.+|++.  |+.++++.+....+|..++|.+.+.+.+..||
T Consensus       106 ---------~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  175 (491)
T 4aps_A          106 ---------FGASALFGSIILIIIGTGFLKPNVS-TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY  175 (491)
T ss_dssp             ---------CSTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             ---------hhHHHHHHHHHHHHHHHHhccchHH-HHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence                     1234445555556655554444444 89999999988  77788888899999999999999999999999


Q ss_pred             ceeehhhhHHHHHHHHHHHhh
Q psy17628        271 GVAFGTFAVYCIIGTFFVYFV  291 (338)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~  291 (338)
                      ++.|++.++..+++.++..+.
T Consensus       176 ~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          176 HVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            998888766666655544443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.56  E-value=2.1e-14  Score=126.88  Aligned_cols=159  Identities=15%  Similarity=0.127  Sum_probs=120.7

Q ss_pred             hHHHHHhhHHHHH-hcc------CCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-CCchHHHHHhHHHHHHHHHHHHHHH
Q psy17628        120 INVVIFYLKRILI-ATN------SKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFY  191 (338)
Q Consensus       120 ~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~  191 (338)
                      ++....+.+.++. +.|      .+..+.++..+...++..++.+++|+++||+ |||+++..+.++.+++.+++.+.  
T Consensus        28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--  105 (524)
T 2xut_A           28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--  105 (524)
T ss_dssp             HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence            4455566666655 468      9999999999999999999999999999999 99999999988888877766553  


Q ss_pred             HhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Q psy17628        192 LLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGV---ICILGSLIEFVVVKTFDDVERAF  268 (338)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  268 (338)
                               ..+.+..++...+.+.+.+....... ++++|.+|++.|+++.+.   .+....+|..++|.+.+.+.+..
T Consensus       106 ---------~~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (524)
T 2xut_A          106 ---------EHSVQGFYTGLFLIALGSGGIKPLVS-SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF  175 (524)
T ss_dssp             ---------SSCHHHHHHHHHHHHHHHHTTHHHHH-HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred             ---------cccHHHHHHHHHHHHHhccccchhHH-HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                     10223344445555555554444444 789999999999876666   88889999999999999888888


Q ss_pred             ccceeehhhhHHHHHHHHHHHh
Q psy17628        269 GTGVAFGTFAVYCIIGTFFVYF  290 (338)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~  290 (338)
                      +|+..|++.+++.++..++.++
T Consensus       176 g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          176 GAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888777766655544433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.50  E-value=5e-16  Score=131.32  Aligned_cols=218  Identities=12%  Similarity=-0.001  Sum_probs=133.7

Q ss_pred             echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (338)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~   77 (338)
                      +|..+++.++..      ||+.|++.   +++.++..++..+++||+|+...++                          
T Consensus       135 ~g~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  185 (375)
T 2gfp_A          135 VSPLLAPLIGGLLDTMWNWRACYLFL---LVLCAGVTFSMARWMPETRPVDAPR--------------------------  185 (375)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHH---HHHHHHHHCCCCCSSCCCSTTTCCC--------------------------
T ss_pred             HHHHhhHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHHHHHCcccCCCCccc--------------------------
Confidence            455555555544      99999999   7777775555677889987531000                          


Q ss_pred             HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHH
Q psy17628         78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMT  156 (338)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~  156 (338)
                              ++.+.++++.+++|..+...     +..+...........+.|.+.++ .|.+..+.+.......++.+++.
T Consensus       186 --------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  252 (375)
T 2gfp_A          186 --------TRLLTSYKTLFGNSGFNCYL-----LMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA  252 (375)
T ss_dssp             --------CCTTTCSTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             --------ccHHHHHHHHhcCcchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence                    00112334455544222211     11222222355666777887777 58888888999999999999999


Q ss_pred             HHHHHhhhhcCCchHHHHHhHH-HHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCC
Q psy17628        157 FFSSLLVDKAGRRPLLLISDIC-MAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT  235 (338)
Q Consensus       157 ~~~g~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  235 (338)
                      ++.+++.||++++  +..+... ...+..........        ..+.+.......+.+.+.+...... ..++.|.+|
T Consensus       253 ~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~p  321 (375)
T 2gfp_A          253 WFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFG--------VMNVWTLLVPAALFFFGAGMLFPLA-TSGAMEPFP  321 (375)
T ss_dssp             HHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH--------HHHHHHHHHHHHHHHHHHHHTSSTT-HHHHHTHHH
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc--------cccHHHHHHHHHHHHHHHHHhhHHH-HHHHHHhCC
Confidence            9999999999872  2233222 22221111111000        0122333344445555555444444 478899998


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628        236 PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFG  275 (338)
Q Consensus       236 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (338)
                       +.|+++.|+.+....++..+++.+.+.+.+..++...+.
T Consensus       322 -~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~  360 (375)
T 2gfp_A          322 -FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLL  360 (375)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHH
T ss_pred             -cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence             889999999999999999999999988877666644443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.46  E-value=2.3e-14  Score=125.60  Aligned_cols=155  Identities=14%  Similarity=0.028  Sum_probs=101.0

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhccc------chhhhhchHHHHHHHH
Q psy17628        140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE------KLVDGLGLLPVASLAI  213 (338)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  213 (338)
                      ..++..+...++.++|++++|+++||+|||+.++++.++..++.++.++.........      .....+....++...+
T Consensus        56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l  135 (491)
T 4gc0_A           56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII  135 (491)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence            3456777888999999999999999999999999999999988887764211000000      0001223445566666


Q ss_pred             HHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccceeehhhhHHHHHHH
Q psy17628        214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF--------GTGVAFGTFAVYCIIGT  285 (338)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  285 (338)
                      .+++.+....... ++++|..|++.|+...++.......+..+++.+........        +|+..+.... +..+..
T Consensus       136 ~G~g~G~~~~~~~-~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  213 (491)
T 4gc0_A          136 GGIGVGLASMLSP-MYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASEC-IPALLF  213 (491)
T ss_dssp             HHHHHHHHHHHHH-HHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTH-HHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhh-hhhhhh
Confidence            6666665544444 89999999999999999988887777766665554443322        2333333333 333333


Q ss_pred             HHHHhhccCCC
Q psy17628        286 FFVYFVVPETK  296 (338)
Q Consensus       286 ~~~~~~~~~~~  296 (338)
                      ++..++.||+.
T Consensus       214 ~~~~~~~peSp  224 (491)
T 4gc0_A          214 LMLLYTVPESP  224 (491)
T ss_dssp             HHHGGGSCCCH
T ss_pred             hhhhhcCCCCh
Confidence            44555688873

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.28  E-value=1.6e-12  Score=114.77  Aligned_cols=91  Identities=9%  Similarity=-0.020  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c---------ceee
Q psy17628        206 LPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG--T---------GVAF  274 (338)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~  274 (338)
                      ..+....+.+.+.+... +..+.++.|..|++.||+++|+.+....+++.+++.+.+.+.+..+  |         ...+
T Consensus       407 ~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~  485 (524)
T 2xut_A          407 WQILPYALLTFGEVLVS-ATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQM  485 (524)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHH
Confidence            33444444454444333 3334788999999999999999999999999999999988765321  1         1125


Q ss_pred             hhhhHHHHHHHHHHHhhccCCCC
Q psy17628        275 GTFAVYCIIGTFFVYFVVPETKN  297 (338)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      ++.+++.+++.++.+++.++.++
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~  508 (524)
T 2xut_A          486 FFFAGFAILAAIVFALYARSYQM  508 (524)
T ss_dssp             HHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            55566666665555554555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.22  E-value=3.3e-12  Score=109.40  Aligned_cols=155  Identities=11%  Similarity=0.045  Sum_probs=93.7

Q ss_pred             hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      +.....+.|.++++ .|.+..+.+...+...++..+++++.|+++||+|||++++.+..+..+....+........    
T Consensus        23 ~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~----   98 (417)
T 2cfq_A           23 MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPL----   98 (417)
T ss_dssp             HHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHH----
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            44556778887766 6999999999999999999999999999999999999998877665443211111000000    


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP--DVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGT  276 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (338)
                          ..........+.+...+....... ....+..++  +.|+.+.+.....+.+|..++|.+.+.+.+ .+|+..|++
T Consensus        99 ----~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~  172 (417)
T 2cfq_A           99 ----LQYNILVGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWL  172 (417)
T ss_dssp             ----HHTTCCHHHHGGGSSTTHHHHTTH-HHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTT
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHH
Confidence                000001111111111111111111 222233322  345666777766777888888888887776 477777776


Q ss_pred             hhHHHHHH
Q psy17628        277 FAVYCIIG  284 (338)
Q Consensus       277 ~~~~~~~~  284 (338)
                      .++..++.
T Consensus       173 ~~~~~~~~  180 (417)
T 2cfq_A          173 GSGCALIL  180 (417)
T ss_dssp             TTTTTTTH
T ss_pred             HHHHHHHH
Confidence            65554333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	338
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 33/242 (13%), Positives = 62/242 (25%), Gaps = 9/242 (3%)

Query: 65  RGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVI 124
            G       + D      +   Q+  +           K    I     F+      ++ 
Sbjct: 211 CGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 270

Query: 125 FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184
           +    +    +  +   ++   +  +  +  T     + DK  R          M +   
Sbjct: 271 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 330

Query: 185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALG 244
           A   Y+        +             I I     G   + G+   EL      G A G
Sbjct: 331 ATIVYW--------MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 382

Query: 245 VICILGSLIEFVVVKTF-DDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQI 303
              + G L   V            FG    F       I+    +  V+   K +  Q +
Sbjct: 383 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLL 442

Query: 304 QD 305
           Q+
Sbjct: 443 QE 444

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.8
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.74
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.72
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.35

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.8e-20  Score=159.01  Aligned_cols=248  Identities=13%  Similarity=0.055  Sum_probs=149.5

Q ss_pred             hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (338)
Q Consensus        16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
                      ||+.|++.   +.+.++..++.+++++|+|+........+..           .+..  .+..++..++...++...+..
T Consensus       182 w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--~~~~~~~~~~~~~~~~~~~~~  245 (447)
T d1pw4a_         182 WHAALYMP---AFCAILVALFAFAMMRDTPQSCGLPPIEEYK-----------NDYP--DDYNEKAEQELTAKQIFMQYV  245 (447)
T ss_dssp             STTCTHHH---HHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-----------CC---------------CCTHHHHHHT
T ss_pred             ccccchhh---hhhHHHHHHHHHHhcccchhhcccchhhhhh-----------hhcc--cchhhccccccchhhHHHHHH
Confidence            99999999   8888887888888888887643221111100           0000  000001111111222233444


Q ss_pred             HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  174 (338)
                      ++++     .+.......+......+....+.|.++.+. +.+..+.+.......+..+++.++.|+++||++|++....
T Consensus       246 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  320 (447)
T d1pw4a_         246 LPNK-----LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT  320 (447)
T ss_dssp             SSCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HcCc-----hHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc
Confidence            4443     222222222223333556677788887765 8888888999999999999999999999999999876555


Q ss_pred             HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (338)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (338)
                      ......+............       ..+.+...+...+.+++... ..+..+.+..|.+|++.|++++|+.+..+++++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g  392 (447)
T d1pw4a_         321 GVFFMTLVTIATIVYWMNP-------AGNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG  392 (447)
T ss_dssp             HHHHHHHHHHHHHHTTSCC-------TTCHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHhcc-------cccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            5444333333222211100       11223333333444433333 233444788999999999999999999888754


Q ss_pred             -HHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhc
Q psy17628        255 -FVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV  292 (338)
Q Consensus       255 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (338)
                       .++|.+.+.+.+.+|++..+.+.+++.+++.++.+.+.
T Consensus       393 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence             55788889999999998888777777776665555543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=5.3e-18  Score=144.66  Aligned_cols=164  Identities=13%  Similarity=0.060  Sum_probs=127.3

Q ss_pred             HHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhh
Q psy17628        123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG  202 (338)
Q Consensus       123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (338)
                      +....| ++++.|++..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++++......        .
T Consensus        44 ~~~~~p-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--------~  114 (447)
T d1pw4a_          44 FALAMP-YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--------S  114 (447)
T ss_dssp             HHHHHH-HTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--------S
T ss_pred             HHHHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh--------h
Confidence            344445 4467899999999999999999999999999999999999999999999888887776643221        1


Q ss_pred             hchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccceeehhhhHHH
Q psy17628        203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF-GTGVAFGTFAVYC  281 (338)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  281 (338)
                      ..+..++...+.+.+.+....... .++.|.+|+++|++++++.+....+|..+++.+.+...+.. +|+..+++.+.+.
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~  193 (447)
T d1pw4a_         115 SIAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA  193 (447)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHH-HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhH
Confidence            223445555555555555544444 78999999999999999999999999999988887766644 6888888888887


Q ss_pred             HHHHHHHHhhccCCC
Q psy17628        282 IIGTFFVYFVVPETK  296 (338)
Q Consensus       282 ~~~~~~~~~~~~~~~  296 (338)
                      .+..++.+++.++++
T Consensus       194 ~~~~~~~~~~~~~~~  208 (447)
T d1pw4a_         194 ILVALFAFAMMRDTP  208 (447)
T ss_dssp             HHHHHHHHHHCCCSS
T ss_pred             HHHHHHHHHhcccch
Confidence            777777777666553

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2e-18  Score=145.39  Aligned_cols=153  Identities=13%  Similarity=0.125  Sum_probs=115.5

Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHH
Q psy17628        137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII  216 (338)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (338)
                      +....+.......++..++..+.+++.||+|+|+.+..+..+.+++.+.+...            .+.+..++...+.+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~  324 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------TSALEVVILKTLHMF  324 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC------------CCHHHHHHHHHHHHH
T ss_pred             chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc------------cccchhhHHHHHHHH
Confidence            44455666777788888999999999999999999999888887776655442            123344444455555


Q ss_pred             hhcccccccceeeeeccCCchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCC
Q psy17628        217 VFSVGFGPIPGVMMGELFTPDVKGLALGVIC-ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  295 (338)
Q Consensus       217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (338)
                      +.+....... +++.|.+|++.|+++.++.. ....++..++|.+.+.+.+..|++..+++.+++.++..++..+.++++
T Consensus       325 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         325 EVPFLLVGCF-KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHH-HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHH-HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            5554444444 78999999999999999865 456788999999999999999998888888888888887777777766


Q ss_pred             CCCCHHH
Q psy17628        296 KNKSLQQ  302 (338)
Q Consensus       296 ~~~~~~~  302 (338)
                      +.....+
T Consensus       404 ~~~~~~r  410 (417)
T d1pv7a_         404 GPLSLLR  410 (417)
T ss_dssp             SCTTHHH
T ss_pred             CccchhH
Confidence            6555433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=1.1e-12  Score=109.60  Aligned_cols=169  Identities=11%  Similarity=0.077  Sum_probs=102.4

Q ss_pred             hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (338)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ......+.|.++++ .|.|..+.++..+...++..+++++.|+++||+|||+.++.+..+..++...+........    
T Consensus        23 ~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~----   98 (417)
T d1pv7a_          23 MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPL----   98 (417)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHH----
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhh----
Confidence            44556677776665 5999999999999999999999999999999999999999988877777666555411110    


Q ss_pred             hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCC--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehh
Q psy17628        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT--PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGT  276 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (338)
                          .....+......+...+....... ....+..+  .+.+....+........+..+++.+.+.+.+. +++..+..
T Consensus        99 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~  172 (417)
T d1pv7a_          99 ----LQYNILVGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWL  172 (417)
T ss_dssp             ----HHTTCHHHHHHTTTTGGGGGTTHH-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHH
T ss_pred             ----HHHHHHHHHHHhhhcccccccchh-hcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccc
Confidence                111112222222222222222221 11122222  12344555666666667777777777766554 44455555


Q ss_pred             hhHHHHHHHHHHHhhccCCCCC
Q psy17628        277 FAVYCIIGTFFVYFVVPETKNK  298 (338)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~  298 (338)
                      ......+..++..+..++++..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~  194 (417)
T d1pv7a_         173 GSGCALILAVLLFFAKTDAPSS  194 (417)
T ss_dssp             HHHHHHHHHHHHHSSCCCSCSS
T ss_pred             hhhHHHHHHHHHHHHhcccccc
Confidence            5555555555566656665443