Psyllid ID: psy17630

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASRKSTKSNTSAGSRPSNVG
Secondary Structure (PSIPRED)
cEEEHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHHHHcHHccHHHHHcHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccEEEEEHHHcHHHHHHccccHHHHHHHHHHHHHHHHHHEEccccccccHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccHccccccHHHcccccccc
Coil and Loop (DISEMBL)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVapetpvyllSKKRRKDAEKSLLilrgpnydihGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATnskiispnygqnIVGFIQVIMTFFSSLLvdkagrrplllISDICMAICIGALGYYFYLLKLDEKLVdglgllpvASLAIYIIVFSVgfgpipgvmmgelftpdvkGLALGVICILGSLIEFVVVKTVrhrftpdvkgLALGVICILGSLIEFVVVKtfddverafgtgvafGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVkkkkkarrtgsasrkstksntsagsrpsnvg
Flexible Loop (DISEMBL)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPEtpvyllskkrrkDAEKsllilrgpnydIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDelsgvkkkkkarrtgsasrkstksntsagsrpsnvg
Low Complexity Region (SEG)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASRKSTKSNTSAGSRPSNVG
Disordered region (IsUnstruct)
**VSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRR*DAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP************************************************
Disordered Region (DISOPRED)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELD*******************YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQ*************************************
Disordered Region (DISEMBL)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDEL**********************************
Disordered Region (DISPRO)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGV*******************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGExxxxxxxxxxxxxxxxxxxxxYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASRKSTKSNTSAGSRPSNVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
B4QBN3	488	Facilitated trehalose tra	N/A	N/A	0.803	0.612	0.368	2e-46
B4HNS1	488	Facilitated trehalose tra	N/A	N/A	0.803	0.612	0.365	7e-46
Q8MKK4	488	Facilitated trehalose tra	no	N/A	0.803	0.612	0.359	2e-45
Q17NV8	806	Facilitated trehalose tra	N/A	N/A	0.822	0.379	0.358	3e-44
Q7PIR5	793	Facilitated trehalose tra	no	N/A	0.822	0.385	0.353	1e-43
A9ZSY3	505	Facilitated trehalose tra	N/A	N/A	0.819	0.603	0.343	4e-43
B0WC46	517	Facilitated trehalose tra	N/A	N/A	0.836	0.601	0.343	6e-43
Q291H8	868	Facilitated trehalose tra	no	N/A	0.822	0.352	0.350	7e-43
B4GAP7	869	Facilitated trehalose tra	N/A	N/A	0.822	0.352	0.350	7e-43
B3MG58	866	Facilitated trehalose tra	N/A	N/A	0.822	0.353	0.347	2e-42

>sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/339 (36%), Positives = 177/339 (52%), Gaps = 40/339 (11%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  YV GS + +++++      +PV   L+ +I+ PETP + +++ + + A K+L  L
Sbjct: 170 GILVCYVAGS-FMNWSMLAFLGAALPV-PFLILMIIIPETPRWFVNRGQEERARKALKWL 227

Query: 65  RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           RG   D+  EL +L   Q E D QA++   L E++  +  +K   + +GL+ F  FSGIN
Sbjct: 228 RGKEADVEPELKDLMQSQAEADSQARRNTCL-ELF-KRINLKPLSISLGLMFFQQFSGIN 285

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY  +I     S I S N    IVG +    TF   LL+D+ GR+ LL ISDI M +
Sbjct: 286 AVIFYTVQIFKDAGSTIDS-NLCTIIVGIVNFFATFMGILLIDRLGRKILLYISDIAMIL 344

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY  K     V  LG LP+    IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct: 345 TLSILGGFFYC-KAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGP 403

Query: 242 ALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 301
           A  V+                          A    C       FVV KTF D+  A G 
Sbjct: 404 AASVVT-------------------------AFNWFC------TFVVTKTFQDLTVAMGA 432

Query: 302 GVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSG 340
             AF  F V CI+G FFV   VPET+ KSL++I+ ++ G
Sbjct: 433 HGAFWLFGVVCIVGLFFVIICVPETRGKSLEEIERKMMG 471

Fails to transport trehalose.
Drosophila simulans (taxid: 7240)

>sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1

 Score =  184 bits (468), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 177/339 (52%), Gaps = 40/339 (11%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  YV GS + +++I+      +PV   L+ +I+ PETP + +++ + + A K+L  L
Sbjct: 170 GILVCYVAGS-FMNWSILAFLGAALPV-PFLILMIIIPETPRWFVNRGQEERARKALKWL 227

Query: 65  RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           RG   D+  EL +L   Q E D QA +   L E++  +  +K   + +GL+ F  FSGIN
Sbjct: 228 RGKEADVEPELKDLMQSQAEADSQATRNTCL-ELF-KRINLKPLSISLGLMFFQQFSGIN 285

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY  +I     S I S N    IVG +    TF   +L+D+ GR+ LL +SDI M +
Sbjct: 286 AVIFYTVQIFKDAGSTIDS-NLCTIIVGIVNFFATFMGIILIDRLGRKILLYVSDIAMIL 344

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY  K     V  LG LP++   IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct: 345 TLSILGGFFYC-KAHGPDVSHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGP 403

Query: 242 ALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 301
           A  V+                          A    C       FVV KTF D+  A G 
Sbjct: 404 AASVVT-------------------------AFNWFC------TFVVTKTFQDLTVAMGP 432

Query: 302 GVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSG 340
             AF  F V CI+G FFV   VPET+ KSL++I+ ++ G
Sbjct: 433 HGAFWLFGVVCIVGLFFVIIYVPETRGKSLEEIERKMMG 471

Fails to transport trehalose.

Drosophila sechellia (taxid: 7238)

>sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 175/339 (51%), Gaps = 40/339 (11%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  YV GS + +++++      +PV   L+ +I+ PETP + +++ + + A K+L  L
Sbjct: 170 GILVCYVAGS-FMNWSMLAFLGAALPV-PFLILMIIIPETPRWFVNRGQEERARKALKWL 227

Query: 65  RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           RG   D+  EL EL   Q + D QA +   L E++  +  +K   + +GL+ F  FSGIN
Sbjct: 228 RGKEADVEPELKELMQSQADADRQATQNTCL-ELF-KRNNLKPLSISLGLMFFQQFSGIN 285

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY  +I     S I S N    IVG +    TF   +L+D+ GR+ LL +SDI M +
Sbjct: 286 AVIFYTVQIFKDAGSTIDS-NLSTIIVGVVNFFATFMGIILIDRLGRKILLYVSDIAMIV 344

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY  K     V  LG LP+    IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct: 345 TLSILGGFFYC-KAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGP 403

Query: 242 ALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 301
           A  V+                          A    C       FVV KTF D+  A G 
Sbjct: 404 AASVVT-------------------------AFNWFC------TFVVTKTFQDLTVAMGA 432

Query: 302 GVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSG 340
             AF  F   CI+G FFV   VPET+ KSL++I+ ++ G
Sbjct: 433 HGAFWLFGAICIVGLFFVIIFVPETRGKSLEEIERKMMG 471

Fails to transport trehalose.

Drosophila melanogaster (taxid: 7227)

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score =  179 bits (454), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/351 (35%), Positives = 179/351 (50%), Gaps = 45/351 (12%)

Query: 5   GILYTYVIGSLYEDYTIICL--SCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLL 62
           GIL  +V G  Y D++ +    + L IP L LL+FLI  PETP + +S+ R   A K+L 
Sbjct: 487 GILLCFVAGK-YMDWSGLAFLGAALPIPFL-LLMFLI--PETPRWYVSRGRDDRARKALQ 542

Query: 63  ILRGPNYDIHGELDEL-QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
            LRG   D+  EL  + +   D +    +S +     KA +K  ++ +GL+ F   SGIN
Sbjct: 543 WLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLMKKANLKPLLISLGLMFFQQLSGIN 602

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY  +I     S  I  N    IVG +  I TF +++L+D+ GR+ LL ISD+ M I
Sbjct: 603 AVIFYTVQIFQDAGS-TIDENLCTIIVGVVNFIATFIATMLIDRLGRKMLLYISDVAMII 661

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY+ K   + V  +G LP+A+  IY++ FS+GFGPIP +MMGE+    ++G 
Sbjct: 662 TLMTLGGFFYV-KNSGQDVSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGEILPGKIRGS 720

Query: 242 ALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 301
           A  V                           A    C       F+V KTF D+  A GT
Sbjct: 721 AASVAT-------------------------AFNWSCT------FIVTKTFADIINAIGT 749

Query: 302 GVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGS 352
              F  F   C+IG  FV F VPET+ KSL+ I+ ++ G     + RR  S
Sbjct: 750 HGTFWMFGSICVIGLAFVIFYVPETQGKSLEDIERKMMG-----RVRRMSS 795

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Aedes aegypti (taxid: 7159)

>sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3

 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/351 (35%), Positives = 178/351 (50%), Gaps = 45/351 (12%)

Query: 5   GILYTYVIGSLYEDYTIICL--SCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLL 62
           GIL  +V G  Y D++ +    + L IP L LL+FLI  PETP + +S+ R   A K+L 
Sbjct: 474 GILLCFVAGK-YLDWSGLAFLGAALPIPFL-LLMFLI--PETPRWYVSRNREDRARKALQ 529

Query: 63  ILRGPNYDIHGELDELQK-ELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
            LRG   D+  EL  + K   D +     S +    NKA +K  ++ +GL+ F   SGIN
Sbjct: 530 WLRGRKADVEPELKGISKSHQDAERHASSSAMLDLLNKANLKPLLISLGLMFFQQLSGIN 589

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY  +I  +  S  I       IVG +  I TF +++L+D+ GR+ LL ISD+ M I
Sbjct: 590 AVIFYTVQIFQSAGS-TIDEKLCTIIVGVVNFIATFIATVLIDRLGRKILLYISDVAMII 648

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY+ K +   V  +G LP+A+  ++++ FS+GFGPIP +MMGE+    ++G 
Sbjct: 649 TLMTLGTFFYM-KNNGDDVSEIGWLPLAAFVVFVVGFSLGFGPIPWLMMGEILPGKIRGS 707

Query: 242 ALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 301
           A  V                           A    C       FVV KTF D+  + G 
Sbjct: 708 AASV-------------------------ATAFNWSCT------FVVTKTFADITASIGN 736

Query: 302 GVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGS 352
             AF  F   CI+G  FV   VPET+ KSL+ I+ ++ G     + RR  S
Sbjct: 737 HGAFWMFGSICIVGLLFVIVYVPETQGKSLEDIERKMMG-----RVRRMSS 782

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Anopheles gambiae (taxid: 7165)

>sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1

 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 179/346 (51%), Gaps = 41/346 (11%)

Query: 4   SGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLI 63
           +GIL  +++GS Y D++ +      IPV    + +I+ PETP + +SK R ++A KSL  
Sbjct: 188 TGILLAFLVGS-YLDWSNLAFFGAAIPV-PFFLLMILTPETPRWYVSKARVQEARKSLRW 245

Query: 64  LRGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
           LRG N +I  E+ +L   Q E D       +  +++S K  + A ++ +GL+ F   +GI
Sbjct: 246 LRGKNVNIEKEMRDLTISQTESD--RTGGNAFKQLFS-KRYLPAVMISLGLMLFQQLTGI 302

Query: 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180
           N VIFY   I   + S +   N    I+G +  I TF +++L+D+ GR+ LL IS + M 
Sbjct: 303 NAVIFYAASIFQMSGSSV-DENLASIIIGVVNFISTFIATMLIDRLGRKVLLYISSVAMI 361

Query: 181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240
             + ALG YFYL K +   V   G LP+A L IY++ FS+GFGPIP +M+GE+    ++G
Sbjct: 362 TTLLALGAYFYL-KQNHIDVTAYGWLPLACLVIYVLGFSIGFGPIPWLMLGEILPSKIRG 420

Query: 241 LALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG 300
            A                             LA G          F+V KTF ++  A  
Sbjct: 421 TA---------------------------ASLATG----FNWTCTFIVTKTFQNIIDAIY 449

Query: 301 TGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKK 346
                  FAV CI G  FV F VPETK KSL++I+ +L+   ++ +
Sbjct: 450 MHGTLWLFAVICIGGLLFVIFFVPETKGKSLEEIEMKLTSGSRRVR 495

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Bombyx mori (taxid: 7091)

>sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1

 Score =  175 bits (443), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 121/352 (34%), Positives = 176/352 (50%), Gaps = 41/352 (11%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  +V G+ Y D++ +      +PV   L+ + + PETP + +S+ R   A K+L  L
Sbjct: 198 GILLCFVAGN-YMDWSELAFLGATLPV-PFLILMFLIPETPRWYVSRGRDDRARKALQWL 255

Query: 65  RGPNYDIHGELDELQK-ELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVV 123
           RG   D+  EL  + K   D +    +S +     K  +K  ++ +GL+ F   SGIN V
Sbjct: 256 RGKKADVDPELKGIIKSHQDAERHASQSAMLDLLKKTNLKPLLISLGLMFFQQLSGINAV 315

Query: 124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI 183
           IFY  +I     S I   N    IVG +  I TF ++LL+D+ GR+ LL ISDI M I +
Sbjct: 316 IFYTVQIFQDAGSTI-DENLCTIIVGVVNFIATFIATLLIDRLGRKMLLYISDIAMIITL 374

Query: 184 GALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLAL 243
             LG +FY+ K +   V  +G LP+AS  I+++ FS+GFGPIP +MMGE+    ++G A 
Sbjct: 375 MTLGGFFYV-KNNGGDVSHIGWLPLASFVIFVLGFSLGFGPIPWLMMGEILPGKIRGSAA 433

Query: 244 GVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGV 303
            V                           A    C       FVV KTF D+  + GT  
Sbjct: 434 SV-------------------------ATAFNWSC------TFVVTKTFADIIASIGTHG 462

Query: 304 AFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASR 355
           AF  F   C++G  FV   VPET+ KSL+ I+ ++ G     + RR  S + 
Sbjct: 463 AFWMFGSVCVVGLVFVIMYVPETQGKSLEDIERKMCG-----RVRRMSSVAN 509

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Culex quinquefasciatus (taxid: 7176)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score =  174 bits (442), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 175/351 (49%), Gaps = 45/351 (12%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  +V G+ Y D++++      +PV   L+ + + PETP + +S+ R + A K+L  L
Sbjct: 549 GILLCFVAGT-YMDWSMLAFLGAALPV-PFLILMFLIPETPRWFVSRGREEKARKALSWL 606

Query: 65  RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           RG   D+  EL  L   Q + D QA + K +  +  N   +K   + +GL+ F   SGIN
Sbjct: 607 RGKEADVEPELKGLMRSQADADRQATQNKMMELLKRN--NLKPLSISLGLMFFQQLSGIN 664

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY   I     S  I  N    IVG +  + TF ++LL+D+AGR+ LL +S+I M I
Sbjct: 665 AVIFYTVSIFKDAGS-TIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMII 723

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY  K   + V  LG LP++   IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct: 724 TLFVLGGFFYC-KSHGQDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGS 782

Query: 242 ALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 301
           A  V                           A    C       FVV KTF D+    G 
Sbjct: 783 AASVAT-------------------------AFNWSCT------FVVTKTFQDMIDFMGA 811

Query: 302 GVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGS 352
             AF  F   C IG FFV   VPET+ K+L+ I+ ++ G     + RR  S
Sbjct: 812 HGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKMMG-----RVRRMSS 857

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2

 Score =  174 bits (442), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 175/351 (49%), Gaps = 45/351 (12%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  +V G+ Y D++++      +PV   L+ + + PETP + +S+ R + A K+L  L
Sbjct: 550 GILLCFVAGT-YMDWSMLAFLGAALPV-PFLILMFLIPETPRWFVSRGREEKARKALSWL 607

Query: 65  RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           RG   D+  EL  L   Q + D QA + K +  +  N   +K   + +GL+ F   SGIN
Sbjct: 608 RGKEADVEPELKGLMRSQADADRQATQNKMMELLKRN--NLKPLSISLGLMFFQQLSGIN 665

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY   I     S  I  N    IVG +  + TF ++LL+D+AGR+ LL +S+I M I
Sbjct: 666 AVIFYTVSIFKDAGS-TIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMII 724

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY  K   + V  LG LP++   IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct: 725 TLFVLGGFFYC-KSHGQDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGS 783

Query: 242 ALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 301
           A  V                           A    C       FVV KTF D+    G 
Sbjct: 784 AASVAT-------------------------AFNWSCT------FVVTKTFQDMIDFMGA 812

Query: 302 GVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGS 352
             AF  F   C IG FFV   VPET+ K+L+ I+ ++ G     + RR  S
Sbjct: 813 HGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKMMG-----RVRRMSS 858

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila persimilis (taxid: 7234)

>sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 175/351 (49%), Gaps = 45/351 (12%)

Query: 5   GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
           GIL  +V G+ Y D++++      +PV   LV + + PETP + +S+ R + A K+L  L
Sbjct: 547 GILLCFVAGT-YMDWSMLAFLGAALPV-PFLVLMFLIPETPRWFVSRGREERARKALSWL 604

Query: 65  RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           RG   D+  EL  L   Q + D Q   + +++E+   ++  K   + +GL+ F   SGIN
Sbjct: 605 RGKEADVEPELKGLMRSQADADRQG-TQNTMLELL-KRSNFKPLSISLGLMFFQQLSGIN 662

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
            VIFY   I     S  I  N    IVG +  + TF ++LL+D+AGR+ LL +S+I M I
Sbjct: 663 AVIFYTVSIFKDAGS-TIDGNVCTIIVGVVNFLATFIATLLIDRAGRKILLYVSNIAMII 721

Query: 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
            +  LG +FY  K     V  LG LP++   IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct: 722 TLFVLGGFFYC-KAHGPDVSHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGS 780

Query: 242 ALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 301
           A  V                           A    C       FVV KTF D+    G 
Sbjct: 781 AASVAT-------------------------AFNWTCT------FVVTKTFQDMIDVMGA 809

Query: 302 GVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGS 352
             AF  F   C IG FFV   VPET+ K+L+ I+ ++ G     + RR  S
Sbjct: 810 HGAFWLFGAICFIGLFFVILYVPETQGKTLEDIERKMMG-----RVRRMSS 855

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila ananassae (taxid: 7217)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
328713890	522	PREDICTED: facilitated trehalose transpo	0.846	0.603	0.467	1e-76
328713900	548	PREDICTED: facilitated trehalose transpo	0.887	0.602	0.461	5e-75
193598971	585	PREDICTED: facilitated trehalose transpo	0.887	0.564	0.461	7e-75
291461567	478	sugar transporter 4 [Nilaparvata lugens]	0.819	0.638	0.426	3e-62
194752029	543	GF10864 [Drosophila ananassae] gi|190625	0.862	0.591	0.403	2e-59
195021750	541	GH14492 [Drosophila grimshawi] gi|193898	0.822	0.565	0.397	2e-57
195327241	539	GM24627 [Drosophila sechellia] gi|194119	0.833	0.575	0.411	3e-57
195428086	552	GK17357 [Drosophila willistoni] gi|19415	0.836	0.563	0.397	4e-57
198466442	549	GA23919 [Drosophila pseudoobscura pseudo	0.819	0.555	0.397	4e-57
24663511	539	CG10960, isoform B [Drosophila melanogas	0.833	0.575	0.411	5e-57

>gi|328713890|ref|XP_001946479.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 166/355 (46%), Positives = 225/355 (63%), Gaps = 40/355 (11%)

Query: 2   VVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSL 61
           V  GILY Y IG  + +Y  + + C ++PV+  ++ L+V PE+P YL    + K+AE  L
Sbjct: 206 VTLGILYVYSIGP-FVNYAWLAIMCGILPVIWFILVLLVLPESPTYLWRSGKNKEAEDVL 264

Query: 62  LILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           ++LRG +YDI GEL  LQKEL+ + +    L ++  +KAT++A    +GL  FLS SGIN
Sbjct: 265 VMLRGKDYDISGELQALQKELE-EKKPNGKLKDMVKSKATLRAAFTALGLFGFLSCSGIN 323

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
           VVIF  + I  +T S I+SP     ++G +QVI TF SS LVD+AGRR LLLISD  MA+
Sbjct: 324 VVIFNAQTIFSSTGS-IVSPKTSSIVIGILQVIFTFTSSQLVDRAGRRVLLLISDSVMAV 382

Query: 182 CIGALGYYFYLLKLDEKLVDG--LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
           C+G+LG+YF+ L   E  VD     L+P+ SL +YI  FS+GFGPIPGVM+GELF+P+ K
Sbjct: 383 CLGSLGFYFWQL---EHGVDTSVFSLVPLISLGVYISTFSLGFGPIPGVMVGELFSPEFK 439

Query: 240 GLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF 299
                                          GLA+G++C+L SLIEF VVK++  +   +
Sbjct: 440 -------------------------------GLAIGIVCVLASLIEFSVVKSYQTLLDNY 468

Query: 300 GTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSAS 354
           G GV FG FA  C++GT FV F+VPETKNKSLQ+IQDELSG KKK + ++  S S
Sbjct: 469 GRGVTFGVFAGCCVMGTLFVLFLVPETKNKSLQEIQDELSG-KKKSEQKQGPSGS 522

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713900|ref|XP_003245205.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 2 [Acyrthosiphon pisum]

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 170/368 (46%), Positives = 235/368 (63%), Gaps = 38/368 (10%)

Query: 2   VVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSL 61
           V  GILY Y IG  +  Y  + + C +IPV+  ++ L+VAPETP YLL   RR++AE SL
Sbjct: 211 VTLGILYVYAIGP-FVSYEGLAILCGIIPVIMFVLVLLVAPETPTYLLRAGRRREAEHSL 269

Query: 62  LILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           ++LRG  YDI GEL+ELQ++L+ +  +     ++ S++ATV+A+I ++GLL FLSFSGIN
Sbjct: 270 VLLRGHEYDIAGELEELQQQLEEEQNRSSKFKDLISSRATVRASIAVMGLLSFLSFSGIN 329

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
           V+IFY + I  +++S I        I+G +QV  TF S+LLVDKAGRR LLLISD  MA+
Sbjct: 330 VLIFYAESIFKSSSSSISP-QVSSIIIGVLQVKFTFASALLVDKAGRRVLLLISDSVMAV 388

Query: 182 CIGALGYYFYLLKLDEKLVD--GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
           C+G LGY+F+     E  VD     L+P+ SL +YI  FS+GFGPIPGVMMGELF+P   
Sbjct: 389 CLGCLGYFFWQ---SEHGVDVSAFSLIPLISLGVYISTFSLGFGPIPGVMMGELFSP--- 442

Query: 240 GLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF 299
                                       DVKGLALG++C++ SL+EFVVVK + ++   F
Sbjct: 443 ----------------------------DVKGLALGIVCVIASLLEFVVVKMYQNLLDWF 474

Query: 300 GTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASRKSTK 359
             G+ F  FA +C++GT FV+F+VPETKNK+LQ+IQ+ELSG KK    +     S+K   
Sbjct: 475 DHGITFWIFAGFCVLGTVFVWFLVPETKNKTLQEIQNELSGKKKSNNRKDNPKGSKKHHM 534

Query: 360 SNTSAGSR 367
            ++  G +
Sbjct: 535 MDSLTGDQ 542

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193598971|ref|XP_001946430.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 3 [Acyrthosiphon pisum]

 Score =  287 bits (734), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 170/368 (46%), Positives = 235/368 (63%), Gaps = 38/368 (10%)

Query: 2   VVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSL 61
           V  GILY Y IG  +  Y  + + C +IPV+  ++ L+VAPETP YLL   RR++AE SL
Sbjct: 248 VTLGILYVYAIGP-FVSYEGLAILCGIIPVIMFVLVLLVAPETPTYLLRAGRRREAEHSL 306

Query: 62  LILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
           ++LRG  YDI GEL+ELQ++L+ +  +     ++ S++ATV+A+I ++GLL FLSFSGIN
Sbjct: 307 VLLRGHEYDIAGELEELQQQLEEEQNRSSKFKDLISSRATVRASIAVMGLLSFLSFSGIN 366

Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
           V+IFY + I  +++S I        I+G +QV  TF S+LLVDKAGRR LLLISD  MA+
Sbjct: 367 VLIFYAESIFKSSSSSISP-QVSSIIIGVLQVKFTFASALLVDKAGRRVLLLISDSVMAV 425

Query: 182 CIGALGYYFYLLKLDEKLVD--GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
           C+G LGY+F+     E  VD     L+P+ SL +YI  FS+GFGPIPGVMMGELF+PD  
Sbjct: 426 CLGCLGYFFWQ---SEHGVDVSAFSLIPLISLGVYISTFSLGFGPIPGVMMGELFSPD-- 480

Query: 240 GLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF 299
                                        VKGLALG++C++ SL+EFVVVK + ++   F
Sbjct: 481 -----------------------------VKGLALGIVCVIASLLEFVVVKMYQNLLDWF 511

Query: 300 GTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASRKSTK 359
             G+ F  FA +C++GT FV+F+VPETKNK+LQ+IQ+ELSG KK    +     S+K   
Sbjct: 512 DHGITFWIFAGFCVLGTVFVWFLVPETKNKTLQEIQNELSGKKKSNNRKDNPKGSKKHHM 571

Query: 360 SNTSAGSR 367
            ++  G +
Sbjct: 572 MDSLTGDQ 579

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291461567|dbj|BAI83418.1| sugar transporter 4 [Nilaparvata lugens]

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/340 (42%), Positives = 207/340 (60%), Gaps = 35/340 (10%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
           M+  GILY YV+G+L+  Y+ + + C ++PV+ +L+F + AP++P YLL K RR DAEK+
Sbjct: 163 MLTVGILYVYVVGTLF-SYSSLQVLCGIVPVVFMLLF-VKAPDSPTYLLKKGRRHDAEKA 220

Query: 61  LLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
           L +LRGP+YDIH EL+ +Q ELD  +++K S  +    KA++K+  + +GL+ F  FSG+
Sbjct: 221 LRLLRGPSYDIHAELNNIQYELDKASRQKVSFAKAIMKKASLKSLFIALGLMLFQQFSGV 280

Query: 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180
           N VIFY   I  A  S  + P+    IVG IQVI+T+FS++LVDKAGRR LLLIS   MA
Sbjct: 281 NAVIFYSVSIFQAAGST-LDPSICTVIVGIIQVIVTYFSAVLVDKAGRRILLLISSSVMA 339

Query: 181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240
           +C+G LGYYF+L +  E  V  +G++P+ S+ ++I+VFS+GFGPIP +M GELF+ D+KG
Sbjct: 340 LCLGCLGYYFHLQQKGED-VSNIGMIPLVSVCVFIVVFSLGFGPIPWLMTGELFSGDIKG 398

Query: 241 LALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG 300
            A  +   L     F++ KT +   T                                 G
Sbjct: 399 FASSLAVTLNWTSTFILTKTFQSFLT-------------------------------TIG 427

Query: 301 TGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSG 340
               F   A  C +GT FV+  V ETK KSL++IQ EL+G
Sbjct: 428 ADWTFWALASICSVGTVFVFLFVIETKGKSLEEIQCELAG 467

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194752029|ref|XP_001958325.1| GF10864 [Drosophila ananassae] gi|190625607|gb|EDV41131.1| GF10864 [Drosophila ananassae]

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 144/357 (40%), Positives = 199/357 (55%), Gaps = 36/357 (10%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
           M+  GIL+ Y IG+  E +  + + C ++P++   +F  + PE+P YL++K R ++A KS
Sbjct: 222 MITIGILFVYAIGAGLEIF-WVSVVCGLLPLVFGAIFFFM-PESPTYLVAKDRSENAIKS 279

Query: 61  LLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKA-TVKATIVIVGLLCFLSFSG 119
           +  LRG +YD   EL EL +E D + ++ K  V    N+  T KA  + +GL+ F    G
Sbjct: 280 IQWLRGKDYDYEPELAEL-RETDREIRENKVNVWSALNRPVTRKALAISLGLMFFQQVCG 338

Query: 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM 179
           IN VIFY  RI    N+ I    +   ++G +QV+ TF S+L+VDK GRR LLL S   M
Sbjct: 339 INAVIFYSSRIFKEANTGI-GEQWATILIGIMQVVATFVSTLVVDKLGRRILLLASGCAM 397

Query: 180 AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
           A+   A+G YFYL   D   V+ LG LPVASL I+II+FS+G+GP+P +MMGELF  D+K
Sbjct: 398 AVATTAIGVYFYLQSQDPTQVESLGWLPVASLCIFIIMFSMGYGPVPWLMMGELFATDIK 457

Query: 240 GLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF 299
           G A       GSL                              L+ FVV KTFDD+    
Sbjct: 458 GFA-------GSL------------------------AGTSNWLLAFVVTKTFDDLNNGL 486

Query: 300 GTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASRK 356
           G G  F  FA   ++G FFV+F VPETK KSL +IQ EL+G +    A  +  A+ K
Sbjct: 487 GIGGTFWLFAGLTVLGVFFVFFAVPETKGKSLNEIQQELAGNRSNPSAVVSNGAAEK 543

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195021750|ref|XP_001985455.1| GH14492 [Drosophila grimshawi] gi|193898937|gb|EDV97803.1| GH14492 [Drosophila grimshawi]

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/340 (39%), Positives = 192/340 (56%), Gaps = 34/340 (10%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
           M+  GIL+ Y IG+    + +  + C ++P++  ++F  + PE+P YL+SK R + A  S
Sbjct: 222 MITIGILFVYGIGAGLNVFWM-SVVCGILPIIFGVIFFFM-PESPTYLVSKDRTQAAVNS 279

Query: 61  LLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
           +  LRG +YD   EL+EL K      + K +++E  +   T+KA  + +GL+ F   SGI
Sbjct: 280 IQWLRGQDYDYAPELEELHKTNREIRENKVNIMEALTRPVTIKALSISLGLMFFQQVSGI 339

Query: 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180
           N VIFY   I  A N+ I S +    ++G +QV+ TF S L+VDK GRR LLL S I MA
Sbjct: 340 NAVIFYSNAIFEAANTGIRS-DMSTILIGVMQVVATFVSVLVVDKLGRRILLLASGIVMA 398

Query: 181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240
           +   A+G YFY+   DEK VD LG LPV+SL ++I++FS+GFGP+P +MMGELF  D+KG
Sbjct: 399 LSTIAIGVYFYMKDQDEKSVDNLGWLPVSSLCVFIVMFSIGFGPVPWLMMGELFATDIKG 458

Query: 241 LALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG 300
            A  +      ++ F                               VV KTF ++    G
Sbjct: 459 FAGSIAGTTNWVLAF-------------------------------VVTKTFKNLNEGLG 487

Query: 301 TGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSG 340
           TG  F  FA   ++G  FV+F VPETK KSL +IQ EL+G
Sbjct: 488 TGGTFWLFAGLTLVGVIFVFFAVPETKGKSLNEIQQELAG 527

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195327241|ref|XP_002030330.1| GM24627 [Drosophila sechellia] gi|194119273|gb|EDW41316.1| GM24627 [Drosophila sechellia]

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 144/350 (41%), Positives = 195/350 (55%), Gaps = 40/350 (11%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLS--CLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAE 58
           M+  GIL+ Y +G+      I  LS  C ++P++   VF  + PE+P YL+SK R ++A 
Sbjct: 222 MITIGILFVYAVGA---GVNIFWLSIICGILPLIFGAVFFFM-PESPTYLVSKDRSENAI 277

Query: 59  KSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKA-TVKATIVIVGLLCFLSF 117
           KS+  LRG  YD   EL EL +E D + +  K  V    N+  T KA  + +GL+ F   
Sbjct: 278 KSIQWLRGKEYDYEPELAEL-RETDRETKANKVNVWAALNRPVTRKALAISMGLMFFQQV 336

Query: 118 SGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI 177
            GIN VIFY  RI +  N+ I    +   ++G +QV+ TF S+L+VDK GRR LLL S I
Sbjct: 337 CGINAVIFYASRIFLEANTGI-EAEWASILIGIMQVVATFVSTLVVDKLGRRILLLASGI 395

Query: 178 CMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD 237
            MA+   A+G YFYL K D   V  LG LPVASL ++II+FS+G+GP+P +MMGELF  D
Sbjct: 396 SMAVSTTAIGVYFYLQKQDRAQVVSLGWLPVASLCLFIIMFSIGYGPVPWLMMGELFATD 455

Query: 238 VKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVER 297
           +KG A       GSL                  G +         L+ FVV KTF ++  
Sbjct: 456 IKGFA-------GSL-----------------AGTS-------NWLLAFVVTKTFVNLND 484

Query: 298 AFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKA 347
             G G  F  FA   ++G  FV+F VPETK KSL +IQ EL+G +   +A
Sbjct: 485 GLGIGGTFWLFAGLTVLGVIFVFFAVPETKGKSLNEIQQELAGNRSTPQA 534

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428086|ref|XP_002062105.1| GK17357 [Drosophila willistoni] gi|194158190|gb|EDW73091.1| GK17357 [Drosophila willistoni]

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 196/347 (56%), Gaps = 36/347 (10%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
           M+  GIL+ Y IG+   D   + + C V+P++  ++F  + PE+P YL+SK R + A +S
Sbjct: 235 MITLGILFVYAIGAGL-DVFYMSVVCGVLPIIFGVIFFFM-PESPTYLVSKNRSESAVQS 292

Query: 61  LLILRGPNYDIHGELDELQKELDIQAQKKK-SLVEIYSNKATVKATIVIVGLLCFLSFSG 119
           +  LRG  YD   EL+EL  E D Q ++ K +++   +   T KA  + +GL+ F    G
Sbjct: 293 IQWLRGQQYDYAAELEELH-ETDRQIRENKVNVLSALNRPVTRKALAISLGLMFFQQVCG 351

Query: 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM 179
           IN VIFY K+I    N+ I S      +VG +QV+ TF S+L+VDK GRR LLL S I M
Sbjct: 352 INAVIFYSKKIFEDANTGI-SSGMSTILVGVMQVVATFVSTLVVDKLGRRILLLASGIVM 410

Query: 180 AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
           A+   A+G YFYL   DE  V+ +  LPVASL ++II+FS+G+GP+P +MMGELF  D+K
Sbjct: 411 ALSTTAIGVYFYLKDQDEDSVESITWLPVASLCVFIIMFSIGYGPVPWLMMGELFATDIK 470

Query: 240 GLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF 299
           G                        F   + G    V+        F+V KTF ++  + 
Sbjct: 471 G------------------------FAGSIAGTTNWVLA-------FIVTKTFTNLNDSL 499

Query: 300 GTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKK 346
           G G  F  FA   +IG FFV+F VPETK KSL +IQ EL+G +  ++
Sbjct: 500 GAGGTFWLFAGLTVIGVFFVFFAVPETKGKSLNEIQAELAGNRSTEQ 546

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198466442|ref|XP_002135189.1| GA23919 [Drosophila pseudoobscura pseudoobscura] gi|198150603|gb|EDY73816.1| GA23919 [Drosophila pseudoobscura pseudoobscura]

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 137/345 (39%), Positives = 195/345 (56%), Gaps = 40/345 (11%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLS--CLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAE 58
           M+  GIL+ Y +G+     ++  LS  C +IP++  ++F  + PE+P YL++K R + A 
Sbjct: 222 MITMGILFVYAVGA---GVSVFWLSVICGIIPIVFGVIFFFM-PESPTYLVAKGRSESAI 277

Query: 59  KSLLILRGPNYDIHGELDELQKELDIQAQKKK-SLVEIYSNKATVKATIVIVGLLCFLSF 117
           KS+  LRG  YD   E++EL +E D + ++ K +L    +   T KA  + +GL+ F   
Sbjct: 278 KSIQWLRGKEYDYAPEIEEL-RETDREIRENKVNLFAALNRPVTRKALAISLGLMFFQQL 336

Query: 118 SGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI 177
            GIN VIFY  +I +  N  I S  +   ++G +QV+ TF S+L+VDK GRR LLL S  
Sbjct: 337 CGINAVIFYSSKIFLDANIGIGS-EWATIMIGIMQVVATFVSTLVVDKLGRRILLLASGS 395

Query: 178 CMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD 237
            MA+   A+G YF+L   D+  VD LG LPVASL I+I++FS+G+GP+P +MMGELF  D
Sbjct: 396 VMALSTTAIGVYFFLQDQDQSKVDDLGWLPVASLCIFILMFSIGYGPVPWLMMGELFATD 455

Query: 238 VKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVER 297
           +KG A  +      L+ F                               VV KTFDD+  
Sbjct: 456 IKGFAGSIAGTSNWLLAF-------------------------------VVTKTFDDLND 484

Query: 298 AFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVK 342
           A G G  F  FA   ++G FFV+F VPETK KSL +IQ EL+G +
Sbjct: 485 ALGNGGTFWLFAGLTVLGVFFVFFAVPETKGKSLNEIQQELAGNR 529

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24663511|ref|NP_648605.1| CG10960, isoform B [Drosophila melanogaster] gi|7294533|gb|AAF49874.1| CG10960, isoform B [Drosophila melanogaster] gi|21428998|gb|AAM50218.1| HL01062p [Drosophila melanogaster] gi|220943584|gb|ACL84335.1| CG10960-PA [synthetic construct] gi|220953532|gb|ACL89309.1| CG10960-PA [synthetic construct]

 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 144/350 (41%), Positives = 195/350 (55%), Gaps = 40/350 (11%)

Query: 1   MVVSGILYTYVIGSLYEDYTIICLS--CLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAE 58
           M+  GIL+ Y +G+      I  LS  C ++P++   +F  + PE+P YL+SK R ++A 
Sbjct: 222 MITIGILFVYAVGA---GVKIFWLSIICGILPLIFGAIFFFM-PESPTYLVSKDRSENAI 277

Query: 59  KSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKA-TVKATIVIVGLLCFLSF 117
           KS+  LRG  YD   EL EL +E D + +  K  V    N+  T KA  + +GL+ F   
Sbjct: 278 KSIQWLRGKEYDYEPELAEL-RETDRETKANKVNVWAALNRPVTRKALAISMGLMFFQQV 336

Query: 118 SGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI 177
            GIN VIFY  RI +  N+ I    +   ++G +QV+ TF S+L+VDK GRR LLL S I
Sbjct: 337 CGINAVIFYASRIFLEANTGI-EAEWATILIGIMQVVATFVSTLVVDKLGRRILLLASGI 395

Query: 178 CMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD 237
            MAI   A+G YF+L K D   V  LG LPVASL ++II+FS+G+GP+P +MMGELF  D
Sbjct: 396 SMAISTTAIGVYFFLQKQDAAQVVSLGWLPVASLCLFIIMFSIGYGPVPWLMMGELFATD 455

Query: 238 VKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVER 297
           +KG A       GSL                  G +         L+ FVV KTF ++  
Sbjct: 456 IKGFA-------GSL-----------------AGTS-------NWLLAFVVTKTFVNLND 484

Query: 298 AFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKA 347
             G G  F  FA   ++G  FVYF VPETK KSL +IQ EL+G +   +A
Sbjct: 485 GLGIGGTFWLFAGLTVVGVIFVYFAVPETKGKSLNEIQQELAGNRSTPQA 534

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
FB|FBgn0036316	539	CG10960 [Drosophila melanogast	0.688	0.474	0.429	1.8e-62
FB|FBgn0037386	502	CG1208 [Drosophila melanogaste	0.685	0.507	0.4	1.1e-54
FB|FBgn0034247	465	CG6484 [Drosophila melanogaste	0.682	0.546	0.387	4.2e-51
FB|FBgn0037387	491	CG1213 [Drosophila melanogaste	0.672	0.509	0.351	3.3e-49
UNIPROTKB|B4HNS1	488	Tret1-2 "Facilitated trehalose	0.771	0.588	0.358	1.8e-39
UNIPROTKB|B4QBN3	488	Tret1-2 "Facilitated trehalose	0.771	0.588	0.361	2.3e-39
FB|FBgn0028560	444	sut4 "sugar transporter 4" [Dr	0.658	0.551	0.360	4.8e-39
UNIPROTKB|A9ZSY2	502	Tret1 "Facilitated trehalose t	0.672	0.498	0.376	7.8e-39
FB|FBgn0033644	488	Tret1-2 "Trehalose transporter	0.774	0.590	0.349	1.3e-38
UNIPROTKB|Q7PIR5	793	Tret1 "Facilitated trehalose t	0.768	0.360	0.370	1.5e-37

FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)]

 Score = 489 (177.2 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
 Identities = 112/261 (42%), Positives = 159/261 (60%)

Query:     1 MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
             M+  GIL+ Y +G+  + + +  + C ++P++   +F  + PE+P YL+SK R ++A KS
Sbjct:   222 MITIGILFVYAVGAGVKIFWLSII-CGILPLIFGAIFFFM-PESPTYLVSKDRSENAIKS 279

Query:    61 LLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNK-ATVKATIVIVGLLCFLSFSG 119
             +  LRG  YD   EL EL +E D + +  K  V    N+  T KA  + +GL+ F    G
Sbjct:   280 IQWLRGKEYDYEPELAEL-RETDRETKANKVNVWAALNRPVTRKALAISMGLMFFQQVCG 338

Query:   120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM 179
             IN VIFY  RI +  N+ I    +   ++G +QV+ TF S+L+VDK GRR LLL S I M
Sbjct:   339 INAVIFYASRIFLEANTGI-EAEWATILIGIMQVVATFVSTLVVDKLGRRILLLASGISM 397

Query:   180 AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
             AI   A+G YF+L K D   V  LG LPVASL ++II+FS+G+GP+P +MMGELF  D+K
Sbjct:   398 AISTTAIGVYFFLQKQDAAQVVSLGWLPVASLCLFIIMFSIGYGPVPWLMMGELFATDIK 457

Query:   240 GLALGVICILGSLIEFVVVKT 260
             G A  +      L+ FVV KT
Sbjct:   458 GFAGSLAGTSNWLLAFVVTKT 478

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

FB|FBgn0037386 CG1208 [Drosophila melanogaster (taxid:7227)]

 Score = 476 (172.6 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 106/265 (40%), Positives = 162/265 (61%)

Query:     1 MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
             ++  GIL+ YV+G+L   +  + L CL+IP+L LLV L + PETPVYLL   +R +A ++
Sbjct:   200 LLTIGILFIYVVGALVS-WKTLSLLCLIIPIL-LLVGLFIVPETPVYLLKNGKRSEANRA 257

Query:    61 LLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
             L  L G   +    +  +Q +LD Q     S+ +++SN+A+    ++ V L+ F  FSGI
Sbjct:   258 LKWLWGDYCNTSNAIQAIQNDLD-QTGVDASVKDLFSNRASRNGMVISVLLMVFQQFSGI 316

Query:   121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180
             N VIF++  I    +S  ++PN    +VG +QVIMT  SSLL++KAGR+ LL+ S   M 
Sbjct:   317 NAVIFFMNEIF--ESSSTLNPNVCTIVVGVVQVIMTLASSLLIEKAGRKILLIFSSTIMT 374

Query:   181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240
             +C+  LG Y  + +  + L   +G LP+  + ++I+ FSVG+GPIP +MMGELF PDVKG
Sbjct:   375 VCLAMLGAYNTINRHTD-LSQSIGWLPLLCIVLFIVSFSVGYGPIPWMMMGELFMPDVKG 433

Query:   241 LALGVICILGSLIEFVVVKTVRHRF 265
             +A+     L  ++ +V V  V   F
Sbjct:   434 IAVS----LSVMMNWVCVSLVTWLF 454

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0034247 CG6484 [Drosophila melanogaster (taxid:7227)]

 Score = 422 (153.6 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
 Identities = 100/258 (38%), Positives = 147/258 (56%)

Query:     1 MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
             ++VSG+LY Y++G+     TI  L C ++PV+  ++   + PE+PVYL  K R  DA K+
Sbjct:   147 LIVSGVLYGYLVGAFLPLLTINIL-CAILPVIFAIIHFFM-PESPVYLAMKGRNDDAAKA 204

Query:    61 LLILRGPNYDIHGELDELQKELDIQAQKKK-SLVEIYSNKATVKATIVIVGLLCFLSFSG 119
             L  LRG + DI  EL E+ +E   Q    + +++        +K   + V L  F  ++G
Sbjct:   205 LQWLRGKDADIDDELKEILEESQKQIDMPQVNILSSLRRPIVLKGLGIAVLLQVFQQWTG 264

Query:   120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM 179
             IN V+FY   I   T S I S +    I+G  QV  T  +  ++DKAGRR LLLIS + M
Sbjct:   265 INAVLFYSASIFEDTGSDI-SGSDATLIIGVTQVTSTLVAVAIIDKAGRRILLLISGVLM 323

Query:   180 AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
             A+    +G YF L + D   +D  G LP++S+ I+II FS+GFGP+P ++M ELF+ DVK
Sbjct:   324 AVSTALMGVYFQLKENDPASMDNFGWLPISSICIFIIFFSIGFGPVPWLVMAELFSEDVK 383

Query:   240 GLALGVICILGSLIEFVV 257
              +A  +      L  FVV
Sbjct:   384 SVAGSIAGTSNWLSAFVV 401

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0037387 CG1213 [Drosophila melanogaster (taxid:7227)]

 Score = 402 (146.6 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 91/259 (35%), Positives = 151/259 (58%)

Query:     2 VVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSL 61
             +V GILY Y IG  Y  Y  +   C+V+PV+  LVF ++ PE+P +   K R+ +A KSL
Sbjct:   185 IVGGILYVYAIGP-YVSYQALQWCCIVVPVVFDLVFYMM-PESPYFFAGKGRKSEALKSL 242

Query:    62 LILRGPNYD-IHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
               LRG + + +H E+ E+Q  ++     K ++++++ N    +A  +  GL+ F   SGI
Sbjct:   243 QFLRGQSAEGVHDEMAEIQANVEEAMASKGTVMDLFKNAGNRRALFICAGLISFQQLSGI 302

Query:   121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180
             NVV+F  + I  + N+ +  P     I+G +QV  +  + L+ D+ GR+ +LL S   M+
Sbjct:   303 NVVLFNSQSIFASANTGL-DPAIATIIIGCVQVGSSALTPLVADRLGRKVMLLTSSSVMS 361

Query:   181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240
             I + ALG +FY+ +L +  +  +  +PV +L IY IV+  GFGP+P  ++GE+F  ++K 
Sbjct:   362 IGLAALGAFFYM-QLVKGDISSVVWMPVPALIIYNIVYCTGFGPLPWAVLGEMFPANIKS 420

Query:   241 LALGVI---C-ILGSLIEF 255
             +A  V+   C  LG L+ F
Sbjct:   421 VASSVVASTCWTLGFLVTF 439

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|B4HNS1 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila sechellia (taxid:7238)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 109/304 (35%), Positives = 162/304 (53%)

Query:     5 GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
             GIL  YV GS + +++I+      +PV   L+ +I+ PETP + +++ + + A K+L  L
Sbjct:   170 GILVCYVAGS-FMNWSILAFLGAALPV-PFLILMIIIPETPRWFVNRGQEERARKALKWL 227

Query:    65 RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
             RG   D+  EL +L   Q E D QA +   L E++  +  +K   + +GL+ F  FSGIN
Sbjct:   228 RGKEADVEPELKDLMQSQAEADSQATRNTCL-ELFK-RINLKPLSISLGLMFFQQFSGIN 285

Query:   122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
              VIFY  +I     S I S N    IVG +    TF   +L+D+ GR+ LL +SDI M +
Sbjct:   286 AVIFYTVQIFKDAGSTIDS-NLCTIIVGIVNFFATFMGIILIDRLGRKILLYVSDIAMIL 344

Query:   182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
              +  LG +FY  K     V  LG LP++   IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct:   345 TLSILGGFFYC-KAHGPDVSHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGP 403

Query:   242 ALGVICILGSLIEFVVVKTVRH---RFTPDVKGLALGVICILGSLIEFVVV-----KTFD 293
             A  V+        FVV KT +       P       GV+CI+G     + V     K+ +
Sbjct:   404 AASVVTAFNWFCTFVVTKTFQDLTVAMGPHGAFWLFGVVCIVGLFFVIIYVPETRGKSLE 463

Query:   294 DVER 297
             ++ER
Sbjct:   464 EIER 467

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 110/304 (36%), Positives = 162/304 (53%)

Query:     5 GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
             GIL  YV GS + +++++      +PV   L+ +I+ PETP + +++ + + A K+L  L
Sbjct:   170 GILVCYVAGS-FMNWSMLAFLGAALPV-PFLILMIIIPETPRWFVNRGQEERARKALKWL 227

Query:    65 RGPNYDIHGELDEL---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
             RG   D+  EL +L   Q E D QA++   L E++  +  +K   + +GL+ F  FSGIN
Sbjct:   228 RGKEADVEPELKDLMQSQAEADSQARRNTCL-ELFK-RINLKPLSISLGLMFFQQFSGIN 285

Query:   122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
              VIFY  +I     S I S N    IVG +    TF   LL+D+ GR+ LL ISDI M +
Sbjct:   286 AVIFYTVQIFKDAGSTIDS-NLCTIIVGIVNFFATFMGILLIDRLGRKILLYISDIAMIL 344

Query:   182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
              +  LG +FY  K     V  LG LP+    IYI+ FS+GFGPIP +MMGE+    ++G 
Sbjct:   345 TLSILGGFFYC-KAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGP 403

Query:   242 ALGVICILGSLIEFVVVKTVRH-RFTPDVKGL--ALGVICILGSLIEFVVV-----KTFD 293
             A  V+        FVV KT +         G     GV+CI+G     + V     K+ +
Sbjct:   404 AASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGVVCIVGLFFVIICVPETRGKSLE 463

Query:   294 DVER 297
             ++ER
Sbjct:   464 EIER 467

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

FB|FBgn0028560 sut4 "sugar transporter 4" [Drosophila melanogaster (taxid:7227)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 93/258 (36%), Positives = 146/258 (56%)

Query:     1 MVVSGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKS 60
             ++V GILY +V+G   + +    ++C ++PV+   V +I  PE+P++L  K + + AEKS
Sbjct:   144 LIVFGILYAFVVGGFVKTF-YFNIACAILPVI-FFVLMIFMPESPIFLAQKGKAEKAEKS 201

Query:    61 LLILRGPNYDIHGELDELQKELDIQAQKKKSLV-EIYSNKATVKATIVIVGLLCFLSFSG 119
             L  LRG + D+ GEL    KE+  + QK+K+ V +I   + T+K   + +GL+ F   +G
Sbjct:   202 LKFLRGKDADVSGEL----KEMSAEGQKEKASVGKILCRRITLKGLFLSIGLMLFQQMTG 257

Query:   120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM 179
             IN +IFY    +  T    + P     IVG +Q I T  S L+++K GR+ LLL+S   M
Sbjct:   258 INAIIFY-STFIFETAGSTLEPRISTIIVGIVQAIATIISILVIEKVGRKILLLVSACMM 316

Query:   180 AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239
              I    +  YF +L     +  G+G L + ++ ++II FS+GFGP+P +MM ELF  DVK
Sbjct:   317 GISTLIMALYFGML-----MKSGVGWLALIAVCVFIIGFSLGFGPVPWLMMAELFAEDVK 371

Query:   240 GLALGVICILGSLIEFVV 257
              LA  +         F+V
Sbjct:   372 ALAGSIAGTTNWCFAFIV 389

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 98/260 (37%), Positives = 151/260 (58%)

Query:     4 SGILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLI 63
             SGIL  +  G +Y  +  + L    IP++ L++  ++ PETP + +SK + K+A KSL  
Sbjct:   183 SGILMCFTAG-MYLAWRNLALLGACIPIIFLILMFLI-PETPRWYISKGKIKEARKSLQW 240

Query:    64 LRGPNYDIHGELDELQKELDIQAQK---KKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
             LRG   DI  ELD +QK + I++++   + +L+E++  K  +K   + +GL+ F  FSGI
Sbjct:   241 LRGKTADISEELDSIQK-MHIESERIATEGALIELF-RKNHIKPVFISLGLMFFQQFSGI 298

Query:   121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180
             N VIFY  +I   + S +   N    IVG +  I TF +++++D+ GR+ LL IS I M 
Sbjct:   299 NAVIFYTVQIFKDSGSTV-DENLSTIIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMC 357

Query:   181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240
             I +   G +FY+ +L +  V   G +P+ SL +Y+I FS GFGPIP +MMGE+    ++G
Sbjct:   358 ITLFTFGTFFYVKELMD--VTAFGWIPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRG 415

Query:   241 LALGVICILGSLIEFVVVKT 260
              A  V         FVV KT
Sbjct:   416 TAASVATAFNWSCTFVVTKT 435

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 106/303 (34%), Positives = 159/303 (52%)

Query:     5 GILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLIL 64
             GIL  YV GS + +++++      +PV   L+ +I+ PETP + +++ + + A K+L  L
Sbjct:   170 GILVCYVAGS-FMNWSMLAFLGAALPV-PFLILMIIIPETPRWFVNRGQEERARKALKWL 227

Query:    65 RGPNYDIHGELDEL-QKELDIQAQK-KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINV 122
             RG   D+  EL EL Q + D   Q  + + +E++     +K   + +GL+ F  FSGIN 
Sbjct:   228 RGKEADVEPELKELMQSQADADRQATQNTCLELFKRN-NLKPLSISLGLMFFQQFSGINA 286

Query:   123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAIC 182
             VIFY  +I     S I S N    IVG +    TF   +L+D+ GR+ LL +SDI M + 
Sbjct:   287 VIFYTVQIFKDAGSTIDS-NLSTIIVGVVNFFATFMGIILIDRLGRKILLYVSDIAMIVT 345

Query:   183 IGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLA 242
             +  LG +FY  K     V  LG LP+    IYI+ FS+GFGPIP +MMGE+    ++G A
Sbjct:   346 LSILGGFFYC-KAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPA 404

Query:   243 LGVICILGSLIEFVVVKTVRH-RFTPDVKGL--ALGVICILGSLIEFVVV-----KTFDD 294
               V+        FVV KT +         G     G ICI+G     + V     K+ ++
Sbjct:   405 ASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGLFFVIIFVPETRGKSLEE 464

Query:   295 VER 297
             +ER
Sbjct:   465 IER 467

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0005353 "fructose transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

UNIPROTKB|Q7PIR5 Tret1 "Facilitated trehalose transporter Tret1" [Anopheles gambiae (taxid:7165)]

 Score = 411 (149.7 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 113/305 (37%), Positives = 163/305 (53%)

Query:     5 GILYTYVIGSLYEDYTIICL--SCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLL 62
             GIL  +V G  Y D++ +    + L IP L LL+FLI  PETP + +S+ R   A K+L 
Sbjct:   474 GILLCFVAGK-YLDWSGLAFLGAALPIPFL-LLMFLI--PETPRWYVSRNREDRARKALQ 529

Query:    63 ILRGPNYDIHGELDELQKE-LDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN 121
              LRG   D+  EL  + K   D +     S +    NKA +K  ++ +GL+ F   SGIN
Sbjct:   530 WLRGRKADVEPELKGISKSHQDAERHASSSAMLDLLNKANLKPLLISLGLMFFQQLSGIN 589

Query:   122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181
              VIFY  +I  +  S I        IVG +  I TF +++L+D+ GR+ LL ISD+ M I
Sbjct:   590 AVIFYTVQIFQSAGSTI-DEKLCTIIVGVVNFIATFIATVLIDRLGRKILLYISDVAMII 648

Query:   182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241
              +  LG +FY+ K +   V  +G LP+A+  ++++ FS+GFGPIP +MMGE+    ++G 
Sbjct:   649 TLMTLGTFFYM-KNNGDDVSEIGWLPLAAFVVFVVGFSLGFGPIPWLMMGEILPGKIRGS 707

Query:   242 ALGVICILGSLIEFVVVKTVRHRFTPDV--KGL--ALGVICILGSLIEFVVV-----KTF 292
             A  V         FVV KT     T  +   G     G ICI+G L   V V     K+ 
Sbjct:   708 AASVATAFNWSCTFVVTKTFAD-ITASIGNHGAFWMFGSICIVGLLFVIVYVPETQGKSL 766

Query:   293 DDVER 297
             +D+ER
Sbjct:   767 EDIER 771

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P58354	GTR8_BOVIN	No assigned EC number	0.3053	0.7983	0.6213	yes	N/A
Q9NY64	GTR8_HUMAN	No assigned EC number	0.3081	0.7956	0.6205	yes	N/A
Q0WQ63	ERDL8_ARATH	No assigned EC number	0.3076	0.7876	0.6234	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	372
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	4e-37
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-35
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-26
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	6e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-04
COG2211	467	COG2211, MelB, Na+/melibiose symporter and related	1e-04

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  139 bits (352), Expect = 4e-37
 Identities = 92/345 (26%), Positives = 148/345 (42%), Gaps = 45/345 (13%)

Query: 1   MVVSGILYTYVIGSL-----YED-YTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRR 54
            +  GIL  Y  GS          + I     L+   L L + L   PE+P +L+ K R 
Sbjct: 171 AITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRV 229

Query: 55  KDAEKSLLILRGPNYDIHGELDELQ-----KELDIQAQKKKSLVEIYSNKATVKATIVIV 109
           ++A KSL  LRG + +    LDEL+     + ++ ++ +        S +   +   + V
Sbjct: 230 EEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGV 289

Query: 110 GLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169
            L  F  F+GIN +++Y   I                IVG +    TF +  LVD+ GRR
Sbjct: 290 VLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR 349

Query: 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVM 229
           PLLLI    MAIC+  LG                G + +  + ++I  F++G+GP+P V+
Sbjct: 350 PLLLIGAAGMAICLFVLGILGA--SFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVI 407

Query: 230 MGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVV 289
           + E+F   ++                              KG+++ V      L  F+V 
Sbjct: 408 VSEIFPLSLRP-----------------------------KGISIAVAANW--LANFIVG 436

Query: 290 KTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQI 334
             F  +  + G G  F  F    ++G  FVYF +PETK ++L++I
Sbjct: 437 FLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  133 bits (337), Expect = 4e-35
 Identities = 92/342 (26%), Positives = 154/342 (45%), Gaps = 47/342 (13%)

Query: 1   MVVSGILYTYVIG-----SLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRK 55
            +  GIL   +IG         D   I L    +P + LL+ L+  PE+P +L+ K + +
Sbjct: 145 GITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLE 204

Query: 56  DAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLV-EIYSNKATVKATIVIVGLLCF 114
           +A   L  LRG + D+  E+ E +  L+   + +K+   E++  K   +  ++ V L  F
Sbjct: 205 EARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIF 263

Query: 115 LSFSGINVVIFYLKRILIATNSKIISPNYGQNI-VGFIQVIMTFFSSLLVDKAGRRPLLL 173
              +GIN + +Y   I     +  +S +    I VG +  + TF +  LVD+ GRRPLLL
Sbjct: 264 QQLTGINAIFYYSPTIF---ETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLL 320

Query: 174 ISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL 233
           +    MAIC   L     LL + +    G+  +    + ++I  F++G+GP+P V++ EL
Sbjct: 321 LGAAGMAIC--FLVLGVALLGVAKSKGAGIVAI--VFILLFIAFFALGWGPVPWVIVSEL 376

Query: 234 FTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFD 293
           F   V+  A+ +      L  F++         P           I+   I   V     
Sbjct: 377 FPLGVRPKAMAIATAANWLANFLIG-----FLFP-----------IITGAIGGYV----- 415

Query: 294 DVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQ 335
                      F  FA   ++   FV+F VPETK ++L++I 
Sbjct: 416 -----------FLVFAGLLVLFILFVFFFVPETKGRTLEEID 446

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  110 bits (276), Expect = 1e-26
 Identities = 80/326 (24%), Positives = 143/326 (43%), Gaps = 53/326 (16%)

Query: 28  VIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQ 87
            IP L  L+ L   PETP YL+S+ +++ AE  L  + G        L E++  LD   +
Sbjct: 201 AIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-LATQALQEIKHSLDHGRK 259

Query: 88  KKKSLVEIYSNKATVKATIVIVGLL--CFLSFSGINVVIFYLKRIL----IATNSKIISP 141
               L+            ++++G++   F  F GINVV++Y   I      +T+  ++  
Sbjct: 260 TGGKLL-------MFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQ- 311

Query: 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201
                IVG I +  T  + + VDK GR+PL +I  + MAI + +LG  FY          
Sbjct: 312 ---TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--------TQ 360

Query: 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTV 261
             G++ + S+  Y+  F++ +GP+  V++ E+F   ++G AL +      +  + V  T 
Sbjct: 361 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWT- 419

Query: 262 RHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF 321
                                   F ++     +   F  G ++  +    ++   F++ 
Sbjct: 420 ------------------------FPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455

Query: 322 VVPETKNKSLQQIQDELSGVKKKKKA 347
            VPETK K+L+++  E     + KK 
Sbjct: 456 FVPETKGKTLEEM--EALWEPETKKT 479

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 37/226 (16%), Positives = 78/226 (34%), Gaps = 33/226 (14%)

Query: 104 ATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLV 163
             + +   L  L    ++  +  L   L  + S+        +       + +  +  L 
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA---GLIVSAFSLGYALGSLLAGYLS 58

Query: 164 DKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFG 223
           D+ GRR +LL+  +  A  +G+L   F                 +  L +   +  +G G
Sbjct: 59  DRFGRRRVLLLGLLLFA--LGSLLLAF--------------ASSLWLLLVGRFLLGLGGG 102

Query: 224 ---PIPGVMMGELFTPDVKGLALGVICI---LGSLIEFVVVKTVRHRFTPDVKGLALGVI 277
              P    ++ E F P  +G ALG+      LG+L+  ++   +          L L ++
Sbjct: 103 ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAIL 162

Query: 278 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV 323
            +L +L+   +++            +A   F +         Y  +
Sbjct: 163 GLLLALLLLFLLRLL--------LLLALAFFLLSFGYYGLLTYLPL 200

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 16/184 (8%)

Query: 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIV-GFIQVIMTFFSSLLV 163
            ++++ L  FL   G   ++ YL   L        +       + G   ++      LL 
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235

Query: 164 DKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFG 223
           D+ GRR LLL+  I + +    L        L          L + +L +        F 
Sbjct: 236 DRLGRRRLLLL--IGLLLAALGLLLLALAPSL---------ALLLVALLLLGFGLGFAFP 284

Query: 224 PIPGVMMGELFTPDVKGLALGVICILGSLIEFV---VVKTVRHRFTPDVKGLALGVICIL 280
            +   +  EL  P+ +G A G+    GSL   +   +   +          L L  + +L
Sbjct: 285 ALL-TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL 343

Query: 281 GSLI 284
            +L+
Sbjct: 344 AALL 347

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 52/277 (18%), Positives = 97/277 (35%), Gaps = 42/277 (15%)

Query: 89  KKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN--VVIFYLKRILIATNSKIISPNYGQN 146
           K S + I+ N+  +   ++++  L       I   ++++Y+  +L       +       
Sbjct: 226 KDSFLLIFKNRPLL---LLLLMNLLLFIAFNIRGSIMVYYVTYVL---GDPELFAYLLLL 279

Query: 147 IVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLL 206
             G   +I       LV K G++ L LI    + + +G L  YF                
Sbjct: 280 ASGAGLLIGLILWPRLVKKFGKKKLFLIG--LLLLAVGYLLLYF------------TPAG 325

Query: 207 PVASLAIYIIVFSVGFG---PIPGVMMGELFTPDVKGLALGVIC--ILGSLIEFVVVKTV 261
            V  + + +I+  VG G   P+P  M+    T D      GV    I+ S + F   K  
Sbjct: 326 SVVLIVVALIIAGVGTGIANPLPWAMVA--DTVDYGEWKTGVRREGIVYSGMTF-FRKLG 382

Query: 262 RHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF 321
                     LA  +   +   I +V   +       FG    F       ++    + F
Sbjct: 383 L--------ALAGFIPGWILGAIGYVPNVSAQSASALFGIRFLFIILPALLLLLAAIIIF 434

Query: 322 VVPETKNKSLQQIQDELSGVKKKKKARRTGSASRKST 358
                + K  ++I +EL    ++K A      +++ T
Sbjct: 435 FYKLNE-KMHKEIIEELE---QRKAAGSQQPTAKEVT 467

Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
KOG0569|consensus	485		100.0
KOG0254|consensus	513		99.95
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.94
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.93
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.92
KOG0253|consensus	528		99.91
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.9
TIGR00898	505	2A0119 cation transport protein.	99.89
PRK10642	490	proline/glycine betaine transporter; Provisional	99.85
KOG0252|consensus	538		99.84
KOG0255|consensus	521		99.79
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.76
PRK11663	434	regulatory protein UhpC; Provisional	99.73
PRK09952	438	shikimate transporter; Provisional	99.73
PRK12307	426	putative sialic acid transporter; Provisional	99.72
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.72
PRK03893	496	putative sialic acid transporter; Provisional	99.71
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.71
TIGR00893	399	2A0114 d-galactonate transporter.	99.7
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.7
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.7
PRK10489	417	enterobactin exporter EntS; Provisional	99.7
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.68
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.68
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.67
TIGR00891	405	2A0112 putative sialic acid transporter.	99.66
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.66
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.66
PRK09528	420	lacY galactoside permease; Reviewed	99.65
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.65
PRK15011	393	sugar efflux transporter B; Provisional	99.65
PRK03545	390	putative arabinose transporter; Provisional	99.65
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.65
PRK15075	434	citrate-proton symporter; Provisional	99.64
TIGR00895	398	2A0115 benzoate transport.	99.64
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.64
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.64
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.63
TIGR00895	398	2A0115 benzoate transport.	99.62
PRK09705	393	cynX putative cyanate transporter; Provisional	99.62
PRK11663	434	regulatory protein UhpC; Provisional	99.61
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.61
TIGR00893	399	2A0114 d-galactonate transporter.	99.6
PRK03545	390	putative arabinose transporter; Provisional	99.59
KOG2533|consensus	495		99.59
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.59
PRK11010	491	ampG muropeptide transporter; Validated	99.59
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.57
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.57
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.57
KOG2532|consensus	466		99.57
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.56
TIGR00891	405	2A0112 putative sialic acid transporter.	99.56
PRK05122	399	major facilitator superfamily transporter; Provisi	99.56
PLN00028	476	nitrate transmembrane transporter; Provisional	99.56
PRK09874	408	drug efflux system protein MdtG; Provisional	99.55
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.55
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.55
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.55
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.55
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.55
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.54
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.54
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.54
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.54
PRK10091	382	MFS transport protein AraJ; Provisional	99.53
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.53
PRK10091	382	MFS transport protein AraJ; Provisional	99.53
PRK12307	426	putative sialic acid transporter; Provisional	99.53
PRK10054	395	putative transporter; Provisional	99.53
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.53
PLN00028	476	nitrate transmembrane transporter; Provisional	99.52
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.52
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.52
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.52
PRK12382	392	putative transporter; Provisional	99.51
PRK10504	471	putative transporter; Provisional	99.51
KOG1330|consensus	493		99.51
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.51
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.5
PRK10504	471	putative transporter; Provisional	99.5
PRK09874	408	drug efflux system protein MdtG; Provisional	99.5
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.5
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.49
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.49
TIGR00900	365	2A0121 H+ Antiporter protein.	99.49
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.48
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.48
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.47
PRK11902	402	ampG muropeptide transporter; Reviewed	99.47
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.47
TIGR00900	365	2A0121 H+ Antiporter protein.	99.47
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.47
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.47
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.47
PRK03699	394	putative transporter; Provisional	99.47
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.46
PRK10489	417	enterobactin exporter EntS; Provisional	99.46
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.45
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.45
PRK03699	394	putative transporter; Provisional	99.45
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.45
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.45
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.45
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.45
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.45
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.45
PRK03633	381	putative MFS family transporter protein; Provision	99.44
PRK03893	496	putative sialic acid transporter; Provisional	99.44
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.44
PRK11043	401	putative transporter; Provisional	99.43
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.43
PRK11043	401	putative transporter; Provisional	99.43
PRK10642	490	proline/glycine betaine transporter; Provisional	99.41
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.41
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.41
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.4
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.4
PRK05122	399	major facilitator superfamily transporter; Provisi	99.39
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.39
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.38
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.38
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.37
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.37
PRK12382	392	putative transporter; Provisional	99.37
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.37
TIGR00901	356	2A0125 AmpG-related permease.	99.36
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.36
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.35
PRK10054	395	putative transporter; Provisional	99.35
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.35
PRK09705	393	cynX putative cyanate transporter; Provisional	99.34
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.34
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.34
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.33
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.33
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.33
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.33
TIGR00898	505	2A0119 cation transport protein.	99.32
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.31
PRK10429	473	melibiose:sodium symporter; Provisional	99.31
PRK15075	434	citrate-proton symporter; Provisional	99.3
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.3
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.3
PRK09952	438	shikimate transporter; Provisional	99.3
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.29
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.29
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.29
PRK09848	448	glucuronide transporter; Provisional	99.28
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.28
PTZ00207	591	hypothetical protein; Provisional	99.28
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.26
TIGR00805	633	oat sodium-independent organic anion transporter.	99.25
PRK09528	420	lacY galactoside permease; Reviewed	99.25
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.25
PRK10133	438	L-fucose transporter; Provisional	99.24
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.24
KOG2615|consensus	451		99.24
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.23
PRK03633	381	putative MFS family transporter protein; Provision	99.23
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.23
PRK10133	438	L-fucose transporter; Provisional	99.22
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.22
KOG2504|consensus	509		99.21
KOG2532|consensus	466		99.21
KOG0569|consensus	485		99.21
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.2
PRK15011	393	sugar efflux transporter B; Provisional	99.19
PRK09669	444	putative symporter YagG; Provisional	99.18
TIGR00901	356	2A0125 AmpG-related permease.	99.18
PF13347	428	MFS_2: MFS/sugar transport protein	99.18
PRK11902	402	ampG muropeptide transporter; Reviewed	99.18
COG2211	467	MelB Na+/melibiose symporter and related transport	99.17
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.16
KOG0255|consensus	521		99.16
PRK11462	460	putative transporter; Provisional	99.15
PRK11010	491	ampG muropeptide transporter; Validated	99.14
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.13
KOG3764|consensus	464		99.1
KOG0254|consensus	513		99.09
KOG2533|consensus	495		99.09
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.09
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.09
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.07
KOG2504|consensus	509		99.07
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.07
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.06
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.06
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.06
KOG1330|consensus	493		99.06
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.05
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.04
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.04
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.96
KOG0252|consensus	538		98.95
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.95
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.94
KOG2563|consensus	480		98.93
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.89
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.88
KOG0253|consensus	528		98.87
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.87
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.82
KOG3762|consensus	618		98.73
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.72
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.69
PRK09669	444	putative symporter YagG; Provisional	98.69
KOG4686|consensus	459		98.68
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.66
KOG2816|consensus	463		98.64
PTZ00207	591	hypothetical protein; Provisional	98.64
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.62
PRK10429	473	melibiose:sodium symporter; Provisional	98.61
KOG3764|consensus	464		98.58
PF13347	428	MFS_2: MFS/sugar transport protein	98.52
PRK11462	460	putative transporter; Provisional	98.5
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.48
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.44
KOG3626|consensus	735		98.43
KOG2325|consensus	488		98.43
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.4
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.39
KOG2615|consensus	451		98.28
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.23
PRK09848	448	glucuronide transporter; Provisional	98.22
TIGR00805	633	oat sodium-independent organic anion transporter.	98.2
PF12832	77	MFS_1_like: MFS_1 like family	98.19
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.17
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.11
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.1
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.09
COG2211	467	MelB Na+/melibiose symporter and related transport	98.07
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.98
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.95
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.94
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.79
KOG2563|consensus	480		97.77
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.7
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.48
KOG2816|consensus	463		97.41
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.4
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.37
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.36
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.3
KOG3626|consensus	735		97.24
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.15
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.14
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.08
COG0477	338	ProP Permeases of the major facilitator superfamil	97.0
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.98
KOG2325|consensus	488		96.7
KOG0637|consensus	498		96.66
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.42
KOG3098|consensus	461		96.17
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.09
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	95.66
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.59
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.46
KOG3810|consensus	433		95.45
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.43
KOG4686|consensus	459		95.35
KOG3762|consensus	618		95.27
KOG1237|consensus	571		95.1
KOG3098|consensus	461		95.01
KOG4332|consensus	454		94.87
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	94.86
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	94.76
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.71
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	94.45
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	92.85
COG3202	509	ATP/ADP translocase [Energy production and convers	92.57
KOG3574|consensus	510		92.48
KOG0637|consensus	498		91.63
PRK03612	521	spermidine synthase; Provisional	91.21
KOG1479|consensus	406		89.39
KOG1479|consensus	406		88.9
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	88.45
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.45
KOG3574|consensus	510		85.25
KOG2881|consensus	294		85.0
PRK10697	118	DNA-binding transcriptional activator PspC; Provis	81.98
KOG4332|consensus	454		81.01

>KOG0569|consensus

Probab=100.00  E-value=5.7e-34  Score=262.22  Aligned_cols=299  Identities=28%  Similarity=0.413  Sum_probs=251.5

Q ss_pred             echhhHHhhhhh--------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHh-cCCHHHHHHHHHHHcCCCcchHHH
Q psy17630          4 SGILYTYVIGSL--------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLS-KKRRKDAEKSLLILRGPNYDIHGE   74 (372)
Q Consensus         4 ~G~~~~~~i~~~--------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~-~~~~~~a~~~~~~~~~~~~~~~~~   74 (372)
                      +|.+++..++..        |++.+.+.    .++.++.++...++|||||||.. |++.+||++.++.+++.+++.++.
T Consensus       163 ~g~ll~~~~~l~~ilGt~~~W~~l~~~~----~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~  238 (485)
T KOG0569|consen  163 IGILLGQVLGLPSLLGTEDLWPYLLAFP----LIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEI  238 (485)
T ss_pred             HHHHHHHHHccHHhcCCCcchHHHHHHH----HHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHH
Confidence            455555444433        99999999    55555588999999999999988 899999999999999987644333


Q ss_pred             HHHHHHHHHH--hhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHH
Q psy17630         75 LDELQKELDI--QAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQ  152 (372)
Q Consensus        75 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  152 (372)
                      .+..++.+++  +++++.+++++++++..|+...+.+.+....+++|.+...+|...++++.|++..++.+.+...++..
T Consensus       239 e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~  318 (485)
T KOG0569|consen  239 EEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVN  318 (485)
T ss_pred             HHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3322222222  22366789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeecc
Q psy17630        153 VIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGE  232 (372)
Q Consensus       153 ~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  232 (372)
                      .+.++++.++.||+|||+.++.++.++.++.+++..........+   +...+..+...+++...++.+.+|++|.+.+|
T Consensus       319 ~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~---~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aE  395 (485)
T KOG0569|consen  319 LLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG---SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAE  395 (485)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHH
Confidence            999999999999999999999999999998888776655444320   11223446777788888999999999999999


Q ss_pred             CCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHH
Q psy17630        233 LFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC  312 (372)
Q Consensus       233 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  312 (372)
                      ++|++.|+.++++.....++..++...                               .++.+.+..|. ..|+++.+.+
T Consensus       396 Lf~~~~R~aa~s~~~~~~w~~~fiv~~-------------------------------~fp~l~~~~g~-~~filF~i~~  443 (485)
T KOG0569|consen  396 LFPQSARSAAQSVATAVNWLSNFIVGF-------------------------------AFPPLQNVIGP-YVFILFVIPL  443 (485)
T ss_pred             hCCccchHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHhcc-hhhHHHHHHH
Confidence            999999999999999999999999998                               88889888887 6888999999


Q ss_pred             HHHHhhhheeccCCCCCCHHHHHHHhccC
Q psy17630        313 IIGTFFVYFVVPETKNKSLQQIQDELSGV  341 (372)
Q Consensus       313 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  341 (372)
                      .+..+..++.+||||+|+..|+.++.+++
T Consensus       444 ~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  444 AIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            99999999999999999999988887766

>KOG0254|consensus

Probab=99.95  E-value=9.1e-26  Score=216.55  Aligned_cols=303  Identities=30%  Similarity=0.481  Sum_probs=236.3

Q ss_pred             eechhhHHhhhhh-------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcC-CCcchHHH
Q psy17630          3 VSGILYTYVIGSL-------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRG-PNYDIHGE   74 (372)
Q Consensus         3 ~~G~~~~~~i~~~-------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~-~~~~~~~~   74 (372)
                      .+|.++++.++..       ||..+.+.   .+.+++ ..+..+++||||+|+.++++.+++++.++++++ .+.+.+.+
T Consensus       188 ~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~---~i~~~~-~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~  263 (513)
T KOG0254|consen  188 TIGILLGYCINYGTSKVYAGWRIPLGLA---LIPAVI-LALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVE  263 (513)
T ss_pred             HHHHHHHHHHhhhhccCCccHHHHHHHH---HHHHHH-HHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHH
Confidence            3556666555543       99999998   555555 455589999999999999999999999999998 44555555


Q ss_pred             HHHHHHHHHHhh---hhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHH
Q psy17630         75 LDELQKELDIQA---QKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFI  151 (372)
Q Consensus        75 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  151 (372)
                      .++.+.....+.   +.+..+.++++ +..+++..+.+.+..+.+.++++...+|.+.+++..|.+... .....+.++.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v  341 (513)
T KOG0254|consen  264 LELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVV  341 (513)
T ss_pred             HHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHH
Confidence            555552211111   11223556665 558888999999999999999999999999999999876544 6777788888


Q ss_pred             HHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeec
Q psy17630        152 QVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMG  231 (372)
Q Consensus       152 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (372)
                      .+++..++.++.||+|||+.++.+...+.++.++++.................+..+...+++...++.+.++++|.+.+
T Consensus       342 ~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~s  421 (513)
T KOG0254|consen  342 NFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVS  421 (513)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhh
Confidence            99999999999999999999999999999999988877655443211123446677777788888889999999999999


Q ss_pred             cCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHH
Q psy17630        232 ELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY  311 (372)
Q Consensus       232 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  311 (372)
                      |.+|.+.|+.+.++....++..+++...                               .+....+..+....|..++++
T Consensus       422 Eifp~~~r~~~~s~~~~~n~~~~~~v~~-------------------------------~~~~~~~~~~~~~~f~~f~~~  470 (513)
T KOG0254|consen  422 EIFPLRLRSKGASLAVAVNWLWNFLISF-------------------------------FFPFITEALGIGGTFGYFGGI  470 (513)
T ss_pred             ccCcHhHHhhhHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHhccccchHHHHHHH
Confidence            9999999999999999999998888776                               666666655444577788888


Q ss_pred             HHHHHh-hhheeccCCCCCCHHHHHHHhccCc
Q psy17630        312 CIIGTF-FVYFVVPETKNKSLQQIQDELSGVK  342 (372)
Q Consensus       312 ~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~  342 (372)
                      +.+... ..++++|||++++.++.++..++..
T Consensus       471 ~~~~~~~fv~~~~pETkg~sleei~~~~~~~~  502 (513)
T KOG0254|consen  471 CLLSLIIFVFFFVPETKGLTLEEINELFEEGI  502 (513)
T ss_pred             HHHHHHHHheEEcccCCCCcHHHHHHHHHcCC
Confidence            777777 7788999999999999888766543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.94  E-value=2.3e-25  Score=213.64  Aligned_cols=271  Identities=20%  Similarity=0.231  Sum_probs=171.7

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHH-HHHHHHHHHcCCCcc-hHHHHHHHHHHHHHhhhhhhhHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRK-DAEKSLLILRGPNYD-IHGELDELQKELDIQAQKKKSLV   93 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~-~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   93 (372)
                      ||++|.+.   + ++.++.++.++++||||||+..++|.+ ++++.+++..+.+.+ ..++.++.++   ++++.+.+++
T Consensus       203 WR~~~~~~---~-ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  275 (502)
T TIGR00887       203 WRILIGFG---A-VPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKAST---AVEVPKASWS  275 (502)
T ss_pred             HHHHHHHH---H-HHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhc---cccchhhhHH
Confidence            99999887   4 455556777889999999999888764 466666666443221 1111111111   1111223577


Q ss_pred             HHHhcc---chhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhh------------HHHHHHHHHHHHHHH
Q psy17630         94 EIYSNK---ATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNY------------GQNIVGFIQVIMTFF  158 (372)
Q Consensus        94 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~  158 (372)
                      ++++++   +.++..+.....++.. ...++....+.|.++++.|++..+.+.            ...+..++.+++.++
T Consensus       276 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~  354 (502)
T TIGR00887       276 DFFTHFFKWRHGKHLLGTAGSWFLL-DIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWV  354 (502)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777643   1222222222222222 222345566788888888876543221            233345566778899


Q ss_pred             HHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcch
Q psy17630        159 SSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV  238 (372)
Q Consensus       159 ~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  238 (372)
                      +++++||+|||++++.+..+.+++.++++......  .       ..............++.+..+..+.+.+|.+|++.
T Consensus       355 ~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~  425 (502)
T TIGR00887       355 TVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL--S-------THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY  425 (502)
T ss_pred             HHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc--c-------hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH
Confidence            99999999999999888877777666554432110  0       01111222222233345566677788899999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHh----------cccchhhHHH
Q psy17630        239 KGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA----------FGTGVAFGTF  308 (372)
Q Consensus       239 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~  308 (372)
                      |+++.++.+..++++++++|.                               +.+.+.+.          .++...+.++
T Consensus       426 R~~~~g~~~~~~~~~~~~~~~-------------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~i~  474 (502)
T TIGR00887       426 RSTAHGISAASGKAGAIIGQF-------------------------------GFLYLAQHGDPTKGYPTGIWMGHVLEIF  474 (502)
T ss_pred             HHHHHHHHHHHhhhHHHHHHH-------------------------------HhhhhhccccccccccccccchHHHHHH
Confidence            999999999999999999998                               77777663          2334577888


Q ss_pred             HHHHHHHHhhhheeccCCCCCCHHHHH
Q psy17630        309 AVYCIIGTFFVYFVVPETKNKSLQQIQ  335 (372)
Q Consensus       309 ~~~~~~~~~~~~~~~~e~~~~~~~~~~  335 (372)
                      +++++++.+.. +++|||+++++||.+
T Consensus       475 ~~~~~~~~i~~-~~lpEt~~~~leei~  500 (502)
T TIGR00887       475 ALFMFLGILFT-LLIPETKGKSLEELS  500 (502)
T ss_pred             HHHHHHHHHHh-eEeccCCCCCHHhhh
Confidence            88877776654 578999999887654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.93  E-value=6.2e-30  Score=242.30  Aligned_cols=294  Identities=32%  Similarity=0.535  Sum_probs=213.0

Q ss_pred             eechhhHHhhhhh---------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHH
Q psy17630          3 VSGILYTYVIGSL---------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHG   73 (372)
Q Consensus         3 ~~G~~~~~~i~~~---------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~   73 (372)
                      .+|.+++.+++..         ||+.+++.   .+++++ .++..+++||||+|+..++|.+||++.++++++.+.+. +
T Consensus       148 ~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~---~~~~l~-~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~-~  222 (451)
T PF00083_consen  148 ALGILLASLIGYIVSYYSDNWGWRILLIFG---AIPSLL-VLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIED-E  222 (451)
T ss_pred             cccccccccccccccccccccccccccccc---cccccc-ccccccccccccceeccccccccccccccccccccccc-c
Confidence            4566666555432         99999998   555554 66777899999999999999999999999976553322 2


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHH
Q psy17630         74 ELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQV  153 (372)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  153 (372)
                      +.++..++.++.++.+.+++++++++..+++.+..+.+....+..+.+...+|.+.+.++.+.+..  ........+...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~  300 (451)
T PF00083_consen  223 EIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNF  300 (451)
T ss_pred             cccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccc
Confidence            222222222222222256788888876667777777777777777777788888888888876655  344555667777


Q ss_pred             HHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccC
Q psy17630        154 IMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL  233 (372)
Q Consensus       154 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  233 (372)
                      ++.+++.++.||+|||+.++.+.++++++.+.++.......+.   +.......+....+....++.+++++.+.+.+|+
T Consensus       301 ~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~El  377 (451)
T PF00083_consen  301 LGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSS---SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAEL  377 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc---ccccccccceeeeecccccccccccccccccccc
Confidence            8888888999999999999999888888777664111111110   0011233344444455566677888888999999


Q ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHH
Q psy17630        234 FTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCI  313 (372)
Q Consensus       234 ~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  313 (372)
                      +|++.|+++.++....+++++++.+.                               +.+.+.+..+....+.+++++++
T Consensus       378 fPt~~R~~~~~~~~~~~~i~~~i~~~-------------------------------~~~~~~~~~~~~~~~~i~~~~~~  426 (451)
T PF00083_consen  378 FPTKVRSTGIGLSYAVGRIGGFIIPF-------------------------------LFPYLFNNLGGWGVFLIFAGVCL  426 (451)
T ss_pred             cccccccccccccccccccccccccc-------------------------------ccccccccccccccchhhHHHHH
Confidence            99999999999999999999998888                               66666666663457888888888


Q ss_pred             HHHhhhheeccCCCCCCHHHHHHH
Q psy17630        314 IGTFFVYFVVPETKNKSLQQIQDE  337 (372)
Q Consensus       314 ~~~~~~~~~~~e~~~~~~~~~~~~  337 (372)
                      +..++.++++|||++++++|.+++
T Consensus       427 i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  427 IAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             HHHhheeEEEeeCCCCCHHHHHhh
Confidence            888888899999999999998765

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.93  E-value=2.8e-23  Score=198.40  Aligned_cols=277  Identities=27%  Similarity=0.449  Sum_probs=188.1

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.|++.   +++.++ .++..+++||+|+|+..+++.+++++..++..+.+. .++..++.++..+++.+.   .+..
T Consensus       193 Wr~~f~~~---~~~~~~-~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~  264 (479)
T PRK10077        193 WRYMFASE---AIPALL-FLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-ATQALQEIKHSLDHGRKT---GGKL  264 (479)
T ss_pred             hHHHHHHH---HHHHHH-HHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-HHHHHHHHHHHHHHhhhh---hhhh
Confidence            99999998   666655 455677899999999888888888777777654432 111122221111110000   0111


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLIS  175 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~  175 (372)
                      +.-  ........+......+..+++...++.|.+.++.|.+.....+.....++..+++.+++++++||+|||+.++.+
T Consensus       265 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~  342 (479)
T PRK10077        265 LMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG  342 (479)
T ss_pred             cch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHh
Confidence            110  111222223333444455566677888999888898877777777888889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHH
Q psy17630        176 DICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF  255 (372)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~  255 (372)
                      .++.+++.+++......  .      ............+..+++..+.+..+.+++|.+|++.|++++++.+..+++++.
T Consensus       343 ~~~~~v~~~~l~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~  414 (479)
T PRK10077        343 ALGMAIGMFSLGTAFYT--Q------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANY  414 (479)
T ss_pred             HHHHHHHHHHHHHHHhc--C------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHH
Confidence            88888877766443211  1      012223333444444555555567778999999999999999999999999998


Q ss_pred             HHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhH------HHHHhcccchhhHHHHHHHHHHHhhhheeccCCCCC
Q psy17630        256 VVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFD------DVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNK  329 (372)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  329 (372)
                      +++.                               ..+      .+.+..+++..|++++++++++.++.+++.||++++
T Consensus       415 ~~~~-------------------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  463 (479)
T PRK10077        415 FVSW-------------------------------TFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK  463 (479)
T ss_pred             HHHH-------------------------------HhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            8877                               433      233567787788888888888887777788999999


Q ss_pred             CHHHHHHHhccC
Q psy17630        330 SLQQIQDELSGV  341 (372)
Q Consensus       330 ~~~~~~~~~~~~  341 (372)
                      +.+|.++..++.
T Consensus       464 ~~~~~~~~~~~~  475 (479)
T PRK10077        464 TLEEMEALWEPE  475 (479)
T ss_pred             CHHHHHHHHhhc
Confidence            888877665543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.92  E-value=1.7e-23  Score=204.82  Aligned_cols=263  Identities=16%  Similarity=0.201  Sum_probs=177.9

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcch----HHHH--HHHHHHHHH-----
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDI----HGEL--DELQKELDI-----   84 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~----~~~~--~~~~~~~~~-----   84 (372)
                      ||++|++.    +++.++.++.++++||||+|+..+++.+++.+.++++++.|...    ....  .+.+.....     
T Consensus       333 WR~l~~i~----~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (742)
T TIGR01299       333 WRVFVIVC----AFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIE  408 (742)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhc
Confidence            99999988    44555577788899999999999999999999999997765321    1110  011110000     


Q ss_pred             -h-hh-----------------hhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-----------
Q psy17630         85 -Q-AQ-----------------KKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-----------  134 (372)
Q Consensus        85 -~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  134 (372)
                       + ..                 ...++.++|+.+ +++.+++..++++...+ +++.+..|+|.+++..           
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~~~~~~~~~~  486 (742)
T TIGR01299       409 IESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQADDYAALTKN  486 (742)
T ss_pred             ccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence             0 00                 001355566544 77777777777766555 4788899999875431           


Q ss_pred             -------------------------------CC-----C---------------C-------------------------
Q psy17630        135 -------------------------------NS-----K---------------I-------------------------  138 (372)
Q Consensus       135 -------------------------------g~-----~---------------~-------------------------  138 (372)
                                                     |+     .               .                         
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~  566 (742)
T TIGR01299       487 FPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKF  566 (742)
T ss_pred             ccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhh
Confidence                                           00     0               0                         


Q ss_pred             ----------------------------CChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHH
Q psy17630        139 ----------------------------ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYF  190 (372)
Q Consensus       139 ----------------------------~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  190 (372)
                                                  ........+..++.+++.+++|+++||+|||++++++.++.+++++++++..
T Consensus       567 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~  646 (742)
T TIGR01299       567 IDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN  646 (742)
T ss_pred             hhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence                                        0012335566788899999999999999999999999888888877665431


Q ss_pred             HHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCccc
Q psy17630        191 YLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVK  270 (372)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (372)
                                  +....++..++.+++.+. ..+..+++++|++|++.|++++|+.+..+.+|++++|.           
T Consensus       647 ------------s~~~ll~~~~l~g~~~~~-~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~-----------  702 (742)
T TIGR01299       647 ------------SESAMIALLCLFGGLSIA-AWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGIL-----------  702 (742)
T ss_pred             ------------cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence                        112223333333333333 33455588999999999999999999999999999998           


Q ss_pred             ccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCCCC
Q psy17630        271 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKS  330 (372)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  330 (372)
                                          +.+.+.+. +...++++.+++.++++++.+ ++|||+++.
T Consensus       703 --------------------i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~  740 (742)
T TIGR01299       703 --------------------IFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQV  740 (742)
T ss_pred             --------------------HHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence                                76666553 344577777777777666655 669998764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253|consensus

Probab=99.91  E-value=7.7e-23  Score=177.10  Aligned_cols=278  Identities=15%  Similarity=0.161  Sum_probs=186.5

Q ss_pred             ceechhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcch----
Q psy17630          2 VVSGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDI----   71 (372)
Q Consensus         2 ~~~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~----   71 (372)
                      |..|......+.+.      |||..+..   + .++..+....+++||||||.+.+|++++|.+.++++.+.|...    
T Consensus       209 waig~v~ea~law~vm~~~gwr~~l~~~---~-~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplg  284 (528)
T KOG0253|consen  209 WAIGQVFEALLAWGVMSNFGWRYLLFTS---S-TPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLG  284 (528)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHH---H-hHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcc
Confidence            56677777777766      99999888   4 6666677888999999999999999999999999987665420    


Q ss_pred             ----------HHHHHHHHHHH-HHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcC-----
Q psy17630         72 ----------HGELDELQKEL-DIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATN-----  135 (372)
Q Consensus        72 ----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----  135 (372)
                                ++|..+..+.+ +..++...+..+++. |..+|..+.....++...+. ++..........+...     
T Consensus       285 vl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~  362 (528)
T KOG0253|consen  285 VLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLY  362 (528)
T ss_pred             eeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccc
Confidence                      11111111111 111233345556654 44777777666666654443 3333333333222110     


Q ss_pred             ---------------CCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        136 ---------------SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       136 ---------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                                     .+...-..-..+..+..++|.++.+++.||+|||+++....++++++.++....   ..      
T Consensus       363 ~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c---~~------  433 (528)
T KOG0253|consen  363 NRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC---KT------  433 (528)
T ss_pred             hhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh---cC------
Confidence                           111111223556788999999999999999999999999999888887775443   11      


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (372)
                         .....+..+..-++...++. +.|+|.+|++|+..|+++.|.+...+.+|+++.|.                     
T Consensus       434 ---rn~~tvllf~arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~---------------------  488 (528)
T KOG0253|consen  434 ---RNAYTVLLFTARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPV---------------------  488 (528)
T ss_pred             ---cchhHHHHHHHHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhH---------------------
Confidence               22233333344444444444 56799999999999999999999999999999997                     


Q ss_pred             cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCCCCH
Q psy17630        281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL  331 (372)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  331 (372)
                                +.  +........+..+++++++++.+...++--||++|.+
T Consensus       489 ----------iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  489 ----------IA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             ----------HH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence                      55  3344444567788888888888877755558988763

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.90  E-value=1.8e-21  Score=185.38  Aligned_cols=292  Identities=30%  Similarity=0.458  Sum_probs=196.4

Q ss_pred             eechhhHHhhh---hh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHH
Q psy17630          3 VSGILYTYVIG---SL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHG   73 (372)
Q Consensus         3 ~~G~~~~~~i~---~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~   73 (372)
                      .+|..+++.++   ..      ||+.|++.   ++..++ .++..+++||+|+++..+++.+++++..++..+.+.+...
T Consensus       173 ~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~---~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (481)
T TIGR00879       173 TFGILVAYGFGSGKVSLNNTLGWRIPLGLQ---LIPAGL-LFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKE  248 (481)
T ss_pred             HHHHHHHHHHHHHhhcCCCCccHHHHHHHH---HHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHH
Confidence            45677777766   22      99999998   444444 5666778999999988877777766666655443332221


Q ss_pred             HHHHHH---HHHH-HhhhhhhhHHHHHhccc-hhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHH
Q psy17630         74 ELDELQ---KELD-IQAQKKKSLVEIYSNKA-TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIV  148 (372)
Q Consensus        74 ~~~~~~---~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (372)
                      ......   .... +.+..+..+.+.++..+ ..+..+....+..+..........++.|.+.++.|++..+.+......
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  328 (481)
T TIGR00879       249 LLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIV  328 (481)
T ss_pred             HHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHH
Confidence            111110   0000 00111112334443221 233444444444444444455677888988888899888888888889


Q ss_pred             HHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhccccccccee
Q psy17630        149 GFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGV  228 (372)
Q Consensus       149 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (372)
                      .++.+++.++.|+++||+|||+.+..+.++.+++.+.+..........  ......+..+....++..+++.+..+..+.
T Consensus       329 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (481)
T TIGR00879       329 GAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG--SSKSSGNVAIVFILLFIAFFAMGWGPVPWV  406 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC--cccchhHHHHHHHHHHHHHHHccccCeehh
Confidence            999999999999999999999999888777777666654321111110  000012333334444445555566667767


Q ss_pred             eeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHH
Q psy17630        229 MMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTF  308 (372)
Q Consensus       229 ~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  308 (372)
                      ++.|.+|++.|++++++.+...+++++++|.                               +.+.+.+..+|+..|++.
T Consensus       407 ~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~-------------------------------~~~~~~~~~~~~~~f~~~  455 (481)
T TIGR00879       407 IVSEIFPLSLRPKGISIAVAANWLANFIVGF-------------------------------LFPTMLESIGVGGVFIFF  455 (481)
T ss_pred             hhhccCChHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHhcCccceehhH
Confidence            8899999999999999999999999999998                               888888888999899999


Q ss_pred             HHHHHHHHhhhheeccCCCCCCH
Q psy17630        309 AVYCIIGTFFVYFVVPETKNKSL  331 (372)
Q Consensus       309 ~~~~~~~~~~~~~~~~e~~~~~~  331 (372)
                      ++++++++++.+++.||+++++.
T Consensus       456 ~~~~~~~~i~~~~~~~~~~~~~~  478 (481)
T TIGR00879       456 GGLNVLGLIFVYFFLPETKGRTL  478 (481)
T ss_pred             HHHHHHHHHHHheecccCCCCCh
Confidence            99988888888778888876654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=99.89  E-value=6.3e-22  Score=190.29  Aligned_cols=273  Identities=18%  Similarity=0.196  Sum_probs=175.3

Q ss_pred             eechhhHHhhhhh---hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcch-HHHHHHH
Q psy17630          3 VSGILYTYVIGSL---YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDI-HGELDEL   78 (372)
Q Consensus         3 ~~G~~~~~~i~~~---Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~   78 (372)
                      .+|.+++++++..   ||+.|++.   +++.++ ..+..+++||||+|+..+++.+++++.+++..+.+... ..+..+.
T Consensus       226 ~~g~~~~~~~~~~~~~wr~~~~~~---~i~~~~-~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  301 (505)
T TIGR00898       226 SLGLVLLPLVAYFIPDWRWLQLAV---SLPTFL-FFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSL  301 (505)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHH---HHHHHH-HHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhh
Confidence            3456666666655   99999999   666555 44555889999999999999999998888776544321 1111111


Q ss_pred             HHHH-HHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Q psy17630         79 QKEL-DIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTF  157 (372)
Q Consensus        79 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  157 (372)
                      +... ..+++++.+++++++++..++..+.....+.....     ..+..+....+.+.+   ........++..+++.+
T Consensus       302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~  373 (505)
T TIGR00898       302 SLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF-----SYYGLVLDLGNLGGN---IYLDLFISGLVELPAKL  373 (505)
T ss_pred             hhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH-----HHHHHhccccccCCC---hHHHHHHHHHHHHHHHH
Confidence            1111 11112234678899988666655544443332211     112222223333322   34455667788889999


Q ss_pred             HHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc
Q psy17630        158 FSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD  237 (372)
Q Consensus       158 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  237 (372)
                      +.+++.||+|||+.+.++.++.+++.+++...   ..       ...+.......+..++.+.. .+..+.+.+|.+|++
T Consensus       374 ~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~  442 (505)
T TIGR00898       374 ITLLLIDRLGRRYTMAASLLLAGVALLLLLFV---PV-------DLYFLRTALAVLGKFGITSA-FQMVYLYTAELYPTV  442 (505)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc---CC-------CchHHHHHHHHHHHHHHHHH-HHHHHHHhcccccHH
Confidence            99999999999999999888877776655433   11       01122233333333333322 234558889999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHh
Q psy17630        238 VKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTF  317 (372)
Q Consensus       238 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  317 (372)
                      .|++++|+.+..+.++++++|.                               +.+ + ...++..++.+++++++++.+
T Consensus       443 ~r~~~~g~~~~~~~ig~~i~p~-------------------------------i~~-~-~~~~~~~~~~~~~~~~~~~~~  489 (505)
T TIGR00898       443 VRNLGVGVCSTMARVGSIISPF-------------------------------LVY-L-GEKWLFLPLVLFGGLALLAGI  489 (505)
T ss_pred             HHhhhHhHHHHHHHHHHHHHhH-------------------------------HHH-H-HHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999999998                               666 3 334555678888877777766


Q ss_pred             hhheeccCCCCCCHH
Q psy17630        318 FVYFVVPETKNKSLQ  332 (372)
Q Consensus       318 ~~~~~~~e~~~~~~~  332 (372)
                      +.+ ++|||++++++
T Consensus       490 ~~~-~lpet~~~~l~  503 (505)
T TIGR00898       490 LTL-FLPETKGVPLP  503 (505)
T ss_pred             HHH-cCcCCCCCCCC
Confidence            654 78999887654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.85  E-value=1.2e-19  Score=173.49  Aligned_cols=244  Identities=15%  Similarity=0.137  Sum_probs=146.2

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.|++.   +++.++ .++++..+||||+|...+++.++..       ++             .  .+++++.+++++
T Consensus       191 WR~~f~i~---~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~-------~~-------------~--~~~~~~~~~~~~  244 (490)
T PRK10642        191 WRIPFFIA---LPLGII-GLYLRHALEETPAFQQHVDKLEQGD-------RE-------------G--LQDGPKVSFKEI  244 (490)
T ss_pred             HHHHHHHH---HHHHHH-HHHHHHcCCCChhHHHHHHhhhhhc-------cc-------------c--ccccccCCHHHH
Confidence            99999998   544443 5566778999999864322211100       00             0  001122345666


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  174 (372)
                      +++  .++........... ....++....+.|.++++ .|++..+.........++.+++.++.|+++||+|||+.+..
T Consensus       245 ~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  321 (490)
T PRK10642        245 ATK--HWRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVIL  321 (490)
T ss_pred             HHH--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            654  23333333322222 223355667788888754 58877777777777888899999999999999999998887


Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (372)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (372)
                      +.++..+..+.+...  ....       +....+....+.+.+.+...+... .+.+|.+|++.|+++.++.+..+..++
T Consensus       322 ~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~g~~~~~~~g~~~-~~~~~~~p~~~Rg~~~g~~~~~~~~~g  391 (490)
T PRK10642        322 GSVALFVLAIPAFIL--INSN-------VIGLIFAGLLMLAVILNCFTGVMA-STLPAMFPTHIRYSALAAAFNISVLVA  391 (490)
T ss_pred             HHHHHHHHHHHHHHH--HhCC-------CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCccchHHHHHHHHHHHHHH
Confidence            765444333221111  1111       112222333333333333333333 667899999999999998777777888


Q ss_pred             HHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhheeccCCCCCC
Q psy17630        255 FVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKNKS  330 (372)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  330 (372)
                      .++|.                               +.+.+.+..+ |+.+++...+.+++..+..+ ++||++++.
T Consensus       392 ~~~p~-------------------------------i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~~~  436 (490)
T PRK10642        392 GLTPT-------------------------------LAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETANRP  436 (490)
T ss_pred             HHHHH-------------------------------HHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccCCC
Confidence            88888                               7777766544 55555555556665555544 569986653

>KOG0252|consensus

Probab=99.84  E-value=3.7e-21  Score=171.56  Aligned_cols=273  Identities=19%  Similarity=0.206  Sum_probs=179.4

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHh-cCCHHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHHhhhhhhhHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLS-KKRRKDAEKSLLILRGPNYD-IHGELDELQKELDIQAQKKKSLV   93 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~-~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   93 (372)
                      ||..|.+.    .++.+..+..++.+|||++|-.. .++.+.+.   ++..++... .+++... ....+..+.....+.
T Consensus       224 WRl~~glg----~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~~~~~~~~~~-~~~~~~~~~~~~~F~  295 (538)
T KOG0252|consen  224 WRIIFGLG----AVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLSVDIEAESTA-ESDVPPPSNSFGLFS  295 (538)
T ss_pred             HHHHHHHH----HHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hccccccccccchhhcc-ccCCCCcccccchHH
Confidence            99999998    55555588899999999998522 22222222   222221111 1111000 000000001111233


Q ss_pred             HHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhh--------H-HHHHHHHHHHHHHHHHHHHh
Q psy17630         94 EIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNY--------G-QNIVGFIQVIMTFFSSLLVD  164 (372)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~-~~~~~~~~~~~~~~~g~l~d  164 (372)
                      ..+..+ +-+.++..+..++..... ++....+...+++..|+.+.+...        . ..+...+.++|..+...++|
T Consensus       296 ~~f~~~-hg~~Llgt~~~WFllDia-fy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id  373 (538)
T KOG0252|consen  296 RLFLRW-HGKHLLGTAGTWFLLDIA-FYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFID  373 (538)
T ss_pred             HHHHHH-HHHHHHHHHHHHHhhhhh-hhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEee
Confidence            444433 445666666666665554 566777888888887775554433        1 11222333446667778899


Q ss_pred             hcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHH
Q psy17630        165 KAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALG  244 (372)
Q Consensus       165 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  244 (372)
                      ++|||+..+.+.+++.+..+.++..+....        +....++...+..++...+.+.....+.+|.||++.|+++.|
T Consensus       374 ~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~--------~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hG  445 (538)
T KOG0252|consen  374 IIGRKYIQLMGFFIMTIFFFVIAGPYNQLE--------NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHG  445 (538)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHcCCccccc--------ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhh
Confidence            999999999999999988887766533211        122234444555566677888788899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHH-----hcccchhhHHHHHHHHHHHhhh
Q psy17630        245 VICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-----AFGTGVAFGTFAVYCIIGTFFV  319 (372)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~  319 (372)
                      +....+.+|+.++..                               .+.+..+     ..+.+..+++++++++++.+..
T Consensus       446 IsAA~GK~GAivg~~-------------------------------~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T  494 (538)
T KOG0252|consen  446 ISAASGKAGAIVGAF-------------------------------GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT  494 (538)
T ss_pred             HHHHhccchHHHHHH-------------------------------HhhHhhhccCCccccchHHHHHHHHHHHHhHhee
Confidence            999999999999998                               7777777     6788889999999999888776


Q ss_pred             heeccCCCCCCHHHHHHHh
Q psy17630        320 YFVVPETKNKSLQQIQDEL  338 (372)
Q Consensus       320 ~~~~~e~~~~~~~~~~~~~  338 (372)
                      + ++|||+++++|+.+.+.
T Consensus       495 ~-l~pEtk~~~leei~~e~  512 (538)
T KOG0252|consen  495 L-LIPETKGKSLEEISNEE  512 (538)
T ss_pred             E-EeecccccCHHHhcChh
Confidence            5 78899999998874433

>KOG0255|consensus

Probab=99.79  E-value=2.9e-17  Score=158.50  Aligned_cols=281  Identities=20%  Similarity=0.201  Sum_probs=182.0

Q ss_pred             chhhHHhhhhh---hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCC---cchHHHHHHH
Q psy17630          5 GILYTYVIGSL---YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPN---YDIHGELDEL   78 (372)
Q Consensus         5 G~~~~~~i~~~---Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~   78 (372)
                      |.+...+.+++   ||+.+++.   .++.++ .++.+++.||||||+..+++.+++.+.+++..+.|   .+.++.....
T Consensus       219 ~~~~~~~~a~~~~~Wr~~~~~~---~~~~~~-~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~  294 (521)
T KOG0255|consen  219 GLMLPAGAAYITRDWRWLFWII---SIPSGL-FLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLE  294 (521)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHH---HHHHHH-HHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHH
Confidence            33333444444   99999999   666655 44457777799999999999999999999987654   2222222221


Q ss_pred             ---HHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHH
Q psy17630         79 ---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIM  155 (372)
Q Consensus        79 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  155 (372)
                         ++......+++..+.++++.++.++..+...+.+.....     ..+-++....+.|   .+........+......
T Consensus       295 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~-----~y~gl~~~~~~lg---~~~~~~~~~~~~~~~p~  366 (521)
T KOG0255|consen  295 LLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSL-----VYYGLSLNVSGLG---GNIYLNFTLSGLVELPA  366 (521)
T ss_pred             HHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhH-----HHHhhhhhhhhcC---chHHHHHHHHHHHHhhH
Confidence               111111112335688899988777777666666643222     1122222223333   34555666666688888


Q ss_pred             HHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCC
Q psy17630        156 TFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT  235 (372)
Q Consensus       156 ~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  235 (372)
                      ....+...|++|||.....+.++..+++++.+.......         .+.......+..++.+.++... +.+.+|++|
T Consensus       367 ~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~p  436 (521)
T KOG0255|consen  367 YFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG---------GWLHWILPLLGKFFIGSAFNLI-FLYSAELIP  436 (521)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccch---------hHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcc
Confidence            888899999999999999999999998888766522111         0123333333334444455545 688999999


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHH
Q psy17630        236 PDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIG  315 (372)
Q Consensus       236 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  315 (372)
                      +..|+.+.+.......++++++|.                               +.... ........+.+++..+.+.
T Consensus       437 t~~r~~~~~~~~~~~~~~~i~ap~-------------------------------~~~~~-~~~~~~~~~~~~~~~~~l~  484 (521)
T KOG0255|consen  437 TVVRNTAVGAISAAARLGSILAPL-------------------------------FPLLL-RQMFPLLGLILFGWLALLL  484 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHH-hhhcccchHHHHHHHHHHH
Confidence            999999999999999999999887                               33222 2222222333356666777


Q ss_pred             HhhhheeccCCCCCCHHHHHHHhc
Q psy17630        316 TFFVYFVVPETKNKSLQQIQDELS  339 (372)
Q Consensus       316 ~~~~~~~~~e~~~~~~~~~~~~~~  339 (372)
                      ..++.+++|||+++.+.+..++.+
T Consensus       485 ~~~~~~~lpet~~~~l~~t~~~~~  508 (521)
T KOG0255|consen  485 GLLSLLLLPETKGKPLPGTLLDAE  508 (521)
T ss_pred             HHHHHhcCcccCCCCCchhHHHHH
Confidence            767767899999998876655544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.76  E-value=1.5e-17  Score=147.90  Aligned_cols=247  Identities=14%  Similarity=0.162  Sum_probs=150.3

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||..|++.   +++++++.++.++.++|+|+-.- -.+.||       .+++..+       .+  .++++.+..+.+++
T Consensus       184 w~~~f~~p---giiaiival~~~~~~rd~Pqs~G-LP~ie~-------~~~d~~e-------~~--~~~~~~~~ls~~~i  243 (448)
T COG2271         184 WRAAFYFP---GIIAIIVALILLFLLRDRPQSEG-LPPIEE-------YRGDPLE-------IY--EEEKENEGLTAWQI  243 (448)
T ss_pred             hhHHHHHH---HHHHHHHHHHHHHHhCCCccccC-CCCHHH-------hhcCchh-------hh--hhhccCCCccHHHH
Confidence            99999999   99999999999999999996210 001111       1111000       00  00111111233443


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc--CCcchh
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPLL  172 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~  172 (372)
                      +.+.-...+.++.+.+........-+.+..|.|.++.+. |++..++++..+.+-.++++|++++||++||+  |||...
T Consensus       244 ~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~  323 (448)
T COG2271         244 FVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM  323 (448)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence            322222222333333333333333678888999888776 99999999999999999999999999999996  677655


Q ss_pred             hHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHH
Q psy17630        173 LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL  252 (372)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  252 (372)
                      .+.+.+....+++.   ++....      .+.++..+++.+.++. -.+..-+.-....|+.|.+.-|++.|+...++.+
T Consensus       324 ~~i~~~~i~~~~~~---~w~~~~------~~~~l~~~~l~~iGf~-IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl  393 (448)
T COG2271         324 ALIFMLLITASLVL---YWLAPN------GSYLLDAILLFIIGFL-IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYL  393 (448)
T ss_pred             HHHHHHHHHHHHHH---HHcCCC------ccHHHHHHHHHHHHHH-HhhHHHHHHHHHhccccHhhccchhchhhhHHHH
Confidence            43332222222221   222111      1223333333333222 2222223335678999999999999999999999


Q ss_pred             -HHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheec
Q psy17630        253 -IEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV  323 (372)
Q Consensus       253 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  323 (372)
                       |...+..                               ..+.+.+.+||...|.++.+.++++.++.....
T Consensus       394 ~Ga~~a~~-------------------------------~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         394 IGAALAGL-------------------------------PLGYIADTWGWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             hhHHhcCC-------------------------------cceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence             5565555                               666666778999888888777777766554333

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.73  E-value=8.4e-17  Score=151.67  Aligned_cols=165  Identities=13%  Similarity=0.091  Sum_probs=106.9

Q ss_pred             hHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc--CCcchh-hHhhHHHHHHHHHHHHHHHHhhc
Q psy17630        120 INVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPLL-LISDICMAICIGALGYYFYLLKL  195 (372)
Q Consensus       120 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~-~~~~~~~~~~~~~~~~~~~~~~~  195 (372)
                      ...+..+.|.+++ +.|++..+.+.......++..++.++.|+++||+  ++|+.. ....+...+....+...   .. 
T Consensus       259 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~-  334 (434)
T PRK11663        259 RAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM---PF-  334 (434)
T ss_pred             HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc---cc-
Confidence            3455667888875 4598988989999999999999999999999999  333332 22111111111111111   00 


Q ss_pred             cccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630        196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG  275 (372)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (372)
                      .      ............+.+ ..+..........|.+|++.|++++|+.+....++++++|.                
T Consensus       335 ~------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~----------------  391 (434)
T PRK11663        335 A------SYVMQAACFFTIGFF-VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGY----------------  391 (434)
T ss_pred             c------cHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcc----------------
Confidence            0      011111111222111 11111122245689999999999999999999999999999                


Q ss_pred             hhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        276 VICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                                     ..+.+.+..||+..|.+.++++++..+..+...+++
T Consensus       392 ---------------~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  427 (434)
T PRK11663        392 ---------------PLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQ  427 (434)
T ss_pred             ---------------cHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                           889999999998888888888877776655444433

>PRK09952 shikimate transporter; Provisional

Probab=99.73  E-value=4e-16  Score=147.17  Aligned_cols=167  Identities=12%  Similarity=0.023  Sum_probs=103.4

Q ss_pred             hHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      .+....+.|.+.+ +.|++...........++..+++.++.|+++||+|||+.+..+.++..++.+.+...  ....+  
T Consensus       266 ~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~--  341 (438)
T PRK09952        266 MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMA--LEAQS--  341 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHcCC--
Confidence            3445566676654 457666544445556677778889999999999999999887766555443332221  11111  


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHH-HHHHHHHHhhccccCCcccccchhhh
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGS-LIEFVVVKTVRHRFTPDVKGLALGVI  277 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (372)
                          ..+..+....+.+++.+.. .+..+++++|.+|++.|+++.++.+..+. +++.++|.                  
T Consensus       342 ----~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~------------------  398 (438)
T PRK09952        342 ----IFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPF------------------  398 (438)
T ss_pred             ----hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHH------------------
Confidence                1122222222222333322 23345788999999999999999776654 78888888                  


Q ss_pred             hhhcchhhhhhhhhhHHHHHhc--ccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        278 CILGSLIEFVVVKTFDDVERAF--GTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                   +.+.+.+..  +|...+...+++++++.+..+ ..+|++
T Consensus       399 -------------i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~~~  436 (438)
T PRK09952        399 -------------IAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKDNQ  436 (438)
T ss_pred             -------------HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hccccc
Confidence                         777777754  365566666666666655544 456543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.72  E-value=8.5e-16  Score=144.59  Aligned_cols=155  Identities=16%  Similarity=0.122  Sum_probs=100.8

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP  170 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  170 (372)
                      +++++++++..+..... ....+. ..........+.|.+.++.|++..+.+.......++.+++.++.|++.||+|||+
T Consensus       220 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  297 (426)
T PRK12307        220 SMKGLFNRAQFPLTLCV-FIVLFS-IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK  297 (426)
T ss_pred             HHHHHHhhchHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            46677777644332222 222211 1112233456778888888888888888888889999999999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhh-cccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630        171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVF-SVGFGPIPGVMMGELFTPDVKGLALGVICIL  249 (372)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  249 (372)
                      .+..+.++..+..+.....   ...        ... ......++.+. ..+..+....++.|.+|++.|++++|+.+..
T Consensus       298 ~~~~~~~~~~~~~~~~~~~---~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  365 (426)
T PRK12307        298 TFSIGLLMSFLFIFPLFRI---PQD--------NYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNL  365 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHH---ccc--------cHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHH
Confidence            8887776665544333211   110        111 12222222221 2233333446778999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17630        250 GSLIEFVVVK  259 (372)
Q Consensus       250 ~~~~~~~~~~  259 (372)
                      ..+++.++|.
T Consensus       366 ~~~~~~~gp~  375 (426)
T PRK12307        366 AATSGTFNSM  375 (426)
T ss_pred             HhHHHHHHHH
Confidence            9999999998

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.72  E-value=8.7e-16  Score=145.53  Aligned_cols=241  Identities=13%  Similarity=0.075  Sum_probs=136.0

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhH-HH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSL-VE   94 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   94 (372)
                      ||+.|++.   +++.++..++..+++||+|+....+ +.++.++      +.+    ++.   ++..+++.+.+..+ ..
T Consensus       186 w~~~f~i~---~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~------~~~----~~~---~~~~~~~~~~~~~~~~~  248 (452)
T PRK11273        186 WHAALYMP---AFAAILVALFAFAMMRDTPQSCGLP-PIEEYKN------DYP----DDY---NEKHEQELTAKQIFMQY  248 (452)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHccCCHhhcCCC-Chhhhhh------ccc----ccc---ccccCCCccHHHHHHHH
Confidence            99999998   7777776777788889988642111 1111000      000    000   00000000001111 22


Q ss_pred             HHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc--CCcch
Q psy17630         95 IYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPL  171 (372)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~  171 (372)
                      +++++..|...+...+..     ...+....+.|.++++ .|++..+.+....+..++.+++.+++|+++||+  +||..
T Consensus       249 ~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~  323 (452)
T PRK11273        249 VLPNKLLWYIAIANVFVY-----LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA  323 (452)
T ss_pred             HHcChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch
Confidence            445543332222222211     1234556788888876 488888888888888899999999999999999  45543


Q ss_pred             hhH-hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHH
Q psy17630        172 LLI-SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG  250 (372)
Q Consensus       172 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  250 (372)
                      ..+ ...+..++.+.+    ......      +.+.........+.... +.......+..|.+|++.||+++|+.+...
T Consensus       324 ~~~~~~~l~~~~~~~~----~~~~~~------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  392 (452)
T PRK11273        324 TGVFFMTLVTIATIVY----WLNPAG------NPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFG  392 (452)
T ss_pred             HHHHHHHHHHHHHHHH----HHhccc------ChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHH
Confidence            222 222222222111    111110      11222222222222111 111122245679999999999999999888


Q ss_pred             HHHHHH-HHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        251 SLIEFV-VVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       251 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                      .+++.+ +|.                               +.+.+.+..||+..|++.+++++++++...
T Consensus       393 ~~g~~~~g~~-------------------------------v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        393 YLGGSVAASA-------------------------------IVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHhhhh-------------------------------hHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            888765 677                               888888999998899888888777766655

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.71  E-value=1.3e-15  Score=146.32  Aligned_cols=148  Identities=14%  Similarity=0.058  Sum_probs=104.7

Q ss_pred             HHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630        123 VIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (372)
Q Consensus       123 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (372)
                      ...+.|.+++ +.|++..+.+...+...++.+++.++.|+++||+|||+.+..+.++..+..+.....   .. .     
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~-~-----  364 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI---GG-A-----  364 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc---cc-c-----
Confidence            4567788875 678999999999999999999999999999999999998887765555443332111   00 0     


Q ss_pred             cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG  281 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (372)
                       ..+......... .+.+.+..+....++.|.+|++.|++++++.+....+++.++|.                      
T Consensus       365 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~----------------------  420 (496)
T PRK03893        365 -NVWVLGLLLFFQ-QMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPI----------------------  420 (496)
T ss_pred             -HHHHHHHHHHHH-HHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHH----------------------
Confidence             111111111111 12222333344467789999999999999999999999999998                      


Q ss_pred             chhhhhhhhhhHHHHHhcccchhhHHHHHHH
Q psy17630        282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYC  312 (372)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  312 (372)
                               +.+.+.+..|++..+...+..+
T Consensus       421 ---------l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        421 ---------LGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             ---------HHHHHhccCChHHHHHHHHHHH
Confidence                     8888888888877665555443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.71  E-value=8.1e-16  Score=143.78  Aligned_cols=127  Identities=12%  Similarity=0.080  Sum_probs=93.1

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      .+....+.|.+.++.|++..+.+.......++.+++.++.|+++||+|||+.+..+.+...++.+.+...     .    
T Consensus       236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~----  306 (406)
T PRK11551        236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-----P----  306 (406)
T ss_pred             HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-----C----
Confidence            3455667888888889999999999999999999999999999999999998877655555444433221     0    


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                         +.+...+.....+.+.. +..+..+++..|.+|++.|+++.++.+....++++++|.
T Consensus       307 ---~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~  362 (406)
T PRK11551        307 ---SFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPL  362 (406)
T ss_pred             ---cHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhh
Confidence               12222222233333222 233444578899999999999999999999999999998

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.70  E-value=5.9e-16  Score=143.55  Aligned_cols=260  Identities=17%  Similarity=0.175  Sum_probs=149.8

Q ss_pred             eechhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHH
Q psy17630          3 VSGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELD   76 (372)
Q Consensus         3 ~~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~   76 (372)
                      .+|.++++.++..      ||+.|++.   +++.++..++..+.+||+|+... +.+.++.....++...+         
T Consensus       128 ~~g~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------  194 (399)
T TIGR00893       128 GLGGIIGGPLVGWILIHFSWQWAFIIE---GVLGIIWGVLWLKFIPDPPQKAK-WLTEEEKYIVVGGLLAE---------  194 (399)
T ss_pred             hHHHHHHHHHHHHHHHhCCchHHHHHH---HHHHHHHHHHhhheecCCCCccc-cCCHHHHhhcchhhccc---------
Confidence            3455666555543      99999998   77777766666777788764110 00111100000000000         


Q ss_pred             HHHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHH
Q psy17630         77 ELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIM  155 (372)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~  155 (372)
                        .+..+++++.+.+.++.+++++.+...+..     ............+.|.+.++ .|.+..+.+.......++.+++
T Consensus       195 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (399)
T TIGR00893       195 --QQGKGPSTPKKYQIKELLKDRRVWGLALGQ-----FLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIG  267 (399)
T ss_pred             --cccccccCCCccchHHHhcCHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHH
Confidence              000011112233466777765333222221     22222244556677777655 5888888899999999999999


Q ss_pred             HHHHHHHHhhcCCcchhhH-hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCC
Q psy17630        156 TFFSSLLVDKAGRRPLLLI-SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF  234 (372)
Q Consensus       156 ~~~~g~l~dr~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  234 (372)
                      .++.|+++||++||+.... ......++.+............     ...+..+. ..... +.+.+..+..+.+..|.+
T Consensus       268 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  340 (399)
T TIGR00893       268 MILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYV-----NIPYAALA-LVALG-FFGLGAGAIGWALISDNA  340 (399)
T ss_pred             HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHH-HHHHH-HhchhhhhHHHHHHHhhc
Confidence            9999999999999962111 1111111111111111111100     01122222 22222 222234566668899999


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHH
Q psy17630        235 TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCI  313 (372)
Q Consensus       235 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~  313 (372)
                      |++.|+++.++.+....+++.++|.                               +.+.+.+..| ++..+.+.+++.+
T Consensus       341 ~~~~~g~~~~~~~~~~~~g~~~~~~-------------------------------i~g~l~~~~g~~~~~~~~~~~~~~  389 (399)
T TIGR00893       341 PGNIAGLTGGLINSLGNLGGIVGPI-------------------------------VIGAIAATTGSFAGALMVVAALAL  389 (399)
T ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhH-------------------------------HhhhhccCCCchhHHHHHHHHHHH
Confidence            9999999999999999999999998                               8888888888 8778877777776


Q ss_pred             HHHhhhh
Q psy17630        314 IGTFFVY  320 (372)
Q Consensus       314 ~~~~~~~  320 (372)
                      ++.+..+
T Consensus       390 ~~~~~~~  396 (399)
T TIGR00893       390 IGALSYL  396 (399)
T ss_pred             HHHHHHH
Confidence            6665543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.70  E-value=7e-16  Score=146.79  Aligned_cols=159  Identities=13%  Similarity=0.002  Sum_probs=107.1

Q ss_pred             hHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      ......+.|.++++ .|++..+.++......++.+++.+++|+++||+|||+.+........++...+..   ....   
T Consensus       274 ~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~---~~~~---  347 (467)
T PRK09556        274 RIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY---QHAT---  347 (467)
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH---HhcC---
Confidence            44567788887755 6999888889988899999999999999999999998776554433332211111   1111   


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHH-HHHHHHHhhccccCCcccccchhhh
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL-IEFVVVKTVRHRFTPDVKGLALGVI  277 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  277 (372)
                          +.+...+..+..+... .+..........|.+|++.||++.|+.+..+++ +++++|.                  
T Consensus       348 ----~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~------------------  404 (467)
T PRK09556        348 ----SEYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKV------------------  404 (467)
T ss_pred             ----cHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhh------------------
Confidence                1222223333332221 121112124557999999999999999999987 6688888                  


Q ss_pred             hhhcchhhhhhhhhhHHHHH------------hcccchhhHHHHHHHHHHHhhhh
Q psy17630        278 CILGSLIEFVVVKTFDDVER------------AFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                                   +.+.+.+            ..+|+..|.+.+++.+++.+...
T Consensus       405 -------------~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        405 -------------GLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             -------------hHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence                         7787777            56788888888777777665544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.70  E-value=1e-15  Score=141.11  Aligned_cols=221  Identities=13%  Similarity=0.039  Sum_probs=142.0

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.|++.   ++++++..+..+++++|.|+.   +.+             ++.+.              ++++.+.++.
T Consensus       155 ~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~--------------~~~~~~~~~~  201 (377)
T TIGR00890       155 VPAAFIYM---GIIFLLVIVLGAFLIGYPPGQ---LIK-------------TNIEV--------------SVKDYTVWEM  201 (377)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHheecCchh---ccc-------------cCccc--------------chhhhhHHHH
Confidence            99999999   777777666666677665431   000             00000              0011124556


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLIS  175 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~  175 (372)
                      ++++..+.... .......    .......+.+.+.++.|.+..+.+.......++.+++.++.|+++||+|||+.+..+
T Consensus       202 ~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~  276 (377)
T TIGR00890       202 LRTPQFWVLYL-SFFLNAV----SGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIV  276 (377)
T ss_pred             HcCccHHHHHH-HHHHHhH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            66654332222 1111111    122233344556677787777788888899999999999999999999999998888


Q ss_pred             hHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHH
Q psy17630        176 DICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF  255 (372)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~  255 (372)
                      .++..++.+.+...   ..       ...........+.+.+.+... +....++.|.+|+++|+++.++.+....+++.
T Consensus       277 ~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~  345 (377)
T TIGR00890       277 FGISAVGMAAMLFI---PM-------LNDVLFLATVALVFFTWGGTI-SLFPSLVSDIFGPANSAANYGFLYTAKAVAGI  345 (377)
T ss_pred             HHHHHHHHHHHHHc---cc-------chhHHHHHHHHHHHHHhccch-hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHH
Confidence            77777766554332   10       011122222333333333322 23336788999999999999999999999999


Q ss_pred             HHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHH
Q psy17630        256 VVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT  316 (372)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  316 (372)
                      ++|.                               +.+.+.+..||+..+.+.+++++++.
T Consensus       346 ~~~~-------------------------------~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       346 FGGL-------------------------------IASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHH-------------------------------HHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            9999                               88888888999888887777666544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.70  E-value=9.8e-16  Score=143.76  Aligned_cols=169  Identities=11%  Similarity=0.057  Sum_probs=122.7

Q ss_pred             HHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        122 VVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      ....+.|.+.++ .|.+..+.++......++.+++.++.+++.||.++++.+..+..+.+++.+.+...     +     
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~-----  310 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-----P-----  310 (417)
T ss_pred             hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-----c-----
Confidence            344567777777 68888889999999999999999999999999887777777766665555443222     0     


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (372)
                        +.+.......+.+.+.+. ..+...+++.|..|++.|++++++.+....++..+++.                     
T Consensus       311 --~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~---------------------  366 (417)
T PRK10489        311 --MWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAA---------------------  366 (417)
T ss_pred             --hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHH---------------------
Confidence              122223333333333322 22344467789999999999999999999999999999                     


Q ss_pred             cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCCCCHHHH
Q psy17630        281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQI  334 (372)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  334 (372)
                                +.+.+.+..|.+..+.+.+++.++..++.+...|++++++.+|.
T Consensus       367 ----------l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (417)
T PRK10489        367 ----------LLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP  410 (417)
T ss_pred             ----------HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence                      89999998898888887777777766666667788776655443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.68  E-value=2.2e-15  Score=138.39  Aligned_cols=228  Identities=14%  Similarity=0.143  Sum_probs=133.8

Q ss_pred             echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (372)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   77 (372)
                      +|..+++.++..      ||+.|++.   ++++++..++.++++||+|++.   ++.              .+.    ++
T Consensus       125 lG~~l~~~~~~~l~~~~gWr~~f~~~---~~l~~~~~~~~~~~lp~~p~~~---~~~--------------~~~----~~  180 (368)
T TIGR00903       125 LGIIFALAAGLKIYTAGGLQLLIIPI---AAVAAAGIILVLAALPALPFQA---AEG--------------FGF----KD  180 (368)
T ss_pred             HHHHHHHHHHHHHHHccchHHHHHHH---HHHHHHHHHHHHHHcCCCCCCC---CCC--------------cch----HH
Confidence            455555555444      99999998   7888887778888999998642   100              000    00


Q ss_pred             HHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Q psy17630         78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTF  157 (372)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  157 (372)
                                ...+++++++++..+...+.     .++.....+.+..|+|.++++.|++.. .+.......+.+.   +
T Consensus       181 ----------~~~~~~~ll~~~~~~~~~~~-----~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~---~  241 (368)
T TIGR00903       181 ----------AVKEFGALAGRKDLWIIGAI-----LGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGL---I  241 (368)
T ss_pred             ----------HHHHHHHHHcChhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHH---H
Confidence                      00135678887644333222     222233356677899999988887653 4444444444444   4


Q ss_pred             HHHHHHhhcCCc---chhhH-hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccC
Q psy17630        158 FSSLLVDKAGRR---PLLLI-SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL  233 (372)
Q Consensus       158 ~~g~l~dr~grr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  233 (372)
                      ..++++||..||   +.... ...+.++........     .       ..+..+....+.+++ .....+..+++.+|.
T Consensus       242 g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~-----~-------~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  308 (368)
T TIGR00903       242 GVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE-----L-------NRLALFAFIGIAGLL-MLPAYAIIMDWIGKF  308 (368)
T ss_pred             HHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc-----c-------ccHHHHHHHHHHHHh-hhhhHHHHHHHHHHh
Confidence            457888887654   33222 222222222221111     0       122222233323222 222333455788999


Q ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHH
Q psy17630        234 FTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCI  313 (372)
Q Consensus       234 ~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  313 (372)
                      +|++.|+++.|+.+..+++++..+|.                               ..+.+..  +....|.++++..+
T Consensus       309 ~p~~~rgt~~G~~~~~g~~~~~~~~~-------------------------------~~~~~~~--~~~~~f~~~~~~~~  355 (368)
T TIGR00903       309 CDKELHGKAAGAIGFTSRAISVALAL-------------------------------AAMLFIS--SAEAYFTFLAILIT  355 (368)
T ss_pred             cchhhcCcccchhhHHHHHHHHHHHH-------------------------------HHHHHhc--CHHHHHHHHHHHHH
Confidence            99999999999999999999999888                               5555542  54557777777777


Q ss_pred             HHHhhhh
Q psy17630        314 IGTFFVY  320 (372)
Q Consensus       314 ~~~~~~~  320 (372)
                      ++.+...
T Consensus       356 i~~~~~~  362 (368)
T TIGR00903       356 IAFAIAL  362 (368)
T ss_pred             HHHHHHH
Confidence            7766654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.68  E-value=9.3e-16  Score=144.79  Aligned_cols=251  Identities=13%  Similarity=0.079  Sum_probs=143.2

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhh-HHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKS-LVE   94 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   94 (372)
                      ||+.|++.   +++.++..++.++++||+|+....+ +.++       .+++..+  +..++    .+.+.+.+.. ...
T Consensus       184 w~~~f~~~---~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~--~~~~~----~~~~~~~~~~~~~~  246 (438)
T TIGR00712       184 WHAALYFP---AICAIIVALFAFAMMRDTPQSCGLP-PIEE-------YRNDYPD--DYNEK----AEQELTAKEIFMQY  246 (438)
T ss_pred             hHHHHHHH---HHHHHHHHHHHHHhccCCHHhcCCC-Cchh-------ccccccc--ccccc----cccccchHHHHHHH
Confidence            99999998   7777776667778889988632100 0000       0000000  00000    0000000111 123


Q ss_pred             HHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhh
Q psy17630         95 IYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL  173 (372)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  173 (372)
                      +++++..+...+...+.     ....+....+.|.++++. |++..+.++...+..+..+++.+++|+++||+++++...
T Consensus       247 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  321 (438)
T TIGR00712       247 VLPNKLLWYIAIANVFV-----YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA  321 (438)
T ss_pred             HccCchHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH
Confidence            55665333332222221     122345667888888764 888888899889999999999999999999997544333


Q ss_pred             HhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHH
Q psy17630        174 ISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI  253 (372)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~  253 (372)
                      .+.....+..+.... .......      +.+.........+.+. .+..........|.+|++.|++++|+.+..+.++
T Consensus       322 ~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  393 (438)
T TIGR00712       322 TGVFFMTLVTIAVIV-YWMNPAG------NPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG  393 (438)
T ss_pred             HHHHHHHHHHHHHHH-HHhcCCC------chHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhh
Confidence            333222221111111 1111110      1122222222222211 1111111235679999999999999999888877


Q ss_pred             H-HHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        254 E-FVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       254 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                      + +++|.                               +.+.+.+..|+...+.+.+++++++.+..++++||.|
T Consensus       394 g~~~gp~-------------------------------l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       394 GSVAASA-------------------------------IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             hhhhcch-------------------------------hHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            5 57888                               8888888889988888888888888777777777754

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.67  E-value=7.5e-15  Score=138.36  Aligned_cols=193  Identities=15%  Similarity=0.160  Sum_probs=110.9

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.|++.   +++.++ .+..+..+||+|++..      +  +                          .+++.+++++
T Consensus       197 Wr~~F~i~---~~~~ll-~~~~~~~~~e~~~~~~------~--~--------------------------~~~~~~~~~l  238 (432)
T PRK10406        197 WRIPFALG---AVLAVV-ALWLRRQLDETSQQET------R--A--------------------------LKEAGSLKGL  238 (432)
T ss_pred             hHHHHHHH---HHHHHH-HHHHHhcCCCCchHHH------h--h--------------------------hcccccHHHH
Confidence            99999998   565554 4556677899875310      0  0                          0011245667


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  174 (372)
                      +++++.+.   ... .........++....|.|.++++ .|++..+.+.......+...++.++.|+++||+|||+.+..
T Consensus       239 ~~~~~~~~---~~~-~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~  314 (432)
T PRK10406        239 WRNRRAFI---MVL-GFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLC  314 (432)
T ss_pred             HhhHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            76542221   111 11111122245566778887755 58887777777777788888889999999999999998776


Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHH-
Q psy17630        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI-  253 (372)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~-  253 (372)
                      +.++.++....+...  .....      .....+....+.....+. ..+..+.+.+|.+|++.|++++|+.+..++.. 
T Consensus       315 ~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~  385 (432)
T PRK10406        315 FGSLAALFTVPILSA--LQNVS------SPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALF  385 (432)
T ss_pred             HHHHHHHHHHHHHHH--HHcCC------cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHH
Confidence            655443332221111  11110      112111111111112211 12234477899999999999999998876652 


Q ss_pred             HHHHHH
Q psy17630        254 EFVVVK  259 (372)
Q Consensus       254 ~~~~~~  259 (372)
                      +...|.
T Consensus       386 g~~~p~  391 (432)
T PRK10406        386 GGSAEY  391 (432)
T ss_pred             HhHHHH
Confidence            334554

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.66  E-value=1.6e-14  Score=134.78  Aligned_cols=141  Identities=16%  Similarity=0.045  Sum_probs=98.5

Q ss_pred             HHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        122 VVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       122 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      ....+.|.+.. +.|++..+.+.......++.+++.++.|+++||+|||+.+..+..+..+..+.....    ..     
T Consensus       256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~-----  326 (405)
T TIGR00891       256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI----GA-----  326 (405)
T ss_pred             hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh----CC-----
Confidence            33445566554 468888889999999999999999999999999999998887766543322221111    11     


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (372)
                        +.+.......+.+.... +..+....++.|.+|++.|++++|+.+....+++.++|.                     
T Consensus       327 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~---------------------  382 (405)
T TIGR00891       327 --NVAVLGLGLFFQQMLVQ-GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPI---------------------  382 (405)
T ss_pred             --chHHHHHHHHHHHHHHc-cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHH---------------------
Confidence              12222222233333322 223344477899999999999999999999999999999                     


Q ss_pred             cchhhhhhhhhhHHHHHhcc-cchhh
Q psy17630        281 GSLIEFVVVKTFDDVERAFG-TGVAF  305 (372)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~g-~~~~~  305 (372)
                                +.+.+.+..| |+..+
T Consensus       383 ----------~~g~l~~~~g~~~~~~  398 (405)
T TIGR00891       383 ----------IGALLAQRLDEYGTAL  398 (405)
T ss_pred             ----------HHHHHHHhccccchhH
Confidence                      8999999888 64433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.66  E-value=7.8e-15  Score=135.52  Aligned_cols=229  Identities=9%  Similarity=0.039  Sum_probs=140.7

Q ss_pred             echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (372)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   77 (372)
                      +|..+++.++..      ||+.|++.   +++.++..++.++++||+|+...     ++          +          
T Consensus       136 ~g~~ig~~~~~~l~~~~~~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~----------~----------  187 (375)
T TIGR00899       136 LAWVIGPPLAFWLALGFGFTVMFLTA---ALAFVLCGVLVWLFLPSYPRGAP-----GA----------L----------  187 (375)
T ss_pred             HHHHHhhhHHHHHHHhcccHHHHHHH---HHHHHHHHHHHHHhCCCcccCcc-----cc----------c----------
Confidence            445555544433      99999999   77766666666677899774210     00          0          


Q ss_pred             HHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHH
Q psy17630         78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMT  156 (372)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~  156 (372)
                                ++.+.++.++++..+......+.....     ......+.|.+. ++.|.+..+.+...........++.
T Consensus       188 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  252 (375)
T TIGR00899       188 ----------TRLEVRGLLASRDTRLLFVACTLMWGC-----NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFM  252 (375)
T ss_pred             ----------CcchhhhhhcCcchHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence                      000112244444333222222211111     222334455554 4568888888887777777788889


Q ss_pred             HHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCc
Q psy17630        157 FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP  236 (372)
Q Consensus       157 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  236 (372)
                      ++.|++.||+|||+.+..+.++..+........    .        +.+.......+.+.+.+.. .+....+..|..|+
T Consensus       253 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~  319 (375)
T TIGR00899       253 LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD----N--------SLWALLMLQLLNAIFIGIL-AGIGMLYFQDLMPG  319 (375)
T ss_pred             HhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH----H--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcc
Confidence            999999999999998877765544433322111    1        1222333333333333322 23344667888876


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHH
Q psy17630        237 DVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT  316 (372)
Q Consensus       237 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  316 (372)
                      + |++++++.+...+++..++|.                               +.+.+.+..|++..+++.+++++++.
T Consensus       320 ~-~~~~~~~~~~~~~~g~~~g~~-------------------------------~~g~~~~~~g~~~~~~~~~~~~~~~~  367 (375)
T TIGR00899       320 R-AGAATTLYTNTGRVGWIIAGS-------------------------------VGGILAERWSYHAVYWFAIVMLIVAL  367 (375)
T ss_pred             h-hhHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHhccchhHHHHHHHHHHHHH
Confidence            4 679999999999999999998                               88888888899888888887777776


Q ss_pred             hhhh
Q psy17630        317 FFVY  320 (372)
Q Consensus       317 ~~~~  320 (372)
                      +...
T Consensus       368 ~~~~  371 (375)
T TIGR00899       368 FCLL  371 (375)
T ss_pred             HHHh
Confidence            6543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.66  E-value=5.8e-15  Score=138.29  Aligned_cols=193  Identities=12%  Similarity=0.091  Sum_probs=128.3

Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCC--------CChhhHHHHHHHHHHHHHHHHHHHH
Q psy17630         92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKI--------ISPNYGQNIVGFIQVIMTFFSSLLV  163 (372)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~  163 (372)
                      .++++|+++++...+..++....     ......+.+.+.++.|.+.        ...+...+...+..+++.++.|+++
T Consensus       201 ~~~~~k~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~  275 (418)
T TIGR00889       201 AFILFKNKRMAIFFFFSMLLGAP-----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFL  275 (418)
T ss_pred             HHHHhcCCCeeeHHHHHHHHHhH-----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777554433333332221     1223345566666665443        4557888888889999999999999


Q ss_pred             hhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHH
Q psy17630        164 DKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLAL  243 (372)
Q Consensus       164 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  243 (372)
                      ||+|||+++..+.++.+++...+...    ...    ....+..++...+.+.+.+... +....++.|.+|++.|++++
T Consensus       276 dr~g~r~~l~~~~~~~~v~~~l~~~~----~~~----~~~~~~l~l~~~l~g~~~~~~~-~~~~~~i~~~~p~~~~g~~~  346 (418)
T TIGR00889       276 KRFGIKKVMLLSLVAWALRFGFFAYG----DPE----YFGYALLFLSMIVYGCAFDFFN-ISGSVFVEKEVPVHIRASAQ  346 (418)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHc----Ccc----hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHH
Confidence            99999999999988777765544331    000    0001222333344444433322 33336789999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhc------ccchhhHHHHHHHHHHH
Q psy17630        244 GVIC-ILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF------GTGVAFGTFAVYCIIGT  316 (372)
Q Consensus       244 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~  316 (372)
                      ++.+ ....++..++|.                               +.+.+.+..      ||+..|.+.+++.++..
T Consensus       347 g~~~~~~~~lg~~iGp~-------------------------------l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~  395 (418)
T TIGR00889       347 GLFTLMCNGFGSLLGYI-------------------------------LSGVMVEKMFAYGTFDWQTMWLFFAGYIAILA  395 (418)
T ss_pred             HHHHHHHHhhHHHHHHH-------------------------------HHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence            9997 567788999998                               888887773      58888888888888888


Q ss_pred             hhhheeccCCCCC
Q psy17630        317 FFVYFVVPETKNK  329 (372)
Q Consensus       317 ~~~~~~~~e~~~~  329 (372)
                      ++.++++||+++.
T Consensus       396 ~l~~~~~~~~~~~  408 (418)
T TIGR00889       396 VLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHHHhCCcccC
Confidence            8877788877543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.65  E-value=3.6e-15  Score=140.04  Aligned_cols=147  Identities=12%  Similarity=0.102  Sum_probs=103.8

Q ss_pred             CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHH
Q psy17630        135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY  214 (372)
Q Consensus       135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (372)
                      +.+..+.+.......+..+++.+++|+++||+|||+.+..+.++.++..+...+.            .+.+..+....+.
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~------------~~~~~~~~~~~l~  325 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA------------TGPLEVSILKLLH  325 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHH
Confidence            4455566788888888899999999999999999999888877777665554332            1123333333333


Q ss_pred             HHhhcccccccceeeeccCCCcchhhhHHHH-HHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhH
Q psy17630        215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGV-ICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFD  293 (372)
Q Consensus       215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (372)
                      +...+.... ....++.|.+|++.|++..+. .+....++.++++.                               +.+
T Consensus       326 g~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~-------------------------------~~G  373 (420)
T PRK09528        326 AFEVPFLLV-GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST-------------------------------LAG  373 (420)
T ss_pred             HHHHHHHHH-HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH-------------------------------HHH
Confidence            333322222 223677888999999887665 46677888899998                               889


Q ss_pred             HHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630        294 DVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE  325 (372)
Q Consensus       294 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e  325 (372)
                      .+.+..||+..|.+.+++.++..++.++..++
T Consensus       374 ~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        374 NLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999988888877776665544443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.65  E-value=2.8e-15  Score=140.29  Aligned_cols=236  Identities=13%  Similarity=0.079  Sum_probs=133.8

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChh---HHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPV---YLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSL   92 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~---~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (372)
                      ||+.|++.   +++.++..++.++++||+|+   |+.+    ++.+...++.+.++.+.++.....+   +.+...+..+
T Consensus       167 wr~~f~~~---~~~~l~~~~~~~~~~~~~p~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  236 (412)
T TIGR02332       167 WQWLFLLE---GFPSVILGVMTWFWLDDSPDKAKWLDE----EDKKALKEMIDNDQLTLEQPEGAFA---HAAMPQRSML  236 (412)
T ss_pred             hhHHHHHH---HHHHHHHHHHHhhccCCCcccCCCCCH----HHHHHHHHHHHhccccccccccccc---cccccHHHHH
Confidence            99999998   78877777778888999985   2211    1111111111111100000000000   0000011123


Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc--CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy17630         93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT--NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP  170 (372)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  170 (372)
                      ++++ ++..     +...+...+.....+.+..|.|.++++.  +++..+.+.......++.+++.++.|+++||++||+
T Consensus       237 ~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~  310 (412)
T TIGR02332       237 REIF-TPAI-----MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK  310 (412)
T ss_pred             HHhc-ChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH
Confidence            3333 2322     2222222333334566778999999875  567777888889999999999999999999999877


Q ss_pred             hh-hHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630        171 LL-LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL  249 (372)
Q Consensus       171 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  249 (372)
                      .. ....++..+.. .+...    ...       ....+........+.. ...+..+....|.+|++.|+++.|+.+..
T Consensus       311 ~~~~~~~~~~~~~~-~~~~~----~~~-------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~  377 (412)
T TIGR02332       311 HHTALPYLFAAAGW-LLASA----TDH-------NLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINAT  377 (412)
T ss_pred             HHHHHHHHHHHHHH-HHHHh----cCC-------HHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHh
Confidence            53 33333333222 11111    111       1111111222211211 11233335557889999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHH
Q psy17630        250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVY  311 (372)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~  311 (372)
                      ++++++++|.                               +.+.+.+..| |...+++.+++
T Consensus       378 ~~~g~~~~p~-------------------------------~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       378 GNIGSALSPF-------------------------------LIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhhhhhhhhh-------------------------------hcccccccCCCCchhHHHHHHH
Confidence            9999999998                               8888888775 77677665554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.65  E-value=6.5e-15  Score=137.06  Aligned_cols=158  Identities=9%  Similarity=0.038  Sum_probs=104.9

Q ss_pred             HHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        122 VVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       122 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      ....+.|.+.+ +.|.+..+.+.......++.+++.++.|+++||+|||+.+..+.....+........     ++    
T Consensus       234 ~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~----  304 (393)
T PRK15011        234 LYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-----HS----  304 (393)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-----hh----
Confidence            34456776665 458888888888777778888899999999999999998776655444332222111     11    


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (372)
                         .+..+....+.....+...+.. ..+..|.+|+ .|++++++.+...+++..+++.                     
T Consensus       305 ---~~~~l~~~~l~~~~~g~~~~~~-~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~---------------------  358 (393)
T PRK15011        305 ---PAILLGLQLLNAIYIGILGGIG-MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGS---------------------  358 (393)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHH---------------------
Confidence               2222222222222222222222 2556888885 5899999988888999999998                     


Q ss_pred             cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630        281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE  325 (372)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e  325 (372)
                                +.+.+.+..+|+..+.+.+++.+++.++.+ +.||
T Consensus       359 ----------l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~  392 (393)
T PRK15011        359 ----------LAGIVAEIWNYHAVFWFALVMIIATLFCLL-RIKD  392 (393)
T ss_pred             ----------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hhcC
Confidence                      888888888998888777777776665544 4454

>PRK03545 putative arabinose transporter; Provisional

Probab=99.65  E-value=1.8e-14  Score=133.91  Aligned_cols=218  Identities=13%  Similarity=0.038  Sum_probs=137.0

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.|++.   +++.++..++.+..+||.|+    + +.+                                ..++.++.
T Consensus       162 w~~~f~~~---~~~~~l~~~~~~~~~~~~~~----~-~~~--------------------------------~~~~~~~~  201 (390)
T PRK03545        162 WRTTFLAI---GGGALITLLLLIKLLPLLPS----E-HSG--------------------------------SLKSLPLL  201 (390)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHhCCCCCC----C-Ccc--------------------------------hHHHHHHH
Confidence            99999999   77777655566666777542    0 000                                00123456


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  174 (372)
                      ++++..+......++....     ......+.+.+.++ .|.+..+.+.......++.+++.++.|+++||++||... .
T Consensus       202 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~  275 (390)
T PRK03545        202 FRRPALVSLYLLTVVVVTA-----HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-I  275 (390)
T ss_pred             HhCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-H
Confidence            7776444333222221111     22223444555554 588888889998999999999999999999999988654 3


Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (372)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (372)
                      +..+..++.......    .+       +.+.......+.+.+.. ...+.....+.|..| +.|++++++.+....++.
T Consensus       276 ~~~~~~~~~~~l~~~----~~-------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~  342 (390)
T PRK03545        276 AIALLLVCLLLLLPA----AN-------SEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGI  342 (390)
T ss_pred             HHHHHHHHHHHHHHH----hc-------hHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHH
Confidence            433333333222111    01       12233333333333332 222223355667766 578999999999999999


Q ss_pred             HHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheec
Q psy17630        255 FVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV  323 (372)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  323 (372)
                      .++|.                               +.+.+.+..|++..+.+.+++.+++.+..+...
T Consensus       343 ~~G~~-------------------------------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        343 GAGAL-------------------------------LGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHH-------------------------------HHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            99998                               899999999999999888888888777665443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.65  E-value=2e-14  Score=129.50  Aligned_cols=229  Identities=16%  Similarity=0.196  Sum_probs=154.1

Q ss_pred             echhhHHhhhhh--hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHH
Q psy17630          4 SGILYTYVIGSL--YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKE   81 (372)
Q Consensus         4 ~G~~~~~~i~~~--Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   81 (372)
                      +|..+|..++..  ||+.|++.   +.++++..+..+..+|  |+-.  +++                            
T Consensus       152 ~GvPLGt~ig~~~GWR~~F~~i---a~l~ll~~~~~~~~lP--~~~~--~~~----------------------------  196 (394)
T COG2814         152 LGVPLGTFLGQLFGWRATFLAI---AVLALLALLLLWKLLP--PSEI--SGS----------------------------  196 (394)
T ss_pred             HhccHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHhCC--CccC--CCC----------------------------
Confidence            466666777766  99999999   8999998888899999  3200  000                            


Q ss_pred             HHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHH
Q psy17630         82 LDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSS  160 (372)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g  160 (372)
                         .+.+..+..+.+|+|+.+.......+..     .+.+....|...+++ ..|++....++....++++.++|+.+.|
T Consensus       197 ---~~~~~~~~~~~l~~p~v~~~l~~t~l~~-----~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gG  268 (394)
T COG2814         197 ---LPGPLRTLLRLLRRPGVLLGLLATFLFM-----TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGG  268 (394)
T ss_pred             ---CCcchhHHHHHhcCchHHHHHHHHHHHH-----cchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHh
Confidence               0011123466778875554444433322     234444445555555 5599999999999999999999999999


Q ss_pred             HHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhh
Q psy17630        161 LLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG  240 (372)
Q Consensus       161 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  240 (372)
                      +++|| +.|+.+.....+..+..+.+.+.    .       .+.+..+....+.++.......... ...++ .-++.+.
T Consensus       269 rl~dr-~~~~~l~~~~~l~a~~~l~l~~~----~-------~~~~~~~~~~~~wg~a~~~~~~~~~-~~~a~-~~p~~~~  334 (394)
T COG2814         269 RLADR-GPRRALIAALLLLALALLALTFT----G-------ASPALALALLFLWGFAFSPALQGLQ-TRLAR-LAPDAAD  334 (394)
T ss_pred             hhccc-cchhHHHHHHHHHHHHHHHHHHh----c-------chHHHHHHHHHHHHHHhhhhhhHHH-HHhcc-cCCCchH
Confidence            99999 88888888777777766664433    1       1123333333333222222222111 33445 3357889


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        241 LALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                      .+.++.....+++...+..                               +.+.+.++.|+....++.+.+.+++.++..
T Consensus       335 ~a~sl~~aa~nlgia~GA~-------------------------------lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         335 LAGSLNVAAFNLGIALGAA-------------------------------LGGLVLDALGYAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998                               888899999998888888888777776655

>PRK15075 citrate-proton symporter; Provisional

Probab=99.64  E-value=1.3e-14  Score=136.77  Aligned_cols=132  Identities=13%  Similarity=0.113  Sum_probs=85.1

Q ss_pred             chHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630        119 GINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE  197 (372)
Q Consensus       119 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (372)
                      .++....|.|.++++ .|++..+.++...+..++.+++.++.|+++||+|||+.+..+..+..+..... . ....... 
T Consensus       253 ~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~-~-~~~~~~~-  329 (434)
T PRK15075        253 SFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPA-L-SWLVAAP-  329 (434)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH-H-HHHHcCC-
Confidence            355677888988876 58888888888888889999999999999999999998877644433222111 1 0111111 


Q ss_pred             cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHH-HHHHHHH
Q psy17630        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL-IEFVVVK  259 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~  259 (372)
                           ..........+.+.+.+. ..+..+.+..|.+|++.|+++.++.+..+.. ++.++|.
T Consensus       330 -----~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~  386 (434)
T PRK15075        330 -----SFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPA  386 (434)
T ss_pred             -----chHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHH
Confidence                 111111212222223322 2223336779999999999999997666554 4777888

>TIGR00895 2A0115 benzoate transport

Probab=99.64  E-value=7e-15  Score=136.69  Aligned_cols=235  Identities=17%  Similarity=0.192  Sum_probs=136.3

Q ss_pred             echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (372)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   77 (372)
                      +|..+++.++..      ||+.|++.   +++..+..++...++||+|++..++ +.++.++..++....+.+.+++  +
T Consensus       152 ~g~~~~~~~~~~l~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~  225 (398)
T TIGR00895       152 IGAAVGGFLAGWLIPVFGWRSLFYVG---GIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--A  225 (398)
T ss_pred             HHHHHHHHHHHHHhhcccceeehhhh---hhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--c
Confidence            344555544433      99999998   7777776777788899999876554 3344333333332211110000  0


Q ss_pred             HHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Q psy17630         78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTF  157 (372)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  157 (372)
                      ..+....++..+...+.+++++ ..+.......... ...........+.|.+.++.|.+..+.+.......++.+++.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  303 (398)
T TIGR00895       226 LPEQKATQGTKRSVFKALFQGK-TARITVLLWLLYF-MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSI  303 (398)
T ss_pred             ccccccccchhhHHHHHHhcch-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            0000000011111122233332 2222222222222 2223345566778887888898888899999999999999999


Q ss_pred             HHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc
Q psy17630        158 FSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD  237 (372)
Q Consensus       158 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  237 (372)
                      +.|+++||+|||+... +..+..+...++...   ..        +.+.......+.+.+.+... +...+++.|.+|++
T Consensus       304 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~  370 (398)
T TIGR00895       304 IFGWLADRLGPRVTAL-LLLLGAVFAVLVGST---LF--------SPTLLLLLGAIAGFFVNGGQ-SGLYALMALFYPTA  370 (398)
T ss_pred             HHHHHHhhcchHHHHH-HHHHHHHHHHHHHHH---hh--------CHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCHH
Confidence            9999999999994443 333333332222211   11        12233333444444444333 34457889999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHH
Q psy17630        238 VKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       238 ~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .|+++.++.+....++..++|.
T Consensus       371 ~~g~~~g~~~~~~~~g~~~g~~  392 (398)
T TIGR00895       371 IRATGVGWAIGIGRLGAIIGPI  392 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.64  E-value=9.2e-15  Score=136.81  Aligned_cols=181  Identities=12%  Similarity=-0.061  Sum_probs=137.4

Q ss_pred             HHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHH
Q psy17630        104 ATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI  183 (372)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~  183 (372)
                      ..+...++.+..+........+..|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.
T Consensus         8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~   87 (412)
T TIGR02332         8 RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAS   87 (412)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            34444444444444445666777788888899999999999999999999999999999999999999999988888888


Q ss_pred             HHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhcc
Q psy17630        184 GALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRH  263 (372)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~  263 (372)
                      ++.++.            ++.+..++...+.+.+.+.. .+....++.|.+|+++|++++++.+....++..+++.    
T Consensus        88 ~~~~~~------------~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~----  150 (412)
T TIGR02332        88 TATMFA------------TGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLI----  150 (412)
T ss_pred             HHHHHh------------cCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            776554            12334455555555555543 3444467899999999999999999988888888887    


Q ss_pred             ccCCcccccchhhhhhhcchhhhhhhhhhHHHHH------hcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        264 RFTPDVKGLALGVICILGSLIEFVVVKTFDDVER------AFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                                                 +.+.+.+      ..|||+.|.+.++.+++..++.++++||+++
T Consensus       151 ---------------------------~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       151 ---------------------------LSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             ---------------------------HHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence                                       5555543      3699999999888877776666667888754

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.64  E-value=8.3e-16  Score=136.86  Aligned_cols=182  Identities=10%  Similarity=0.016  Sum_probs=153.4

Q ss_pred             hhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHH
Q psy17630        101 TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA  180 (372)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~  180 (372)
                      ++++.++..++........-..+..-.|.+.++.++|..|.+.+.+...+...++-++.|.++||.+.|..+.+++++++
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa  105 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA  105 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence            44556666655555544445577888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHh
Q psy17630        181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKT  260 (372)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~  260 (372)
                      +..+++++..            +...+.++..+.+.+.+.++.|.. -.+...+|+++||+..++.+...++|+.+.|. 
T Consensus       106 i~nil~Gfs~------------s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~-  171 (448)
T COG2271         106 IVNILFGFSP------------SLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPL-  171 (448)
T ss_pred             HHHHHHhhhh------------HHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHHH-
Confidence            9999988762            245556666777788888888777 77799999999999999999999999999998 


Q ss_pred             hccccCCcccccchhhhhhhcchhhhhhhhhh--HHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        261 VRHRFTPDVKGLALGVICILGSLIEFVVVKTF--DDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                                                    +.  ..+..+.+||..|++-++++++..++.++..+++
T Consensus       172 ------------------------------~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         172 ------------------------------VALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             ------------------------------HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                                          66  7777778999999999999998888887776654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.63  E-value=2.1e-14  Score=141.33  Aligned_cols=144  Identities=17%  Similarity=0.065  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHH
Q psy17630        103 KATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAIC  182 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~  182 (372)
                      +.+++.+.+..+........+...+|.+.+++|.+..+.+++.+...++.+++.+++|+++||+|||+.+++++++.+++
T Consensus       166 ~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~  245 (742)
T TIGR01299       166 WALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFF  245 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            33333333333333333345666788888888999999999999999999999999999999999999999998888877


Q ss_pred             HHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        183 IGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .++..+..            +.+.+++..++.+++.+... +...+++.|.+|++.|+..+++...+..+|.++++.
T Consensus       246 ~ll~afa~------------s~~~llv~R~l~G~g~g~~~-p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~  309 (742)
T TIGR01299       246 AFFSSFVQ------------GYGFFLFCRLLSGFGIGGAI-PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAA  309 (742)
T ss_pred             HHHHHHHh------------hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76665431            13344555555555554433 556689999999999999999998888888877775

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00895 2A0115 benzoate transport

Probab=99.62  E-value=4.9e-15  Score=137.71  Aligned_cols=171  Identities=12%  Similarity=-0.003  Sum_probs=129.9

Q ss_pred             HHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHH
Q psy17630        113 CFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYL  192 (372)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~  192 (372)
                      .+..........++.|.+.++.|.+..+.++......++..++.++.|+++||+|||+.+..+.++..++.++....   
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---  102 (398)
T TIGR00895        26 MLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA---  102 (398)
T ss_pred             HHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc---
Confidence            33333334566778888888899999999999999999999999999999999999999999888777776665433   


Q ss_pred             hhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCccccc
Q psy17630        193 LKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGL  272 (372)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (372)
                               .+.+..++...+.+.+.+.. .+...+++.|.+|++.|++++++......++..+++.             
T Consensus       103 ---------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~-------------  159 (398)
T TIGR00895       103 ---------TNVTQLLILRFLAGLGLGGL-MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGF-------------  159 (398)
T ss_pred             ---------cchHHHHHHHHHHhcccccc-hhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHH-------------
Confidence                     11233344444444444433 3444588899999999999999999999999999998             


Q ss_pred             chhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        273 ALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                        +.+.+.+..+|+..+.+.++++.+..++.+.++||+.
T Consensus       160 ------------------~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       160 ------------------LAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             ------------------HHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence                              7778888889998888877666666666565677764

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.62  E-value=3.3e-14  Score=132.33  Aligned_cols=166  Identities=10%  Similarity=0.038  Sum_probs=118.6

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      +.....+.|.++++.|.+..+.+.......++.+++.++.+++.||+|||+.+..+..+..++..++...   .. .   
T Consensus       221 ~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~---~~-~---  293 (393)
T PRK09705        221 YASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL---PL-Q---  293 (393)
T ss_pred             HHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc---cc-h---
Confidence            4566778888888889999999999999999999999999999999999998888776666655443221   10 0   


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC  278 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (372)
                          ...  ....+.+.+.+.... .......+.. |++.|++..++.+..+.+++.++|.                   
T Consensus       294 ----~~~--~~~~l~g~g~g~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~-------------------  347 (393)
T PRK09705        294 ----LPV--LWAMVCGLGLGGAFP-LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPW-------------------  347 (393)
T ss_pred             ----HHH--HHHHHHHHhccchHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence                111  112223333333322 2323445555 4678999999999999999999999                   


Q ss_pred             hhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhheeccCCCCCC
Q psy17630        279 ILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKNKS  330 (372)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  330 (372)
                                  +.+.+.+..| +...+.+.+..+++..+....+.||++++.
T Consensus       348 ------------~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        348 ------------FSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             ------------HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence                        8888888876 555677777777777666666788876653

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.61  E-value=9.6e-15  Score=137.69  Aligned_cols=163  Identities=9%  Similarity=0.056  Sum_probs=127.2

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ......+.|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++.++.++.+++.+++....         
T Consensus        39 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------  109 (434)
T PRK11663         39 RKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS---------  109 (434)
T ss_pred             hhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh---------
Confidence            34567788899999999999999999999999999999999999999999999999888888877665441         


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                         +.+...+...+.+.+.+.... ....++.|.+|+++|++++++.+....+++.+++.                    
T Consensus       110 ---~~~~l~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~--------------------  165 (434)
T PRK11663        110 ---SLWAFALLWVLNAFFQGWGWP-VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPL--------------------  165 (434)
T ss_pred             ---HHHHHHHHHHHHHHHHHccch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence               123333334444444444433 33478899999999999999999999999999998                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                                 +.+.+.+..+|++.|.+.++++++..+...+++||+
T Consensus       166 -----------~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        166 -----------VVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             -----------HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                       888888889999999888777665554444455654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.61  E-value=6.9e-15  Score=139.35  Aligned_cols=154  Identities=12%  Similarity=0.039  Sum_probs=103.6

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc--CCcchhhHhh--HHHHHHHHHHHHHHHHhhcc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPLLLISD--ICMAICIGALGYYFYLLKLD  196 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~~~~--~~~~~~~~~~~~~~~~~~~~  196 (372)
                      .....+.+.+.++.|++..+.+...++.+++.+++.++.|+++||.  ++|+...++.  +..+++.+.....     + 
T Consensus       258 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-----~-  331 (455)
T TIGR00892       258 FAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-----G-  331 (455)
T ss_pred             cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-----c-
Confidence            3445677777788899999999999999999999999999999984  3343333322  2222222221111     1 


Q ss_pred             ccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhh
Q psy17630        197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGV  276 (372)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (372)
                            +.+..++...+.+.+.+.. .+....++.|.+|++.+++++++.+....++++++|.                 
T Consensus       332 ------~~~~~~i~~~~~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~-----------------  387 (455)
T TIGR00892       332 ------DYTGLVIYCIFFGLSFGSV-GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPP-----------------  387 (455)
T ss_pred             ------hHHHHHHHHHHHHHHhchH-HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccc-----------------
Confidence                  1233333444444444333 3344477789999999999999999999999999998                 


Q ss_pred             hhhhcchhhhhhhhhhHHHHHhc-ccchhhHHHHHHHHHHHhh
Q psy17630        277 ICILGSLIEFVVVKTFDDVERAF-GTGVAFGTFAVYCIIGTFF  318 (372)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~  318 (372)
                                    +.+.+.+.. +|+..|++.+++.+++.+.
T Consensus       388 --------------i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       388 --------------LAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             --------------ceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence                          777777766 4877887777766655543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.60  E-value=1.4e-14  Score=134.21  Aligned_cols=164  Identities=13%  Similarity=0.035  Sum_probs=130.6

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      .......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+++....          
T Consensus        11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~----------   80 (399)
T TIGR00893        11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG----------   80 (399)
T ss_pred             HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc----------
Confidence            4556667778888899999999999999999999999999999999999999999888887777665541          


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (372)
                        +.+..++...+.+.+.+... +....++.|.+|+++|++++++......++..+++.                     
T Consensus        81 --~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~---------------------  136 (399)
T TIGR00893        81 --AYVSLYILRVLLGAAEAPFF-PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGP---------------------  136 (399)
T ss_pred             --CHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHH---------------------
Confidence              23444555555555544433 344478899999999999999999999999999998                     


Q ss_pred             cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                                +.+.+.+..+|++.+.+.++++++..+..+++.||+++
T Consensus       137 ----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       137 ----------LVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             ----------HHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence                      77878888899999988888877777666656666543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.59  E-value=2.5e-14  Score=133.08  Aligned_cols=161  Identities=14%  Similarity=0.052  Sum_probs=125.7

Q ss_pred             HHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630        122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (372)
Q Consensus       122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (372)
                      ......|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+.+.+.            
T Consensus        27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------   94 (390)
T PRK03545         27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------   94 (390)
T ss_pred             HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------------
Confidence            34445788889999999999999999999999999999999999999999999988888887776554            


Q ss_pred             cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG  281 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (372)
                      ++.+..++...+.+.+.+. ..+....++.|.+|+++|++++++......++..++|.                      
T Consensus        95 ~~~~~l~~~r~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~----------------------  151 (390)
T PRK03545         95 WNFTVLLISRIGIAFAHAI-FWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLP----------------------  151 (390)
T ss_pred             ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhh----------------------
Confidence            1233444444444333332 23344477899999999999999999999999999988                      


Q ss_pred             chhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                               +.+.+.+..||++.|++.++++++..+..+...||.
T Consensus       152 ---------l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        152 ---------LGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             ---------HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence                     777777888999999998888777766655556654

>KOG2533|consensus

Probab=99.59  E-value=1.3e-14  Score=136.20  Aligned_cols=142  Identities=16%  Similarity=0.123  Sum_probs=95.4

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChh--HHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPV--YLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLV   93 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~--~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (372)
                      |||.|++.   |++.++..++.++++|+.|.  |..++++.+-   ..++.++.+.+..           .++.+...++
T Consensus       205 W~~~FiI~---G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~---~~~~~~~~~~~~~-----------~~~~~~~~~~  267 (495)
T KOG2533|consen  205 WRWLFIIE---GVITLVLGIVVFFFLPDNPSKAWFLTDEEKEL---VVERLRESPSGGI-----------ENKFKWKGFK  267 (495)
T ss_pred             ceeehhHH---HHHHHHHHheEEEEecCChhhccccchHHHHH---HHHHHHhccCCCc-----------ccccCHHHHH
Confidence            99999999   99999999999999999997  3322222111   1222221111100           0113445688


Q ss_pred             HHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh----cCC
Q psy17630         94 EIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGR  168 (372)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~gr  168 (372)
                      +.+++|..|-..     +..++.....+.+.+|+|.++++ .|++..+++.+.++..++++++.+++|+++||    ..+
T Consensus       268 ~a~~dp~vw~~~-----l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~  342 (495)
T KOG2533|consen  268 EALKDPGVWPFS-----LCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFAR  342 (495)
T ss_pred             HHHhchhHHHHH-----HHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHH
Confidence            888887433322     22222233356788999999998 46899999999999999999999999999999    555


Q ss_pred             cchhhHhhHHH
Q psy17630        169 RPLLLISDICM  179 (372)
Q Consensus       169 r~~~~~~~~~~  179 (372)
                      |......+.+.
T Consensus       343 ~~~~~~~~~~~  353 (495)
T KOG2533|consen  343 RLLFIVFLCLY  353 (495)
T ss_pred             HHHHHHHHHHH
Confidence            55554444333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.59  E-value=9.3e-14  Score=128.88  Aligned_cols=151  Identities=19%  Similarity=0.106  Sum_probs=99.5

Q ss_pred             hHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      ......+.|.+. ++.|.+..+.+.......+...++.++.|+++||+|||+.+..+..+..+..+...... ...    
T Consensus       235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~----  309 (394)
T TIGR00883       235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL-LDS----  309 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-hcC----
Confidence            445566777777 45688888888888889999999999999999999999987755444433332111111 111    


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHH-HHHHHHHHHHHHhhccccCCcccccchhhh
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVIC-ILGSLIEFVVVKTVRHRFTPDVKGLALGVI  277 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (372)
                         .+.+.........+.+.+.... ....++.|.+|++.|+++.++.+ ....+++.++|.                  
T Consensus       310 ---~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~------------------  367 (394)
T TIGR00883       310 ---GSFTLFFFLVLGLALIGGMYTG-PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPY------------------  367 (394)
T ss_pred             ---CchHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHH------------------
Confidence               1123333333444444433333 34478899999999999988854 444567778888                  


Q ss_pred             hhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHH
Q psy17630        278 CILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAV  310 (372)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~  310 (372)
                                   +.+.+.+..| |+..++....
T Consensus       368 -------------~~g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       368 -------------IAAALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             -------------HHHHHHHHcCcchhHHHHHHH
Confidence                         8888888887 6655444443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.59  E-value=1.1e-13  Score=132.36  Aligned_cols=189  Identities=9%  Similarity=0.036  Sum_probs=118.2

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHH-HHhcCCCCCChhhHH-HHHHHHHHHHHHHHHHHHhhcCC
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIATNSKIISPNYGQ-NIVGFIQVIMTFFSSLLVDKAGR  168 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~gr  168 (372)
                      ++++.+++++.+......+ +....    ......+.+.+ .++.|++..+.+... ....++.+++.+++|+++||+||
T Consensus       214 ~l~~~~~~~~~~~~ll~~~-l~~~~----~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~  288 (491)
T PRK11010        214 PLRDFFGRNNAWLILLLIV-LYKLG----DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSL  288 (491)
T ss_pred             HHHHHHcCcCHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4566776654443332222 11111    12223334444 455799999988887 45668999999999999999999


Q ss_pred             cchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHH
Q psy17630        169 RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI  248 (372)
Q Consensus       169 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  248 (372)
                      |+.+.++.++.++..+.+..... .. .      +.+.......+.....+.+.... +++..++.+++.+++..++.+.
T Consensus       289 ~~~l~i~~~l~~l~~l~~~~l~~-~~-~------~~~~l~~~~~l~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~gl~~s  359 (491)
T PRK11010        289 FRALMIFGILQGVSNAGYWLLSI-TD-K------NLYSMGAAVFFENLCGGMGTAAF-VALLMTLCNKSFSATQFALLSA  359 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cc-c------cHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHHHH
Confidence            98877666555554433221111 00 1      11222222222222222222222 4677888898899999999999


Q ss_pred             HHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630        249 LGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE  325 (372)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e  325 (372)
                      ...++..+++.                               +.+.+.+..||+..|.+.+++++++.+..+ ..++
T Consensus       360 ~~~lg~~~~~~-------------------------------~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~-~~~~  404 (491)
T PRK11010        360 LSAVGRVYVGP-------------------------------VAGWFVEAHGWPTFYLFSVAAAVPGLLLLL-VCRQ  404 (491)
T ss_pred             HHHHHHHHHHH-------------------------------HHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HHHh
Confidence            99998888888                               888888989998888888888877766655 3343

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.57  E-value=6.9e-14  Score=130.13  Aligned_cols=161  Identities=12%  Similarity=0.114  Sum_probs=126.3

Q ss_pred             HHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630        122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (372)
Q Consensus       122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (372)
                      ......|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+.....            
T Consensus        38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------  105 (394)
T PRK10213         38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------  105 (394)
T ss_pred             HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence            34446778888999999999999999999999999999999999999999999999988877665443            


Q ss_pred             cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG  281 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (372)
                      .+.+..++...+.+.+.+.. .+....++.|.+|+++|+.+.++......++..++|.                      
T Consensus       106 ~~~~~l~~~r~l~G~~~g~~-~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~----------------------  162 (394)
T PRK10213        106 NSFSLLLIGRACLGLALGGF-WAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAP----------------------  162 (394)
T ss_pred             ChHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            12344455555555554443 3344477899999999999999999999999999998                      


Q ss_pred             chhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                               +.+.+.+..+|++.|++.++++++..+......||+
T Consensus       163 ---------l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        163 ---------LGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             ---------HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence                     888888889999999888777666555444445664

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.57  E-value=8.9e-14  Score=132.41  Aligned_cols=243  Identities=12%  Similarity=0.028  Sum_probs=136.2

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.|++.   +++.++..++.+++.||+|+.... .+.+| ++.+++...              ..+.+.+.+.+++++
T Consensus       197 w~~~f~i~---~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~-~~~i~~~~~--------------~~~~~~~~~~~~~~~  257 (465)
T TIGR00894       197 WPMIFYVF---GIVGCAWSLLWFVFPADDPSIHPC-ISKFE-KKYINSSLQ--------------GQKGSTRQSLPIKAI  257 (465)
T ss_pred             CCeehhhh---hHHHHHHHHHHHHHhcCCcccCCC-CCHHH-HHHHHhhcc--------------cccCCCCCCCCHHHH
Confidence            99999999   888877666777778888852110 11111 111110000              000001123357788


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhh-
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL-  173 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-  173 (372)
                      ++++..+...     +..+....+.+.+..|+|.++++ .|++..+.++......++..++.++.|+++||+++|+... 
T Consensus       258 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~  332 (465)
T TIGR00894       258 PKSLPVWAIW-----FAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL  332 (465)
T ss_pred             hcCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence            8776333222     22223333356677788888766 5888889999999999999999999999999987553221 


Q ss_pred             --HhhHHHHHHHHHHHHH-HHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHH
Q psy17630        174 --ISDICMAICIGALGYY-FYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG  250 (372)
Q Consensus       174 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  250 (372)
                        ...+...++.+..... .......     ...+..+....+.+.+.+.. .+..+....|..|. .+|.+.++.+..+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~-~~g~~~g~~~~~~  405 (465)
T TIGR00894       333 TAARKIFNGIGGLGPGIFAYALPYLS-----AAFYLTIIILTLANAVSSGP-LAGVLINSLDLAPR-FLGFIKGITGLPG  405 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC-----CchHHHHHHHHHHHHHhhhh-hhhhhhchhhcChh-HHHHHHHHHHHHH
Confidence              0111111111111100 0001000     01222223333332222222 22232444566664 8899999999999


Q ss_pred             HHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhc---ccchhhHHHHHHHHHHHhhhh
Q psy17630        251 SLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF---GTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~  320 (372)
                      .++++++|.                               +.+.+.+..   +|...|.+.+++.+++.++..
T Consensus       406 ~l~~~i~p~-------------------------------l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       406 FIGGLIAST-------------------------------LAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             HHHHHHHHH-------------------------------hhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            999999998                               666655432   366678888777777766544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.57  E-value=4.8e-14  Score=130.69  Aligned_cols=166  Identities=14%  Similarity=0.114  Sum_probs=128.3

Q ss_pred             chHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      +........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+.....         
T Consensus        20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---------   90 (385)
T TIGR00710        20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS---------   90 (385)
T ss_pred             HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---------
Confidence            34555566788888899999999999999999999999999999999999999999888888777765443         


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC  278 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (372)
                         .+.+...+...+.+.+.+... +....++.|.+|+++|++..++.+....++..+++.                   
T Consensus        91 ---~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-------------------  147 (385)
T TIGR00710        91 ---NNIETLLVLRFVQAFGASAGS-VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPL-------------------  147 (385)
T ss_pred             ---ccHHHHHHHHHHHHcchhHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence               112333444444443333332 334478899999999999999999999999999988                   


Q ss_pred             hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                                  +.+.+.+..+|+..+++.+++.++..+..++..||+++
T Consensus       148 ------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       148 ------------LGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP  185 (385)
T ss_pred             ------------HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence                        77778888899998888888777776666656777643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG2532|consensus

Probab=99.57  E-value=8.6e-14  Score=130.30  Aligned_cols=237  Identities=15%  Similarity=0.181  Sum_probs=154.8

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhh---hhhhH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQ---KKKSL   92 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   92 (372)
                      |+++|++.   +++++++.++++++..|+|.-   +..                -.++|.+.+++.+.+++.   .+.|+
T Consensus       194 W~sifY~~---g~~g~i~~~~w~~~~~d~P~~---h~~----------------is~~El~~I~~~k~~~~~~~~~~vP~  251 (466)
T KOG2532|consen  194 WPSIFYVF---GIVGLIWFILWFLFYSDSPSK---HPN----------------ISEKELKYIEKGKSEAHVKKKPPVPY  251 (466)
T ss_pred             CchHHHHH---HHHHHHHHHHHHHHhcCCccc---CCC----------------CCHHHHHHHHhcccccccCCCCCCCH
Confidence            99999999   999999888888888899862   111                122222233322222211   36789


Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc--
Q psy17630         93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR--  169 (372)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--  169 (372)
                      +++++++     .++...+..+....+.+.+..|+|.|+++. |++..+.++..++..+...+..+++|.++||.-+|  
T Consensus       252 ~~i~ts~-----~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l  326 (466)
T KOG2532|consen  252 KAILTSP-----PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL  326 (466)
T ss_pred             HHHHcCH-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9999997     444444555555556788999999999886 99999999999999999999999999999998663  


Q ss_pred             -------chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhH
Q psy17630        170 -------PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLA  242 (372)
Q Consensus       170 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  242 (372)
                             ..-.++....+++++.+++.   ..       ...+..+.++.+.....+....... .-..|. .++.-+..
T Consensus       327 s~t~~rkifn~i~~~~~ai~l~~l~~~---~~-------~~~~~a~~~l~~~~~~~g~~~~Gf~-~~~~~~-apq~a~~l  394 (466)
T KOG2532|consen  327 SETTVRKIFNTIAFGGPAVFLLVLAFT---SD-------EHRLLAVILLTIAIGLSGFNISGFY-KNHQDI-APQHAGFV  394 (466)
T ss_pred             chHhHHHHHHhHHHHHHHHHHHeeeec---CC-------CcchHHHHHHHHHHHHcccchhhhH-hhhhhc-cchHHHHH
Confidence                   12223333333433333322   11       1122333333332222222211111 122222 45677999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHH---HhcccchhhHHHHHHHHHHHhhh
Q psy17630        243 LGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVE---RAFGTGVAFGTFAVYCIIGTFFV  319 (372)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~  319 (372)
                      +++.+....+.++++|.                               +.+.+.   +...|+..|++.+++.+++.++.
T Consensus       395 ~g~~~~~~~~~~~~~P~-------------------------------~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f  443 (466)
T KOG2532|consen  395 MGIINFVGALAGFIAPL-------------------------------LVGIIVTDNTREEWRIVFLIAAGILIVGNIIF  443 (466)
T ss_pred             HHHHHHHHHHHHHHHHH-------------------------------heeeEeCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence            99999999999999998                               555555   33479999999999988888665


Q ss_pred             hee
Q psy17630        320 YFV  322 (372)
Q Consensus       320 ~~~  322 (372)
                      .++
T Consensus       444 ~~f  446 (466)
T KOG2532|consen  444 LFF  446 (466)
T ss_pred             eEe
Confidence            444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.56  E-value=3.7e-14  Score=132.57  Aligned_cols=164  Identities=10%  Similarity=-0.022  Sum_probs=124.4

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+.+...          
T Consensus        31 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------  100 (406)
T PRK11551         31 LQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA----------  100 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------
Confidence            4556667788888999999999999999999999999999999999999999999888777766654433          


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                        .+.+..++...+.+.+.+... +....++.|.+|+++|++++++.+....+++.+++.                    
T Consensus       101 --~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~--------------------  157 (406)
T PRK11551        101 --WDFPSLLVARLLTGVGLGGAL-PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASV--------------------  157 (406)
T ss_pred             --ccHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence              113344444455544444333 344478899999999999999999888888888887                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                 +...+.+..+|+..+++.+++.++..++...++||+.
T Consensus       158 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        158 -----------IGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             -----------HHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence                       6666667788988888877666666555555667753

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.56  E-value=1.1e-13  Score=128.94  Aligned_cols=178  Identities=13%  Similarity=0.064  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630        105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG  184 (372)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~  184 (372)
                      .+..+.+................|.+.+++|.+..+.++..+...++..++.++.|+++||+|||++++.+.++.+++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~   92 (405)
T TIGR00891        13 AFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTL   92 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            33444444444444556677778888888999999999999999999999999999999999999999998888877776


Q ss_pred             HHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccc
Q psy17630        185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHR  264 (372)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  264 (372)
                      .+.+.            .+.+..+....+.+.+.+.... ....++.|.+|+++|+++.++......++..+++.     
T Consensus        93 ~~~~~------------~~~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----  154 (405)
T TIGR00891        93 ACGFA------------PGYITMFIARLVIGIGMGGEYG-SSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQ-----  154 (405)
T ss_pred             HHHHh------------ccHHHHHHHHHHHHhhhhhhhH-HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHH-----
Confidence            65443            1123344444555444443333 33478899999999999999999998999988887     


Q ss_pred             cCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc--cchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        265 FTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG--TGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                                +.+.+.+..+  |+..+.+.+...++.. +.....||++
T Consensus       155 --------------------------l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~  192 (405)
T TIGR00891       155 --------------------------VYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAE  192 (405)
T ss_pred             --------------------------HHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCCh
Confidence                                      6666666655  8888876554444433 3334567654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.56  E-value=4.2e-13  Score=125.17  Aligned_cols=153  Identities=16%  Similarity=0.138  Sum_probs=108.0

Q ss_pred             HHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630        122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (372)
Q Consensus       122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (372)
                      ....+.+.+..+.|.  .+.+.......++.+++.++.|++.||+|||+.+..+..+.+++.+.....     +      
T Consensus       234 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~------  300 (399)
T PRK05122        234 TIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-----P------  300 (399)
T ss_pred             HHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----c------
Confidence            344556666666665  344566677788889999999999999999998888777666665544332     0      


Q ss_pred             cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG  281 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (372)
                       +.+..+....+.+.+.+.... .......|..|++.|+++.++.+....++..+++.                      
T Consensus       301 -~~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~----------------------  356 (399)
T PRK05122        301 -SPWMALIGAALTGFGFSLVFP-ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGP----------------------  356 (399)
T ss_pred             -cHHHHHHHHHHHHHhHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence             122333334444444443332 22245578889999999999999999999888888                      


Q ss_pred             chhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                               +.+.+.+..||+..+++.+++++++.+..+
T Consensus       357 ---------~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (399)
T PRK05122        357 ---------LAGLVASWFGYPSIFLAAALAALLGLALTW  386 (399)
T ss_pred             ---------HHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence                     888888888998888888877777766655

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.56  E-value=5.6e-14  Score=133.88  Aligned_cols=153  Identities=14%  Similarity=0.061  Sum_probs=91.4

Q ss_pred             HHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc-------hhhHhhHHHHHHHHHHHHHHHHh
Q psy17630        122 VVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP-------LLLISDICMAICIGALGYYFYLL  193 (372)
Q Consensus       122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-------~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
                      ....+.|.++.+ .|++..+.+....+..++.+++.+++|+++||++||+       .......+.++..+++...    
T Consensus       270 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~----  345 (476)
T PLN00028        270 TMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA----  345 (476)
T ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc----
Confidence            344556666544 5989888999999999999999999999999998762       1111211111111111110    


Q ss_pred             hccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccc
Q psy17630        194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLA  273 (372)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (372)
                       .       +.+..+....+++.+.+...+ ..+.+..|..| +.||+..++.+..+.++++++|.              
T Consensus       346 -~-------~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~--------------  401 (476)
T PLN00028        346 -N-------SLGAAIVVMILFSIFVQAACG-ATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQL--------------  401 (476)
T ss_pred             -c-------hHHHHHHHHHHHHHHHHHhhh-hhcccCcccCh-hhchhhhhhhhccccHHHHHHHH--------------
Confidence             0       112222222233333222222 23355566654 68999999998888888888776              


Q ss_pred             hhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        274 LGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                                       +.+ ..+..+|+..|.+.+++.+++.++.+
T Consensus       402 -----------------l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~  430 (476)
T PLN00028        402 -----------------LFF-TGSSYSTETGISLMGVMIIACTLPVA  430 (476)
T ss_pred             -----------------HHH-hcCCccHhhHHHHHHHHHHHHHHHHH
Confidence                             433 11233577788888777777766554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.55  E-value=1.3e-13  Score=129.02  Aligned_cols=154  Identities=8%  Similarity=0.012  Sum_probs=104.0

Q ss_pred             HHhhHHHHHhcCCCCCC----hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        124 IFYLKRILIATNSKIIS----PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       124 ~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ..+.+.+..+.+.+..+    .+....+..++.+++.+..|+++||+|||+.+..+..+..++.+.....     +    
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~----  309 (408)
T PRK09874        239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-----Q----  309 (408)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-----c----
Confidence            34445555554322222    2344455667788888999999999999999888877666555443222     0    


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                         ..+...+...+.+.+.+... +...+++.+..|++.|++.+++.+....++..++|.                    
T Consensus       310 ---~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~--------------------  365 (408)
T PRK09874        310 ---TPLQLGILRFLLGAADGALL-PAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPL--------------------  365 (408)
T ss_pred             ---cHHHHHHHHHHHHhhhHhhH-HHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHH--------------------
Confidence               12333333334444443332 233355677788899999999999999999999998                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhhe
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF  321 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  321 (372)
                                 +.+.+.+..||+..|.+.+++.++..+..++
T Consensus       366 -----------~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        366 -----------MGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             -----------HHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence                       8888888889999999888888877766653

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.55  E-value=2.6e-13  Score=125.88  Aligned_cols=177  Identities=12%  Similarity=0.023  Sum_probs=128.2

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP  170 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  170 (372)
                      +.++++|+|+.+...+..++...     .......+.|.+.++.|.+..+.+.......+..+++.++.+++.||+|+|+
T Consensus       197 ~~~~~l~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~  271 (382)
T TIGR00902       197 AFIALLKNPMNLRFLAAVCLIQG-----AHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD  271 (382)
T ss_pred             hHHHHHcChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH
Confidence            35677888754433332222222     2344555777778889999999999999999999999999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHH-H
Q psy17630        171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI-L  249 (372)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~  249 (372)
                      .+.++.+...+....+...            ++.+..+....+.+..++....... .++.+. |++.|++++++.+. .
T Consensus       272 ~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~q~l~g~~~~~~~~~~~-~~i~~~-~~~~~~~~q~~~~~~~  337 (382)
T TIGR00902       272 LLLISAIACVGRWAIIGAI------------EAFPLIFLLQILHCGTFAVCHLAAM-RYIAAQ-PGSEIAKLQALYNALA  337 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhH------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhC-CHhhHHHHHHHHHHHH
Confidence            9999988888877665443            1234455556666666665544443 677887 99999999999764 5


Q ss_pred             HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhh
Q psy17630        250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFF  318 (372)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  318 (372)
                      ..++..+++.                               +.+.+.+..|. ..|+..+++.+++.++
T Consensus       338 ~g~g~~~g~~-------------------------------~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       338 MGGLIAIFTA-------------------------------FAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHH-------------------------------HHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            5678888888                               88899998886 5677777777665544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.55  E-value=1.1e-13  Score=124.62  Aligned_cols=161  Identities=16%  Similarity=0.089  Sum_probs=140.0

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      -+.....+|.+.+|+|.+..+.+...+.+..+..++.++...+.||+.||++++..+.++.++.++.+++          
T Consensus        29 Efv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA----------   98 (394)
T COG2814          29 EFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA----------   98 (394)
T ss_pred             HHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh----------
Confidence            4567788999999999999999999999999999999999999999999999999999999999998877          


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                        ++.+..++...+.+...+..+. +..+...++.|+++|++++++......++..++..                    
T Consensus        99 --p~f~~Ll~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvP--------------------  155 (394)
T COG2814          99 --PSFAVLLLARALAGLAHGVFWS-IAAALAARLVPPGKRGRALALVFTGLTLATVLGVP--------------------  155 (394)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhcc--------------------
Confidence              2244555666666655554444 55588899999999999999999888888888887                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheecc
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP  324 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  324 (372)
                                 +...+-+.+|||.+|+..++++++..+..+..+|
T Consensus       156 -----------LGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         156 -----------LGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             -----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                       8888899999999999999999999998888888

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.55  E-value=8.4e-14  Score=132.01  Aligned_cols=165  Identities=11%  Similarity=0.031  Sum_probs=116.5

Q ss_pred             HHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccc
Q psy17630        123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG  202 (372)
Q Consensus       123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (372)
                      +....|.+.++ |.+..+.++..+...++..+++++.|+++||+|||++++.+.++.+++.+.+.+....        ..
T Consensus        48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~--------~~  118 (452)
T PRK11273         48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--------TS  118 (452)
T ss_pred             HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc--------cc
Confidence            45567777666 9999999999999999999999999999999999999999988888877766543100        01


Q ss_pred             ccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcc
Q psy17630        203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGS  282 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (372)
                      +.+..+....+.+.+.+....+.. ..+.|.+|+++|++++++.+....+++.+.+..                      
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l----------------------  175 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL----------------------  175 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHH-HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH----------------------
Confidence            122334444455555444443343 567889999999999999888887776444430                      


Q ss_pred             hhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        283 LIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       283 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                              .........+|++.|++.+.++++..++..+++||+.
T Consensus       176 --------~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        176 --------FLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             --------HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence                    2122223348998998888777776666666677653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.55  E-value=2.1e-13  Score=127.04  Aligned_cols=240  Identities=12%  Similarity=0.143  Sum_probs=143.7

Q ss_pred             eechhhHHhhhhh-----hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630          3 VSGILYTYVIGSL-----YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (372)
Q Consensus         3 ~~G~~~~~~i~~~-----Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   77 (372)
                      ++|..+++.++..     ||+.|++.   ++++++..++.+...||+|+.       ++.++    ..++          
T Consensus       143 ~~g~~~g~~~~g~l~~~~~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~----------  198 (396)
T TIGR00882       143 CVGWALCASIAGILFSIDPQIVFWLG---SGFALILMLLLMFAKPKAPSS-------ATVAN----ALGA----------  198 (396)
T ss_pred             ccHHHHHHHHHhhhhccCchHHHHHH---HHHHHHHHHHHHHhCCCCchh-------hhhhc----cccc----------
Confidence            4556666666554     99999998   777777555555555665431       00000    0000          


Q ss_pred             HHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc----CCCCCChhhHHHHHHHHHH
Q psy17630         78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT----NSKIISPNYGQNIVGFIQV  153 (372)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~  153 (372)
                           ++++++..+.+++++++..+...+..+.....     +.....+.+.+.++.    +.+....+.......+...
T Consensus       199 -----~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~  268 (396)
T TIGR00882       199 -----NASAFSLKLALELFRQRKFWMFVLYVVGVACV-----YDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNA  268 (396)
T ss_pred             -----ccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence                 00011223467788887554333322222211     222222344444433    3344456777778888889


Q ss_pred             HHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccC
Q psy17630        154 IMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL  233 (372)
Q Consensus       154 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  233 (372)
                      ++.+..|++.||+|||+.+.++.++.++........            .+.+.......+.+.+...... ....+..+.
T Consensus       269 ~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~  335 (396)
T TIGR00882       269 LIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------------TTALEVVILKMLHAFEVPFLLV-GCFKYITSQ  335 (396)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc------------CChHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            999999999999999999888877666655443221            1133333333333333222111 222455677


Q ss_pred             CCcchhhhHHHH-HHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHH
Q psy17630        234 FTPDVKGLALGV-ICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC  312 (372)
Q Consensus       234 ~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  312 (372)
                      .|++.++++.+. .+....+++.+++.                               +.+.+.+..|++.+|.+.+++.
T Consensus       336 ~~~~~~at~~~~~~~~~~~lg~~~~~~-------------------------------l~G~l~~~~G~~~~f~~~~~~~  384 (396)
T TIGR00882       336 FDVRLSATIYLIGFQFAKQLAMIFLST-------------------------------LAGNMYDSIGFQGAYLVLGCIV  384 (396)
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHH-------------------------------hHHHHHHhcccHHHHHHHHHHH
Confidence            788888887766 56778889999998                               8999999999988888888877


Q ss_pred             HHHHhhhh
Q psy17630        313 IIGTFFVY  320 (372)
Q Consensus       313 ~~~~~~~~  320 (372)
                      ++..+...
T Consensus       385 ~i~~~~~~  392 (396)
T TIGR00882       385 LLFTLISV  392 (396)
T ss_pred             HHHHHHHH
Confidence            76665543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.55  E-value=7.4e-14  Score=128.86  Aligned_cols=230  Identities=17%  Similarity=0.153  Sum_probs=127.4

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.|++.   +++.++..++..+++||+|+....+.+ ++.         .+++.+++.+   +..++.+..+...+++
T Consensus       149 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~---~~~~~~~~~~~~~~~~  212 (379)
T TIGR00881       149 WHWVFIVP---GIIAIIVSLICFLLLRDSPQSCGLPPA-EEM---------PNEEPDGDAE---KKEEELTKKQIFLQYV  212 (379)
T ss_pred             chhHHHHH---HHHHHHHHHHHheeeCCCccccccCcc-ccC---------cccccccccc---cccccccchHHHHHHH
Confidence            99999998   777777677777788887752110000 000         0000000000   0000001112234566


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  174 (372)
                      ++++..+...+.....     .........+.|.+.++ .|++..+.+.......++.+++.++.|+++||..+|+....
T Consensus       213 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~  287 (379)
T TIGR00881       213 LLNKVLWYISLGYVFV-----YVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL  287 (379)
T ss_pred             HhcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHH
Confidence            6666333222222211     11234455667776654 58888889999999999999999999999998643332222


Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (372)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (372)
                      ............... .....      .+...........+.. ..+..+..+.+..|.+|++.|+++.++.+....+++
T Consensus       288 ~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  359 (379)
T TIGR00881       288 AVFFMALIIVSLLVY-WLNPA------ANPLMDLICLFALGFL-VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGG  359 (379)
T ss_pred             HHHHHHHHHHHHHHH-hcCcc------hhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhh
Confidence            222111111111111 11000      0112222222222222 222233334677999999999999999999999999


Q ss_pred             HHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhh
Q psy17630        255 FVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAF  305 (372)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  305 (372)
                      .++|.                               +.+.+.+..||+..|
T Consensus       360 ~~~~~-------------------------------~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       360 ILAGL-------------------------------PLGYLADGFGWAGAF  379 (379)
T ss_pred             hhhhh-------------------------------hHHHHHHhhcccccC
Confidence            99998                               888899988887543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.54  E-value=3.3e-14  Score=131.14  Aligned_cols=165  Identities=13%  Similarity=0.072  Sum_probs=126.5

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ...+....|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+++....         
T Consensus        11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------   81 (379)
T TIGR00881        11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST---------   81 (379)
T ss_pred             HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh---------
Confidence            34556677888888899999999999999999999999999999999999999999988888877765541         


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                         +.+..++...+.+.+.+.. .+...+++.|.+|+++|+++.++.+....++..+++..                   
T Consensus        82 ---~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~-------------------  138 (379)
T TIGR00881        82 ---SLWVMAALWALNGIFQGMG-WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPL-------------------  138 (379)
T ss_pred             ---hHHHHHHHHHHHHhhcccc-CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHH-------------------
Confidence               1334444445554444433 34445788999999999999999998888888888830                   


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                 ....+.+..+|+..+++.+.+.++..++.+++.||++
T Consensus       139 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       139 -----------VLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             -----------HHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence                       3444556678998888888777777666666677654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.54  E-value=1.4e-13  Score=131.90  Aligned_cols=178  Identities=16%  Similarity=0.073  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHH
Q psy17630        106 IVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA  185 (372)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  185 (372)
                      +..+.+..+.............|.+.+++|.+..+.++....+.++...+.++.|+++||+|||++++.+.++..++.+.
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~   87 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA   87 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            33333444444444556777789999999989999999999999999999999999999999999999999999888887


Q ss_pred             HHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHHHHHHHHHHHHhhccc
Q psy17630        186 LGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTVRHR  264 (372)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  264 (372)
                      ++..            ++.+..++...+.+.+.+.. .+.....+.+.+ |+++|++++++......++..++|.     
T Consensus        88 ~~~a------------~~~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~-----  149 (495)
T PRK14995         88 AAFS------------PTASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPL-----  149 (495)
T ss_pred             HHHc------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            7654            12344455555555554432 222224444554 7889999999999999999999999     


Q ss_pred             cCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        265 FTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                                +.+.+.+..+||+.|++...++++..++..+++|+.+
T Consensus       150 --------------------------lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        150 --------------------------VGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             --------------------------HHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence                                      8888889999999999888777777666666677643

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.54  E-value=7e-14  Score=130.11  Aligned_cols=177  Identities=15%  Similarity=0.106  Sum_probs=131.5

Q ss_pred             HHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHH
Q psy17630        108 IVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALG  187 (372)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  187 (372)
                      +..........+........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.++.+.++..++.+.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~   86 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS   86 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            33344444444556667788999999999999999999999999999999999999999999999998888777776654


Q ss_pred             HHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCC
Q psy17630        188 YYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTP  267 (372)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (372)
                      ..            .+.+..+....+.+.+.+.. .+..+.++.|.+|+++|+++.++.+....++..++|.        
T Consensus        87 ~~------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~--------  145 (392)
T PRK10473         87 LA------------ETSSLFLAGRFLQGIGAGCC-YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPV--------  145 (392)
T ss_pred             Hh------------CcHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            33            11223333344443333322 2344578899999999999999999888888888887        


Q ss_pred             cccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        268 DVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                                             +.+.+.+..+|+..+++.+.++++..++.++..||+++
T Consensus       146 -----------------------i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        146 -----------------------LGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             -----------------------HHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence                                   66666677899988888888877777766666777643

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.54  E-value=5.7e-14  Score=134.43  Aligned_cols=172  Identities=15%  Similarity=0.083  Sum_probs=133.3

Q ss_pred             HHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHH
Q psy17630        112 LCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFY  191 (372)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~  191 (372)
                      ..+.............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.++.+.++..++.+++...  
T Consensus        10 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--   87 (485)
T TIGR00711        10 GTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--   87 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc--
Confidence            333333345567778899999999999999999999999999999999999999999999999988888877766443  


Q ss_pred             HhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccc
Q psy17630        192 LLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKG  271 (372)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (372)
                                .+.+..+....+.+.+.+. ..+....++.|.+|++.|+++.++......++..++|.            
T Consensus        88 ----------~~~~~l~~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~------------  144 (485)
T TIGR00711        88 ----------PNLELMIIFRVIQGFGGGP-LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT------------  144 (485)
T ss_pred             ----------CCHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhc------------
Confidence                      1233444444444444333 33455588899999999999999999999999999988            


Q ss_pred             cchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        272 LALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                         +.+.+.+..+|++.|++.+.++++..++..++.||++
T Consensus       145 -------------------~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       145 -------------------LGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDK  181 (485)
T ss_pred             -------------------cHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence                               8888888899999998887777776666655666643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.53  E-value=1.3e-13  Score=127.84  Aligned_cols=164  Identities=12%  Similarity=0.070  Sum_probs=127.0

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++.+..          
T Consensus        19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~----------   88 (382)
T PRK10091         19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS----------   88 (382)
T ss_pred             HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh----------
Confidence            3455667888889999999999999999999999999999999999999999999998888887766554          


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                        ++.+..++...+.+.+.+... +....++.|.+|+++|+.++++......++..+++.                    
T Consensus        89 --~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~--------------------  145 (382)
T PRK10091         89 --SSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIP--------------------  145 (382)
T ss_pred             --CcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhcc--------------------
Confidence              123444445555544444322 233366789999999999999988888888888887                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                 +.+.+.+..+||+.|.+.+.+.++..+..++..||.+
T Consensus       146 -----------l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        146 -----------LGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             -----------HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence                       7777777889999999888877776665555677754

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.53  E-value=6.2e-13  Score=123.67  Aligned_cols=185  Identities=11%  Similarity=-0.058  Sum_probs=112.6

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHH-HHHHHHHHHHHHHhhcCCc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAGRR  169 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~grr  169 (372)
                      ++++.+|+|..+......++....     ......+.+.+.++.|++..+.+.......+ ..+++.++.|++.||+|+|
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~  274 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMT-----AVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW  274 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHH-----HHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            356778877544333322222211     2233345666777889999998888777664 5667789999999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCc-chhhhHHHHHHH
Q psy17630        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-DVKGLALGVICI  248 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~  248 (372)
                      +.+..+..+.++..+..... ......     ...........+.....+....... ....+..++ +.+++.+++.+.
T Consensus       275 ~~l~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~  347 (390)
T TIGR02718       275 RTFILGVGLAGSLALLWFAQ-AAFWLA-----PGIAVAWSCSAFGSLITGITSVAIY-TAFMRFAGDGDQAGTDVTAVQS  347 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHcccC-----CcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCcccchHHHHHHHHH
Confidence            99887766553332222111 100000     0111111211222222232222222 344445554 788999999999


Q ss_pred             HHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhh
Q psy17630        249 LGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFF  318 (372)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  318 (372)
                      ...++..++|.                               +.+.+.+..|++..|...+++.+++.+.
T Consensus       348 ~~~lg~~~g~~-------------------------------~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       348 TRDLGELIASS-------------------------------IAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHH-------------------------------HHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            99999999999                               8899999889887887777666665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.53  E-value=5.8e-13  Score=123.50  Aligned_cols=152  Identities=11%  Similarity=0.013  Sum_probs=96.1

Q ss_pred             HhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccc
Q psy17630        125 FYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL  203 (372)
Q Consensus       125 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (372)
                      .+.+.++ +..|++..+.+.......++.+++.++.|++.||+|+|+.+..+..+.+++.+.+...   ..        .
T Consensus       220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~---~~--------~  288 (382)
T PRK10091        220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF---GG--------M  288 (382)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH---Hh--------h
Confidence            3444444 4468888899999999999999999999999999999999888777766665443221   00        1


Q ss_pred             cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcch
Q psy17630        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSL  283 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (372)
                      .+.......+.+.+......+.......+..+.+.++.+  ..+....++.+++|.                        
T Consensus       289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~------------------------  342 (382)
T PRK10091        289 KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAY------------------------  342 (382)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHH------------------------
Confidence            122222222333322222222222333444555555544  345667889999998                        


Q ss_pred             hhhhhhhhhHHHHHh-cccchhhHHHHHHHHHHHhhhh
Q psy17630        284 IEFVVVKTFDDVERA-FGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       284 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                             +.+.+.+. .+|+..+.+.++++.+......
T Consensus       343 -------~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        343 -------CGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             -------HhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence                   88888885 5787777777666655554433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.53  E-value=1.9e-13  Score=128.71  Aligned_cols=158  Identities=14%  Similarity=0.057  Sum_probs=120.6

Q ss_pred             HHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHH
Q psy17630        108 IVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALG  187 (372)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  187 (372)
                      .+.+.............+..|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++..
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~  101 (426)
T PRK12307         22 SAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG  101 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            33333344444455667777888888999999999999999999999999999999999999999999999888887765


Q ss_pred             HHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCC
Q psy17630        188 YYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTP  267 (372)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (372)
                      +..            +.+..++...+.+.+.+.... ....++.|.+|+++|+++.++......++..+++.        
T Consensus       102 ~~~------------~~~~l~~~r~l~G~g~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~--------  160 (426)
T PRK12307        102 LAS------------GVIMLTLSRFIVGMGMAGEYA-CASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY--------  160 (426)
T ss_pred             HHh------------HHHHHHHHHHHHHHHHhhHHH-HHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHH--------
Confidence            541            133444555555544443333 33477899999999999999998888888888887        


Q ss_pred             cccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHH
Q psy17630        268 DVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA  309 (372)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  309 (372)
                                             +.+.+.+..+|++.+++..
T Consensus       161 -----------------------l~~~l~~~~~w~~~f~i~~  179 (426)
T PRK12307        161 -----------------------FMPSFAEAYGWRAAFFVGL  179 (426)
T ss_pred             -----------------------HHHHHcccCCHHHHHHHHH
Confidence                                   7777777889998887643

>PRK10054 putative transporter; Provisional

Probab=99.53  E-value=2.5e-13  Score=126.37  Aligned_cols=164  Identities=14%  Similarity=0.077  Sum_probs=119.7

Q ss_pred             chHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630        119 GINVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE  197 (372)
Q Consensus       119 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (372)
                      +......+.|.++ ++.|++..+.++..+...+..+++.++.|+++||+|||+++..+.++..++.+.+.+..       
T Consensus        22 g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~-------   94 (395)
T PRK10054         22 GRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN-------   94 (395)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh-------
Confidence            3455566666665 45799999999999999999999999999999999999999988887777666554431       


Q ss_pred             cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhh
Q psy17630        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVI  277 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (372)
                           +.+..+....+.+...+ ...+....+..|..|+++|+++.++.+...+++..++|.                  
T Consensus        95 -----~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~------------------  150 (395)
T PRK10054         95 -----NVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPP------------------  150 (395)
T ss_pred             -----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence                 12223333333333322 223444577789999999999999999999999999988                  


Q ss_pred             hhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        278 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                   +.+.+.+ .+|+..|.+.+++.++..+...++.||++
T Consensus       151 -------------l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        151 -------------LGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             -------------HHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence                         7766654 68998998887777776555554556543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.53  E-value=1e-12  Score=122.89  Aligned_cols=196  Identities=14%  Similarity=0.059  Sum_probs=115.3

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.|++.   +++.++..+..++.+||+++..   ++ +             ..    .          ++...+++++
T Consensus       166 w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~-~-------------~~----~----------~~~~~~~~~~  211 (406)
T PRK15402        166 WRGMFVLF---AALAALSFFGLWRAMPETAGRV---GE-K-------------LS----L----------KELGRDYKLV  211 (406)
T ss_pred             ccHHHHHH---HHHHHHHHHHHHHhCCCCCccc---cc-c-------------cc----H----------HHHHHHHHHH
Confidence            99999998   6776665555666778875310   00 0             00    0          0011235567


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  174 (372)
                      ++++..+...+...+...     .......+.|.++. +.|.+..+.+.......++.+++.++.++++||++||+.+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~  286 (406)
T PRK15402        212 LKNRRFVAGALALGLVSL-----PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRM  286 (406)
T ss_pred             HcCcHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            777644332222111111     12233444566554 468888777877777778889999999999999999999888


Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (372)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (372)
                      +.++..++.+...........       ..+.......+.+.+.+....... .... ..+++.||+..++.+....++.
T Consensus       287 ~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~g~g~~~~~~~~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~  357 (406)
T PRK15402        287 GLWPMVAGLLLAALATVISSH-------AYLWLTAGLSLYAFGIGLANAGLY-RLTL-FSSDVSKGTVSAAMGMLSMLIF  357 (406)
T ss_pred             HHHHHHHHHHHHHHHHHcccc-------cHHHHHHHHHHHHHHHHHHhhhHH-HHHh-hhccccccHHHHHHHHHHHHHH
Confidence            877776666655443111111       122233334444444433322221 2222 2344789999999999998888


Q ss_pred             HHHHH
Q psy17630        255 FVVVK  259 (372)
Q Consensus       255 ~~~~~  259 (372)
                      .+++.
T Consensus       358 ~~g~~  362 (406)
T PRK15402        358 TVGIE  362 (406)
T ss_pred             HHHHH
Confidence            88888

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.52  E-value=3e-13  Score=128.93  Aligned_cols=159  Identities=14%  Similarity=-0.037  Sum_probs=113.9

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      .+....+.|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++.+..          
T Consensus        52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----------  121 (476)
T PLN00028         52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV----------  121 (476)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh----------
Confidence            4556667788888999999999998888899999999999999999999999988887777776655443          


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                        .+.+..++...+.+++.+. ..+.. .+++|.+|+++|++++++.+..+.+++.+++.                    
T Consensus       122 --~s~~~l~~~r~l~G~~~~~-~~~~~-~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~--------------------  177 (476)
T PLN00028        122 --SSATGFIAVRFFIGFSLAT-FVSCQ-YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQL--------------------  177 (476)
T ss_pred             --cCHHHHHHHHHHHHHHHHh-hHHHH-HHHHHhcChhheeHHHHHHHHHHHHHHHHHHH--------------------
Confidence              1123333334444443332 22332 56789999999999999998777777777665                    


Q ss_pred             hcchhhhhhhhhhHHH----HH-----hcccchhhHHHHHHHHHHHhhhheec
Q psy17630        280 LGSLIEFVVVKTFDDV----ER-----AFGTGVAFGTFAVYCIIGTFFVYFVV  323 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~----~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~  323 (372)
                                 +.+.+    .+     ..|||+.|++.++++++..+..+++.
T Consensus       178 -----------~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        178 -----------LMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             -----------HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence                       22222    11     25899999998888877666555433

>TIGR00897 2A0118 polyol permease family

Probab=99.52  E-value=1.8e-12  Score=120.99  Aligned_cols=183  Identities=14%  Similarity=0.115  Sum_probs=119.0

Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcch
Q psy17630         92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPL  171 (372)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  171 (372)
                      +++++++|..+...+..     +....+.+....+.|.+.++.|++..+.+.......++..++.+..|+++||+|||+.
T Consensus       215 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  289 (402)
T TIGR00897       215 ATILFTNPNVLLGGMVR-----IINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT  289 (402)
T ss_pred             HHHHHcChhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence            45667776433222221     1222234556778898888889988888888888899999999999999999999887


Q ss_pred             hh-HhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHH
Q psy17630        172 LL-ISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG  250 (372)
Q Consensus       172 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  250 (372)
                      +. .+.+...++.+.+........       .+.+.........+.+.+. ..+.. ....|..| ++|+++.|+.+...
T Consensus       290 ~~~~~~l~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~  359 (402)
T TIGR00897       290 VRWFGGVGCGIFTLALYYIPQHFG-------HSFAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSA  359 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHH
Confidence            64 233333333222221100000       0122223333333333332 23333 44567655 58999999999999


Q ss_pred             HHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        251 SLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                      .+++.++|.                               +.+.+.+..|++..+++.+++.++..+...
T Consensus       360 ~lg~~~gp~-------------------------------i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       360 GLSAFLAPA-------------------------------IAVLFIGFFGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHH-------------------------------HHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            999999999                               888999999998888888888777766554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.52  E-value=1.6e-13  Score=126.15  Aligned_cols=163  Identities=13%  Similarity=-0.037  Sum_probs=122.1

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      ..+....|.+.+++|.+..+.++..+...++..++.+..|+++||+|||+++..+......+.+.....           
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----------   76 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP-----------   76 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh-----------
Confidence            456677888899999999999999999999999999999999999999987665444333332211110           


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (372)
                       .+.+..++...+.+.+.+. . .......+|.+|+++|++++++......+|..+++.                     
T Consensus        77 -~~~~~l~~~R~l~G~g~~~-~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~---------------------  132 (368)
T TIGR00903        77 -FNYEWLLACQLLAALGQPF-L-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALA---------------------  132 (368)
T ss_pred             -ccHHHHHHHHHHHHhHhHH-H-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence             0133445555555555442 2 222345589999999999999999999999999988                     


Q ss_pred             cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                                +...+.+..|||..|.+.++++++..++.++++||+++
T Consensus       133 ----------~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~  170 (368)
T TIGR00903       133 ----------AGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPF  170 (368)
T ss_pred             ----------HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence                      77778888999999998888888877777777888643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.52  E-value=2.4e-13  Score=127.30  Aligned_cols=165  Identities=13%  Similarity=0.096  Sum_probs=126.5

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ......-+|.+.++++.+..+.++..+...++..++.++.|+++||+|||++++.+..+.+++.+.+...          
T Consensus        32 ~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----------  101 (413)
T PRK15403         32 TDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT----------  101 (413)
T ss_pred             HHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc----------
Confidence            3445555666777889888999999999999999999999999999999999999988888777765543          


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                        .+.+..++...+.+.+.+. ..+..+.++.|.+|+++|++++++.+....++..++|.                    
T Consensus       102 --~~~~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------------------  158 (413)
T PRK15403        102 --TSMTQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPL--------------------  158 (413)
T ss_pred             --CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence              1233444555555444432 23344577889999999999999999998899988887                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                                 +.+.+.+..||++.|++.+++.++..+..++.+||+++
T Consensus       159 -----------lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        159 -----------SGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             -----------HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence                       77777777899999998888877776665556788643

>PRK12382 putative transporter; Provisional

Probab=99.51  E-value=1.7e-12  Score=120.81  Aligned_cols=155  Identities=17%  Similarity=0.156  Sum_probs=110.6

Q ss_pred             HHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630        122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (372)
Q Consensus       122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (372)
                      ....+.+.++++.+.+  +.+.......++.+++.++.|++.||+|||+.+..+..+.+++.+.+...     +      
T Consensus       234 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----~------  300 (392)
T PRK12382        234 VIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-----P------  300 (392)
T ss_pred             HHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----c------
Confidence            3445666666666654  34555666777788999999999999999999888877777665544322     1      


Q ss_pred             cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG  281 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (372)
                       +.+.......+.+.+.+... +.......|.+|++.|+++.++.+....++..++|.                      
T Consensus       301 -~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~----------------------  356 (392)
T PRK12382        301 -TAWVALAGAALTGAGCSLIF-PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGP----------------------  356 (392)
T ss_pred             -cHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence             12233333344444433322 233356688899999999999999999999999999                      


Q ss_pred             chhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhhee
Q psy17630        282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFV  322 (372)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  322 (372)
                               +.+.+.+..||+..+.+.+++.+++.++.+..
T Consensus       357 ---------~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        357 ---------LAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             ---------HHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence                     88999999999999988888777777665533

>PRK10504 putative transporter; Provisional

Probab=99.51  E-value=7.6e-13  Score=126.25  Aligned_cols=151  Identities=11%  Similarity=0.027  Sum_probs=100.0

Q ss_pred             HHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchh
Q psy17630         94 EIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLL  172 (372)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  172 (372)
                      ++++|+.++......++..     .+.....++.|++++. .|.++.+.++......++..++.++.+++.||+|||+++
T Consensus       256 ~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~  330 (471)
T PRK10504        256 KLFRTRTFSLGLAGSFAGR-----IGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVL  330 (471)
T ss_pred             HHhcccchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            4677764433322222221     1234455677777774 688888888888888888888999999999999999999


Q ss_pred             hHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHH
Q psy17630        173 LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL  252 (372)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  252 (372)
                      ..+..+.++..+++...   .. .     ...+.........+.+.+....+.. .+..+..|++.|+.++++.++...+
T Consensus       331 ~~~~~~~~~~~~~~~~~---~~-~-----~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~  400 (471)
T PRK10504        331 VATTLGLALVSLLFMLV---AL-L-----GWYYLLPFVLFLQGMVNSTRFSSMN-TLTLKDLPDNLASSGNSLLSMIMQL  400 (471)
T ss_pred             HHHHHHHHHHHHHHHhc---cc-c-----ccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHhccchHHHHHHHHHH
Confidence            88877777665554332   10 0     1112222223333334443333333 6667889999999999999999999


Q ss_pred             HHHHHHH
Q psy17630        253 IEFVVVK  259 (372)
Q Consensus       253 ~~~~~~~  259 (372)
                      +..+++.
T Consensus       401 g~~ig~~  407 (471)
T PRK10504        401 SMSIGVT  407 (471)
T ss_pred             HHHHHHH
Confidence            9988887

>KOG1330|consensus

Probab=99.51  E-value=2.7e-14  Score=128.60  Aligned_cols=174  Identities=15%  Similarity=0.105  Sum_probs=135.3

Q ss_pred             HHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHH
Q psy17630        112 LCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFY  191 (372)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~  191 (372)
                      ....+...-+.+....+.+-+.+|.+....++++....++..+.++++|+++||+.||+++.+|..+..++.+..++.. 
T Consensus        41 vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~-  119 (493)
T KOG1330|consen   41 VNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN-  119 (493)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH-
Confidence            3333333345555666666667799999999999999999999999999999999999999999999999988887762 


Q ss_pred             HhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccc
Q psy17630        192 LLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKG  271 (372)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (372)
                                 ..|.+++...+.+++-+ .+.++...+++|.+|.++|++.+++.++...+|..++-.            
T Consensus       120 -----------~Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~v------------  175 (493)
T KOG1330|consen  120 -----------HFWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYV------------  175 (493)
T ss_pred             -----------HHHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEE------------
Confidence                       24566666666666655 455566689999999999999999999888777655443            


Q ss_pred             cchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhheeccCCCCC
Q psy17630        272 LALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKNK  329 (372)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  329 (372)
                                         ....+....+ ||+.|...+++.++..++..++.+|.+++
T Consensus       176 -------------------vgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg  215 (493)
T KOG1330|consen  176 -------------------VGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG  215 (493)
T ss_pred             -------------------eeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence                               2223333333 99999999999999999888888887654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.51  E-value=2.6e-13  Score=128.18  Aligned_cols=163  Identities=11%  Similarity=0.044  Sum_probs=117.7

Q ss_pred             HHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccc
Q psy17630        123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG  202 (372)
Q Consensus       123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (372)
                      .....|.+. +.|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.+........  .      .
T Consensus        46 ~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--~------~  116 (438)
T TIGR00712        46 FALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA--T------S  116 (438)
T ss_pred             HHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc--c------c
Confidence            344556554 469999999999999999999999999999999999999998888887776665432100  0      0


Q ss_pred             ccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcc
Q psy17630        203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGS  282 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (372)
                      +.+...+...+.+.+.+....+.. ..+.|.+|+++|++++++.+....+++.+++.                       
T Consensus       117 ~~~~l~~~~~l~g~~~g~~~~~~~-~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~-----------------------  172 (438)
T TIGR00712       117 SIAIMFVLLFLNGWFQGMGWPPCG-RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPL-----------------------  172 (438)
T ss_pred             hHHHHHHHHHHHHHHhhcchHHHH-HHHHHhcCcccchhHHHHHHHHHHhHhHHHHH-----------------------
Confidence            122233334444444444444333 67789999999999999999988888888877                       


Q ss_pred             hhhhhhhhhhHHHHH-hcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        283 LIEFVVVKTFDDVER-AFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       283 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                              +.....+ ..+||..|++.++++++..+..++++||+
T Consensus       173 --------l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       173 --------LVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             --------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                    5544333 46899999988888877766666667764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.50  E-value=5.7e-13  Score=124.63  Aligned_cols=165  Identities=13%  Similarity=0.024  Sum_probs=123.4

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ...+....|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+..++.+.....          
T Consensus        29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------   98 (406)
T PRK15402         29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA----------   98 (406)
T ss_pred             hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------
Confidence            3445556677788889999999999999999999999999999999999999999888887777665443          


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                        ++.+..+....+.+.+.+. ..+..+.++.|.+|++.|....++......++..++|.                    
T Consensus        99 --~~~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------------------  155 (406)
T PRK15402         99 --QSIEQFTLLRFLQGIGLCF-IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPL--------------------  155 (406)
T ss_pred             --ccHHHHHHHHHHHHhHhhh-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence              0123333333443333332 23344577789999999999888888777778888887                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                                 +.+.+.+..+|++.+++.++++++..+..++..||+++
T Consensus       156 -----------i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        156 -----------VGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             -----------HHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence                       77777788899999988888877776665556777643

>PRK10504 putative transporter; Provisional

Probab=99.50  E-value=5.7e-13  Score=127.12  Aligned_cols=166  Identities=10%  Similarity=-0.015  Sum_probs=126.8

Q ss_pred             hhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcc
Q psy17630        117 FSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD  196 (372)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (372)
                      ...........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||++++.+.++..++.+.+...       
T Consensus        23 ~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------   95 (471)
T PRK10504         23 SLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-------   95 (471)
T ss_pred             HHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-------
Confidence            3334566778899999999999999999888899999999999999999999999998877777766654432       


Q ss_pred             ccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhh
Q psy17630        197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGV  276 (372)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (372)
                           .+.+..++...+.+.+.+.. .+....++.|.+|++.|+++.++......++..++|.                 
T Consensus        96 -----~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-----------------  152 (471)
T PRK10504         96 -----GTLNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPA-----------------  152 (471)
T ss_pred             -----CCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhH-----------------
Confidence                 11233444455554444432 3344577889999999999999999999999999998                 


Q ss_pred             hhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        277 ICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                                    +.+.+.+..+|++.|.+...++.+..+......|+.
T Consensus       153 --------------~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        153 --------------LGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             --------------HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                          888888889999999887777666666655455543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.50  E-value=1.1e-12  Score=122.66  Aligned_cols=163  Identities=18%  Similarity=0.165  Sum_probs=120.5

Q ss_pred             chHHHHHhhHHHHHhcCCCCCCh-----hhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHh
Q psy17630        119 GINVVIFYLKRILIATNSKIISP-----NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLL  193 (372)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
                      +......+.|.+.++.|.+..+.     +...+...+...++.++.|+++||+|||+.+..+.+..+++.+++...    
T Consensus        29 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----  104 (408)
T PRK09874         29 AFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA----  104 (408)
T ss_pred             HHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH----
Confidence            34556677888888888776553     677788888999999999999999999999998887777766654432    


Q ss_pred             hccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccc
Q psy17630        194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLA  273 (372)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (372)
                              .+.+..++...+.+.+.  +..+....++.|.+|+++|+.+.++......++..++|.              
T Consensus       105 --------~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------  160 (408)
T PRK09874        105 --------QNIWQFLILRALLGLLG--GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPL--------------  160 (408)
T ss_pred             --------hhHHHHHHHHHHHHHhh--hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHH--------------
Confidence                    01233344444443332  223333356788899999999999999888888888888              


Q ss_pred             hhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        274 LGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                                       +.+.+.+..+|+..+++.+++.++..+...++.||+
T Consensus       161 -----------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        161 -----------------AGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             -----------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                             777788888999999888887777766665566654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.50  E-value=2.8e-13  Score=123.75  Aligned_cols=163  Identities=18%  Similarity=0.152  Sum_probs=124.4

Q ss_pred             hHHHHHhhH-HHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLK-RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      ........| .+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++..+.     .   
T Consensus        12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~---   83 (352)
T PF07690_consen   12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----S---   83 (352)
T ss_dssp             HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----C---
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----h---
Confidence            344556666 6667789999999999999999999999999999999999999999988888884444322     1   


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC  278 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (372)
                          +.+..++...+.+.+.+.. .+....++.|.+|+++|++++++......++..++|.                   
T Consensus        84 ----~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-------------------  139 (352)
T PF07690_consen   84 ----NFWLLLIARFLLGIGSGFF-SPASNALIADWFPPEERGRAFGILSAGFSLGSILGPL-------------------  139 (352)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred             ----hHHHHhhhccccccccccc-cccccccccccchhhhhhhccccccchhhhhhhcccc-------------------
Confidence                1334455555555554433 3444588899999999999999999999999999998                   


Q ss_pred             hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                                  +.+.+.+..+|+..+++.++++++..++...+.+++
T Consensus       140 ------------l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~  175 (352)
T PF07690_consen  140 ------------LGGFLISYFGWRWAFLISAILSLIAAILFILFLPEP  175 (352)
T ss_dssp             ------------HHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred             ------------hhhhhhhccccccccccccchhhhhhhhHhhhhhhc
Confidence                        777777788899999999998888877544455443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.49  E-value=1.3e-12  Score=121.03  Aligned_cols=195  Identities=14%  Similarity=0.057  Sum_probs=118.1

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.|++.   +++.++..++.++.+||+++.   +++               .+              .++...++++.
T Consensus       158 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~---------------~~--------------~~~~~~~~~~~  202 (385)
T TIGR00710       158 WHAIFAFL---SLAGILLSALIFFILPETLPY---EAR---------------IQ--------------ISTYFETFLLL  202 (385)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHhCCCCCCC---ccc---------------CC--------------HHHHHHHHHHH
Confidence            99999998   677776666666677886531   000               00              00111235566


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  174 (372)
                      +++++.+...+......     ........+.|.+.+ +.|.++.+.+.......++.+++.++.|++.||+|||+.+..
T Consensus       203 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~  277 (385)
T TIGR00710       203 LKSKMFWGYALIYGASF-----GGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRM  277 (385)
T ss_pred             HcCchhHHHHHHHHHHH-----HHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            77764443332221111     123344556676665 568888888999999999999999999999999999999888


Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (372)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (372)
                      +..+..++.+.+.........       ............+.+.+.... ....+..|..| +.|+++.++.+.....++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g  348 (385)
T TIGR00710       278 GLILFAVSAVLLEITAILGLG-------SWAMIIGPMMFVGIGNSMISS-IAMAYALEDFP-HVAGTASALFGTLRLVLG  348 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCc-ccchHHHHHHHHHHHHHH
Confidence            877766665554332111100       112222223333333333322 33356677777 578999999888877766


Q ss_pred             HHHHH
Q psy17630        255 FVVVK  259 (372)
Q Consensus       255 ~~~~~  259 (372)
                      .+.+.
T Consensus       349 ~i~~~  353 (385)
T TIGR00710       349 AIVGY  353 (385)
T ss_pred             HHHHH
Confidence            66665

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.49  E-value=4.4e-13  Score=126.58  Aligned_cols=193  Identities=12%  Similarity=0.011  Sum_probs=113.4

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.+.+.   +++.++..++.++.+||.++.     +.++         ++                ++...++.++++
T Consensus       172 ~~~~~~i~---~~l~~~~~~~~~~~~~e~~~~-----~~~~---------~~----------------~~~~~~~~~~~l  218 (437)
T TIGR00792       172 WFMFALVL---ALIGVVSLIICFFGTKERYSE-----IPKN---------IE----------------KKLSLKQIFKAL  218 (437)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHcCCEecCCC-----CCcc---------cc----------------cCCCHHHHHHHH
Confidence            99999998   788877666777788886520     0000         00                000112235666


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  174 (372)
                      ++++.++...+..++....     ......+.+.+.+.. + +....+.......++.+++.+++++++||+|||+.+..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~  292 (437)
T TIGR00792       219 FKNDQLLILCLAYLFYNLA-----FNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAG  292 (437)
T ss_pred             hCCHHHHHHHHHHHHHHHH-----HHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            7776444332222222211     222222334333332 3 34455666677788899999999999999999999988


Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCC-------cchhhhHHHHHH
Q psy17630        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-------PDVKGLALGVIC  247 (372)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~  247 (372)
                      +.++.+++.+.+.+.   . .       +.+...+...+.+++.+.. .+..+++++|..+       .+.+|...++.+
T Consensus       293 ~~~~~~~~~~~~~~~---~-~-------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  360 (437)
T TIGR00792       293 GILLMVLGYLIFFFA---G-S-------NLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRT  360 (437)
T ss_pred             HHHHHHHHHHHHHHc---c-h-------hHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHH
Confidence            877777665554322   0 1       1223333333333343333 3344567777754       455688999999


Q ss_pred             HHHHHHHHHHHH
Q psy17630        248 ILGSLIEFVVVK  259 (372)
Q Consensus       248 ~~~~~~~~~~~~  259 (372)
                      ....++..+++.
T Consensus       361 ~~~~~g~~lg~~  372 (437)
T TIGR00792       361 FVRKLGQALAGF  372 (437)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888887

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.49  E-value=2.1e-12  Score=118.56  Aligned_cols=123  Identities=10%  Similarity=-0.018  Sum_probs=92.2

Q ss_pred             HhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccc
Q psy17630        125 FYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL  203 (372)
Q Consensus       125 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (372)
                      .+.|.+.++ .|.+..+.+.......++.+++.++.+++.||++||+.+..+..+.+++........           .+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~  300 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP-----------PN  300 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc-----------hh
Confidence            567777776 588888889999999999999999999999999999988877666666555443320           01


Q ss_pred             cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .+...+...+.+.+.+.. .+....++.|..|++.|+++.++.+....++..++|.
T Consensus       301 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~  355 (365)
T TIGR00900       301 FPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLI  355 (365)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233334444444444433 3344478899999999999999999999999999998

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.48  E-value=5.2e-12  Score=117.54  Aligned_cols=149  Identities=9%  Similarity=0.008  Sum_probs=93.9

Q ss_pred             HhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccccc
Q psy17630        125 FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLG  204 (372)
Q Consensus       125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (372)
                      +..|.+.++.|++..+.+......+++.+++.++.+++.||.+| +.++.+..+..+..+.+...   .        .+.
T Consensus       238 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~---~--------~~~  305 (394)
T PRK10213        238 YIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLW---G--------SDK  305 (394)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHH---h--------hhH
Confidence            33477777789898888998999999999999999999999644 44333333333322222111   0        012


Q ss_pred             HHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchh
Q psy17630        205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLI  284 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (372)
                      +.......+.+.+++....... +++.+..| +.++...+.......++..+++.                         
T Consensus       306 ~~~~~~~~l~G~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~-------------------------  358 (394)
T PRK10213        306 IVATGVAIIWGLTFALVPVGWS-TWITRSLA-DQAEKAGSIQVAVIQLANTCGAA-------------------------  358 (394)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHH-HHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence            3334444444444443333333 45566666 44556666666777888888998                         


Q ss_pred             hhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhh
Q psy17630        285 EFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFF  318 (372)
Q Consensus       285 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  318 (372)
                            +.+.+.+..|++..+...+.+.++..+.
T Consensus       359 ------l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        359 ------IGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             ------HHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence                  8888989888877776665555444433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.48  E-value=1.1e-12  Score=125.50  Aligned_cols=168  Identities=14%  Similarity=0.020  Sum_probs=108.5

Q ss_pred             CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHH
Q psy17630        135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY  214 (372)
Q Consensus       135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (372)
                      +.+..+.++..+...++..++.+++|+++||+|||++++.+.++..++.+..++...................++...+.
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~  130 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG  130 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence            66778889999999999999999999999999999999999888877766654421110000000000112333444555


Q ss_pred             HHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHH
Q psy17630        215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDD  294 (372)
Q Consensus       215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (372)
                      +.+.+.... ...++++|.+|+++|+.++++......+|..+++..                    ++....   .....
T Consensus       131 G~~~g~~~~-~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~--------------------~~~~~~---~~~~~  186 (479)
T PRK10077        131 GIGVGLASM-LSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFV--------------------NYFIAR---SGDAS  186 (479)
T ss_pred             hhhHhHHhh-HHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHH--------------------HHHHhc---cCccc
Confidence            555444333 444889999999999999999887777777666540                    000000   00011


Q ss_pred             HHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        295 VERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       295 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                      ..+..+||+.|++.++..++..+. .+++||+.
T Consensus       187 ~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~  218 (479)
T PRK10077        187 WLNTDGWRYMFASEAIPALLFLML-LYFVPETP  218 (479)
T ss_pred             ccccCChHHHHHHHHHHHHHHHHH-HHcCCCCc
Confidence            224568999998877766665544 45688874

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.47  E-value=2.7e-12  Score=119.09  Aligned_cols=175  Identities=13%  Similarity=0.016  Sum_probs=113.5

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP  170 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  170 (372)
                      ++++++|+|..+......++....     ......+.|.+.++.|.+..+.+.......+..++..++.+++.||+|+|+
T Consensus       197 ~~~~i~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~  271 (382)
T PRK11128        197 AWKALLKEPTVWRFLLCVSLLQGS-----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD  271 (382)
T ss_pred             hHHHHHcChhHHHHHHHHHHHHHH-----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            467788887554433333322222     223344556666778888888898888888899999999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH-
Q psy17630        171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL-  249 (372)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-  249 (372)
                      .+..+.+..++..+.....            ++.+..++...+.+.+.+....... .+..+. +++++++..++.+.. 
T Consensus       272 ~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~  337 (382)
T PRK11128        272 LLLLSAICGVVRWGLMGST------------TALPWLIVIQILHCGTFTVCHLAAM-RYIAAR-PGSEVIRLQALYSALA  337 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHC-CHhhhHHHHHHHHHHH
Confidence            9888887777765544322            1234444445555555444333333 555665 555668888877633 


Q ss_pred             HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHH
Q psy17630        250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT  316 (372)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  316 (372)
                      ..++..++|.                               +.+.+.+..|+ ..++..+++.+++.
T Consensus       338 ~~~g~~ig~~-------------------------------i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        338 MGGSIAIMTV-------------------------------LSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHH-------------------------------HHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            4556678888                               88888888887 45555555555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.47  E-value=2.2e-12  Score=120.49  Aligned_cols=182  Identities=12%  Similarity=0.030  Sum_probs=103.4

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHH-HHHHHHHHHHHHHHhhcCCc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVG-FIQVIMTFFSSLLVDKAGRR  169 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~grr  169 (372)
                      ++++++++|..+......++.......    ......+.+.++.|++..+.++.....+ ++.+++.+++|++.||+|||
T Consensus       201 ~~~~l~~~~~~~~~l~~~~l~~~~~~~----~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~  276 (402)
T PRK11902        201 PLRDFFSRRGAWALLLLIVLYKLGDAF----AGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY  276 (402)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHhHHHH----HHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            466788887544433333222222111    1122334445557888888888775544 56889999999999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHH----HHHhhcccccccceeeeccCCCcchhhhHHHH
Q psy17630        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI----YIIVFSVGFGPIPGVMMGELFTPDVKGLALGV  245 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  245 (372)
                      +.+..+..+..+..+.+....... +       +.+.......+    .+...+. .......++.+.+|.+.++    +
T Consensus       277 ~~l~~~~~~~~l~~l~~~~~~~~~-~-------~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~----~  343 (402)
T PRK11902        277 RSLMLFGVLQAVSNLGYWVLAVTP-K-------HLWTMALAIGIENLCGGMGTAA-FVALLMALCNRSFSATQYA----L  343 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-C-------cHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCcHHHHH----H
Confidence            988776666555443332211110 1       12222222221    1112222 2223336667777766554    3


Q ss_pred             HHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        246 ICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                      .+....++...++.                               +.+.+.+..||+..|.+.+.+++++.++.+
T Consensus       344 ~~~~~~l~~~~~~~-------------------------------~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        344 LSALASVGRVYVGP-------------------------------TSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHH-------------------------------HHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            33344455555555                               777788999998888888877777765543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.47  E-value=1.2e-12  Score=121.84  Aligned_cols=164  Identities=15%  Similarity=0.074  Sum_probs=120.7

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      .......|.+.++.|.+..+.++......++..++.++.|+++||+|||+.+..+.++..++.+.....     .     
T Consensus        25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~-----   94 (394)
T PRK11652         25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-----H-----   94 (394)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----c-----
Confidence            344455778888899999999999999999999999999999999999999999888777776654332     1     


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (372)
                        +.+..++...+.+.+.+.. .+....+..|.++.+.|+.+.+..+....++..++|.                     
T Consensus        95 --~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------------------  150 (394)
T PRK11652         95 --SLTVLIAASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPL---------------------  150 (394)
T ss_pred             --cHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence              1233334444443333322 2333356688888888999999888888888888887                     


Q ss_pred             cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                                +.+.+.+..+|+..+++.+++.++..+...++.||+++
T Consensus       151 ----------i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        151 ----------IGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             ----------HHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence                      77777778899999988877766655555556777543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.47  E-value=9.4e-13  Score=120.89  Aligned_cols=162  Identities=15%  Similarity=0.048  Sum_probs=122.0

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ........|.+..+.+.+..+.++..+...++..++.++.|+++||+|||++++.+.++..++.++.........     
T Consensus        15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-----   89 (365)
T TIGR00900        15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG-----   89 (365)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC-----
Confidence            344556667777888888889999999999999999999999999999999999988887777666544421110     


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                        .+.+..++...+.+.+.+.. .+...+++.|.+|+++|++.+++.+....++..++|.                    
T Consensus        90 --~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~--------------------  146 (365)
T TIGR00900        90 --LNIWQVYVLAGILAIAQAFF-TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPG--------------------  146 (365)
T ss_pred             --CcHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHH--------------------
Confidence              12344444455554444433 3444488899999999999999999999999999998                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                                 +.+.+.+..+|+..+++.++..++..+..+
T Consensus       147 -----------l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       147 -----------IGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             -----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence                       888888888999888877766655544433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.47  E-value=4.3e-12  Score=115.65  Aligned_cols=157  Identities=20%  Similarity=0.213  Sum_probs=124.7

Q ss_pred             hHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc-hhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630        120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP-LLLISDICMAICIGALGYYFYLLKLDE  197 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (372)
                      ......+.|.+.++. |.+..+.+.......++..++.++.+++.||+|||+ .+..+..+..++.+.....        
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------  262 (352)
T cd06174         191 YYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA--------  262 (352)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--------
Confidence            455667777777776 888889999999999999999999999999999999 8888888887777765443        


Q ss_pred             cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhh
Q psy17630        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVI  277 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (372)
                          .+.+.......+.+.+.+.. .+....+..|..|+++|++.+++.+....++..+++.                  
T Consensus       263 ----~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------------  319 (352)
T cd06174         263 ----PSLALLLVALLLLGFGLGFA-FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPL------------------  319 (352)
T ss_pred             ----ccHHHHHHHHHHHHHHHhcc-chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence                01233344444444444443 3455588899999999999999999999999999999                  


Q ss_pred             hhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        278 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                                   +.+.+.+..+|+..+.+.+++.+++.+..+
T Consensus       320 -------------i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         320 -------------LAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             -------------HHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence                         888888888999899888888888776654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.47  E-value=2.5e-12  Score=123.63  Aligned_cols=116  Identities=12%  Similarity=0.027  Sum_probs=85.3

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHH
Q psy17630        137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII  216 (372)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (372)
                      +..+.++......++.+++.+++|+++||+|||+.+.++.++..++.++.+....  ...    ..+.+..++...+.++
T Consensus        54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~--~~~----~~~~~~~~~~r~l~G~  127 (502)
T TIGR00887        54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG--SSP----KSVMATLCFWRFWLGV  127 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC--ccc----chHHHHHHHHHHHHHH
Confidence            3445678888999999999999999999999999999988888887776554310  000    0012344555555555


Q ss_pred             hhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +.+.... ....+++|.+|++.|++++++.+....+|..+++.
T Consensus       128 ~~g~~~~-~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~  169 (502)
T TIGR00887       128 GIGGDYP-LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI  169 (502)
T ss_pred             HHhhhhH-HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444 44489999999999999999999888888877765

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.47  E-value=1.6e-12  Score=124.73  Aligned_cols=130  Identities=9%  Similarity=-0.094  Sum_probs=95.0

Q ss_pred             hHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      .....++.|.++++ .|+++.+.+....+..++..++.++.|++.||+|||+.+..+.++.+++.+.+...   ...   
T Consensus       275 ~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~---~~~---  348 (495)
T PRK14995        275 LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT---DFS---  348 (495)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh---cCC---
Confidence            34556677777776 49999999999999999999999999999999999998888877776665544322   111   


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                         ...+.......+.+.+.+....+.. ..+.+..|+++++.+.++.+....+|+.+++.
T Consensus       349 ---~~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~a  405 (495)
T PRK14995        349 ---TQQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAGAIETMAYELGAGLGIA  405 (495)
T ss_pred             ---CchHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHHHHHHHHHHHHHHHHHH
Confidence               1123333444455555554443343 55677889999999999999999999888887

>PRK03699 putative transporter; Provisional

Probab=99.47  E-value=1.5e-12  Score=121.34  Aligned_cols=156  Identities=10%  Similarity=0.045  Sum_probs=118.0

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ........|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+.++..++.++..+.          
T Consensus        23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~----------   92 (394)
T PRK03699         23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS----------   92 (394)
T ss_pred             HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----------
Confidence            4566677888888999999999999999999999999999999999999999998888877777665443          


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                        ++.+..++...+.+.+.+.... ....++.|.+|++.|+.+.+..+....+++.++|.                    
T Consensus        93 --~~~~~~~~~~~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~--------------------  149 (394)
T PRK03699         93 --HSLALFSIAMFVLGVVSGITMS-IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPI--------------------  149 (394)
T ss_pred             --chHHHHHHHHHHHHHhhHhhcc-chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence              1123344444555554444433 33367799999999999998888777788888887                    


Q ss_pred             hcchhhhhhhhhhHHHHH-hcccchhhHHHHHHHHHHHhhh
Q psy17630        280 LGSLIEFVVVKTFDDVER-AFGTGVAFGTFAVYCIIGTFFV  319 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~  319 (372)
                                 ..+.+.. ..+||+.|.+.+++.++..++.
T Consensus       150 -----------~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        150 -----------IAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             -----------HHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence                       6665554 5689999988777766655443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.46  E-value=3.5e-12  Score=114.09  Aligned_cols=227  Identities=19%  Similarity=0.248  Sum_probs=155.8

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||....+-   .+..++..+..++.+.|.|......+                                 +.....++.+
T Consensus       171 w~~~~~i~---~~~l~v~~v~~~~~~~d~p~~r~~~~---------------------------------~~~~~~~~~v  214 (417)
T COG2223         171 WRNVAGIY---VVALAIAAVLAWLGMNDVPEHRASVK---------------------------------PQLPAQLKAV  214 (417)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHhCCChhhhcccc---------------------------------ccchhHHHHH
Confidence            88888887   55555657777788888774210000                                 0000235566


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  174 (372)
                      ++++..|...     +.....+.++..+..++|.++++ +|.+..+++.......+.+.+..+.+|+++||+|.++++.+
T Consensus       215 ~~~~~~W~ls-----llY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~  289 (417)
T COG2223         215 FSNKDTWLLS-----LLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLA  289 (417)
T ss_pred             hcCcchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHH
Confidence            6665333222     22333333456777888887766 49999999999999999999999999999999999999998


Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (372)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (372)
                      ....++++..+.........     ...+....+..+.......+.+.+.+. .+++..+|. +-|...|+....+.+|+
T Consensus       290 ~f~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~l~~~~G~GnGsvf-k~Ip~if~~-~~G~v~G~vga~G~lGG  362 (417)
T COG2223         290 VFVGMALAAALLSLFLTGFG-----HGGSFVVFVAVFLALFVFAGLGNGSVF-KMIPVIFPK-ETGAVTGIVGAIGGLGG  362 (417)
T ss_pred             HHHHHHHHHHHHHccccccc-----cCcchHHHHHHHHHHHHHhccCcchhe-eechHHHHh-hhhHHHHHHHHhccccc
Confidence            88888877776544311110     012233444444555556666666554 788888875 45788899999999999


Q ss_pred             HHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhhe
Q psy17630        255 FVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYF  321 (372)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  321 (372)
                      +..|.                               .++...+..| +...|+++..+.+++.++.+.
T Consensus       363 f~lp~-------------------------------~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         363 FFLPL-------------------------------AFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             cchhH-------------------------------HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            98888                               8888888888 666888888888888776653

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.46  E-value=1.8e-12  Score=121.65  Aligned_cols=167  Identities=13%  Similarity=0.021  Sum_probs=119.1

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ........|.+.++.+.+..+.++......++..+++++.|+++||+|||+.+..+..+.+++.+.+........+    
T Consensus        33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~----  108 (417)
T PRK10489         33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEP----  108 (417)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCC----
Confidence            3455667788888887788899999999999999999999999999999999988877776665554322111111    


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                         +.+...+...+.+.+.+....+. ..++.|..|+++|+++.++.+....++..++|.                    
T Consensus       109 ---~~~~l~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~--------------------  164 (417)
T PRK10489        109 ---SLLAIYLLGLWDGFFGSLGVTAL-LAATPALVGRENLMQAGAITMLTVRLGSVISPA--------------------  164 (417)
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHH--------------------
Confidence               12333333334344333333333 367889999999999999998888999999988                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                                 +.+.+.+..+|++.+.+.++..++..+.. +.+|++
T Consensus       165 -----------l~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~  199 (417)
T PRK10489        165 -----------LGGLLIAAGGVAWNYGLAAAGTFITLLPL-LRLPAL  199 (417)
T ss_pred             -----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence                       77777787888888877666655555443 355654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.45  E-value=4.8e-13  Score=127.40  Aligned_cols=166  Identities=13%  Similarity=-0.083  Sum_probs=120.8

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      ..+....|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.++..+.++.......+     
T Consensus        46 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-----  120 (467)
T PRK09556         46 KNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSV-----  120 (467)
T ss_pred             cChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccc-----
Confidence            344566788889999999999999999999999999999999999999999998888887777665543211111     


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (372)
                        +.+..++...+.+.+.+.... ....+++|.+|+++|++++++......+|+.+++.                     
T Consensus       121 --~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~---------------------  176 (467)
T PRK09556        121 --SLGLMIALWALSGFFQSTGGP-CSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGG---------------------  176 (467)
T ss_pred             --hHHHHHHHHHHHHHHHhccch-HHHHHHHHHcCccceeeeEEeeecccchhhhHHHH---------------------
Confidence              234445555555555555444 34478899999999999999998888888888876                     


Q ss_pred             cchhhhhhhhhhHHHHHhc---ccchhhHHHHHHHHHHHhhhheeccC
Q psy17630        281 GSLIEFVVVKTFDDVERAF---GTGVAFGTFAVYCIIGTFFVYFVVPE  325 (372)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~e  325 (372)
                                +.....+..   +|+..|.+.+++.++..++.+++.++
T Consensus       177 ----------i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~  214 (467)
T PRK09556        177 ----------VALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD  214 (467)
T ss_pred             ----------HHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence                      444444332   57777777777766665555544443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.45  E-value=6.6e-13  Score=126.43  Aligned_cols=152  Identities=11%  Similarity=-0.051  Sum_probs=115.7

Q ss_pred             hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHH
Q psy17630        133 ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA  212 (372)
Q Consensus       133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (372)
                      +++++..+.+.......++..++.++.|+++||+|||+.+..+.++..++.++.....   ..       ..+..++...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---~~-------~~~~l~~~r~  139 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA---GG-------GIALVVFCRV  139 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH---Hc-------CchHHHHHHH
Confidence            4577888889999999999999999999999999999999998888777766543321   00       1233444445


Q ss_pred             HHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhh
Q psy17630        213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTF  292 (372)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (372)
                      +.+.+.+.. .+....+++|.+|+++|++++++......++..+++.                               +.
T Consensus       140 ~~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~-------------------------------l~  187 (465)
T TIGR00894       140 IQGLAQGSV-SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLP-------------------------------IS  187 (465)
T ss_pred             HHHHhcccc-hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HH
Confidence            554444433 3444478899999999999999999999999999998                               77


Q ss_pred             HHHHHh-cccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        293 DDVERA-FGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       293 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                      +.+.+. .+|+..|.+.+++.++..++.+.+.+|+
T Consensus       188 ~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       188 GWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             HHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            888787 4999999988888777666555445443

>PRK03699 putative transporter; Provisional

Probab=99.45  E-value=1.5e-12  Score=121.25  Aligned_cols=156  Identities=7%  Similarity=-0.094  Sum_probs=107.6

Q ss_pred             hHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      .+....+.|.+.++ .|++..+.+.......++..++.++.|+++||++||+.+.....+..+...++...     +   
T Consensus       221 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-----~---  292 (394)
T PRK03699        221 QLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT-----D---  292 (394)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc-----C---
Confidence            44566788888855 59999999999999999999999999999999999998877665555443332211     1   


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC  278 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (372)
                          +.+.........+.+.+..+ +....+..|..| +.++...+.....+.+++.++|.                   
T Consensus       293 ----~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~-------------------  347 (394)
T PRK03699        293 ----DPSHLLYAILGLGFFSSAIY-TTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFV-------------------  347 (394)
T ss_pred             ----CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHH-------------------
Confidence                12222233333333332222 233245566665 34567778888888899999999                   


Q ss_pred             hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                                  +.+.+.+..|++..+++.+++++++.+.+.
T Consensus       348 ------------~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  377 (394)
T PRK03699        348 ------------VTSPIVAHFGLQAALLTANGLYAVVFVMCI  377 (394)
T ss_pred             ------------HHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence                        889999999998888887777776655443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.45  E-value=2.1e-12  Score=118.92  Aligned_cols=127  Identities=16%  Similarity=0.008  Sum_probs=96.4

Q ss_pred             hHHHHHhhHH-HHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLKR-ILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      ......+.|. +.+++|.+..+.++......++..++.++.|+++||+|||+.++++.++..++.+++.....       
T Consensus        17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~-------   89 (366)
T TIGR00886        17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ-------   89 (366)
T ss_pred             HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh-------
Confidence            4566777785 66788999999999999999999999999999999999999999999888888777655410       


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                          +.+..++...+.+.+.+ ...+ ...++.|.+|+++|+.+.++......++..+++.
T Consensus        90 ----~~~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  144 (366)
T TIGR00886        90 ----SYSVLLLLRLFIGIAGG-SFAS-CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQF  144 (366)
T ss_pred             ----hHHHHHHHHHHHHHhch-hhHh-HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHH
Confidence                12333444444444322 2333 3467899999999999999988777777766665

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.45  E-value=8.5e-12  Score=116.32  Aligned_cols=189  Identities=17%  Similarity=0.152  Sum_probs=117.5

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP  170 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  170 (372)
                      +..+.+|+|..|...++.     ++.+.++..+.+++|.+.++ .++............+...+..+++|+++||+|+|+
T Consensus       244 ~~~~vlk~~~~Wllslly-----~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~  317 (462)
T PRK15034        244 DQLPVLQRLHLWLLSLLY-----LATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR  317 (462)
T ss_pred             HHHHHhCCCchhHHHHHH-----HHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH
Confidence            356678887544333322     22333355667788888766 333333333344556778888999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCc--------------
Q psy17630        171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP--------------  236 (372)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--------------  236 (372)
                      ++.++.+...++........  ....    ..+.+.....+.......+.+.+++. -++++.+|+              
T Consensus       318 vl~~~~i~~~i~~~~~~l~l--p~~~----~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~~~~~~~~~~~~  390 (462)
T PRK15034        318 VTLINFIFMAIFSALLFLTL--PGTG----SGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITIYRVKMKGGSDE  390 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--cccc----ccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhhhcccccccchh
Confidence            99988877776664432221  1100    01123333333333345555555444 677777774              


Q ss_pred             -------chhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHH
Q psy17630        237 -------DVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTF  308 (372)
Q Consensus       237 -------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~  308 (372)
                             ++-|...|+....+.+|+++.|.                               .++...+..| +...|+.+
T Consensus       391 ~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~-------------------------------~~g~~~~~~g~~~~~~~~~  439 (462)
T PRK15034        391 QAQREAVTETAAALGFISAIGAVGGFFIPQ-------------------------------AFGMSLNMTGSPVGAMKVF  439 (462)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHcccchhhH-------------------------------HHHHHHHHcCCcHHHHHHH
Confidence                   13466778888888888888887                               7777777665 44477788


Q ss_pred             HHHHHHHHhhhheec
Q psy17630        309 AVYCIIGTFFVYFVV  323 (372)
Q Consensus       309 ~~~~~~~~~~~~~~~  323 (372)
                      .+..+++.++.+.++
T Consensus       440 ~~~~~~~~~~~w~~y  454 (462)
T PRK15034        440 LIFYIVCVLLTWLVY  454 (462)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888888887777543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.45  E-value=7e-13  Score=122.68  Aligned_cols=163  Identities=14%  Similarity=0.107  Sum_probs=126.8

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      .......|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+.+....          
T Consensus         8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~----------   77 (377)
T PRK11102          8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ----------   77 (377)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc----------
Confidence            3455677888888999999999999999999999999999999999999999999888888877765431          


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (372)
                        +.+.......+.+.+.+. ..+....++.|.+|+++|++++++.+....++..++|.                     
T Consensus        78 --~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------------------  133 (377)
T PRK11102         78 --TIDQLIYMRFLHGLAAAA-ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPI---------------------  133 (377)
T ss_pred             --cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence              123333444444444332 22334477899999999999999999999999999988                     


Q ss_pred             cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                +.+.+.+..+|+..+++.+.++++..+...++.||++
T Consensus       134 ----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        134 ----------IGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             ----------HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence                      7778888889999998888887777666655667653

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.45  E-value=4.1e-12  Score=121.60  Aligned_cols=153  Identities=13%  Similarity=0.050  Sum_probs=103.6

Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcch
Q psy17630         93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPL  171 (372)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  171 (372)
                      .+.++++..+...+..+....     ..+...++.|.++++ .|++..+.++...+..++.+++.++.|++.||+|||+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  323 (485)
T TIGR00711       249 LRLFKYRNFTIGCVYMSLLGL-----GLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL  323 (485)
T ss_pred             HHHHcCCChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH
Confidence            356777644443322222222     234556677888776 48899999999999999999999999999999999999


Q ss_pred             hhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHH
Q psy17630        172 LLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGS  251 (372)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  251 (372)
                      +..+..+.+++...+...  ...      +...+.......+.+.+.+....+.. ....+..|++.|+++.++.+....
T Consensus       324 ~~~g~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~  394 (485)
T TIGR00711       324 VTIGLILYAVGFYWRAFT--FTP------DTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQ  394 (485)
T ss_pred             HHHHHHHHHHHHHHHhcc--CCC------CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHH
Confidence            888877776666554311  001      11122333334444444444333444 445677899999999999999999


Q ss_pred             HHHHHHHH
Q psy17630        252 LIEFVVVK  259 (372)
Q Consensus       252 ~~~~~~~~  259 (372)
                      +++.+++.
T Consensus       395 ~g~~ig~~  402 (485)
T TIGR00711       395 LGGSIGTA  402 (485)
T ss_pred             HHHHHHHH
Confidence            99999988

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.45  E-value=1.3e-12  Score=123.79  Aligned_cols=159  Identities=14%  Similarity=0.132  Sum_probs=117.9

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      .....+.|.+.+++|.+..+.++..+...++..++.++.|+++||+|||++++.+.++..++.+++++..          
T Consensus        36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----------  105 (455)
T TIGR00892        36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS----------  105 (455)
T ss_pred             cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh----------
Confidence            3456678888889999999999999998888899999999999999999999998888877776654431          


Q ss_pred             ccccHHHHHHH-HHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        201 DGLGLLPVASL-AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       201 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                        +.+...... .+.+.+.+....+ ...++.+.++ ++|+++.++.+....++..++|.                    
T Consensus       106 --~~~~l~~~~~~l~G~~~~~~~~~-~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~--------------------  161 (455)
T TIGR00892       106 --NVIELYLTAGFITGLGLAFNFQP-SLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAP--------------------  161 (455)
T ss_pred             --hHHHHHHHHHHHHHhcchhhhhH-HHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHH--------------------
Confidence              112222222 2333333332223 3356678886 78999999999999999998888                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheecc
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP  324 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  324 (372)
                                 +.+.+.+..|||++|++.+++.++..+..++..+
T Consensus       162 -----------l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~  195 (455)
T TIGR00892       162 -----------LNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP  195 (455)
T ss_pred             -----------HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence                       8888888899999999988877766554443333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.45  E-value=2e-13  Score=125.82  Aligned_cols=161  Identities=14%  Similarity=0.075  Sum_probs=120.0

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      .+......|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+...+..         
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~---------   89 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD---------   89 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH---------
Confidence            34556778888899999999999999999999999999999999999999999999988888887665541         


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                         +.+..+....+.+.+.+..+.... ..+.|.+| ++|+++.++......++..+++.                    
T Consensus        90 ---~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~--------------------  144 (377)
T TIGR00890        90 ---SLAALYLTYGLASAGVGIAYGIAL-NTAVKWFP-DKRGLASGIIIGGYGLGSFILSP--------------------  144 (377)
T ss_pred             ---HHHHHHHHHHHHhHHHHHHHHhHH-HHHHHHcC-cccHHHHHHHHHhcchhHhHHHH--------------------
Confidence               123334444444444433332222 45567776 57999999988887787777666                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE  325 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e  325 (372)
                                 +...+.+..+|++.|.+.++++++..+..+++.++
T Consensus       145 -----------~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       145 -----------LITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             -----------HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence                       55666677899999998888877776665555544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.44  E-value=1.5e-11  Score=114.10  Aligned_cols=151  Identities=10%  Similarity=-0.043  Sum_probs=108.7

Q ss_pred             HHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630        122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (372)
Q Consensus       122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (372)
                      ....+.|.+.++.|.+..+.+.......++.+++.++.|++.||+|||+.+..+..+..++.+.....            
T Consensus       218 ~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~------------  285 (381)
T PRK03633        218 SLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQ------------  285 (381)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhh------------
Confidence            34456788888888888888888888889999999999999999999998887777666654433100            


Q ss_pred             cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG  281 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (372)
                         ........+.+.+.. ...|....++.|..|++.++...+..+....+++.++|.                      
T Consensus       286 ---~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~----------------------  339 (381)
T PRK03633        286 ---AAMAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPS----------------------  339 (381)
T ss_pred             ---HHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence               111112222222222 223444466788888888777777777788899999999                      


Q ss_pred             chhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhh
Q psy17630        282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV  319 (372)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  319 (372)
                               +.+.+.+..+++..|.+.+.+.++..+..
T Consensus       340 ---------~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        340 ---------FTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             ---------HHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence                     89999999999888888777776665443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.44  E-value=1.7e-12  Score=124.72  Aligned_cols=162  Identities=12%  Similarity=0.014  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630        105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG  184 (372)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~  184 (372)
                      .+..+.+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  100 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTL  100 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            33333334333344455666777888888999999999999999999999999999999999999999999888888777


Q ss_pred             HHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccc
Q psy17630        185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHR  264 (372)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  264 (372)
                      .+.+..            +.+..++...+.+.+.+... +....++.|.+|++.|+.++++......++..+++.     
T Consensus       101 ~~~~~~------------~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~-----  162 (496)
T PRK03893        101 ACGFAP------------GYWTLFIARLVIGMGMAGEY-GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQ-----  162 (496)
T ss_pred             HHHHHh------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            665431            12334444444444434333 333477899999999999999999999999999998     


Q ss_pred             cCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHH
Q psy17630        265 FTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  310 (372)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  310 (372)
                                                +.+.+.+..+|++.|.+.+.
T Consensus       163 --------------------------~~~~l~~~~~w~~~f~~~~~  182 (496)
T PRK03893        163 --------------------------VYSLVVPVWGWRALFFIGIL  182 (496)
T ss_pred             --------------------------HHHHHhccCCHHHHHHHHHH
Confidence                                      77778888899988765433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.44  E-value=4.9e-12  Score=117.04  Aligned_cols=200  Identities=16%  Similarity=0.121  Sum_probs=110.6

Q ss_pred             echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (372)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   77 (372)
                      +|..+++.++..      ||+.|++.   +++.++..++..+++||+++-    ++.            ++.+.      
T Consensus       126 ~g~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~------------~~~~~------  180 (377)
T PRK11102        126 IAPLLAPIIGGWLLVWFSWHAIFWVL---ALAAILAAALVFFFIPETLPK----ERR------------QPFHL------  180 (377)
T ss_pred             HHHHHHHHHHHHHHHHcChHHHHHHH---HHHHHHHHHHHHHhCCccCcc----ccc------------CCCCh------
Confidence            344455444433      99999988   677766566666778886420    000            00000      


Q ss_pred             HHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHH
Q psy17630         78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMT  156 (372)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~  156 (372)
                              ++...++++.++++..+...+.     ......+.+....+.|.+..+ .|++..+.+.......++.+++.
T Consensus       181 --------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~  247 (377)
T PRK11102        181 --------RTTIRNFASLFRHKRVLGYMLA-----SGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMT  247 (377)
T ss_pred             --------HHHHHHHHHHHcChHHHHHHHH-----HHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence                    0011234556666533322211     111122233444455555444 58888899999999999999999


Q ss_pred             HHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCc
Q psy17630        157 FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP  236 (372)
Q Consensus       157 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  236 (372)
                      ++.|++.||+|||+.+..+..+..+..+......... .       ..+...........+.+.... ....+..|..| 
T Consensus       248 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-  317 (377)
T PRK11102        248 IINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD-L-------GFWALVVGVAAFVGCVSMISS-NAMAVILDEFP-  317 (377)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------hHHHHHHHHHHHHHHHHHhhH-HHHHHHhcccc-
Confidence            9999999999999998887766544433322211100 0       112222222222222222222 22245567766 


Q ss_pred             chhhhHHHHHHHHHH
Q psy17630        237 DVKGLALGVICILGS  251 (372)
Q Consensus       237 ~~r~~~~~~~~~~~~  251 (372)
                      +.|+++.++.+....
T Consensus       318 ~~~g~~~~~~~~~~~  332 (377)
T PRK11102        318 HMAGTASSLAGTLRF  332 (377)
T ss_pred             ccchHHHHHHHHHHH
Confidence            788998888776544

>PRK11043 putative transporter; Provisional

Probab=99.43  E-value=4.1e-12  Score=118.63  Aligned_cols=156  Identities=12%  Similarity=0.031  Sum_probs=115.2

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      +......|.+.++.|.+..+.++..+...++..++.+++|+++||+|||+.+..+..+..++.+.....           
T Consensus        23 ~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------   91 (401)
T PRK11043         23 DMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-----------   91 (401)
T ss_pred             HHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----------
Confidence            444445556677889999999999999999999999999999999999999998888777766655433           


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (372)
                       .+.+..++...+.+.+.+.. .+....++.|.+|++.++...+..+....++..++|.                     
T Consensus        92 -~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------------------  148 (401)
T PRK11043         92 -ESAAQLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPL---------------------  148 (401)
T ss_pred             -cCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence             11233333333433332222 2222356789999988888888888888888888888                     


Q ss_pred             cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                                +.+.+.+..+|+..+++.+++.++..+..+
T Consensus       149 ----------i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  178 (401)
T PRK11043        149 ----------LGAWLLNHFGWQAIFATLFAITLLLILPTL  178 (401)
T ss_pred             ----------HHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence                      778888888999988888777776665544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.43  E-value=3.8e-12  Score=119.88  Aligned_cols=155  Identities=17%  Similarity=0.176  Sum_probs=114.4

Q ss_pred             hHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFYLLKLDE  197 (372)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (372)
                      ++.+..++|.++.+ +|++..+.+...........++.+++|+++||+ |||++++++.++..++.+++...    ..  
T Consensus        25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----~~--   98 (493)
T PRK15462         25 FYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----EI--   98 (493)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----hc--
Confidence            56677778877655 599999999999999999999999999999999 99999999998888877654321    00  


Q ss_pred             cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc--hhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD--VKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG  275 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (372)
                           ..........+...+.+... +...++++|.+|++  .|.++.++.+...++|+.++|.                
T Consensus        99 -----~~~~~~l~l~li~iG~G~~~-~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~----------------  156 (493)
T PRK15462         99 -----HPSFLYLSLAIIVCGYGLFK-SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI----------------  156 (493)
T ss_pred             -----chhHHHHHHHHHHHhccccc-ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH----------------
Confidence                 01112222223323333322 33347889999976  6899999999999999999999                


Q ss_pred             hhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHh
Q psy17630        276 VICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTF  317 (372)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  317 (372)
                                     +.+.+.+..||+..|.+.++..+++.+
T Consensus       157 ---------------l~g~L~~~~Gw~~~F~iaaigm~l~li  183 (493)
T PRK15462        157 ---------------ACGYAQEEYSWAMGFGLAAVGMIAGLV  183 (493)
T ss_pred             ---------------HHHHHHhhhChHHHHHHHHHHHHHHHH
Confidence                           888888889999988876554444433

>PRK11043 putative transporter; Provisional

Probab=99.43  E-value=1.6e-11  Score=114.60  Aligned_cols=155  Identities=10%  Similarity=-0.013  Sum_probs=93.5

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP  170 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  170 (372)
                      ++++.+++++.+...+......     ........+.|.+.++.|++..+.++......++..++.++.+++.||+|+|+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~  269 (401)
T PRK11043        195 TFKQLLKSKTYLGNVLIFAACS-----AAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ  269 (401)
T ss_pred             HHHHHHcChhHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            4566677764443332221111     11234455677788888888888888888888888999999999999999998


Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHH
Q psy17630        171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG  250 (372)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  250 (372)
                      ......+..+++.+.+.........       ..+..+....+.+.+.+..+. .......|..| +.|+++.++.+..+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~  340 (401)
T PRK11043        270 LLPWLLVLFAVSVIAIWLASLLSHP-------SLVPLLIPFCVMAAANGAIYP-IVVAQALRPFP-QATGKAAALQNTLQ  340 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccC-------cHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhCc-ccChHHHHHHHHHH
Confidence            7766555555444333222111111       122222333333333333332 22244456666 57999999999888


Q ss_pred             HHHHHHHHH
Q psy17630        251 SLIEFVVVK  259 (372)
Q Consensus       251 ~~~~~~~~~  259 (372)
                      ..++..++.
T Consensus       341 ~~~~~~~~~  349 (401)
T PRK11043        341 LGLCFLASL  349 (401)
T ss_pred             HHHHHHHHH
Confidence            888887777

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.41  E-value=1.1e-11  Score=118.82  Aligned_cols=187  Identities=13%  Similarity=0.030  Sum_probs=112.6

Q ss_pred             HHHHHHhhchHHHHHhhHHHHHhcCCCCCC-hhhH-----HHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630        111 LLCFLSFSGINVVIFYLKRILIATNSKIIS-PNYG-----QNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG  184 (372)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~-----~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~  184 (372)
                      +..+........+.+..|.+.++++.+..+ ..+.     .+...++..++.++.|+++||+|||+++.+++++.+++.+
T Consensus        23 ~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~  102 (490)
T PRK10642         23 LGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTF  102 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            333334444455566677666666433322 1221     3455678889999999999999999999999999999988


Q ss_pred             HHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccc
Q psy17630        185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHR  264 (372)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  264 (372)
                      ++++...+..-+    .......++...+.+.+.+..+. ....+++|.+|+++|+...++......+|..+++..    
T Consensus       103 ~~a~~~~~~~~g----~~a~~~l~~~R~l~G~g~g~~~~-~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~----  173 (490)
T PRK10642        103 CIGLIPSYATIG----IWAPILLLLCKMAQGFSVGGEYT-GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGV----  173 (490)
T ss_pred             HHHhcccHHHHH----HHHHHHHHHHHHHHHhHhHhhHH-HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH----
Confidence            877652111000    00001234445555555444433 444889999999999999888776666666555540    


Q ss_pred             cCCcccccchhhhhhhcchhhhhhh-hhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        265 FTPDVKGLALGVICILGSLIEFVVV-KTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                          ...+. .+........|||+.|++.+.++++.. +....+||+.
T Consensus       174 --------------------~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp  216 (490)
T PRK10642        174 --------------------VVLISTIVGEANFLDWGWRIPFFIALPLGIIGL-YLRHALEETP  216 (490)
T ss_pred             --------------------HHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHH-HHHHcCCCCh
Confidence                                00000 011122346799999988665555433 3344677763

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.41  E-value=6.4e-12  Score=116.94  Aligned_cols=132  Identities=13%  Similarity=0.070  Sum_probs=83.0

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.|++.   +++.++..++..+++||+++.   + + ++           +.                 ...+..++.
T Consensus       156 ~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~---~-~-~~-----------~~-----------------~~~~~~~~~  199 (392)
T PRK10473        156 WQSLFYTM---AAMGILVLLLSLFILKETRPA---R-A-PA-----------AS-----------------SKPRENSES  199 (392)
T ss_pred             hHHHHHHH---HHHHHHHHHHHHHHcCCCCCc---c-c-CC-----------cc-----------------chHHHHHHH
Confidence            99999998   777777666667778887421   0 0 00           00                 000112345


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  174 (372)
                      ++++..+...+........     ......+.|.+. ++.|++..+.+.......++.+++.++.+++.||+|||+.+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~  274 (392)
T PRK10473        200 LLNRFFLSRLVITTLSVTV-----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLT  274 (392)
T ss_pred             HhCHHHHHHHHHHHHHHHH-----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            5555444333322221111     122334455544 4558888888888888999999999999999999999999988


Q ss_pred             hhHHHHHHHHHHHH
Q psy17630        175 SDICMAICIGALGY  188 (372)
Q Consensus       175 ~~~~~~~~~~~~~~  188 (372)
                      +..+..++.+.+..
T Consensus       275 ~~~~~~~~~~~~~~  288 (392)
T PRK10473        275 SQVLFLAAGITLAL  288 (392)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777766665543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.41  E-value=1.3e-12  Score=124.35  Aligned_cols=163  Identities=13%  Similarity=0.050  Sum_probs=115.4

Q ss_pred             HHHhhHHHHHhcCCC--------CCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhh
Q psy17630        123 VIFYLKRILIATNSK--------IISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLK  194 (372)
Q Consensus       123 ~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  194 (372)
                      .....+....+.+++        ..+.++..+...++..++.++.|+++||+|||++++.+.++..++.++.....   .
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---~  123 (481)
T TIGR00879        47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---F  123 (481)
T ss_pred             hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---c
Confidence            344445555555544        78889999999999999999999999999999999999888887777664431   0


Q ss_pred             ccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccch
Q psy17630        195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLAL  274 (372)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (372)
                            ....+..++...+.+.+.+... +....++.|.+|+++|+++.++.+....+|..+++.               
T Consensus       124 ------~~~~~~~~~~r~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~---------------  181 (481)
T TIGR00879       124 ------ALSVEMLIVGRVLLGIGVGIAS-ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG---------------  181 (481)
T ss_pred             ------ccchHHHHHHHHHHHhhhhHHH-hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHH---------------
Confidence                  0112244555555555544433 344578899999999999999999999999988887               


Q ss_pred             hhhhhhcchhhhhhhhhh---HHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        275 GVICILGSLIEFVVVKTF---DDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                      +.   ....+..+||+.|++.+...++..+ ..+++||+.
T Consensus       182 ----------------~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~l~~~~  220 (481)
T TIGR00879       182 ----------------FGSGKVSLNNTLGWRIPLGLQLIPAGLLFL-GLFFLPESP  220 (481)
T ss_pred             ----------------HHHHhhcCCCCccHHHHHHHHHHHHHHHHH-HHhcCCCCh
Confidence                            44   3333557899888885555544443 344677763

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.40  E-value=7.1e-12  Score=116.91  Aligned_cols=161  Identities=14%  Similarity=0.138  Sum_probs=120.0

Q ss_pred             HHHHHhhHHH-HHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        121 NVVIFYLKRI-LIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       121 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      +....+.+.+ .++.|.+..+.++......+...+..++.|+++||+|||+++..+.++..++.+.+...          
T Consensus        27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~----------   96 (400)
T PRK11646         27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA----------   96 (400)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh----------
Confidence            4445555554 46679999999999999999999999999999999999999999998888877766443          


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                        ++.+.......+.+.+.+. ..+...+++.|.+|+++|++++++.+....++..++|.                    
T Consensus        97 --~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~--------------------  153 (400)
T PRK11646         97 --HEPWLLWLSCILSGLGGTL-FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGAL--------------------  153 (400)
T ss_pred             --ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence              1133444444444444332 23333477899999999999999999999999999998                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                                 +.+.+. ..+|++.|++.+.++++..++..++.||.
T Consensus       154 -----------l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        154 -----------LGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             -----------HHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence                       777776 67899888887777666655544455653

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.40  E-value=3.3e-11  Score=113.70  Aligned_cols=174  Identities=17%  Similarity=0.149  Sum_probs=122.3

Q ss_pred             hchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc--chhhHhhHHHHHHHHHHHHHHHHhh
Q psy17630        118 SGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR--PLLLISDICMAICIGALGYYFYLLK  194 (372)
Q Consensus       118 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~~~~~~~  194 (372)
                      .+.+.+......+.. .+|++..+.........+.+++|++++|++.||+|.|  ++++++.++..+..+.-.+-.... 
T Consensus       295 dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~-  373 (477)
T PF11700_consen  295 DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPS-  373 (477)
T ss_pred             HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhc-
Confidence            345566666666655 5699999999999999999999999999999999999  777776665543333221100010 


Q ss_pred             ccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccch
Q psy17630        195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLAL  274 (372)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (372)
                      ..   ...+.+.+.+...+.+...+ +..+..-++.+|+.|+++.+..+|+....+...+.++|.               
T Consensus       374 ~~---g~~~~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl---------------  434 (477)
T PF11700_consen  374 FF---GLKSPWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL---------------  434 (477)
T ss_pred             cc---CcccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH---------------
Confidence            00   01223444444444444444 334455688899999999999999999999999999999               


Q ss_pred             hhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        275 GVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                                      +++.+.+..| .|..+....++.+++.++.+ .++..|+
T Consensus       435 ----------------l~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~-~v~~~~g  472 (477)
T PF11700_consen  435 ----------------LFGLITDATGSQRYGFLFLLVLFLIGLILLF-FVDVEKG  472 (477)
T ss_pred             ----------------HHHHHHHHhCCchhHHHHHHHHHHHHHHHHh-hccchhh
Confidence                            8888888887 66777777777777776654 5555444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.39  E-value=8.7e-12  Score=116.34  Aligned_cols=161  Identities=9%  Similarity=-0.187  Sum_probs=112.7

Q ss_pred             hHHHHHhhHHH-HHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLKRI-LIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      .......+|.+ .+++|.+..+.++..+...++..+++++.|+++||+|||+++..+.++.+++.+.+..........  
T Consensus        31 ~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~--  108 (399)
T PRK05122         31 IGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWP--  108 (399)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccc--
Confidence            45556667765 456799999999999999999999999999999999999999999888777665544332111100  


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC  278 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (372)
                        ....+..++...+.+.+.+... +....++.|.+|+++|+++.++......++..+++.                   
T Consensus       109 --~~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~-------------------  166 (399)
T PRK05122        109 --VLSLLLLLLGRLLLGIGESLAG-TGSILWGIGRVGALHTGRVISWNGIATYGALAIGAP-------------------  166 (399)
T ss_pred             --hhHHHHHHHHHHHHHhhHHhhc-chHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHH-------------------
Confidence              0011233344444444444332 333366789999999999999888777777778887                   


Q ss_pred             hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHH
Q psy17630        279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT  316 (372)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  316 (372)
                                  +.+.+.+..||+..+++.++++++..
T Consensus       167 ------------l~~~l~~~~g~~~~~~~~~~~~~~~~  192 (399)
T PRK05122        167 ------------LGVLLYHWGGLAGLGLLIMLLALLGL  192 (399)
T ss_pred             ------------HHHHHHHcccHHHHHHHHHHHHHHHH
Confidence                        77777788899877766555544433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.39  E-value=1e-11  Score=118.36  Aligned_cols=164  Identities=12%  Similarity=0.085  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHH
Q psy17630        103 KATIVIVGLLCFLSFSGINVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMA  180 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~  180 (372)
                      +.....+........ +++....+++.++ +++|++..+..+..........+..+++|+++|| +|||++++.+.++..
T Consensus        14 ~~~~~~~~~~~~er~-~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~   92 (489)
T PRK10207         14 RPFFMIFFVELWERF-GYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA   92 (489)
T ss_pred             hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence            334444444433333 3555555555554 4579888888888888888888888999999999 999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcch--hhhHHHHHHHHHHHHHHHHH
Q psy17630        181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVV  258 (372)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~  258 (372)
                      ++.+.+++..    .       ......+...+.+.+.+.... ...+++.|.+|+++  |+.+.++.+...++|..++|
T Consensus        93 ~g~~~~~~~~----~-------~~~ll~~~~~l~~ig~g~~~~-~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~  160 (489)
T PRK10207         93 IGYFMTGMSL----L-------KPDLIFIALGTIAVGNGLFKA-NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL  160 (489)
T ss_pred             HHHHHHHHhc----c-------chhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence            9888776541    0       011222334444444443333 33478899998874  47789999999999999999


Q ss_pred             HhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHH
Q psy17630        259 KTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV  310 (372)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  310 (372)
                      .                               +.+.+.+..||++.|++.++
T Consensus       161 ~-------------------------------l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        161 S-------------------------------LAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             H-------------------------------HHHHHHHhhChHHHHHHHHH
Confidence            8                               88888888999998877544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.38  E-value=2.4e-11  Score=113.29  Aligned_cols=147  Identities=15%  Similarity=-0.001  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHhhchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHH
Q psy17630        104 ATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAIC  182 (372)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~  182 (372)
                      +.+....+.+...+..........+.+.+ ++|++..|.+++.++..+...++.+..|++.||+|.|+++.++.++..+.
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~  113 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP  113 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            34444444444444434445555555555 68999999999999999999999999999999999999999998888877


Q ss_pred             HHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        183 IGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .+..++.....       .++.+..++...+.+++ +..+. .....+++.+|+++||+++|+....+++|..+.+.
T Consensus       114 ~~~~~~a~~~~-------~~s~~~lli~r~l~Gig-g~~f~-~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~  181 (462)
T PRK15034        114 CVWLGIAVQNP-------NTPFGIFIVIALLCGFA-GANFA-SSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL  181 (462)
T ss_pred             HHHHHHHHccc-------CCCHHHHHHHHHHHHHH-HHhHH-HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence            77655421000       01233444445555444 33333 34467899999999999999987666666665554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.38  E-value=1.4e-11  Score=116.09  Aligned_cols=186  Identities=13%  Similarity=0.037  Sum_probs=109.4

Q ss_pred             HHHHhhchHHHHHhhHHHHHhcC---CCCCCh---hhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHH
Q psy17630        113 CFLSFSGINVVIFYLKRILIATN---SKIISP---NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGAL  186 (372)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  186 (372)
                      ..........+.+..|.+.++++   .+..+.   ........++..+++++.|+++||+|||+++..+.++.+++.+.+
T Consensus        31 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~  110 (432)
T PRK10406         31 NLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVI  110 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            33444445566677777777764   233322   233444556666999999999999999999999999998888877


Q ss_pred             HHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccC
Q psy17630        187 GYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFT  266 (372)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (372)
                      ++........    .......++...+.+.+.+..+ +...++++|.+|+++|+...++.......|..+++..      
T Consensus       111 ~~~~~~~~~~----~~~~~~l~~~R~l~G~g~g~~~-~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~------  179 (432)
T PRK10406        111 ACLPGYETIG----TWAPALLLLARLFQGLSVGGEY-GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV------  179 (432)
T ss_pred             hhcCCchhHH----HHHHHHHHHHHHHHHhhhhhhH-hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH------
Confidence            6541110000    0001234444555554444333 4445899999999999998887766555555554430      


Q ss_pred             CcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        267 PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                    +..+...   .........|||.+|.+.++.+++... .....||++
T Consensus       180 --------------~~~~~~~---~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~  222 (432)
T PRK10406        180 --------------VVVLQQT---LEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETS  222 (432)
T ss_pred             --------------HHHHHHh---CCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCc
Confidence                          0000000   001112357999999877766655433 233456653

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.37  E-value=9.6e-12  Score=118.36  Aligned_cols=155  Identities=14%  Similarity=0.088  Sum_probs=117.9

Q ss_pred             chHHHHHhhHHHHHh---cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHHhh
Q psy17630        119 GINVVIFYLKRILIA---TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLK  194 (372)
Q Consensus       119 ~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~  194 (372)
                      +++....++|.++.+   +|++..+.+.......++..++.+++|+++|| +|||+++.++.++.+++.++++...    
T Consensus        25 ~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~----  100 (475)
T TIGR00924        25 SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI----  100 (475)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc----
Confidence            456677778887765   68899999999999999999999999999999 8999999999998888877665430    


Q ss_pred             ccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcch---hhhHHHHHHHHHHHHHHHHHHhhccccCCcccc
Q psy17630        195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV---KGLALGVICILGSLIEFVVVKTVRHRFTPDVKG  271 (372)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (372)
                              +.+...+...+.+.+.+.. .+...++++|.+|++.   |+++.++.+...++|+.++|.            
T Consensus       101 --------~~~~~~~~~~l~g~g~g~~-~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~------------  159 (475)
T TIGR00924       101 --------YPDLIFYGLGTIAVGSGLF-KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL------------  159 (475)
T ss_pred             --------cHhHHHHHHHHHHhccccc-cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHH------------
Confidence                    1223333344444443332 3344477889998754   888999999999999999999            


Q ss_pred             cchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHh
Q psy17630        272 LALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTF  317 (372)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  317 (372)
                                         +.+.+.+..+|+..|.+.++..+++.+
T Consensus       160 -------------------l~g~l~~~~g~~~~f~~~~~~~~~~~l  186 (475)
T TIGR00924       160 -------------------LAGVIAENYGYHVGFNLAAVGMVIGLL  186 (475)
T ss_pred             -------------------HHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence                               888888888999888877755554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.37  E-value=4.1e-11  Score=107.58  Aligned_cols=142  Identities=10%  Similarity=-0.019  Sum_probs=97.3

Q ss_pred             HHHHHhhHHHHHh---cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630        121 NVVIFYLKRILIA---TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE  197 (372)
Q Consensus       121 ~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (372)
                      .....|.+.++++   .|++..+.+...+....+.++|.++.+++.||+|+|+.+.++..+..++.++....    .   
T Consensus       157 ~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~----~---  229 (310)
T TIGR01272       157 VSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT----H---  229 (310)
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc----C---
Confidence            3456677777764   38888999999999999999999999999999999998877776666655333221    0   


Q ss_pred             cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhh
Q psy17630        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVI  277 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (372)
                            .........+.+.+.+..+. ...+...+.+|++ .+++.++. ..+.+|+++.|.                  
T Consensus       230 ------~~~~~~~~~l~g~~~s~i~P-~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~------------------  282 (310)
T TIGR01272       230 ------GYVAMWFVLALGLFNSIMFP-TIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPL------------------  282 (310)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHH------------------
Confidence                  11122333344444444444 3335666667654 45566664 567788899998                  


Q ss_pred             hhhcchhhhhhhhhhHHHHHhcccchhhHHHH
Q psy17630        278 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFA  309 (372)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  309 (372)
                                   +.+.+.+..|.+.++++..
T Consensus       283 -------------l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       283 -------------LQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             -------------HHHHHHHhccchHHHHHHH
Confidence                         8898989888877776433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK12382 putative transporter; Provisional

Probab=99.37  E-value=1e-11  Score=115.55  Aligned_cols=156  Identities=12%  Similarity=-0.136  Sum_probs=107.1

Q ss_pred             hHHHHHhhHHH-HHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLKRI-LIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      .......+|.+ .+++|.+..+.++..+...+...+++++.|+++||+|||+.++.+.+...++.+............  
T Consensus        31 ~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~--  108 (392)
T PRK12382         31 VGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSA--  108 (392)
T ss_pred             HHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccch--
Confidence            34445566654 467799999999999999999999999999999999999999988777666544322211100000  


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC  278 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (372)
                        ..+.+..++...+.+.+.+... +....++.|.+|+++|++++++.......+..++|.                   
T Consensus       109 --~~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~-------------------  166 (392)
T PRK12382        109 --PFKFALLVVGRLILGFGESQLL-TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAP-------------------  166 (392)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHH-------------------
Confidence              0112334444445544444322 233356789999999999999988888888888887                   


Q ss_pred             hhcchhhhhhhhhhHHHHHhcccchhhHHHHHH
Q psy17630        279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY  311 (372)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  311 (372)
                                  +.+.+.+..||+..+.+....
T Consensus       167 ------------~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        167 ------------LGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             ------------HHHHHHhccChHHHHHHHHHH
Confidence                        777777778887655544433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.37  E-value=1.2e-11  Score=112.83  Aligned_cols=156  Identities=15%  Similarity=0.120  Sum_probs=121.9

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ........|.+.++.|.+..+.++......++..++.++.|+++||+|||+.+..+.++..++.+.....     +    
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~----   85 (352)
T cd06174          15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-----S----   85 (352)
T ss_pred             hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-----c----
Confidence            4556677788888889899999999999999999999999999999999999999988888887776543     1    


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                         +.+.......+.+.+.+... +....++.|.+|+++|++.+++.+....++..+++.                    
T Consensus        86 ---~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------------  141 (352)
T cd06174          86 ---SLWLLLVGRFLLGLGGGALY-PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPL--------------------  141 (352)
T ss_pred             ---cHHHHHHHHHHHHccccccc-HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHH--------------------
Confidence               12344444444444444333 344478899999999999999999999999999998                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhh
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV  319 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  319 (372)
                                 +.+.+.+..+|+..+.+.+.+.++..+..
T Consensus       142 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (352)
T cd06174         142 -----------LGGLLAESLGWRWLFLILAILGLLLALLL  170 (352)
T ss_pred             -----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence                       77777777788888877776666555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00901 2A0125 AmpG-related permease

Probab=99.36  E-value=1.1e-11  Score=113.69  Aligned_cols=130  Identities=10%  Similarity=0.056  Sum_probs=82.7

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHH-HHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVG-FIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      ......+.|.+.++.|++..+.+......+ +..+++.+++|++.||+|||+.+..+.++.++...+........... .
T Consensus       225 ~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~  303 (356)
T TIGR00901       225 DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHD-G  303 (356)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc-c
Confidence            345566777777778888888877776555 57789999999999999999998888777766555433221000000 0


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHH
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGS  251 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  251 (372)
                      ......+.......+..++.+.... ...+++.|.+|++.||+.+++.+...+
T Consensus       304 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       304 ITFPHLLMLFLTITLEAVTGGLGTV-AFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            0001123333333333344333333 444888999999999999999876543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.36  E-value=4.8e-11  Score=111.33  Aligned_cols=123  Identities=9%  Similarity=0.049  Sum_probs=78.3

Q ss_pred             HHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHh-hcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccc
Q psy17630        124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD-KAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG  202 (372)
Q Consensus       124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (372)
                      ..+.|.+.++.+.++.+.+.......+....+....+++.| |++.++.+..+.++.+++.+++...     +       
T Consensus       228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-----~-------  295 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-----S-------  295 (400)
T ss_pred             HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----h-------
Confidence            45677777776556677777777766666655555555554 5666666666666666555444332     0       


Q ss_pred             ccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +.+.......+.+.+.+... +...+++.|..|++.|++++++.+....++..++|.
T Consensus       296 ~~~~~~~~~~l~~~g~~~~~-p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~  351 (400)
T PRK11646        296 NLQQLFTLICLFYIGSIIAE-PARETLSASLADARARGSYMGFSRLGLALGGAIGYI  351 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHH-ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhccc
Confidence            11222222333333333222 333377789999999999999999999999999998

>TIGR00897 2A0118 polyol permease family

Probab=99.35  E-value=1.6e-11  Score=114.72  Aligned_cols=130  Identities=13%  Similarity=-0.020  Sum_probs=90.9

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      .....+.+.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+.+... ....      
T Consensus        30 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-~~~~------  102 (402)
T TIGR00897        30 GLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVF-GLGH------  102 (402)
T ss_pred             hhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH-hccC------
Confidence            344556677778889999999999999999999999999999999999999999888887776543211 0000      


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH-HHHHH
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE-FVVVK  259 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~-~~~~~  259 (372)
                       .+.+..+....+.+.+.+.. .+....++.|.+|+++|++++|+.+....++. .++|.
T Consensus       103 -~~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~  160 (402)
T TIGR00897       103 -ANYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSY  160 (402)
T ss_pred             -ccHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11223333333333333222 22222556788999999999999998888775 45665

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10054 putative transporter; Provisional

Probab=99.35  E-value=1.4e-11  Score=114.67  Aligned_cols=142  Identities=13%  Similarity=0.093  Sum_probs=93.3

Q ss_pred             CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHH
Q psy17630        135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY  214 (372)
Q Consensus       135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (372)
                      +.+....+.......+.........|++.||.++|+.+..++.+..++...+...    .+       +.+.........
T Consensus       240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~  308 (395)
T PRK10054        240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS----GN-------SLLLWGMSAAVF  308 (395)
T ss_pred             chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc----ch-------HHHHHHHHHHHH
Confidence            4444455566666666666777888999999999999888877776665544322    00       122222333333


Q ss_pred             HHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHH
Q psy17630        215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDD  294 (372)
Q Consensus       215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (372)
                      +.+.. ...+....++.+..|++.|++..+..+ ...+|..++|.                               ..+.
T Consensus       309 ~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~-------------------------------~~G~  355 (395)
T PRK10054        309 TVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPL-------------------------------VSGV  355 (395)
T ss_pred             HHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHH-------------------------------HHHH
Confidence            33322 223344467788899999999888654 56688999999                               8999


Q ss_pred             HHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        295 VERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       295 ~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                      +.+..|....|++.+.+..+..++..
T Consensus       356 l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        356 ILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            99999887777776665555554443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.35  E-value=3.2e-12  Score=116.80  Aligned_cols=212  Identities=18%  Similarity=0.247  Sum_probs=126.4

Q ss_pred             echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (372)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   77 (372)
                      +|..+++.++..      ||+.|++.   +++.++..++..++++++|+....+.+.++                 +   
T Consensus       132 ~g~~~g~~l~~~l~~~~~~~~~~~~~---~~~~~~~~il~~~~~~~~~~~~~~~~~~~~-----------------~---  188 (352)
T PF07690_consen  132 LGSILGPLLGGFLISYFGWRWAFLIS---AILSLIAAILFILFLPEPPPPRERESPKES-----------------E---  188 (352)
T ss_dssp             HHHHHHHHHHHHCCCHCHHCCHHHHH---HHHHHHHHHHHHCCC---STTTT--SSTTT-----------------T---
T ss_pred             hhhhcccchhhhhhhccccccccccc---cchhhhhhhhHhhhhhhccccccccccccc-----------------c---
Confidence            455555555554      99999999   777777655555666655431111000000                 0   


Q ss_pred             HHHHHHHhhhhhh-hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHH-HHhcCCC-CCChhhHHHHHHHHHHH
Q psy17630         78 LQKELDIQAQKKK-SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIATNSK-IISPNYGQNIVGFIQVI  154 (372)
Q Consensus        78 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~  154 (372)
                           ++++++.. .++.+++++..| ..+.......    ........+.|.+ .+..|.+ ..+.+....+..+..++
T Consensus       189 -----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  258 (352)
T PF07690_consen  189 -----SKKPKPLKPGFKSLFKNPVLW-ILLIAFFLFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGII  258 (352)
T ss_dssp             -------HHHCCCH-CTHHHHHHCCH-HHHHHHHHHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHH
T ss_pred             -----cccccccccccccccccchhh-hhhhhhhHHH----HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence                 00011111 245555555343 2222222221    1234467777776 5566878 67778888889999999


Q ss_pred             HHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCC
Q psy17630        155 MTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF  234 (372)
Q Consensus       155 ~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  234 (372)
                      +.++.|+++||+++|+..........+..+.+......  .       +....+....+.+.+.+.. .+....++.|..
T Consensus       259 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~  328 (352)
T PF07690_consen  259 GSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS--S-------SPVWLIIALFLIGFGFGIV-FPILFSLIQELV  328 (352)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH--C-------HHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh--h-------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence            99999999999999888777766666555544332111  0       1223333444444444433 344448889999


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHH
Q psy17630        235 TPDVKGLALGVICILGSLIEFVVV  258 (372)
Q Consensus       235 p~~~r~~~~~~~~~~~~~~~~~~~  258 (372)
                      |++.|+++.++.+....+++.++|
T Consensus       329 ~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  329 PPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999998876

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.34  E-value=1.8e-11  Score=113.89  Aligned_cols=150  Identities=11%  Similarity=-0.044  Sum_probs=115.9

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      .......|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+..++.           
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a-----------   94 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY-----------   94 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-----------
Confidence            345677888999999999999999999999999999999999999999999999999999999887665           


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (372)
                       ++.+..++...+.+++.+...... ..++.|.+| ++|+.++++.......+..+++.                     
T Consensus        95 -~~~~~ll~~r~l~Gig~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~---------------------  150 (393)
T PRK09705         95 -PQSALLLSSALLGGVGIGIIQAVM-PSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAA---------------------  150 (393)
T ss_pred             -cchHHHHHHHHHHHhHHHHHhhhh-hHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHH---------------------
Confidence             123344555555555555433333 366788887 77999999988888788888887                     


Q ss_pred             cchhhhhhhhhhHHHHHhc-ccchhhHHHHHHHHHH
Q psy17630        281 GSLIEFVVVKTFDDVERAF-GTGVAFGTFAVYCIIG  315 (372)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~  315 (372)
                                +.+.+.++. +||..+.+++...++.
T Consensus       151 ----------~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        151 ----------ITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             ----------HHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence                      666666664 7888776655554433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.34  E-value=3.6e-11  Score=107.67  Aligned_cols=163  Identities=15%  Similarity=0.059  Sum_probs=125.4

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ........+.+-+++|+|+.|.+++.+...+.+.+..+..|.+.||+|-|++..+++++..+-++..++....       
T Consensus        30 W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~-------  102 (417)
T COG2223          30 WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTY-------  102 (417)
T ss_pred             HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccC-------
Confidence            3445555566667889999999999999999999999999999999999999999999988888877665211       


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                        .+.+..+++..+.+  .+.+...+...++++.||++++|+++|+.. .+++|..+...                    
T Consensus       103 --~~~~~ll~~gll~G--~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~--------------------  157 (417)
T COG2223         103 --PSTWQLLVIGLLLG--LAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQL--------------------  157 (417)
T ss_pred             --CchHHHHHHHHHHh--cccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHH--------------------
Confidence              11233333333332  223333344478899999999999999988 99999998888                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcc---cchhhHHHHHHHHHHHhhhheeccC
Q psy17630        280 LGSLIEFVVVKTFDDVERAFG---TGVAFGTFAVYCIIGTFFVYFVVPE  325 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~e  325 (372)
                                 +.+.+....+   |+....++....++..+..++...+
T Consensus       158 -----------~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         158 -----------VAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             -----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                       8888888888   8888888888877777777766543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.34  E-value=2.2e-11  Score=113.77  Aligned_cols=130  Identities=8%  Similarity=-0.115  Sum_probs=99.5

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ........|.+.+++|.+..+.++..+...++..++++..|++.||+|||+++..+..+.+++.+++.....  .     
T Consensus        19 ~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--~-----   91 (410)
T TIGR00885        19 NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--I-----   91 (410)
T ss_pred             HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh--h-----
Confidence            345557778888888999999999999999999999999999999999999999999998888766433210  0     


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                        .+.+..+....+.+.+.+....... .++.+..|+++|++..++.+....+|..++|.
T Consensus        92 --~~~~~~l~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~  148 (410)
T TIGR00885        92 --MNYTLFLVGLFILTAGLGFLETAAN-PYILVMGPESTATRRLNLAQSFNPFGSIIGMV  148 (410)
T ss_pred             --ccHHHHHHHHHHHHhhHHHHHhhhh-HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence              1123344445555555554444333 66778889999999999998888888888887

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.33  E-value=8.3e-12  Score=118.96  Aligned_cols=153  Identities=14%  Similarity=0.105  Sum_probs=108.8

Q ss_pred             HHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccc
Q psy17630        124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL  203 (372)
Q Consensus       124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (372)
                      ...++.+..+.| +..+..++.....+...++.++.|+++|.+|||..++.+.++..++.++.+.+            ++
T Consensus        64 a~~l~~I~~diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------------~~  130 (599)
T PF06609_consen   64 ASILPYINADIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------------QN  130 (599)
T ss_pred             HHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC------------Cc
Confidence            444567778888 45677788888999999999999999999999999999999999999887655            22


Q ss_pred             cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcch
Q psy17630        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSL  283 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (372)
                      ....+....+.+.+.+  ...+....++|+.|.+.|..+.++...........++.                        
T Consensus       131 ~~~~iag~~l~GvgaG--~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~------------------------  184 (599)
T PF06609_consen  131 MNTFIAGMVLYGVGAG--VQELAALAISELVPNKWRGLGLAIASIPFIITTWISPL------------------------  184 (599)
T ss_pred             HHHHHHHHHHHHHhhH--HHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHH------------------------
Confidence            3344555555555433  22233355799999999988776655443333333444                        


Q ss_pred             hhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhhee
Q psy17630        284 IEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFV  322 (372)
Q Consensus       284 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  322 (372)
                             ....+....+|||.|++..++..++++..+++
T Consensus       185 -------ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f  216 (599)
T PF06609_consen  185 -------IAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF  216 (599)
T ss_pred             -------HHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence                   44445556789999988888777766654444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.33  E-value=9.1e-12  Score=113.55  Aligned_cols=187  Identities=13%  Similarity=0.145  Sum_probs=131.4

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh----cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA----TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA  166 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  166 (372)
                      +..+++|+|++|...+........     ++.+-...+.+...    .+.+....+.+.+...+..++...+..++.+|+
T Consensus       212 ~~~~l~k~~~fw~~~l~v~g~~~~-----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri  286 (412)
T PF01306_consen  212 DVLSLFKMRNFWFFVLFVIGVAAI-----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI  286 (412)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            466788887666555444444333     33333333444433    334455678889999999999999999999999


Q ss_pred             CCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHH
Q psy17630        167 GRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVI  246 (372)
Q Consensus       167 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  246 (372)
                      |.|+.++++..++.+=.+.+++.            ++++.+...-.+.+.-+.....+.. -|+.+.+|++..++...+.
T Consensus       287 g~k~~Lllag~i~~iRi~~~~~~------------~~~~~i~~~klLH~~e~~l~lva~f-kYI~~~fd~rlsAt~y~v~  353 (412)
T PF01306_consen  287 GAKNLLLLAGVIMAIRIIGSGFA------------TNPWVISLIKLLHALEFPLLLVAAF-KYITAHFDKRLSATLYLVG  353 (412)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHT--------------SHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHS-GGGHHHHHHHH
T ss_pred             ChHhHHHHHHHHHHHHHHHHhhh------------cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHhHHHHHHHHH
Confidence            99999999988888887776655            2345555555566555554444343 6889999999988988885


Q ss_pred             -HHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630        247 -CILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE  325 (372)
Q Consensus       247 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e  325 (372)
                       +...+++..+.+.                               ..+.+.++.|.+.+|++.+.+.+...++..+.+++
T Consensus       354 ~~~~~~~~~~i~s~-------------------------------~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  354 FQFAKQIGIIILSP-------------------------------LAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HTTTHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHHHhh-------------------------------hHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence             4667788888888                               99999999999889999998888777777666654


Q ss_pred             C
Q psy17630        326 T  326 (372)
Q Consensus       326 ~  326 (372)
                      .
T Consensus       403 ~  403 (412)
T PF01306_consen  403 D  403 (412)
T ss_dssp             S
T ss_pred             C
Confidence            3

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.33  E-value=4.1e-11  Score=126.61  Aligned_cols=124  Identities=8%  Similarity=-0.061  Sum_probs=88.3

Q ss_pred             HHHhhHHHHH-hcCCCCC-ChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        123 VIFYLKRILI-ATNSKII-SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       123 ~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      ...+.|.+.. ..|.+.. ..+++.+...++.+++.+++|+++||+++++.+.++.++.+++.+++....          
T Consensus       251 ~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~----------  320 (1146)
T PRK08633        251 AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP----------  320 (1146)
T ss_pred             HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh----------
Confidence            3445555554 4588887 888999999999999999999999999999888877777766665544331          


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                        +.+..++...+++++.+....+ ..+++.+..|++.||+++++.+.+..++.++++.
T Consensus       321 --~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~  376 (1146)
T PRK08633        321 --SLASVLVLFFLFGFSAGLFIVP-LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLA  376 (1146)
T ss_pred             --hHHHHHHHHHHHHHHHHHhhHH-HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHH
Confidence              1233334444444444433333 3477889999999999999999888887766554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.33  E-value=2.5e-10  Score=106.21  Aligned_cols=122  Identities=13%  Similarity=0.026  Sum_probs=80.5

Q ss_pred             HHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccc
Q psy17630        124 IFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG  202 (372)
Q Consensus       124 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (372)
                      .+..+.+.++ +|.++.+.+.......++.++++++.+++.||.++|+.+..+.. .++..+.+...     +       
T Consensus       225 ~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~-----~-------  291 (393)
T PRK11195        225 RFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ-----H-------  291 (393)
T ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH-----h-------
Confidence            3344444443 58889999999999999999999999999999999987777643 23322222111     0       


Q ss_pred             ccHHHHHHHHHHHHhhcccccccceeeeccCCCcch-hhhHHHHHHHHHHHHHHHHHH
Q psy17630        203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV-KGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +.+.......+.+.+.+....+.. +.+.|..|++. +|++.++.+...+++..++..
T Consensus       292 ~~~~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~  348 (393)
T PRK11195        292 SLLPAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLG  348 (393)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHH
Confidence            123233333344444444334444 55677766654 799999999999988888776

>TIGR00898 2A0119 cation transport protein

Probab=99.32  E-value=5.7e-12  Score=121.32  Aligned_cols=154  Identities=13%  Similarity=0.051  Sum_probs=113.6

Q ss_pred             hhHHHHHhcCCC---CCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccc
Q psy17630        126 YLKRILIATNSK---IISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG  202 (372)
Q Consensus       126 ~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (372)
                      +.+.+.++++.+   ..+.++..+...++.+++.++.|+++||+|||++++++.++..++.++.++.            .
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------------~  178 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------------P  178 (505)
T ss_pred             ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc------------c
Confidence            456666777877   7788999999999999999999999999999999999988888877766543            1


Q ss_pred             ccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcc
Q psy17630        203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGS  282 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (372)
                      +.+..++...+.+++.+ +..+....++.|.+|++.|+.+.++......+|..+++.                       
T Consensus       179 ~~~~~~~~r~l~G~~~~-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~-----------------------  234 (505)
T TIGR00898       179 NYTVFLVFRLLVGMGIG-GIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPL-----------------------  234 (505)
T ss_pred             cHHHHHHHHHHHHhhcc-chHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence            23344444444444433 334455588999999999999999887777777777665                       


Q ss_pred             hhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        283 LIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       283 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                              +...+.   +||+.+++.++..++..+.. +++||+.
T Consensus       235 --------~~~~~~---~wr~~~~~~~i~~~~~~~~~-~~~~esp  267 (505)
T TIGR00898       235 --------VAYFIP---DWRWLQLAVSLPTFLFFLLS-WFVPESP  267 (505)
T ss_pred             --------HHHHhh---HHHHHHHHHHHHHHHHHHHH-HhcCCCh
Confidence                    433332   28888888887777666554 4778863

>TIGR00896 CynX cyanate transporter

Probab=99.31  E-value=9.8e-11  Score=107.47  Aligned_cols=126  Identities=13%  Similarity=0.088  Sum_probs=84.9

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      +.....+.|.+.++.|.+..+.+...+...++.+++.++.|++.||+ +||+.+..+.++.+++.+.+...   ..    
T Consensus       213 ~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~----  285 (355)
T TIGR00896       213 YYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA---PM----  285 (355)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh---hh----
Confidence            34556678888888898988999999999999999999999999999 56666666666666665544332   10    


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeecc-CCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGE-LFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                           .... ....+.+.+.+... +.....+.+ ..+++.++...++.+..+.+++.++|.
T Consensus       286 -----~~~~-~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~  340 (355)
T TIGR00896       286 -----HGLW-AWALVLGLGQGGAF-PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPL  340 (355)
T ss_pred             -----hHHH-HHHHHHHHhhhhHh-HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 1111 12233333333222 222233343 344567788899988888899999998

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.31  E-value=4.8e-11  Score=113.79  Aligned_cols=127  Identities=13%  Similarity=0.022  Sum_probs=75.9

Q ss_pred             HhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccccc
Q psy17630        125 FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLG  204 (372)
Q Consensus       125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (372)
                      .+.+++.+....+....+.......+..+++.++.++++||+|||+.+.++..+..++.+...........       ..
T Consensus       252 ~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  324 (473)
T PRK10429        252 GFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPH-------NA  324 (473)
T ss_pred             hheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCch-------hH
Confidence            34444444332233444556666678889999999999999999999988877666555443221111111       12


Q ss_pred             HHHHHHHHHHHHhhcccccccceeeeccCCC-----cchh--hhHHHHHHHHHHHHHHHHHH
Q psy17630        205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFT-----PDVK--GLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~r--~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +..++...+.+.+.+... ...+++++|..+     +.+|  |...+.......++..+++.
T Consensus       325 ~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~  385 (473)
T PRK10429        325 LLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAF  385 (473)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence            333333333434433333 444577888854     3333  66778888888888888776

>PRK15075 citrate-proton symporter; Provisional

Probab=99.30  E-value=9.2e-11  Score=110.70  Aligned_cols=150  Identities=16%  Similarity=0.089  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHH-HHH-----HHHHHHHHHHHHHHHhhcCCcchhhHhhHH
Q psy17630        105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQ-NIV-----GFIQVIMTFFSSLLVDKAGRRPLLLISDIC  178 (372)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~-----~~~~~~~~~~~g~l~dr~grr~~~~~~~~~  178 (372)
                      .....++..+........+....|.+.++++.+..+.+... +..     .+...++.++.|+++||+|||+.++.+.++
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~   95 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence            34444455555555567788899999999987776654332 221     222346889999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHH
Q psy17630        179 MAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVV  258 (372)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~  258 (372)
                      ..++.+++++......-.    .......++...+.+.+.+...... ..+++|.+|+++|++++++.....+++..+++
T Consensus        96 ~~~~~~l~~~~~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~-~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         96 MASGTLLIAFVPGYATIG----LAAPLLVLLGRLLQGFSAGVELGGV-SVYLAEIATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHhCCcHHHHH----HHHHHHHHHHHHHhhccccccHHHH-HHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence            888888776541100000    0000122334444444444333333 37889999999999999998877776666555


Q ss_pred             H
Q psy17630        259 K  259 (372)
Q Consensus       259 ~  259 (372)
                      .
T Consensus       171 ~  171 (434)
T PRK15075        171 L  171 (434)
T ss_pred             H
Confidence            4

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.30  E-value=1.9e-10  Score=106.49  Aligned_cols=188  Identities=14%  Similarity=0.081  Sum_probs=126.7

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcC-CCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATN-SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  169 (372)
                      +..+++|+|+...-++..+....     .......|.+.++++.| .+....+...++..+.+++.....+++..|+|-|
T Consensus       199 ~~~~llk~~~~~~Fll~~~l~~~-----~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~  273 (400)
T PF03825_consen  199 DALKLLKNPRFLVFLLAAFLIGI-----SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK  273 (400)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            34678888754433222222222     24455667778888887 6777778888888899999999999999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHH----HHHHHhhcccccccceeeeccCCCcchhhhHHHH
Q psy17630        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL----AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGV  245 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  245 (372)
                      ++++++.+..++=..+++..    .+       +.+......    .+.+..++..+.... .|+.+..|++.|++++++
T Consensus       274 ~ll~~a~~~~~vR~~l~a~~----~~-------~~~~~~~~~~l~q~lhG~tf~~~~~a~~-~yi~~~~p~~~~at~Q~l  341 (400)
T PF03825_consen  274 WLLLLALVAYAVRWLLYAYF----SD-------PWPFIVALQLLGQLLHGLTFGLFHAASV-RYIDRIAPPELRATAQGL  341 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHh----cC-------CcHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHhCCccchHHHHHH
Confidence            99999988888776665433    00       112222222    235555554444444 788999999999999999


Q ss_pred             HHHH-HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccch------hhHHHHHHHHHHHhh
Q psy17630        246 ICIL-GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGV------AFGTFAVYCIIGTFF  318 (372)
Q Consensus       246 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~  318 (372)
                      .+.. .++|+.++..                               +.+.+.+..|.+.      .+.+.+++.++..++
T Consensus       342 ~~~~~~Glg~~iG~~-------------------------------igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~  390 (400)
T PF03825_consen  342 YSALSFGLGGAIGSL-------------------------------IGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL  390 (400)
T ss_pred             HHHHHhhHHHHHHHH-------------------------------HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            8765 5678888888                               8888888876553      344455555555555


Q ss_pred             hheeccCC
Q psy17630        319 VYFVVPET  326 (372)
Q Consensus       319 ~~~~~~e~  326 (372)
                      .+++.||+
T Consensus       391 f~~~fk~~  398 (400)
T PF03825_consen  391 FVILFKPK  398 (400)
T ss_pred             HHhhccCC
Confidence            55555554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.30  E-value=6.1e-11  Score=110.38  Aligned_cols=120  Identities=11%  Similarity=0.011  Sum_probs=92.7

Q ss_pred             HHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccc
Q psy17630        124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL  203 (372)
Q Consensus       124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (372)
                      ....+...++.+.+..+.++......+...+..+++|+++||+|||++++.+.++.+++.+.+....             
T Consensus        23 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~-------------   89 (393)
T PRK11195         23 LFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI-------------   89 (393)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH-------------
Confidence            3444555677787888889999999999999999999999999999999999988877766543320             


Q ss_pred             cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      . . +....+.+.+.+ ...|...+++.|++|+++|++++++......++..++|.
T Consensus        90 ~-~-~~~r~l~G~~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~  142 (393)
T PRK11195         90 H-P-LLAYGLVGIGAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTV  142 (393)
T ss_pred             H-H-HHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0 1 233333443333 344565688999999999999999999998888899988

>PRK09952 shikimate transporter; Provisional

Probab=99.30  E-value=9.9e-11  Score=110.56  Aligned_cols=149  Identities=9%  Similarity=-0.025  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHhhchHHHHHhhHHHHH-hc--CCCCCChhhHH-----HHHHHHHHHHHHHHHHHHhhcCCcchhhHhh
Q psy17630        105 TIVIVGLLCFLSFSGINVVIFYLKRILI-AT--NSKIISPNYGQ-----NIVGFIQVIMTFFSSLLVDKAGRRPLLLISD  176 (372)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--g~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~  176 (372)
                      .+....+.............+..|.+.. ++  +.++. .+...     ....++..+++++.|+++||+|||+.+..+.
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~  101 (438)
T PRK09952         23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTV  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHH
Confidence            3333333444444334444555554433 33  44444 33332     2344556788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHH
Q psy17630        177 ICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFV  256 (372)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~  256 (372)
                      ++.+++.+++++........    .......+....+.+.+.+..+... ..++.|.+|+++|+...+.......+|..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~-~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l  176 (438)
T PRK09952        102 WMMGIATALIGLLPSFSTIG----WWAPVLLVTLRAIQGFAVGGEWGGA-ALLAVESAPKNKKAFYSSGVQVGYGVGLLL  176 (438)
T ss_pred             HHHHHHHHHHhcCCcHHHHH----HHHHHHHHHHHHHHHhhhcccHHHH-HHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            99998888776651111000    0000123444455555554443333 478899999999999888877777776666


Q ss_pred             HHH
Q psy17630        257 VVK  259 (372)
Q Consensus       257 ~~~  259 (372)
                      ++.
T Consensus       177 ~~~  179 (438)
T PRK09952        177 STG  179 (438)
T ss_pred             HHH
Confidence            554

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.29  E-value=5.3e-11  Score=109.91  Aligned_cols=164  Identities=13%  Similarity=0.006  Sum_probs=110.0

Q ss_pred             hHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH-hhHHHHHHHHHHHHHHHHhhccc
Q psy17630        120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI-SDICMAICIGALGYYFYLLKLDE  197 (372)
Q Consensus       120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  197 (372)
                      ........|.++ ++.|.+..+.++..+...+...+..++.|+++||+|||+.++. +..+..++.+.....        
T Consensus        13 ~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--------   84 (375)
T TIGR00899        13 GALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN--------   84 (375)
T ss_pred             HHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc--------
Confidence            344455566554 5679999999999999999999999999999999999887654 444444444443322        


Q ss_pred             cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhH--HHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLA--LGVICILGSLIEFVVVKTVRHRFTPDVKGLALG  275 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (372)
                          ++.+..++...+.+... ....+....+..|..|++.|+.+  .+.......++..++|.                
T Consensus        85 ----~~~~~l~~~~~~~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~----------------  143 (375)
T TIGR00899        85 ----RNYFLLLVLGVLLSSFA-STANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPP----------------  143 (375)
T ss_pred             ----chHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhh----------------
Confidence                11222233333332222 22334444566777777766644  56666677788888887                


Q ss_pred             hhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        276 VICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                     +.+.+.+..+|+..|++.+.+.++..+..++++||.+
T Consensus       144 ---------------~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       144 ---------------LAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             ---------------HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence                           7777888889999999888877777766665677653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.29  E-value=1.1e-10  Score=111.84  Aligned_cols=153  Identities=12%  Similarity=0.035  Sum_probs=106.5

Q ss_pred             hHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630        120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDE  197 (372)
Q Consensus       120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (372)
                      ++....+++.++ +++|++..+................+++|+++|| +|||++++.+.++.+++.+++.+..    .  
T Consensus        37 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~----~--  110 (500)
T PRK09584         37 YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG----H--  110 (500)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc----c--
Confidence            455666677666 5679888887777766665555666789999999 5999999999888888776654430    0  


Q ss_pred             cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcch--hhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG  275 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (372)
                           ..+...+...+.+.+.+... +...+++.|.+|++.  |..+.++.+...++|+.++|.                
T Consensus       111 -----~~~~l~~~~~l~gig~g~~~-~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~----------------  168 (500)
T PRK09584        111 -----DAGIVYMGMATIAVGNGLFK-ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSML----------------  168 (500)
T ss_pred             -----cHHHHHHHHHHHHHhhhccc-CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHH----------------
Confidence                 11222333334444444333 343477899998643  455788888999999999998                


Q ss_pred             hhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHH
Q psy17630        276 VICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIG  315 (372)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  315 (372)
                                     +.+.+.+..||++.|.+.++...++
T Consensus       169 ---------------i~g~l~~~~g~~~~F~i~~i~~~i~  193 (500)
T PRK09584        169 ---------------ATPWLAAKYGWSVAFALSVVGMLIT  193 (500)
T ss_pred             ---------------HHHHHHHhhCHHHHHHHHHHHHHHH
Confidence                           8888888899999988766544443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.29  E-value=1.3e-11  Score=96.74  Aligned_cols=137  Identities=18%  Similarity=0.240  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhccccccc
Q psy17630        146 NIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPI  225 (372)
Q Consensus       146 ~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (372)
                      ....++..++.++.|++.||+|||+.+..+..+..++.+.....     .       +.+.......+.+.+.+.. .+.
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~-------~~~~~~~~~~~~g~~~~~~-~~~   71 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----S-------NITVLIIARFLQGFGAAFA-LVA   71 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----c-------cHHHHHHHHHHHHHHHHHH-HHh
Confidence            44567788999999999999999999988887777766654332     1       1233334444444443332 334


Q ss_pred             ceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhh
Q psy17630        226 PGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAF  305 (372)
Q Consensus       226 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  305 (372)
                      ...++.|.+|++.|++..++.+....++..+++.                               ..+.+.+..+|+..+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------------------~~~~~~~~~~~~~~~  120 (141)
T TIGR00880        72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPP-------------------------------LGGVLAQFLGWRAPF  120 (141)
T ss_pred             HHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHH-------------------------------hHHHHhcccchHHHH
Confidence            4477899999999999999999999999999998                               777777888888888


Q ss_pred             HHHHHHHHHHHhhhheeccCC
Q psy17630        306 GTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~e~  326 (372)
                      .+.+.+..+..+..+++.||+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880       121 LFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHHHHHHHHHHHhhcCCCC
Confidence            888887777777666555653

>PRK09848 glucuronide transporter; Provisional

Probab=99.28  E-value=8e-11  Score=111.61  Aligned_cols=153  Identities=12%  Similarity=-0.035  Sum_probs=90.7

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  169 (372)
                      +++++++|+.++...+..++....     ........|++.++. |.+.....+......++.+++.++.+++.||+|+|
T Consensus       220 ~~~~l~~n~~f~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~  294 (448)
T PRK09848        220 SLQTLKRNRPLFMLCIGALCVLIS-----TFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK  294 (448)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHH-----HHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            466788887544333332222221     233334455555443 54443333434444566788899999999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc-------hhhhH
Q psy17630        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD-------VKGLA  242 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~  242 (372)
                      +.+.++.++..++.+.+.+.   ..       .+.+.......+.+.+.+... +..+++.+|..|.+       .+|..
T Consensus       295 ~~~~~g~~~~~i~~~~~~~~---~~-------~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~  363 (448)
T PRK09848        295 NTFLIGALLGTCGYLLFFWV---SV-------WSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLT  363 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHc---Cc-------hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHH
Confidence            99999888777766554321   10       112333333334444444333 34446777777643       35888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy17630        243 LGVICILGSLIEFVVVK  259 (372)
Q Consensus       243 ~~~~~~~~~~~~~~~~~  259 (372)
                      .++.+....++..+++.
T Consensus       364 ~~~~~~~~klg~aig~~  380 (448)
T PRK09848        364 YSLFSFTRKCGQAIGGS  380 (448)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            89999888888888776

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.28  E-value=1.4e-10  Score=106.81  Aligned_cols=141  Identities=12%  Similarity=-0.019  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHH
Q psy17630        103 KATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIIS-PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI  181 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  181 (372)
                      +..++.|...++..+  -....+..|.+.++.|++..+ .+.+......+..++.++.|+++||+|-|+++.++.+...+
T Consensus        27 ~~~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl  104 (511)
T TIGR00806        27 VLVLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVC  104 (511)
T ss_pred             HHHHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            344444444444443  235566777888889999999 99999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      ..+++++..            +...+.+...+++.+-+..+  ..+.++...+|+++|+++.++......+|.++++.
T Consensus       105 ~t~L~~fa~------------Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~  168 (511)
T TIGR00806       105 VWLLLLLGT------------SVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSV  168 (511)
T ss_pred             HHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888876651            23445566666666666555  44488899999999999999999999999999998

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PTZ00207 hypothetical protein; Provisional

Probab=99.28  E-value=1.4e-10  Score=111.29  Aligned_cols=164  Identities=9%  Similarity=-0.006  Sum_probs=110.5

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      .+.+..+.+.+.+++|++..+.++....... ...+.++.|++.||+|||+++.++.++..++.+++++......     
T Consensus        43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i-----  116 (591)
T PTZ00207         43 MYAFNLISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI-----  116 (591)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc-----
Confidence            4566778888888899999888887766433 3356667899999999999999999999999888766421100     


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                       ..+.+.+.+...+.+.+.+....... ..+.+.|| +.||++.|+......+|+++.+.                    
T Consensus       117 -~~s~~~l~l~r~l~G~G~~~~~~~~~-~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~--------------------  173 (591)
T PTZ00207        117 -EGSVVRLSVYNGLMTLGCMLFDLGAV-VTVLSVFP-SNRGAVVAIMKTFTGLGSAILGS--------------------  173 (591)
T ss_pred             -cCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHH--------------------
Confidence             01233334444444444332222233 55678887 78999999999999999987665                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheecc
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP  324 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  324 (372)
                                 +...+.. .+|+..+++.+++.++..++.+.+++
T Consensus       174 -----------l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        174 -----------IQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             -----------HHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence                       3333333 34666777777777766665555544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.26  E-value=8.4e-10  Score=103.40  Aligned_cols=207  Identities=12%  Similarity=0.079  Sum_probs=108.3

Q ss_pred             chhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHH
Q psy17630          5 GILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDEL   78 (372)
Q Consensus         5 G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   78 (372)
                      |..+++.++..      ||+.|++.   +++.++..+..++.+||+++.   +++              +.+.       
T Consensus       152 ~~~~g~~lg~~l~~~~gw~~~f~~~---~~~~~i~~~~~~~~lp~~~~~---~~~--------------~~~~-------  204 (413)
T PRK15403        152 APIIGPLSGAALMHFVHWKVLFAII---AVMGLIAFVGLLLAMPETVKR---GAV--------------PFSA-------  204 (413)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHH---HHHHHHHHHHHHHhCCCCccc---cCC--------------CCCh-------
Confidence            44555555543      99999999   777776555556678987530   000              0000       


Q ss_pred             HHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHH
Q psy17630         79 QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTF  157 (372)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~  157 (372)
                             +...++++++++|+..+...+...+     ..........+.|.++++. |++..+.++.......+..+++.
T Consensus       205 -------~~~~~~~~~ll~~~~~~~~~l~~~~-----~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~  272 (413)
T PRK15403        205 -------KSVLRDFRNVFRNRLFLTGAATLSL-----SYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANA  272 (413)
T ss_pred             -------HHHHHHHHHHHcCHHHHHHHHHHHH-----HHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                   0011245677777644432222211     1222345556778777765 88888888888888888888888


Q ss_pred             HHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc
Q psy17630        158 FSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD  237 (372)
Q Consensus       158 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  237 (372)
                      +.+++.++..+++.......+..++.+++........ +      ..+..+....+++.+.+....... .. +..-...
T Consensus       273 l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~-~------~~~~~~~~~~l~~~G~~~~~p~~~-~~-al~~~~~  343 (413)
T PRK15403        273 IVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWP-H------VWLWSVLGTSLYAFGIGLIFPTLF-RF-TLFSNNL  343 (413)
T ss_pred             HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHcc-c------cHHHHHHHHHHHHHHHHHHhHHHH-HH-HhccCCC
Confidence            8887765544444433332333333332222111111 1      111223344444444443332222 11 1111122


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHH
Q psy17630        238 VKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       238 ~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .+|++.++.+.....+...++.
T Consensus       344 ~~G~a~a~~~~~~~~~~~~~~~  365 (413)
T PRK15403        344 PKGTVSASLNMVILMVMAVSVE  365 (413)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHH
Confidence            3688888888877777777666

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.25  E-value=1.1e-10  Score=114.51  Aligned_cols=154  Identities=12%  Similarity=-0.018  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630        105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG  184 (372)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~  184 (372)
                      +++.+.+..+.+...........+.+.++++++..+.+++.+...++..++.++.+++.||+|||+.+.+++++.+++.+
T Consensus        34 ~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l  113 (633)
T TIGR00805        34 FSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF  113 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence            33344434444433334555666777888899999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhhcccc--------------------c----------------cc--c-ccHHHHHHHHHHHHhhccccccc
Q psy17630        185 ALGYYFYLLKLDEK--------------------L----------------VD--G-LGLLPVASLAIYIIVFSVGFGPI  225 (372)
Q Consensus       185 ~~~~~~~~~~~~~~--------------------~----------------~~--~-~~~~~~~~~~~~~~~~~~~~~~~  225 (372)
                      ++++..+.......                    .                ..  . ....+++..++.+++.+. ..+.
T Consensus       114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~-~~~~  192 (633)
T TIGR00805       114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP-IFPL  192 (633)
T ss_pred             HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc-chhc
Confidence            87665322110000                    0                00  0 112333444444444333 3345


Q ss_pred             ceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        226 PGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       226 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      ..+++.|.+|++.|+...++.+....+|..+++.
T Consensus       193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~l  226 (633)
T TIGR00805       193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYL  226 (633)
T ss_pred             CchhhhccCCccccHHHHHHHHHHHHhhhHHHHH
Confidence            5589999999999999999999888888888776

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.25  E-value=2.8e-10  Score=106.93  Aligned_cols=164  Identities=13%  Similarity=0.090  Sum_probs=98.5

Q ss_pred             HHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        121 NVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       121 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      .....+.|.++++ .|++..+.++..+...+...++.++.|+++||+|||++++++..+.++..............    
T Consensus        27 ~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~----  102 (420)
T PRK09528         27 SSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLL----  102 (420)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            3456666666666 79999999999999999999999999999999999999887655544433221111000000    


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCC--cchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT--PDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVI  277 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (372)
                          ...............+....... ....++.+  .+.++..++.......++..++|.                  
T Consensus       103 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~------------------  159 (420)
T PRK09528        103 ----QYNILLGAIVGGIYLGFGFLAGA-GAIEAYIERVSRRSGFEYGRARMWGSLGWALCAF------------------  159 (420)
T ss_pred             ----HHHHHHHHHHHHHHhhhhhccch-hhhhhHHHHHHhhccccchhhHHhhhHHHHHHHH------------------
Confidence                00001111111111121111111 11122222  234566777777778888888887                  


Q ss_pred             hhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630        278 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE  325 (372)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e  325 (372)
                                   +.+.+.+ .+|+.+|++.++++++..++.++..+|
T Consensus       160 -------------~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~  193 (420)
T PRK09528        160 -------------IAGILFN-INPQINFWLGSGSALILLVLLFFAKPD  193 (420)
T ss_pred             -------------HHHHHHh-cCchHhHHHHHHHHHHHHHHHhccccc
Confidence                         7666655 488888888877777666655544444

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.25  E-value=6.1e-10  Score=103.75  Aligned_cols=191  Identities=13%  Similarity=0.011  Sum_probs=107.6

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.|++.   +++.++..++..+++||+|+.    .+ ++                             ++.+.++++.
T Consensus       161 ~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~----~~-~~-----------------------------~~~~~~~~~~  203 (394)
T PRK11652        161 WRACYLFL---LLLGAGVTFSMARWMPETRPA----DA-RR-----------------------------TRVLASYRTL  203 (394)
T ss_pred             hHHHHHHH---HHHHHHHHHHHHHhCCccCcc----cc-ch-----------------------------hHHHHHHHHH
Confidence            99999998   666666555666678887531    00 00                             0012235566


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  174 (372)
                      ++++..+......+...     .+...+..+.+.+.++ .|.+..+.++......++.+++..+.+++.||++|+...  
T Consensus       204 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--  276 (394)
T PRK11652        204 LSNRRFNCYLLMLIGTL-----AGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--  276 (394)
T ss_pred             HcChHHHHHHHHHHHHH-----HHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            67664443332221111     1123334445556665 688888888888888888888999999999999843322  


Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (372)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (372)
                      ......+..+..........       ...+.......+.+.+.+.... ....+..|.+| +.++++.++.+....+++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~  347 (394)
T PRK11652        277 SVICCLLAGLLMWIPGWFGV-------MNVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-YLAGTAGALLGGLQNIGS  347 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcc-ccchHHHHHHHHHHHHHH
Confidence            22222222221111100000       1123333344444444443333 33366678777 578999999998888888


Q ss_pred             HHHHH
Q psy17630        255 FVVVK  259 (372)
Q Consensus       255 ~~~~~  259 (372)
                      .+++.
T Consensus       348 ~~~~~  352 (394)
T PRK11652        348 GLAAL  352 (394)
T ss_pred             HHHHH
Confidence            88887

>PRK10133 L-fucose transporter; Provisional

Probab=99.24  E-value=2.7e-10  Score=107.44  Aligned_cols=130  Identities=12%  Similarity=-0.042  Sum_probs=98.1

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ......+.|.+.+++|.+..+.++..+...++..+++++.|+++||+|||+++..+..+..++.+++....  ..     
T Consensus        42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~--~a-----  114 (438)
T PRK10133         42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA--EI-----  114 (438)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH--hc-----
Confidence            45667788988888899999999999999999999999999999999999999999999988887643211  01     


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                        ++.+..+....+.+.+.+....... .++.|..|.+.|...+++......+|..+++.
T Consensus       115 --~~~~~ll~~r~l~G~g~g~~~~~~~-~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~  171 (438)
T PRK10133        115 --MNYTLFLVGLFIIAAGLGCLETAAN-PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV  171 (438)
T ss_pred             --CCHHHHHHHHHHHHHHHHHHHhhHH-HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence              1233445555555555554444333 56678777777776788888888888888776

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.24  E-value=2.1e-10  Score=121.12  Aligned_cols=163  Identities=12%  Similarity=-0.025  Sum_probs=101.2

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  169 (372)
                      .++.+.+++..+...+...+..+.     ...+..+.|.+.++ +|.+....+++.+...++.+++.++.|+++|+.+++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~  291 (1140)
T PRK06814        217 LLKYAKADKRIWLAILGISWFWLV-----GAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL  291 (1140)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence            456666766444333322222221     23445567777766 488888999999999999999999999999988877


Q ss_pred             chhhHhhHHHHHHHHHHHHHHHHhhc-cc-------cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhh
Q psy17630        170 PLLLISDICMAICIGALGYYFYLLKL-DE-------KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL  241 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  241 (372)
                      +.+..+.++.+++.+.+.+....... ..       -....+.+..++..++++++.+....+. .+++.+..|++.||+
T Consensus       292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~G~  370 (1140)
T PRK06814        292 LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPL-FAALQAWANPAHRAR  370 (1140)
T ss_pred             eeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHH-HHHHHhhCCccccee
Confidence            76666555555444433221000000 00       0000123444444444544444433333 478899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy17630        242 ALGVICILGSLIEFVVVK  259 (372)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~  259 (372)
                      ++|+.++...++..+++.
T Consensus       371 v~g~~~~~~~~~~~ig~~  388 (1140)
T PRK06814        371 VIAANNVLNAAFMVAGTI  388 (1140)
T ss_pred             eeHHHHHHHHHHHHHHHH
Confidence            999999998888888887

>KOG2615|consensus

Probab=99.24  E-value=3.5e-11  Score=105.92  Aligned_cols=109  Identities=14%  Similarity=0.141  Sum_probs=83.7

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHH
Q psy17630        137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII  216 (372)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (372)
                      +..-.+.+.+.+++.+++.++.+|.++||+|||++++++++..++..++.+.+-             ....++.....++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~-------------~F~afv~aR~l~G  132 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR-------------NFAAFVLARFLGG  132 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhhh
Confidence            344567888899999999999999999999999999999999888877766651             2222232122323


Q ss_pred             hhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .+. +.-.+..++++|+++++.|+.+++.......+|-.++|.
T Consensus       133 i~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPm  174 (451)
T KOG2615|consen  133 IFK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPM  174 (451)
T ss_pred             hcc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcch
Confidence            333 333444589999999999999999999999998888887

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.23  E-value=1.1e-10  Score=107.49  Aligned_cols=123  Identities=12%  Similarity=0.098  Sum_probs=80.6

Q ss_pred             HHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        121 NVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       121 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      .....+.|.+.++ .|++..+.+.......+..+++.+++|+++||+|||+.+..+......+..++....  ...    
T Consensus       242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~----  315 (366)
T TIGR00886       242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL--VSP----  315 (366)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC--CCc----
Confidence            3455666767655 488888888888888999999999999999999999887776655555444433220  000    


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHH
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI  253 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~  253 (372)
                        .+.+..+..........+.+.+. .+.+.+|..| +.+|+++|+.+..+++|
T Consensus       316 --~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       316 --LSLAVFIVLFVALFFFSGAGNGS-TFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             --chHHHHHHHHHHHHHHhccccch-hhhcchhhch-hhcccHHHHHHHhccCC
Confidence              01222223333333444444443 4477788887 68999999988777654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.23  E-value=2.3e-10  Score=106.15  Aligned_cols=129  Identities=11%  Similarity=-0.057  Sum_probs=99.3

Q ss_pred             hchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630        118 SGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE  197 (372)
Q Consensus       118 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (372)
                      ........+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+.....        
T Consensus        20 ~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~--------   91 (381)
T PRK03633         20 LAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM--------   91 (381)
T ss_pred             HhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            335567788999999999999999999999999999999999999999999999999988888877765543        


Q ss_pred             cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                          ++.+..++...+.+.+.+... +.....+.+..++++|+++++.......++..+++.
T Consensus        92 ----~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  148 (381)
T PRK03633         92 ----VGFWSWLAWRFVAGIGCAMIW-VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQL  148 (381)
T ss_pred             ----ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                113344444445444443322 222244567788889999999999888999988887

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.23  E-value=4.8e-10  Score=107.05  Aligned_cols=153  Identities=10%  Similarity=0.036  Sum_probs=114.2

Q ss_pred             HHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630        123 VIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (372)
Q Consensus       123 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (372)
                      ....+|.+.++ +|.++...+++.+..+++.++|+++.+++.+|+++++.+..+.++.+++.+.+++.            
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~------------  304 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS------------  304 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc------------
Confidence            34456777654 58788899999999999999999999999999999998888888777776666554            


Q ss_pred             cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG  281 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (372)
                      .+.+.....+++.+.+......... +...+..|.+.||+.+++..+....+..++..                      
T Consensus       305 ~~~~~~~~~l~l~G~~~~~~~~~~~-t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsl----------------------  361 (524)
T PF05977_consen  305 PSFWLALIALFLAGAAWIIANSSLN-TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSL----------------------  361 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHH----------------------
Confidence            1234444444444444443333333 66788999999999999999888888888888                      


Q ss_pred             chhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhh
Q psy17630        282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV  319 (372)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  319 (372)
                               +.+.+.+..|.+..+.+.++..+++.++.
T Consensus       362 ---------l~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  362 ---------LWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             ---------HHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence                     88888898998877766665555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10133 L-fucose transporter; Provisional

Probab=99.22  E-value=5e-10  Score=105.65  Aligned_cols=173  Identities=12%  Similarity=-0.055  Sum_probs=106.6

Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHH-HH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630         92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (372)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  169 (372)
                      .++++++|..+...+.. ++....    ......|.+.+ .+ ..|+++.+.+.......++.+++.++++++.||+|||
T Consensus       251 ~~~ll~~~~~~~~~l~~-~~~~~~----~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~  325 (438)
T PRK10133        251 LSRLARIRHWRWAVLAQ-FCYVGA----QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH  325 (438)
T ss_pred             HHHHHhCchHHHHHHHH-HHHHHH----HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            45677777544333222 222211    22233345544 34 3599999999999999999999999999999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL  249 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  249 (372)
                      +++..+..+..+.+++....     .        ....+..+.+.+.+.+..+. ..+....|.+|++ .+++.++... 
T Consensus       326 ~~l~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~l~glg~~~i~P-~~~s~a~~~~~~~-~~~as~l~~~-  389 (438)
T PRK10133        326 KVLAAYALIAMALCLISAFA-----G--------GHVGLIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIVM-  389 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-----C--------ChHHHHHHHHHHHHHHHHHH-HHHHHHHcccchh-hccchhHHhH-
Confidence            99888866665554433221     0        11123334445555554444 3336667777653 4666666653 


Q ss_pred             HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHH
Q psy17630        250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGT  316 (372)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~  316 (372)
                      ..+++.++|.                               +.+.+.+..| .+..|++.....+...
T Consensus       390 ~~~g~~~~~~-------------------------------i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        390 TIIGGGIVTP-------------------------------VMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             HhccchHHHH-------------------------------HHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            4466777777                               7787878776 5666665444444333

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.22  E-value=1.2e-09  Score=98.21  Aligned_cols=188  Identities=14%  Similarity=0.149  Sum_probs=126.3

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  169 (372)
                      +++|+.+++     .+..+.+..+....|.+....+...+-. ++|++..+..+......+..++|++++|++.||+|-|
T Consensus       244 t~k~i~~~~-----~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k  318 (438)
T COG2270         244 TFKEIRGRK-----NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK  318 (438)
T ss_pred             HHHHHhccc-----chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            455555554     2222233333333456666777776666 6799999999999999999999999999999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL  249 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  249 (372)
                      +++..+.++..+.++...+.   ..         .........+.+.+.+ +.....-.|..++.|+++-+..+|+.+..
T Consensus       319 ~vl~~~lvi~~~~~~~~~~~---~~---------~~~f~i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyalt  385 (438)
T COG2270         319 PVLMIGLVILSIAALYLIFL---EG---------ELDFWILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALT  385 (438)
T ss_pred             eeehHHHHHHHHHHHHHHHc---cc---------cHHHHHHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhh
Confidence            99988877776655543222   10         1122222233333333 33445557889999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhccc-chhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT-GVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                      +...++++|.                               +.+.+.+..|- |..+....++..++.++ +...|+.++
T Consensus       386 gra~S~~gp~-------------------------------lv~v~t~iTg~~r~g~~~i~vll~iGl~~-L~~v~~~~~  433 (438)
T COG2270         386 GRAASFLGPF-------------------------------LVAVITQITGSSRAGVLSIIVLLLIGLLL-LLRVKVPGR  433 (438)
T ss_pred             hhHHHHHHHH-------------------------------HHHHHHHHhcchhhHHHHHHHHHHhhHhh-EEeecCCCC
Confidence            9999999999                               77777766653 33444555555555544 345665533

>KOG2504|consensus

Probab=99.21  E-value=4.7e-11  Score=113.37  Aligned_cols=182  Identities=14%  Similarity=0.207  Sum_probs=128.1

Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCC--cc
Q psy17630         93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR--RP  170 (372)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~  170 (372)
                      .++++++     .++.+.+.......++.....++|.+.++.|++..+...+.++.++..+++.++.|+++|+...  +.
T Consensus       292 ~~ll~~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~  366 (509)
T KOG2504|consen  292 LSLLKDP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV  366 (509)
T ss_pred             HHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence            4677775     4445555555555667888889999999999999999999999999999999999999999884  34


Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHH
Q psy17630        171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG  250 (372)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  250 (372)
                      ...++.+..+++.+.+...     .       ..+..+....+++...+ .+.......+.|+.+.++-..+.|+...+.
T Consensus       367 ~~~~~ll~~gl~~~~~p~~-----~-------~~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~  433 (509)
T KOG2504|consen  367 LFLLTLLIAGLARLFLPFA-----T-------TYVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQ  433 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHh-----c-------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence            4455555555555333332     1       12233333333333333 233344357789999999899999999999


Q ss_pred             HHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhheecc
Q psy17630        251 SLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVP  324 (372)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  324 (372)
                      .++..++|.                               +.+.+.+..+ |...|...+...+++....+ ..+
T Consensus       434 gi~~l~gpP-------------------------------iag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~-~~~  476 (509)
T KOG2504|consen  434 GIGALVGPP-------------------------------IAGLLYDITGNYDHAFYFCGLCFLLSAVLLL-ILR  476 (509)
T ss_pred             HHHHHcCcc-------------------------------cceeeeeccCCeeeehhhcChHHHHHHHHHH-HhH
Confidence            999999999                               8888888877 66677777766666664433 444

>KOG2532|consensus

Probab=99.21  E-value=1.2e-10  Score=109.28  Aligned_cols=150  Identities=12%  Similarity=0.060  Sum_probs=123.3

Q ss_pred             cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHH
Q psy17630        134 TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI  213 (372)
Q Consensus       134 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (372)
                      ++++..+.+++......+.+++.+..|++.||+|-|+++..+.++.+++.++...+...          ..+..++...+
T Consensus        68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~----------~~~~~~~~R~l  137 (466)
T KOG2532|consen   68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI----------GFYLLLVLRFL  137 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh----------cchhhHHHHHH
Confidence            46677888999999999999999999999999999999999999999888887655221          23455666666


Q ss_pred             HHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhH
Q psy17630        214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFD  293 (372)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (372)
                      .+.+.+..+..+. .+.+...|+++|++..++......++.++.-.                               +.+
T Consensus       138 qGl~~g~~~pa~~-~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp-------------------------------~sg  185 (466)
T KOG2532|consen  138 QGLGQGVLFPAIG-SILAKWAPPNERSTFIAILTAGSQLGTIITMP-------------------------------VSG  185 (466)
T ss_pred             hHHHHhHHHhhhh-ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------hHH
Confidence            6666665555444 88899999999999999999999899988887                               888


Q ss_pred             HHHHh-cccchhhHHHHHHHHHHHhhhheeccC
Q psy17630        294 DVERA-FGTGVAFGTFAVYCIIGTFFVYFVVPE  325 (372)
Q Consensus       294 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e  325 (372)
                      .+.+. .||+..|++.++++++..++.+++..|
T Consensus       186 ~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d  218 (466)
T KOG2532|consen  186 LLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD  218 (466)
T ss_pred             HHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            88888 999999999999988887766555544

>KOG0569|consensus

Probab=99.21  E-value=1e-10  Score=108.80  Aligned_cols=145  Identities=14%  Similarity=0.087  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccc
Q psy17630        143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGF  222 (372)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (372)
                      ...++..+++++|+++.++++||+|||..+.++.++..++.+++.+......         ..+.++..++.+...+...
T Consensus        64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~---------~e~li~GR~i~Gl~~gl~~  134 (485)
T KOG0569|consen   64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPS---------FEMLILGRLIVGLACGLST  134 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHHHhHHHH
Confidence            3566788999999999999999999999999998888888877766643332         3456666777766666666


Q ss_pred             cccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHH-hccc
Q psy17630        223 GPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-AFGT  301 (372)
Q Consensus       223 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~  301 (372)
                      ...+ .|+.|+.|.+.||....+......+|..++..+                              ..+.+.. ...|
T Consensus       135 ~~~p-myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~------------------------------~l~~ilGt~~~W  183 (485)
T KOG0569|consen  135 GLVP-MYLTEISPKNLRGALGTLLQIGVVIGILLGQVL------------------------------GLPSLLGTEDLW  183 (485)
T ss_pred             HHHH-HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHH------------------------------ccHHhcCCCcch
Confidence            6555 899999999999998888777777666666430                              3333432 3447


Q ss_pred             chhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        302 GVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                      .+.+.+..+.+++..+. ..++||+.+
T Consensus       184 ~~l~~~~~i~~~~~l~~-l~~~PESPk  209 (485)
T KOG0569|consen  184 PYLLAFPLIPALLQLAL-LPFLPESPK  209 (485)
T ss_pred             HHHHHHHHHHHHHHHHH-HhcCCCCcc
Confidence            65555555555555544 458999743

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.20  E-value=5.8e-10  Score=104.82  Aligned_cols=200  Identities=13%  Similarity=0.091  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHh----hcCCcchhhHh-hHHH
Q psy17630        105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD----KAGRRPLLLIS-DICM  179 (372)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~~~-~~~~  179 (372)
                      ++.........+++ +.....+.+.++++.|.+....+.......+..++..++.|+++|    |+|||+.++.+ .+..
T Consensus         6 li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~   84 (477)
T TIGR01301         6 LLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV   84 (477)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence            33344444444443 456667777788889999999999999999999999999999999    59999998775 4444


Q ss_pred             HHHHHHHHHHHHHhhc--ccccccccc---HHHHHHHHHHHHhhcccccccceeeeccCCCcchh--hhHHHHHHHHHHH
Q psy17630        180 AICIGALGYYFYLLKL--DEKLVDGLG---LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK--GLALGVICILGSL  252 (372)
Q Consensus       180 ~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~~  252 (372)
                      .++.+++.........  .........   +..+..+.+.....+....+.. ++++|+.|+++|  +.+.++.+....+
T Consensus        85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~r-ALiaDl~p~~~~~~~~a~~~~~~~~~l  163 (477)
T TIGR01301        85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCR-AFLADLTGGDARRTRIANAYFSFFMAI  163 (477)
T ss_pred             HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHHHH
Confidence            4444444332111000  000000011   1222222233334444444554 889999998866  5788888888888


Q ss_pred             HHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHH------hcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        253 IEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVER------AFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                      |+.+++.                    +|++....  +.++....      ..+.+..|.+.+++.+++.++..+..+|.
T Consensus       164 G~ilg~~--------------------~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       164 GNVLGYA--------------------AGAYSGLY--KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             HHHHHHH--------------------HHHHHhHH--HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            8877765                    11110000  00000000      01445678888888888888888888886


Q ss_pred             CC
Q psy17630        327 KN  328 (372)
Q Consensus       327 ~~  328 (372)
                      ..
T Consensus       222 ~~  223 (477)
T TIGR01301       222 PL  223 (477)
T ss_pred             CC
Confidence            43

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.19  E-value=4.5e-10  Score=104.62  Aligned_cols=162  Identities=12%  Similarity=0.040  Sum_probs=100.1

Q ss_pred             HHHHHhhHHH-HHhcCCCCCChhhHHHHHHH-HHHHHHHHHHHHHhhcCCcchhh-HhhHHHHHHHHHHHHHHHHhhccc
Q psy17630        121 NVVIFYLKRI-LIATNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAGRRPLLL-ISDICMAICIGALGYYFYLLKLDE  197 (372)
Q Consensus       121 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  197 (372)
                      .......|.+ .+++|.+..+.++..+...+ +...+.+.+++ +||+|||+.++ .+.+...+...+..+.     +  
T Consensus        32 ~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~--  103 (393)
T PRK15011         32 ALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN-----R--  103 (393)
T ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh-----h--
Confidence            4445555554 45679899998888766555 44555555556 99999998754 4444444444333222     0  


Q ss_pred             cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhh--hHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG--LALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG  275 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (372)
                           +.+..++.....+ +.+....+....+..|..+++.|.  ...++.+....++..++|.                
T Consensus       104 -----~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~----------------  161 (393)
T PRK15011        104 -----NYFVLLFVGVFLS-SFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPP----------------  161 (393)
T ss_pred             -----HHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhH----------------
Confidence                 1122222222222 222233444445556666655443  3346777778888999988                


Q ss_pred             hhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        276 VICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                     +.+.+.+..|||..|++.++++++..+..+++.||.+
T Consensus       162 ---------------i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        162 ---------------LAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             ---------------HHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence                           8888888899999998888887777776666677754

>PRK09669 putative symporter YagG; Provisional

Probab=99.18  E-value=4.8e-10  Score=106.13  Aligned_cols=107  Identities=11%  Similarity=0.002  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhccc
Q psy17630        142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVG  221 (372)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (372)
                      ........+..+++.+++++++||+|||+.+..+.++..+..+...+.   ..+       +.+..++...+.+.+.+. 
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~i~g~~~~~-  335 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI---PPS-------NVWLIFALNILFNFIQNL-  335 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---Ccc-------hHHHHHHHHHHHHHHHHH-
Confidence            344455567778888999999999999999888766555433322111   111       123333333444444443 


Q ss_pred             ccccceeeeccCCCc-------chhhhHHHHHHHHHHHHHHHHHH
Q psy17630        222 FGPIPGVMMGELFTP-------DVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       222 ~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      ..+..+++++|..+.       +..|...++.+....++..+++.
T Consensus       336 ~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~  380 (444)
T PRK09669        336 TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGA  380 (444)
T ss_pred             HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHH
Confidence            335666888888752       22366778888888888888876

>TIGR00901 2A0125 AmpG-related permease

Probab=99.18  E-value=2.5e-10  Score=104.80  Aligned_cols=163  Identities=15%  Similarity=0.059  Sum_probs=107.5

Q ss_pred             HHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-----CCcchh-hHhhHHHHHHHHHHHHHHHHhhc
Q psy17630        122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRPLL-LISDICMAICIGALGYYFYLLKL  195 (372)
Q Consensus       122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~~  195 (372)
                      ......|.+.++.|.+..+.++.... .+...+ .+++|+++||+     |||+.+ +.+.++.++....+++.   ...
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~---~~~   80 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL---VPS   80 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC---Ccc
Confidence            44566788889999999998888655 344444 88999999998     898874 55555555554444322   000


Q ss_pred             cccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630        196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG  275 (372)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (372)
                            ...+.......+...+ .....+...+++.|.+|+++|+.+.++......+|..+++.                
T Consensus        81 ------~~l~~l~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~----------------  137 (356)
T TIGR00901        81 ------TDLPLLAGLAFLIAFF-SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGS----------------  137 (356)
T ss_pred             ------hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHH----------------
Confidence                  1112222222222222 22233444478899999999999999998888888888887                


Q ss_pred             hhhhhcchhhhhhhhhhHHHHHhcc--------cchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        276 VICILGSLIEFVVVKTFDDVERAFG--------TGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                     +...+....+        ||..|++.+++.++..+..++..||++
T Consensus       138 ---------------l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       138 ---------------LALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             ---------------HHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence                           5555655666        999998888777766655444456643

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.18  E-value=2.2e-09  Score=101.13  Aligned_cols=193  Identities=12%  Similarity=0.120  Sum_probs=121.3

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+...+.   +++..+..++..+..+|.++      +.++                         ++++.+-++.++++
T Consensus       176 ~~~~~~v~---~iv~~v~~~i~~~~~ke~~~------~~~~-------------------------~~~~~~~~~~~~~~  221 (428)
T PF13347_consen  176 YRWMALVL---AIVGLVFFLITFFFVKERSV------EVTE-------------------------QEKKISLRDSLRSL  221 (428)
T ss_pred             HHHHHHHH---HHHHHHHhhhhhheeeeccc------cccc-------------------------cccccccccchhhh
Confidence            77777777   77777766677777777211      0000                         00111223456778


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  174 (372)
                      ++||.+++.....++ ....    ........+++.++. |.+ ...+.......+..+++.+++++++||+|||+.+..
T Consensus       222 ~~nr~~~~l~~~~~~-~~~~----~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~  295 (428)
T PF13347_consen  222 FRNRPFRILLLAFFL-QWLA----FALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII  295 (428)
T ss_pred             cccchHHHHHHHHHH-HHhh----hhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence            888754433333222 2222    222233344444443 423 456677778889999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc-------hhhhHHHHHH
Q psy17630        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD-------VKGLALGVIC  247 (372)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~~~~~  247 (372)
                      +..+.+++.++..+...          .+.+..++...+.+.+.+... ...+++.+|+.+.+       ..|...++.+
T Consensus       296 ~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~  364 (428)
T PF13347_consen  296 GLLLAALGFLLLFFLGP----------GSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNS  364 (428)
T ss_pred             hHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhh
Confidence            99998888777654411          124555555556666655444 56668889998743       2377888888


Q ss_pred             HHHHHHHHHHHH
Q psy17630        248 ILGSLIEFVVVK  259 (372)
Q Consensus       248 ~~~~~~~~~~~~  259 (372)
                      +...++..+++.
T Consensus       365 ~~~k~~~~la~~  376 (428)
T PF13347_consen  365 FFIKIGQGLAGA  376 (428)
T ss_pred             hhhHHHHHHHHH
Confidence            888888877776

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.18  E-value=4.9e-10  Score=104.66  Aligned_cols=168  Identities=16%  Similarity=0.151  Sum_probs=116.5

Q ss_pred             HhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-----CCcc-hhhHhhHHHHHHHHHHHHH
Q psy17630        116 SFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRP-LLLISDICMAICIGALGYY  189 (372)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~-~~~~~~~~~~~~~~~~~~~  189 (372)
                      +.........-+|.++++.|++.++.+++......  .+..+++|+++||+     |||+ .+..+.++.+++...+.+.
T Consensus        11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~   88 (402)
T PRK11902         11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC   88 (402)
T ss_pred             HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence            33345667778899999999999999998776665  58889999999999     8876 6777777776666654332


Q ss_pred             HHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcc
Q psy17630        190 FYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDV  269 (372)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (372)
                         ..      ..+.+.......+.. .......+...+++.|.+|+++|+++.++......++..+++.          
T Consensus        89 ---~~------~~~~~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~----------  148 (402)
T PRK11902         89 ---PP------HAALWPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGG----------  148 (402)
T ss_pred             ---Cc------cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhH----------
Confidence               00      011222232323333 2233344455588899999999999999998887888888777          


Q ss_pred             cccchhhhhhhcchhhhhhhhhhHHHHHh-cccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        270 KGLALGVICILGSLIEFVVVKTFDDVERA-FGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                           +...+.+. .||+..|++.+++.++..+.. ++.||++
T Consensus       149 ---------------------l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~  185 (402)
T PRK11902        149 ---------------------LALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEPE  185 (402)
T ss_pred             ---------------------HHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCc
Confidence                                 66666664 499999988888776655443 3566653

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.17  E-value=1.8e-09  Score=99.71  Aligned_cols=153  Identities=18%  Similarity=0.117  Sum_probs=97.8

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  169 (372)
                      ++..+++|++++...+..++....     .+.......++.+. .|.+.............+.+++.++..++++|+|||
T Consensus       228 ~~~~~~~Nrp~~~~l~~~l~~~~~-----~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk  302 (467)
T COG2211         228 SFLLIFKNRPLLLLLLMNLLLFIA-----FNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK  302 (467)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHH-----HHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH
Confidence            455677887555444433222222     22223333333332 254555666677777777888899999999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCc-----chh--hhH
Q psy17630        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-----DVK--GLA  242 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-----~~r--~~~  242 (372)
                      +++..+.++..++.+++.+.   ..       .+....++..++.+.+.+ ...+++|++++|..+.     .+|  |..
T Consensus       303 ~~~~~~~~~~~i~~~~~~f~---~~-------~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~  371 (467)
T COG2211         303 KLFLIGLLLLAVGYLLLYFT---PA-------GSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIV  371 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhh---cC-------cchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhH
Confidence            99999988888888776444   11       123344444444444544 3456888999988652     333  777


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy17630        243 LGVICILGSLIEFVVVK  259 (372)
Q Consensus       243 ~~~~~~~~~~~~~~~~~  259 (372)
                      .+...++..++.+++..
T Consensus       372 ~s~~tF~~K~g~ala~~  388 (467)
T COG2211         372 YSGMTFFRKLGLALAGF  388 (467)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888888888888776

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.16  E-value=2.2e-09  Score=100.98  Aligned_cols=153  Identities=21%  Similarity=0.229  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhHHHHHHHHHHHHHHHHhhcc-------cccccc--ccHHHHHHHHH
Q psy17630        144 GQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICIGALGYYFYLLKLD-------EKLVDG--LGLLPVASLAI  213 (372)
Q Consensus       144 ~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~  213 (372)
                      ......+...+.+++..++.+|+|+ |....++.++.++++....+.....++.       ....+.  ..+..++.+..
T Consensus       310 ~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  389 (477)
T TIGR01301       310 GLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAI  389 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHH
Confidence            3445556666777788899999995 6776888888888777765442211100       000000  02445555555


Q ss_pred             HHHhhcccccccceeeeccCCCcch--hhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhh
Q psy17630        214 YIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKT  291 (372)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (372)
                      .++..+.. ..++|+++++..+++.  .|..+|+.|.+..+...+...                               .
T Consensus       390 ~Gi~~A~~-~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl-------------------------------~  437 (477)
T TIGR01301       390 LGIPLAIT-YSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSL-------------------------------G  437 (477)
T ss_pred             hhHHHHHH-HHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHH-------------------------------H
Confidence            55555543 3578889999988544  488999999888877777776                               4


Q ss_pred             hHHHHHhcc--cchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        292 FDDVERAFG--TGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       292 ~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                      .+.+.+..|  ....+.+.++..+++++.+++.+|+++.
T Consensus       438 ~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       438 SGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            554444444  2235666677777888888878887643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0255|consensus

Probab=99.16  E-value=2.9e-10  Score=109.94  Aligned_cols=146  Identities=16%  Similarity=0.113  Sum_probs=112.9

Q ss_pred             cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHH
Q psy17630        134 TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI  213 (372)
Q Consensus       134 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (372)
                      ...+.....+..++..++..+|+++.|.++||+|||++++.++++..++.+..+++            .+.+..++..++
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a------------~~~~~~~~~Rfl  180 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA------------PNYWMFLIFRFL  180 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh------------CcHHHHHHHHHH
Confidence            35566777888999999999999999999999999999999999999998877666            223444555555


Q ss_pred             HHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhH
Q psy17630        214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFD  293 (372)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (372)
                      .+++.+ +...+.+.+..|+++++.|+.+..+ ......++.+++.                               ...
T Consensus       181 ~G~~~~-~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~-------------------------------~~a  227 (521)
T KOG0255|consen  181 SGFFGS-GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPA-------------------------------GAA  227 (521)
T ss_pred             HHhhcc-chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHH-------------------------------HHH
Confidence            544443 4445666889999999999999999 7777777777776                               666


Q ss_pred             HHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        294 DVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       294 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                      ++..  +||+.+++......+..++ +++.||++
T Consensus       228 ~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  228 YITR--DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             HHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            6655  8998888888877777665 44566864

>PRK11462 putative transporter; Provisional

Probab=99.15  E-value=1.9e-09  Score=102.30  Aligned_cols=108  Identities=11%  Similarity=-0.014  Sum_probs=60.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcc
Q psy17630        141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV  220 (372)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (372)
                      .+.......+..+++.+++++++||+|||+.+..+..+..+..+++.+.   ...       +.........+.+.+. .
T Consensus       265 ~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~l~g~~~-~  333 (460)
T PRK11462        265 FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV---PMQ-------ASITMFVFIFVIGVLH-Q  333 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---chh-------HHHHHHHHHHHHHHHH-H
Confidence            3455667778888999999999999999988765544333322222111   110       1112222223333332 2


Q ss_pred             cccccceeeeccCCC-----cchh--hhHHHHHHHHHHHHHHHHHH
Q psy17630        221 GFGPIPGVMMGELFT-----PDVK--GLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       221 ~~~~~~~~~~~e~~p-----~~~r--~~~~~~~~~~~~~~~~~~~~  259 (372)
                      ...+..+++++|..+     +..|  |...+...+...++..+++.
T Consensus       334 ~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~  379 (460)
T PRK11462        334 LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGA  379 (460)
T ss_pred             HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            233444566777755     2344  44455555777777777665

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.14  E-value=1.2e-09  Score=104.58  Aligned_cols=164  Identities=14%  Similarity=0.110  Sum_probs=111.3

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-----CCcch-hhHhhHHHHHHHHHHHHHHHHh
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRPL-LLISDICMAICIGALGYYFYLL  193 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~-~~~~~~~~~~~~~~~~~~~~~~  193 (372)
                      .......+|.++++.|.+..+.+........  .++.+++|+++||+     |||+. +..+.+..+++...+++.   .
T Consensus        28 ~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~---~  102 (491)
T PRK11010         28 LALTSGTLQAWMTVENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL---E  102 (491)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc---C
Confidence            4456667788888888888787776333322  26889999999999     99986 556666665655554432   0


Q ss_pred             hccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccc
Q psy17630        194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLA  273 (372)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (372)
                      .      ..+.+.......+.+.+.+ ...+...++..|.+|+++|+.+.++......++..+++.              
T Consensus       103 ~------~~~l~~l~~~~~l~~~~~a-~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~--------------  161 (491)
T PRK11010        103 P------GTQLRWLAALAVVIAFCSA-SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGG--------------  161 (491)
T ss_pred             C------cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH--------------
Confidence            0      0112233333333333333 333444588899999999999999999988888888887              


Q ss_pred             hhhhhhhcchhhhhhhhhhHHHHH-hcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        274 LGVICILGSLIEFVVVKTFDDVER-AFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                       ....+.+ ..|||..|++.+++.++..+..+ +.||+.
T Consensus       162 -----------------l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~  198 (491)
T PRK11010        162 -----------------LALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPT  198 (491)
T ss_pred             -----------------HHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence                             6666767 46999999998887777655544 467753

>TIGR00896 CynX cyanate transporter

Probab=99.13  E-value=3.5e-10  Score=103.82  Aligned_cols=124  Identities=12%  Similarity=-0.025  Sum_probs=91.7

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      ......+|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+.. ..     +     
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-----~-----   85 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-----P-----   85 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-----c-----
Confidence            344567888899999999999999999999999999999999999999999998877766555443 11     1     


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                        +.+..++...+.+.+.+...... ..++.|.+| ++|+++.++.+....++..+++.
T Consensus        86 --~~~~l~~~~~~~g~g~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~  140 (355)
T TIGR00896        86 --GTALLFAGTALIGVGIAIINVLL-PSLIKRDFP-QRVGLMTGLYSMALMGGAALAAA  140 (355)
T ss_pred             --cHHHHHHHHHHHHHHHHHHhccc-hHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHH
Confidence              12333444444444444322222 255677776 67999999999888888888887

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG3764|consensus

Probab=99.10  E-value=2.2e-10  Score=101.63  Aligned_cols=152  Identities=13%  Similarity=0.079  Sum_probs=126.2

Q ss_pred             cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHH
Q psy17630        134 TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI  213 (372)
Q Consensus       134 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (372)
                      .+-...+.+++.....+.+++.+++.|.+.||+|+|..+++|++++....+++++.            ...+..++...+
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg------------~sy~~l~vAR~L  168 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG------------NSYPMLFVARSL  168 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc------------chhHHHHHHHHH
Confidence            35567889999999999999999999999999999999999999999999887765            223455666667


Q ss_pred             HHHhhcccccccceeeeccCCCcch-hhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhh
Q psy17630        214 YIIVFSVGFGPIPGVMMGELFTPDV-KGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTF  292 (372)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (372)
                      -+.+.++... ...++++|.||.+. |+.++|+.-.+..+|-.++|.                               ..
T Consensus       169 QgvgsA~~~t-sglamlAd~f~~d~er~~vmGialgfislG~lvgPp-------------------------------fG  216 (464)
T KOG3764|consen  169 QGVGSAFADT-SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPP-------------------------------FG  216 (464)
T ss_pred             hhhhHHHHHh-hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCC-------------------------------cc
Confidence            6666665544 33478899999876 699999999999999999998                               88


Q ss_pred             HHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCCC
Q psy17630        293 DDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNK  329 (372)
Q Consensus       293 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  329 (372)
                      +.+++..|.+.+|++++.++++...+-++.++.++.+
T Consensus       217 GilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~  253 (464)
T KOG3764|consen  217 GILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD  253 (464)
T ss_pred             cchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence            8999999999999999999999988877666655433

>KOG0254|consensus

Probab=99.09  E-value=6.4e-10  Score=107.15  Aligned_cols=141  Identities=12%  Similarity=0.119  Sum_probs=110.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcc
Q psy17630        141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV  220 (372)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (372)
                      .+++.+...++..++++++|+++|++|||+.++++.++..++.++.+.+.            +.....+...+.+++.+.
T Consensus        91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~------------~~~~l~~GR~l~G~g~G~  158 (513)
T KOG0254|consen   91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP------------SWYQLIVGRILTGLGVGG  158 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHhccchhh
Confidence            37999999999999999999999999999999999999999999887762            345666777777766665


Q ss_pred             cccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHh--
Q psy17630        221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA--  298 (372)
Q Consensus       221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  298 (372)
                      ....++ .|.+|..|++.||...+.......+|..++ +                               ..+.....  
T Consensus       159 ~~~~~p-iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~-------------------------------~~~~~~~~~~  205 (513)
T KOG0254|consen  159 ASVLAP-VYISEIAPAHIRGTLVSLYQLFITIGILLG-Y-------------------------------CINYGTSKVY  205 (513)
T ss_pred             hhhcch-hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-H-------------------------------HHhhhhccCC
Confidence            555555 899999999999999888877766554444 4                               44444443  


Q ss_pred             cccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        299 FGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       299 ~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                      .+||..+.+..+.+++..+. .++.||+.
T Consensus       206 ~~Wr~~~~~~~i~~~~~~~~-~~~~pesp  233 (513)
T KOG0254|consen  206 AGWRIPLGLALIPAVILALG-MLFLPESP  233 (513)
T ss_pred             ccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence            48998887777777777766 66888864

>KOG2533|consensus

Probab=99.09  E-value=1.2e-09  Score=102.91  Aligned_cols=153  Identities=16%  Similarity=0.031  Sum_probs=117.9

Q ss_pred             HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHH
Q psy17630        132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL  211 (372)
Q Consensus       132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (372)
                      ++.++...+.+...+++.++.+++.+.++.+.||++-.+.+....++.++..++....            .+.+..++..
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~------------~s~~~~ialr  141 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV------------HSFPGLIALR  141 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHH
Confidence            4556777889999999999999999999999999995555544444433333222111            1245667777


Q ss_pred             HHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhh
Q psy17630        212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKT  291 (372)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (372)
                      ++.+...+.++.+.. .+++..|.+++|++-+++.+....+|+++++.                               +
T Consensus       142 ~llGl~es~~wP~~~-~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggl-------------------------------i  189 (495)
T KOG2533|consen  142 FLLGLFESGGWPGVV-AILGNWYGKSERGLRMGIWYASASLGNIFGGL-------------------------------I  189 (495)
T ss_pred             HHHHHHhcccchHHH-HHHHhhcChhhhhhhHHHHHHhcchhhHHHHH-------------------------------H
Confidence            788878777777666 88899999999999999999999999988887                               4


Q ss_pred             hHHHH------HhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        292 FDDVE------RAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       292 ~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                      ...+.      ...|||+.|++-+++.++..+++++++|+...
T Consensus       190 A~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  190 AYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            44432      34689999999999999999999989987544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.09  E-value=5.5e-09  Score=91.96  Aligned_cols=179  Identities=16%  Similarity=0.136  Sum_probs=120.5

Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-CCcc
Q psy17630         92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRP  170 (372)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~  170 (372)
                      -..++|+|.-|     ...+++..+...++....|+|.++.|.|+|..+.+.+.....+.+++.++....+.+|. .+|+
T Consensus       201 ~~~vw~~~~aW-----~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~  275 (395)
T COG2807         201 VRKVWRSPLAW-----QVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP  275 (395)
T ss_pred             ccccccCchhH-----HHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence            34567777333     33344555555688899999999999999999999999999999999999999999975 4566


Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHH
Q psy17630        171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICIL  249 (372)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~  249 (372)
                      ..+....++.++.+.+.+.  ..           ...+....+.+.+.+..+ +...+.+.+-. .++.-+.-.++.+.+
T Consensus       276 ~~~~~~~~~l~G~~G~~~~--P~-----------~~~~lw~~llG~G~G~~F-~laL~li~~rs~~a~~Aa~LSgmaQg~  341 (395)
T COG2807         276 LVVLALLLMLVGLVGLLLA--PG-----------QLPILWALLLGLGQGGAF-PLALTLILLRSSDAAIAAALSGMAQGV  341 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHh--hh-----------hHHHHHHHHHhCccchHH-HHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence            6666666666666555433  11           111222334444433332 23323444443 344457778888889


Q ss_pred             HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhh
Q psy17630        250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~  320 (372)
                      +++....+|.                               +++.+.|..| |+.+...++...++..+..+
T Consensus       342 GYllAa~GP~-------------------------------l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         342 GYLLAAFGPW-------------------------------LFGFLHDATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             hHHHHhhhhh-------------------------------hHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence            9999999999                               9999998876 65566666666555555544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.09  E-value=6.7e-09  Score=97.11  Aligned_cols=147  Identities=12%  Similarity=-0.005  Sum_probs=85.8

Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcC--CCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630         92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATN--SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (372)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  169 (372)
                      .++++++|..+.. .+..+++...+    .....+.+.+.++.+  .+................+|.++++++.||+++|
T Consensus       225 ~~~~~~~~~~~~~-~l~~f~yvg~e----~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~  299 (410)
T TIGR00885       225 LSRLARIRHYREG-VIAQFFYVGVQ----IMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH  299 (410)
T ss_pred             HHHHHhChhHHHH-HHHHHHHHHHH----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            3456666644432 22222222222    233456666666543  2323334445555677889999999999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL  249 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  249 (372)
                      +.+.+...+..++.++....    .         .........+.+.+.+..+ |..+....+..+++.+..+..+... 
T Consensus       300 ~~l~i~~~~~~~~~ll~~~~----~---------~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~-  364 (410)
T TIGR00885       300 KVLMAYAIIGMALCLGSIFA----G---------GHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMA-  364 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHc----C---------ChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHH-
Confidence            98888777777666554332    0         1122344444445555555 5555777888876655444444333 


Q ss_pred             HHHHHHHHHH
Q psy17630        250 GSLIEFVVVK  259 (372)
Q Consensus       250 ~~~~~~~~~~  259 (372)
                       .+|+++.|.
T Consensus       365 -~~Gga~~p~  373 (410)
T TIGR00885       365 -IIGGGIVPP  373 (410)
T ss_pred             -HhccchHHH
Confidence             388888888

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.07  E-value=3.2e-09  Score=112.18  Aligned_cols=145  Identities=15%  Similarity=0.049  Sum_probs=96.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhc
Q psy17630        140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFS  219 (372)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (372)
                      ..++..++..+..++.++++|+++||+|||+++.....+..+........+..  .       +.+.+++..++.+.+.+
T Consensus        53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~--~-------s~~~l~~~~~l~gi~~a  123 (1140)
T PRK06814         53 LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL--N-------SVPLLFAALFLMGIHSA  123 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH--h-------hHHHHHHHHHHHHHHHH
Confidence            34566667788889999999999999999997644222222222211111111  1       13444555555544444


Q ss_pred             ccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhc
Q psy17630        220 VGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF  299 (372)
Q Consensus       220 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (372)
                       ...+...+++.|++|++.|+.++++.++...++..++|.                               +.+.+....
T Consensus       124 -~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~-------------------------------l~g~l~~~~  171 (1140)
T PRK06814        124 -LFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTI-------------------------------IGGLATISG  171 (1140)
T ss_pred             -hhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHH-------------------------------HHHHHHhcc
Confidence             345566689999999999999999999999999999999                               888888888


Q ss_pred             ccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        300 GTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       300 g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                      +|+..|.....+.++. ++..+++|++
T Consensus       172 ~~~~~~~~~~~~~~~~-~~~~~~~~~~  197 (1140)
T PRK06814        172 NFVILVALLMGIAVLG-WLASLFIPKT  197 (1140)
T ss_pred             ccHHHHHHHHHHHHHH-HHHHhhCCCC
Confidence            9987773333333333 3334456654

>KOG2504|consensus

Probab=99.07  E-value=1.9e-09  Score=102.42  Aligned_cols=179  Identities=12%  Similarity=0.039  Sum_probs=132.9

Q ss_pred             hhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHH
Q psy17630        101 TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA  180 (372)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~  180 (372)
                      +-|......++.........+.+..+.+.+.++++.+..+.++..++......+..++.+.+.||+|.|.+.+.|.++..
T Consensus        43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~  122 (509)
T KOG2504|consen   43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA  122 (509)
T ss_pred             eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence            33444444444433333334455566777788888888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccccccHH-HHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        181 ICIGALGYYFYLLKLDEKLVDGLGLL-PVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +++++..++.            +.|. .+..-.+.+.++++.+.|.. ..+...| .++|+.++|+......+|.++.|.
T Consensus       123 ~g~~lssF~~------------~i~~l~lt~gvi~G~G~~~~~~pai-viv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~  188 (509)
T KOG2504|consen  123 LGLLLSSFAT------------SLWQLYLTFGVIGGLGLGLIYLPAV-VILGTYF-EKKRALATGIAVSGTGVGTVVFPP  188 (509)
T ss_pred             HHHHHHHHHh------------hHHHHHHHHHHHhhccchhhhcchh-hhhhhHh-HHHHHHHHhhhhccCCcceeeHHH
Confidence            9998877662            1222 23333344445555555555 4555555 588999999999999999999998


Q ss_pred             hhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheecc
Q psy17630        260 TVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP  324 (372)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  324 (372)
                                                     +...+.+..|||..+++++.+.+-..+......|
T Consensus       189 -------------------------------l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  189 -------------------------------LLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             -------------------------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence                                           8899999999999999999888776666654555

>TIGR00788 fbt folate/biopterin transporter

Probab=99.07  E-value=9.3e-10  Score=104.57  Aligned_cols=125  Identities=8%  Similarity=-0.054  Sum_probs=89.3

Q ss_pred             HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHH
Q psy17630        132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL  211 (372)
Q Consensus       132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (372)
                      ...|+++.+.+......+++.+++..+.+++.+|++.|+++.++.++.+++.+............  ......+......
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~--~gi~~~~~~~~~~  358 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLA--FGISDEVFVLGDS  358 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccc--cCCCCeeeeeehh
Confidence            34699999999999999999999999999999999999999988888777664432110000000  0001122223333


Q ss_pred             HHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .+...+.+....+.. .++.+..|++.+|+.+++.+.+.+++..+++.
T Consensus       359 ~l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~  405 (468)
T TIGR00788       359 IIAEVLAQLKFMPFL-VLLARLCPSGCESSVFALLASILHLGSSVSGF  405 (468)
T ss_pred             HHHHHHHHHHHccHH-HHHHHhCCCCceehHHHHHHHHHHHHHHHHHH
Confidence            444445555555554 78899999999999999999999999999887

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.06  E-value=5.4e-12  Score=119.70  Aligned_cols=148  Identities=13%  Similarity=0.160  Sum_probs=102.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcc
Q psy17630        141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV  220 (372)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (372)
                      .++......++..+|+++.|+++||+|||+.++++.++..++.++.++....         .+.+...+...+.+++.+.
T Consensus        48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~---------~~~~~~~~~R~~~G~~~g~  118 (451)
T PF00083_consen   48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY---------NNFWMLLIGRFLIGFGIGG  118 (451)
T ss_pred             HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc---------ccccccccccccccccccc
Confidence            4677888999999999999999999999999999999999888887665111         1244555556666555554


Q ss_pred             cccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc
Q psy17630        221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG  300 (372)
Q Consensus       221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  300 (372)
                      ... ....++.|..|++.|+...++......+|..++...                        ..    ......+..+
T Consensus       119 ~~~-~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~------------------------~~----~~~~~~~~~~  169 (451)
T PF00083_consen  119 AYV-VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLI------------------------GY----IVSYYSDNWG  169 (451)
T ss_pred             ccc-cccccccccccccccccccccccccccccccccccc------------------------cc----cccccccccc
Confidence            444 444899999999999998888776665555544430                        00    1111122356


Q ss_pred             cchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        301 TGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                      ||..+.+.++.+++..+. ..++||+.
T Consensus       170 Wr~~~~~~~~~~l~~~~~-~~~~pESP  195 (451)
T PF00083_consen  170 WRILLIFGAIPSLLVLLL-RFFLPESP  195 (451)
T ss_pred             cccccccccccccccccc-cccccccc
Confidence            888777776666655544 45789973

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.06  E-value=4e-09  Score=97.74  Aligned_cols=105  Identities=12%  Similarity=0.085  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceee
Q psy17630        150 FIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVM  229 (372)
Q Consensus       150 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (372)
                      +...+++++.|+++||+|||+++..+.++..++.+++..........    .......++...+.+.+.+... +....+
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~-~~~~~~  120 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIG----IWAPILLLLARLIQGFSLGGEW-GGAALY  120 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhH----HHHHHHHHHHHHHHHhhccccc-cccHHH
Confidence            33456889999999999999999999988888877765541110000    0000122333334433333333 333478


Q ss_pred             eccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        230 MGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       230 ~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +.|.+|+++|+...++......+|..+++.
T Consensus       121 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~  150 (394)
T TIGR00883       121 LAEYAPPGKRGFYGSFQQVGAPVGLLLAAL  150 (394)
T ss_pred             hhhcCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999988888888877776

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.06  E-value=1.8e-09  Score=100.64  Aligned_cols=167  Identities=12%  Similarity=0.128  Sum_probs=98.7

Q ss_pred             hHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      ......+.|.++.+ .|.+..+.++......+...++.++.|+++||+|||+.++.+....++...............  
T Consensus        18 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--   95 (396)
T TIGR00882        18 MSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQ--   95 (396)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence            44555566666654 699999999999999999999999999999999999999877666554433221110000000  


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC  278 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (372)
                        ........+.....+.+.+.... ....+..|..  +.++...+.....+.+|..++|.                   
T Consensus        96 --~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~-------------------  151 (396)
T TIGR00882        96 --SNILVGAIVGGLYLGFVFSAGAG-AIEAYIEKVS--RNSNFEYGKARMFGCVGWALCAS-------------------  151 (396)
T ss_pred             --HHHHHHHHHHHHHHHHHhccchh-hHHHHHHHhh--hhcccccchhhhhcccHHHHHHH-------------------
Confidence              00011111112222233332222 2223434432  22344556666667777777777                   


Q ss_pred             hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630        279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE  325 (372)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e  325 (372)
                                  +.+.+. ..+|+.+|++.+.+.++..++.+...||
T Consensus       152 ------------~~g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~  185 (396)
T TIGR00882       152 ------------IAGILF-SIDPQIVFWLGSGFALILMLLLMFAKPK  185 (396)
T ss_pred             ------------HHhhhh-ccCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence                        555443 4589989988887777766555433444

>KOG1330|consensus

Probab=99.06  E-value=8.5e-10  Score=99.92  Aligned_cols=216  Identities=14%  Similarity=0.112  Sum_probs=108.9

Q ss_pred             echhhHHhhhhh-------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHH
Q psy17630          4 SGILYTYVIGSL-------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELD   76 (372)
Q Consensus         4 ~G~~~~~~i~~~-------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~   76 (372)
                      .|..+|+.++..       |||.|++.   ++++++.+++.+++++|.+|     +..++.       .+++..      
T Consensus       168 vGsglG~vvgs~va~~~~~Wr~af~~~---avl~vi~~~L~~~f~~eP~r-----ga~~~~-------~~~~~~------  226 (493)
T KOG1330|consen  168 VGSGLGYVVGSVVASLTFWWRWAFRGS---AVLGVIVGLLVFLFVREPER-----GARDEV-------DGENKM------  226 (493)
T ss_pred             cccceeEEeeeeeccCccceEEEEEee---hHHHHHHHHHHHhhccCccc-----cccccc-------ccCCcC------
Confidence            444444444444       99999999   99999999999999999754     111110       000000      


Q ss_pred             HHHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHH----hcCCCCCChhhHHHHHHHHH
Q psy17630         77 ELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI----ATNSKIISPNYGQNIVGFIQ  152 (372)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~  152 (372)
                           .+......++.+.+.+++.+....+-.. ...+.    ...+.++.|.+..    -.|++..+..++..+...++
T Consensus       227 -----~~~~ts~~kDl~~l~~~~v~v~~sl~~~-a~~fv----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G  296 (493)
T KOG1330|consen  227 -----VKPFTSVWKDLKVLAKIKVFVLSSLGII-AAQFV----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGG  296 (493)
T ss_pred             -----CCCccchHHHHHHHHccCceeeehHHHH-HHHHh----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhc
Confidence                 0000111223344444442222221111 11111    2334455554432    23667777778888899999


Q ss_pred             HHHHHHHHHHHhhcCCc----chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhccccccccee
Q psy17630        153 VIMTFFSSLLVDKAGRR----PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGV  228 (372)
Q Consensus       153 ~~~~~~~g~l~dr~grr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (372)
                      .+|.+++|.++||+.|+    ....+.-+..+.+..............   ..++.+..++++.+........+.+.. -
T Consensus       297 ~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~---~~~s~~~~~il~~~g~~~~~~~~a~n~-~  372 (493)
T KOG1330|consen  297 SLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF---TSSSMIFGLILFLVGETISWFNWATNN-P  372 (493)
T ss_pred             hhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHhccccccc-c
Confidence            99999999999995331    222222222222211111111000000   011122222222222222233444444 4


Q ss_pred             eeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630        229 MMGELFTPDVKGLALGVICILGSLIE  254 (372)
Q Consensus       229 ~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (372)
                      +..|+.|++.|.++.++...+..+.+
T Consensus       373 i~l~vV~p~~Rt~a~a~~~~~~h~fg  398 (493)
T KOG1330|consen  373 IFLEVVPPSRRTTAYALDTVFEHIFG  398 (493)
T ss_pred             eeeEecCcccccHHHHHHHHHHHHhc
Confidence            56889999999999999876654443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.05  E-value=5.2e-09  Score=110.75  Aligned_cols=109  Identities=12%  Similarity=0.061  Sum_probs=80.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcc
Q psy17630        141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV  220 (372)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (372)
                      .++..++..++.+++++++|+++||+|||++++++.++..+..++..+.....         +.+.+++..++.+++.+.
T Consensus        49 ~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~  119 (1146)
T PRK08633         49 TAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG---------WFWLAFAVTFLLGAQSAI  119 (1146)
T ss_pred             HHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc---------cHHHHHHHHHHHHHHHHh
Confidence            46677788888999999999999999999999988776665555443321111         123444444555444443


Q ss_pred             cccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                       ..+...++++|++|++.|+.++++......++..+++.
T Consensus       120 -~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~  157 (1146)
T PRK08633        120 -YSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTA  157 (1146)
T ss_pred             -hchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHH
Confidence             34455588999999999999999999999999888887

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.04  E-value=3e-09  Score=101.64  Aligned_cols=153  Identities=17%  Similarity=0.129  Sum_probs=110.0

Q ss_pred             hHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHH
Q psy17630        127 LKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLL  206 (372)
Q Consensus       127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (372)
                      .+.+..+..-|+...+++.....+-.++.++++|.++||++||++++.+-++.++..+.+.+.......       +.+.
T Consensus        33 ~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~-------~~~~  105 (524)
T PF05977_consen   33 LAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLL-------SPWL  105 (524)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcC-------CHHH
Confidence            333344444477788888888899999999999999999999999999988877666655544332222       2344


Q ss_pred             HHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhh
Q psy17630        207 PVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEF  286 (372)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (372)
                      ++...++.+.+.+ ...|...++++|+.|+++...++++.....++...++|.                           
T Consensus       106 Ll~~~fl~g~~~a-~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPa---------------------------  157 (524)
T PF05977_consen  106 LLILTFLLGIGSA-FFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPA---------------------------  157 (524)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccch---------------------------
Confidence            4444444444433 344555588999999999999999999999999999998                           


Q ss_pred             hhhhhhHHHHHhcccchhhHHHHHHHHHHHhh
Q psy17630        287 VVVKTFDDVERAFGTGVAFGTFAVYCIIGTFF  318 (372)
Q Consensus       287 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  318 (372)
                          +.+.+....|....|.+-++..++....
T Consensus       158 ----lgG~Lva~~G~~~~f~inalsfl~~i~~  185 (524)
T PF05977_consen  158 ----LGGILVAFFGAAAAFLINALSFLISILA  185 (524)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                7777777777777777666554444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.04  E-value=6.5e-08  Score=92.69  Aligned_cols=111  Identities=15%  Similarity=0.052  Sum_probs=68.0

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchh-hHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhh
Q psy17630        140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLL-LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVF  218 (372)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (372)
                      ..++......++..++.++.|.+..+++|-|.. +++..++.+++-+++..   ..+       +....+....+.+.+.
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~---~~~-------n~~~~i~~~~l~g~gi  419 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV---RPD-------NKNAAIAFLVLAGFGI  419 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc---cCC-------CcchHHHHHHHHHHhH
Confidence            567788888889999999999999998875544 45655555443333222   111       1112222333333333


Q ss_pred             cccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhh
Q psy17630        219 SVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTV  261 (372)
Q Consensus       219 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~  261 (372)
                      +....+.. +...-..|++.-+++.++...+..+|+.++...+
T Consensus       420 G~~~~~~~-~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  420 GGILVPAI-VIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             HHHHHHHH-HeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            32222222 4444567888889999999998888888776644

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.96  E-value=5e-09  Score=98.93  Aligned_cols=167  Identities=14%  Similarity=0.059  Sum_probs=105.3

Q ss_pred             HHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh----cCCcc-hhhHhhHHHHHHHHHHHHHHHHhhcc
Q psy17630        123 VIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRP-LLLISDICMAICIGALGYYFYLLKLD  196 (372)
Q Consensus       123 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (372)
                      ...|++.++ ++.|.++.+.+...+...+...+..++.|+++||    +|||+ .++.+.+..+++.+++...   +...
T Consensus        18 ~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~---~~~~   94 (437)
T TIGR00792        18 VSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT---PDFS   94 (437)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC---CCCC
Confidence            334444444 4569999999999999999999999999999998    67755 5556666666655544222   1100


Q ss_pred             ccccccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630        197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG  275 (372)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (372)
                         ........+....++..+.+....+.. ++..|+. ++++|++..++......+++.+++.                
T Consensus        95 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~----------------  154 (437)
T TIGR00792        95 ---ATGKLVYAYITYILLGLFYSFVNIPYW-SLVPAITLDPRERESLSTFRRFGATLGGLLVAV----------------  154 (437)
T ss_pred             ---cchHHHHHHHHHHHHHHHHHhhcccHh-hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence               000112222223333334333333333 6667876 5688999988887777777766554                


Q ss_pred             hhhhhcchhhhhhhhhhHHHH-------HhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        276 VICILGSLIEFVVVKTFDDVE-------RAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                     +.+.+.       +..+|+..+.+.++++++..++.++..||++
T Consensus       155 ---------------~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       155 ---------------IVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             ---------------HHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence                           222222       2457888888888888777776666677653

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0252|consensus

Probab=98.95  E-value=1.8e-08  Score=91.19  Aligned_cols=106  Identities=17%  Similarity=0.080  Sum_probs=72.4

Q ss_pred             CCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHH
Q psy17630        136 SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYI  215 (372)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (372)
                      +++...+.+..+..++.++|+++.|++.||+|||+++...++++.++.++++.........     ...+.+.....+.+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~-----~~m~~L~~~R~~LG  155 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPL-----GVMMTLCFFRFLLG  155 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCc-----chhhHHHHHHHHhh
Confidence            3445567788889999999999999999999999999999999999888655442211110     11222223333333


Q ss_pred             HhhcccccccceeeeccCCCcchhhhHHHHHH
Q psy17630        216 IVFSVGFGPIPGVMMGELFTPDVKGLALGVIC  247 (372)
Q Consensus       216 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  247 (372)
                      ++.+ +-.|+..+.++|....+.||+-.+...
T Consensus       156 iGIG-GDYPlSAtI~SE~an~~~RGa~iaavF  186 (538)
T KOG0252|consen  156 IGIG-GDYPLSATIMSESANKKTRGAFIAAVF  186 (538)
T ss_pred             cccc-CCCcchHHHhhhhhhhccccceeEEEE
Confidence            3333 334777788899999999988655543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.95  E-value=9e-09  Score=95.50  Aligned_cols=147  Identities=14%  Similarity=0.097  Sum_probs=100.7

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHH-HHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA-ICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  198 (372)
                      ......++|.+.++.|.+..+.++..+...+...++.++.|.++||+||+........... +..+.    .....+   
T Consensus        20 ~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~----~~~~~~---   92 (382)
T TIGR00902        20 YGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAA----FSAGAH---   92 (382)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH----HHHhhh---
Confidence            4566778889999999999999999999999999999999999999998643322211111 11111    111111   


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC  278 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (372)
                          +.+..++...+.+.+.+. ..+...++..|.  .++|+...+.....+.+|..++|.                   
T Consensus        93 ----~~~~l~~~~~l~~~~~~~-~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~-------------------  146 (382)
T TIGR00902        93 ----NAWLLFIAIGLFALFFSA-GMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSA-------------------  146 (382)
T ss_pred             ----hHHHHHHHHHHHHHHHcc-chhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHH-------------------
Confidence                133444444444444443 234443554442  467888999999999999999998                   


Q ss_pred             hhcchhhhhhhhhhHHHHHhcccchhhHHHHHH
Q psy17630        279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY  311 (372)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  311 (372)
                                  +.+.+.+..||+..|.+....
T Consensus       147 ------------l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       147 ------------LFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             ------------HHHHHHHHcChhHHHHHHHHH
Confidence                        888899999999988776554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.94  E-value=1.2e-08  Score=94.61  Aligned_cols=161  Identities=11%  Similarity=0.037  Sum_probs=103.7

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhH-HHHHHHHHHHHHHHHhhcccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI-CMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      ......++|.+.++.|.+..+.++..+...+...++.++.|+++||+|||....-... ...+..+.    .....+   
T Consensus        20 ~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~----~~~~~~---   92 (382)
T PRK11128         20 YGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVA----FWFGAH---   92 (382)
T ss_pred             HHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHH----HHHhcc---
Confidence            4566778888899999999999999999999999999999999999999532211111 11111111    111111   


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC  278 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (372)
                          +.+..++...+.+.+.+.. .+...++..+.  .++|+.+.+.....+.++..++|.                   
T Consensus        93 ----~~~~l~i~~~l~g~~~~~~-~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~-------------------  146 (382)
T PRK11128         93 ----SFWLLFVAIGLFNLFFSPL-VPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSA-------------------  146 (382)
T ss_pred             ----cHHHHHHHHHHHHHHHccc-ccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHH-------------------
Confidence                2344444444444443333 33333454544  355777788888888899999998                   


Q ss_pred             hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                                  +.+.+.+..||+..|++.++..++..+. .++.||.
T Consensus       147 ------------lgg~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~  181 (382)
T PRK11128        147 ------------LTGKLVSWFGEQAILWILTAGVASMLLG-QLLRPTI  181 (382)
T ss_pred             ------------HHHHHHHHcChhHHHHHHHHHHHHHHHH-HHccCCC
Confidence                        8888889999999887766544444333 3344543

>KOG2563|consensus

Probab=98.93  E-value=5e-08  Score=88.37  Aligned_cols=157  Identities=17%  Similarity=0.187  Sum_probs=93.9

Q ss_pred             hhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy17630         89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR  168 (372)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  168 (372)
                      ..+.+.+++++++.     ...+........++.....+...+...|++....|.......+++++++.+.|.+.||.++
T Consensus       256 ~~si~~~~~n~~F~-----il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~  330 (480)
T KOG2563|consen  256 PKSIKSCFKNRQFI-----ILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKK  330 (480)
T ss_pred             HHHHHHHHcCccHH-----HHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            45678888886322     2222222222223344444443444457777899999999999999999999999999876


Q ss_pred             cc-hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHH
Q psy17630        169 RP-LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVIC  247 (372)
Q Consensus       169 r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  247 (372)
                      -+ ++++......++.+.+ .........       .+. +...+...+.++.+..|+..-+..|..-+..-++..|+.+
T Consensus       331 fk~~~~v~~~~~~v~~~~l-~~~t~~~~~-------~vi-v~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~  401 (480)
T KOG2563|consen  331 FKLTTLVLYLFALVGTLML-LTCTLFLGD-------SVI-VFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLN  401 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHhhccCCc-------eEe-hhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEE
Confidence            43 3444333333332221 111111111       222 2223333344556777788788888865566677888888


Q ss_pred             HHHHHHHHHHHH
Q psy17630        248 ILGSLIEFVVVK  259 (372)
Q Consensus       248 ~~~~~~~~~~~~  259 (372)
                      ..+++.+.+...
T Consensus       402 ~~gq~f~~~~~~  413 (480)
T KOG2563|consen  402 LSGQIFGVILVF  413 (480)
T ss_pred             eehhHHHHHHHH
Confidence            888888877776

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.89  E-value=2.3e-08  Score=93.04  Aligned_cols=175  Identities=15%  Similarity=0.057  Sum_probs=108.3

Q ss_pred             HHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHH--HHHHHHHHHHHHHH-HHHHhhcCCcchhhHhhHHHHH-HHHHH
Q psy17630        111 LLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQ--NIVGFIQVIMTFFS-SLLVDKAGRRPLLLISDICMAI-CIGAL  186 (372)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~-g~l~dr~grr~~~~~~~~~~~~-~~~~~  186 (372)
                      ...+.+...+.....+.|.++++.|.+..+.+...  ....+...+.+++. ++..||+|||+..++.+.+... +...+
T Consensus         8 ~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~   87 (390)
T TIGR02718         8 LLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASL   87 (390)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHH
Confidence            33344555567778899999999999999999974  55577787788877 4579999999987655433222 22222


Q ss_pred             HHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccC
Q psy17630        187 GYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFT  266 (372)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (372)
                      ...  ....      ......+..... ...+.....+..-.+..|..+++.++...+.......+|..+++.       
T Consensus        88 ~~~--~~~~------~~~~~~~~~~~~-~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~-------  151 (390)
T TIGR02718        88 ALV--GPDV------AGAGWAVGLLAC-ASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGA-------  151 (390)
T ss_pred             HcC--Ccch------hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHH-------
Confidence            111  0000      001111222222 112222223333345667777777777777766666777777776       


Q ss_pred             CcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630        267 PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE  325 (372)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e  325 (372)
                                              ....+.+..||+..|++.+++.++..+..++..|+
T Consensus       152 ------------------------~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       152 ------------------------GTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             ------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                                    77778888999999999988877766665544343

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.88  E-value=7.7e-08  Score=86.11  Aligned_cols=174  Identities=12%  Similarity=0.131  Sum_probs=115.9

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  169 (372)
                      ...+++++| +.+.-.+..+++...+    .....+++.+..+ .|.+..+.....+....+.++|.+++.++..|+...
T Consensus       228 ~~~~l~~~~-~~~~gvl~~FlYVG~E----va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~  302 (422)
T COG0738         228 GLSSLFQNK-HLRLGVLAIFLYVGAE----VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE  302 (422)
T ss_pred             hHHHHHhCh-HHHHHHHHHHHHHhHH----HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            467788887 4444444445555443    2445667777777 688899999999999999999999999999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL  249 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  249 (372)
                      +.+.+..++..+.++...+.             +....+....+.+.+.+..+ |..++...+..|.+ -..+ |..-..
T Consensus       303 k~Laf~a~~~ill~~~~~l~-------------~g~v~~~~l~~ig~F~simf-PTIfslal~~l~~~-ts~~-s~~l~m  366 (422)
T COG0738         303 KYLAFYALIAILLLLAVALI-------------GGVVALYALFLIGLFNSIMF-PTIFSLALKNLGEH-TSVG-SGLLVM  366 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-------------cChHHHHHHHHHHHHhHHHH-HHHHHHHHhccCcc-cccc-ceeeee
Confidence            98888777666666655554             12233344444444444443 44446667777733 2222 223334


Q ss_pred             HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHH
Q psy17630        250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT  316 (372)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  316 (372)
                      ..+|+++.|+                               +.+.+.|..|....+.....+|.+-.
T Consensus       367 aivGGAiiP~-------------------------------l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         367 AIVGGAIIPP-------------------------------LQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             heecchHHHH-------------------------------HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            5578888888                               99999999888766665555555554

>KOG0253|consensus

Probab=98.87  E-value=1.3e-08  Score=89.67  Aligned_cols=158  Identities=13%  Similarity=-0.042  Sum_probs=106.0

Q ss_pred             HHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccc
Q psy17630        124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL  203 (372)
Q Consensus       124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (372)
                      ....|..-...|.+..+..++......+..+++..+|.++|++|||+.+.......++..++-+..            .+
T Consensus        98 s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s------------pn  165 (528)
T KOG0253|consen   98 SLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS------------PN  165 (528)
T ss_pred             HHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC------------CC
Confidence            334444444558888888999999999999999999999999999999888877776655543322            12


Q ss_pred             cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcch
Q psy17630        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSL  283 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (372)
                      ...+.+...+  .+++.+..|+..++-.|..|...|...+-+. +...+|......                        
T Consensus       166 f~~L~~f~~l--~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~------------------------  218 (528)
T KOG0253|consen  166 FASLCVFRAL--WGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEAL------------------------  218 (528)
T ss_pred             eehhhHHHHH--HhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHH------------------------
Confidence            2223333333  4444444555556668999999998876555 666666666665                        


Q ss_pred             hhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        284 IEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       284 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                             +.-..+...|||+..........+.+ ...+++||+.+
T Consensus       219 -------law~vm~~~gwr~~l~~~~~pl~~~a-~f~~w~~ESpR  255 (528)
T KOG0253|consen  219 -------LAWGVMSNFGWRYLLFTSSTPLMFAA-RFLVWVYESPR  255 (528)
T ss_pred             -------HHHHHHHhhhHHHHHHHHHhHHHHHH-HHHhhcccCcc
Confidence                   55556677899876555554444444 44457888743

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.87  E-value=5.9e-09  Score=95.74  Aligned_cols=144  Identities=19%  Similarity=0.134  Sum_probs=106.6

Q ss_pred             CCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHH
Q psy17630        135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI  213 (372)
Q Consensus       135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (372)
                      |++..++.-+...+....-+..+++||++|| +|+|++++.|.++..++.++++...          ........+.+.+
T Consensus        57 g~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~----------~~~~~gl~i~L~~  126 (498)
T COG3104          57 GFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS----------VSGPGGLYIGLAL  126 (498)
T ss_pred             CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc----------cccccHHHHHHHH
Confidence            4888888777777777777888999999999 5999999999999999998876541          0112233444444


Q ss_pred             HHHhhcccccccceeeeccCCCcch--hhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhh
Q psy17630        214 YIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKT  291 (372)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (372)
                      ...+.+..=..+. .++.|++|+++  |-.+.++.++..++|+++.|.                               +
T Consensus       127 I~iG~Gl~K~NiS-~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~-------------------------------i  174 (498)
T COG3104         127 IIVGTGLFKPNIS-SLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPI-------------------------------I  174 (498)
T ss_pred             HHhccccccccHH-HHHHHhcCCCCcccCCCccEEEEEeehHHHHHHH-------------------------------H
Confidence            4444443333333 78899987653  566888888888999999999                               9


Q ss_pred             hHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        292 FDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       292 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                      .+++.+..||...|...++-..++.+..+
T Consensus       175 ~~~~~~~~g~~~gF~~aavGm~~gl~~f~  203 (498)
T COG3104         175 TGLLAINYGWHVGFGLAAVGMIIGLVIFL  203 (498)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888777766666665544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.82  E-value=2.7e-08  Score=85.23  Aligned_cols=132  Identities=14%  Similarity=0.018  Sum_probs=94.2

Q ss_pred             chHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK  198 (372)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
                      ..+.+..|.|.+.+++|++..+.+.+.....++..+| ++.|.+.|++|.+.++.+|.+...++...+..........  
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~--   93 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPS--   93 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCc--
Confidence            3567889999999999999999999999999998875 8899999999999999999999988887765543222111  


Q ss_pred             ccccccHHHHHHHHHHHHhhcccc-cccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGF-GPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                         .+.|...  ......+.+..+ .........+.|| +.||++.|+.-...++++++...
T Consensus        94 ---~~~~~~~--~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~  149 (250)
T PF06813_consen   94 ---LPVWLMC--LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQ  149 (250)
T ss_pred             ---cchHHHH--HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHH
Confidence               1222222  222222323222 2222133356788 57999999999999999888777

>KOG3762|consensus

Probab=98.73  E-value=7.5e-08  Score=88.94  Aligned_cols=157  Identities=15%  Similarity=0.150  Sum_probs=117.3

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ...+..++-..+++.+....-.+...+....+.++.-++.+++.+|+|+-+++..++.+..+=.+.+...          
T Consensus       387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L----------  456 (618)
T KOG3762|consen  387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL----------  456 (618)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh----------
Confidence            3344445544577777667777788888889999999999999999999999999888777766554433          


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH-HHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL-GSLIEFVVVKTVRHRFTPDVKGLALGVIC  278 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (372)
                        .++|..+..-.+-++..+..+..+. +|++...|++.|.++.++.... .++|--+++.                   
T Consensus       457 --~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl-------------------  514 (618)
T KOG3762|consen  457 --QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL-------------------  514 (618)
T ss_pred             --cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhh-------------------
Confidence              3478888888888888887777776 8999999999999999987643 3333344444                   


Q ss_pred             hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                                  +.+.+.+.++-+..|.++++.|++.+++..
T Consensus       515 ------------IGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  515 ------------IGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             ------------hhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence                        555566777888888888887777665543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.72  E-value=3.7e-07  Score=81.79  Aligned_cols=129  Identities=11%  Similarity=-0.047  Sum_probs=96.2

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      .......|.+.+.++.+..++++.......+..++++..+++.+|+|+|+.++.|+.++++++.++.-+....       
T Consensus        30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~-------  102 (422)
T COG0738          30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK-------  102 (422)
T ss_pred             hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh-------
Confidence            4455677888788899999999999999999999999999999999999999999999999988763221110       


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                        .....+...++.+.+.+.--... ..++..+.|++..+.-+.+...+..+|++++|.
T Consensus       103 --~y~~FL~~lFila~Gi~~Letaa-Np~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~  158 (422)
T COG0738         103 --SYGFFLVALFILASGIGLLETAA-NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPL  158 (422)
T ss_pred             --hHHHHHHHHHHHHhhhHHHHhcc-chHHHHhCCchhHHHHHHHHHHhhhhHHHHHHH
Confidence              11222333333333333322333 367788888877788888899999999999998

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.69  E-value=4.2e-06  Score=79.90  Aligned_cols=147  Identities=10%  Similarity=0.020  Sum_probs=91.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcCC-----cchh--hHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHH
Q psy17630        141 PNYGQNIVGFIQVIMTFFSSLLVDKAGR-----RPLL--LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI  213 (372)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~l~dr~gr-----r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (372)
                      .+++.+...+..++..++..++-.|.+|     +...  .+|+++.+++...+++.......   ....+.++.+....+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~---~~~~s~~~~i~~~~~  390 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADA---GGLTSPWFMVLIYLF  390 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCccCHHHHHHHHHH
Confidence            5677777777777777765544334433     3333  66777777776665543111111   112334555555555


Q ss_pred             HHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhH
Q psy17630        214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFD  293 (372)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (372)
                      .+.+-. ...|....++.+..|++.||+.+|+......++..+++.                               +..
T Consensus       391 ~~~ge~-~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~-------------------------------~~~  438 (475)
T TIGR00924       391 QTLGEL-MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGY-------------------------------LAT  438 (475)
T ss_pred             HHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHH
Confidence            554443 345566688899999999999999999888888888877                               555


Q ss_pred             HHHHhcccchhhHHHHHHHHHHHhhhhee
Q psy17630        294 DVERAFGTGVAFGTFAVYCIIGTFFVYFV  322 (372)
Q Consensus       294 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  322 (372)
                      ...+..+|...+...+..+++..++.++.
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (475)
T TIGR00924       439 FGAVPQGVTGVFGKIGLVTLLVGVVMALM  467 (475)
T ss_pred             HHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            55455566556666666666665555433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09669 putative symporter YagG; Provisional

Probab=98.69  E-value=9.7e-08  Score=90.45  Aligned_cols=166  Identities=14%  Similarity=0.111  Sum_probs=99.5

Q ss_pred             HHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh----cCCcch-hhHhhHHHHHHHHHHHHHHHHhhcc
Q psy17630        123 VIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRPL-LLISDICMAICIGALGYYFYLLKLD  196 (372)
Q Consensus       123 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~  196 (372)
                      ...|++.++. ..|++....+.+..+..+...+..++.|+++||    +|||+. ++.+.+..+++..+...   .+...
T Consensus        28 ~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~---~p~~~  104 (444)
T PRK09669         28 VMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFY---TPDFG  104 (444)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHh---CCCCC
Confidence            3444444444 459999999999999999999999999999999    777554 55565666555443311   11100


Q ss_pred             ccccccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630        197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG  275 (372)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (372)
                         .........+...++..++.....|.. ++.+|+. ++++|....+.......+|+.+++.                
T Consensus       105 ---~~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~----------------  164 (444)
T PRK09669        105 ---ATGKIIYACVTYILLSLVYTAINVPYC-AMPGAITNDPRERHSLQSWRFALSFIGGLIVSV----------------  164 (444)
T ss_pred             ---cchHHHHHHHHHHHHHHHHHhhcchHH-HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence               001112222222333333333333333 6778887 5678988878777777777766654                


Q ss_pred             hhhhhcchhhhhhhhhhHHHH-------HhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        276 VICILGSLIEFVVVKTFDDVE-------RAFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                                     ....+.       ...+|+..+.++++++.+..+.+++..+|.
T Consensus       165 ---------------~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        165 ---------------IALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             ---------------HHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence                           211111       134666677777777766666555555553

>KOG4686|consensus

Probab=98.68  E-value=3.5e-07  Score=77.95  Aligned_cols=124  Identities=15%  Similarity=0.028  Sum_probs=84.4

Q ss_pred             HHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHH-HHHHHHHHHHHhhcccc
Q psy17630        121 NVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI-CIGALGYYFYLLKLDEK  198 (372)
Q Consensus       121 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  198 (372)
                      ..+....|.+++ .+|+++..++.+.+.......+.+++.|.++||+||+...+.+..+..+ +-..+.+.++       
T Consensus       281 fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~l-------  353 (459)
T KOG4686|consen  281 FPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFL-------  353 (459)
T ss_pred             HHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhc-------
Confidence            344445555554 4699999999999999999999999999999999999887765444333 3333322211       


Q ss_pred             ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                          +++.   .+.+.+...... ....|.+++-+.|.++-|++.+.++...+++-++.|.
T Consensus       354 ----sPy~---~m~~lGLsysll-AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~I  406 (459)
T KOG4686|consen  354 ----SPYT---SMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPI  406 (459)
T ss_pred             ----cHHH---HHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhh
Confidence                1222   223332222211 1123455677889999999999999999999999888

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.66  E-value=6.2e-07  Score=79.71  Aligned_cols=157  Identities=13%  Similarity=0.055  Sum_probs=98.3

Q ss_pred             HHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHH
Q psy17630        129 RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPV  208 (372)
Q Consensus       129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (372)
                      .++++.|++..++..+.....+...+...+.|.++||+|||+..+..+++..++++.-..             ++....+
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-------------~~~~~L~  125 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-------------SNYPVLL  125 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-------------cccHHHH
Confidence            445678999999999999999999999999999999999999998888888887764211             1234445


Q ss_pred             HHHHHHHHhhcccccccceeeeccC----CCcchhhhHHHHHHHHH-HHHHHHHHHhhccccCCcccccchhhhhhhcch
Q psy17630        209 ASLAIYIIVFSVGFGPIPGVMMGEL----FTPDVKGLALGVICILG-SLIEFVVVKTVRHRFTPDVKGLALGVICILGSL  283 (372)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~e~----~p~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (372)
                      +...+.+.....-++.-=.-++.|.    +|.+..+...+...... .+.++....                        
T Consensus       126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv------------------------  181 (354)
T PF05631_consen  126 LGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGV------------------------  181 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhH------------------------
Confidence            5555555444433332221233443    44444444444444222 223333333                        


Q ss_pred             hhhhhhhhhHHHHHhcc--cchhhHHHHHHHHHHHhhhheeccCCCCC
Q psy17630        284 IEFVVVKTFDDVERAFG--TGVAFGTFAVYCIIGTFFVYFVVPETKNK  329 (372)
Q Consensus       284 ~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  329 (372)
                             +...+.+..+  ...+|.....+..++.++.....+|+.+.
T Consensus       182 -------~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  182 -------VANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD  222 (354)
T ss_pred             -------HHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence                   3344445444  35688777777777777666567776554

>KOG2816|consensus

Probab=98.64  E-value=7.8e-07  Score=83.48  Aligned_cols=137  Identities=15%  Similarity=0.162  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccce
Q psy17630        148 VGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPG  227 (372)
Q Consensus       148 ~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (372)
                      .++..++.++..|.++||+|||..+....+...+..+...+.              .|+.++...+. ++++. ......
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--------------~~~~~~~~~l~-g~~~~-~~s~~~  134 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--------------GYWFFLLLGLS-GGFSA-IFSVGF  134 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--------------HHHHhhhcccc-cchhh-hhhhhh
Confidence            467888999999999999999999998888877776665544              12222211111 22222 233445


Q ss_pred             eeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHH
Q psy17630        228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGT  307 (372)
Q Consensus       228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  307 (372)
                      ++++|....+.|....++.+.....+..++|.                               +.+...+..|...++.+
T Consensus       135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~-------------------------------~~~~~~~~~~~a~~f~i  183 (463)
T KOG2816|consen  135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPA-------------------------------LGGYLVKFLGIALVFLI  183 (463)
T ss_pred             hheeeccchhHHHHHHHHHHHHHHHHHhHHHH-------------------------------HHHHHHHhcCchHHHHH
Confidence            89999999999999999999988888888888                               88888888888889999


Q ss_pred             HHHHHHHHHhhhheeccCCCCCCH
Q psy17630        308 FAVYCIIGTFFVYFVVPETKNKSL  331 (372)
Q Consensus       308 ~~~~~~~~~~~~~~~~~e~~~~~~  331 (372)
                      ..+..++..+...+++||+..++.
T Consensus       184 a~~~~~~~~~y~~~~l~Esl~~~~  207 (463)
T KOG2816|consen  184 AAASGILSLLYMLLFLPESLQEKE  207 (463)
T ss_pred             HHHHHHHHHHHHhhccccccCccc
Confidence            999999999988889999876543

>PTZ00207 hypothetical protein; Provisional

Probab=98.64  E-value=3.2e-06  Score=81.65  Aligned_cols=163  Identities=10%  Similarity=-0.002  Sum_probs=96.8

Q ss_pred             HHHHHhhHHHHHhc-CCCCCC--hhhHHHHHHHHHHHHHHHHHHHHhhcCCcc--------hhhHhhHHHHHHHHHHHHH
Q psy17630        121 NVVIFYLKRILIAT-NSKIIS--PNYGQNIVGFIQVIMTFFSSLLVDKAGRRP--------LLLISDICMAICIGALGYY  189 (372)
Q Consensus       121 ~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~grr~--------~~~~~~~~~~~~~~~~~~~  189 (372)
                      ......+.++.+.+ |.+.++  ...+.+..++++.+|.+..|.++...-||+        ..+....++.++.+++...
T Consensus       370 l~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~  449 (591)
T PTZ00207        370 FVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLT  449 (591)
T ss_pred             heeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            34556667777887 662322  222778889999999999998883322222        1111111133333322222


Q ss_pred             HHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcc
Q psy17630        190 FYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDV  269 (372)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (372)
                          .+        ...+.+...+.+++.+..++... ..++|+|. ++-|+-..+......+|+.+..-.         
T Consensus       450 ----~p--------~~~L~~~~~lvg~~~G~~~~~~~-~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~---------  506 (591)
T PTZ00207        450 ----LP--------KAALPLPYFIAAFANGFMAATIA-LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRL---------  506 (591)
T ss_pred             ----CC--------ccHhHHHHHHHHHHhhHhHHHHH-HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHH---------
Confidence                11        12445556666677776666555 77899999 777877777766666666655321         


Q ss_pred             cccchhhhhhhcchhhhhhhhhhHHHHHhcc-------------cchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        270 KGLALGVICILGSLIEFVVVKTFDDVERAFG-------------TGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                           +++.++|...             ++.+|++.+++++++.++...+.-+++
T Consensus       507 ---------------------l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r  556 (591)
T PTZ00207        507 ---------------------LYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR  556 (591)
T ss_pred             ---------------------HHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence                                 4455544321             456789999999988887665544444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.62  E-value=2.9e-06  Score=81.16  Aligned_cols=115  Identities=9%  Similarity=-0.068  Sum_probs=74.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcCCcch-------hhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHH
Q psy17630        142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPL-------LLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY  214 (372)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (372)
                      ..++....+..++.+++.+++.||++||+.       +.+|+++.+++.+.+..........  ....+.+..+....+.
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~i~~~~l~  389 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADA--QGLTSPWFIVLVYLFQ  389 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCccCHHHHHHHHHHH
Confidence            445555667777888889999999999973       6677777776655433211111110  0112344444555555


Q ss_pred             HHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +.+..+. .+....++.+..|++.++.++++.+....+++.++..
T Consensus       390 g~Ge~~~-~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~  433 (489)
T PRK10207        390 SLGELFI-SALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGY  433 (489)
T ss_pred             HHHHHHH-hHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554443 3444477788899999999999999888888887765

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.61  E-value=2.8e-07  Score=88.04  Aligned_cols=132  Identities=12%  Similarity=0.097  Sum_probs=80.9

Q ss_pred             HHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHh----hcCCc-chhhHhhHHHHHHHHHHHHHHHHhh
Q psy17630        121 NVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVD----KAGRR-PLLLISDICMAICIGALGYYFYLLK  194 (372)
Q Consensus       121 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr-~~~~~~~~~~~~~~~~~~~~~~~~~  194 (372)
                      .....|++.++.+. |++....+.+..+.-+...+..++.|+++|    |+||| +.++++.+..+++..++.   ..+.
T Consensus        23 ~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf---~~p~   99 (473)
T PRK10429         23 GIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF---SAHL   99 (473)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH---cCCC
Confidence            34445556555554 999999999999999999999999999999    56984 555566666665544431   1110


Q ss_pred             ccccccccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      ..   ........++...++..++.....|.. ++.+|+. ++++|....+.-.....+++.+.+.
T Consensus       100 ~~---~~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~  161 (473)
T PRK10429        100 FE---GTAQYVFVCVTYILWGMTYTIMDIPFW-SLVPTLTLDKREREQLVPYPRFFASLAGFVTAG  161 (473)
T ss_pred             CC---ccHHHHHHHHHHHHHHHHHHHHcchHH-hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00   000111222222333334433333333 6778888 5889998888766666666555543

>KOG3764|consensus

Probab=98.58  E-value=8.1e-08  Score=85.61  Aligned_cols=235  Identities=13%  Similarity=0.027  Sum_probs=137.5

Q ss_pred             ceechhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHH
Q psy17630          2 VVSGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGEL   75 (372)
Q Consensus         2 ~~~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~   75 (372)
                      .++|.++|+..|.+      .+..|++.   +++.++-..+.++.++.+..      +.                     
T Consensus       205 islG~lvgPpfGGilYe~~Gk~aPFlVL---~~v~Lld~~L~l~vi~p~~~------~~---------------------  254 (464)
T KOG3764|consen  205 ISLGVLVGPPFGGILYEFAGKSAPFLVL---AIVLLLDGALQLLVIEPTEM------DP---------------------  254 (464)
T ss_pred             HhccceecCCcccchHhhcCCcCcHHHH---HHHHHHHHHHHHheeCcccc------Cc---------------------
Confidence            46788888888777      89999999   88888866666666654321      00                     


Q ss_pred             HHHHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHH-HHHhcCCCCCChhhHHHHHHHHHHH
Q psy17630         76 DELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKR-ILIATNSKIISPNYGQNIVGFIQVI  154 (372)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~  154 (372)
                              ++.++..++++++++|..+.     ..........+....-..++. ..++...+..+.+.......+...+
T Consensus       255 --------~~~~~~~~~~~Ll~dP~I~~-----~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~i  321 (464)
T KOG3764|consen  255 --------DSTEQGTPMWSLLMDPYILL-----IAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAI  321 (464)
T ss_pred             --------cccccCccHHHHHhCchHhh-----hhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhc
Confidence                    01223456888888873222     222222212122222233333 3344464555888899999999999


Q ss_pred             HHHHHHHHHhhcC--CcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeecc
Q psy17630        155 MTFFSSLLVDKAG--RRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGE  232 (372)
Q Consensus       155 ~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  232 (372)
                      +..+.|.++||++  |......+++..++++....+.....         ..+.........+........|.. .+..|
T Consensus       322 g~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~---------~L~vp~~~l~~~i~~~dasl~P~l-~~lvd  391 (464)
T KOG3764|consen  322 GTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA---------QLWVPNFGLGFGIGLADASLIPTL-GYLVD  391 (464)
T ss_pred             cCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH---------HHhhhhHHHHHHHHHHHHHHhhhh-HHhcc
Confidence            9999999999999  53334444444444333332221000         011111111111111112222333 23333


Q ss_pred             CCCcc---hhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHH
Q psy17630        233 LFTPD---VKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA  309 (372)
Q Consensus       233 ~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  309 (372)
                      .-..+   .-|...++......++.+++|.                               +.+.+.+..|+.|...+.+
T Consensus       392 ~rh~s~~~vYGsVyaIad~a~sla~a~GP~-------------------------------~gg~iv~~iGF~wl~~iig  440 (464)
T KOG3764|consen  392 PRHVSGFNVYGSVYAIADAAFSLAYAIGPT-------------------------------FGGSLVEAIGFEWLMTIIG  440 (464)
T ss_pred             hhhccccceeeeHHHHHHHHHHHhhhcccc-------------------------------ccchheeehhHHHHHHHHH
Confidence            32222   4477788888888888899998                               8889999999988888888


Q ss_pred             HHHHHHHhhhh
Q psy17630        310 VYCIIGTFFVY  320 (372)
Q Consensus       310 ~~~~~~~~~~~  320 (372)
                      ...++-.-++.
T Consensus       441 ~~n~iyapvl~  451 (464)
T KOG3764|consen  441 ILNLIYAPVLL  451 (464)
T ss_pred             HHHHHHHHHHH
Confidence            77776665544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.52  E-value=2.6e-07  Score=87.12  Aligned_cols=164  Identities=14%  Similarity=0.002  Sum_probs=104.3

Q ss_pred             hhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHh----hcCCcchhh-HhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        126 YLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD----KAGRRPLLL-ISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      ..+.+.+..|+++...+.+..+..+...+..++.|.++|    |+|||+..+ .+.+..+++.+++....  +...  +.
T Consensus        24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~--p~~~--~~   99 (428)
T PF13347_consen   24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPP--PAGL--SF   99 (428)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccc--cchh--hh
Confidence            334444445999999999999999999999999999999    789766554 56666666665543210  1000  00


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCC-cchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-PDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                      ........+...++..+......|.. ++.+|+.+ +++|....+.......+|+.+...                    
T Consensus       100 ~~~~~~~~~~~~l~~~~~t~~~i~~~-al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~--------------------  158 (428)
T PF13347_consen  100 TAKLVWLFVFYILFDIAYTFVQIPYN-ALIPELTPDPDERTRLSSWRMIFSMIGSLLASF--------------------  158 (428)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccCchh-hcCccccccHhhhhhHHHHHHHHHHHHHHHHHH--------------------
Confidence            00111223333344445444444444 78899987 568998888887777777755544                    


Q ss_pred             hcchhhhhhhhhhHHHHHh-------cccchhhHHHHHHHHHHHhhhheeccC
Q psy17630        280 LGSLIEFVVVKTFDDVERA-------FGTGVAFGTFAVYCIIGTFFVYFVVPE  325 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~e  325 (372)
                                 +.+.+.+.       .+|+....+.+++.++..++..+..+|
T Consensus       159 -----------~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  159 -----------LAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             -----------HhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence                       22222211       257777778888888888777777777

>PRK11462 putative transporter; Provisional

Probab=98.50  E-value=1.4e-06  Score=82.91  Aligned_cols=131  Identities=12%  Similarity=0.061  Sum_probs=82.4

Q ss_pred             HHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh----cCCcchh-hHhhHHHHHHHHHHHHHHHHhhc
Q psy17630        122 VVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRPLL-LISDICMAICIGALGYYFYLLKL  195 (372)
Q Consensus       122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~  195 (372)
                      ....|+..++.+ .|+++...+.+..+.-+...+.-++.|+++||    +|||+.. +++.+..+++.+++.   ..+..
T Consensus        27 ~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf---~~p~~  103 (460)
T PRK11462         27 NVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAY---STPDL  103 (460)
T ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHH---hCCCC
Confidence            334455555544 49999999999999999999999999999997    6876554 456566666554432   11110


Q ss_pred             cccccccccHHHHHHHHHHHHhhcccccccceeeeccCCC-cchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-PDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .   .........+...++..++.....|.. ++.+|+.+ +++|++..++-...+.+++.+++.
T Consensus       104 s---~~~~~~y~~~~~~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~  164 (460)
T PRK11462        104 S---MNGKMIYAAITYTLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQSWRFVLATAGGMLSTV  164 (460)
T ss_pred             C---cchHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0   001111222233333344443333333 66778765 788999999888888887777665

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.48  E-value=2.5e-06  Score=81.94  Aligned_cols=115  Identities=12%  Similarity=-0.021  Sum_probs=69.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHH----HHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHH
Q psy17630        141 PNYGQNIVGFIQVIMTFFSSL----LVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII  216 (372)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~----l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (372)
                      ..+..++..+..++..++.++    +.||++....+.+|+++.+++.+.+..........   ...+.++.+....+.+.
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~---~~vs~~~~~~~~~l~~~  394 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDA---GIVSVNWLIASYGLQSI  394 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CccCHHHHHHHHHHHHH
Confidence            455666666666666666644    44444445667778888888877765542221111   11223334444444443


Q ss_pred             hhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +- ....|....++.+..|++.||+.+|+......+++.++..
T Consensus       395 ge-~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~  436 (500)
T PRK09584        395 GE-LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGY  436 (500)
T ss_pred             HH-HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33 3445566678899999999999999887666666666655

>TIGR00889 2A0110 nucleoside transporter

Probab=98.44  E-value=4.6e-06  Score=78.33  Aligned_cols=65  Identities=9%  Similarity=0.076  Sum_probs=49.5

Q ss_pred             HHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhHHHHHHHHHH
Q psy17630        122 VVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICIGAL  186 (372)
Q Consensus       122 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~  186 (372)
                      ....+++.++ ++.|++..+.+++.....++.++++++.|+++||+|| |+++.++.++..+.....
T Consensus        20 ~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889        20 SWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            3334444444 5579999999999999999999999999999999965 667776666655554443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG3626|consensus

Probab=98.43  E-value=1.2e-05  Score=78.13  Aligned_cols=92  Identities=18%  Similarity=0.218  Sum_probs=62.8

Q ss_pred             hhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHH-HHHHHHHHHHHHHhhc
Q psy17630         89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKA  166 (372)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~  166 (372)
                      ...++.+++||     +.+...+........+..+..|+|.+++.. |.++..+..+.....+ +..+|.+++|++..|+
T Consensus       382 p~s~~~ll~N~-----if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf  456 (735)
T KOG3626|consen  382 PKSIKRLLSNP-----IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF  456 (735)
T ss_pred             HHHHHHHhcCc-----hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence            34677888887     555555555555555778888999888764 9999888888755444 5678889999999987


Q ss_pred             CC--cchhhHhhHHHHHHHHH
Q psy17630        167 GR--RPLLLISDICMAICIGA  185 (372)
Q Consensus       167 gr--r~~~~~~~~~~~~~~~~  185 (372)
                      .-  |....+.++...+..+.
T Consensus       457 kl~~r~~a~~~~~~~~l~l~~  477 (735)
T KOG3626|consen  457 KLSARGAAKFVIVCSVLSLLF  477 (735)
T ss_pred             cccHHHHHHHHHHHHHHHHHH
Confidence            53  44444444444444443

>KOG2325|consensus

Probab=98.43  E-value=6.5e-07  Score=83.26  Aligned_cols=121  Identities=12%  Similarity=-0.017  Sum_probs=85.7

Q ss_pred             HHHh--cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHH
Q psy17630        130 ILIA--TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLL  206 (372)
Q Consensus       130 ~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (372)
                      ++++  .+-+.+-.|+..+...++.+++++..|+...|.++ |+.++.+.+++.++.++.....+....       ..++
T Consensus        60 Yl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~-------~~y~  132 (488)
T KOG2325|consen   60 YLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG-------VKYL  132 (488)
T ss_pred             hhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc-------hHHH
Confidence            3444  45567778899999999999999999999999986 777888999999999887443222221       2344


Q ss_pred             HHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        207 PVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +++...+  .+.+.+.....-.|+++..-.+.|.++++.......++..++|.
T Consensus       133 mL~~R~l--~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~  183 (488)
T KOG2325|consen  133 MLVARIL--TGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT  183 (488)
T ss_pred             HHHHHHH--cCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence            4444444  34444445555688888877888888888777655566666664

>TIGR00788 fbt folate/biopterin transporter

Probab=98.40  E-value=2.4e-06  Score=81.39  Aligned_cols=167  Identities=11%  Similarity=0.048  Sum_probs=99.0

Q ss_pred             HHHhhchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcC-----CcchhhHhhHHHH-HHHHHH
Q psy17630        114 FLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG-----RRPLLLISDICMA-ICIGAL  186 (372)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----rr~~~~~~~~~~~-~~~~~~  186 (372)
                      +.+... .......+.+++ ++|.+..+.+.......+...+-.+ +|.++||++     ||+.++++.++.. ++...+
T Consensus        36 ~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l  113 (468)
T TIGR00788        36 FVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLL  113 (468)
T ss_pred             HHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhc
Confidence            333333 334444444455 5799999998888888888888655 999999997     6666666655542 221111


Q ss_pred             HHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhh---HHHHHHHHHHHHHHHHHHhhcc
Q psy17630        187 GYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL---ALGVICILGSLIEFVVVKTVRH  263 (372)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~---~~~~~~~~~~~~~~~~~~~~~~  263 (372)
                      ..     ..      +..........+..++.+ ......-.+..|..+ +.+..   ..+.......+|..+++.    
T Consensus       114 ~~-----~~------~~~~~~~~~~~l~~~~~a-~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~----  176 (468)
T TIGR00788       114 PG-----KV------SSAKVAAAFIFLAALAKA-LYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSL----  176 (468)
T ss_pred             cc-----cc------chHHHHHHHHHHHHHHHH-HHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHH----
Confidence            10     00      011122212222222222 223344477788887 44433   333444444577888887    


Q ss_pred             ccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630        264 RFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK  327 (372)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  327 (372)
                                                 +.+.+.+..+|+..|++.+++.++..+. .++++|.+
T Consensus       177 ---------------------------l~G~l~~~~~~~~~f~~~a~l~ll~~~~-~~~~~E~~  212 (468)
T TIGR00788       177 ---------------------------LGGPLLDKTLTRILFLITAALLLLQLFV-SNLSKERR  212 (468)
T ss_pred             ---------------------------HHHHHHHhcCcchHHHHHHHHHHHHHHH-HHhccccc
Confidence                                       7888888889999998888887777433 44677754

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.39  E-value=4.7e-06  Score=73.85  Aligned_cols=152  Identities=13%  Similarity=-0.002  Sum_probs=115.6

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      ..+...++.+-+++|.+...++++++...++..+.+++..++.+|+|.++.+..++++.+++.++=...           
T Consensus        29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-----------   97 (395)
T COG2807          29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-----------   97 (395)
T ss_pred             hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-----------
Confidence            355666777888899999999999999999999999999999999999999999988888877653221           


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (372)
                        ..+..+....+.+.+.+.+..-++ ..+-+-||++ -+..++++.....+++++++.                     
T Consensus        98 --~~~~L~~gt~l~G~gIav~nVLLP-slIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~---------------------  152 (395)
T COG2807          98 --GLPLLFLGTLLAGAGIAVINVLLP-SLIKRDFPKR-VGLMTGLYSTSLGAGAALAAA---------------------  152 (395)
T ss_pred             --cHHHHHHHHHHHHhhHHHHHHhhh-HHHHhhcccc-hhhHHhHHHHHHHHHHHHHhh---------------------
Confidence              123444444455555444444444 6677888854 488899999888898888887                     


Q ss_pred             cchhhhhhhhhhHHHHHhc-ccchhhHHHHHHHHHHHhh
Q psy17630        281 GSLIEFVVVKTFDDVERAF-GTGVAFGTFAVYCIIGTFF  318 (372)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~  318 (372)
                                +...+.++. +|+....+.+..+++..+.
T Consensus       153 ----------lavpla~~~~gW~~aL~~WAl~allAl~~  181 (395)
T COG2807         153 ----------LAVPLAQHSGGWRGALGFWALLALLALLI  181 (395)
T ss_pred             ----------hhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence                      666666666 7999888888887777654

>KOG2615|consensus

Probab=98.28  E-value=1.4e-05  Score=71.24  Aligned_cols=115  Identities=9%  Similarity=0.039  Sum_probs=74.2

Q ss_pred             HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcC--CcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHH
Q psy17630        132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG--RRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVA  209 (372)
Q Consensus       132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (372)
                      +.+|+++.|.+.+.+..++.+.+......+..||..  -+-.+..++.++.-..+.....            ........
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~------------~~~~~l~~  357 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA------------RTPVVLYL  357 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc------------ccchhhhH
Confidence            556899999999988888888888887777777765  3334433333322222221111            11223333


Q ss_pred             HHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        210 SLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      ...+..+..+.....+. .++....|.++||+.+|+....+.++-+++|.
T Consensus       358 ~s~l~sf~~A~~vt~Lt-~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPl  406 (451)
T KOG2615|consen  358 GSTLKSFSTASVVTCLT-SLVHKYGPQSQRGTLNGIFRSLGALARAIGPL  406 (451)
T ss_pred             HHHHHHHHHHHhhHHHH-HHHHhcCCcccchHHHHHHHHHHHHHHHhhhh
Confidence            34444444333333333 66778889999999999999999999999997

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.23  E-value=4.1e-06  Score=76.88  Aligned_cols=57  Identities=11%  Similarity=0.025  Sum_probs=44.2

Q ss_pred             hHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhh
Q psy17630        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISD  176 (372)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~  176 (372)
                      ......+.+..+++ .|++..+.|.+.++..+..++.+++.|.++||+|.|+-++...
T Consensus        23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i   80 (412)
T PF01306_consen   23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI   80 (412)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH
T ss_pred             HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH
Confidence            34455666777765 6999999999999999999999999999999999777665443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09848 glucuronide transporter; Provisional

Probab=98.22  E-value=1.5e-05  Score=75.57  Aligned_cols=59  Identities=14%  Similarity=0.173  Sum_probs=44.3

Q ss_pred             HhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc----CCcchh-hHhhHHHHHHH
Q psy17630        125 FYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA----GRRPLL-LISDICMAICI  183 (372)
Q Consensus       125 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----grr~~~-~~~~~~~~~~~  183 (372)
                      .|.+.++++ .|++..+.+.+..+..+...+..++.|+++||.    |||+.. .++.+...+..
T Consensus        29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~   93 (448)
T PRK09848         29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS   93 (448)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence            344445555 499999999999999999999999999999996    666654 45544444433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.20  E-value=1.6e-05  Score=78.54  Aligned_cols=91  Identities=11%  Similarity=0.054  Sum_probs=61.9

Q ss_pred             hhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHH-HHHHHHHHHHHHHhhcC
Q psy17630         90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAG  167 (372)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g  167 (372)
                      ..+++++++|.++...+..++     .....+.+..++|.++++ +|+++.+++++.....+ +.+++.+++|+++||++
T Consensus       321 ~~~~~Ll~n~~f~~~~l~~~~-----~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~  395 (633)
T TIGR00805       321 KIIKRLLCNPIYMLVILAQVI-----DSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFK  395 (633)
T ss_pred             HHHHHHHcCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeec
Confidence            356778888744333332222     222356677788888875 59999998888877665 56899999999999998


Q ss_pred             C--cchhhHhhHHHHHHHHH
Q psy17630        168 R--RPLLLISDICMAICIGA  185 (372)
Q Consensus       168 r--r~~~~~~~~~~~~~~~~  185 (372)
                      +  |+.+.+++++..+..+.
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       396 LNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             ccHHHHHHHHHHHHHHHHHH
Confidence            4  45566666555555444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.19  E-value=8.8e-06  Score=56.25  Aligned_cols=59  Identities=17%  Similarity=0.225  Sum_probs=52.5

Q ss_pred             chHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhH
Q psy17630        119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI  177 (372)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  177 (372)
                      +...+..|.|.+.++.|++..+++.+..+..+..+++.+++|+++||++|++..+....
T Consensus        15 ~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen   15 ALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            35567888899999999999999999999999999999999999999999988776543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.17  E-value=1.2e-06  Score=82.42  Aligned_cols=230  Identities=11%  Similarity=0.066  Sum_probs=114.9

Q ss_pred             echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (372)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   77 (372)
                      +|.+++..+++.      +|..|.+.   +.++.+..+...+..+|.++     .+.++....      .++..+.....
T Consensus       135 ~G~lv~~~l~G~l~~~~~~~~~f~i~---~~~~~l~~~~~~~~~~e~~~-----~~~~~~~~~------~~~~~~~~~~~  200 (433)
T PF03092_consen  135 VGSLVGSLLSGPLLDSFGPQGVFLIS---AALPLLMLIVALFLLEERKV-----RPADEVFSF------GKEEVPCLFGS  200 (433)
T ss_pred             HHHHHHHHhhhhhhhcCCCeEEehHH---HHHHHHHHHHHHHhhhhccc-----cccchhhcc------cccccchhhHH
Confidence            466666655544      89999998   78888866666666666221     000000000      00000000000


Q ss_pred             HHHHHHHhhhhhhhHHHHHhccchhHHHHH-HHHHHHHHHhhchHH-HHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHH
Q psy17630         78 LQKELDIQAQKKKSLVEIYSNKATVKATIV-IVGLLCFLSFSGINV-VIFYLKRILIATNSKIISPNYGQNIVGFIQVIM  155 (372)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  155 (372)
                             -++.....++.++.+..++..+. .++..... ... .. ..++........++++...+....+..++.++|
T Consensus       201 -------~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~-~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g  271 (433)
T PF03092_consen  201 -------FREQLSELWRALQQRAIWQPILFFIFFFNLPP-SIS-SASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLG  271 (433)
T ss_pred             -------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc-CCC-CccEEEEEeccccccccCHHHHHHHHHHHHHHHHHH
Confidence                   11222346667777655555542 21111111 110 11 112221111112366666667777777777777


Q ss_pred             HHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCC
Q psy17630        156 TFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT  235 (372)
Q Consensus       156 ~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  235 (372)
                      ..+......+..-|+++....++..+..+.-.......+..  ..-+..+..+.--.+........+.|.. .+++|+.|
T Consensus       272 ~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~--~Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP  348 (433)
T PF03092_consen  272 ILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLD--LGIPDQWFALGDTILEEVIGMIAFMPSL-VLAARLCP  348 (433)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeee--eCcCCeEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCC
Confidence            77777666666667776666555544333211100000000  0000112222222333333444455555 67799999


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        236 PDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       236 ~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +...|+.+++...+.+++..++..
T Consensus       349 ~G~Egt~yall~s~~Nlg~~~s~~  372 (433)
T PF03092_consen  349 KGSEGTVYALLASFSNLGSSVSST  372 (433)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988887776

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.11  E-value=0.00016  Score=65.63  Aligned_cols=117  Identities=9%  Similarity=-0.037  Sum_probs=82.0

Q ss_pred             hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHh-hcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHH
Q psy17630        133 ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD-KAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL  211 (372)
Q Consensus       133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (372)
                      -+|++..+...++.....+..++..+.|++.. |.++++...+++....++...+..+....         +.+.+....
T Consensus       238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~---------~~~~~~~~~  308 (403)
T PF03209_consen  238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG---------SPWLFRPGV  308 (403)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc---------cchHHHHHH
Confidence            35899999999999999999999999998776 67888888888888887777665542221         245555666


Q ss_pred             HHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .+++.+.+....... ..+.|+.+++..|+.+|.....+.+...++..
T Consensus       309 ~l~G~g~G~f~vgal-s~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~  355 (403)
T PF03209_consen  309 FLLGLGNGLFTVGAL-SLMMDLTSAGRAGLFMGAWGAAQAIARGLGTF  355 (403)
T ss_pred             HHHHHhhhHHHHHHH-HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence            666655554333233 45577777788888888877666555544443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.10  E-value=6.7e-05  Score=73.83  Aligned_cols=155  Identities=11%  Similarity=0.059  Sum_probs=99.6

Q ss_pred             HHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHH
Q psy17630        130 ILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPV  208 (372)
Q Consensus       130 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (372)
                      +.+.+|++...+..+........-+..+++|+++|+ +||++++..+.++..++..++.+........    .......+
T Consensus        14 l~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~----~~~~~~~l   89 (654)
T TIGR00926        14 FLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH----PLHDLLDL   89 (654)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc----chHHHHHH
Confidence            344568777777777777777777888999999997 6999999999888888877665431100000    00111223


Q ss_pred             HHHHHHHHhhcccccccceeeeccCCCcc---hhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhh
Q psy17630        209 ASLAIYIIVFSVGFGPIPGVMMGELFTPD---VKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIE  285 (372)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (372)
                      +.+.+..++.+..-.++. +...|.++++   .|.....+.+...++|+.+++.                          
T Consensus        90 ~gLaLia~G~GgiKp~vs-af~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~--------------------------  142 (654)
T TIGR00926        90 LGLALIALGTGGIKPCVS-AFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTI--------------------------  142 (654)
T ss_pred             HHHHHHHhhccccccCch-hhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence            333333334333333333 7778888654   3567888888889999988887                          


Q ss_pred             hhhhhhhHHHHHhc-------ccchhhHHHHHHHHHHHhhhh
Q psy17630        286 FVVVKTFDDVERAF-------GTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       286 ~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~  320 (372)
                           +.+.+.+..       +|...|.+.+++.+++.++..
T Consensus       143 -----i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       143 -----ITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             -----HHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence                 666665332       576777777776666665543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.09  E-value=2.5e-05  Score=72.62  Aligned_cols=64  Identities=13%  Similarity=0.155  Sum_probs=52.1

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhHHHHHHH
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICI  183 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~  183 (372)
                      ......|.+.++++.|++..+++.+.+...+..+++.+++|.++||.++ |+.+.+..++.++..
T Consensus        18 ~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~   82 (400)
T PF03825_consen   18 YGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALAL   82 (400)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence            4556778889999999999999999999999999999999999999864 555555555544443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.07  E-value=4.2e-05  Score=71.21  Aligned_cols=169  Identities=18%  Similarity=0.181  Sum_probs=109.0

Q ss_pred             hHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhh----cCCcc-hhhHhhHHHHHHHHHHHHHHHHh
Q psy17630        120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRP-LLLISDICMAICIGALGYYFYLL  193 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~-~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
                      ......|+..++.+. |+++..++.+..+.=+..++.-++.|.++||    +||++ -++.+.+..++...++...   .
T Consensus        28 ~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~---p  104 (467)
T COG2211          28 FGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFIT---P  104 (467)
T ss_pred             HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcC---C
Confidence            344556666666665 9999999999999999999999999999997    67655 4556656666655554222   1


Q ss_pred             hccccccccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCccccc
Q psy17630        194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGL  272 (372)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (372)
                      +.   +.........+...+...++.....|-. ++.+|+. .+++|....+.-..+..+++.+...             
T Consensus       105 ~~---~~~~k~~ya~vtY~l~~l~YT~vniPy~-al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~-------------  167 (467)
T COG2211         105 DF---SMTGKLIYALVTYMLLGLGYTLVNIPYG-ALGPEITQDPQERASLTSWRMVFASLGGLLVAV-------------  167 (467)
T ss_pred             Cc---ccCcchHHHHHHHHHHHHHHHheeCchh-hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence            10   0112233444445555556655544554 6777776 4678999888888888887777666             


Q ss_pred             chhhhhhhcchhhhhhhhhhHHHHH-------hcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        273 ALGVICILGSLIEFVVVKTFDDVER-------AFGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                                        ..+.+..       ..||+....+++++..+..+++++-.+|+
T Consensus       168 ------------------~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER  210 (467)
T COG2211         168 ------------------LFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKER  210 (467)
T ss_pred             ------------------HHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence                              4433333       33565566666666666666666555554

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.98  E-value=1.4e-06  Score=83.81  Aligned_cols=87  Identities=13%  Similarity=0.085  Sum_probs=0.0

Q ss_pred             hhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHH-HHHHHHHHHHHHHhhcC
Q psy17630         90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAG  167 (372)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g  167 (372)
                      ...+++++||     .++...+...........+..|.|.+++. ++.++.+++++.....+ +.++|.+++|++..|+.
T Consensus       296 ~~l~~Ll~Np-----~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k  370 (539)
T PF03137_consen  296 KALKRLLTNP-----VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK  370 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec
Confidence            3456667776     44444455555555566778888888775 48888888877655544 67789999999999974


Q ss_pred             --CcchhhHhhHHHHH
Q psy17630        168 --RRPLLLISDICMAI  181 (372)
Q Consensus       168 --rr~~~~~~~~~~~~  181 (372)
                        .|..+.+..+...+
T Consensus       371 l~~~~~~~~~~v~~~v  386 (539)
T PF03137_consen  371 LSARGAAKFCIVVSIV  386 (539)
T ss_dssp             ----------------
T ss_pred             CcHHHHHHHHHHHHHH
Confidence              34444444433333

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.95  E-value=7.5e-05  Score=69.56  Aligned_cols=153  Identities=10%  Similarity=0.189  Sum_probs=82.8

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCC-CCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSK-IISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR  169 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  169 (372)
                      ++++..+|+     .++-..++.....++++-+..|...+-+...-+ ..--|..-++..+.+.+.++..|++-.++.|-
T Consensus       254 ~~~~~y~n~-----~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~  328 (511)
T TIGR00806       254 ELVTIYRNP-----QLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW  328 (511)
T ss_pred             HHHHHhcCc-----chhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh
Confidence            455556665     333444555666666777777777776665321 12345566677777888889999986666443


Q ss_pred             chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL  249 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  249 (372)
                      .-+.++.+...-+.+++    ....      ..+.|...+...++...+........ .-++.....+.-|...|+.++.
T Consensus       329 ~~l~l~v~s~~~~gll~----~m~~------t~~Iw~~Y~~yvlf~~~y~flitia~-~~iA~~L~~~~~aLvFGiNtfv  397 (511)
T TIGR00806       329 SKLLIAVVSAIQAGLVF----WMSQ------SHDIWVLYVTYVLFRGIYQFLVPIAT-FQIASSLSKELCALVFGINTFV  397 (511)
T ss_pred             HHHHHHHHHHHHHHHhh----hhhc------ccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccceEEEEecHHHH
Confidence            23333322222221111    1111      12456666666666666655444333 3334444445557777777766


Q ss_pred             HHHHHHHHHH
Q psy17630        250 GSLIEFVVVK  259 (372)
Q Consensus       250 ~~~~~~~~~~  259 (372)
                      .-+...+...
T Consensus       398 Al~LQtilT~  407 (511)
T TIGR00806       398 ATALKTIITA  407 (511)
T ss_pred             HHHHHHheEE
Confidence            6655554443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.94  E-value=0.00076  Score=62.87  Aligned_cols=131  Identities=16%  Similarity=0.084  Sum_probs=88.5

Q ss_pred             HHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccc
Q psy17630        124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL  203 (372)
Q Consensus       124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (372)
                      ...+..|+...|+++...+..-....+.++.+.++..++.+|+|..+.-+++......+..+....++....+  .+..+
T Consensus       278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~--~~~~s  355 (432)
T PF06963_consen  278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP--FSSIS  355 (432)
T ss_pred             cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC--chhhH
Confidence            3344556666799999999999999999999999999999999999998888888877777665555443321  00011


Q ss_pred             cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHH
Q psy17630        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVV  257 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~  257 (372)
                      ...++....+.-.|. -++-....-++.|..|+++||...|+-+...++...+.
T Consensus       356 ~~~l~~gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~  408 (432)
T PF06963_consen  356 AYLLLGGIALSRIGL-WSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS  408 (432)
T ss_pred             HHHHHHHHHHHHHHH-HhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence            111222222221111 12222333577999999999999999888887766543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.79  E-value=0.00089  Score=63.69  Aligned_cols=144  Identities=17%  Similarity=0.256  Sum_probs=86.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHH-HHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhccc
Q psy17630        143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA-ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVG  221 (372)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (372)
                      +..++..+...+..++.|-++|+-++|+.++....+.+ ++...+.+.   ...       ..+...++..+...+++..
T Consensus        74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v---~~~-------~~~~~~~l~iia~v~~~~~  143 (477)
T PF11700_consen   74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV---SPG-------QWWLALVLFIIANVGYEAS  143 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh---Ccc-------hHHHHHHHHHHHHHHHHHH
Confidence            45667788888899999999999998887765544443 333333222   111       1233333333333344333


Q ss_pred             ccccceeeeccCCCcchh--------------------------hhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630        222 FGPIPGVMMGELFTPDVK--------------------------GLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG  275 (372)
Q Consensus       222 ~~~~~~~~~~e~~p~~~r--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (372)
                      .. ...++++|+.+++.+                          ++..+.....+++|+.+.-.                
T Consensus       144 ~v-fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~----------------  206 (477)
T PF11700_consen  144 NV-FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALL----------------  206 (477)
T ss_pred             HH-HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHH----------------
Confidence            22 333788899888777                          88888888888887766443                


Q ss_pred             hhhhhcchhhhhhhhhhHHH--------HHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        276 VICILGSLIEFVVVKTFDDV--------ERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                                     +.-.+        .+....|..+.+.++.-++..+..++++||.++
T Consensus       207 ---------------i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  207 ---------------ISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             ---------------HHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence                           11111        112234666777777766666666667777644

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2563|consensus

Probab=97.77  E-value=0.00027  Score=64.64  Aligned_cols=116  Identities=17%  Similarity=0.066  Sum_probs=76.8

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccH--HHHHHHHHH
Q psy17630        137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGL--LPVASLAIY  214 (372)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  214 (372)
                      +....-+.+.++.+..++..+.+-|+.||+|-|...+++....+++..+=.......-      +...+  +......+.
T Consensus        77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v------~~~f~~~l~~~Gq~ia  150 (480)
T KOG2563|consen   77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFV------PPLFRRPLTHTGQSIA  150 (480)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccc------cccchhhhhHHhHHHH
Confidence            5666778999999999999999999999999999999999999998877544422111      11222  222222222


Q ss_pred             HHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      ..... ....++.-...-+||+++|+.+..+..+...+|.+++-.
T Consensus       151 a~Aq~-Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  151 AAAQP-FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHhhh-HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            22111 111222123344689999999999888887777766554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.70  E-value=0.00031  Score=66.23  Aligned_cols=157  Identities=13%  Similarity=0.074  Sum_probs=94.7

Q ss_pred             hHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-----CCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630        127 LKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD  201 (372)
Q Consensus       127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (372)
                      .+.+.+++|.++.+.........+-. ...++.|.++|-+     .||+-++++.++..++.+.++.....        .
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~--------~   83 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS--------E   83 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc--------c
Confidence            34445667888777666555544443 3457999999986     35555566666665544444332110        0


Q ss_pred             cccHHHHHHHHHHHHhhcccccccceeeeccCC---CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630        202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF---TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC  278 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (372)
                      .+.....+...+...+.... ..+.-++..|..   |.+ |+...+.......+|+.++..                   
T Consensus        84 ~s~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~-------------------  142 (433)
T PF03092_consen   84 SSAAIAVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSL-------------------  142 (433)
T ss_pred             chhhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            11122222222222222222 222335556664   333 778888888888888888887                   


Q ss_pred             hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630        279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE  325 (372)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e  325 (372)
                                  +.+.+.+..+++..|.+.+.+..+..+...++.+|
T Consensus       143 ------------l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  143 ------------LSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             ------------hhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence                        77888888899889988888877777666656666

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.48  E-value=0.0071  Score=48.03  Aligned_cols=109  Identities=13%  Similarity=0.033  Sum_probs=77.2

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHH
Q psy17630        137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII  216 (372)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (372)
                      +...-.....+......+++++.+.+.+++|.|+.++++.+...+-.....    ..         +.+..+....+.++
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~----~~---------~~~~l~~~s~l~G~  101 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF----YP---------NSYTLYPASALLGF  101 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----hh---------hHHHHHHHHHHHhh
Confidence            334445566677788888999999999999999999998777765444321    11         13455566666666


Q ss_pred             hhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +.+..+.... .++.+...++.|++-.++.......+..++..
T Consensus       102 ~~a~lW~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~  143 (156)
T PF05978_consen  102 GAALLWTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNL  143 (156)
T ss_pred             hhHHhhHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            7666666555 77888888888999888877776666665554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2816|consensus

Probab=97.41  E-value=0.00046  Score=65.08  Aligned_cols=113  Identities=13%  Similarity=0.113  Sum_probs=83.2

Q ss_pred             hcCCCCCChhhHHHHHHHHHHHHHHHHH-HHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHH
Q psy17630        133 ATNSKIISPNYGQNIVGFIQVIMTFFSS-LLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL  211 (372)
Q Consensus       133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (372)
                      .++++..+.+.+.+.......+++++.. .+...+|-|+....|+....+.....++.            +..|......
T Consensus       271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~------------~~~w~~~~~~  338 (463)
T KOG2816|consen  271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA------------TETWMMFAAG  338 (463)
T ss_pred             ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh------------ccchhhhHHH
Confidence            3488888888888888888888888776 78888999998888888888887776665            1234433332


Q ss_pred             HHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      ...  ..+....+...+.++-..+++.+|+.+++......+.+.++|.
T Consensus       339 v~~--~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~  384 (463)
T KOG2816|consen  339 VVV--ALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPA  384 (463)
T ss_pred             HHH--HhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHH
Confidence            222  2233334444467777888999999999999999998888887

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.40  E-value=0.016  Score=55.40  Aligned_cols=116  Identities=16%  Similarity=0.145  Sum_probs=72.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHhhcCC--cch-----hhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHH
Q psy17630        140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGR--RPL-----LLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA  212 (372)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (372)
                      ...+.++...+..++.+++.+++=.|.+|  |..     +.+|+++.+++.+.+.........+   ...+.++.+....
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~---~~~s~~wl~~~~~  385 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMY---GHSSLPLMVLGLA  385 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCcCHHHHHHHHH
Confidence            46677888888888888887777666633  211     5667777777776654433221111   1123334333333


Q ss_pred             HHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHH-HHHHHHHHH
Q psy17630        213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG-SLIEFVVVK  259 (372)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~~~~~~~~  259 (372)
                      +.. ..-...+|+..++++++.|++.||..+|+..... .+++.++..
T Consensus       386 ~~t-~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~  432 (493)
T PRK15462        386 VMG-FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGV  432 (493)
T ss_pred             HHH-HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333 3345567788889999999999999999986533 455555544

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.37  E-value=0.0014  Score=60.24  Aligned_cols=150  Identities=11%  Similarity=0.160  Sum_probs=79.9

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc---CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcC
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT---NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG  167 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g  167 (372)
                      ++++..+++     .++...++.....+|++.+..|...+-++.   +-...--|..-+...+.+.++.+..|++..++.
T Consensus       239 ~~~~~y~~~-----~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~  313 (412)
T PF01770_consen  239 DFKSCYSNP-----RLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWD  313 (412)
T ss_pred             HHHHHhcCc-----hHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchH
Confidence            344555555     444445666666777777777777777666   222233355666777778888889999866666


Q ss_pred             CcchhhHhhHHH--HHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHH
Q psy17630        168 RRPLLLISDICM--AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGV  245 (372)
Q Consensus       168 rr~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  245 (372)
                      +..-+..+.+-.  +.+.+++...            .+.|.......++...+........ .-++.....+.-+...|+
T Consensus       314 ~~~~l~l~~~S~l~a~~L~lm~~t------------~~Iwv~Y~~yIif~~~y~fliTiA~-~qIA~~l~~e~yaLVFGi  380 (412)
T PF01770_consen  314 RWGELALGVFSLLQAGLLFLMSFT------------GNIWVCYAGYIIFRSLYMFLITIAS-FQIAKNLSEERYALVFGI  380 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccceeeeeee
Confidence            654444333222  2222222221            1244445555555444443333222 222333334444777777


Q ss_pred             HHHHHHHHHHHHH
Q psy17630        246 ICILGSLIEFVVV  258 (372)
Q Consensus       246 ~~~~~~~~~~~~~  258 (372)
                      .++...+...+..
T Consensus       381 Ntf~Al~LQtilT  393 (412)
T PF01770_consen  381 NTFVALVLQTILT  393 (412)
T ss_pred             HHHHHHHHHHheE
Confidence            6666555544433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.36  E-value=0.0015  Score=59.52  Aligned_cols=126  Identities=9%  Similarity=0.047  Sum_probs=72.9

Q ss_pred             HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcC-----CcchhhH-hhHHHHHHHHHHHHHHHHhhccccccccccH
Q psy17630        132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG-----RRPLLLI-SDICMAICIGALGYYFYLLKLDEKLVDGLGL  205 (372)
Q Consensus       132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----rr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (372)
                      .|++.+..-.+.+.....+. .+..+..|+.||+.+     ||..+++ |...+..+..+...............+...+
T Consensus         8 vEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~   86 (403)
T PF03209_consen    8 VELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW   86 (403)
T ss_pred             HHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence            34454444444444444433 346889999999998     7766554 5555555555554444443331011112222


Q ss_pred             HH--H--HHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        206 LP--V--ASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       206 ~~--~--~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      ..  .  ..+.+++.+.+..-.+.. ++++|..|+++|++..++.....-+|..++..
T Consensus        87 ~g~~~a~l~F~l~G~G~~~s~T~~l-ALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai  143 (403)
T PF03209_consen   87 LGLALAALAFLLYGLGVHASGTSFL-ALLADLAPEERRPRVVAIVWVMLIVGIIVSAI  143 (403)
T ss_pred             HHHHHHHHHHHHHHhhHhHhHHHHH-HHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            22  2  223333333333333333 78899999999999999998887777777776

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.30  E-value=4.6e-05  Score=73.46  Aligned_cols=137  Identities=10%  Similarity=0.020  Sum_probs=0.8

Q ss_pred             HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcc--cc
Q psy17630        121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD--EK  198 (372)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  198 (372)
                      .......+.+.++++++..+.+++.+..-++.++..++..++.+|..|-+.+-+|.++++++.+++++-.+.....  +.
T Consensus        20 g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~   99 (539)
T PF03137_consen   20 GYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEE   99 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccc
Confidence            3445556677788899999999999999999999999999999998888888889999999888876643322211  00


Q ss_pred             --------------------------------ccccccHHHHHHHHHHHHhhccc---ccccceeeeccCCCcchhhhHH
Q psy17630        199 --------------------------------LVDGLGLLPVASLAIYIIVFSVG---FGPIPGVMMGELFTPDVKGLAL  243 (372)
Q Consensus       199 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~e~~p~~~r~~~~  243 (372)
                                                      ......+..+..+.+.....+.+   ..++..+|+-|..+++.-+...
T Consensus       100 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYi  179 (539)
T PF03137_consen  100 ASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYI  179 (539)
T ss_dssp             ----------------------------------------------------SSS-------------------------
T ss_pred             ccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccch
Confidence                                            00111111122222222222222   3355668999999988888888


Q ss_pred             HHHHHHHHHHHHHH
Q psy17630        244 GVICILGSLIEFVV  257 (372)
Q Consensus       244 ~~~~~~~~~~~~~~  257 (372)
                      |+.+....+|.+++
T Consensus       180 Gi~~~~~~lGPa~G  193 (539)
T PF03137_consen  180 GILYAMSILGPALG  193 (539)
T ss_dssp             --------------
T ss_pred             hhhhHHhhccHHHH
Confidence            88777666555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626|consensus

Probab=97.24  E-value=0.0046  Score=60.72  Aligned_cols=153  Identities=9%  Similarity=0.022  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630        105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG  184 (372)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~  184 (372)
                      ++....+..+.+......+......+-+.++++..+.+++....-++..+...+..+..-|..|-+.+-+|+++++++.+
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl  177 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL  177 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence            44444444444443334444455566677799999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhhcc------------cc---------------------cc---ccccHHHHHHHHHHHHhhcc---ccccc
Q psy17630        185 ALGYYFYLLKLD------------EK---------------------LV---DGLGLLPVASLAIYIIVFSV---GFGPI  225 (372)
Q Consensus       185 ~~~~~~~~~~~~------------~~---------------------~~---~~~~~~~~~~~~~~~~~~~~---~~~~~  225 (372)
                      +.++--+.....            .+                     ..   ....+...+.+++.....++   ...++
T Consensus       178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl  257 (735)
T KOG3626|consen  178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL  257 (735)
T ss_pred             HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence            876652221110            00                     00   11121122222222222222   33455


Q ss_pred             ceeeeccCCCcchhhhHHHHHHHHHHHHHHHH
Q psy17630        226 PGVMMGELFTPDVKGLALGVICILGSLIEFVV  257 (372)
Q Consensus       226 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~  257 (372)
                      ...|+-|...++.-....|+.+....+|.+++
T Consensus       258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiG  289 (735)
T KOG3626|consen  258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIG  289 (735)
T ss_pred             CCccccccccccCCcHHHHHHHHHHHhhhHHH
Confidence            56788888888877888888877666655544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.15  E-value=0.02  Score=54.20  Aligned_cols=120  Identities=7%  Similarity=-0.063  Sum_probs=74.9

Q ss_pred             CChhhHHHHHHHHHHHH-HHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcc-ccc--------ccc------
Q psy17630        139 ISPNYGQNIVGFIQVIM-TFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD-EKL--------VDG------  202 (372)
Q Consensus       139 ~~~~~~~~~~~~~~~~~-~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~------  202 (372)
                      +...++-+...+...+. .++.+++++|++|++.+-..........+++++..+...+. +++        ...      
T Consensus        43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~  122 (472)
T TIGR00769        43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF  122 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence            44555555554544444 78899999999999998877777776666665554322211 000        000      


Q ss_pred             ----ccHHHHHHHHHHHHhhc-ccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        203 ----LGLLPVASLAIYIIVFS-VGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       203 ----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                          ..|... .+.+..-.++ ...+.+.|.+++|.+..++-.+-.++....++++..+++.
T Consensus       123 i~~~~~W~~~-~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~  183 (472)
T TIGR00769       123 IAILRIWSFA-LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGR  183 (472)
T ss_pred             HHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                011111 1111111222 2233367889999999999999999999999999999887

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.14  E-value=0.12  Score=48.46  Aligned_cols=118  Identities=14%  Similarity=0.036  Sum_probs=72.8

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHhhcCCc--c-----hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHH
Q psy17630        139 ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR--P-----LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL  211 (372)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (372)
                      ....+.++...+.-++.+++..++-.+.+++  .     -+-+++++++.+.+++.........  +....+.++.+...
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~--~~~~~s~~~lil~y  401 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGG--PSGLVSVWWLVLSY  401 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCcCHHHHHHHH
Confidence            4566788888888888888888887775544  1     1345555555555554433122211  12223344444444


Q ss_pred             HHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .+. ...-...+|+...++....|+...+..++........+..+...
T Consensus       402 ~l~-s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~  448 (498)
T COG3104         402 VLQ-SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQ  448 (498)
T ss_pred             HHH-HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhce
Confidence            333 33345667777788888999998898888887777666666655

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.08  E-value=0.0034  Score=43.92  Aligned_cols=70  Identities=10%  Similarity=0.002  Sum_probs=61.7

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHH
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYY  189 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  189 (372)
                      -+.+...+|.+.++.+++..+.+++.+...++..+|.+...++.++.++++.+..+.+...+..+.+++.
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778899999999999999999999999999999999999999888888888888888887777655

Note that many members are hypothetical proteins.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.00  E-value=0.015  Score=51.13  Aligned_cols=126  Identities=17%  Similarity=0.107  Sum_probs=73.5

Q ss_pred             HHHhhHHHHHhcCCCC--CChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630        123 VIFYLKRILIATNSKI--ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV  200 (372)
Q Consensus       123 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
                      .....+.+..+.+.+.  ...++......+...++.++.|.++||+|||+.+..+.....++.+...+...         
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---------   91 (338)
T COG0477          21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN---------   91 (338)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence            3445555555554333  35677888888888888899999999999997777776553333233222210         


Q ss_pred             ccccHHHHHHHHHHHHhhcccccccceeeeccCCCc-chhhhHHHHHHH-HHHHHHHHHHH
Q psy17630        201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-DVKGLALGVICI-LGSLIEFVVVK  259 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~-~~~~~~~~~~~  259 (372)
                       ...+.........+.+.+ ...+....++.|.+|. +.|+...+.... ....+..+++.
T Consensus        92 -~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (338)
T COG0477          92 -VGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPL  150 (338)
T ss_pred             -chHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             012222333332222322 2334555788899887 567777777666 34444444443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.98  E-value=0.021  Score=52.62  Aligned_cols=112  Identities=10%  Similarity=-0.060  Sum_probs=63.8

Q ss_pred             cCCCCCChhhHHHH-HHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHH
Q psy17630        134 TNSKIISPNYGQNI-VGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA  212 (372)
Q Consensus       134 ~g~~~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (372)
                      .|++..+..--..+ ..-......+....+.|..+.|++++++.+...+...++.+.            .+...+-+.-.
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~------------~sv~~mq~~q~  102 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG------------TSVLAMQLMQF  102 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH------------CcHHHHHHHHH
Confidence            47776665433333 333455667788899999999999999877766666554333            11223333344


Q ss_pred             HHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .++...+.  -...++|+--..|+++-.++.+.......+|.+++..
T Consensus       103 ~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~  147 (412)
T PF01770_consen  103 FYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSL  147 (412)
T ss_pred             HHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444332  2223344444556665556666666555555555554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2325|consensus

Probab=96.70  E-value=0.0018  Score=60.70  Aligned_cols=57  Identities=16%  Similarity=0.185  Sum_probs=42.6

Q ss_pred             eeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHH
Q psy17630        228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGT  307 (372)
Q Consensus       228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  307 (372)
                      +.-+|+..++.+++..++....+..+..++|.                               +........|.+....+
T Consensus       411 tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~-------------------------------~~t~~~~~~g~~~v~~~  459 (488)
T KOG2325|consen  411 TLYSKILGPRDQGTMQGVFSISGSIARVVGPI-------------------------------FSTAIFTLSGPRPVWII  459 (488)
T ss_pred             HHHHHHhCCccccceeEEEEeccchhhhhhHH-------------------------------HHhhhHHhcCccHHHHH
Confidence            45588899999999999998888888888887                               66677777888765554


Q ss_pred             HHHHHHHH
Q psy17630        308 FAVYCIIG  315 (372)
Q Consensus       308 ~~~~~~~~  315 (372)
                      .+...++.
T Consensus       460 ~~~~~l~~  467 (488)
T KOG2325|consen  460 LLCLLLVV  467 (488)
T ss_pred             HHHHHHHH
Confidence            44443333

>KOG0637|consensus

Probab=96.66  E-value=0.0019  Score=59.43  Aligned_cols=153  Identities=14%  Similarity=0.100  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh----cCCcchhhHh-hH
Q psy17630        103 KATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRPLLLIS-DI  177 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~~~~-~~  177 (372)
                      +.++......+..+++ ...-..|.+.++++.|.+....+..-...-+.+.+..++.|..+||    ||||+.++.. ..
T Consensus        32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            3344444455555544 5566778888999999988888888888888999999999999997    7888776654 44


Q ss_pred             HHHHHHHHHHHHHHHhhccccccc--cccH---HHHHHHHHHHHhhcccccccceeeeccCCCcchhhh-HHHHHHHHHH
Q psy17630        178 CMAICIGALGYYFYLLKLDEKLVD--GLGL---LPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL-ALGVICILGS  251 (372)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~~~~~~~~~  251 (372)
                      ...++.++++........-++...  ....   ..++.+.+.-+......+|.= +++.|+...+.+-+ +++....+..
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~a  189 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMA  189 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHH
Confidence            445555555544333321111111  1111   122222223233334445555 78899987776666 8888777777


Q ss_pred             HHHHHH
Q psy17630        252 LIEFVV  257 (372)
Q Consensus       252 ~~~~~~  257 (372)
                      +|+.++
T Consensus       190 vGnvLG  195 (498)
T KOG0637|consen  190 VGNVLG  195 (498)
T ss_pred             hcceee
Confidence            766544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.42  E-value=0.076  Score=48.98  Aligned_cols=55  Identities=11%  Similarity=0.059  Sum_probs=36.1

Q ss_pred             cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .|..++..+..+...+..+.... ..+.|-.|+++|-.+++.....-.+|-.++..
T Consensus       335 i~ivf~lif~eGLlGGa~YVNtF-~~I~~~~~~~~REFslg~vsvsds~GI~lAgl  389 (402)
T PF02487_consen  335 IWIVFVLIFYEGLLGGASYVNTF-YRISEEVPPEDREFSLGAVSVSDSLGILLAGL  389 (402)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            45555555555555555555444 44566778899999999888777776666554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098|consensus

Probab=96.17  E-value=0.066  Score=50.27  Aligned_cols=116  Identities=19%  Similarity=0.092  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhh---cCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc----c--cccccHHHHHHHH
Q psy17630        142 NYGQNIVGFIQVIMTFFSSLLVDK---AGRRPLLLISDICMAICIGALGYYFYLLKLDEK----L--VDGLGLLPVASLA  212 (372)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~g~l~dr---~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~  212 (372)
                      +......+++.+++....+.+.+|   +||++++.++..+..+..++.........+-.+    .  ........++...
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            344556677778888888888765   789999888888777776665443322221000    0  0111223333333


Q ss_pred             HHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +.+.+-+. +....+.++.+.+ ++.|..+.++.-+-..+.+.+.-.
T Consensus       362 l~G~~D~~-~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f  406 (461)
T KOG3098|consen  362 LLGFGDAC-FNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFF  406 (461)
T ss_pred             HHhhHHHH-HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhh
Confidence            44333332 3344456777778 577888888877766666655443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.09  E-value=0.048  Score=50.05  Aligned_cols=106  Identities=21%  Similarity=0.196  Sum_probs=61.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHH-HHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcc
Q psy17630        142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM-AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV  220 (372)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (372)
                      +...++..+...+-+++-|.++|+.|+|+..+..+... .++...+.+.   ..      .+..+..++...+...++..
T Consensus        61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i---~~------~s~~~~~l~~~il~~i~~~~  131 (438)
T COG2270          61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI---PP------GSYLLLLLLFLILASIGFEF  131 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh---CC------CchHHHHHHHHHHHHHhcch
Confidence            34566677777888899999999999877665443333 3333333222   11      01233333333444444333


Q ss_pred             cccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHH
Q psy17630        221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVV  257 (372)
Q Consensus       221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~  257 (372)
                      . .....+++.++.+++.-++..+.....+++++.+.
T Consensus       132 s-~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~  167 (438)
T COG2270         132 S-NVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVIL  167 (438)
T ss_pred             h-heehhhHhhhhcCccccCcccccccccccccchHH
Confidence            2 23334788888887776777777666666666543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=95.66  E-value=0.28  Score=46.82  Aligned_cols=109  Identities=12%  Similarity=0.068  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcc-cccc----------ccccHHH-------HHHHH
Q psy17630        151 IQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD-EKLV----------DGLGLLP-------VASLA  212 (372)
Q Consensus       151 ~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~-------~~~~~  212 (372)
                      +.++...+..+++++++|.+++.+..........++++..++..+. +++.          ..-.+..       ..++.
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            4556677889999999999988877777666666666654332210 0000          0000000       00011


Q ss_pred             HHHHhh-cccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        213 IYIIVF-SVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       213 ~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +..=.. ....+.+.|.+.+|.++.++-.+-.++....++++..+++.
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~  198 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQ  198 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111 12223355788999999999899999999999999988887

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=95.59  E-value=0.021  Score=51.30  Aligned_cols=53  Identities=11%  Similarity=-0.042  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        206 LPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      ..++..++.+.+.+....... .+++++.|++.+++.+++...+..+|..++|.
T Consensus        12 ~~l~~~f~~g~G~~~lq~~~n-~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~   64 (310)
T TIGR01272        12 LFLGALFVLASGLTILQVAAN-PYVSILGPIETAASRLALTQAFNKLGTTVAPL   64 (310)
T ss_pred             HHHHHHHHHHhhHHHHHhhHH-HHHHHHCCcchHHHHHHHHHHHhhhHHHHHHH
Confidence            334444455455444434343 88899999999999999999999999999998

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.46  E-value=0.061  Score=49.71  Aligned_cols=116  Identities=11%  Similarity=-0.009  Sum_probs=73.2

Q ss_pred             chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc---hhhhHHHHH
Q psy17630        170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD---VKGLALGVI  246 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~  246 (372)
                      ++++++.++..++.+++.++.......   .........+.+.+...+.+..=..+. .+.+|.++++   .|.......
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~---~~~~~~~~~~gL~lia~G~G~~K~ni~-~~~~dq~~~~~~~~~~~~F~~f   77 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLP---SGIQLGLFYIGLALIAVGTGGIKPNIS-PFGADQYDEDDDSRRDSFFNWF   77 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC---------CHHHHHHHHHHHHHHCCHHHHH-HHHHHCSSTTTTTHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhh---hhHHHHHHHHHHHHHHhccccccccHH-HHHHHHhcccchhhhhhhHHHH
Confidence            456777778888777755543222210   011123444545555555554333444 7888888765   356678888


Q ss_pred             HHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        247 CILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                      +...++|+.++..                               ..+++.+..||...|.+.++..+++.+..+
T Consensus        78 Y~~in~G~~~~~~-------------------------------~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   78 YWGINIGSLFSPT-------------------------------LVPYIQQNYGWFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHHHHHHHHHHH-------------------------------CCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHhhcc-------------------------------cchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence            9999999999988                               888888999998888887777776666544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3810|consensus

Probab=95.45  E-value=0.52  Score=42.35  Aligned_cols=152  Identities=13%  Similarity=0.153  Sum_probs=81.6

Q ss_pred             hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCC--CCChhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy17630         91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSK--IISPNYGQNIVGFIQVIMTFFSSLLVDKAGR  168 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  168 (372)
                      ++.+..++|     .++.-.++.....+|++-+.+|...+-++..-.  ..--|..=++..+.++++.+..|.+--.+.|
T Consensus       226 ~l~~~y~np-----~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r  300 (433)
T KOG3810|consen  226 DLQECYSNP-----RLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNR  300 (433)
T ss_pred             HHHHHhcCc-----hhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccch
Confidence            455666666     333334555666667777777776666655311  1112334456677778888899998877777


Q ss_pred             cchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHH
Q psy17630        169 RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI  248 (372)
Q Consensus       169 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  248 (372)
                      ..-++++..-...+.++    ++....      .+.|...+...++...+........ .-+++....+.-|...|+..+
T Consensus       301 ~g~~ll~~~s~~~agll----f~m~~t------~~Iw~~Ya~yvlfr~~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTF  369 (433)
T KOG3810|consen  301 WGDLLLAVGSAVQAGLL----FIMAQT------QHIWVCYAGYVLFRVIYQLTITIAT-FQIARNLSSELFGLVFGINTF  369 (433)
T ss_pred             hhHHHHHHHHHHhhhhh----hhhhcc------cceehhhhhHHHHHhhHhhhhhHHH-HHHHHhhhhhhheeeeehHHH
Confidence            64444333221111111    222221      2355555555555555554444333 233444455556777777766


Q ss_pred             HHHHHHHHHH
Q psy17630        249 LGSLIEFVVV  258 (372)
Q Consensus       249 ~~~~~~~~~~  258 (372)
                      ..-+...+..
T Consensus       370 vAl~lQsilT  379 (433)
T KOG3810|consen  370 VALILQSILT  379 (433)
T ss_pred             HHHHHHHhhe
Confidence            6555544443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.43  E-value=0.71  Score=43.36  Aligned_cols=152  Identities=11%  Similarity=0.038  Sum_probs=80.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHH---HHHHh
Q psy17630        141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA---IYIIV  217 (372)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  217 (372)
                      .+.....-.+..++.++..|...||..|.+....+.+..-++..+....+............+.+....++.   ..+..
T Consensus        40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i  119 (432)
T PF06963_consen   40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI  119 (432)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Confidence            444555667777888888999999999999887777666544444333322221110100001122111111   11111


Q ss_pred             hcccccccceeeeccC----C--CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhh
Q psy17630        218 FSVGFGPIPGVMMGEL----F--TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKT  291 (372)
Q Consensus       218 ~~~~~~~~~~~~~~e~----~--p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (372)
                      ..........+.--|+    .  +++.....++...-+=.+...++|.                               .
T Consensus       120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl-------------------------------~  168 (432)
T PF06963_consen  120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPL-------------------------------F  168 (432)
T ss_pred             HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH-------------------------------H
Confidence            1111111111222222    2  2334455666665555667888888                               7


Q ss_pred             hHHHHHhcccchhhHHHHHHHHHHHhhhheec
Q psy17630        292 FDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV  323 (372)
Q Consensus       292 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  323 (372)
                      .+.+.+..+......+.++..+++..+=++++
T Consensus       169 vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l  200 (432)
T PF06963_consen  169 VGLLMTFASPVIAAIFIAGWNLASVFVEYFLL  200 (432)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88787777777677777777777766554443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG4686|consensus

Probab=95.35  E-value=0.0042  Score=53.69  Aligned_cols=119  Identities=13%  Similarity=0.038  Sum_probs=77.9

Q ss_pred             HHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHH
Q psy17630        129 RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLP  207 (372)
Q Consensus       129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (372)
                      ++-.+.+....+..++.++.+.-.++-++++|++.|| +|-|...++-+....++-++++.-.+.+         ..|..
T Consensus        69 ~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~---------aFw~M  139 (459)
T KOG4686|consen   69 DFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISH---------AFWTM  139 (459)
T ss_pred             hhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHH---------HHHHH
Confidence            3334446666677788888888889999999999997 5666555555555555555543321111         24555


Q ss_pred             HHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHH
Q psy17630        208 VASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVV  257 (372)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~  257 (372)
                      ....++++++.- ........|..-.|..++-+..+|+......+|+.+-
T Consensus       140 ~~GRF~FGIGgE-SlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvN  188 (459)
T KOG4686|consen  140 LAGRFLFGIGGE-SLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVN  188 (459)
T ss_pred             HhhheeeccCch-hhhhhhcceeEEEecCccccchhhHHHHHHHhhceee
Confidence            666666655532 2333444777888888888999999888888776543

>KOG3762|consensus

Probab=95.27  E-value=0.029  Score=52.97  Aligned_cols=62  Identities=10%  Similarity=0.137  Sum_probs=52.4

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHH
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI  181 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  181 (372)
                      ...+...++.+.+++|+++.+.+.+...--+..+++.+++|+++||+.+|+.++++..+..+
T Consensus        27 ~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v   88 (618)
T KOG3762|consen   27 FGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV   88 (618)
T ss_pred             ccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            34567788889999999999999999999999999999999999999887776666544433

>KOG1237|consensus

Probab=95.10  E-value=1.2  Score=43.58  Aligned_cols=163  Identities=15%  Similarity=0.120  Sum_probs=92.9

Q ss_pred             hhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHHhhcc--------
Q psy17630        126 YLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLD--------  196 (372)
Q Consensus       126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  196 (372)
                      ...++...++.+...+.-.............+++++++|- +||-+++.++.++..++..++..........        
T Consensus        60 lv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~  139 (571)
T KOG1237|consen   60 LVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKP  139 (571)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCC
Confidence            3334444556555555555666666667778899999997 4898999998888888766665544333211        


Q ss_pred             ccc--ccccc-HHHHHHHHHHHHhhc-ccccccceeeeccCCCcc----hh--hhHHHHHHHHHHHHHHHHHHhhccccC
Q psy17630        197 EKL--VDGLG-LLPVASLAIYIIVFS-VGFGPIPGVMMGELFTPD----VK--GLALGVICILGSLIEFVVVKTVRHRFT  266 (372)
Q Consensus       197 ~~~--~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~----~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (372)
                      ...  ..... -..++...+.....+ .+.-+....+-+|-++..    .+  ..-+...+...+.+..++-.       
T Consensus       140 ~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t-------  212 (571)
T KOG1237|consen  140 GGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT-------  212 (571)
T ss_pred             CCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH-------
Confidence            000  01111 111222222222222 233344446778888722    22  34556666666766666655       


Q ss_pred             CcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhh
Q psy17630        267 PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV  319 (372)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  319 (372)
                                              +..+..+..+|...|.+..+..+++.++.
T Consensus       213 ------------------------~~vyiq~~~~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  213 ------------------------VLVYIQDNVGWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             ------------------------HHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence                                    55556677888887777766665555443

>KOG3098|consensus

Probab=95.01  E-value=0.48  Score=44.64  Aligned_cols=109  Identities=14%  Similarity=0.070  Sum_probs=82.3

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHH
Q psy17630        137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII  216 (372)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (372)
                      ++..-...+++......+++++++.+.|+.|.|..+.++........+.+...             +.+.....-++.++
T Consensus        48 ~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-------------N~y~~yfssallG~  114 (461)
T KOG3098|consen   48 SAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-------------NSYYLYFSSALLGF  114 (461)
T ss_pred             CCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-------------chHHHHHHHHHhhh
Confidence            33333445788888999999999999999999999999987777666554332             35667777778888


Q ss_pred             hhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      +.+..+.... .|++|..+++.+.+-.++.-.....+.++++.
T Consensus       115 Gaallw~GqG-~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi  156 (461)
T KOG3098|consen  115 GAALLWTGQG-GYLTSNSTRETIERNISIFWAIGQSSLIIGGI  156 (461)
T ss_pred             hHHheecccc-eehhhcCChhhHHHHHHHHHHHHHHHHHhhhH
Confidence            8776666555 88999999888888888877777666666654

>KOG4332|consensus

Probab=94.87  E-value=0.035  Score=47.72  Aligned_cols=59  Identities=12%  Similarity=-0.081  Sum_probs=45.6

Q ss_pred             hhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630        126 YLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG  184 (372)
Q Consensus       126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~  184 (372)
                      |.-++.+.+|+...+++.+........++...+.|-++||-|||+..+.-++...++++
T Consensus        59 YvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi  117 (454)
T KOG4332|consen   59 YVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI  117 (454)
T ss_pred             eeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH
Confidence            33334566788888999888888888888889999999999999987766665555544

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=94.86  E-value=0.55  Score=40.37  Aligned_cols=14  Identities=7%  Similarity=0.185  Sum_probs=10.8

Q ss_pred             hhHHHHHHhhhhHHHHH
Q psy17630         16 YEDYTIICLSCLVIPVL   32 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i   32 (372)
                      ||+++.+.   +++..+
T Consensus        40 W~~I~si~---~lL~~I   53 (267)
T PF07672_consen   40 WQWILSIF---ILLIFI   53 (267)
T ss_pred             HHHHHHHH---HHHHHH
Confidence            99999999   555544

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=94.76  E-value=0.083  Score=49.80  Aligned_cols=55  Identities=7%  Similarity=0.038  Sum_probs=32.0

Q ss_pred             cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .+..++...+++...+. .+.....+.++..++++|..+-.+...+-.+|-.++..
T Consensus       372 d~~~~~~~~l~gltnGy-~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~  426 (437)
T TIGR00939       372 DAYFIILMLLFGFSNGY-LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAV  426 (437)
T ss_pred             cHHHHHHHHHHHHhhhH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445554444332 23344466778888888877777766666555555554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.71  E-value=0.25  Score=45.69  Aligned_cols=45  Identities=7%  Similarity=0.025  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHH
Q psy17630        144 GQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGY  188 (372)
Q Consensus       144 ~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  188 (372)
                      +...-.+-.++..+++.++.+|+.-+.-......++.+++++.++
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~  108 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAF  108 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheee
Confidence            444445566677778889999886544455555566666665544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=94.45  E-value=0.35  Score=45.60  Aligned_cols=29  Identities=10%  Similarity=0.170  Sum_probs=23.8

Q ss_pred             eeeccCCCcchhhhHHHHHHHHHHHHHHH
Q psy17630        228 VMMGELFTPDVKGLALGVICILGSLIEFV  256 (372)
Q Consensus       228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~  256 (372)
                      ++-+.+.++..-|+.+.+.|...++|+--
T Consensus       428 AFharISDP~IGGTYMTLLNTvSNLGGtW  456 (544)
T PF13000_consen  428 AFHARISDPAIGGTYMTLLNTVSNLGGTW  456 (544)
T ss_pred             HHHhhccCcccchHHHHHHHHHHhcCCCc
Confidence            55677788899999999999998888743

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=92.85  E-value=0.024  Score=50.89  Aligned_cols=113  Identities=12%  Similarity=-0.002  Sum_probs=2.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHHHHHHHHHHHHHHhhcc-ccccccccHHHHHHHHHHHHhhccc
Q psy17630        144 GQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFYLLKLD-EKLVDGLGLLPVASLAIYIIVFSVG  221 (372)
Q Consensus       144 ~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  221 (372)
                      ....+.++..+|..+.++.--+- .+|.+. +..+.=.+...++.......... .+..-.+.+..++...+++...| .
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNG-y  264 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNG-Y  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccc-h
Confidence            45567888889988887642111 233333 22222222222211111110000 00001122333333444433333 2


Q ss_pred             ccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHH
Q psy17630        222 FGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVV  258 (372)
Q Consensus       222 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~  258 (372)
                      .......+.++..++++|..+-.+....-..|-.+|.
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs  301 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGS  301 (309)
T ss_dssp             --HHHH-------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2345556778888888886665555555444444433

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=92.57  E-value=5.6  Score=37.71  Aligned_cols=123  Identities=10%  Similarity=-0.083  Sum_probs=74.8

Q ss_pred             CCCChhhHHHHHHH-HHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcc-ccc----------cc-c-
Q psy17630        137 KIISPNYGQNIVGF-IQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD-EKL----------VD-G-  202 (372)
Q Consensus       137 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~-~-  202 (372)
                      +++...++=...-+ ++++..++..++.++..|.+++...+.....+.+++++..++..+. +++          .+ . 
T Consensus        59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l  138 (509)
T COG3202          59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL  138 (509)
T ss_pred             cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence            44455555444444 6678888999999999999998887777777777777665533211 000          00 0 


Q ss_pred             -------ccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        203 -------LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       203 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                             +.|.......+.-.-.+...+-+.|..+.|.+..++-.+-.++.+..++++..+++.
T Consensus       139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~  202 (509)
T COG3202         139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGE  202 (509)
T ss_pred             eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHH
Confidence                   002111111111111122233355677889998888888899988888888777766

>KOG3574|consensus

Probab=92.48  E-value=2  Score=39.33  Aligned_cols=66  Identities=17%  Similarity=0.062  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHh-----hcCCcchhhH
Q psy17630        105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD-----KAGRRPLLLI  174 (372)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~grr~~~~~  174 (372)
                      .....+++. .+..- .......|.+++.-|.|-++.+.......=  .---+++..+.|     |+|||+.-++
T Consensus        33 illLl~LYl-lQGiP-~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvv  103 (510)
T KOG3574|consen   33 ILLLLFLYL-LQGIP-LGLIGAIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVV  103 (510)
T ss_pred             HHHHHHHHH-HcCCc-hhHhhhhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceee
Confidence            333333443 33433 344448888888777776665554433221  123467888888     9999987554

>KOG0637|consensus

Probab=91.63  E-value=1.4  Score=41.19  Aligned_cols=35  Identities=17%  Similarity=0.105  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhH
Q psy17630        143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI  177 (372)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  177 (372)
                      +-..+..+...+.+...-++++|+|-|+.+..+..
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~  370 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVN  370 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhH
Confidence            34566777788888999999999995554444433

>PRK03612 spermidine synthase; Provisional

Probab=91.21  E-value=4.2  Score=39.47  Aligned_cols=30  Identities=10%  Similarity=0.091  Sum_probs=20.9

Q ss_pred             CCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q psy17630        135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVD  164 (372)
Q Consensus       135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  164 (372)
                      |.+....+.+.+.+.++..+|+.+++++.+
T Consensus        46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~   75 (521)
T PRK03612         46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLR   75 (521)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            655556666777777777788877777653

>KOG1479|consensus

Probab=89.39  E-value=1.5  Score=40.39  Aligned_cols=50  Identities=6%  Similarity=-0.146  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHH
Q psy17630        205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF  255 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~  255 (372)
                      ++.+....+++...+ -.+.+...+.++..|++++-.+-.+...+-..|-+
T Consensus       344 ~~~~~l~~~lglsnG-Yltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~  393 (406)
T KOG1479|consen  344 GWFIFLMSLLGLSNG-YLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLA  393 (406)
T ss_pred             hHHHHHHHHHHhccc-hHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            444444444433332 23455557778888888776655555444433333

>KOG1479|consensus

Probab=88.90  E-value=19  Score=33.48  Aligned_cols=44  Identities=9%  Similarity=0.014  Sum_probs=21.1

Q ss_pred             hHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHH----HHHHHHHHHhh
Q psy17630        120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVI----MTFFSSLLVDK  165 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~----~~~~~g~l~dr  165 (372)
                      .+.+..-.+++.+++ +.+.  ....+....+.+.+    ....-.++.-|
T Consensus        34 WN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~   82 (406)
T KOG1479|consen   34 WNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTR   82 (406)
T ss_pred             hHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666665 3222  33333334444333    33444444555

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=88.45  E-value=3.9  Score=38.87  Aligned_cols=49  Identities=12%  Similarity=0.048  Sum_probs=26.0

Q ss_pred             HhhHHHHHh--cCCCCCChhhHHHHHHHHHHHHHHHHHHHH-----hhcCCcchhhHh
Q psy17630        125 FYLKRILIA--TNSKIISPNYGQNIVGFIQVIMTFFSSLLV-----DKAGRRPLLLIS  175 (372)
Q Consensus       125 ~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~-----dr~grr~~~~~~  175 (372)
                      .-.|.++++  .+.+-.+.+..+....=.  ---+++.++.     .|+|||+.-++-
T Consensus        21 gsiPflL~~~~~~~sy~q~~~fSla~~Pf--SlKlLWaPiVDs~y~~~~GRRKSWiiP   76 (544)
T PF13000_consen   21 GSIPFLLQSMAKKVSYSQQAIFSLASYPF--SLKLLWAPIVDSVYSKRIGRRKSWIIP   76 (544)
T ss_pred             ccchhhhccccCCCChhHheeeeeeechh--HHHHhhhhhhhhhcccccCCcchhhhH
Confidence            456777777  355555554433221110  0123445444     579999986653

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=86.45  E-value=19  Score=34.18  Aligned_cols=31  Identities=10%  Similarity=0.037  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCcchhhHhhH
Q psy17630        147 IVGFIQVIMTFFSSLLVDKAGRRPLLLISDI  177 (372)
Q Consensus       147 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  177 (372)
                      ...+..++..+..-.+..|+..|.-+..+++
T Consensus        53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv   83 (437)
T TIGR00939        53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLV   83 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhccCccchhHHHHH
Confidence            3344444445555555566655433444433

>KOG3574|consensus

Probab=85.25  E-value=17  Score=33.65  Aligned_cols=29  Identities=14%  Similarity=0.200  Sum_probs=24.4

Q ss_pred             eeeccCCCcchhhhHHHHHHHHHHHHHHH
Q psy17630        228 VMMGELFTPDVKGLALGVICILGSLIEFV  256 (372)
Q Consensus       228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~  256 (372)
                      +..+.+.|+...|+-+.+.+...++|+--
T Consensus       392 af~aqisdp~iggTymTlLNTLsnLGg~w  420 (510)
T KOG3574|consen  392 AFHAQISDPAIGGTYMTLLNTLSNLGGNW  420 (510)
T ss_pred             HHHhhcCCcccCccHHHHHHHHHHhcCCc
Confidence            56678889999999999999998887744

>KOG2881|consensus

Probab=85.00  E-value=5.8  Score=33.91  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=18.0

Q ss_pred             HHHH-HHHhhcCCcchhhHhhHHHHHH
Q psy17630        157 FFSS-LLVDKAGRRPLLLISDICMAIC  182 (372)
Q Consensus       157 ~~~g-~l~dr~grr~~~~~~~~~~~~~  182 (372)
                      .++| .++.|+.-|.+.++|.+++.+.
T Consensus       257 VigGk~lAskIS~rtVt~~ggi~Fi~F  283 (294)
T KOG2881|consen  257 VIGGKYLASKISVRTVTLIGGILFIIF  283 (294)
T ss_pred             HhhhHHHhhhheeEEEEEecchhHHHH
Confidence            3444 6788999888888776655544

>PRK10697 DNA-binding transcriptional activator PspC; Provisional

Probab=81.98  E-value=2  Score=32.12  Aligned_cols=31  Identities=6%  Similarity=0.131  Sum_probs=18.8

Q ss_pred             hhHHHHHHhhhh--HHHHHHHHHhhcccCCChh
Q psy17630         16 YEDYTIICLSCL--VIPVLNLLVFLIVAPETPV   46 (372)
Q Consensus        16 Wr~~f~i~~~~~--~~~~i~~~~~~~~lpesp~   46 (372)
                      -|.+|.+...++  .+++++-+++++.+|+.|.
T Consensus        36 VRl~~vl~~~~~~~~~~~~~Yi~l~~~lp~~P~   68 (118)
T PRK10697         36 VRIIVVLSIFFGLFVFTLVAYIILSFALDPMPD   68 (118)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhccCCcc
Confidence            577766552222  2345556677888988774

>KOG4332|consensus

Probab=81.01  E-value=23  Score=31.08  Aligned_cols=101  Identities=5%  Similarity=0.006  Sum_probs=56.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcCCc--chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhh
Q psy17630        141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRR--PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVF  218 (372)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (372)
                      -+.+.+-+.+..++|+-+..++..|-..|  ..+.+...+......+........    ++ ..++..-++.++++-.+.
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vs----P~-kes~~~s~i~F~~~E~cv  358 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVS----PS-KESPSESLIGFCLFEACV  358 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccC----CC-cCCchHHHHHHHHHHHHH
Confidence            35677777778888888877776654333  334444444443333322222111    11 223444466666666666


Q ss_pred             cccccccceeeeccCCCcchhhhHHHHHH
Q psy17630        219 SVGFGPIPGVMMGELFTPDVKGLALGVIC  247 (372)
Q Consensus       219 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  247 (372)
                      +..+.++. -+=++..|.+.|++.+.+.-
T Consensus       359 GlfwPSim-kmRsqyIPEearstimNfFR  386 (454)
T KOG4332|consen  359 GLFWPSIM-KMRSQYIPEEARSTIMNFFR  386 (454)
T ss_pred             hhcchHHH-HHHHhhCCHHHHhhhhhhee
Confidence            66665555 45577889999987765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	372
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		3e-20

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 141/322 (43%), Gaps = 39/322 (12%)
Query: 29  IPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQK 88
           IP L  L+ L   PE+P +L+S+ +++ AE  L  + G N      + E++  LD   +K
Sbjct: 208 IPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG-NTLATQAVQEIKHSLD-HGRK 265
Query: 89  KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIV 148
               + ++     V   ++ V L  F  F GINVV++Y   +     +          IV
Sbjct: 266 TGGRLLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIV 321
Query: 149 GFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPV 208
           G I +  T  + + VDK GR+PL +I  + MAI + +LG  FY            G++ +
Sbjct: 322 GVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--------TQAPGIVAL 373
Query: 209 ASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPD 268
            S+  Y+  F++ +GP+  V++ E+F   ++G AL +      L  + V  T        
Sbjct: 374 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWT-------- 425
Query: 269 VKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328
                            F ++     +   F  G ++  +    ++   F++  VPETK 
Sbjct: 426 -----------------FPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468
Query: 329 KSLQQIQDELSGVKKKKKARRT 350
           K+L++++       KK +   T
Sbjct: 469 KTLEELEALWEPETKKTQQTAT 490
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	372
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 31/222 (13%), Positives = 75/222 (33%), Gaps = 62/222 (27%)

Query: 7   LYTYVIGSLYEDYTIICLSCLVIP--VLNLL--------VFLIVAPETPVYLLSKKRRKD 56
           L       +++  ++   S   IP  +L+L+        V ++V  +   Y L +K+ K+
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKE 423

Query: 57  AEKSL----LILRGPN---YDIHGEL-------------DELQKELD------I------ 84
           +  S+    L L+      Y +H  +             D +   LD      I      
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 85  --QAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVI---FYLKRIL--IATNSK 137
               ++      ++ +   ++  I         S S +N +    FY   I        +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 138 IIS------PNYGQNIV-----GFIQVIMTFFSSLLVDKAGR 168
           +++      P   +N++       +++ +      + ++A +
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 59/400 (14%), Positives = 119/400 (29%), Gaps = 108/400 (27%)

Query: 6   ILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILR 65
           ++  +V   L  +Y  +         ++ +      P     +  ++R +    + +   
Sbjct: 78  MVQKFVEEVLRINYKFL---------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-- 126

Query: 66  GPNYDI--HGELDELQKELDIQAQKKKSLVEIY----SNKATVKATIVI--VGLLCFLSF 117
              Y++       +L++ L ++ +  K+++ I     S K T  A  V     + C + F
Sbjct: 127 -AKYNVSRLQPYLKLRQAL-LELRPAKNVL-IDGVLGSGK-TWVALDVCLSYKVQCKMDF 182

Query: 118 SGINVVIFYLK--------RILIATNS--KIISPNYGQ------NIVGFIQVIMTFFSSL 161
                 IF+L          +L         I PN+        NI   I  I      L
Sbjct: 183 K-----IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 162 LVDKAGRRPLLLISDICMAICIGALGYYFYLLKL--DEKLVDGL---------------G 204
           L  K     LL++ ++  A    A      +L     +++ D L                
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG-SLIEFVVV-KTVR 262
           L P    ++ +         +P          +V       + I+  S+ + +      +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLP---------REVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 263 HRFTPDVKGLALGVICILGSLIE-FVVVKTFDDVERAFGTGVAFGTF--------AVYCI 313
           H     +            ++IE  + V    +  + F        F         +  +
Sbjct: 349 HVNCDKLT-----------TIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSL 394

Query: 314 I----GTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARR 349
           I        V  VV +    SL         V+K+ K   
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSL---------VEKQPKEST 425

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.74
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.63
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.62
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.61
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.57
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.54
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.51
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.47
2xut_A	524	Proton/peptide symporter family protein; transport	99.45
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.39
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.34
2xut_A	524	Proton/peptide symporter family protein; transport	99.05
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.97

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.97  E-value=1.6e-29  Score=240.51  Aligned_cols=279  Identities=27%  Similarity=0.459  Sum_probs=203.4

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.+.+.    .++.+..++..+++||||+|+..+++.+++++.+++.+.++...++..+. ++...++ ++.......
T Consensus       199 ~~~~~~~~----~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~  272 (491)
T 4gc0_A          199 WRYMFASE----CIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEI-KHSLDHG-RKTGGRLLM  272 (491)
T ss_dssp             HHHHHHTT----HHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHTTHHHH
T ss_pred             hHHHhhhh----hhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHH-HHHHHhh-hhhhhHHHH
Confidence            88888877    45555577888899999999999999999999988876543322221111 1111111 111111222


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLIS  175 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~  175 (372)
                      ++    .++.........+.+..+.+...+|.+.+.+..+.+..+........++...++.++++++.||+|||+.++.+
T Consensus       273 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~  348 (491)
T 4gc0_A          273 FG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG  348 (491)
T ss_dssp             SC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHH
T ss_pred             hc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccc
Confidence            22    23455555666677777888899999999988887777777788888999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHH
Q psy17630        176 DICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF  255 (372)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~  255 (372)
                      .....++.+.++.......        ..+..+....++..+++.+++++.+.+.+|++|++.|++++++.+..++++++
T Consensus       349 ~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~  420 (491)
T 4gc0_A          349 ALGMAIGMFSLGTAFYTQA--------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY  420 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccc--------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence            8888887776655432221        12344455555556667778888889999999999999999999999999999


Q ss_pred             HHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHH------HHhcccchhhHHHHHHHHHHHhhhheeccCCCCC
Q psy17630        256 VVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDV------ERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNK  329 (372)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  329 (372)
                      +.+.                               ..+.+      ....++...|++++++++++.++.++++||||++
T Consensus       421 i~~~-------------------------------~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          421 FVSW-------------------------------TFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             HHHT-------------------------------HHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             HHHH-------------------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence            8887                               44433      2334555688899999999999888899999999


Q ss_pred             CHHHHHHHhccCcc
Q psy17630        330 SLQQIQDELSGVKK  343 (372)
Q Consensus       330 ~~~~~~~~~~~~~~  343 (372)
                      ++||+++..+++++
T Consensus       470 tLeei~~~f~~~~~  483 (491)
T 4gc0_A          470 TLEELEALWEPETK  483 (491)
T ss_dssp             CHHHHGGGTC----
T ss_pred             CHHHHHHHhCCCCc
Confidence            99999887765544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.74  E-value=1.5e-18  Score=162.67  Aligned_cols=254  Identities=13%  Similarity=0.053  Sum_probs=159.9

Q ss_pred             echhhHHhhhhh-------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHH
Q psy17630          4 SGILYTYVIGSL-------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELD   76 (372)
Q Consensus         4 ~G~~~~~~i~~~-------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~   76 (372)
                      +|.++++.++..       ||+.|++.   +++.++..++.++++||+|+....+++.+.           +.+.+++.+
T Consensus       166 ~g~~~g~~~~~~l~~~~g~w~~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~  231 (451)
T 1pw4_A          166 VGGGIPPLLFLLGMAWFNDWHAALYMP---AFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDDYN  231 (451)
T ss_dssp             HHHTSHHHHHHHHHHHTCCSTTCTHHH---HHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC------
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------cccccccch
Confidence            444555544432       99999999   777777677777889999874321111100           000000000


Q ss_pred             HHHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHH
Q psy17630         77 ELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIM  155 (372)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~  155 (372)
                        ++..+....++...++.++++..+...+     ..+...........+.|.++++ .|++..+.+.......++.+++
T Consensus       232 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  304 (451)
T 1pw4_A          232 --EKAEQELTAKQIFMQYVLPNKLLWYIAI-----ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPG  304 (451)
T ss_dssp             ---------CCTHHHHHHTSSCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             --hhhhcccccccchHHHHHcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence              0000000111112355666553332222     2222222345667788888887 6888889999999999999999


Q ss_pred             HHHHHHHHhhc--CCcchhhHhhHHHH-HHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeecc
Q psy17630        156 TFFSSLLVDKA--GRRPLLLISDICMA-ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGE  232 (372)
Q Consensus       156 ~~~~g~l~dr~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  232 (372)
                      .++.|++.||+  |||+.+..+..+.. ++.+.+...    .      ..+.+.......+.+.+.+. ..+....++.|
T Consensus       305 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~  373 (451)
T 1pw4_A          305 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----P------AGNPTVDMICMIVIGFLIYG-PVMLIGLHALE  373 (451)
T ss_dssp             HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----C------TTCHHHHHHHHHHHHHHHTH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----c------ccCHHHHHHHHHHHHHHHhc-hHHHHHHHHHH
Confidence            99999999999  99998877766555 333332111    0      01223333344444433332 23344478899


Q ss_pred             CCCcchhhhHHHHHHHHHHH-HHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHH
Q psy17630        233 LFTPDVKGLALGVICILGSL-IEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY  311 (372)
Q Consensus       233 ~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  311 (372)
                      .+|++.|++++++.+....+ +..++|.                               +.+.+.+..|++..+++.+++
T Consensus       374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~-------------------------------~~g~l~~~~g~~~~~~~~~~~  422 (451)
T 1pw4_A          374 LAPKKAAGTAAGFTGLFGYLGGSVAASA-------------------------------IVGYTVDFFGWDGGFMVMIGG  422 (451)
T ss_dssp             TSCTTHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHSSCSHHHHHHHHHH
T ss_pred             HhchhhhhhHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHhcCcHHHHHHHHHH
Confidence            99999999999999999999 9999999                               889999999998888888888


Q ss_pred             HHHHHhhhh
Q psy17630        312 CIIGTFFVY  320 (372)
Q Consensus       312 ~~~~~~~~~  320 (372)
                      .+++.++.+
T Consensus       423 ~~~~~~~~~  431 (451)
T 1pw4_A          423 SILAVILLI  431 (451)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776655

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.63  E-value=8.4e-16  Score=143.94  Aligned_cols=168  Identities=12%  Similarity=0.032  Sum_probs=134.1

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ........|.+.++. .+..+.++..+...++..++.+++|+++||+|||++++++.++.+++.+++++.... .     
T Consensus        44 ~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~-----  116 (451)
T 1pw4_A           44 RKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-T-----  116 (451)
T ss_dssp             HTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-H-----
T ss_pred             HHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-c-----
Confidence            344566778888888 899999999999999999999999999999999999999999998888877652111 1     


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                        .+.+..++...+.+.+.+.... ...+++.|.+|+++|++++++.+....++..++|.                    
T Consensus       117 --~~~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~--------------------  173 (451)
T 1pw4_A          117 --SSIAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL--------------------  173 (451)
T ss_dssp             --SSSSHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHH--------------------
T ss_pred             --ccHHHHHHHHHHHHHHhhhccc-hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence              1244555666666666554443 44488999999999999999999999999999988                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        280 LGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                                 +.+.+.+..+ |++.|++.++++++..++.++++||+++
T Consensus       174 -----------~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          174 -----------LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             -----------HHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             -----------HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence                       7777778888 9999999988888777766667777543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.62  E-value=1.6e-14  Score=134.67  Aligned_cols=176  Identities=13%  Similarity=-0.026  Sum_probs=121.8

Q ss_pred             hhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHH-HHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcC
Q psy17630         90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG  167 (372)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g  167 (372)
                      .+++++++++..+...+..++...     .......+.|.+ .++. |++..+.+.......++.+++.++.|+++||+|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~  323 (438)
T 3o7q_A          249 ASLSRLARIRHWRWAVLAQFCYVG-----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFA  323 (438)
T ss_dssp             HHHHHHTTCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hhHHHHHhChHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456778887744443332222221     234556677777 7776 989999999999999999999999999999999


Q ss_pred             CcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHH
Q psy17630        168 RRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVIC  247 (372)
Q Consensus       168 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  247 (372)
                      ||+.+..+.++..++.+++...     .        .........+.+.+.+.. .+..+.+..|.+|++ |+.+.++..
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~  388 (438)
T 3o7q_A          324 PHKVLAAYALIAMALCLISAFA-----G--------GHVGLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV  388 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-----C--------HHHHHHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHc-----C--------CcHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHHH
Confidence            9999988887777766554332     0        112223334444444433 345557778999876 888888776


Q ss_pred             HHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHh
Q psy17630        248 ILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTF  317 (372)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~  317 (372)
                       .+.+++.++|.                               +.+.+.+..| ++..+.+.+++.++..+
T Consensus       389 -~~~~g~~~~~~-------------------------------~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          389 -MTIIGGGIVTP-------------------------------VMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             -HTTHHHHHHHH-------------------------------HHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHH-------------------------------HHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence             66788999998                               8888999888 88787766555444443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.61  E-value=1.9e-16  Score=147.20  Aligned_cols=145  Identities=13%  Similarity=0.148  Sum_probs=100.2

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhc
Q psy17630        140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFS  219 (372)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (372)
                      ..+.......++.+++.++.|+++||+|||+++..+..+.++..+.+...     .       +.+..+....+.+.+..
T Consensus       260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-----~-------~~~~~~~~~~l~~~~~~  327 (417)
T 2cfq_A          260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----T-------SALEVVILKTLHMFEVP  327 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-----C-------SHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-----c-------cHHHHHHHHHHHHHHHH
Confidence            34566667777888999999999999999999887776666654433211     0       12222222222222222


Q ss_pred             ccccccceeeeccCCCcchhhhHHHHH-HHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHh
Q psy17630        220 VGFGPIPGVMMGELFTPDVKGLALGVI-CILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA  298 (372)
Q Consensus       220 ~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (372)
                      . ..+..+.+++|.+|++.|+++.++. +....+++.++|.                               +.+.+.+.
T Consensus       328 ~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~-------------------------------l~G~l~~~  375 (417)
T 2cfq_A          328 F-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV-------------------------------LAGNMYES  375 (417)
T ss_dssp             H-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTH-------------------------------HHHTHHHH
T ss_pred             H-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhh-------------------------------hHHHHHHh
Confidence            1 1122347889999999999999985 7778899999998                               88888887


Q ss_pred             cccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        299 FGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       299 ~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                      .|+...|.+.+++++++.++.++..||+++
T Consensus       376 ~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          376 IGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            887778888888888877766656665443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.57  E-value=1.8e-14  Score=134.35  Aligned_cols=130  Identities=12%  Similarity=-0.039  Sum_probs=105.3

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||++++.+.++.+++.++.....  ..     
T Consensus        42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~-----  114 (438)
T 3o7q_A           42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA--EI-----  114 (438)
T ss_dssp             HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH--HT-----
T ss_pred             HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc--cc-----
Confidence            45667778888899999999999999999999999999999999999999999999999988887763221  11     


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                        .+.+..++...+.+.+.+.... ...++++|.+|+++|+.++++.+....++..+++.
T Consensus       115 --~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  171 (438)
T 3o7q_A          115 --MNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV  171 (438)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --ccHHHHHHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence              1234555556666665554443 34488999999999999999999999999999988

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.54  E-value=1e-14  Score=133.44  Aligned_cols=165  Identities=14%  Similarity=0.079  Sum_probs=130.8

Q ss_pred             hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630        120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL  199 (372)
Q Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
                      ........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+......         
T Consensus        16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------   86 (375)
T 2gfp_A           16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS---------   86 (375)
T ss_dssp             HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc---------
Confidence            45566677888888899999999999999999999999999999999999999999998888887765541         


Q ss_pred             cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630        200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (372)
                         +.+..+....+.+.+.+.. .+....++.|.+|+++|++++++.+....++..++|.                    
T Consensus        87 ---~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------------  142 (375)
T 2gfp_A           87 ---SLTVLIAASAMQGMGTGVG-GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPL--------------------  142 (375)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHH--------------------
T ss_pred             ---cHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHH--------------------
Confidence               1234444445554444433 3444478899999999999999999999999999998                    


Q ss_pred             hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                                 +.+.+.+..+|+..+.+.+++.++..+...+..||+++
T Consensus       143 -----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          143 -----------IGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             -----------HHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             -----------HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence                       77777777789999988888887777766667777644

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.51  E-value=1.5e-13  Score=130.14  Aligned_cols=169  Identities=11%  Similarity=0.017  Sum_probs=108.4

Q ss_pred             HHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhh-----HhhHHHHHHHHHHHHHHHHhhccc
Q psy17630        124 IFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL-----ISDICMAICIGALGYYFYLLKLDE  197 (372)
Q Consensus       124 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  197 (372)
                      ..+.+.+.++ .+.+..+.+.......+..+++.++.+++.||+|||+...     .+..+.+++.+++.........  
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  380 (491)
T 4aps_A          303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT--  380 (491)
T ss_dssp             GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC--
T ss_pred             cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence            3345555555 4666677888888999999999999999999999987655     5555555555544333211110  


Q ss_pred             cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhh
Q psy17630        198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVI  277 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (372)
                       ..+.+.+.......+.+.+.+.. .+..+.++.|.+|++.|+++.++.+....+++.+++.                  
T Consensus       381 -~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~------------------  440 (491)
T 4aps_A          381 -SGKVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ------------------  440 (491)
T ss_dssp             -CTTCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH------------------
T ss_pred             -CCCccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence             01123344444444554444433 3445588999999999999999999999999999988                  


Q ss_pred             hhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630        278 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN  328 (372)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  328 (372)
                                   +.+.+.+ .++...+.+.++++++..++.+++.++.++
T Consensus       441 -------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (491)
T 4aps_A          441 -------------LVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG  477 (491)
T ss_dssp             -------------HGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred             -------------HHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         5554433 455567888888877777776655555443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.47  E-value=2.4e-13  Score=128.79  Aligned_cols=157  Identities=15%  Similarity=0.122  Sum_probs=121.1

Q ss_pred             hHHHHHhhHHHHHh------cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHH
Q psy17630        120 INVVIFYLKRILIA------TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYL  192 (372)
Q Consensus       120 ~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~  192 (372)
                      ++....+.+.++.+      +|.+..+.++..+...++..++.+++|+++|| +|||+++..+.++.+++.+++...   
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---  105 (491)
T 4aps_A           29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP---  105 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC---
T ss_pred             HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh---
Confidence            34444455555444      79999999999999999999999999999999 899999999988888887765432   


Q ss_pred             hhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcch--hhhHHHHHHHHHHHHHHHHHHhhccccCCccc
Q psy17630        193 LKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVVKTVRHRFTPDVK  270 (372)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (372)
                               .+.+..++...+.+.+.+... +...++++|.+|++.  |+.+.++.+....++..++|.           
T Consensus       106 ---------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~-----------  164 (491)
T 4aps_A          106 ---------FGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPL-----------  164 (491)
T ss_dssp             ---------CSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred             ---------hhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHH-----------
Confidence                     124455555556555555433 344488899999988  777888888999999999998           


Q ss_pred             ccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        271 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                                          +.+.+.+..+|++.|++.++..+++.+..+
T Consensus       165 --------------------~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          165 --------------------IVGAAQEAAGYHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             --------------------HHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                                888888889999999888776666655544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.45  E-value=1.1e-12  Score=125.30  Aligned_cols=158  Identities=16%  Similarity=0.126  Sum_probs=119.1

Q ss_pred             hHHHHHhhHHHH-HhcC------CCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHHHHHHHHHHHHH
Q psy17630        120 INVVIFYLKRIL-IATN------SKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFY  191 (372)
Q Consensus       120 ~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~  191 (372)
                      ++....+.+.++ ++.|      .+..+.++..+...++..++.+++|+++||+ |||+++..+.++.+++.+++.+.  
T Consensus        28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--  105 (524)
T 2xut_A           28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--  105 (524)
T ss_dssp             HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence            344455555554 4568      9999999999999999999999999999999 99999999988888877765443  


Q ss_pred             HhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHH---HHHHHHHHHHHHHHhhccccCCc
Q psy17630        192 LLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGV---ICILGSLIEFVVVKTVRHRFTPD  268 (372)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  268 (372)
                         .      .+.+..++...+.+.+.+... +...+++.|.+|++.|++..+.   .+....++..++|.         
T Consensus       106 ---~------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~---------  166 (524)
T 2xut_A          106 ---E------HSVQGFYTGLFLIALGSGGIK-PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL---------  166 (524)
T ss_dssp             ---S------SCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             ---c------ccHHHHHHHHHHHHHhccccc-hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence               0      023444455555555544433 4444888999999999776665   78888899999998         


Q ss_pred             ccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630        269 VKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY  320 (372)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  320 (372)
                                            +.+.+.+..+|+..|.+.+++.++..+...
T Consensus       167 ----------------------~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          167 ----------------------SMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             ----------------------TSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------HHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence                                  777788888999999888877766655544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.39  E-value=2.6e-14  Score=130.65  Aligned_cols=202  Identities=14%  Similarity=0.082  Sum_probs=122.7

Q ss_pred             echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630          4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE   77 (372)
Q Consensus         4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   77 (372)
                      +|..+++.++..      ||+.|++.   +++.++..+...+.+||+|+..   +++                       
T Consensus       135 ~g~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~-----------------------  185 (375)
T 2gfp_A          135 VSPLLAPLIGGLLDTMWNWRACYLFL---LVLCAGVTFSMARWMPETRPVD---APR-----------------------  185 (375)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHH---HHHHHHHHCCCCCSSCCCSTTT---CCC-----------------------
T ss_pred             HHHHhhHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHHHHHCcccCCCC---ccc-----------------------
Confidence            455555555544      99999998   7777775555777889987521   000                       


Q ss_pred             HHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHH
Q psy17630         78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMT  156 (372)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~  156 (372)
                              ++.+.++++.+++|..+...+....     ..........+.|.+.++ .|.+..+.+.......++.+++.
T Consensus       186 --------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  252 (375)
T 2gfp_A          186 --------TRLLTSYKTLFGNSGFNCYLLMLIG-----GLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA  252 (375)
T ss_dssp             --------CCTTTCSTHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             --------ccHHHHHHHHhcCcchHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence                    0112234556666533332222221     222244556677776666 68888888999999999999999


Q ss_pred             HHHHHHHhhcCCcchhhHhhHH-HHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCC
Q psy17630        157 FFSSLLVDKAGRRPLLLISDIC-MAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT  235 (372)
Q Consensus       157 ~~~g~l~dr~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  235 (372)
                      ++.+++.||++|+  +..+... ...+......... ...       +.+.......+.+.+.+... +....+..|..|
T Consensus       253 ~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p  321 (375)
T 2gfp_A          253 WFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF-GVM-------NVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP  321 (375)
T ss_dssp             HHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH-HHH-------HHHHHHHHHHHHHHHHHHTS-STTHHHHHTHHH
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh-ccc-------cHHHHHHHHHHHHHHHHHhh-HHHHHHHHHhCC
Confidence            9999999999873  2333222 1211111111110 000       12333344444444544433 444478899998


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        236 PDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       236 ~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                       +.|+++.++.+....+++.++|.
T Consensus       322 -~~~g~~~g~~~~~~~~g~~~~~~  344 (375)
T 2gfp_A          322 -FLAGTAGALVGGLQNIGSGVLAS  344 (375)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHCCST
T ss_pred             -cccchHHHHHHHHHHHHHHHHHH
Confidence             89999999999999999998888

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.34  E-value=5.8e-13  Score=126.11  Aligned_cols=119  Identities=13%  Similarity=-0.014  Sum_probs=83.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccc------cccccccHHHHHHHHH
Q psy17630        140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE------KLVDGLGLLPVASLAI  213 (372)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  213 (372)
                      ..++..+...++.++|++++|+++||+|||++++++.++..++.++.++.........      .....+.+..++..++
T Consensus        56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l  135 (491)
T 4gc0_A           56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII  135 (491)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence            3456777788999999999999999999999999999999988887654210000000      0001224455666666


Q ss_pred             HHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .+++.+... +...++++|..|++.|+...++.......+..+++.
T Consensus       136 ~G~g~G~~~-~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~  180 (491)
T 4gc0_A          136 GGIGVGLAS-MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYC  180 (491)
T ss_dssp             HHHHHHHHH-HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhh
Confidence            666655443 344589999999999999999888777666665554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.05  E-value=1.4e-10  Score=110.76  Aligned_cols=55  Identities=7%  Similarity=-0.062  Sum_probs=40.1

Q ss_pred             cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630        204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK  259 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  259 (372)
                      .+..+....+.+.+.+.. .+..+.+..|..|++.|++++++.+....+++.++|.
T Consensus       405 ~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~  459 (524)
T 2xut_A          405 IFWQILPYALLTFGEVLV-SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLL  459 (524)
T ss_dssp             SHHHHHHHHHHHHHHHHH-HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444333 3444578899999999999999999999999999988

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.97  E-value=1.3e-10  Score=107.86  Aligned_cols=61  Identities=16%  Similarity=0.132  Sum_probs=51.7

Q ss_pred             HHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHH
Q psy17630        121 NVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI  181 (372)
Q Consensus       121 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  181 (372)
                      .....+.|.++++ .|.+..+.++..+...++..++++++|+++||+|||++++++..+..+
T Consensus        24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A           24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            3445667777665 699999999999999999999999999999999999999887766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	372
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-05
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.003

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 35/272 (12%), Positives = 69/272 (25%), Gaps = 38/272 (13%)

Query: 65  RGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVI 124
            G       + D      +   Q+  +           K    I     F+      ++ 
Sbjct: 211 CGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 270

Query: 125 FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184
           +    +    +  +   ++   +  +  +  T     + DK  R          M +   
Sbjct: 271 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 330

Query: 185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALG 244
           A   Y+        +             I I     G   + G+   EL      G A G
Sbjct: 331 ATIVYW--------MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 382

Query: 245 VICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVA 304
              + G L                  G ++    I+G  ++             FG    
Sbjct: 383 FTGLFGYL------------------GGSVAASAIVGYTVD------------FFGWDGG 412

Query: 305 FGTFAVYCIIGTFFVYFVVPETKNKSLQQIQD 336
           F       I+    +  V+   K +  Q +Q+
Sbjct: 413 FMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 29/180 (16%), Positives = 50/180 (27%), Gaps = 7/180 (3%)

Query: 105 TIVIVGLLCFLSFSGINVVI----FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSS 160
              + GL  F  F  +         +L  I   + S           +    ++      
Sbjct: 8   NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT---GIIFAAISLFSLLFQPLFG 64

Query: 161 LLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220
           LL DK G R  LL     M +       + +   L   ++ G  +  +     +      
Sbjct: 65  LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPA 124

Query: 221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280
               I  V     F      +   V   LG+ I  ++             G AL +  +L
Sbjct: 125 VEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL 184

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	372
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.71
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.64
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.6
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.23

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=4.9e-18  Score=156.44  Aligned_cols=248  Identities=13%  Similarity=0.062  Sum_probs=147.7

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630         16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI   95 (372)
Q Consensus        16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (372)
                      ||+.|++.   +.+.++..++.+++++|+|+........+.           +.+.+++  ..++..++...++...++.
T Consensus       182 w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~--~~~~~~~~~~~~~~~~~~~  245 (447)
T d1pw4a_         182 WHAALYMP---AFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDD--YNEKAEQELTAKQIFMQYV  245 (447)
T ss_dssp             STTCTHHH---HHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC---------------CCTHHHHHHT
T ss_pred             ccccchhh---hhhHHHHHHHHHHhcccchhhcccchhhhh-----------hhhcccc--hhhccccccchhhHHHHHH
Confidence            99999999   788888778888888888763211111100           0000000  0001111111222334455


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630         96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI  174 (372)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  174 (372)
                      ++++..+......     +......+....+.|.++.+. +.+..+.+.......+..+++.++.|+++||++||+....
T Consensus       246 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  320 (447)
T d1pw4a_         246 LPNKLLWYIAIAN-----VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT  320 (447)
T ss_dssp             SSCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HcCchHHHHHHHh-----hhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc
Confidence            5554222222222     222222445566777776654 7888889999999999999999999999999999876555


Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630        175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE  254 (372)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  254 (372)
                      ......+............       ..+.+...+.....+++.. +..+..+.+..|.+|++.|+++.|+.+..+++++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g  392 (447)
T d1pw4a_         321 GVFFMTLVTIATIVYWMNP-------AGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG  392 (447)
T ss_dssp             HHHHHHHHHHHHHHTTSCC-------TTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHhcc-------cccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            4444333333222211111       1123333333333333322 3334455788999999999999999998888755


Q ss_pred             -HHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheec
Q psy17630        255 -FVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV  323 (372)
Q Consensus       255 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  323 (372)
                       .++|.                               +.+.+.+..||+..+.+.+++++++.++.+++.
T Consensus       393 ~~~~~~-------------------------------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         393 SVAASA-------------------------------IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHHH-------------------------------HHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-------------------------------HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence             55677                               788888999998888888777777766655443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=4.2e-16  Score=143.30  Aligned_cols=163  Identities=13%  Similarity=0.055  Sum_probs=124.6

Q ss_pred             HHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccc
Q psy17630        123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG  202 (372)
Q Consensus       123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (372)
                      +....|. +++.|++..+.++..+...++..++.+++|+++||+|||+++..+.++.+++.++++.......        
T Consensus        44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--------  114 (447)
T d1pw4a_          44 FALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS--------  114 (447)
T ss_dssp             HHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS--------
T ss_pred             HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh--------
Confidence            3444554 4568999999999999999999999999999999999999999999998888887765432222        


Q ss_pred             ccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcc
Q psy17630        203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGS  282 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (372)
                      +.+..++...+.+.+.+...... ..++.|.+|+++|++++++.+....++..+++.                       
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~-----------------------  170 (447)
T d1pw4a_         115 SIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL-----------------------  170 (447)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHH-HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHH-----------------------
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHhhcccccccccccccchhhhhhhh-----------------------
Confidence            23445555556555555444434 478899999999999999999999998888887                       


Q ss_pred             hhhhhhhhhhHHHHHh-cccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630        283 LIEFVVVKTFDDVERA-FGTGVAFGTFAVYCIIGTFFVYFVVPET  326 (372)
Q Consensus       283 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e~  326 (372)
                              ........ .+|+..+++.+.++++..++.+++.+++
T Consensus       171 --------~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         171 --------LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             --------HHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             --------hhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence                    55554444 4788888888888777777666566554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=8.6e-16  Score=138.82  Aligned_cols=153  Identities=13%  Similarity=0.114  Sum_probs=114.0

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHH
Q psy17630        137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII  216 (372)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (372)
                      +....+.......++..++..+.+++.||+|||+.+..+..+.+++.+.+...            .+.+..+....+.+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~  324 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------TSALEVVILKTLHMF  324 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC------------CCHHHHHHHHHHHHH
T ss_pred             chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc------------cccchhhHHHHHHHH
Confidence            34455566777788889999999999999999999998888877776654332            123444444445555


Q ss_pred             hhcccccccceeeeccCCCcchhhhHHHHHH-HHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHH
Q psy17630        217 VFSVGFGPIPGVMMGELFTPDVKGLALGVIC-ILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDV  295 (372)
Q Consensus       217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (372)
                      +.+... +....++.|.+|++.|+++.++.. ....++..++|.                               +.+.+
T Consensus       325 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-------------------------------~~G~l  372 (417)
T d1pv7a_         325 EVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV-------------------------------LAGNM  372 (417)
T ss_dssp             HHHHHH-HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHH-------------------------------HHHHH
T ss_pred             HHHHHH-HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHH
Confidence            544443 344478899999999999999864 456788899998                               88999


Q ss_pred             HHhcccchhhHHHHHHHHHHHhhhheeccCCCCCCHHH
Q psy17630        296 ERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQ  333 (372)
Q Consensus       296 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  333 (372)
                      .+..|++..+++.++++++..++..+.++++++.+.++
T Consensus       373 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         373 YESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            99999998999988888888877776777665555433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.7e-11  Score=109.96  Aligned_cols=70  Identities=14%  Similarity=0.137  Sum_probs=57.8

Q ss_pred             hHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHH
Q psy17630        120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYY  189 (372)
Q Consensus       120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  189 (372)
                      ......+.|.++++ .|.+..+.+++.+...++..++.++.|+++||+|||++++++..+..++.......
T Consensus        23 ~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~   93 (417)
T d1pv7a_          23 MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF   93 (417)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence            34455566765554 69999999999999999999999999999999999999998888777776665543