Psyllid ID: psy17656

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
MTMTEIDTESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNYRL
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEEEccccEEEEEEcccccHHHHHHHHHHccccEEEccccEEEEcccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccccEEEEEEEEEcccEEEEEEEcccEHHHHHHHHHHHHccccHHHEEEEEEEccccccEEEEccccc
Coil and Loop (DISEMBL)
mtmteidtesappktkplkgkIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLErdyfgltydnkydpqcwlemvnyrl
Flexible Loop (DISEMBL)
mtmteidtesappktkplkgKIEVAHitlldgslldVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNYRL
Low Complexity Region (SEG)
MTMTEIDTESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNYRL
Disordered region (IsUnstruct)
********************KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY**
Disordered Region (DISOPRED)
*************************HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNYR*
Disordered Region (DISEMBL)
****************PLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNYRL
Disordered Region (DISPRO)
******************KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNYRL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTMTEIDTESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNYRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	85	2.2.26 [Sep-21-2011]
Q9V8R9	1698	Protein 4.1 homolog OS=Dr	no	N/A	0.717	0.035	0.573	4e-15
O70318	988	Band 4.1-like protein 2 O	yes	N/A	0.823	0.070	0.453	2e-12
Q9WV92	929	Band 4.1-like protein 3 O	no	N/A	0.623	0.057	0.509	6e-11
O43491	1005	Band 4.1-like protein 2 O	yes	N/A	0.870	0.073	0.44	1e-10
Q9Y2J2	1087	Band 4.1-like protein 3 O	no	N/A	0.623	0.048	0.509	1e-10
Q9H4G0	881	Band 4.1-like protein 1 O	no	N/A	0.788	0.076	0.432	1e-09
Q9Z2H5	879	Band 4.1-like protein 1 O	no	N/A	0.788	0.076	0.432	1e-09
Q9WTP0	879	Band 4.1-like protein 1 O	no	N/A	0.788	0.076	0.432	2e-09
Q9N179	617	Protein 4.1 OS=Bos taurus	no	N/A	0.623	0.085	0.471	4e-09
P48193	858	Protein 4.1 OS=Mus muscul	no	N/A	0.623	0.061	0.471	8e-09

>sp|Q9V8R9|41_DROME Protein 4.1 homolog OS=Drosophila melanogaster GN=cora PE=1 SV=1

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 48/61 (78%)

Query: 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
          GK  +A +TLLDGSLLDV+I+RKA G D+ + +C  LNL+E+DYFGLTY+   DP+ WL+
Sbjct: 29 GKPALARVTLLDGSLLDVSIDRKAIGRDVINSICAGLNLIEKDYFGLTYETPTDPRTWLD 88

Query: 80 M 80
          +
Sbjct: 89 L 89

An integral component of the septate junction. May play a role in cell-cell interactions that are necessary for proper development. Vital for embryonic development.
Drosophila melanogaster (taxid: 7227)

>sp|O70318|E41L2_MOUSE Band 4.1-like protein 2 OS=Mus musculus GN=Epb41l2 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 52/75 (69%), Gaps = 5/75 (6%)

Query: 5   EIDTESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYF 64
           E+ ++ A  KTK +     +A +TLLDG+     +E++AKG+ LFDRVC+HLNLLE+DYF
Sbjct: 198 EVASQKATKKTKTV-----LAKVTLLDGTEYSCDLEKRAKGQVLFDRVCEHLNLLEKDYF 252

Query: 65  GLTYDNKYDPQCWLE 79
           GL + +  + + WL+
Sbjct: 253 GLLFQDHPEQKNWLD 267

Mus musculus (taxid: 10090)

>sp|Q9WV92|E41L3_MOUSE Band 4.1-like protein 3 OS=Mus musculus GN=Epb41l3 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query: 27  ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
           +TLLDGS     ++++++G+ LFD+VC+HLNLLE+DYFGLTY +  + + WL+
Sbjct: 122 VTLLDGSEYGCDVDKRSRGQVLFDKVCEHLNLLEKDYFGLTYRDAENQKNWLD 174

Isoform 2 (heart-specific) has the complete spectrin--actin-binding (SAB) domain and fully interacts with spectrin and actin.

Mus musculus (taxid: 10090)

>sp|O43491|E41L2_HUMAN Band 4.1-like protein 2 OS=Homo sapiens GN=EPB41L2 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 5   EIDTESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYF 64
           E+  E A  K    K K     +TLLDG+     +E+ AKG+ LFD+VC+HLNLLE+DYF
Sbjct: 201 ELKAEKASQKVTK-KTKTVQCKVTLLDGTEYSCDLEKHAKGQVLFDKVCEHLNLLEKDYF 259

Query: 65  GLTYDNKYDPQCWLE 79
           GL +    + + WL+
Sbjct: 260 GLLFQESPEQKNWLD 274

Homo sapiens (taxid: 9606)

>sp|Q9Y2J2|E41L3_HUMAN Band 4.1-like protein 3 OS=Homo sapiens GN=EPB41L3 PE=1 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 27  ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
           + LLDGS     +E++++G+ LFD+VC+HLNLLE+DYFGLTY +  + + WL+
Sbjct: 114 VILLDGSEYTCDVEKRSRGQVLFDKVCEHLNLLEKDYFGLTYRDAENQKNWLD 166

Critical growth regulator in the pathogenesis of meningiomas.

Homo sapiens (taxid: 9606)

>sp|Q9H4G0|E41L1_HUMAN Band 4.1-like protein 1 OS=Homo sapiens GN=EPB41L1 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 43/67 (64%)

Query: 13  PKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKY 72
           P+    K K  +  +TLLD S  +  +E+  +G+ LFD VC+HLNLLE+DYFGLT+ +  
Sbjct: 87  PQKIAKKYKSAICRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDYFGLTFCDAD 146

Query: 73  DPQCWLE 79
             + WL+
Sbjct: 147 SQKNWLD 153

May function to confer stability and plasticity to neuronal membrane via multiple interactions, including the spectrin-actin-based cytoskeleton, integral membrane channels and membrane-associated guanylate kinases.

Homo sapiens (taxid: 9606)

>sp|Q9Z2H5|E41L1_MOUSE Band 4.1-like protein 1 OS=Mus musculus GN=Epb41l1 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 43/67 (64%)

Query: 13  PKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKY 72
           P+    K K  +  +TLLD S  +  +E+  +G+ LFD VC+HLNLLE+DYFGLT+ +  
Sbjct: 87  PQKIAKKFKSAICRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDYFGLTFCDAD 146

Query: 73  DPQCWLE 79
             + WL+
Sbjct: 147 SQKNWLD 153

May function to confer stability and plasticity to neuronal membrane via multiple interactions, including the spectrin-actin-based cytoskeleton, integral membrane channels and membrane-associated guanylate kinases.

Mus musculus (taxid: 10090)

>sp|Q9WTP0|E41L1_RAT Band 4.1-like protein 1 OS=Rattus norvegicus GN=Epb41l1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 42/67 (62%)

Query: 13  PKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKY 72
           P+    K K     +TLLD S  +  +E+  +G+ LFD VC+HLNLLE+DYFGLT+ +  
Sbjct: 87  PQKIAKKFKSATCRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDYFGLTFCDAD 146

Query: 73  DPQCWLE 79
             + WL+
Sbjct: 147 SQKNWLD 153

May function to confer stability and plasticity to neuronal membrane via multiple interactions, including the spectrin-actin-based cytoskeleton, integral membrane channels and membrane-associated guanylate kinases.

Rattus norvegicus (taxid: 10116)

>sp|Q9N179|41_BOVIN Protein 4.1 OS=Bos taurus GN=EPB41 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query: 27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
          ++LLD ++ +  +E+ AKG+DL  RVC+HLNLLE DYFGL   +    + WL+
Sbjct: 5  VSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLD 57

Protein 4.1 is a major structural element of the erythrocyte membrane skeleton. It plays a key role in regulating membrane physical properties of mechanical stability and deformability by stabilizing spectrin-actin interaction. Recruits DLG1 to membranes.

Bos taurus (taxid: 9913)

>sp|P48193|41_MOUSE Protein 4.1 OS=Mus musculus GN=Epb41 PE=1 SV=2

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query: 27  ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
           ++LLD ++ +  +E+ AKG+DL  RVC+HLNLLE DYFGL   +    + WL+
Sbjct: 215 VSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLALWDSATSKTWLD 267

Protein 4.1 is a major structural element of the erythrocyte membrane skeleton. It plays a key role in regulating membrane physical properties of mechanical stability and deformability by stabilizing spectrin-actin interaction. Recruits DLG1 to membranes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
444175741	389	coracle, partial [Blattella germanica]	0.858	0.187	0.608	2e-20
328720419	1052	PREDICTED: protein 4.1 homolog isoform 3	0.917	0.074	0.578	4e-19
328720415	1124	PREDICTED: protein 4.1 homolog isoform 2	0.917	0.069	0.578	5e-19
328720417	1091	PREDICTED: protein 4.1 homolog isoform 1	0.917	0.071	0.578	5e-19
270009420	2656	hypothetical protein TcasGA2_TC008668 [T	0.882	0.028	0.518	2e-16
91087651	2524	PREDICTED: similar to coracle [Tribolium	0.882	0.029	0.518	2e-16
345489384	1934	PREDICTED: hypothetical protein LOC10012	0.717	0.031	0.606	6e-16
345489388	1996	PREDICTED: hypothetical protein LOC10012	0.717	0.030	0.606	6e-16
345489386	1969	PREDICTED: hypothetical protein LOC10012	0.717	0.030	0.606	6e-16
345489382	1961	PREDICTED: hypothetical protein LOC10012	0.717	0.031	0.606	7e-16

>gi|444175741|emb|CCI09964.1| coracle, partial [Blattella germanica]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 64/74 (86%), Gaps = 1/74 (1%)

Query: 8  TESAPPKTK-PLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGL 66
          +  +P K K P+KGK+ +A +TLLDG+LLDV IERK+KG++L ++VC+HLNLLE+DYFGL
Sbjct: 22 SSPSPSKKKAPIKGKLVLARVTLLDGTLLDVNIERKSKGQELLEKVCEHLNLLEKDYFGL 81

Query: 67 TYDNKYDPQCWLEM 80
          TY++++DP+ WLEM
Sbjct: 82 TYEDRHDPRNWLEM 95

Source: Blattella germanica

Species: Blattella germanica

Genus: Blattella

Family: Ectobiidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720419|ref|XP_003247025.1| PREDICTED: protein 4.1 homolog isoform 3 [Acyrthosiphon pisum]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 62/83 (74%), Gaps = 5/83 (6%)

Query: 3  MTEIDTESA----PPKTKPL-KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLN 57
          MT ++ ES+     PK K + KGK  +A + LLDGS LDV I+RKAKG++L D+VCD LN
Sbjct: 1  MTAMENESSDGNVSPKKKSIRKGKTALARVLLLDGSYLDVQIDRKAKGQELLDQVCDRLN 60

Query: 58 LLERDYFGLTYDNKYDPQCWLEM 80
          LLERDYFGL+Y+++ DP  WLEM
Sbjct: 61 LLERDYFGLSYEDRRDPHNWLEM 83

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720415|ref|XP_003247024.1| PREDICTED: protein 4.1 homolog isoform 2 [Acyrthosiphon pisum]

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 62/83 (74%), Gaps = 5/83 (6%)

Query: 3  MTEIDTESA----PPKTKPL-KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLN 57
          MT ++ ES+     PK K + KGK  +A + LLDGS LDV I+RKAKG++L D+VCD LN
Sbjct: 1  MTAMENESSDGNVSPKKKSIRKGKTALARVLLLDGSYLDVQIDRKAKGQELLDQVCDRLN 60

Query: 58 LLERDYFGLTYDNKYDPQCWLEM 80
          LLERDYFGL+Y+++ DP  WLEM
Sbjct: 61 LLERDYFGLSYEDRRDPHNWLEM 83

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720417|ref|XP_001943226.2| PREDICTED: protein 4.1 homolog isoform 1 [Acyrthosiphon pisum]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 62/83 (74%), Gaps = 5/83 (6%)

Query: 3  MTEIDTESA----PPKTKPL-KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLN 57
          MT ++ ES+     PK K + KGK  +A + LLDGS LDV I+RKAKG++L D+VCD LN
Sbjct: 1  MTAMENESSDGNVSPKKKSIRKGKTALARVLLLDGSYLDVQIDRKAKGQELLDQVCDRLN 60

Query: 58 LLERDYFGLTYDNKYDPQCWLEM 80
          LLERDYFGL+Y+++ DP  WLEM
Sbjct: 61 LLERDYFGLSYEDRRDPHNWLEM 83

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009420|gb|EFA05868.1| hypothetical protein TcasGA2_TC008668 [Tribolium castaneum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/79 (51%), Positives = 63/79 (79%), Gaps = 4/79 (5%)

Query: 6  IDTESAPPKTKPLK-GKIE---VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER 61
          ID +S+P K+K    G+     +AH+T+LDG++LDV+IERKAKG+DL D+VC+ +NL+E+
Sbjct: 9  IDNDSSPAKSKSSTLGRSTGNTLAHVTMLDGTVLDVSIERKAKGKDLLDKVCEAINLIEK 68

Query: 62 DYFGLTYDNKYDPQCWLEM 80
          DYFGL Y +++DP+ WL++
Sbjct: 69 DYFGLVYADRHDPRNWLDL 87

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91087651|ref|XP_973434.1| PREDICTED: similar to coracle [Tribolium castaneum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/79 (51%), Positives = 63/79 (79%), Gaps = 4/79 (5%)

Query: 6  IDTESAPPKTKPLK-GKIE---VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER 61
          ID +S+P K+K    G+     +AH+T+LDG++LDV+IERKAKG+DL D+VC+ +NL+E+
Sbjct: 9  IDNDSSPAKSKSSTLGRSTGNTLAHVTMLDGTVLDVSIERKAKGKDLLDKVCEAINLIEK 68

Query: 62 DYFGLTYDNKYDPQCWLEM 80
          DYFGL Y +++DP+ WL++
Sbjct: 69 DYFGLVYADRHDPRNWLDL 87

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489384|ref|XP_003426126.1| PREDICTED: hypothetical protein LOC100120402 isoform 3 [Nasonia vitripennis]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/61 (60%), Positives = 50/61 (81%)

Query: 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
          GK+ +A +TLLDG++ D  IERKAKG +L DRVC  +NLLE+DYFGL Y++KYDP+ WL+
Sbjct: 31 GKLALAKVTLLDGTVRDFNIERKAKGYELLDRVCQSMNLLEKDYFGLIYEDKYDPRNWLD 90

Query: 80 M 80
          +
Sbjct: 91 L 91

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489388|ref|XP_003426127.1| PREDICTED: hypothetical protein LOC100120402 isoform 4 [Nasonia vitripennis]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/61 (60%), Positives = 50/61 (81%)

Query: 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
          GK+ +A +TLLDG++ D  IERKAKG +L DRVC  +NLLE+DYFGL Y++KYDP+ WL+
Sbjct: 31 GKLALAKVTLLDGTVRDFNIERKAKGYELLDRVCQSMNLLEKDYFGLIYEDKYDPRNWLD 90

Query: 80 M 80
          +
Sbjct: 91 L 91

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489386|ref|XP_001604049.2| PREDICTED: hypothetical protein LOC100120402 isoform 1 [Nasonia vitripennis]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/61 (60%), Positives = 50/61 (81%)

Query: 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
          GK+ +A +TLLDG++ D  IERKAKG +L DRVC  +NLLE+DYFGL Y++KYDP+ WL+
Sbjct: 31 GKLALAKVTLLDGTVRDFNIERKAKGYELLDRVCQSMNLLEKDYFGLIYEDKYDPRNWLD 90

Query: 80 M 80
          +
Sbjct: 91 L 91

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489382|ref|XP_003426125.1| PREDICTED: hypothetical protein LOC100120402 isoform 2 [Nasonia vitripennis]

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/61 (60%), Positives = 50/61 (81%)

Query: 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
          GK+ +A +TLLDG++ D  IERKAKG +L DRVC  +NLLE+DYFGL Y++KYDP+ WL+
Sbjct: 31 GKLALAKVTLLDGTVRDFNIERKAKGYELLDRVCQSMNLLEKDYFGLIYEDKYDPRNWLD 90

Query: 80 M 80
          +
Sbjct: 91 L 91

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
FB|FBgn0010434	1698	cora "coracle" [Drosophila mel	0.894	0.044	0.513	1.4e-15
UNIPROTKB|E1BUA1	687	Gga.55707 "Uncharacterized pro	0.882	0.109	0.453	1.1e-12
UNIPROTKB|D4A361	823	Epb4.1l2 "Similar to protein 4	0.882	0.091	0.460	2.3e-12
MGI|MGI:103009	988	Epb4.1l2 "erythrocyte protein	0.870	0.074	0.480	2.9e-12
UNIPROTKB|E1BDB0	1001	EPB41L2 "Uncharacterized prote	0.870	0.073	0.466	4.8e-12
ZFIN|ZDB-GENE-021106-1	838	epb41l3b "erythrocyte membrane	0.694	0.070	0.525	6.2e-12
UNIPROTKB|I3LUL5	557	LOC100624689 "Uncharacterized	0.858	0.131	0.447	1.9e-11
UNIPROTKB|Q4VXN1	199	EPB41L1 "Band 4.1-like protein	0.882	0.376	0.407	2.8e-11
UNIPROTKB|Q4VXN5	188	EPB41L1 "Band 4.1-like protein	0.882	0.398	0.407	2.8e-11
UNIPROTKB|Q4VXN6	168	EPB41L1 "Band 4.1-like protein	0.882	0.446	0.407	2.8e-11

FB|FBgn0010434 cora "coracle" [Drosophila melanogaster (taxid:7227)]

 Score = 211 (79.3 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query:     5 EIDTESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYF 64
             E  T+S P  +    GK  +A +TLLDGSLLDV+I+RKA G D+ + +C  LNL+E+DYF
Sbjct:    14 ETPTKSKPKSSSSSHGKPALARVTLLDGSLLDVSIDRKAIGRDVINSICAGLNLIEKDYF 73

Query:    65 GLTYDNKYDPQCWLEM 80
             GLTY+   DP+ WL++
Sbjct:    74 GLTYETPTDPRTWLDL 89

GO:0048598 "embryonic morphogenesis" evidence=IMP

GO:0005918 "septate junction" evidence=NAS;IDA;TAS

GO:0045169 "fusome" evidence=IDA

GO:0045170 "spectrosome" evidence=IDA

GO:0005856 "cytoskeleton" evidence=ISS

GO:0007010 "cytoskeleton organization" evidence=ISS

GO:0007391 "dorsal closure" evidence=NAS;TAS

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0007435 "salivary gland morphogenesis" evidence=TAS

GO:0008362 "chitin-based embryonic cuticle biosynthetic process" evidence=TAS

GO:0019991 "septate junction assembly" evidence=TAS

GO:0009790 "embryo development" evidence=NAS

GO:0016327 "apicolateral plasma membrane" evidence=NAS

GO:0045216 "cell-cell junction organization" evidence=TAS

GO:0006612 "protein targeting to membrane" evidence=TAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0003779 "actin binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0035321 "maintenance of imaginal disc-derived wing hair orientation" evidence=IMP

GO:0060857 "establishment of glial blood-brain barrier" evidence=IMP

GO:0007527 "adult somatic muscle development" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005920 "smooth septate junction" evidence=IDA

UNIPROTKB|E1BUA1 Gga.55707 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 34/75 (45%), Positives = 48/75 (64%)

Query:     5 EIDTESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYF 64
             E+ T  + P+  P K K     + LLDG+     +E+KAKG+ LFD+VC+HLNLLE+DYF
Sbjct:    20 EVQTAESIPQKPPKKIKTVQCKVVLLDGTEYSCDLEKKAKGQILFDKVCEHLNLLEKDYF 79

Query:    65 GLTYDNKYDPQCWLE 79
             GL +    D + WL+
Sbjct:    80 GLLFYENSDQKNWLD 94

GO:0003779 "actin binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030866 "cortical actin cytoskeleton organization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0042731 "PH domain binding" evidence=IEA

UNIPROTKB|D4A361 Epb4.1l2 "Similar to protein 4.1G (Predicted), isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 35/76 (46%), Positives = 50/76 (65%)

Query:     4 TEIDTESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDY 63
             +E+  E A  K    K K  +A +TLLDG+     +E++AKG+ LFDRVC+HLNLLE+DY
Sbjct:   195 SELKAEVASQKAAK-KTKTVLAKVTLLDGTEFSCDLEKRAKGQALFDRVCEHLNLLEKDY 253

Query:    64 FGLTYDNKYDPQCWLE 79
             FGL +    + + WL+
Sbjct:   254 FGLIFQEHPEQKNWLD 269

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

MGI|MGI:103009 Epb4.1l2 "erythrocyte protein band 4.1-like 2" [Mus musculus (taxid:10090)]

 Score = 177 (67.4 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 37/77 (48%), Positives = 53/77 (68%)

Query:     4 TEIDTESAPPK-TKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERD 62
             +E+  E A  K TK  K K  +A +TLLDG+     +E++AKG+ LFDRVC+HLNLLE+D
Sbjct:   193 SELKAEVASQKATK--KTKTVLAKVTLLDGTEYSCDLEKRAKGQVLFDRVCEHLNLLEKD 250

Query:    63 YFGLTYDNKYDPQCWLE 79
             YFGL + +  + + WL+
Sbjct:   251 YFGLLFQDHPEQKNWLD 267

GO:0003779 "actin binding" evidence=ISS

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=ISS

GO:0030507 "spectrin binding" evidence=ISS;IDA

GO:0030866 "cortical actin cytoskeleton organization" evidence=IEA

GO:0042731 "PH domain binding" evidence=IDA

UNIPROTKB|E1BDB0 EPB41L2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 4.8e-12, P = 4.8e-12
 Identities = 35/75 (46%), Positives = 48/75 (64%)

Query:     5 EIDTESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYF 64
             E+  E A  K  P K K     +TLLDGS     +E++AKG+ LFD+VC+HLNLLE+DYF
Sbjct:   196 ELRAEKASLKA-PKKTKTVQCKVTLLDGSEYSCDLEKRAKGQVLFDKVCEHLNLLEKDYF 254

Query:    65 GLTYDNKYDPQCWLE 79
             GL +    + + WL+
Sbjct:   255 GLVFQENPEQKNWLD 269

GO:0042731 "PH domain binding" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030866 "cortical actin cytoskeleton organization" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

ZFIN|ZDB-GENE-021106-1 epb41l3b "erythrocyte membrane protein band 4.1-like 3b" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 6.2e-12, P = 6.2e-12
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query:    21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
             +I    ITLLDG+    T+E++A+G+ LFD+VCDHLNLLE+DYFG+TY +    + WL+
Sbjct:    64 RIMECKITLLDGTDYTCTVEKRARGQVLFDKVCDHLNLLEKDYFGITYSDTESQKNWLD 122

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|I3LUL5 LOC100624689 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 166 (63.5 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 34/76 (44%), Positives = 49/76 (64%)

Query:     5 EIDTESAPPK-TKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDY 63
             E+  E A  K TK  K K     +TLLDG+     +E++AKG+ LFD+VC+HLNLLE+DY
Sbjct:   205 ELKAEKASQKATK--KTKTVQCKVTLLDGTEYSCDLEKRAKGQVLFDKVCEHLNLLEKDY 262

Query:    64 FGLTYDNKYDPQCWLE 79
             FGL +    + + W++
Sbjct:   263 FGLVFQENPEQKNWVD 278

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q4VXN1 EPB41L1 "Band 4.1-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 31/76 (40%), Positives = 46/76 (60%)

Query:     4 TEIDTESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDY 63
             T    + +P K    K K  +  +TLLD S  +  +E+  +G+ LFD VC+HLNLLE+DY
Sbjct:    17 TPSKAQKSPQKIAK-KYKSAICRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDY 75

Query:    64 FGLTYDNKYDPQCWLE 79
             FGLT+ +    + WL+
Sbjct:    76 FGLTFCDADSQKNWLD 91

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

UNIPROTKB|Q4VXN5 EPB41L1 "Band 4.1-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 31/76 (40%), Positives = 46/76 (60%)

Query:     4 TEIDTESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDY 63
             T    + +P K    K K  +  +TLLD S  +  +E+  +G+ LFD VC+HLNLLE+DY
Sbjct:    79 TPSKAQKSPQKIAK-KYKSAICRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDY 137

Query:    64 FGLTYDNKYDPQCWLE 79
             FGLT+ +    + WL+
Sbjct:   138 FGLTFCDADSQKNWLD 153

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|Q4VXN6 EPB41L1 "Band 4.1-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 31/76 (40%), Positives = 46/76 (60%)

Query:     4 TEIDTESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDY 63
             T    + +P K    K K  +  +TLLD S  +  +E+  +G+ LFD VC+HLNLLE+DY
Sbjct:    79 TPSKAQKSPQKIAK-KYKSAICRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDY 137

Query:    64 FGLTYDNKYDPQCWLE 79
             FGLT+ +    + WL+
Sbjct:   138 FGLTFCDADSQKNWLD 153

GO:0005856 "cytoskeleton" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	85
pfam09379	79	pfam09379, FERM_N, FERM N-terminal domain	6e-17
smart00295	201	smart00295, B41, Band 4	1e-11

>gnl|CDD|220215 pfam09379, FERM_N, FERM N-terminal domain

 Score = 67.6 bits (166), Expect = 6e-17
 Identities = 23/53 (43%), Positives = 39/53 (73%)

Query: 27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
          + LLDG+ L+ T+++ A G++L D+VC  L L E+DYFGL +++K + + WL+
Sbjct: 1  VRLLDGTQLEFTVDKSATGQELLDQVCQRLGLREKDYFGLQFNDKKNERIWLD 53

This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. Length = 79

>gnl|CDD|214604 smart00295, B41, Band 4

 Score = 56.9 bits (138), Expect = 1e-11
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 24 VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGL-TYDNKYDPQCWLEM 80
          V  + LLDG+ L+  ++     E+L + VC  L + E +YFGL   D   D + WL+ 
Sbjct: 1  VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLRHWLDP 58

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs. Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
KOG3530|consensus	616		99.83
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	99.82
KOG3531|consensus	1036		99.7
KOG3527|consensus	975		99.69
KOG3529|consensus	596		99.4
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	99.25
KOG0792|consensus	1144		99.24
cd01777	87	SNX27_RA Ubiquitin domain of SNX27 (sorting nexin	97.72
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	95.61
smart00455	70	RBD Raf-like Ras-binding domain.	95.57
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	95.56
PF00788	93	RA: Ras association (RalGDS/AF-6) domain; InterPro	95.44
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	95.43
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	94.41
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	94.34
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	94.27
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	93.56
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	93.19
cd01817	73	RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS	92.39
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	92.33
cd01768	87	RA RA (Ras-associating) ubiquitin domain. The RA (	92.27
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	92.2
cd01787	85	GRB7_RA RA (RAS-associated like) domain of Grb7. G	92.09
smart00314	90	RA Ras association (RalGDS/AF-6) domain. RasGTP ef	91.7
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	91.44
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	91.4
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	91.17
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	90.55
cd01818	77	TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleo	90.46
KOG3784|consensus	407		89.69
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	89.49
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	89.46
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	88.94
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	88.49
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	86.99
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	86.6
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	86.47
PTZ00044	76	ubiquitin; Provisional	86.4
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	86.34
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	86.28
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	85.99
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	85.82
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	85.02
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	84.12
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	83.5
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	83.19
KOG3531|consensus	1036		82.62

>KOG3530|consensus

Probab=99.83  E-value=5.1e-21  Score=152.05  Aligned_cols=65  Identities=38%  Similarity=0.683  Sum_probs=62.3

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY   83 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~   83 (85)
                      ..+.+.|+|.||||+.+.+++.++++|++|||+||.+|+|+|+|||||+|.|..++++||||.|+
T Consensus         7 ~k~~~~C~V~LLd~sdl~~~~pk~akGq~Lld~V~~~ldl~E~DYFGLry~D~~~~~hWLD~tK~   71 (616)
T KOG3530|consen    7 SKKDVYCRVLLLDGSDLSINFPKTAKGQELLDYVFYHLDLIEKDYFGLRYQDSSKVRHWLDPTKS   71 (616)
T ss_pred             CCcceEEEEEEecCccceeccCcccchHHHHHHHHHhhceeeeeccceeeechhhcceecCcchh
Confidence            44779999999999999999999999999999999999999999999999999999999999985

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=99.82  E-value=2.7e-20  Score=113.02  Aligned_cols=57  Identities=39%  Similarity=0.817  Sum_probs=54.0

Q ss_pred             EEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE-ecCCCCeeccccCCC
Q psy17656         27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY-DNKYDPQCWLEMVNY   83 (85)
Q Consensus        27 V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y-~d~~~~~~WLd~~K~   83 (85)
                      |.||||+..+++++++++|++||++||++|+|.|.+||||+| .++++..+|||++|+
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~   58 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKK   58 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSB
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCccc
Confidence            789999999999999999999999999999999999999999 788899999999985

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>KOG3531|consensus

Probab=99.70  E-value=2.4e-17  Score=135.36  Aligned_cols=68  Identities=37%  Similarity=0.648  Sum_probs=65.1

Q ss_pred             CCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656         16 KPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY   83 (85)
Q Consensus        16 ~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~   83 (85)
                      +...++...+.|.+||++...|.|+.+|.|++||++||+||||+|.|||||+|.|.+++++|||+.|+
T Consensus        33 ~~~~gk~~~~~~~~~~~~~~~f~~~~ka~g~vll~~vc~~lnl~e~dyfglef~~~~~~~~wld~~kp  100 (1036)
T KOG3531|consen   33 PFHLGKICFFFCVMLDDTTEVFLVQHKAIGQVLLDQVCRHLNLVECDYFGLEFQDINGNHCWLDLEKP  100 (1036)
T ss_pred             CccCCceEEEEEEEecCceeEEeecccccchHHHHHHHHhhceeeccccceeeccccCceEEecccch
Confidence            45688999999999999999999999999999999999999999999999999999999999999997

>KOG3527|consensus

Probab=99.69  E-value=1.2e-17  Score=137.24  Aligned_cols=65  Identities=48%  Similarity=0.844  Sum_probs=62.6

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY   83 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~   83 (85)
                      .++...|+|.|||++.++|.++++++|++||+.||+||||+|+|||||.|.++..++.|||+.|+
T Consensus        28 ~~k~~~~~vtlld~s~~~~~~ek~~kg~~~~~~vc~~LnliEkdyfgl~~~~~~~~~~wlD~~k~   92 (975)
T KOG3527|consen   28 VTKDAICKVTLLDGSEYSCDVEKHAKGQVLFDKVCEHLNLLEKDYFGLTYLTSSEQKNWLDPAKE   92 (975)
T ss_pred             cCCCccceEEEeeCCcceeeeecccccchhHHHHhhccchhhhhhceeEEecCCCCccccccchh
Confidence            45889999999999999999999999999999999999999999999999999999999999985

>KOG3529|consensus

Probab=99.40  E-value=9e-14  Score=111.71  Aligned_cols=66  Identities=30%  Similarity=0.479  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656         17 PLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY   83 (85)
Q Consensus        17 ~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~   83 (85)
                      .+..+.+.|+|.++|+... |.++++.+|++||++||+++||.|++||||+|.|..++.+||.++|.
T Consensus         8 ~~~~~~~~~rv~~~d~e~~-~~i~~~~t~~~l~dlv~~~~glre~~yfgl~~~d~~~~~~wl~~d~~   73 (596)
T KOG3529|consen    8 SKMTKPINVRVTTMDAELE-FAIQPKTTGKQLFDLVVKTIGLRESWYFGLQYTDSKGEPTWLKLDKK   73 (596)
T ss_pred             ccccCCcceeeeehhhhhh-hhhCcchhHHHHHHHHhccCCCchhhhcccccccCCCCcchhhccch
Confidence            3566789999999998666 99999999999999999999999999999999999999999999874

>smart00295 B41 Band 4

Probab=99.25  E-value=3.8e-11  Score=82.11  Aligned_cols=63  Identities=30%  Similarity=0.676  Sum_probs=57.5

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCe-eccccCCC
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQ-CWLEMVNY   83 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~-~WLd~~K~   83 (85)
                      +.+.|+|.++||+..++.+++.++++++++.||++++|.+..||||.+.+.++.. .||++.+.
T Consensus         2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~   65 (207)
T smart00295        2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKT   65 (207)
T ss_pred             CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccC
Confidence            5689999999999999999999999999999999999999999999999976555 89997653

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>KOG0792|consensus

Probab=99.24  E-value=1e-11  Score=104.30  Aligned_cols=63  Identities=32%  Similarity=0.601  Sum_probs=59.7

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceee-EEEecCCCCeeccccCCC
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFG-LTYDNKYDPQCWLEMVNY   83 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFG-L~y~d~~~~~~WLd~~K~   83 (85)
                      ..+.|++.|||++..+|++....+||++++.||++|+|.|++||| +.+.++.++..|||++|+
T Consensus        21 s~v~~~i~llds~~~eftls~es~gQ~~ld~V~qrL~~~e~~yFgl~~~~~k~~~~rWvdleK~   84 (1144)
T KOG0792|consen   21 SCVVCRILLLDSDVVEFTLSSESTGQELLDAVAQRLELREKEYFGLLWSPDKPDQIRWVDLEKP   84 (1144)
T ss_pred             ceEEEEEEecCCceEEEEEecCCCchhHHHHHhhhhcccccccccccccCCccCccceeccchh
Confidence            689999999999999999999999999999999999999999999 667778899999999985

>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27)

Probab=97.72  E-value=8.4e-05  Score=47.11  Aligned_cols=48  Identities=17%  Similarity=0.272  Sum_probs=43.3

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCccc--ceeeEEEec
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER--DYFGLTYDN   70 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~--dYFGL~y~d   70 (85)
                      ...+|.|+||+.+.+.+..+....++|+.||+.|+|.+.  .||+|--..
T Consensus         2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFev~   51 (87)
T cd01777           2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFALFEVI   51 (87)
T ss_pred             eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhheeeeEEe
Confidence            568999999999999999999999999999999999754  699997654

SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=95.61  E-value=0.039  Score=33.55  Aligned_cols=45  Identities=13%  Similarity=0.184  Sum_probs=37.6

Q ss_pred             EEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEe
Q psy17656         24 VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYD   69 (85)
Q Consensus        24 ~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~   69 (85)
                      .|+|.|+||+...+.+.+..+-.++++.+|+.-||.-..| .+...
T Consensus         1 ~~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~-~v~~~   45 (72)
T cd01760           1 LCRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECC-DVFLL   45 (72)
T ss_pred             CEEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHE-EEEEe
Confidence            3899999999999999999999999999999999864333 34443

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>smart00455 RBD Raf-like Ras-binding domain

Probab=95.57  E-value=0.081  Score=31.78  Aligned_cols=44  Identities=11%  Similarity=0.120  Sum_probs=37.3

Q ss_pred             EEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEe
Q psy17656         25 AHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYD   69 (85)
Q Consensus        25 ~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~   69 (85)
                      |+|.|+|++...+.+.+..+-.++++.+|+.-|| +.+.-.+...
T Consensus         2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l-~~~~~~v~~~   45 (70)
T smart00455        2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGL-NPECCVVRLR   45 (70)
T ss_pred             eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCC-CHHHEEEEEc
Confidence            8999999999999999999999999999999998 3444444443

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=95.56  E-value=0.1  Score=32.28  Aligned_cols=52  Identities=12%  Similarity=0.109  Sum_probs=43.3

Q ss_pred             EEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCee
Q psy17656         24 VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQC   76 (85)
Q Consensus        24 ~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~   76 (85)
                      .+++..=+ ....|.+.+...=++|.+.|.+.+++.+..-|-|.|.|..|.++
T Consensus         2 ~vK~~~~~-d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v   53 (82)
T cd06407           2 RVKATYGE-EKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWV   53 (82)
T ss_pred             EEEEEeCC-eEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeE
Confidence            46666644 47889999999999999999999999776899999999876543

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []

Probab=95.44  E-value=0.18  Score=30.24  Aligned_cols=52  Identities=12%  Similarity=0.201  Sum_probs=43.9

Q ss_pred             EEEEEEecCCC----EEEEEeccCccHhHHHHHHHhhcCC-cccceeeEE-EecCCCC
Q psy17656         23 EVAHITLLDGS----LLDVTIERKAKGEDLFDRVCDHLNL-LERDYFGLT-YDNKYDP   74 (85)
Q Consensus        23 ~~~~V~LLD~t----~~~~~v~~ka~G~~Ll~~Vc~~L~L-~E~dYFGL~-y~d~~~~   74 (85)
                      ..++|..-|++    ..++.|.+.++++++..++++.+++ .+...|.|. +....+.
T Consensus         3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~   60 (93)
T PF00788_consen    3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGE   60 (93)
T ss_dssp             EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTE
T ss_pred             eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCE
Confidence            46889999998    8999999999999999999999999 677899996 5444343

This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=95.43  E-value=0.071  Score=32.04  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=32.4

Q ss_pred             EEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCccc
Q psy17656         24 VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER   61 (85)
Q Consensus        24 ~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~   61 (85)
                      .|+|.|+|++...+.+.+..+-++.+..+|+.-+|.-.
T Consensus         2 ~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~   39 (71)
T PF02196_consen    2 TCRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPE   39 (71)
T ss_dssp             EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CC
T ss_pred             eEEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHH
Confidence            58999999999999999999999999999999888533

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

>smart00666 PB1 PB1 domain

Probab=94.41  E-value=0.36  Score=28.64  Aligned_cols=50  Identities=20%  Similarity=0.302  Sum_probs=41.6

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCC
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDP   74 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~   74 (85)
                      +.++|.. .+....+.+.+..+=.+|.+.|.+.+++.. .-|.|.|.|.+|.
T Consensus         2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~-~~~~l~Y~Dedgd   51 (81)
T smart00666        2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDN-QSFTLKYQDEDGD   51 (81)
T ss_pred             ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCC-CCeEEEEECCCCC
Confidence            4566776 566788999999999999999999999765 6689999997765

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=94.34  E-value=0.22  Score=28.90  Aligned_cols=48  Identities=13%  Similarity=0.329  Sum_probs=41.5

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN   70 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d   70 (85)
                      +.+.|...++....+.|.+.++=+.|++..|+..++....-|-|.|.+
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG   48 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDG   48 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETT
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECC
Confidence            467889999999999999999999999999999999886667777753

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=94.27  E-value=0.29  Score=29.26  Aligned_cols=49  Identities=27%  Similarity=0.314  Sum_probs=42.4

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEE
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT   67 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~   67 (85)
                      ......++|+++||+.+.-...+..+-++|++-|-.++...+...|-|.
T Consensus         3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~   51 (82)
T PF00789_consen    3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELI   51 (82)
T ss_dssp             TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEE
Confidence            3466899999999999999999999999999999988887776667774

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=93.56  E-value=0.47  Score=29.12  Aligned_cols=42  Identities=17%  Similarity=0.166  Sum_probs=39.0

Q ss_pred             CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ..+..+.+.|..++|..+.|.|.+.++=+.|+++.|++-++.
T Consensus         7 ~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~   48 (87)
T cd01763           7 EISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLS   48 (87)
T ss_pred             CCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCC
Confidence            466789999999999999999999999999999999999984

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=93.19  E-value=0.54  Score=29.57  Aligned_cols=51  Identities=12%  Similarity=0.148  Sum_probs=42.1

Q ss_pred             EEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc--cceeeEEEecCCCCee
Q psy17656         26 HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE--RDYFGLTYDNKYDPQC   76 (85)
Q Consensus        26 ~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E--~dYFGL~y~d~~~~~~   76 (85)
                      +..-+.|....|.+.+...=.+|...|.++|++..  ..-|.|.|.|.++.++
T Consensus         4 K~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~V   56 (86)
T cd06409           4 KFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIV   56 (86)
T ss_pred             EeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEE
Confidence            33455678888999988888999999999999875  4799999999877654

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14

Probab=92.39  E-value=0.4  Score=29.47  Aligned_cols=36  Identities=22%  Similarity=0.346  Sum_probs=33.4

Q ss_pred             EEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         24 VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        24 ~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      .|+|.|+||+...+.+.+..+=++++...|+.-||.
T Consensus         1 ~crV~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~   36 (73)
T cd01817           1 LCRVILPDGSTTVVPTRPGESIRDLLSGLCEKRGIN   36 (73)
T ss_pred             CcEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCC
Confidence            389999999999999999999999999999998885

RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=92.33  E-value=0.48  Score=27.43  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=33.6

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      +.+.|..++|....+.+.+..+-.+|.+++++..++.
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~   37 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP   37 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCC
Confidence            4678999999999999999999999999999998864

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01768 RA RA (Ras-associating) ubiquitin domain

Probab=92.27  E-value=1.1  Score=26.94  Aligned_cols=47  Identities=11%  Similarity=0.232  Sum_probs=39.8

Q ss_pred             EEEEecC---CCEEEEEeccCccHhHHHHHHHhhcCCc-ccceeeEEEecC
Q psy17656         25 AHITLLD---GSLLDVTIERKAKGEDLFDRVCDHLNLL-ERDYFGLTYDNK   71 (85)
Q Consensus        25 ~~V~LLD---~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~-E~dYFGL~y~d~   71 (85)
                      ++|..-|   ++..++.|.+.++.++++..+.+..++. ....|.|.=.-.
T Consensus         2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~   52 (87)
T cd01768           2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLG   52 (87)
T ss_pred             EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEEC
Confidence            4566666   8889999999999999999999999998 667888875543

The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=92.20  E-value=1.3  Score=27.89  Aligned_cols=47  Identities=11%  Similarity=0.111  Sum_probs=41.7

Q ss_pred             eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecC
Q psy17656         22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNK   71 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~   71 (85)
                      .+.++|+.-++ ...+.|.+...=++|.+.|.+.+++.  +.|.++|.|.
T Consensus         2 ~ikVKv~~~~D-v~~i~v~~~i~f~dL~~kIrdkf~~~--~~~~iKykDE   48 (86)
T cd06408           2 KIRVKVHAQDD-TRYIMIGPDTGFADFEDKIRDKFGFK--RRLKIKMKDD   48 (86)
T ss_pred             cEEEEEEecCc-EEEEEcCCCCCHHHHHHHHHHHhCCC--CceEEEEEcC
Confidence            36788887666 88889999999999999999999995  6999999998

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7

Probab=92.09  E-value=0.87  Score=28.69  Aligned_cols=45  Identities=13%  Similarity=0.267  Sum_probs=40.2

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEE
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT   67 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~   67 (85)
                      ..|+|.+.||+...+.|....++.++.++.++.-.+.......|-
T Consensus         3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~Lv   47 (85)
T cd01787           3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLV   47 (85)
T ss_pred             eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence            579999999999999999999999999999999888777766664

Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.

>smart00314 RA Ras association (RalGDS/AF-6) domain

Probab=91.70  E-value=1.1  Score=27.17  Aligned_cols=47  Identities=13%  Similarity=0.278  Sum_probs=38.9

Q ss_pred             EEEEEEecC---CCEEEEEeccCccHhHHHHHHHhhcCCcc-cceeeEEEe
Q psy17656         23 EVAHITLLD---GSLLDVTIERKAKGEDLFDRVCDHLNLLE-RDYFGLTYD   69 (85)
Q Consensus        23 ~~~~V~LLD---~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E-~dYFGL~y~   69 (85)
                      ..++|..-|   ++..++.|.+.++.++++.++.+..++.. ...|.|-=.
T Consensus         3 ~~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~   53 (90)
T smart00314        3 FVLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEV   53 (90)
T ss_pred             eEEEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEE
Confidence            356677666   88899999999999999999999999976 567777644

RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=91.44  E-value=0.71  Score=27.50  Aligned_cols=43  Identities=12%  Similarity=0.274  Sum_probs=29.4

Q ss_pred             EEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec
Q psy17656         27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN   70 (85)
Q Consensus        27 V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d   70 (85)
                      |...++....+.+.|.+.=.++++++|++.++... -++|.|.+
T Consensus         1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~-~~~L~h~~   43 (65)
T PF11470_consen    1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPS-SYDLKHNN   43 (65)
T ss_dssp             EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--GG-G-EEEETT
T ss_pred             CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCcc-ceEEEECC
Confidence            34567888999999999999999999999998654 66888754

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=91.40  E-value=1.7  Score=25.67  Aligned_cols=51  Identities=14%  Similarity=0.209  Sum_probs=42.8

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCC
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDP   74 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~   74 (85)
                      +.+++..-++....+.+.+...=.+|.+.|.+.+++. ..-|.|.|.|.+|.
T Consensus         2 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~-~~~~~l~Y~D~dgD   52 (84)
T PF00564_consen    2 VRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLL-DEDFQLKYKDEDGD   52 (84)
T ss_dssp             EEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTS-TSSEEEEEEETTSS
T ss_pred             EEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCC-CccEEEEeeCCCCC
Confidence            5677777776556688999899999999999999988 67799999998773

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=91.17  E-value=1.7  Score=27.14  Aligned_cols=50  Identities=10%  Similarity=0.076  Sum_probs=39.9

Q ss_pred             EEEEEecCCCEEEEEecc--CccHhHHHHHHHhhcCCcccceeeEEEecCCCCeec
Q psy17656         24 VAHITLLDGSLLDVTIER--KAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCW   77 (85)
Q Consensus        24 ~~~V~LLD~t~~~~~v~~--ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~W   77 (85)
                      .+++.. .|....|.+++  ...=.+|...|-..++|.   -|.|.|.|.++.++=
T Consensus         2 ~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~---~f~lKYlDde~e~v~   53 (81)
T cd06396           2 NLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN---DIQIKYVDEENEEVS   53 (81)
T ss_pred             EEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC---cceeEEEcCCCCEEE
Confidence            345555 44578889988  557899999999999998   999999998887553

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=90.55  E-value=1.4  Score=25.13  Aligned_cols=45  Identities=18%  Similarity=0.268  Sum_probs=37.2

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      +.+.|..++|....+.+++..+-.+|-+++.+..++ ..+..-|.|
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi-~~~~q~L~~   45 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGI-PVEQQRLIY   45 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCc-CHHHeEEEE
Confidence            467889999999999999999999999999999887 334445555

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor

Probab=90.46  E-value=0.77  Score=28.51  Aligned_cols=44  Identities=18%  Similarity=0.289  Sum_probs=37.5

Q ss_pred             EEEecCCCEEEEEeccCccHhHHHHHHHhhcCCccc-ceeeEEEe
Q psy17656         26 HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER-DYFGLTYD   69 (85)
Q Consensus        26 ~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~-dYFGL~y~   69 (85)
                      .|.++||....+.|.+.-+..++|+.+|..=+|--. .|.-|.+.
T Consensus         3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~   47 (77)
T cd01818           3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFL   47 (77)
T ss_pred             EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEE
Confidence            588999999999999999999999999999998644 45556655

Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.

>KOG3784|consensus

Probab=89.69  E-value=0.87  Score=35.96  Aligned_cols=50  Identities=20%  Similarity=0.333  Sum_probs=43.7

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCccc--ceeeEEEec
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER--DYFGLTYDN   70 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~--dYFGL~y~d   70 (85)
                      ......|.++||+..++.+..+.+...+|..||..|++...  -||||.-+.
T Consensus       106 ~~v~l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l~~e~i~~f~lFlvr  157 (407)
T KOG3784|consen  106 EEVELDVFLPNGEKITINCLVSDTASLVLKSVCRKLGLPDELIGYFGLFLVR  157 (407)
T ss_pred             ceeEEEEEccCCceEEEEEEecccHHHHHHHHHhhcCCchHhhhheeeeEEe
Confidence            45677888999999999999999999999999999999732  599998764

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=89.49  E-value=2.9  Score=26.33  Aligned_cols=51  Identities=18%  Similarity=0.247  Sum_probs=40.3

Q ss_pred             EEEEecCCCEEEEEecc-----CccHhHHHHHHHhhcCCcccceeeEEEecCCCCee
Q psy17656         25 AHITLLDGSLLDVTIER-----KAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQC   76 (85)
Q Consensus        25 ~~V~LLD~t~~~~~v~~-----ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~   76 (85)
                      ++|.. +|....|.++.     ...-..|.+.|.+.++|..-.-|-|.|.|.+|...
T Consensus         3 vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V   58 (91)
T cd06398           3 VKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVV   58 (91)
T ss_pred             EEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEE
Confidence            45555 45566777774     57899999999999999887899999999877543

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>smart00213 UBQ Ubiquitin homologues

Probab=89.46  E-value=1.9  Score=23.71  Aligned_cols=45  Identities=11%  Similarity=0.211  Sum_probs=35.8

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEe
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYD   69 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~   69 (85)
                      +.+.|..++ ....+.+.+..+..+|..++++..++. .+.+-|.|.
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~-~~~~~L~~~   45 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIP-VEQQRLIYK   45 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCC-HHHEEEEEC
Confidence            357888888 688999999999999999999999974 334555443

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=88.94  E-value=2.3  Score=26.66  Aligned_cols=48  Identities=19%  Similarity=0.205  Sum_probs=35.3

Q ss_pred             EEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCC
Q psy17656         25 AHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDP   74 (85)
Q Consensus        25 ~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~   74 (85)
                      .+|...++ ...|.++..-.=..|.+.++...+|.+-. ||+.|.|++|-
T Consensus         3 fKv~~~g~-~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~-~~vtYiDeD~D   50 (82)
T cd06397           3 FKSSFLGD-TRRIVFPDIPTWEALASKLENLYNLPEIK-VGVTYIDNDND   50 (82)
T ss_pred             EEEEeCCc-eEEEecCCCccHHHHHHHHHHHhCCChhH-eEEEEEcCCCC
Confidence            35555554 44555555556677899999999999876 99999998754

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=88.49  E-value=1.6  Score=25.60  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=34.2

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE   60 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E   60 (85)
                      +.+.|..++|....++|.+..+-.+|-+++++.-|+..
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~   38 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPE   38 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH
Confidence            46788999999999999999999999999999998754

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=86.99  E-value=4.4  Score=23.67  Aligned_cols=47  Identities=17%  Similarity=0.249  Sum_probs=38.1

Q ss_pred             EEEEecCCCEEEEEec-cCccHhHHHHHHHhhcCCcccceeeEEEecCCC
Q psy17656         25 AHITLLDGSLLDVTIE-RKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYD   73 (85)
Q Consensus        25 ~~V~LLD~t~~~~~v~-~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~   73 (85)
                      +++..-+ ....+.+. ....=.+|.+.|++.+++.. .-|.+.|.|.+|
T Consensus         3 vK~~~~~-~~~~~~~~~~~~s~~~L~~~i~~~~~~~~-~~~~l~y~D~e~   50 (81)
T cd05992           3 VKVKYGG-EIRRFVVVSRSISFEDLRSKIAEKFGLDA-VSFKLKYPDEDG   50 (81)
T ss_pred             EEEEecC-CCEEEEEecCCCCHHHHHHHHHHHhCCCC-CcEEEEeeCCCC
Confidence            4555554 46777777 88889999999999999876 778999999877

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=86.60  E-value=2.7  Score=24.47  Aligned_cols=36  Identities=6%  Similarity=0.117  Sum_probs=32.8

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCC
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNL   58 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L   58 (85)
                      |.+.|..++|..+.+++++..+-.+|-+++++..++
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i   36 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGC   36 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCC
Confidence            467888999999999999999999999999999887

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=86.47  E-value=2.1  Score=26.22  Aligned_cols=40  Identities=13%  Similarity=0.314  Sum_probs=28.9

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCccc
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER   61 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~   61 (85)
                      +.+-++|+..|| ...+++++.++-.+|++.|.+.+++...
T Consensus         3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~   42 (80)
T PF11543_consen    3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDS   42 (80)
T ss_dssp             ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TT
T ss_pred             ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCc
Confidence            457899999999 6677899999999999999999998654

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>PTZ00044 ubiquitin; Provisional

Probab=86.40  E-value=2.7  Score=24.45  Aligned_cols=37  Identities=11%  Similarity=0.021  Sum_probs=33.5

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      +.+.|..++|....+.+++..+-.+|-.++++..++.
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~   37 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGID   37 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence            3578899999999999999999999999999999974

>cd01803 Ubiquitin Ubiquitin

Probab=86.34  E-value=2.6  Score=24.23  Aligned_cols=37  Identities=14%  Similarity=0.213  Sum_probs=33.3

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      |.+.|..++|..+.+++++..+-.+|-.++.+..++.
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~   37 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   37 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCC
Confidence            3578899999999999999999999999999998874

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=86.28  E-value=3.1  Score=24.83  Aligned_cols=36  Identities=11%  Similarity=0.234  Sum_probs=33.4

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCC
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNL   58 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L   58 (85)
                      +.+.|..+.|..+.+++++.++-.+|-+++.+..++
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i   38 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGV   38 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCC
Confidence            688999999999999999999999999999998886

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=85.99  E-value=5  Score=23.91  Aligned_cols=47  Identities=23%  Similarity=0.175  Sum_probs=36.2

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      ..-.+.|+++||+.+.-.+....+=++|++-|....+ .+..-|-|.-
T Consensus         3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~-~~~~~f~L~t   49 (80)
T smart00166        3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALT-DGNDPFTLNS   49 (80)
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHccc-CCCCCEEEEe
Confidence            5578999999999999999999998999999955443 3334466643

Present in FAF1 and Shp1p.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=85.82  E-value=5.1  Score=24.28  Aligned_cols=47  Identities=19%  Similarity=0.169  Sum_probs=38.9

Q ss_pred             eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      .-.+.|+|+||+.+.-.+....+=++|++-|-.+.+-.+..-|.|..
T Consensus         4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t   50 (79)
T cd01770           4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMT   50 (79)
T ss_pred             eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEec
Confidence            46789999999999999999999899999999877644556778864

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd00196 UBQ Ubiquitin-like proteins

Probab=85.02  E-value=3.4  Score=20.92  Aligned_cols=43  Identities=19%  Similarity=0.318  Sum_probs=33.7

Q ss_pred             EEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec
Q psy17656         27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN   70 (85)
Q Consensus        27 V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d   70 (85)
                      |.+.+++...+.+.+..+-.++++.+++..+ ...+.|-|.+..
T Consensus         2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~-~~~~~~~l~~~~   44 (69)
T cd00196           2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLG-LPPEQQRLLVNG   44 (69)
T ss_pred             eEecCCCEEEEEcCCCCcHHHHHHHHHHHHC-cChHHeEEEECC
Confidence            4555888999999999999999999999988 444555665543

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=84.12  E-value=4.8  Score=24.02  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=33.2

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCC
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNL   58 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L   58 (85)
                      +.+.|..+.|...++++++.++-.+|-+++.+..++
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~   37 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKV   37 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCC
Confidence            678899999999999999999999999999988876

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=83.50  E-value=7.6  Score=24.16  Aligned_cols=47  Identities=15%  Similarity=0.287  Sum_probs=38.3

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCC
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKY   72 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~   72 (85)
                      ..++|+.=+  .+.+.+.+...=++|+++|++.|.|. .+--=|+|.+..
T Consensus         3 ~vvKV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~-~e~i~LsYkde~   49 (80)
T cd06406           3 YVVKVHFKY--TVAIQVARGLSYATLLQKISSKLELP-AEHITLSYKSEA   49 (80)
T ss_pred             eEEEEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCC-chhcEEEeccCC
Confidence            567788765  77888999999999999999999996 333678898854

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=83.19  E-value=6.8  Score=23.10  Aligned_cols=44  Identities=25%  Similarity=0.184  Sum_probs=35.2

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      -.++|+|+||+.+.-.....++=++|++-|-.+..-  ..-|.|..
T Consensus         3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~--~~~f~L~t   46 (77)
T cd01767           3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP--AEPFTLMT   46 (77)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC--CCCEEEEe
Confidence            468999999999999999999999999999766543  44466653

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>KOG3531|consensus

Probab=82.62  E-value=0.073  Score=45.50  Aligned_cols=64  Identities=6%  Similarity=-0.279  Sum_probs=52.4

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec-CCCCeeccccCCC
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN-KYDPQCWLEMVNY   83 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d-~~~~~~WLd~~K~   83 (85)
                      -++--.+.+..++.++ .+-+++.+.|+.+|..+|..+++++.+|||++|.- .-..+.|+|.+++
T Consensus       174 ~~d~~~l~~~~~~p~q-~~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~  238 (1036)
T KOG3531|consen  174 YLDREHLAHTRYLPNQ-DELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDREGT  238 (1036)
T ss_pred             cccceeeeeeecCchH-HHHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcccc
Confidence            3444577888888877 77778889999999999999999999999999864 3356689998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	85
3bin_A	283	Structure Of The Dal-1 And Tslc1 (372-383) Complex		2e-11
2he7_A	283	Ferm Domain Of Epb41l3 (Dal-1) Length = 283		2e-11
1gg3_A	279	Crystal Structure Of The Protein 4.1r Membrane Bind		7e-10
3qij_A	296	Primitive-Monoclinic Crystal Structure Of The Ferm		7e-10
1h4r_B	314	Crystal Structure Of The Ferm Domain Of Merlin, The		4e-04
1h4r_A	314	Crystal Structure Of The Ferm Domain Of Merlin, The		4e-04
3u8z_A	300	Human Merlin Ferm Domain Length = 300		4e-04
1isn_A	323	Crystal Structure Of Merlin Ferm Domain Length = 32		4e-04

>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex Length = 283

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
          + LLDGS     +E++++G+ LFD+VC+HLNLLE+DYFGLTY +  + + WL+
Sbjct: 7  VILLDGSEYTCDVEKRSRGQVLFDKVCEHLNLLEKDYFGLTYRDAENQKNWLD 59

>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1) Length = 283

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
          + LLDGS     +E++++G+ LFD+VC+HLNLLE+DYFGLTY +  + + WL+
Sbjct: 7  VILLDGSEYTCDVEKRSRGQVLFDKVCEHLNLLEKDYFGLTYRDAENQKNWLD 59

>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding Domain Length = 279

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
          ++LLD ++ +  +E+ AKG+DL  RVC+HLNLLE DYFGL   +    + WL+
Sbjct: 5  VSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLD 57

>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain Of Protein 4.1r Length = 296

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
          ++LLD ++ +  +E+ AKG+DL  RVC+HLNLLE DYFGL   +    + WL+
Sbjct: 22 VSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLD 74

>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 35 LDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
          ++   E K KG+DLFD VC  L L E  +FGL Y  K D   WL+M
Sbjct: 34 MEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIK-DTVAWLKM 78

>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 35 LDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
          ++   E K KG+DLFD VC  L L E  +FGL Y  K D   WL+M
Sbjct: 34 MEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIK-DTVAWLKM 78

>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain Length = 300

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 11 APPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN 70
           P  ++P   K     I  +D  + +   E K KG+DLFD VC  L L E  +FGL Y  
Sbjct: 1  GPLGSQP---KTFTVRIVTMDAEM-EFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTI 56
Query: 71 KYDPQCWLEM 80
          K D   WL+M
Sbjct: 57 K-DTVAWLKM 65

>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain Length = 323

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 25 AHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
            I  +D  + +   E K KG+DLFD VC  L L E  +FGL Y  K D   WL+M
Sbjct: 7  VRIVTMDAEM-EFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIK-DTVAWLKM 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	85
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	5e-19
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	2e-16
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	9e-15
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	5e-14
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	2e-13
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	6e-08
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	1e-07
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	4e-06

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Length = 296

 Score = 77.3 bits (190), Expect = 5e-19
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query: 26 HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
           ++LLD ++ +  +E+ AKG+DL  RVC+HLNLLE DYFGL   +    + WL+ 
Sbjct: 21 KVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDS 75

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Length = 294

 Score = 70.4 bits (172), Expect = 2e-16
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 26 HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
           +T +D  L +  I+    G+ LFD+V   + L E  +FGL Y +      WL++
Sbjct: 5  RVTTMDAEL-EFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKL 58

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575

 Score = 66.5 bits (161), Expect = 9e-15
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 13 PKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKY 72
          PK+  ++       +T +D  L +  I++   G+ LFD+V   + L E  +FGL Y +  
Sbjct: 2  PKSMNVR-------VTTMDAEL-EFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSK 53

Query: 73 DPQCWLEM 80
              W+++
Sbjct: 54 GDLTWIKL 61

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Length = 314

 Score = 63.8 bits (155), Expect = 5e-14
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 8  TESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT 67
          + S+  + +P   K     I  +D  + +   E K KG+DLFD VC  L L E  +FGL 
Sbjct: 11 SFSSLKRKQP---KTFTVRIVTMDAEM-EFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQ 66

Query: 68 YDNKYDPQCWLEM 80
          Y    D   WL+M
Sbjct: 67 YT-IKDTVAWLKM 78

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Length = 371

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 12  PPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY--- 68
              T   + K     I +LDG++  + ++      D+   +C  + +   D + L     
Sbjct: 75  NGDTMEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELM 134

Query: 69  -DNKYDPQCWLEM 80
            + K D   WL+ 
Sbjct: 135 EEKKDDELNWLDH 147

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} Length = 322

 Score = 46.9 bits (111), Expect = 6e-08
 Identities = 8/63 (12%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 11 APPKTKPLKGKIEVAHITLLDGSL--LDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68
            P+ + ++       I  +DGS   +++        + + + +   L+   + YF +  
Sbjct: 1  GSPEFEKVR-------IYRMDGSYRSVELKHGNNTTVQQIMEGM--RLSQETQQYFTIWI 51

Query: 69 DNK 71
           ++
Sbjct: 52 CSE 54

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Length = 655

 Score = 46.5 bits (109), Expect = 1e-07
 Identities = 9/54 (16%), Positives = 20/54 (37%)

Query: 26  HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
            +T +DG+   +  +      +L + + D ++L +R  F L             
Sbjct: 267 PVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFDKVSSLGS 320

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Length = 555

 Score = 42.2 bits (98), Expect = 4e-06
 Identities = 5/53 (9%), Positives = 17/53 (32%)

Query: 27  ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
           +    G    +TI       ++ +++   L + +       ++        +E
Sbjct: 221 VYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIE 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	85
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	99.68
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	99.62
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	99.6
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	99.55
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	99.45
2al6_A	375	Focal adhesion kinase 1; transferase; 2.35A {Gallu	99.22
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.18
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	99.11
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	99.09
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	98.43
4eku_A	392	Protein-tyrosine kinase 2-beta; proline-rich tyros	98.23
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.75
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.07
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	96.03
1wgr_A	100	Growth factor receptor-bound protein 7; RA domain,	94.92
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	94.29
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	94.06
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	94.03
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	94.0
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	93.69
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	93.6
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	93.41
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	93.32
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	93.15
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	92.91
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	92.87
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	92.84
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	92.74
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	92.73
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	92.25
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	91.99
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	91.93
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	91.9
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	91.77
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	91.6
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	91.59
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	91.56
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	91.56
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	91.44
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	91.25
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	91.22
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	90.94
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	90.7
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	90.34
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	90.04
1wgy_A	104	RAP guanine nucleotide exchange factor 5; ubiquiti	89.45
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	89.42
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	89.36
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	89.23
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	88.96
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	88.73
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	88.22
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	88.16
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	88.0
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	87.97
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	87.88
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	87.77
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	87.39
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	87.31
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	87.1
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	86.83
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	86.49
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	86.31
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	86.24
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	85.61
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	84.92
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	84.02
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	83.88
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	83.5
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	82.39
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	81.89
2dhz_A	120	RAP guanine nucleotide exchange factor (GEF)- like	81.87
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	81.68
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	81.36
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	81.02
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	80.27

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A

Probab=99.68  E-value=3.9e-17  Score=118.99  Aligned_cols=65  Identities=38%  Similarity=0.709  Sum_probs=60.0

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY   83 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~   83 (85)
                      ..+.+.|+|.+|||+..++.|+++++|++|++.||++|||.|.+||||+|.+.+++.+|||++|+
T Consensus        14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~   78 (296)
T 3qij_A           14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKE   78 (296)
T ss_dssp             ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSB
T ss_pred             CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchh
Confidence            45778999999999999999999999999999999999999999999999998899999999874

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=99.62  E-value=6.7e-16  Score=112.20  Aligned_cols=65  Identities=37%  Similarity=0.556  Sum_probs=58.2

Q ss_pred             CCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656         17 PLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY   83 (85)
Q Consensus        17 ~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~   83 (85)
                      +++++.+.|+|.++|| ++++.++++++|++|++.||++|||.|.+||||.|. .+++.+|||++|+
T Consensus        17 ~~~~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~~~wL~~~~~   81 (314)
T 1h4r_A           17 RKQPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKK   81 (314)
T ss_dssp             ----CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTEEEECCTTSB
T ss_pred             CCCCCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE-eCCcCeeCCCccC
Confidence            3467999999999999 788999999999999999999999999999999999 7789999999875

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=99.60  E-value=2.2e-15  Score=108.30  Aligned_cols=61  Identities=28%  Similarity=0.530  Sum_probs=57.4

Q ss_pred             eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656         22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY   83 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~   83 (85)
                      .+.|+|.++|| +.++.++++++|++|++.||++|||.|.+||||.|.+.++..+|||++++
T Consensus         1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~   61 (294)
T 1ef1_A            1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK   61 (294)
T ss_dssp             CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSB
T ss_pred             CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccC
Confidence            37899999999 67899999999999999999999999999999999999999999999875

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=99.55  E-value=9.3e-15  Score=115.27  Aligned_cols=63  Identities=27%  Similarity=0.523  Sum_probs=59.0

Q ss_pred             CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656         20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY   83 (85)
Q Consensus        20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~   83 (85)
                      ++.+.|+|.++|| +++|.|+++++|++||+.||.+|||.|.+||||.|.+.++..+|||++++
T Consensus         2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~   64 (575)
T 2i1j_A            2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKK   64 (575)
T ss_dssp             -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSB
T ss_pred             CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhcccc
Confidence            5789999999999 67899999999999999999999999999999999999999999999875

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=99.45  E-value=1.1e-13  Score=102.75  Aligned_cols=65  Identities=18%  Similarity=0.394  Sum_probs=55.3

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecC----CCCeeccccCCC
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNK----YDPQCWLEMVNY   83 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~----~~~~~WLd~~K~   83 (85)
                      ..+.+.|+|.|+||+...+.++++++|+++++.||++|||.|.+||||.+.+.    ++...||+++|+
T Consensus        82 ~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~  150 (371)
T 3ivf_A           82 RKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRT  150 (371)
T ss_dssp             EECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSB
T ss_pred             cCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCch
Confidence            34678999999999999999999999999999999999999999999999874    578899999875

>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A

Probab=99.22  E-value=1.8e-11  Score=91.47  Aligned_cols=63  Identities=11%  Similarity=0.149  Sum_probs=57.3

Q ss_pred             CeEEEEEEecCCC----EEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecC-CCCeeccccCCC
Q psy17656         21 KIEVAHITLLDGS----LLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNK-YDPQCWLEMVNY   83 (85)
Q Consensus        21 ~~~~~~V~LLD~t----~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~-~~~~~WLd~~K~   83 (85)
                      ....|+|.|+||+    ...|.+++.++|++|++.||++|+|.|.+||||++.+. .++.+||+++++
T Consensus         6 ~~~~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~   73 (375)
T 2al6_A            6 VLKVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMG   73 (375)
T ss_dssp             EEEEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSB
T ss_pred             ccceEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccc
Confidence            4567789999998    99999999999999999999999999999999999875 578899999874

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.18  E-value=2.4e-11  Score=95.66  Aligned_cols=61  Identities=11%  Similarity=0.147  Sum_probs=56.6

Q ss_pred             EEEEEEecCCC----EEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecC-CCCeeccccCCC
Q psy17656         23 EVAHITLLDGS----LLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNK-YDPQCWLEMVNY   83 (85)
Q Consensus        23 ~~~~V~LLD~t----~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~-~~~~~WLd~~K~   83 (85)
                      -.|.|.+.|+.    ...+.+..++++++|++.||++|+|.|.+||||+|.+. .++.+||+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~   73 (656)
T 2j0j_A            8 KVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMG   73 (656)
T ss_dssp             EEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSB
T ss_pred             hheEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCc
Confidence            46779999988    99999999999999999999999999999999999987 699999999875

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A

Probab=99.11  E-value=2.3e-10  Score=88.79  Aligned_cols=62  Identities=15%  Similarity=0.174  Sum_probs=55.0

Q ss_pred             CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc-cceeeEEEecCCCCeeccccCC
Q psy17656         20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE-RDYFGLTYDNKYDPQCWLEMVN   82 (85)
Q Consensus        20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E-~dYFGL~y~d~~~~~~WLd~~K   82 (85)
                      ++.+.|+|.++||+...+.+++.++|++|++.||++|||.| .+||||.+.+ .+..+||++++
T Consensus       214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~-~~~~~~L~~~~  276 (555)
T 3au4_A          214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYN-GHVDKAIESRT  276 (555)
T ss_dssp             TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEES-SSCEEECCTTS
T ss_pred             CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEe-CCeeEecCCCC
Confidence            56799999999999999999999999999999999999998 8999998765 45667887764

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=99.09  E-value=1.7e-10  Score=92.14  Aligned_cols=54  Identities=19%  Similarity=0.240  Sum_probs=50.2

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCC
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKY   72 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~   72 (85)
                      .++.+.|+|.++||+..+|.|++.++|+++++.||++|||.|.+||||.|.+.+
T Consensus       260 ~~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~~~~d  313 (655)
T 3pvl_A          260 SKKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFD  313 (655)
T ss_dssp             HTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEEEETT
T ss_pred             cCCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEEecCC
Confidence            346789999999999999999999999999999999999999999999998654

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A

Probab=98.43  E-value=9.9e-08  Score=69.62  Aligned_cols=49  Identities=18%  Similarity=0.297  Sum_probs=42.6

Q ss_pred             eEEEEEEecCCCEEEEEecc--CccHhHHHHHHHhhcCCc--ccceeeEEEecCCCC
Q psy17656         22 IEVAHITLLDGSLLDVTIER--KAKGEDLFDRVCDHLNLL--ERDYFGLTYDNKYDP   74 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~~--ka~G~~Ll~~Vc~~L~L~--E~dYFGL~y~d~~~~   74 (85)
                      .+.|+|.++||+...++|+.  .++|+++    |++|+|.  +.+||||.+.++..+
T Consensus         5 ~~~i~V~l~dg~~~~~~i~~~~~tt~~el----~e~lgL~~~~~~~FaL~~~~~~~e   57 (322)
T 4dxa_B            5 FEKVRIYRMDGSYRSVELKHGNNTTVQQI----MEGMRLSQETQQYFTIWICSENLS   57 (322)
T ss_dssp             CCEEEEECTTSCEEEEECTTGGGCCHHHH----HTTSSCCTTGGGGEEEEEECSSCE
T ss_pred             ceEEEEEEECCcEEEEEEcCCCCCcHHHH----HHHhCcCccccCeeEEEEECCccc
Confidence            46899999999999999999  9999999    5678886  789999999986543

>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}

Probab=98.23  E-value=2.8e-06  Score=64.27  Aligned_cols=65  Identities=12%  Similarity=0.221  Sum_probs=55.2

Q ss_pred             CCCeEEEEEEe------cCCCEEEEEeccCccHhHHHHHHH--hhcCC--cccceeeEEEec-CCCCeeccccCCC
Q psy17656         19 KGKIEVAHITL------LDGSLLDVTIERKAKGEDLFDRVC--DHLNL--LERDYFGLTYDN-KYDPQCWLEMVNY   83 (85)
Q Consensus        19 ~~~~~~~~V~L------LD~t~~~~~v~~ka~G~~Ll~~Vc--~~L~L--~E~dYFGL~y~d-~~~~~~WLd~~K~   83 (85)
                      .......+|..      |||+...+.++..++.+++++.||  ..+|+  .+.+||||++.+ ..++.+||+++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~   93 (392)
T 4eku_A           18 KEDVRILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMT   93 (392)
T ss_dssp             GGGEEEEEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSB
T ss_pred             cceeeeEEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCc
Confidence            34556777788      999999999999999999999999  56764  799999999975 5678899999875

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.75  E-value=0.00017  Score=47.53  Aligned_cols=51  Identities=16%  Similarity=0.431  Sum_probs=43.5

Q ss_pred             CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec
Q psy17656         20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN   70 (85)
Q Consensus        20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d   70 (85)
                      ++....+|.+|||+..++.|+...+-..+...||+.+||...+-|+|....
T Consensus         9 ~k~r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~   59 (128)
T 2kc2_A            9 SHMRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVREL   59 (128)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEEC
T ss_pred             cCCccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccc
Confidence            355689999999999999999999988888899999999855547998754

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.07  E-value=0.048  Score=33.61  Aligned_cols=55  Identities=13%  Similarity=0.117  Sum_probs=48.5

Q ss_pred             CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCe
Q psy17656         20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQ   75 (85)
Q Consensus        20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~   75 (85)
                      +..+.+++.+-++ .+.+.+++...=++|.+.|.+.+.+...+-|.+.|.|..|..
T Consensus         4 ~~~vkvK~~~~gd-i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~   58 (89)
T 1vd2_A            4 GSQVRVKAYYRGD-IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDP   58 (89)
T ss_dssp             SSCEEEEEESSSC-EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCC
T ss_pred             CCeEEEEEEeCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCc
Confidence            4568999999876 778999999999999999999999998999999999987643

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.03  E-value=0.0098  Score=36.98  Aligned_cols=49  Identities=8%  Similarity=0.204  Sum_probs=42.3

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN   70 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d   70 (85)
                      .-+.+.|...++....+.|.+.+.=.++++.+|+++++ +.+-++|.|.+
T Consensus         8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl-~~~~~~Lkh~~   56 (90)
T 2al3_A            8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDF-NPSEYDLKFQR   56 (90)
T ss_dssp             --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTC-CGGGCEEEETT
T ss_pred             CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCC-ChhhCeEEeCC
Confidence            34589999999999999999999999999999999999 56666999864

>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=94.92  E-value=0.096  Score=32.89  Aligned_cols=49  Identities=18%  Similarity=0.330  Sum_probs=42.9

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEE
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT   67 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~   67 (85)
                      ..+...|+|...||+...+.|++..+++++.+..++..++.....+.|-
T Consensus         6 ~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLv   54 (100)
T 1wgr_A            6 SGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLV   54 (100)
T ss_dssp             CCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEE
T ss_pred             cCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEE
Confidence            3455799999999999999999999999999999999998877666654

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=94.29  E-value=0.24  Score=28.58  Aligned_cols=42  Identities=21%  Similarity=0.286  Sum_probs=38.3

Q ss_pred             CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      .....+.+.|..++|..+.+.+.+.++-.+|-.++++..++.
T Consensus         8 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip   49 (88)
T 3dbh_I            8 GSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP   49 (88)
T ss_dssp             SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred             CCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence            456779999999999999999999999999999999999875

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=94.06  E-value=0.28  Score=30.92  Aligned_cols=45  Identities=13%  Similarity=0.209  Sum_probs=39.8

Q ss_pred             CCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656         16 KPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE   60 (85)
Q Consensus        16 ~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E   60 (85)
                      +...+..+.++|...++..+.|.|.+.++=+.|++..|+..++.-
T Consensus        20 ~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~   64 (110)
T 2k8h_A           20 CKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISR   64 (110)
T ss_dssp             CCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCS
T ss_pred             CCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence            344567799999999999999999999999999999999999853

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=94.03  E-value=0.22  Score=29.34  Aligned_cols=42  Identities=12%  Similarity=0.176  Sum_probs=38.2

Q ss_pred             CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ..+..+.+.|..++|..+.+.+.+.++-.+|-.++++..++.
T Consensus        13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip   54 (91)
T 3v6c_B           13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP   54 (91)
T ss_dssp             CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred             CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC
Confidence            356779999999999999999999999999999999999874

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=94.00  E-value=0.33  Score=30.18  Aligned_cols=42  Identities=19%  Similarity=0.276  Sum_probs=38.4

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE   60 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E   60 (85)
                      ....+.++|...++..+.|.|.+.++=..|++..|++.++.-
T Consensus        21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~   62 (104)
T 1wz0_A           21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM   62 (104)
T ss_dssp             CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCT
T ss_pred             CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCc
Confidence            456799999999999999999999999999999999999853

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=93.69  E-value=0.27  Score=28.80  Aligned_cols=43  Identities=7%  Similarity=0.089  Sum_probs=38.1

Q ss_pred             CCCeEEEEEEecCCC-EEEEEeccCccHhHHHHHHHhhcCCccc
Q psy17656         19 KGKIEVAHITLLDGS-LLDVTIERKAKGEDLFDRVCDHLNLLER   61 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t-~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~   61 (85)
                      .+..+.++|...+|. .+.|.|.+.++=+.|++..|+..++.-.
T Consensus         4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~   47 (79)
T 3a4r_A            4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGH   47 (79)
T ss_dssp             CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTC
T ss_pred             CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcc
Confidence            446699999999996 8999999999999999999999998643

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=93.60  E-value=0.18  Score=30.82  Aligned_cols=45  Identities=13%  Similarity=0.082  Sum_probs=37.3

Q ss_pred             CCCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         15 TKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        15 ~~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      +.+..+..+.+.|..++|..+.+.|.+..+-.+|-.++++..++.
T Consensus        16 ~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip   60 (106)
T 1ttn_A           16 PPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE   60 (106)
T ss_dssp             -----CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC
T ss_pred             CCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC
Confidence            445677889999999999999999999999999999999998874

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=93.41  E-value=0.2  Score=28.67  Aligned_cols=38  Identities=21%  Similarity=0.309  Sum_probs=35.1

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE   60 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E   60 (85)
                      +.++|...+|..+.|.|.+.++=+.|++..|+..++.-
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~   39 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM   39 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCT
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence            67899999999999999999999999999999999853

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=93.32  E-value=0.22  Score=29.95  Aligned_cols=43  Identities=12%  Similarity=0.154  Sum_probs=37.4

Q ss_pred             CCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         17 PLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        17 ~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ...+..+.+.|..++|..+.+.|.+..+=..|.+.+++..++.
T Consensus        16 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip   58 (97)
T 1wyw_B           16 KKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP   58 (97)
T ss_dssp             ---CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred             CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence            3456779999999999999999999999999999999999984

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=93.15  E-value=0.34  Score=30.35  Aligned_cols=43  Identities=7%  Similarity=-0.041  Sum_probs=38.6

Q ss_pred             CCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         16 KPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        16 ~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ....+..+.++|.. +|.++.|.|.+.++=+.|++..|+..++.
T Consensus        25 ~~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~   67 (106)
T 2eke_C           25 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE   67 (106)
T ss_dssp             CCCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred             CCCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC
Confidence            34466789999999 99999999999999999999999999985

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=92.91  E-value=0.3  Score=29.51  Aligned_cols=42  Identities=19%  Similarity=0.276  Sum_probs=38.1

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE   60 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E   60 (85)
                      ....+.++|...+|..+.|.|.+.++=+.|++..|++.++.-
T Consensus        14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~   55 (93)
T 2d07_B           14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM   55 (93)
T ss_dssp             -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCG
T ss_pred             CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCc
Confidence            457899999999999999999999999999999999999853

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=92.87  E-value=0.24  Score=34.45  Aligned_cols=65  Identities=12%  Similarity=0.119  Sum_probs=40.3

Q ss_pred             ccccccccCCCCCCCC-CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656          2 TMTEIDTESAPPKTKP-LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus         2 ~~~~~~~~~~~~~~~~-~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      +-.|+.+++.+-++|. .++..+.++|. .+|.++.|.|.+.++=..|++..|++.|+.- .-+-+.|
T Consensus         8 ~~~~~~~~~~~~~kp~~~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~-~~~RF~F   73 (200)
T 3pge_A            8 SDSEVNQEAKPEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLRFLY   73 (200)
T ss_dssp             -----------------CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCG-GGEEEEE
T ss_pred             chhhhccccccccCCCCCCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCCh-hhEEEEE
Confidence            3345666666655543 56788999997 4999999999999999999999999999843 3333444

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=92.84  E-value=0.32  Score=27.67  Aligned_cols=39  Identities=13%  Similarity=0.184  Sum_probs=35.4

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ..+.+.|..+++..+.+++.+.++-.+|-+++++..++.
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~   40 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   40 (85)
T ss_dssp             -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred             CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence            358899999999999999999999999999999999974

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=92.74  E-value=0.27  Score=29.86  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=37.0

Q ss_pred             CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656         20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE   60 (85)
Q Consensus        20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E   60 (85)
                      +..+.++|..+++.++.|.|.+.++=+.|++..|++.++.-
T Consensus         5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~   45 (94)
T 2io1_B            5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM   45 (94)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred             CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc
Confidence            35689999999999999999999999999999999999853

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=92.73  E-value=0.3  Score=29.60  Aligned_cols=40  Identities=20%  Similarity=0.280  Sum_probs=36.8

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE   60 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E   60 (85)
                      ..+.++|...+|.++.|.|.+.++=+.|++..|+..++.-
T Consensus         4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~   43 (91)
T 2io0_B            4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM   43 (91)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence            4689999999999999999999999999999999999854

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=92.25  E-value=0.24  Score=37.04  Aligned_cols=58  Identities=9%  Similarity=0.021  Sum_probs=43.8

Q ss_pred             CeEEEEEEecCCCEE-------------EEEeccCccHhHHHHHHHhhcCCcc-cceeeEEEecCCCCeeccccC
Q psy17656         21 KIEVAHITLLDGSLL-------------DVTIERKAKGEDLFDRVCDHLNLLE-RDYFGLTYDNKYDPQCWLEMV   81 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~-------------~~~v~~ka~G~~Ll~~Vc~~L~L~E-~dYFGL~y~d~~~~~~WLd~~   81 (85)
                      -.+.|+|+.|||+..             .+.++.+..=...+..||+++++.. .+.+-|||.+..   .|||++
T Consensus        14 ~~~~~~vq~l~d~dpf~~~~~~ep~r~~l~~fd~~~pL~~~i~~v~~~~~~p~~~e~yaLQ~~~~~---~Yl~~~   85 (339)
T 3dad_A           14 SVVTVRVQYLEDTDPFASANFPEPRRAPTCSLDGALPLGAQIPAVHRLLGAPLKLEDSALQVSPSG---YYLDTE   85 (339)
T ss_dssp             CEEEEEEEECCCSSTTSCCCCCSSSSCCEEEEETTSCGGGTHHHHHHHHTCSSCSSSEEEEETTTC---CBCCTT
T ss_pred             ceeEEEEEeecCCCccccCCCCCCCCCCceeccCcCCHHHHHHHHHHhccCCCcccceeeeecCCC---Ceeccc
Confidence            468999999999862             2334555555667789999999998 789999997643   477743

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=91.99  E-value=0.57  Score=27.24  Aligned_cols=39  Identities=5%  Similarity=0.101  Sum_probs=36.1

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ..|.+.|..++|..+.++|.+..+-.+|-.++++..++.
T Consensus         4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip   42 (90)
T 4dwf_A            4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP   42 (90)
T ss_dssp             CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred             cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence            568999999999999999999999999999999999874

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=91.93  E-value=0.36  Score=30.84  Aligned_cols=42  Identities=12%  Similarity=0.162  Sum_probs=36.9

Q ss_pred             CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ..+..+.++|.-.|+.++.|.|.+.++=+.|++..|++.++.
T Consensus        36 ~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~   77 (115)
T 3kyd_D           36 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP   77 (115)
T ss_dssp             ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred             CCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC
Confidence            346789999999999999999999999999999999999974

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=91.90  E-value=0.35  Score=26.77  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=36.9

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      |.+.|..++|..+.+++.+.++-.+|-+.+++..++. .+..-|.|
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~-~~~q~L~~   45 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP-PQQQRLIY   45 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC-hHHEEEEE
Confidence            4678899999999999999999999999999999875 33344444

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=91.77  E-value=0.4  Score=26.54  Aligned_cols=45  Identities=16%  Similarity=0.227  Sum_probs=37.2

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      |.+.|..++|..+.+++++.++-.+|-+.+++..++. .+..-|.|
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~-~~~q~L~~   45 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLIF   45 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC-HHHeEEEE
Confidence            4678899999999999999999999999999999875 33444555

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=91.60  E-value=0.49  Score=34.32  Aligned_cols=46  Identities=15%  Similarity=0.162  Sum_probs=40.3

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeE
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGL   66 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL   66 (85)
                      +.+.|+|.+.||+...+.|++..++.+|.+..+...++...+...|
T Consensus        30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L   75 (281)
T 4gmv_A           30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSL   75 (281)
T ss_dssp             CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEE
T ss_pred             ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEE
Confidence            5689999999999999999999999999999998888876665544

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=91.59  E-value=0.38  Score=28.84  Aligned_cols=44  Identities=11%  Similarity=0.222  Sum_probs=35.9

Q ss_pred             CCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         16 KPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        16 ~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      +...+..+.+.|..++|..+.+.|.+.++-.+|-.++++..++.
T Consensus        16 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip   59 (98)
T 4hcn_B           16 LYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP   59 (98)
T ss_dssp             ------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred             CCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence            44567789999999999999999999999999999999999974

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.56  E-value=0.78  Score=25.79  Aligned_cols=39  Identities=15%  Similarity=0.119  Sum_probs=35.6

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ..+.+.|..++|..+.+++.+.++-.+|-+++.+..++.
T Consensus         6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~   44 (81)
T 2dzi_A            6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP   44 (81)
T ss_dssp             SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC
T ss_pred             CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence            568999999999999999999999999999999999874

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=91.56  E-value=0.29  Score=27.93  Aligned_cols=39  Identities=13%  Similarity=0.098  Sum_probs=34.9

Q ss_pred             eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656         22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE   60 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E   60 (85)
                      .+.+.|..+++..+.+++.+.++-.+|-+++++..++..
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~   41 (85)
T 3n3k_B            3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPP   41 (85)
T ss_dssp             -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred             eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH
Confidence            478899999999999999999999999999999998743

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=91.44  E-value=0.55  Score=26.56  Aligned_cols=38  Identities=11%  Similarity=0.119  Sum_probs=35.2

Q ss_pred             eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      .+.+.|..++|..+.+.|.+..+=.+|.+.+++..++.
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~   40 (79)
T 2uyz_B            3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP   40 (79)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCC
Confidence            47899999999999999999999999999999999975

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=91.25  E-value=0.75  Score=26.40  Aligned_cols=47  Identities=15%  Similarity=0.073  Sum_probs=39.1

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      ..+.+.|..+++..+.+++++.++-.+|-.++++..++. .+..-|.|
T Consensus         6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~-~~~qrL~~   52 (87)
T 1wh3_A            6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP-KKQQQLEF   52 (87)
T ss_dssp             SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC-TTTEEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC-hHHEEEEE
Confidence            468999999999999999999999999999999999864 33334444

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=91.22  E-value=0.7  Score=26.13  Aligned_cols=39  Identities=8%  Similarity=-0.070  Sum_probs=35.9

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ..+.+.|..++|..+.+++++.++-.+|-.++.+..++.
T Consensus         3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip   41 (79)
T 3phx_B            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ   41 (79)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC
T ss_pred             CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC
Confidence            358899999999999999999999999999999999875

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=90.94  E-value=1.5  Score=27.15  Aligned_cols=50  Identities=18%  Similarity=0.137  Sum_probs=39.6

Q ss_pred             CCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEE
Q psy17656         17 PLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT   67 (85)
Q Consensus        17 ~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~   67 (85)
                      ........++|+|+||+.+.-.+....+=++|++-|-.+.+.. ..-|-|.
T Consensus         8 ~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~-~~~f~L~   57 (109)
T 2dzk_A            8 RDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT-YGNFSLA   57 (109)
T ss_dssp             CCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS-SCSCEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC-CCceEEE
Confidence            3455678999999999999999999999999999999887532 2345554

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=90.70  E-value=0.91  Score=26.22  Aligned_cols=42  Identities=5%  Similarity=0.069  Sum_probs=37.1

Q ss_pred             CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ..+..+.+.|..++|..+.+++++..+-.+|-.++++..++.
T Consensus        13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip   54 (88)
T 4eew_A           13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP   54 (88)
T ss_dssp             --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred             cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence            455679999999999999999999999999999999999874

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=90.34  E-value=0.6  Score=27.39  Aligned_cols=37  Identities=14%  Similarity=0.213  Sum_probs=34.2

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      |.+.|..++|..+.+++.+.++-.+|-..+++..++.
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip   38 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   38 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC
Confidence            5788999999999999999999999999999999874

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=90.04  E-value=0.68  Score=27.48  Aligned_cols=37  Identities=14%  Similarity=0.213  Sum_probs=33.6

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      |.+.|..++|..+.+++++.++-.+|-.++++..++.
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~   37 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   37 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence            4678999999999999999999999999999999874

>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=89.45  E-value=1.5  Score=27.60  Aligned_cols=62  Identities=15%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccC
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMV   81 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~   81 (85)
                      +...+.|+|...|.+..++.+...+.+++++..|.+.++..|.+ .=|.=....|++.=|.|+
T Consensus         6 ~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~-l~Lv~v~ssGEk~~lqp~   67 (104)
T 1wgy_A            6 SGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEED-LALVAITFSGEKHELQPN   67 (104)
T ss_dssp             CSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGG-EEEEEECSSCCCCBCCTT
T ss_pred             CCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccc-eEEEEEccCCcEeecCCc
Confidence            34567899999999999999999999999999999999986654 234444556666655554

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=89.42  E-value=2.1  Score=25.12  Aligned_cols=40  Identities=5%  Similarity=0.038  Sum_probs=36.0

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ....+.+.|..+ +..+.+++.+..+-.+|-+++++..++.
T Consensus        14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip   53 (96)
T 1wx8_A           14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCN   53 (96)
T ss_dssp             CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSC
T ss_pred             CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence            457799999999 8899999999999999999999999874

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=89.36  E-value=1.2  Score=27.83  Aligned_cols=53  Identities=9%  Similarity=0.154  Sum_probs=42.2

Q ss_pred             eEEEEEEecCC-------CEEEEEeccCccHhHHHHHHHhhcCCccc----ceeeEEEecCCCC
Q psy17656         22 IEVAHITLLDG-------SLLDVTIERKAKGEDLFDRVCDHLNLLER----DYFGLTYDNKYDP   74 (85)
Q Consensus        22 ~~~~~V~LLD~-------t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~----dYFGL~y~d~~~~   74 (85)
                      .+.++|+.-++       -...+.|.+...=++|.+.+.+.+++...    .-+.|+|.|.+|-
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD   68 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGD   68 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSC
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCC
Confidence            37888887642       25778899999999999999999998633    3389999998764

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=89.23  E-value=1.5  Score=25.47  Aligned_cols=39  Identities=8%  Similarity=-0.070  Sum_probs=35.5

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ..+.+.|..++|..+.+++++.++-.+|-.++++..++.
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip   41 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ   41 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence            358899999999999999999999999999999998874

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=88.96  E-value=0.91  Score=26.56  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=33.7

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      |.+.|..++|..+.+++++.++-.+|-.++.+..++.
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip   37 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP   37 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence            4678999999999999999999999999999999874

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=88.73  E-value=1  Score=29.35  Aligned_cols=44  Identities=14%  Similarity=0.187  Sum_probs=36.5

Q ss_pred             CCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         16 KPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        16 ~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      +.-....|.+.|..++|..+.++|++.++-.+|-.++++..++.
T Consensus        14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip   57 (172)
T 3u30_A           14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   57 (172)
T ss_dssp             -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred             CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence            33456779999999999999999999999999999999999874

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=88.22  E-value=1.8  Score=25.24  Aligned_cols=49  Identities=8%  Similarity=0.014  Sum_probs=40.5

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      .+..|.+.|..+.|..+++++++.++-.+|-.++.+..++. .+..-|.|
T Consensus         7 ~~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrLi~   55 (84)
T 2kk8_A            7 HHSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP-VSKQTLIV   55 (84)
T ss_dssp             CCCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC-GGGEEEEE
T ss_pred             ccCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC-hHHEEEEE
Confidence            35678999999999999999999999999999999999974 33334444

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=88.16  E-value=1.4  Score=24.69  Aligned_cols=46  Identities=20%  Similarity=0.252  Sum_probs=37.3

Q ss_pred             eEEEEEEecCCCEE-EEE-eccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         22 IEVAHITLLDGSLL-DVT-IERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        22 ~~~~~V~LLD~t~~-~~~-v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      .+.+.|..++|..+ .++ +++.++-.+|-.++++..++. .+..-|.|
T Consensus         2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip-~~~qrL~~   49 (78)
T 2faz_A            2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE-PGLQRLFY   49 (78)
T ss_dssp             CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred             cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC-hhhEEEEE
Confidence            47889999999885 898 999999999999999999874 33334444

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=88.00  E-value=1.9  Score=26.44  Aligned_cols=41  Identities=12%  Similarity=0.143  Sum_probs=37.2

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ....+.+.|..++|..+.+.+.+.++-.+|-.++++..++.
T Consensus        32 ~~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip   72 (111)
T 3vdz_A           32 ELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   72 (111)
T ss_dssp             GGGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred             CCccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence            34569999999999999999999999999999999999875

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=87.97  E-value=1.1  Score=26.14  Aligned_cols=38  Identities=21%  Similarity=0.186  Sum_probs=34.5

Q ss_pred             eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      -|.+.|..++|..+.+++++.++-.+|-+++++..++.
T Consensus         9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip   46 (88)
T 1sif_A            9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIP   46 (88)
T ss_dssp             -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC
T ss_pred             ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC
Confidence            47889999999999999999999999999999999874

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=87.88  E-value=2.3  Score=26.11  Aligned_cols=45  Identities=13%  Similarity=0.149  Sum_probs=39.3

Q ss_pred             CCCCCeEEEEEEecCCC-EEEEEeccCccHhHHHHHHHhhcCCccc
Q psy17656         17 PLKGKIEVAHITLLDGS-LLDVTIERKAKGEDLFDRVCDHLNLLER   61 (85)
Q Consensus        17 ~~~~~~~~~~V~LLD~t-~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~   61 (85)
                      ...+..+.++|.--|+. .+.|.|.+.++=+.|++.-|+..++...
T Consensus        20 ~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~   65 (97)
T 2jxx_A           20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGR   65 (97)
T ss_dssp             CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSS
T ss_pred             CCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcc
Confidence            45668899999999995 8999999999999999999999998543

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=87.77  E-value=1.2  Score=30.51  Aligned_cols=53  Identities=9%  Similarity=-0.019  Sum_probs=38.6

Q ss_pred             cCCCCCCCCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccc
Q psy17656          9 ESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERD   62 (85)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~d   62 (85)
                      ++.-+|+...+...+.++|.- +++++.|.|.+.++=+-|++.-|++.++.-..
T Consensus         8 ~~~~~~~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~   60 (209)
T 3uf8_A            8 HSGEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDS   60 (209)
T ss_dssp             ----------CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGG
T ss_pred             cCCcccceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChhe
Confidence            445555566788899999987 88899999999999999999999999985443

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=87.39  E-value=1.9  Score=31.37  Aligned_cols=61  Identities=15%  Similarity=0.142  Sum_probs=50.9

Q ss_pred             eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcC---CcccceeeEEEecCC-CCeeccccCCC
Q psy17656         22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLN---LLERDYFGLTYDNKY-DPQCWLEMVNY   83 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~---L~E~dYFGL~y~d~~-~~~~WLd~~K~   83 (85)
                      .++.+|++. +++..+.++++++-.+....|.+.++   ..+.+-+||--.+.+ ....||+..+.
T Consensus         3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~   67 (371)
T 3ivf_A            3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKA   67 (371)
T ss_dssp             CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSB
T ss_pred             cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCC
Confidence            367788888 88899999999999999999999997   457788899998763 45699998874

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=87.31  E-value=2.6  Score=25.34  Aligned_cols=51  Identities=8%  Similarity=0.095  Sum_probs=41.1

Q ss_pred             CCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         16 KPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        16 ~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      ++.....+.+.|..++++ +.+++++.++-.+|-+++.+..++. .+..-|.|
T Consensus        16 ~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrLi~   66 (100)
T 1yqb_A           16 PRGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH-PDQLVLIF   66 (100)
T ss_dssp             CSCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCC-GGGEEEEE
T ss_pred             CCCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcC-hhhEEEEE
Confidence            455678899999999996 6899999999999999999999874 33334444

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=87.10  E-value=2.5  Score=24.21  Aligned_cols=47  Identities=23%  Similarity=0.303  Sum_probs=38.1

Q ss_pred             CeEEEEEEecCC-CEEEE-EeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         21 KIEVAHITLLDG-SLLDV-TIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        21 ~~~~~~V~LLD~-t~~~~-~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      ..+.+.|..++| ..+.+ .+.+.++-.+|-..+++..++. .+..-|.|
T Consensus         6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip-~~~qrL~~   54 (89)
T 1wy8_A            6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR-PECQRLFY   54 (89)
T ss_dssp             SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC-TTTEEEEE
T ss_pred             CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC-hhhEEEEE
Confidence            568999999999 78999 5999999999999999998874 33334444

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=86.83  E-value=1.9  Score=26.26  Aligned_cols=39  Identities=13%  Similarity=0.177  Sum_probs=35.9

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ..+.+.|..+++..+.+++.+.++-.+|-.++++..++.
T Consensus        34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip   72 (111)
T 2ojr_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   72 (111)
T ss_dssp             SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence            469999999999999999999999999999999999874

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=86.49  E-value=1.2  Score=27.73  Aligned_cols=40  Identities=18%  Similarity=0.207  Sum_probs=36.0

Q ss_pred             CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      +..|.+.|..++|+.++++|++.++-.+|-..|-+..++.
T Consensus         5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~   44 (105)
T 1v2y_A            5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK   44 (105)
T ss_dssp             CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCC
Confidence            3459999999999999999999999999999999888764

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=86.31  E-value=1.6  Score=26.92  Aligned_cols=41  Identities=10%  Similarity=0.113  Sum_probs=37.5

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      .+..+.+.|..++|..+.+++++.++-.+|-.++.+..++.
T Consensus         6 ~~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip   46 (114)
T 2kdi_A            6 HHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP   46 (114)
T ss_dssp             CCCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred             cCCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence            45778999999999999999999999999999999999874

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=86.24  E-value=2.8  Score=23.66  Aligned_cols=36  Identities=8%  Similarity=0.091  Sum_probs=32.9

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhc
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHL   56 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L   56 (85)
                      ..+.+.|..++|..+.+++++.++-.+|-.++.+.+
T Consensus         4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~   39 (85)
T 2wyq_A            4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEK   39 (85)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhc
Confidence            458899999999999999999999999999999983

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=85.61  E-value=1.8  Score=30.79  Aligned_cols=47  Identities=15%  Similarity=0.127  Sum_probs=34.8

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEE
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT   67 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~   67 (85)
                      ....|+|.+-||+..++.|++..++.+|.+.+...-+..+.++.-|-
T Consensus         7 ~~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~   53 (256)
T 3hk0_A            7 AKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLV   53 (256)
T ss_dssp             -CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEE
T ss_pred             CceEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEE
Confidence            44689999999999999999999999999999987777766665553

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=84.92  E-value=4.6  Score=24.29  Aligned_cols=47  Identities=13%  Similarity=0.075  Sum_probs=39.3

Q ss_pred             eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecC
Q psy17656         22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNK   71 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~   71 (85)
                      .+.++|+.-+  .+.+.+.+.+.=++|.++|++.|.+. .+--=|.|.+.
T Consensus         5 ~~~VKV~~~~--tvairvp~~~~y~~L~~~l~~kL~l~-~~~~~LsYk~~   51 (83)
T 1oey_A            5 AYTLKVHYKY--TVVMKTQPGLPYSQVRDMVSKKLELR-LEHTKLSYRPR   51 (83)
T ss_dssp             CEEEEEESSS--EEEEEECTTCCHHHHHHHHHHHTTCC-GGGCCEEECCT
T ss_pred             cEEEEEEEEE--EEEEECCCCCCHHHHHHHHHHHhCCC-cceeEEEeeCC
Confidence            4788898873  78889999999999999999999996 34457889885

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=84.02  E-value=3.2  Score=22.85  Aligned_cols=44  Identities=11%  Similarity=0.068  Sum_probs=35.8

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      +.+.|.. +|..+.+.+.+.++-.+|-.++.+..++. .+..-|.|
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~-~~~qrL~~   48 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP-VANQRLIY   48 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC-HHHEEEEE
Confidence            6778888 88899999999999999999999999874 33344444

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=83.88  E-value=5.7  Score=24.55  Aligned_cols=43  Identities=12%  Similarity=0.179  Sum_probs=37.3

Q ss_pred             CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCccc
Q psy17656         18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER   61 (85)
Q Consensus        18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~   61 (85)
                      .....+.++|. -+|.+..|.|.+.++=+.|++.-|++.|+.-.
T Consensus        17 ~~~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~   59 (95)
T 2l76_A           17 ETPRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPS   59 (95)
T ss_dssp             SCCCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGG
T ss_pred             CCCCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChh
Confidence            45566999999 48999999999999999999999999998543

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=83.50  E-value=5.9  Score=24.46  Aligned_cols=48  Identities=15%  Similarity=0.167  Sum_probs=39.4

Q ss_pred             CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      ...+.+.|..++|..+.+++.+.++-.+|-.++++..++. .+-.-|.|
T Consensus        74 ~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~qrL~~  121 (152)
T 3b08_A           74 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLIF  121 (152)
T ss_dssp             TTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred             ccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcC-hhhEEEEE
Confidence            3457888999999999999999999999999999998875 33344555

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=82.39  E-value=2.6  Score=26.19  Aligned_cols=37  Identities=14%  Similarity=0.213  Sum_probs=33.6

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      |.+.|..++|..+.+++++.++-.+|-..+++..++.
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip   37 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   37 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence            4678889999999999999999999999999999975

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=81.89  E-value=6.3  Score=23.58  Aligned_cols=49  Identities=8%  Similarity=0.131  Sum_probs=38.9

Q ss_pred             CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      .....+.+.|..++++ +.+++.+..+-.+|-.++.+..++. .+..-|.|
T Consensus        13 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrLi~   61 (106)
T 1wx7_A           13 QDPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH-PDQLVLIF   61 (106)
T ss_dssp             CCSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCC-TTTEEEEE
T ss_pred             CCCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcC-hhhEEEEE
Confidence            3567899999999985 6899999999999999999999874 33334444

>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}

Probab=81.87  E-value=5.2  Score=25.69  Aligned_cols=61  Identities=16%  Similarity=0.165  Sum_probs=47.7

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCccc-----ceeeEEEecCCCCeeccccC
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER-----DYFGLTYDNKYDPQCWLEMV   81 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~-----dYFGL~y~d~~~~~~WLd~~   81 (85)
                      ..+.|+|-..|.+.+++.+...+.+++++..|.+.++..|.     +-.=|.=....|++.=|.|+
T Consensus         8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~   73 (120)
T 2dhz_A            8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPT   73 (120)
T ss_dssp             CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTT
T ss_pred             CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCc
Confidence            56889999999999999999999999999999999998664     12344444556666655544

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=81.68  E-value=2.1  Score=25.99  Aligned_cols=37  Identities=3%  Similarity=-0.021  Sum_probs=33.3

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      |.+.|..++|..+.++|++..+-.+|-.++.+..++.
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip   38 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCE   38 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence            5788999999999999999999999999999999874

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=81.36  E-value=4.5  Score=27.68  Aligned_cols=46  Identities=15%  Similarity=0.194  Sum_probs=39.1

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeE
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGL   66 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL   66 (85)
                      +-+.|+|...||+...+.|++..+..++.+.++...++.......|
T Consensus        33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l   78 (291)
T 3tca_A           33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCL   78 (291)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEE
T ss_pred             cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEE
Confidence            4478999999999999999999999999999999988865544444

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=81.02  E-value=1.4  Score=25.59  Aligned_cols=45  Identities=7%  Similarity=0.067  Sum_probs=35.6

Q ss_pred             EEEEEEecCCCEEEEE-eccCccHhHHHHHHHhhcCCcccceeeEEEe
Q psy17656         23 EVAHITLLDGSLLDVT-IERKAKGEDLFDRVCDHLNLLERDYFGLTYD   69 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~-v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~   69 (85)
                      |.++|..++|+.. +. +++.++-.+|...|.+..++. .+.+.|.|-
T Consensus         1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~-~~~qrL~~~   46 (86)
T 2kzr_A            1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIA-PGSQRILVG   46 (86)
T ss_dssp             CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCC-TTTCCCEES
T ss_pred             CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCC-ccceEEEeC
Confidence            4578999999654 77 999999999999999999864 345566663

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=80.27  E-value=4.5  Score=27.53  Aligned_cols=41  Identities=12%  Similarity=0.141  Sum_probs=36.9

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      .+-.|.+.|..++|..+.++|++..+-.+|-.++++..++.
T Consensus       102 d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp  142 (189)
T 3q3f_A          102 DHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP  142 (189)
T ss_dssp             CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred             cccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC
Confidence            44558899999999999999999999999999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	85
d1gg3a3	81	d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R	4e-22
d1ef1a3	84	d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [Ta	5e-20
d1h4ra3	84	d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [	3e-19

>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (196), Expect = 4e-22
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query: 26 HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
           ++LLD ++ +  +E+ AKG+DL  RVC+HLNLLE DYFGL   +    + WL+ 
Sbjct: 4  KVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDS 58

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (183), Expect = 5e-20
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 26 HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
           +T +D  L +  I+    G+ LFD+V   + L E  +FGL Y +      WL++
Sbjct: 5  RVTTMDAEL-EFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKL 58

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (177), Expect = 3e-19
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
          K     I  +D  + +   E K KG+DLFD VC  L L E  +FGL Y  K D   WL+M
Sbjct: 1  KTFTVRIVTMDAEM-EFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIK-DTVAWLKM 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	85
d1gg3a3	81	Erythroid membrane protein 4.1R {Human (Homo sapie	99.94
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1h4ra3	84	Merlin {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	97.41
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	96.53
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.48
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	94.65
d1wgya_	104	Rap guanine nucleotide exchange factor 5, RapGEF5	93.77
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	93.56
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	93.32
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	93.18
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	92.91
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	92.55
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	92.51
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	92.07
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	92.06
d1c1yb_	77	c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}	91.99
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	91.98
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	91.98
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	91.81
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	91.69
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	91.64
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	91.35
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	90.88
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	90.24
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	89.74
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	89.61
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	89.61
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	88.61
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	88.5
d2al6a3	100	Focal adhesion kinase 1 {Chicken (Gallus gallus) [	88.3
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	87.25
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	84.41
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	83.12
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	83.05
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	82.96
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	80.33

>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-27  Score=146.49  Aligned_cols=61  Identities=41%  Similarity=0.811  Sum_probs=59.4

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY   83 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~   83 (85)
                      ++|+|.||||+++++.|+++++|++||++||++|||.|+|||||+|.|++++.+|||++|+
T Consensus         1 ~~C~V~lLD~~~~~~~v~~~~~G~~l~~~Vc~~l~l~E~~YFGL~y~d~~~~~~WLd~~K~   61 (81)
T d1gg3a3           1 MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKE   61 (81)
T ss_dssp             CEEEEECTTSCEEEEECCTTCCHHHHHHHHHHHHTTCSCCSSSCEEECCSSSCCBCCTTSC
T ss_pred             CEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCcccccceEEEECCCCceEecccccc
Confidence            5899999999999999999999999999999999999999999999999999999999986

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.9e-26  Score=139.09  Aligned_cols=61  Identities=28%  Similarity=0.530  Sum_probs=58.3

Q ss_pred             eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656         22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY   83 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~   83 (85)
                      .+.|+|.+||+ +++|.++++|+|++||++||++|||.|+|||||+|.|++++.+|||++|+
T Consensus         1 t~~v~V~~LD~-~~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~   61 (84)
T d1ef1a3           1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK   61 (84)
T ss_dssp             CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSB
T ss_pred             CEEEEEEEcCC-EEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCc
Confidence            37899999997 69999999999999999999999999999999999999999999999986

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-25  Score=138.32  Aligned_cols=61  Identities=41%  Similarity=0.634  Sum_probs=57.1

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY   83 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~   83 (85)
                      +.+.|+|.+||+ +++|.++++|+|++||++||+||||.|+|||||+|.|+ ++.+|||++|+
T Consensus         1 k~~~v~V~lLD~-~le~~v~~~a~G~~L~d~Vc~~L~L~E~~YFGL~y~~~-~~~~WLd~~k~   61 (84)
T d1h4ra3           1 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIK-DTVAWLKMDKK   61 (84)
T ss_dssp             CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEET-TEEEECCTTSB
T ss_pred             CeEEEEEEEcCC-cEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEecC-CceEEccCCCc
Confidence            468999999998 58999999999999999999999999999999999995 78899999986

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00028  Score=42.47  Aligned_cols=62  Identities=18%  Similarity=0.213  Sum_probs=51.5

Q ss_pred             CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCC-CCeeccc
Q psy17656         18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKY-DPQCWLE   79 (85)
Q Consensus        18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~-~~~~WLd   79 (85)
                      .+++...++|.+.||+...+.|++.++.+++...+++.+++.+...|+|-=...+ +..+.|+
T Consensus         5 ~~~~~~vvkv~~~dg~~k~l~V~~~tTa~eV~~~l~~K~~~~~~~~f~L~E~~~~~~leR~L~   67 (100)
T d1wgra_           5 SSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLE   67 (100)
T ss_dssp             CCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEEC
T ss_pred             CCCCceEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHhCCCCCCCeEEEEecCCCcceeecC
Confidence            3556789999999999999999999999999999999999988889999755443 3344444

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.53  E-value=0.0021  Score=37.45  Aligned_cols=46  Identities=9%  Similarity=0.256  Sum_probs=41.6

Q ss_pred             EEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec
Q psy17656         24 VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN   70 (85)
Q Consensus        24 ~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d   70 (85)
                      .+.|..+++....+.+.|.++=.++++.+|+++|+ +.+-++|.|.+
T Consensus         2 ~V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~-~~~~~~Lkh~~   47 (76)
T d2al3a1           2 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDF-NPSEYDLKFQR   47 (76)
T ss_dssp             CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTC-CGGGCEEEETT
T ss_pred             cEEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCC-ChhHceeeeCC
Confidence            36788999999999999999999999999999997 67778999964

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.48  E-value=0.056  Score=31.14  Aligned_cols=54  Identities=9%  Similarity=0.060  Sum_probs=44.9

Q ss_pred             CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCe
Q psy17656         18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQ   75 (85)
Q Consensus        18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~   75 (85)
                      ...+.+.+++..-++ ...+.+.+...=.+|.+.|.+.+++.   -|-|.|.|.++..
T Consensus         8 ~~~~~ikVKv~~~~D-~~~~~l~~~it~~dL~~kI~~rf~~~---~~~lkY~Dedgd~   61 (85)
T d1ip9a_           8 SGLKTTKIKFYYKDD-IFALMLKGDTTYKELRSKIAPRIDTD---NFKLQTKLFDGSG   61 (85)
T ss_dssp             CCCCCEEEEECBTTC-CEEEEECSCCCHHHHHHHHHHHHTSS---CEEEEECCSSSCC
T ss_pred             CCCCCEEEEEEECCc-EEEEEeCCCCCHHHHHHHHHHHhCCC---ceEEEEEcCCCCE
Confidence            455678888888665 78889999999999999999999863   4999999987743

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.039  Score=30.88  Aligned_cols=39  Identities=10%  Similarity=0.099  Sum_probs=35.8

Q ss_pred             eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656         22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE   60 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E   60 (85)
                      .+.++|...||+++.|.|.+.++=+.|++..|++.++..
T Consensus         2 ~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~   40 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM   40 (77)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred             EEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCh
Confidence            478899999999999999999999999999999999843

>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Rap guanine nucleotide exchange factor 5, RapGEF5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.13  Score=31.09  Aligned_cols=63  Identities=14%  Similarity=0.178  Sum_probs=50.8

Q ss_pred             CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccC
Q psy17656         18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMV   81 (85)
Q Consensus        18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~   81 (85)
                      ..+..+-|+|...|.+..++.+...+.+++++..|++.|+..+-+. =|.=...+|++.=|.++
T Consensus         5 ss~dei~~~VY~~Dhsy~tlr~~v~~sa~eI~~~vaeKl~~~~e~L-~LV~V~SsGEr~~lkp~   67 (104)
T d1wgya_           5 SSGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDL-ALVAITFSGEKHELQPN   67 (104)
T ss_dssp             CCSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGE-EEEEECSSCCCCBCCTT
T ss_pred             CCCCeEEEEEEecCCcEEEEEeeccCcHHHHHHHHHHHhCCCCCce-EEEEEccCCcEEeeCcc
Confidence            3677899999999999999999999999999999999999876553 23344566777666554

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.1  Score=28.69  Aligned_cols=46  Identities=9%  Similarity=0.160  Sum_probs=38.5

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEe
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYD   69 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~   69 (85)
                      +.+.|..++|..+.++|++..+-.+|-.++.+..|+. .+..-|-|.
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip-~~~qrLi~~   46 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP-SEKQRLIYQ   46 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCC-TTTCCCEET
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCC-hHHEEEEEC
Confidence            5788999999999999999999999999999999973 333355553

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.32  E-value=0.15  Score=27.85  Aligned_cols=47  Identities=17%  Similarity=0.251  Sum_probs=39.8

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN   70 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d   70 (85)
                      |.+.|..++|.++.++|++..+-.+|-.++.+..++ ..+.+-|-|..
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi-~~~~qrLi~~G   47 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGI-PPVQQRLIYAG   47 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCC-CGGGEEEEETT
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCC-ChHHEEEEECC
Confidence            467899999999999999999999999999999997 44555666654

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.11  Score=29.41  Aligned_cols=36  Identities=17%  Similarity=0.078  Sum_probs=34.0

Q ss_pred             EEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         24 VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        24 ~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      .|+|.|+||+...+.+.+..+-++++...|++=||.
T Consensus         2 ~iRv~LPngq~T~V~vrpG~tir~~L~k~l~kRgl~   37 (73)
T d1wxma1           2 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLN   37 (73)
T ss_dssp             EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCC
T ss_pred             eEEEEcCCCCeEEEEecCCCCHHHHHHHHHHHcCCC
Confidence            589999999999999999999999999999999985

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=92.91  E-value=0.2  Score=27.81  Aligned_cols=46  Identities=9%  Similarity=0.029  Sum_probs=37.8

Q ss_pred             CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      ..+.++|.- ++++..|.|.+.++=+.|++..|+..++... -+=|.|
T Consensus         3 ~~I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~-~~~l~f   48 (79)
T d1euvb_           3 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD-SLRFLY   48 (79)
T ss_dssp             SEEEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGG-GEEEEE
T ss_pred             cEEEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCChH-hEEEEE
Confidence            457888875 7889999999999999999999999999543 345555

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.13  Score=28.38  Aligned_cols=46  Identities=15%  Similarity=0.220  Sum_probs=38.2

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEe
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYD   69 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~   69 (85)
                      |.+.|..++|..++++|++..+-.+|-+++....++. .+..=|-|.
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~-~~~qrL~~~   46 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLIFA   46 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC-GGGEEEEET
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCC-hHHEEeEEC
Confidence            4678999999999999999999999999999999984 333445553

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=0.33  Score=28.22  Aligned_cols=49  Identities=8%  Similarity=0.121  Sum_probs=39.6

Q ss_pred             CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      ..+..+.++|..+++ ..+++|++..+-.+|-.+|+...++.- +..=|-|
T Consensus        28 ~~~~~i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~~-~~qrLi~   76 (103)
T d1j8ca_          28 AEPKIIKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQT-DQLVLIF   76 (103)
T ss_dssp             CCCCCEEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSCS-SSEEEEE
T ss_pred             CCCCeEEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcCH-HHeeeee
Confidence            356679999999988 478999999999999999999999743 3344444

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.07  E-value=0.12  Score=30.64  Aligned_cols=40  Identities=18%  Similarity=0.207  Sum_probs=37.0

Q ss_pred             CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      +..|.+.|..+||..+.++|++.++-.+|-.+|.+.+++.
T Consensus         5 ss~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip   44 (105)
T d1v2ya_           5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK   44 (105)
T ss_dssp             CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC
Confidence            4568999999999999999999999999999999999884

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.57  Score=27.27  Aligned_cols=55  Identities=11%  Similarity=0.185  Sum_probs=43.8

Q ss_pred             CCCCCCCeEEEEEEe----cCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec
Q psy17656         15 TKPLKGKIEVAHITL----LDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN   70 (85)
Q Consensus        15 ~~~~~~~~~~~~V~L----LD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d   70 (85)
                      ..-+......+.|.+    ..|..+.++|+...++++|-++|.+.+++. .++.-|-|..
T Consensus         8 ~~f~~tg~ati~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~-~~~qkLi~~G   66 (100)
T d1wjua_           8 DNYRTTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQ-ENYIKIVINK   66 (100)
T ss_dssp             CSSSCCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCC-STTCEEEETT
T ss_pred             ccccccceEEEEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCC-CeeEEEEEcc
Confidence            344566667888887    458889999999999999999999999984 4666777754

>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: c-Raf1 RBD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.23  Score=28.35  Aligned_cols=36  Identities=11%  Similarity=0.020  Sum_probs=34.0

Q ss_pred             EEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         24 VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        24 ~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      .|+|.|+|++...+.+.+..+-++++...|++=||.
T Consensus         3 ~iRv~LPngq~T~V~vrpG~tird~L~k~l~kRgl~   38 (77)
T d1c1yb_           3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQ   38 (77)
T ss_dssp             EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCC
T ss_pred             eEEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCC
Confidence            689999999999999999999999999999998885

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.24  Score=27.47  Aligned_cols=42  Identities=12%  Similarity=0.042  Sum_probs=37.2

Q ss_pred             CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCccc
Q psy17656         20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER   61 (85)
Q Consensus        20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~   61 (85)
                      |..+.+.|..++|..+.+.|++..+-.+|-..+.+..++...
T Consensus         1 g~e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~   42 (80)
T d1ttna1           1 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPG   42 (80)
T ss_dssp             CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCST
T ss_pred             CCeEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcc
Confidence            346789999999999999999999999999999999997533

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.16  Score=28.12  Aligned_cols=37  Identities=11%  Similarity=0.223  Sum_probs=34.6

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      +.++|..++|..+.++|++.++-.+|-..+....|+.
T Consensus         1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip   37 (76)
T d1z2ma1           1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVH   37 (76)
T ss_dssp             CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccC
Confidence            3688999999999999999999999999999999985

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.27  Score=28.56  Aligned_cols=51  Identities=10%  Similarity=0.132  Sum_probs=39.1

Q ss_pred             eEEEEEEecCCCEEEEEec--cCccHhHHHHHHHhhcCCcccceeeEEEecCCCCee
Q psy17656         22 IEVAHITLLDGSLLDVTIE--RKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQC   76 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~--~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~   76 (85)
                      .+.++|..=++ ...|.+.  ..+.-.+|...|-..++|.+   |+|.|.|.++.++
T Consensus         4 ~vtvKvtf~~d-t~RF~ls~~~~~~~~~L~~~i~~rf~l~~---~~lkY~Ddd~e~v   56 (85)
T d2bkfa1           4 QVTLNVTFKNE-IQSFLVSDPENTTWADIEAMVKVSFDLNT---IQIKYLDEENEEV   56 (85)
T ss_dssp             CEEEEEEETTE-EEEEEESCGGGCCHHHHHHHHHHHHTCSS---EEEEEECTTSCEE
T ss_pred             cEEEEEEECCc-eEEEEecCCCCCcHHHHHHHHHHhcCccc---ceEEEEcCCCCEE
Confidence            36788887444 5566664  45668999999999999853   9999999887654

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.69  E-value=0.44  Score=27.93  Aligned_cols=41  Identities=10%  Similarity=-0.051  Sum_probs=37.6

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      ....+.+.|..+.|..+.+.|.+..+-.+|-++|++..++.
T Consensus        25 ~~~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip   65 (100)
T d1uh6a_          25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR   65 (100)
T ss_dssp             CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC
T ss_pred             CCceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCC
Confidence            44668999999999999999999999999999999999985

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.64  E-value=0.27  Score=28.04  Aligned_cols=46  Identities=20%  Similarity=0.143  Sum_probs=38.9

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      -.++|+++||+.+...+.+..+=++|++-|..+..-.+...|.|..
T Consensus        15 t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t   60 (89)
T d1i42a_          15 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMT   60 (89)
T ss_dssp             EEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEec
Confidence            5899999999999999999999999999998876555556677754

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.3  Score=27.48  Aligned_cols=49  Identities=14%  Similarity=0.079  Sum_probs=41.6

Q ss_pred             CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEe
Q psy17656         20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYD   69 (85)
Q Consensus        20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~   69 (85)
                      ...|.+.|..++|..+.++|++..+-.+|-.++....++. .+..-|-|.
T Consensus         5 s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip-~~~qrLi~~   53 (87)
T d1wh3a_           5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP-KKQQQLEFQ   53 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC-TTTEEEEET
T ss_pred             CCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcC-hHHeEEEee
Confidence            4568999999999999999999999999999999999975 344566664

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.88  E-value=0.38  Score=26.88  Aligned_cols=42  Identities=5%  Similarity=0.029  Sum_probs=37.1

Q ss_pred             CCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656         17 PLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL   59 (85)
Q Consensus        17 ~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~   59 (85)
                      +-.+..+.+.|..+++ ..+++|++..+-.+|-.++.+..++.
T Consensus         2 ~~~~~~i~I~Vkt~~~-~~~~~V~~~~tV~~lK~~i~~~~gi~   43 (84)
T d1yqba1           2 RGSPHLIKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKAH   43 (84)
T ss_dssp             SCCTTEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred             CCCCCEEEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHHHCcC
Confidence            3466789999999987 57999999999999999999999984

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.49  Score=26.85  Aligned_cols=48  Identities=10%  Similarity=0.121  Sum_probs=39.2

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCC--cccceeeEEEec
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNL--LERDYFGLTYDN   70 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L--~E~dYFGL~y~d   70 (85)
                      |.+.|..++|..+.++|++..+-.+|-.++.+..+.  ...+.+-|-|..
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~G   50 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAG   50 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETT
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECC
Confidence            468899999999999999999999999999988764  345556666654

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.74  E-value=0.46  Score=25.88  Aligned_cols=47  Identities=9%  Similarity=-0.054  Sum_probs=39.3

Q ss_pred             eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEe
Q psy17656         22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYD   69 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~   69 (85)
                      .+.+.|.-+.|..+.++|++..+-.+|-.++++..++.- +.+=|-|.
T Consensus         1 mi~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~-~~q~Li~~   47 (73)
T d1m94a_           1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQP-NKIVLQKG   47 (73)
T ss_dssp             CEEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTT-TSEEEESS
T ss_pred             CeEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccc-cEEEEEEE
Confidence            367889999999999999999999999999999999853 34445553

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.61  E-value=0.6  Score=25.32  Aligned_cols=48  Identities=15%  Similarity=0.109  Sum_probs=40.5

Q ss_pred             eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec
Q psy17656         22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN   70 (85)
Q Consensus        22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d   70 (85)
                      .+.+.|..++|..+.+.|++..+-.+|-.++++..|+.. +..=|-|..
T Consensus         3 ~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~qrL~~~g   50 (76)
T d1z2ma2           3 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD-DLFWLTFEG   50 (76)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG-GGEEEEETT
T ss_pred             CEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCCh-hHeEEEECC
Confidence            578899999999999999999999999999999999863 444555543

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.61  E-value=0.81  Score=27.42  Aligned_cols=38  Identities=13%  Similarity=0.258  Sum_probs=34.3

Q ss_pred             CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhh
Q psy17656         18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDH   55 (85)
Q Consensus        18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~   55 (85)
                      .....+.++|.+++|...+|.|++..+-.+|-.+|+..
T Consensus        12 ~~~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~   49 (116)
T d1wgha_          12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN   49 (116)
T ss_dssp             CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHS
T ss_pred             CCCCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhh
Confidence            36677999999999999999999999999999999743

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.61  E-value=0.57  Score=25.53  Aligned_cols=45  Identities=20%  Similarity=0.354  Sum_probs=37.8

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      +.++|.--|++.+.|.|.+.++=+.|++.-|++.++.... +-+.|
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~-~~f~f   46 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQ-IRFRF   46 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTT-CEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccc-eEEEE
Confidence            5788888999999999999999999999999999986543 33444

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.50  E-value=0.64  Score=25.62  Aligned_cols=39  Identities=8%  Similarity=0.062  Sum_probs=35.7

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCccc
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER   61 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~   61 (85)
                      |.+.|..++|..+.++|++.++-.+|-..|.+..++...
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~   41 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPAD   41 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGG
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChh
Confidence            678999999999999999999999999999999998643

>d2al6a3 d.15.1.4 (A:31-130) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Focal adhesion kinase 1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=88.30  E-value=0.78  Score=27.33  Aligned_cols=47  Identities=11%  Similarity=0.263  Sum_probs=39.4

Q ss_pred             EEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec-CCCCeeccccC
Q psy17656         35 LDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN-KYDPQCWLEMV   81 (85)
Q Consensus        35 ~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d-~~~~~~WLd~~   81 (85)
                      -.+.....+.-+-+.+.|...+++....-|||+..+ ..++.+||-++
T Consensus        24 k~Vr~~d~~dVk~II~~v~~~~~~~~~~~YalRL~h~~s~E~~WLhpd   71 (100)
T d2al6a3          24 SIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLD   71 (100)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTT
T ss_pred             eeEEeCCcccHHHHHHHHHHhcCCCcceEEEEEeccCccCCcEecCCC
Confidence            455666677788899999999999888899999987 46889999876

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=1.4  Score=24.14  Aligned_cols=47  Identities=26%  Similarity=0.368  Sum_probs=38.7

Q ss_pred             EEEEEEecCCC-EEEE-EeccCccHhHHHHHHHhhcCCcccceeeEEEec
Q psy17656         23 EVAHITLLDGS-LLDV-TIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN   70 (85)
Q Consensus        23 ~~~~V~LLD~t-~~~~-~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d   70 (85)
                      |.+.|..++|. ...+ .|.+.++-.+|-..+.+..|+ +.++.=|-|..
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gi-p~~~qrLi~~G   49 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDV-RPECQRLFYRG   49 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCC-CTTTEEEEETT
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCC-CchhcEEEEEe
Confidence            57899999995 5666 599999999999999999997 56666777653

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.41  E-value=1.1  Score=25.73  Aligned_cols=34  Identities=6%  Similarity=-0.070  Sum_probs=30.6

Q ss_pred             CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHH
Q psy17656         20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVC   53 (85)
Q Consensus        20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc   53 (85)
                      +..|.++|..+||+++.+.+++.++-.+|-.++.
T Consensus         5 ~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~   38 (95)
T d1wiaa_           5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYF   38 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHS
T ss_pred             CCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHh
Confidence            4568999999999999999999999999988775

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.12  E-value=0.97  Score=24.57  Aligned_cols=47  Identities=11%  Similarity=0.090  Sum_probs=38.6

Q ss_pred             EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCC--cccceeeEEEe
Q psy17656         23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNL--LERDYFGLTYD   69 (85)
Q Consensus        23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L--~E~dYFGL~y~   69 (85)
                      +.+.|..++|..+.++|++.++-.+|-.+++...+.  ...+..-|-|.
T Consensus         3 ~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~   51 (77)
T d1oqya4           3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA   51 (77)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEEC
Confidence            578899999999999999999999999999988773  34455555554

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.05  E-value=2.1  Score=23.51  Aligned_cols=48  Identities=6%  Similarity=0.088  Sum_probs=38.2

Q ss_pred             CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      ..+.+.+.|..+++ ..++.|++.++-.+|-..+.+..++.... .=|.|
T Consensus         7 ~~~~i~v~Vk~~~~-~~~i~v~~~~tV~~lK~~I~~~~~v~~~~-qrL~f   54 (83)
T d1wx8a1           7 SSRIIRVSVKTPQD-CHEFFLAENSNVRRFKKQISKYLHCNADR-LVLIF   54 (83)
T ss_dssp             CSCEEEEEEECSSS-EEEEEEETTCCHHHHHHHHHHHTCSCTTT-BCCEE
T ss_pred             CCCeEEEEEEcCCC-cEEEEECCCChHHHHHHHHHHHhCCChhH-EEEEE
Confidence            44679999999887 46899999999999999999999985332 24444

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.96  E-value=2.6  Score=23.62  Aligned_cols=48  Identities=10%  Similarity=0.154  Sum_probs=37.4

Q ss_pred             CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEE
Q psy17656         18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT   67 (85)
Q Consensus        18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~   67 (85)
                      .......++|+|+||+.+.-.+.+..+=++|++-|-....  +.+-|.|.
T Consensus        12 ~~~~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~~~--~~~~f~l~   59 (96)
T d2cr5a1          12 TAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGY--HKSLYRLS   59 (96)
T ss_dssp             SCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTC--CTTTEEEE
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCcccHHHHHHHHHHhcc--Ccccceee
Confidence            3556789999999999999899999999999999865533  33445554

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.33  E-value=2.7  Score=23.37  Aligned_cols=38  Identities=16%  Similarity=0.195  Sum_probs=31.2

Q ss_pred             cCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656         30 LDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY   68 (85)
Q Consensus        30 LD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y   68 (85)
                      |+|..+.++|++..+-.+|-.+|.+..++. .+..=|.|
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip-~~~q~Li~   56 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMP-AGKQKLQY   56 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCC-TTTEEEEE
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCC-hHHEEEEe
Confidence            789999999999999999999999999874 33334444