Psyllid ID: psy17635

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGFNEYSQPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTGTKN
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccc
Coil and Loop (DISEMBL)
MPSDTVATAGWFIGMLLAIAFLILVLILVCLIkrnrggkyavhereaahgrhdypeepgfneysqpldgkprtrssmssekhpvesdtdsmaeygdgdtgtkn
Flexible Loop (DISEMBL)
MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAhgrhdypeepgfneySQPLDGKPRTRSSMSsekhpvesdtdsmaeygdgdtgtkn
Low Complexity Region (SEG)
MPSDTVATAGWFIGMllaiaflilvlilvcliKRNRGGKYAVHEREAAHGRHDYPEEPGFNEYSQPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTGTKN
Disordered region (IsUnstruct)
*****VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAV*************************************************************
Disordered Region (DISOPRED)
******A**GWFIGMLLAIAFLILVLILVCLIKRNRG********************************************************YGDG***T**
Disordered Region (DISEMBL)
MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGFNEYSQ************************SMAEY*********
Disordered Region (DISPRO)
*PSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRG******************************************************************
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGFNEYSQPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTGTKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
P20241	1302	Neuroglian OS=Drosophila	yes	N/A	0.951	0.075	0.696	3e-27
O00533	1208	Neural cell adhesion mole	yes	N/A	0.902	0.076	0.456	5e-14
Q92823	1304	Neuronal cell adhesion mo	no	N/A	0.951	0.075	0.442	8e-13
P97686	1214	Neuronal cell adhesion mo	yes	N/A	0.951	0.080	0.442	8e-13
Q810U4	1256	Neuronal cell adhesion mo	no	N/A	0.951	0.078	0.442	8e-13
P70232	1209	Neural cell adhesion mole	no	N/A	0.932	0.079	0.433	3e-11
P35331	1284	Neuronal cell adhesion mo	no	N/A	0.951	0.076	0.425	4e-11
O94856	1347	Neurofascin OS=Homo sapie	no	N/A	0.912	0.069	0.446	3e-09
P97685	1240	Neurofascin OS=Rattus nor	no	N/A	0.912	0.075	0.446	3e-09
Q810U3	1240	Neurofascin OS=Mus muscul	no	N/A	0.912	0.075	0.446	4e-09

>sp|P20241|NRG_DROME Neuroglian OS=Drosophila melanogaster GN=Nrg PE=1 SV=2

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/99 (69%), Positives = 84/99 (84%), Gaps = 1/99 (1%)

Query: 3    SDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGFNE 62
            ++TVA AGWFIGM+LA+AF+I++ I++C+I+RNRGGKY VH+RE A+GR DYPEE GF+E
Sbjct: 1125 NETVANAGWFIGMMLALAFIIILFIIICIIRRNRGGKYDVHDRELANGRRDYPEEGGFHE 1184

Query: 63   YSQPLDGKPRTRSSMSSEKHP-VESDTDSMAEYGDGDTG 100
            YSQPLD K   R S+SS   P VESDTDSMAEYGDGDTG
Sbjct: 1185 YSQPLDNKSAGRQSVSSANKPGVESDTDSMAEYGDGDTG 1223

The long isoform may play a role in neural and glial cell adhesion in the developing embryo. The short isoform may be a more general cell adhesion molecule involved in other tissues and imaginal disk morphogenesis. Vital for embryonic development. Essential for septate junctions. Septate junctions, which are the equivalent of vertebrates tight junctions, are characterized by regular arrays of transverse structures that span the intermembrane space and form a physical barrier to diffusion. Required for the blood-brain barrier formation.
Drosophila melanogaster (taxid: 7227)

>sp|O00533|CHL1_HUMAN Neural cell adhesion molecule L1-like protein OS=Homo sapiens GN=CHL1 PE=1 SV=4

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 65/103 (63%), Gaps = 10/103 (9%)

Query: 4    DTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYP--EEPGFN 61
            D ++T GWFIG++ AIA L L+L+ VC +KRNRGGKY+V E+E  H   +    ++  F 
Sbjct: 1075 DDISTQGWFIGLMCAIALLTLLLLTVCFVKRNRGGKYSVKEKEDLHPDPEIQSVKDETFG 1134

Query: 62   EYS----QPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTG 100
            EYS    +PL G  R   S++ +  P ES  DS+ EYG+GD G
Sbjct: 1135 EYSDSDEKPLKGSLR---SLNRDMQPTES-ADSLVEYGEGDHG 1173

Extracellular matrix and cell adhesion protein that plays a role in nervous system development and in synaptic plasticity. Both soluble and membranous forms promote neurite outgrowth of cerebellar and hippocampal neurons and suppress neuronal cell death. Plays a role in neuronal positioning of pyramidal neurons and in regulation of both the number of interneurons and the efficacy of GABAergic synapses. May play a role in regulating cell migration in nerve regeneration and cortical development. Potentiates integrin-dependent cell migration towards extracellular matrix proteins. Recruits ANK3 to the plasma membrane.

Homo sapiens (taxid: 9606)

>sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule OS=Homo sapiens GN=NRCAM PE=1 SV=3

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 6/104 (5%)

Query: 6    VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDY---PEEPG-FN 61
            +AT GWFIG++ A+A LIL+L++VC I+RN+GGKY V E+E AH   +     E+ G F 
Sbjct: 1164 IATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFG 1223

Query: 62   EYSQPLDGKPRTRSSMSSEKHPV--ESDTDSMAEYGDGDTGTKN 103
            EYS   D KP  + S +     V  E   DS+ +YG+G  G  N
Sbjct: 1224 EYSDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFN 1267

Cell adhesion, ankyrin-binding protein involved in neuron-neuron adhesion. May play a role in the molecular assembly of the nodes of Ranvier.

Homo sapiens (taxid: 9606)

>sp|P97686|NRCAM_RAT Neuronal cell adhesion molecule OS=Rattus norvegicus GN=Nrcam PE=1 SV=2

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 6/104 (5%)

Query: 6    VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGR---HDYPEEPG-FN 61
            +AT GWFIG++ A+A LIL+L++VC I+RN+GGKY V E+E AH         E+ G F 
Sbjct: 1074 IATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFG 1133

Query: 62   EYSQPLDGKPRTRSSMSSEKHPV--ESDTDSMAEYGDGDTGTKN 103
            EYS   D KP  + S +     V  E   DS+ +YG+G  G  N
Sbjct: 1134 EYSDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFN 1177

Cell adhesion, ankyrin-binding protein involved in neuron-neuron adhesion. May play a role in the molecular assembly of the nodes of Ranvier.

Rattus norvegicus (taxid: 10116)

>sp|Q810U4|NRCAM_MOUSE Neuronal cell adhesion molecule OS=Mus musculus GN=Nrcam PE=1 SV=2

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 6/104 (5%)

Query: 6    VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDY---PEEPG-FN 61
            +AT GWFIG++ A+A LIL+L++VC I+RN+GGKY V E+E AH   +     E+ G F 
Sbjct: 1116 IATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFG 1175

Query: 62   EYSQPLDGKPRTRSSMSSEKHPV--ESDTDSMAEYGDGDTGTKN 103
            EYS   D KP  + S +     V  E   DS+ +YG+G  G  N
Sbjct: 1176 EYSDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFN 1219

Cell adhesion, ankyrin-binding protein involved in neuron-neuron adhesion. May play a role in the molecular assembly of the nodes of Ranvier.

Mus musculus (taxid: 10090)

>sp|P70232|CHL1_MOUSE Neural cell adhesion molecule L1-like protein OS=Mus musculus GN=Chl1 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 10/106 (9%)

Query: 4    DTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDY--PEEPGFN 61
            D ++T GWFIG++ AIA L L+L+ +C +KRNRGGKY+V E+E  H   +    ++  F 
Sbjct: 1076 DDISTQGWFIGLMCAIALLTLILLTICFVKRNRGGKYSVKEKEDLHPDPEVQSAKDETFG 1135

Query: 62   EYS----QPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTGTKN 103
            EYS    +PL G  R   S++    P ES  DS+ EYG+GD    N
Sbjct: 1136 EYSDSDEKPLKGSLR---SLNRNMQPTES-ADSLVEYGEGDQSIFN 1177

Extracellular matrix and cell adhesion protein that plays a role in nervous system development and in synaptic plasticity. Both soluble and membranous forms promote neurite outgrowth of cerebellar and hippocampal neurons and suppress neuronal cell death. Plays a role in neuronal positioning of pyramidal neurons as well as in regulation of both the number of interneurons and the efficacy of GABAergic synapses. May play a role in regulating cell migration in nerve regeneration and cortical development. Potentiates integrin-dependent cell migration towards extracellular matrix proteins. Recruits ANK3 to the plasma membrane.

Mus musculus (taxid: 10090)

>sp|P35331|NRCAM_CHICK Neuronal cell adhesion molecule OS=Gallus gallus PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 10/108 (9%)

Query: 6    VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDY---PEEPG-FN 61
            +AT GWFIG++ A+A LIL+L++VC I+RN+GGKY V E+E AH   +     E+ G F 
Sbjct: 1140 IATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFG 1199

Query: 62   EY----SQPLDGKPRTRSSMSSEKHPV--ESDTDSMAEYGDGDTGTKN 103
            EY    S   D KP  + S +     V  E   DS+ +YG+G  G  N
Sbjct: 1200 EYRSLESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFN 1247

This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc. Specifically involved in the development of optic fibres in the retina.

Gallus gallus (taxid: 9031)

>sp|O94856|NFASC_HUMAN Neurofascin OS=Homo sapiens GN=NFASC PE=1 SV=4

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 9/103 (8%)

Query: 6    VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHE-REAAHGRHDYPEEPGFNEYS 64
            +AT GWFIG++ AIA L+L+L++VC IKR+RGGKY V E ++   G  D  EE G  +YS
Sbjct: 1212 IATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYS 1271

Query: 65   ----QPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTGTKN 103
                +PL G   +++S+       ESD DS+ +YG+G  G  N
Sbjct: 1272 DEDNKPLQG---SQTSLDGTIKQQESD-DSLVDYGEGGEGQFN 1310

Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions.

Homo sapiens (taxid: 9606)

>sp|P97685|NFASC_RAT Neurofascin OS=Rattus norvegicus GN=Nfasc PE=1 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 9/103 (8%)

Query: 6    VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHE-REAAHGRHDYPEEPGFNEYS 64
            +AT GWFIG++ AIA L+L+L++VC IKR+RGGKY V E ++   G  D  EE G  +YS
Sbjct: 1105 IATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYS 1164

Query: 65   ----QPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTGTKN 103
                +PL G   +++S+       ESD DS+ +YG+G  G  N
Sbjct: 1165 DEDNKPLQG---SQTSLDGTIKQQESD-DSLVDYGEGGEGQFN 1203

Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions. Isoform 2/isoform 3 may be responsible for mediating and signaling axon-glial interaction during the early stages of myelination.

Rattus norvegicus (taxid: 10116)

>sp|Q810U3|NFASC_MOUSE Neurofascin OS=Mus musculus GN=Nfasc PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 9/103 (8%)

Query: 6    VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHE-REAAHGRHDYPEEPGFNEYS 64
            +AT GWFIG++ AIA L+L+L++VC IKR+RGGKY V E ++   G  D  EE G  +YS
Sbjct: 1105 IATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYS 1164

Query: 65   ----QPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTGTKN 103
                +PL G   +++S+       ESD DS+ +YG+G  G  N
Sbjct: 1165 DEDNKPLQG---SQTSLDGTIKQQESD-DSLVDYGEGGEGQFN 1203

Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
383863731	1251	PREDICTED: neuroglian-like [Megachile ro	0.961	0.079	0.716	2e-34
380025831	1251	PREDICTED: LOW QUALITY PROTEIN: neurogli	0.961	0.079	0.716	2e-34
328788305	1251	PREDICTED: neuroglian [Apis mellifera]	0.961	0.079	0.716	2e-34
340714433	1251	PREDICTED: LOW QUALITY PROTEIN: neurogli	0.961	0.079	0.716	3e-34
350399162	1251	PREDICTED: neuroglian-like isoform 1 [Bo	0.961	0.079	0.716	3e-34
350399166	1247	PREDICTED: neuroglian-like isoform 2 [Bo	0.951	0.078	0.714	1e-33
156546343	1254	PREDICTED: neuroglian-like isoform 1 [Na	0.932	0.076	0.708	5e-33
345498258	1248	PREDICTED: neuroglian-like isoform 2 [Na	0.922	0.076	0.705	2e-32
242019922	1253	Neuroglian precursor, putative [Pediculu	0.970	0.079	0.732	2e-30
347964368	1271	AGAP000720-PB [Anopheles gambiae str. PE	0.970	0.078	0.71	4e-29

>gi|383863731|ref|XP_003707333.1| PREDICTED: neuroglian-like [Megachile rotundata]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 87/106 (82%), Gaps = 7/106 (6%)

Query: 1    MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGF 60
             P + VATAGWFIGM+LAIAFL+LVLI+VC+IKRNRGGKYAVHERE A GR DYP+E GF
Sbjct: 1114 QPKENVATAGWFIGMMLAIAFLLLVLIIVCVIKRNRGGKYAVHERELAAGRGDYPDEGGF 1173

Query: 61   NEYSQPLDGKPR-TRSSMSSE-----KHPVESDTDSMAEYGDGDTG 100
            +EYSQPLD K    R+S++S      KHP ESDTDSMAEYG+GDTG
Sbjct: 1174 HEYSQPLDTKSAGGRASLASSSHQDGKHP-ESDTDSMAEYGEGDTG 1218

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025831|ref|XP_003696667.1| PREDICTED: LOW QUALITY PROTEIN: neuroglian-like [Apis florea]

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 87/106 (82%), Gaps = 7/106 (6%)

Query: 1    MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGF 60
             P + VATAGWFIGM+LAIAFL+LVLI+VC+IKRNRGGKYAVHERE A GR DYP+E GF
Sbjct: 1114 QPKENVATAGWFIGMMLAIAFLLLVLIIVCVIKRNRGGKYAVHERELAAGRGDYPDEGGF 1173

Query: 61   NEYSQPLDGKPR-TRSSMSSE-----KHPVESDTDSMAEYGDGDTG 100
            +EYSQPLD K    R+S++S      KHP ESDTDSMAEYG+GDTG
Sbjct: 1174 HEYSQPLDTKSAGGRASLASSSHQDGKHP-ESDTDSMAEYGEGDTG 1218

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788305|ref|XP_395296.3| PREDICTED: neuroglian [Apis mellifera]

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 87/106 (82%), Gaps = 7/106 (6%)

Query: 1    MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGF 60
             P + VATAGWFIGM+LAIAFL+LVLI+VC+IKRNRGGKYAVHERE A GR DYP+E GF
Sbjct: 1114 QPKENVATAGWFIGMMLAIAFLLLVLIIVCVIKRNRGGKYAVHERELAAGRGDYPDEGGF 1173

Query: 61   NEYSQPLDGKPR-TRSSMSSE-----KHPVESDTDSMAEYGDGDTG 100
            +EYSQPLD K    R+S++S      KHP ESDTDSMAEYG+GDTG
Sbjct: 1174 HEYSQPLDTKSAGGRASLASSSHQDGKHP-ESDTDSMAEYGEGDTG 1218

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714433|ref|XP_003395733.1| PREDICTED: LOW QUALITY PROTEIN: neuroglian-like [Bombus terrestris]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 87/106 (82%), Gaps = 7/106 (6%)

Query: 1    MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGF 60
             P + VATAGWFIGM+LAIAFL+LVLI+VC+IKRNRGGKYAVHERE A GR DYP+E GF
Sbjct: 1114 QPKENVATAGWFIGMMLAIAFLLLVLIIVCVIKRNRGGKYAVHERELAAGRGDYPDEGGF 1173

Query: 61   NEYSQPLDGKPR-TRSSMSSE-----KHPVESDTDSMAEYGDGDTG 100
            +EYSQPLD K    R+S++S      KHP ESDTDSMAEYG+GDTG
Sbjct: 1174 HEYSQPLDTKSAGGRASLASSSHQDGKHP-ESDTDSMAEYGEGDTG 1218

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399162|ref|XP_003485438.1| PREDICTED: neuroglian-like isoform 1 [Bombus impatiens]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 87/106 (82%), Gaps = 7/106 (6%)

Query: 1    MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGF 60
             P + VATAGWFIGM+LAIAFL+LVLI+VC+IKRNRGGKYAVHERE A GR DYP+E GF
Sbjct: 1114 QPKENVATAGWFIGMMLAIAFLLLVLIIVCVIKRNRGGKYAVHERELAAGRGDYPDEGGF 1173

Query: 61   NEYSQPLDGKPR-TRSSMSSE-----KHPVESDTDSMAEYGDGDTG 100
            +EYSQPLD K    R+S++S      KHP ESDTDSMAEYG+GDTG
Sbjct: 1174 HEYSQPLDTKSAGGRASLASSSHQDGKHP-ESDTDSMAEYGEGDTG 1218

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399166|ref|XP_003485439.1| PREDICTED: neuroglian-like isoform 2 [Bombus impatiens]

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 86/105 (81%), Gaps = 7/105 (6%)

Query: 1    MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGF 60
             P + VATAGWFIGM+LAIAFL+LVLI+VC+IKRNRGGKYAVHERE A GR DYP+E GF
Sbjct: 1114 QPKENVATAGWFIGMMLAIAFLLLVLIIVCVIKRNRGGKYAVHERELAAGRGDYPDEGGF 1173

Query: 61   NEYSQPLDGKPR-TRSSMSSE-----KHPVESDTDSMAEYGDGDT 99
            +EYSQPLD K    R+S++S      KHP ESDTDSMAEYG+GDT
Sbjct: 1174 HEYSQPLDTKSAGGRASLASSSHQDGKHP-ESDTDSMAEYGEGDT 1217

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546343|ref|XP_001606583.1| PREDICTED: neuroglian-like isoform 1 [Nasonia vitripennis]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 85/103 (82%), Gaps = 7/103 (6%)

Query: 4    DTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGFNEY 63
            + VATAGWFIGM+LAIAFL+ +LI+VC+IKRNRGGKYAVHERE A GR DYP+E GF+EY
Sbjct: 1118 ENVATAGWFIGMMLAIAFLLFILIIVCVIKRNRGGKYAVHERELAAGRGDYPDEGGFHEY 1177

Query: 64   SQPLDGKP-RTRSSMSSE-----KHPVESDTDSMAEYGDGDTG 100
            SQPLD K    R+S++S      KHP ESDTDSMAEYG+GDTG
Sbjct: 1178 SQPLDNKSGGGRASLASSSHHDGKHP-ESDTDSMAEYGEGDTG 1219

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498258|ref|XP_003428190.1| PREDICTED: neuroglian-like isoform 2 [Nasonia vitripennis]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 84/102 (82%), Gaps = 7/102 (6%)

Query: 4    DTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGFNEY 63
            + VATAGWFIGM+LAIAFL+ +LI+VC+IKRNRGGKYAVHERE A GR DYP+E GF+EY
Sbjct: 1118 ENVATAGWFIGMMLAIAFLLFILIIVCVIKRNRGGKYAVHERELAAGRGDYPDEGGFHEY 1177

Query: 64   SQPLDGKP-RTRSSMSSE-----KHPVESDTDSMAEYGDGDT 99
            SQPLD K    R+S++S      KHP ESDTDSMAEYG+GDT
Sbjct: 1178 SQPLDNKSGGGRASLASSSHHDGKHP-ESDTDSMAEYGEGDT 1218

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019922|ref|XP_002430407.1| Neuroglian precursor, putative [Pediculus humanus corporis] gi|212515537|gb|EEB17669.1| Neuroglian precursor, putative [Pediculus humanus corporis]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 87/101 (86%), Gaps = 1/101 (0%)

Query: 1    MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGF 60
             P + VATAGWFIGM+LAI FL+LVL++VC+IKRNRGGKY VHERE A+GRH+YPEE GF
Sbjct: 1117 QPKENVATAGWFIGMMLAITFLLLVLLIVCIIKRNRGGKYIVHEREHAYGRHNYPEEAGF 1176

Query: 61   NEYSQPLDGKPRTRSSMSSE-KHPVESDTDSMAEYGDGDTG 100
            +EYSQPLD K   R+S+SS+ K  VESDTDSMAEYG+GDTG
Sbjct: 1177 HEYSQPLDNKSHGRTSLSSDPKQVVESDTDSMAEYGEGDTG 1217

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347964368|ref|XP_003437079.1| AGAP000720-PB [Anopheles gambiae str. PEST] gi|333467499|gb|EGK96582.1| AGAP000720-PB [Anopheles gambiae str. PEST]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 86/100 (86%)

Query: 1    MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGF 60
            +P D +ATAGWFIGM+LAIAFLILVLI++C++KRNRGGKY VH+RE A+GR+DY EE GF
Sbjct: 1130 VPGDNIATAGWFIGMMLAIAFLILVLIIICIVKRNRGGKYDVHDRELANGRNDYTEEGGF 1189

Query: 61   NEYSQPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTG 100
             EYSQPLD K + R S++S+K   ESDTDSMAEYG+GDTG
Sbjct: 1190 PEYSQPLDNKSQGRQSLNSQKVGPESDTDSMAEYGEGDTG 1229

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
FB|FBgn0264975	1302	Nrg "Neuroglian" [Drosophila m	0.951	0.075	0.616	9.4e-26
UNIPROTKB|O00533	1208	CHL1 "Neural cell adhesion mol	0.922	0.078	0.386	2.4e-10
MGI|MGI:1098266	1209	Chl1 "cell adhesion molecule w	0.951	0.081	0.375	8.3e-10
UNIPROTKB|F1MW33	1200	CHL1 "Uncharacterized protein"	0.951	0.081	0.365	2.2e-09
UNIPROTKB|F1SFM3	1210	CHL1 "Uncharacterized protein"	0.951	0.080	0.365	2.8e-09
RGD|3209	1214	Nrcam "neuronal cell adhesion	0.951	0.080	0.365	2.8e-09
MGI|MGI:104750	1256	Nrcam "neuron-glia-CAM-related	0.951	0.078	0.365	3e-09
UNIPROTKB|Q92823	1304	NRCAM "Neuronal cell adhesion	0.951	0.075	0.365	3.1e-09
UNIPROTKB|E1BLM2	1308	E1BLM2 "Uncharacterized protei	0.951	0.074	0.365	3.1e-09
UNIPROTKB|H7C0L6	298	NFASC "Neurofascin" [Homo sapi	0.932	0.322	0.366	3.5e-09

FB|FBgn0264975 Nrg "Neuroglian" [Drosophila melanogaster (taxid:7227)]

 Score = 305 (112.4 bits), Expect = 9.4e-26, P = 9.4e-26
 Identities = 61/99 (61%), Positives = 68/99 (68%)

Query:     3 SDTVATAGWFIGMXXXXXXXXXXXXXXXXXKRNRGGKYAVHEREAAHGRHDYPEEPGFNE 62
             ++TVA AGWFIGM                 +RNRGGKY VH+RE A+GR DYPEE GF+E
Sbjct:  1125 NETVANAGWFIGMMLALAFIIILFIIICIIRRNRGGKYDVHDRELANGRRDYPEEGGFHE 1184

Query:    63 YSQPLDGKPRTRSSMSSEKHP-VESDTDSMAEYGDGDTG 100
             YSQPLD K   R S+SS   P VESDTDSMAEYGDGDTG
Sbjct:  1185 YSQPLDNKSAGRQSVSSANKPGVESDTDSMAEYGDGDTG 1223

GO:0005886 "plasma membrane" evidence=NAS;IDA

GO:0007560 "imaginal disc morphogenesis" evidence=IMP

GO:0007158 "neuron cell-cell adhesion" evidence=ISS;NAS;IMP

GO:0005509 "calcium ion binding" evidence=IDA

GO:0016319 "mushroom body development" evidence=NAS;IMP

GO:0008050 "female courtship behavior" evidence=IMP;TAS

GO:0048036 "central complex development" evidence=IMP;NAS

GO:0045924 "regulation of female receptivity" evidence=IMP;NAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0016328 "lateral plasma membrane" evidence=TAS

GO:0005918 "septate junction" evidence=IDA

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0005919 "pleated septate junction" evidence=IDA

GO:0060857 "establishment of glial blood-brain barrier" evidence=IMP

GO:0050808 "synapse organization" evidence=IMP

GO:0008049 "male courtship behavior" evidence=IMP

GO:0021682 "nerve maturation" evidence=IMP

GO:0008366 "axon ensheathment" evidence=IMP

GO:0048675 "axon extension" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

GO:0030175 "filopodium" evidence=IDA

UNIPROTKB|O00533 CHL1 "Neural cell adhesion molecule L1-like protein" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 39/101 (38%), Positives = 52/101 (51%)

Query:     4 DTVATAGWFIGMXXXXXXXXXXXXXXXXXKRNRGGKYAVHEREAAHGRHDYP--EEPGFN 61
             D ++T GWFIG+                 KRNRGGKY+V E+E  H   +    ++  F 
Sbjct:  1075 DDISTQGWFIGLMCAIALLTLLLLTVCFVKRNRGGKYSVKEKEDLHPDPEIQSVKDETFG 1134

Query:    62 EYSQPLDGKPRTRS--SMSSEKHPVESDTDSMAEYGDGDTG 100
             EYS   D KP   S  S++ +  P ES  DS+ EYG+GD G
Sbjct:  1135 EYSDS-DEKPLKGSLRSLNRDMQPTES-ADSLVEYGEGDHG 1173

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0050890 "cognition" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

MGI|MGI:1098266 Chl1 "cell adhesion molecule with homology to L1CAM" [Mus musculus (taxid:10090)]

 Score = 155 (59.6 bits), Expect = 8.3e-10, P = 8.3e-10
 Identities = 39/104 (37%), Positives = 51/104 (49%)

Query:     4 DTVATAGWFIGMXXXXXXXXXXXXXXXXXKRNRGGKYAVHEREAAHGRHDYP--EEPGFN 61
             D ++T GWFIG+                 KRNRGGKY+V E+E  H   +    ++  F 
Sbjct:  1076 DDISTQGWFIGLMCAIALLTLILLTICFVKRNRGGKYSVKEKEDLHPDPEVQSAKDETFG 1135

Query:    62 EYSQPLDGKPRTRS--SMSSEKHPVESDTDSMAEYGDGDTGTKN 103
             EYS   D KP   S  S++    P ES  DS+ EYG+GD    N
Sbjct:  1136 EYSDS-DEKPLKGSLRSLNRNMQPTES-ADSLVEYGEGDQSIFN 1177

GO:0001764 "neuron migration" evidence=IMP

GO:0002020 "protease binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007411 "axon guidance" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030425 "dendrite" evidence=IDA

GO:0031175 "neuron projection development" evidence=IDA

GO:0035640 "exploration behavior" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0050890 "cognition" evidence=IMP

UNIPROTKB|F1MW33 CHL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 151 (58.2 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 38/104 (36%), Positives = 52/104 (50%)

Query:     4 DTVATAGWFIGMXXXXXXXXXXXXXXXXXKRNRGGKYAVHEREAAHGRHDYP--EEPGFN 61
             D ++T GWFIG+                 KRN+GGKY+V E+E  H   +    ++  F 
Sbjct:  1067 DDISTQGWFIGLMCAIALLTLILLTVCFVKRNKGGKYSVKEKEDLHPDPEVQSAKDETFG 1126

Query:    62 EYSQPLDGKPRTRS--SMSSEKHPVESDTDSMAEYGDGDTGTKN 103
             EYS   D KP   S  S++ +    ES  DS+ EYG+GD G  N
Sbjct:  1127 EYSDS-DEKPLKGSLRSLNRDMQATES-ADSLVEYGEGDHGLFN 1168

GO:0050890 "cognition" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

UNIPROTKB|F1SFM3 CHL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 150 (57.9 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 38/104 (36%), Positives = 52/104 (50%)

Query:     4 DTVATAGWFIGMXXXXXXXXXXXXXXXXXKRNRGGKYAVHEREAAHGRHDYP--EEPGFN 61
             D ++T GWFIG+                 KRN+GGKY+V E+E  H   +    ++  F 
Sbjct:  1077 DDISTQGWFIGLMCAIALLTLILLTVCFVKRNKGGKYSVKEKEDLHPDPEVQSVKDETFG 1136

Query:    62 EYSQPLDGKPRTRS--SMSSEKHPVESDTDSMAEYGDGDTGTKN 103
             EYS   D KP   S  S++ +    ES  DS+ EYG+GD G  N
Sbjct:  1137 EYSDS-DEKPLKGSLRSLNRDMQVTES-ADSLVEYGEGDHGLFN 1178

GO:0050890 "cognition" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

RGD|3209 Nrcam "neuronal cell adhesion molecule" [Rattus norvegicus (taxid:10116)]

 Score = 150 (57.9 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 38/104 (36%), Positives = 50/104 (48%)

Query:     6 VATAGWFIGMXXXXXXXXXXXXXXXXXKRNRGGKYAVHEREAAHGRHDY-P--EEPG-FN 61
             +AT GWFIG+                 +RN+GGKY V E+E AH   +  P  E+ G F 
Sbjct:  1074 IATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFG 1133

Query:    62 EYSQPLDGKPRTRSSMSSEKHPV--ESDTDSMAEYGDGDTGTKN 103
             EYS   D KP  + S +     V  E   DS+ +YG+G  G  N
Sbjct:  1134 EYSDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFN 1177

GO:0001525 "angiogenesis" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO;TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0007411 "axon guidance" evidence=ISO

GO:0007417 "central nervous system development" evidence=ISO

GO:0008104 "protein localization" evidence=ISO

GO:0010975 "regulation of neuron projection development" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=ISO

GO:0019227 "neuronal action potential propagation" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0030506 "ankyrin binding" evidence=ISO;ISS;TAS

GO:0031290 "retinal ganglion cell axon guidance" evidence=ISO

GO:0043194 "axon initial segment" evidence=IDA

GO:0045162 "clustering of voltage-gated sodium channels" evidence=ISO;ISS

GO:0045202 "synapse" evidence=ISO

GO:0086080 "protein binding involved in heterotypic cell-cell adhesion" evidence=ISO

MGI|MGI:104750 Nrcam "neuron-glia-CAM-related cell adhesion molecule" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 38/104 (36%), Positives = 50/104 (48%)

Query:     6 VATAGWFIGMXXXXXXXXXXXXXXXXXKRNRGGKYAVHEREAAHGRHDY-P--EEPG-FN 61
             +AT GWFIG+                 +RN+GGKY V E+E AH   +  P  E+ G F 
Sbjct:  1116 IATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFG 1175

Query:    62 EYSQPLDGKPRTRSSMSSEKHPV--ESDTDSMAEYGDGDTGTKN 103
             EYS   D KP  + S +     V  E   DS+ +YG+G  G  N
Sbjct:  1176 EYSDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFN 1219

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007411 "axon guidance" evidence=IDA

GO:0007417 "central nervous system development" evidence=IDA

GO:0008104 "protein localization" evidence=IDA

GO:0010975 "regulation of neuron projection development" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IDA

GO:0019227 "neuronal action potential propagation" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0030506 "ankyrin binding" evidence=ISO

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0043194 "axon initial segment" evidence=ISO

GO:0045162 "clustering of voltage-gated sodium channels" evidence=ISO;IMP

GO:0045202 "synapse" evidence=IDA

GO:0086080 "protein binding involved in heterotypic cell-cell adhesion" evidence=IGI

UNIPROTKB|Q92823 NRCAM "Neuronal cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 38/104 (36%), Positives = 50/104 (48%)

Query:     6 VATAGWFIGMXXXXXXXXXXXXXXXXXKRNRGGKYAVHEREAAHGRHDY-P--EEPG-FN 61
             +AT GWFIG+                 +RN+GGKY V E+E AH   +  P  E+ G F 
Sbjct:  1164 IATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFG 1223

Query:    62 EYSQPLDGKPRTRSSMSSEKHPV--ESDTDSMAEYGDGDTGTKN 103
             EYS   D KP  + S +     V  E   DS+ +YG+G  G  N
Sbjct:  1224 EYSDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFN 1267

GO:0008104 "protein localization" evidence=IEA

GO:0019227 "neuronal action potential propagation" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=NAS

GO:0007413 "axonal fasciculation" evidence=NAS

GO:0045162 "clustering of voltage-gated sodium channels" evidence=IDA

GO:0007416 "synapse assembly" evidence=TAS

GO:0007409 "axonogenesis" evidence=NAS

GO:0045666 "positive regulation of neuron differentiation" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0030516 "regulation of axon extension" evidence=NAS

GO:0016337 "cell-cell adhesion" evidence=NAS

GO:0030506 "ankyrin binding" evidence=IDA

GO:0007417 "central nervous system development" evidence=NAS

GO:0001764 "neuron migration" evidence=NAS

GO:0043005 "neuron projection" evidence=NAS

GO:0001525 "angiogenesis" evidence=IEP

GO:0005886 "plasma membrane" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0043194 "axon initial segment" evidence=ISS

UNIPROTKB|E1BLM2 E1BLM2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 150 (57.9 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 38/104 (36%), Positives = 50/104 (48%)

Query:     6 VATAGWFIGMXXXXXXXXXXXXXXXXXKRNRGGKYAVHEREAAHGRHDY-P--EEPG-FN 61
             +AT GWFIG+                 +RN+GGKY V E+E AH   +  P  E+ G F 
Sbjct:  1168 IATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFG 1227

Query:    62 EYSQPLDGKPRTRSSMSSEKHPV--ESDTDSMAEYGDGDTGTKN 103
             EYS   D KP  + S +     V  E   DS+ +YG+G  G  N
Sbjct:  1228 EYSDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFN 1271

GO:0045202 "synapse" evidence=IEA

GO:0045162 "clustering of voltage-gated sodium channels" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0030506 "ankyrin binding" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0019227 "neuronal action potential propagation" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0010975 "regulation of neuron projection development" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

UNIPROTKB|H7C0L6 NFASC "Neurofascin" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 37/101 (36%), Positives = 50/101 (49%)

Query:     6 VATAGWFIGMXXXXXXXXXXXXXXXXXKRNRGGKYAVHER-EAAHGRHDYPEEPGFNEYS 64
             +AT GWFIG+                 KR+RGGKY V E+ +   G  D  EE G  +YS
Sbjct:   163 IATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYS 222

Query:    65 QPLDGKPR--TRSSMSSEKHPVESDTDSMAEYGDGDTGTKN 103
                D KP   +++S+       ESD DS+ +YG+G  G  N
Sbjct:   223 DE-DNKPLQGSQTSLDGTIKQQESD-DSLVDYGEGGEGQFN 261

GO:0007411 "axon guidance" evidence=IEA

GO:0007422 "peripheral nervous system development" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P20241	NRG_DROME	No assigned EC number	0.6969	0.9514	0.0752	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	103
pfam13882	118	pfam13882, Bravo_FIGEY, C-terminal domain of Fibro	2e-40
pfam13273	96	pfam13273, DUF4064, Protein of unknown function (D	0.002

>gnl|CDD|222432 pfam13882, Bravo_FIGEY, C-terminal domain of Fibronectin type III

 Score =  129 bits (326), Expect = 2e-40
 Identities = 52/99 (52%), Positives = 68/99 (68%), Gaps = 4/99 (4%)

Query: 6   VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDY--PEEPGFNEY 63
            AT GWFIG++ AIA L+L+L++VC IKRN+GGKY+V E+E A G  +    ++ GF EY
Sbjct: 2   FATQGWFIGLMCAIALLLLILLIVCFIKRNKGGKYSVKEKEDAPGDPEDQPMKDEGFGEY 61

Query: 64  SQPLDGKPRTRSSMSSEKHPV--ESDTDSMAEYGDGDTG 100
           S+P D KP  R S  S    +  +S TDS+ EYGDGDTG
Sbjct: 62  SRPEDNKPLPRGSQQSLDGEIGDDSSTDSLDEYGDGDTG 100

This is the very C-terminal region of neural adhesion molecule L1 proteins that are also known as Bravo or NrCAM. It lies upstream of the IG and Fn3 domains and has the highly conserved motif FIGEY. The function is not known. Length = 118

>gnl|CDD|222017 pfam13273, DUF4064, Protein of unknown function (DUF4064)

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 4  DTVATAGWFIGMLLAIAFLILVLILVCLIKRNR 36
          D ++T G  +G+  AI   IL +I   L+K+  
Sbjct: 48 DALSTLGTGLGIG-AIILSILGIIGSILVKKKP 79

Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PF13882	90	Bravo_FIGEY: Bravo-like intracellular region	99.92
KOG3513|consensus	1051		98.91
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	96.61
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	96.24
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	95.25
PF07204	98	Orthoreo_P10: Orthoreovirus membrane fusion protei	94.2
PF15102	146	TMEM154: TMEM154 protein family	94.15
PF12877	684	DUF3827: Domain of unknown function (DUF3827); Int	94.09
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	93.73
PF05393	94	Hum_adeno_E3A: Human adenovirus early E3A glycopro	92.98
PF05568	189	ASFV_J13L: African swine fever virus J13L protein;	92.9
PF14979	154	TMEM52: Transmembrane 52	92.2
PHA03164	88	hypothetical protein; Provisional	91.83
PF14575	75	EphA2_TM: Ephrin type-A receptor 2 transmembrane d	91.63
PF15330	107	SIT: SHP2-interacting transmembrane adaptor protei	90.98
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	89.71
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	88.99
PF15050	133	SCIMP: SCIMP protein	88.96
PF06024	101	DUF912: Nucleopolyhedrovirus protein of unknown fu	88.58
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	86.84
PF08173	28	YbgT_YccB: Membrane bound YbgT-like protein; Inter	86.67
PHA02867	167	C-type lectin protein; Provisional	86.48
KOG3956|consensus	359		85.88
PF10577	807	UPF0560: Uncharacterised protein family UPF0560; I	85.09
PHA02650	81	hypothetical protein; Provisional	84.37
TIGR02106	30	cyd_oper_ybgT cyd operon protein YbgT. This model	84.11
PF12297	429	EVC2_like: Ellis van Creveld protein 2 like protei	84.04
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	83.41
TIGR01167	34	LPXTG_anchor LPXTG-motif cell wall anchor domain.	83.06
PHA02947	215	S-S bond formation pathway protein; Provisional	83.01
COG4818	105	Predicted membrane protein [Function unknown]	82.6
PHA02844	75	putative transmembrane protein; Provisional	82.52
PF10717	85	ODV-E18: Occlusion-derived virus envelope protein	82.33
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	82.28
PF05545	49	FixQ: Cbb3-type cytochrome oxidase component FixQ;	81.72
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	80.71

>PF13882 Bravo_FIGEY: Bravo-like intracellular region

Probab=99.92  E-value=4.2e-26  Score=156.29  Aligned_cols=70  Identities=46%  Similarity=0.717  Sum_probs=60.6

Q ss_pred             eecCCCcccchhhhhhcCCC---CCCCCCCCcccCCCCCCC-CC-CCCCCCCCCCCCCCCcchhhhhCCCCCCCCC
Q psy17635         33 KRNRGGKYAVHEREAAHGRH---DYPEEPGFNEYSQPLDGK-PR-TRSSMSSEKHPVESDTDSMAEYGDGDTGTKN  103 (103)
Q Consensus        33 ~R~rGgKY~VkeKE~~~g~~---~~~dd~~F~EYsd~dek~-~~-~s~~~~~~~~~~~~s~DSl~dYgd~~~~~Fn  103 (103)
                      ||||||||+|++||++|+++   ||+| ++|+||+++++++ ++ +|++++++..+.++|+|||++||+++++|||
T Consensus         1 kR~kGGKY~V~eKE~~~~~~~~~~~kd-~~f~ey~~~e~~~~~~~~s~~s~~~~~~~~~s~DSL~~YGd~~~~~FN   75 (90)
T PF13882_consen    1 KRNKGGKYSVKEKEDAHGDPEDQPMKD-ETFGEYSDPEDPKPLKRGSSQSLDGSRKKSSSDDSLDDYGDGDTGQFN   75 (90)
T ss_pred             CCCCCCCCCCccccccCCCCccccccC-CCcccccCcccccccccccccccccCcCcCcCccCHhHhccCCCcccc
Confidence            69999999999999999998   4566 7999999875544 43 4667777888899999999999999999998

>KOG3513|consensus

Probab=98.91  E-value=3.5e-11  Score=109.23  Aligned_cols=99  Identities=25%  Similarity=0.254  Sum_probs=84.8

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHhheeecCCCcccchhhhhhcCCC----CCCCCCCCcccCCC-CCCCCC--CCCCC
Q psy17635          5 TVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRH----DYPEEPGFNEYSQP-LDGKPR--TRSSM   77 (103)
Q Consensus         5 ~~at~gWfIg~~~ai~lLllilli~C~i~R~rGgKY~VkeKE~~~g~~----~~~dd~~F~EYsd~-dek~~~--~s~~~   77 (103)
                      .++..+|||+.++++.++|+..++.|+.+|+++++|.|+.+|+.|.+.    .|+.+.+|.+|++. ++...+  +.+..
T Consensus       922 ~~~p~g~~~~~~~~~~~~l~w~~v~~~~nes~v~gYkV~~~~~~~~~~~~~~t~~~~~~~~~p~~~~~~y~i~v~~~~~g 1001 (1051)
T KOG3513|consen  922 DIAPPGNFIWKFSASILLLLWLLVSAFENESEVGGYKVLYREDLQNDIEIILTMKLDAEFPEPSDLDGKYDIKVRGYSPG 1001 (1051)
T ss_pred             ccCCCcceEEeeeeeEEEEEEeeEEEEeecccCcceEEEEeecccCCceeEecccccccccCccccCCcceeEeccccCC
Confidence            457899999999999999999999999999999999999999999887    45677899999875 333333  44556


Q ss_pred             CCCCCCCCCCcchhhhhCCCCCCCCC
Q psy17635         78 SSEKHPVESDTDSMAEYGDGDTGTKN  103 (103)
Q Consensus        78 ~~~~~~~~~s~DSl~dYgd~~~~~Fn  103 (103)
                      +.++++++.+.|||++||..++++|+
T Consensus      1002 gdg~~s~~~~~~s~~~~~~~~~~~~~ 1027 (1051)
T KOG3513|consen 1002 GDGTISEEISIDSLGSYGTMDAGTFS 1027 (1051)
T ss_pred             CCCCcCCccccccccCcCCCCCcccc
Confidence            66888889999999999999999986

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=96.61  E-value=0.0008  Score=47.53  Aligned_cols=24  Identities=21%  Similarity=0.736  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhheee
Q psy17635         11 WFIGMLLAIAFLILVLILVCLIKR   34 (103)
Q Consensus        11 WfIg~~~ai~lLllilli~C~i~R   34 (103)
                      |.+.+++++++||+|++++|+-+|
T Consensus         2 W~l~~iii~~i~l~~~~~~~~~rR   25 (130)
T PF12273_consen    2 WVLFAIIIVAILLFLFLFYCHNRR   25 (130)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHH
Confidence            877777777777777777676543

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=96.24  E-value=0.0011  Score=53.61  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=0.0

Q ss_pred             hhhHHHHH----HHHHHHHHHHHHHHhheeecCCCcccc
Q psy17635          8 TAGWFIGM----LLAIAFLILVLILVCLIKRNRGGKYAV   42 (103)
Q Consensus         8 t~gWfIg~----~~ai~lLllilli~C~i~R~rGgKY~V   42 (103)
                      ...|+.-+    ++|++|||+.++++||.+|+|.||-.+
T Consensus       142 ~d~yL~T~IpaVVI~~iLLIA~iIa~icyrrkR~GK~~~  180 (290)
T PF05454_consen  142 SDDYLHTFIPAVVIAAILLIAGIIACICYRRKRKGKMSL  180 (290)
T ss_dssp             ---------------------------------------
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence            33455443    333344444455567779999999887

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=95.25  E-value=0.02  Score=45.40  Aligned_cols=27  Identities=33%  Similarity=0.491  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHhheeecCCCc
Q psy17635         13 IGMLLAIAFLILVLILVCLIKRNRGGK   39 (103)
Q Consensus        13 Ig~~~ai~lLllilli~C~i~R~rGgK   39 (103)
                      |+|-+||+.|+||+||+++|.|+|--.
T Consensus       275 IaVG~~La~lvlivLiaYli~Rrr~~~  301 (306)
T PF01299_consen  275 IAVGAALAGLVLIVLIAYLIGRRRSRA  301 (306)
T ss_pred             HHHHHHHHHHHHHHHHhheeEeccccc
Confidence            566677888889999999997666443

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences

Probab=94.20  E-value=0.027  Score=39.49  Aligned_cols=43  Identities=12%  Similarity=0.270  Sum_probs=24.6

Q ss_pred             chhhhhHHHHHHHH-HHHHHHH-HHHHhheeecC-CCcccchhhhh
Q psy17635          5 TVATAGWFIGMLLA-IAFLILV-LILVCLIKRNR-GGKYAVHEREA   47 (103)
Q Consensus         5 ~~at~gWfIg~~~a-i~lLlli-lli~C~i~R~r-GgKY~VkeKE~   47 (103)
                      ++-++.|++....+ ++|+||| +|+.||..|.| -.+=.|-+||.
T Consensus        36 S~~~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K~~~~r~~~~reL   81 (98)
T PF07204_consen   36 SSFVAYWPYLAAGGGLILILIIIALVCCCRAKHKTSAARNTFHREL   81 (98)
T ss_pred             ehHHhhhHHhhccchhhhHHHHHHHHHHhhhhhhhHhhhhHHHHHH
Confidence            35567898876655 4444433 44445444444 55666777774

p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].

>PF15102 TMEM154: TMEM154 protein family

Probab=94.15  E-value=0.025  Score=42.07  Aligned_cols=15  Identities=33%  Similarity=0.848  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHhhee
Q psy17635         19 IAFLILVLILVCLIK   33 (103)
Q Consensus        19 i~lLllilli~C~i~   33 (103)
                      |+|+||+|+++|+|.
T Consensus        66 VLLvlLLl~vV~lv~   80 (146)
T PF15102_consen   66 VLLVLLLLSVVCLVI   80 (146)
T ss_pred             HHHHHHHHHHHHhee
Confidence            455556666677773

>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]

Probab=94.09  E-value=0.023  Score=50.80  Aligned_cols=32  Identities=22%  Similarity=0.581  Sum_probs=19.6

Q ss_pred             hhhhhHH-HHHHHHHHHHHHHHHHH--hheeecCC
Q psy17635          6 VATAGWF-IGMLLAIAFLILVLILV--CLIKRNRG   37 (103)
Q Consensus         6 ~at~gWf-Ig~~~ai~lLllilli~--C~i~R~rG   37 (103)
                      -.+..|+ ||++..|++++||++|+  |||+++|.
T Consensus       265 ~~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~  299 (684)
T PF12877_consen  265 PPNNLWIIAGVLVPVLVVLLIIIILYWKLCRKNKL  299 (684)
T ss_pred             CCCCeEEEehHhHHHHHHHHHHHHHHHHHhccccc
Confidence            3456788 67766666666665554  55555554

In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=93.73  E-value=0.047  Score=39.33  Aligned_cols=28  Identities=25%  Similarity=0.487  Sum_probs=15.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhheeecC
Q psy17635          7 ATAGWFIGMLLAIAFLILVLILVCLIKRNR   36 (103)
Q Consensus         7 at~gWfIg~~~ai~lLllilli~C~i~R~r   36 (103)
                      +..+=++|+|++|+++  ||||.+||+|.|
T Consensus        65 ~i~~Ii~gv~aGvIg~--Illi~y~irR~~   92 (122)
T PF01102_consen   65 AIIGIIFGVMAGVIGI--ILLISYCIRRLR   92 (122)
T ss_dssp             CHHHHHHHHHHHHHHH--HHHHHHHHHHHS
T ss_pred             ceeehhHHHHHHHHHH--HHHHHHHHHHHh
Confidence            3445556777776553  345555555543

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2

Probab=92.98  E-value=0.082  Score=36.81  Aligned_cols=24  Identities=33%  Similarity=0.602  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHhheeecC
Q psy17635         13 IGMLLAIAFLILVLILVCLIKRNR   36 (103)
Q Consensus        13 Ig~~~ai~lLllilli~C~i~R~r   36 (103)
                      +.++|.|-++++|+..+||.+|.|
T Consensus        37 ~lvI~~iFil~VilwfvCC~kRkr   60 (94)
T PF05393_consen   37 FLVICGIFILLVILWFVCCKKRKR   60 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Confidence            456677767777778888887644

; GO: 0016021 integral to membrane

>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ]

Probab=92.90  E-value=0.34  Score=36.96  Aligned_cols=56  Identities=14%  Similarity=0.256  Sum_probs=32.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhheeecCCCcccchhhhhhcCCCCCCCCCCCccc
Q psy17635          6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGFNEY   63 (103)
Q Consensus         6 ~at~gWfIg~~~ai~lLllilli~C~i~R~rGgKY~VkeKE~~~g~~~~~dd~~F~EY   63 (103)
                      |++.-.+|.+-++|..+++++||.+|..|.|-.- +--++|+.|-..|..|. ..+|-
T Consensus        27 fsthm~tILiaIvVliiiiivli~lcssRKkKaa-AAi~eediQfinpyqDq-qw~~v   82 (189)
T PF05568_consen   27 FSTHMYTILIAIVVLIIIIIVLIYLCSSRKKKAA-AAIEEEDIQFINPYQDQ-QWAGV   82 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-hhhhhhcccccCcccch-hhccC
Confidence            4444445544444445556677777776655433 45567788877776653 33343

>PF14979 TMEM52: Transmembrane 52

Probab=92.20  E-value=0.17  Score=38.11  Aligned_cols=22  Identities=36%  Similarity=0.673  Sum_probs=16.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHH
Q psy17635          7 ATAGWFIGMLLAIAFLILVLIL   28 (103)
Q Consensus         7 at~gWfIg~~~ai~lLllilli   28 (103)
                      -+..|.|++++.+++|+|+.=+
T Consensus        16 W~~LWyIwLill~~~llLLCG~   37 (154)
T PF14979_consen   16 WSSLWYIWLILLIGFLLLLCGL   37 (154)
T ss_pred             eehhhHHHHHHHHHHHHHHHHH
Confidence            3467999999888777776433

>PHA03164 hypothetical protein; Provisional

Probab=91.83  E-value=0.24  Score=33.90  Aligned_cols=28  Identities=29%  Similarity=0.609  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhheeecCCCc
Q psy17635         12 FIGMLLAIAFLILVLILVCLIKRNRGGK   39 (103)
Q Consensus        12 fIg~~~ai~lLllilli~C~i~R~rGgK   39 (103)
                      +|..-.||+.+|+|++++.+...||||+
T Consensus        61 lvLtgLaIamILfiifvlyvFnVnr~~~   88 (88)
T PHA03164         61 LVLTGLAIAMILFIIFVLYVFNVNRGGT   88 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeccCCC
Confidence            4444556888888888888888888885

>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A

Probab=91.63  E-value=0.26  Score=32.41  Aligned_cols=25  Identities=20%  Similarity=0.490  Sum_probs=10.2

Q ss_pred             HHHHHHHH-HHHHHHHHHHHhheeec
Q psy17635         11 WFIGMLLA-IAFLILVLILVCLIKRN   35 (103)
Q Consensus        11 WfIg~~~a-i~lLllilli~C~i~R~   35 (103)
                      |+|+.+++ ++++|++++++.+++|+
T Consensus         1 ~ii~~~~~g~~~ll~~v~~~~~~~rr   26 (75)
T PF14575_consen    1 LIIASIIVGVLLLLVLVIIVIVCFRR   26 (75)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred             CEEehHHHHHHHHHHhheeEEEEEee
Confidence            45554444 44444344333334443

...

>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT

Probab=90.98  E-value=0.15  Score=35.89  Aligned_cols=30  Identities=27%  Similarity=0.611  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHH-HHHHHHhhee---ecCCCcc
Q psy17635         11 WFIGMLLAIAFLI-LVLILVCLIK---RNRGGKY   40 (103)
Q Consensus        11 WfIg~~~ai~lLl-lilli~C~i~---R~rGgKY   40 (103)
                      |.|-.+++++||| +++-|+|+..   |.|++.|
T Consensus         1 w~Ll~il~llLll~l~asl~~wr~~~rq~k~~~~   34 (107)
T PF15330_consen    1 WLLLGILALLLLLSLAASLLAWRMKQRQKKAGQY   34 (107)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence            6666666665544 4455556553   3445555

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=89.71  E-value=0.12  Score=36.47  Aligned_cols=20  Identities=20%  Similarity=0.188  Sum_probs=14.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q psy17635         10 GWFIGMLLAIAFLILVLILV   29 (103)
Q Consensus        10 gWfIg~~~ai~lLllilli~   29 (103)
                      .|+|.|+++|++|++++++-
T Consensus         4 l~~iii~~i~l~~~~~~~~~   23 (130)
T PF12273_consen    4 LFAIIIVAILLFLFLFYCHN   23 (130)
T ss_pred             eHHHHHHHHHHHHHHHHHHH
Confidence            46777777777777777664

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=88.99  E-value=0.11  Score=33.94  Aligned_cols=14  Identities=21%  Similarity=0.605  Sum_probs=3.0

Q ss_pred             eecCCCcccchhhh
Q psy17635         33 KRNRGGKYAVHERE   46 (103)
Q Consensus        33 ~R~rGgKY~VkeKE   46 (103)
                      |+.--|.|.|.|..
T Consensus        37 rkkdEGSY~l~e~K   50 (64)
T PF01034_consen   37 RKKDEGSYDLDEPK   50 (64)
T ss_dssp             S------SS--S--
T ss_pred             HhcCCCCccCCCCC
Confidence            44446789888765

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF15050 SCIMP: SCIMP protein

Probab=88.96  E-value=0.38  Score=35.33  Aligned_cols=35  Identities=17%  Similarity=0.470  Sum_probs=20.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH-hhee--ecCCCcccc
Q psy17635          8 TAGWFIGMLLAIAFLILVLILV-CLIK--RNRGGKYAV   42 (103)
Q Consensus         8 t~gWfIg~~~ai~lLllilli~-C~i~--R~rGgKY~V   42 (103)
                      ...|+|..+.+|++-+.+-||+ |+|+  +++|.|..+
T Consensus         6 ~nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkwei   43 (133)
T PF15050_consen    6 DNFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEI   43 (133)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccee
Confidence            4568876665554444444444 5444  377888864

>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins

Probab=88.58  E-value=0.48  Score=32.54  Aligned_cols=28  Identities=14%  Similarity=0.199  Sum_probs=12.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHH-hheeecCC
Q psy17635          9 AGWFIGMLLAIAFLILVLILV-CLIKRNRG   37 (103)
Q Consensus         9 ~gWfIg~~~ai~lLllilli~-C~i~R~rG   37 (103)
                      .-|++.+ +.+++++|+.+|. .+|.|.|.
T Consensus        63 iili~ll-s~v~IlVily~IyYFVILRer~   91 (101)
T PF06024_consen   63 IILISLL-SFVCILVILYAIYYFVILRERQ   91 (101)
T ss_pred             chHHHHH-HHHHHHHHHhhheEEEEEeccc
Confidence            3444333 3333444444444 44456544

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=86.84  E-value=1.2  Score=26.42  Aligned_cols=25  Identities=20%  Similarity=0.677  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHH-HhheeecC
Q psy17635         12 FIGMLLAIAFLILVLIL-VCLIKRNR   36 (103)
Q Consensus        12 fIg~~~ai~lLllilli-~C~i~R~r   36 (103)
                      +.|++..+++++|..++ +|+.||.+
T Consensus         9 Iv~V~vg~~iiii~~~~YaCcykk~~   34 (38)
T PF02439_consen    9 IVAVVVGMAIIIICMFYYACCYKKHR   34 (38)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            33444444443333222 35556554

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long

Probab=86.67  E-value=1.1  Score=24.99  Aligned_cols=19  Identities=47%  Similarity=0.803  Sum_probs=15.9

Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q psy17635          9 AGWFIGMLLAIAFLILVLI   27 (103)
Q Consensus         9 ~gWfIg~~~ai~lLllill   27 (103)
                      ..|++|+..|+++-++.++
T Consensus         4 faWilG~~lA~~~~i~~a~   22 (28)
T PF08173_consen    4 FAWILGVLLACAFGILNAM   22 (28)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4699999999998887764

The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].

>PHA02867 C-type lectin protein; Provisional

Probab=86.48  E-value=0.59  Score=35.17  Aligned_cols=25  Identities=16%  Similarity=0.384  Sum_probs=21.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhee
Q psy17635          9 AGWFIGMLLAIAFLILVLILVCLIK   33 (103)
Q Consensus         9 ~gWfIg~~~ai~lLllilli~C~i~   33 (103)
                      .-.||-++.||+|+||++|+||-++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~v~~~~   37 (167)
T PHA02867         13 SCYAITVLGILCLILFTILVVVTCK   37 (167)
T ss_pred             eeehhHHHHHHHHHHHHHhhheeEE
Confidence            3578999999999999999887665

>KOG3956|consensus

Probab=85.88  E-value=0.66  Score=38.56  Aligned_cols=26  Identities=23%  Similarity=0.418  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHhheeecCCCccc
Q psy17635         16 LLAIAFLILVLILVCLIKRNRGGKYA   41 (103)
Q Consensus        16 ~~ai~lLllilli~C~i~R~rGgKY~   41 (103)
                      ..+++||||+++|--.-....|+||+
T Consensus         8 r~~~allllll~~G~~~~kkqskKyS   33 (359)
T KOG3956|consen    8 RNHFALLLLLLVIGSAHNKKQSKKYS   33 (359)
T ss_pred             HhhHHHHHHHHHhCcccchhhccccc
Confidence            34588888888887767788899997

>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function

Probab=85.09  E-value=0.94  Score=41.57  Aligned_cols=30  Identities=20%  Similarity=0.329  Sum_probs=15.5

Q ss_pred             hHHHHHHHHHHHHHHHH-HHHhheeecCCCc
Q psy17635         10 GWFIGMLLAIAFLILVL-ILVCLIKRNRGGK   39 (103)
Q Consensus        10 gWfIg~~~ai~lLllil-li~C~i~R~rGgK   39 (103)
                      ..+.++|.+++||+|++ |+++|.||.|-+|
T Consensus       273 ~fLl~ILG~~~livl~lL~vLl~yCrrkc~~  303 (807)
T PF10577_consen  273 VFLLAILGGTALIVLILLCVLLCYCRRKCLK  303 (807)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence            34466666666666553 3333334544444

>PHA02650 hypothetical protein; Provisional

Probab=84.37  E-value=2.2  Score=29.13  Aligned_cols=34  Identities=12%  Similarity=0.201  Sum_probs=17.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhheeecCCCc
Q psy17635          6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGK   39 (103)
Q Consensus         6 ~at~gWfIg~~~ai~lLllilli~C~i~R~rGgK   39 (103)
                      .....|+|.++.++.+++|+.+-+=.++|+-.|.
T Consensus        47 ~~~~~~ii~i~~v~i~~l~~flYLK~~~r~~~~~   80 (81)
T PHA02650         47 FNGQNFIFLIFSLIIVALFSFFVFKGYTRNLNGR   80 (81)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence            3334444444444444444444455677876653

>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT

Probab=84.11  E-value=1.6  Score=24.63  Aligned_cols=19  Identities=42%  Similarity=0.749  Sum_probs=15.6

Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q psy17635          9 AGWFIGMLLAIAFLILVLI   27 (103)
Q Consensus         9 ~gWfIg~~~ai~lLllill   27 (103)
                      ..|++|+..|+++.++..+
T Consensus         4 faWilG~~lA~~~~v~~a~   22 (30)
T TIGR02106         4 FAWILGTLLACAFGVLNAM   22 (30)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3699999999988887664

This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.

>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes

Probab=84.04  E-value=1.4  Score=37.81  Aligned_cols=38  Identities=21%  Similarity=0.504  Sum_probs=28.1

Q ss_pred             CCcchhhhhHHHHHHHHHHHHHHHHHHHhheeecCCCc
Q psy17635          2 PSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGK   39 (103)
Q Consensus         2 ~~~~~at~gWfIg~~~ai~lLllilli~C~i~R~rGgK   39 (103)
                      |.-+....|.|||++++|||..+.++++--++.-+|+-
T Consensus        61 pNHGlhaagFfvaflvslVL~~l~~f~l~r~~~l~~~~   98 (429)
T PF12297_consen   61 PNHGLHAAGFFVAFLVSLVLTWLCFFLLARTRCLQGRP   98 (429)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence            45577889999999999999988887775444444433

Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=83.41  E-value=0.44  Score=35.84  Aligned_cols=16  Identities=6%  Similarity=0.241  Sum_probs=7.8

Q ss_pred             HHHHhheeecCCCccc
Q psy17635         26 LILVCLIKRNRGGKYA   41 (103)
Q Consensus        26 lli~C~i~R~rGgKY~   41 (103)
                      +|+.|||.|+|--.|-
T Consensus        68 ~lvf~~c~r~kktdfi   83 (154)
T PF04478_consen   68 ALVFIFCIRRKKTDFI   83 (154)
T ss_pred             HhheeEEEecccCccc
Confidence            3334555555544554

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain

Probab=83.06  E-value=2.4  Score=22.96  Aligned_cols=16  Identities=13%  Similarity=0.146  Sum_probs=9.2

Q ss_pred             CCcchhhhhHHHHHHH
Q psy17635          2 PSDTVATAGWFIGMLL   17 (103)
Q Consensus         2 ~~~~~at~gWfIg~~~   17 (103)
                      |+++-..+.|++.+..
T Consensus         3 P~TG~~~~~~~~~~G~   18 (34)
T TIGR01167         3 PKTGESGNSLLLLLGL   18 (34)
T ss_pred             CCCCCcccHHHHHHHH
Confidence            5666555566655543

A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.

>PHA02947 S-S bond formation pathway protein; Provisional

Probab=83.01  E-value=0.78  Score=36.17  Aligned_cols=34  Identities=35%  Similarity=0.636  Sum_probs=22.7

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHhheeecCCCcc
Q psy17635          5 TVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKY   40 (103)
Q Consensus         5 ~~at~gWfIg~~~ai~lLllilli~C~i~R~rGgKY   40 (103)
                      +++..-|||.  ++++.+++.++.+|.+||.=+=||
T Consensus       174 ~~~~~~W~i~--~~~~i~~i~~i~i~~irR~i~lky  207 (215)
T PHA02947        174 PYSNKPWFIV--GVVIILIIFVIAICSIKRKINLKY  207 (215)
T ss_pred             CcCCCchHHH--HHHHHHHHHHHHHHHHHHHheeeE
Confidence            4556689998  443444444555899999877776

>COG4818 Predicted membrane protein [Function unknown]

Probab=82.60  E-value=1.1  Score=31.73  Aligned_cols=32  Identities=31%  Similarity=0.765  Sum_probs=23.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhheeecCCCccc
Q psy17635          8 TAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYA   41 (103)
Q Consensus         8 t~gWfIg~~~ai~lLllilli~C~i~R~rGgKY~   41 (103)
                      +.||++.-+..  +..+|+-++|.+|-.||.+|-
T Consensus        57 ~Ig~lls~~v~--l~a~iLwlv~mykAyrGe~fK   88 (105)
T COG4818          57 YIGWLLSGLVG--LAAFILWLVCMYKAYRGERFK   88 (105)
T ss_pred             hhHHHHHhHHH--HHHHHHHHHHHHHHHcCCeec
Confidence            34777766554  444566678999999999994

>PHA02844 putative transmembrane protein; Provisional

Probab=82.52  E-value=2.6  Score=28.40  Aligned_cols=29  Identities=14%  Similarity=0.392  Sum_probs=11.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhheee
Q psy17635          6 VATAGWFIGMLLAIAFLILVLILVCLIKR   34 (103)
Q Consensus         6 ~at~gWfIg~~~ai~lLllilli~C~i~R   34 (103)
                      .....|+|.++.++.+++++.+-+=.++|
T Consensus        46 ~~~~~~ii~i~~v~~~~~~~flYLK~~~r   74 (75)
T PHA02844         46 SSTKIWILTIIFVVFATFLTFLYLKAVPR   74 (75)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence            33444444433333333333333333444

>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source

Probab=82.33  E-value=1.5  Score=30.20  Aligned_cols=25  Identities=16%  Similarity=0.603  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHhheeecCCCc
Q psy17635         15 MLLAIAFLILVLILVCLIKRNRGGK   39 (103)
Q Consensus        15 ~~~ai~lLllilli~C~i~R~rGgK   39 (103)
                      +|..++.|++|+|++-++.-+.+|.
T Consensus        27 lMtILivLVIIiLlImlfqsSS~~~   51 (85)
T PF10717_consen   27 LMTILIVLVIIILLIMLFQSSSNGN   51 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCC
Confidence            4555555555555555555444443

Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=82.28  E-value=0.78  Score=37.37  Aligned_cols=26  Identities=27%  Similarity=0.599  Sum_probs=19.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhheee
Q psy17635          9 AGWFIGMLLAIAFLILVLILVCLIKR   34 (103)
Q Consensus         9 ~gWfIg~~~ai~lLllilli~C~i~R   34 (103)
                      +.=+|+-++||++++||++|+.+|-|
T Consensus       255 ~t~I~aSiiaIliIVLIMvIIYLILR  280 (299)
T PF02009_consen  255 TTAIIASIIAILIIVLIMVIIYLILR  280 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34467777788888888888877754

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ)

Probab=81.72  E-value=3.9  Score=24.32  Aligned_cols=32  Identities=9%  Similarity=0.289  Sum_probs=16.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhheeecCCCcc
Q psy17635          9 AGWFIGMLLAIAFLILVLILVCLIKRNRGGKY   40 (103)
Q Consensus         9 ~gWfIg~~~ai~lLllilli~C~i~R~rGgKY   40 (103)
                      +++.-.+...+.+++++.++++..++++..+|
T Consensus         7 ~~~~~~~~~v~~~~~F~gi~~w~~~~~~k~~~   38 (49)
T PF05545_consen    7 QGFARSIGTVLFFVFFIGIVIWAYRPRNKKRF   38 (49)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccchhhH
Confidence            34444444455555566555665555553333

FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=80.71  E-value=1.9  Score=28.10  Aligned_cols=6  Identities=33%  Similarity=1.458  Sum_probs=1.8

Q ss_pred             HHHHHh
Q psy17635         25 VLILVC   30 (103)
Q Consensus        25 illi~C   30 (103)
                      |++++|
T Consensus        83 i~~~~~   88 (89)
T PF00957_consen   83 IIIVIC   88 (89)
T ss_dssp             HHHTT-
T ss_pred             HHHHHh
Confidence            333334

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	92.96
2knc_A	54	Integrin alpha-IIB; transmembrane signaling, prote	92.58
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	91.54
2l8s_A	54	Integrin alpha-1; transmembrane region, detergent	90.26
2k1a_A	42	Integrin alpha-IIB; single-PASS transmembrane segm	87.13
1cd1_A	315	CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein,	83.02
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	82.6
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	80.13

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=92.96  E-value=0.018  Score=50.32  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhheeecCCCccc
Q psy17635          6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYA   41 (103)
Q Consensus         6 ~at~gWfIg~~~ai~lLllilli~C~i~R~rGgKY~   41 (103)
                      +...++++.++|+++||+++|+++|+.||++..|-+
T Consensus       702 l~~~aii~il~~~~~ll~~~ll~~~~~~~~~~~k~~  737 (880)
T 1q55_A          702 FDLPIILVILGSVLALLILFLLLLLFLKRKKVVKEP  737 (880)
T ss_dssp             ------------------------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCC
Confidence            444455555666666666666666665554444444

>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=92.58  E-value=0.082  Score=32.51  Aligned_cols=30  Identities=27%  Similarity=0.524  Sum_probs=15.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHH--H---hheeecC
Q psy17635          7 ATAGWFIGMLLAIAFLILVLIL--V---CLIKRNR   36 (103)
Q Consensus         7 at~gWfIg~~~ai~lLllilli--~---C~i~R~r   36 (103)
                      ....|+|.+-+...||+|.+++  +   -|.||++
T Consensus         9 ~vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~   43 (54)
T 2knc_A            9 AIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR   43 (54)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence            3456766554443444433333  2   4557765

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=91.54  E-value=0.15  Score=28.60  Aligned_cols=27  Identities=15%  Similarity=0.191  Sum_probs=12.8

Q ss_pred             hhhH-HHHHHHHHHHHHHHHHHHhheee
Q psy17635          8 TAGW-FIGMLLAIAFLILVLILVCLIKR   34 (103)
Q Consensus         8 t~gW-fIg~~~ai~lLllilli~C~i~R   34 (103)
                      +..+ .++++.++++|+++++++++++|
T Consensus        11 ~~~~I~~~vv~Gv~ll~~iv~~~~~~~r   38 (41)
T 2k9y_A           11 GNLAVIGGVAVGVVLLLVLAGVGFFIHR   38 (41)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             ceEEEEeehhHHHHHHHHHHHHheeEee
Confidence            3355 34455556665523344444444

>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}

Probab=90.26  E-value=0.24  Score=30.47  Aligned_cols=29  Identities=24%  Similarity=0.410  Sum_probs=14.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHH--H---HhheeecC
Q psy17635          8 TAGWFIGMLLAIAFLILVLI--L---VCLIKRNR   36 (103)
Q Consensus         8 t~gWfIg~~~ai~lLllill--i---~C~i~R~r   36 (103)
                      ...|+|.+-....||+|+++  +   +-|.||+|
T Consensus         7 vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~   40 (54)
T 2l8s_A            7 VPLWVILLSAFAGLLLLMLLILALWKIGFFKRPL   40 (54)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence            34676654443333333333  3   24667776

>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A

Probab=87.13  E-value=0.63  Score=27.08  Aligned_cols=29  Identities=24%  Similarity=0.517  Sum_probs=13.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH-----hheeecC
Q psy17635          8 TAGWFIGMLLAIAFLILVLILV-----CLIKRNR   36 (103)
Q Consensus         8 t~gWfIg~~~ai~lLllilli~-----C~i~R~r   36 (103)
                      ...|.|.+-+...+|+|.+++.     -|.||+|
T Consensus         8 vp~wiIi~s~l~GLllL~li~~~LwK~GFFkR~~   41 (42)
T 2k1a_A            8 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR   41 (42)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence            3467665544433444333332     3556654

>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1

Probab=83.02  E-value=0.24  Score=37.95  Aligned_cols=19  Identities=5%  Similarity=0.247  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhheeecCCCc
Q psy17635         21 FLILVLILVCLIKRNRGGK   39 (103)
Q Consensus        21 lLllilli~C~i~R~rGgK   39 (103)
                      |+||++|++++++|+++.|
T Consensus       294 l~ll~~~~~~~~~~~~~~~  312 (315)
T 1cd1_A          294 LVVVGAVVYYIWRRRSAYQ  312 (315)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHhheehhcCCC
Confidence            4444455344456655544

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=82.60  E-value=0.82  Score=26.79  Aligned_cols=23  Identities=26%  Similarity=0.532  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHH-hheeec
Q psy17635         13 IGMLLAIAFLILVLILV-CLIKRN   35 (103)
Q Consensus        13 Ig~~~ai~lLllilli~-C~i~R~   35 (103)
                      .|++.+++++++|++.+ +|++|.
T Consensus        15 ~gVVgGv~~~~ii~~~~~~~~RRr   38 (44)
T 2ks1_B           15 TGMVGALLLLLVVALGIGLFMRRR   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eehhHHHHHHHHHHHHHHHHhhhh
Confidence            56666666666555554 444444

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=80.13  E-value=1.8  Score=27.80  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=10.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q psy17635          9 AGWFIGMLLAIAFLILVLILV   29 (103)
Q Consensus         9 ~gWfIg~~~ai~lLllilli~   29 (103)
                      .+-++|++.+|+|+-|++|++
T Consensus        11 ~~Iv~gvi~gilliGllllli   31 (79)
T 2knc_B           11 LVVLLSVMGAILLIGLAALLI   31 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHH
Confidence            344456666555555544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00