Psyllid ID: psy17691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670---
Protein Sequence
LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVGFDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYHEE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHccHHHHHHHcccccHHHHHHHHHHccccccHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccHHHHHcccccEEEcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHccccHHHHcccccccccccccccccccccccHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHcccccccEEccccccHHHHHHHcccccccccccccccccHHHHHHHHcccEEccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEcccHcccHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHccccEEEEEcccccccccccHHccccccEEEEEccccccccHHHHHHHccccccccHHHHHHHHHHHHHccccEcccccccccccccEEEcccccHHHccHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccHcHEEEcccccHHHHHHHHccccEEcccccccccccHHHHHHccccEEEcccccHHHHHHHHHHHHccccHHEcccHHHHHHHHHHHHccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
LIDLAIDTYRRAIELQPNFPDAYCNLANALkekgqpnfpdAYCNLANALKekgqinvlhkppykytrelapgnririgyvssdfgnhptshlmqsvpgmhnksRVEIFCYalspddgttFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAiqinpgfadahsNLASihkdsgkrgffirTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVGFDLTFYLFQVMWlgypgtsgasymDYIITDAVTSPLALASQYseklafmpdtyfigdhnqmfphlkerfivsgkyseklafmpdtyfigdhnqmfphlkERFIVSGKTMIASGQVQTSVNGIVLqnglatnqtntktatgeevpqsivitsrqqyglpedaiVYCNfnqlykidpsTLQMWVNVLKAVPNSILWLLkfpavgeanisrplfrprlrpsastsiVLKAVPNSILWLlkfpavgeANIQATAQALGLDQHRILFSNVAakeehvrrgqladvcldtplcnghttsmdvlwtgtpvvtlpgetLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYHEE
Flexible Loop (DISEMBL)
LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEkgqinvlhkppykYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVGFDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLatnqtntktatgeevpqsiVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYHEE
Low Complexity Region (SEG)
LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVGFDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISrplfrprlrpSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYHEE
Disordered region (IsUnstruct)
***LAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGN*************HNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVGFDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATN************PQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY***
Disordered Region (DISOPRED)
LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVGFDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY***
Disordered Region (DISEMBL)
LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVGFDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYHEE
Disordered Region (DISPRO)
LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVGFDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYHE*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVGFDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYHEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	673	2.2.26 [Sep-21-2011]
Q8CGY8	1046	UDP-N-acetylglucosamine--	yes	N/A	0.453	0.291	0.541	1e-109
P81436	1046	UDP-N-acetylglucosamine--	yes	N/A	0.453	0.291	0.541	1e-109
O15294	1046	UDP-N-acetylglucosamine--	yes	N/A	0.453	0.291	0.541	1e-109
Q27HV0	1046	UDP-N-acetylglucosamine--	yes	N/A	0.453	0.291	0.538	1e-108
P56558	1036	UDP-N-acetylglucosamine--	yes	N/A	0.453	0.294	0.538	1e-107
O18158	1151	UDP-N-acetylglucosamine--	yes	N/A	0.399	0.233	0.446	7e-87
Q9M8Y0	977	Probable UDP-N-acetylgluc	yes	N/A	0.328	0.226	0.341	2e-43
A8BFN4	1480	UDP-N-acetylglucosamine--	N/A	N/A	0.234	0.106	0.31	2e-19
O82422	944	Probable UDP-N-acetylgluc	N/A	N/A	0.756	0.539	0.235	1e-18
Q3UV71	942	Transmembrane and TPR rep	no	N/A	0.193	0.138	0.383	5e-16

>sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/375 (54%), Positives = 242/375 (64%), Gaps = 70/375 (18%)

Query: 322 FQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKE 381
            Q MWLGYPGTSGA +MDYIITD  TSP  +A QYSEKLA+MP T+FIGDH  MFPHLK+
Sbjct: 658 IQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKK 717

Query: 382 RFIVSGK-----YSEKLAF-----------MPDTYFI-------GDHNQM------FPHL 412
           + ++  K     Y  ++             +PD   +       GD+          P +
Sbjct: 718 KAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNPDSSNTALNMPVI 777

Query: 413 KERFIVSGKT-MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGL 471
               I      MI  GQ+Q ++NG  + NGLAT Q N K ATGEEVP++I++T+R QYGL
Sbjct: 778 PMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGL 837

Query: 472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRP 531
           PEDAIVYCNFNQLYKIDPSTLQMW N+LK                               
Sbjct: 838 PEDAIVYCNFNQLYKIDPSTLQMWANILKR------------------------------ 867

Query: 532 SASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL 591
                     VPNS+LWLL+FPAVGE NIQ  AQ +GL Q+RI+FS VA KEEHVRRGQL
Sbjct: 868 ----------VPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQL 917

Query: 592 ADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQ 651
           ADVCLDTPLCNGHTT MDVLW GTP+VT+PGETLASRVAASQL  LGC ELIA++ +EY+
Sbjct: 918 ADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKSRQEYE 977

Query: 652 DIAIRLGTDRDYCEK 666
           DIA++LGTD +Y +K
Sbjct: 978 DIAVKLGTDLEYLKK 992

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 5EC: 5

>sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/375 (54%), Positives = 241/375 (64%), Gaps = 70/375 (18%)

Query: 322 FQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKE 381
            Q MWLGYPGTSGA +MDYIITD  TSP  +A QYSEKLA+MP T+FIGDH  MFPHLK+
Sbjct: 658 IQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKK 717

Query: 382 RFIVSGK-----YSEKLAF-----------MPDTYFI-------GDHNQM------FPHL 412
           + ++  K     Y  ++             +PD   +       GD+          P +
Sbjct: 718 KAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVI 777

Query: 413 KERFIVSGKT-MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGL 471
               I      MI  GQ+Q ++NG  + NGLAT Q N K ATGEEVP++I++T+R QYGL
Sbjct: 778 PMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGL 837

Query: 472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRP 531
           PEDAIVYCNFNQLYKIDPSTLQMW N+LK                               
Sbjct: 838 PEDAIVYCNFNQLYKIDPSTLQMWANILKR------------------------------ 867

Query: 532 SASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL 591
                     VPNS+LWLL+FPAVGE NIQ  AQ +GL Q+RI+FS VA KEEHVRRGQL
Sbjct: 868 ----------VPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQL 917

Query: 592 ADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQ 651
           ADVCLDTPLCNGHTT MDVLW GTP+VT+PGETLASRVAASQL  LGC ELIA+  +EY+
Sbjct: 918 ADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYE 977

Query: 652 DIAIRLGTDRDYCEK 666
           DIA++LGTD +Y +K
Sbjct: 978 DIAVKLGTDLEYLKK 992

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/375 (54%), Positives = 241/375 (64%), Gaps = 70/375 (18%)

Query: 322 FQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKE 381
            Q MWLGYPGTSGA +MDYIITD  TSP  +A QYSEKLA+MP T+FIGDH  MFPHLK+
Sbjct: 658 IQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKK 717

Query: 382 RFIVSGK-----YSEKLAF-----------MPDTYFI-------GDHNQM------FPHL 412
           + ++  K     Y  ++             +PD   +       GD+          P +
Sbjct: 718 KAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVI 777

Query: 413 KERFIVSGKT-MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGL 471
               I      MI  GQ+Q ++NG  + NGLAT Q N K ATGEEVP++I++T+R QYGL
Sbjct: 778 PMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGL 837

Query: 472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRP 531
           PEDAIVYCNFNQLYKIDPSTLQMW N+LK                               
Sbjct: 838 PEDAIVYCNFNQLYKIDPSTLQMWANILKR------------------------------ 867

Query: 532 SASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL 591
                     VPNS+LWLL+FPAVGE NIQ  AQ +GL Q+RI+FS VA KEEHVRRGQL
Sbjct: 868 ----------VPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQL 917

Query: 592 ADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQ 651
           ADVCLDTPLCNGHTT MDVLW GTP+VT+PGETLASRVAASQL  LGC ELIA+  +EY+
Sbjct: 918 ADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYE 977

Query: 652 DIAIRLGTDRDYCEK 666
           DIA++LGTD +Y +K
Sbjct: 978 DIAVKLGTDLEYLKK 992

Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1

 Score =  393 bits (1010), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/375 (53%), Positives = 241/375 (64%), Gaps = 70/375 (18%)

Query: 322 FQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKE 381
            Q MWLGYPGTSGA +MDYIITD  TSP  +A QYSEKLA+MP T+FIGDH  MFPHLK+
Sbjct: 658 IQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKK 717

Query: 382 RFIVSGK-----YSEKLAF-----------MPDTYFI-------GDHNQM------FPHL 412
           + ++  K     Y  ++             +PD   +       GD+          P +
Sbjct: 718 KAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVI 777

Query: 413 KERFIVSGKT-MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGL 471
               I      MI  GQ+Q ++NG  + NGLAT Q N K ATGEEVP++I++T+R QYGL
Sbjct: 778 PMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGL 837

Query: 472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRP 531
           PEDAIVYCNFNQLYKIDPSTLQMW N+LK                               
Sbjct: 838 PEDAIVYCNFNQLYKIDPSTLQMWANILKR------------------------------ 867

Query: 532 SASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL 591
                     VPNS+LWLL+FPAVGE NIQ  AQ +GL Q+RI+FS VA KEEHVRRGQL
Sbjct: 868 ----------VPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQL 917

Query: 592 ADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQ 651
           ADVCLDTPLCNGHTT MDVLW GTP+VT+PGETLASRVAASQL  LGC ELIA+  +E++
Sbjct: 918 ADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEFE 977

Query: 652 DIAIRLGTDRDYCEK 666
           DIA++LGTD +Y +K
Sbjct: 978 DIAVKLGTDLEYLKK 992

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1

 Score =  390 bits (1003), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/375 (53%), Positives = 241/375 (64%), Gaps = 70/375 (18%)

Query: 322 FQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKE 381
            Q MWLGYPGTSGA +MDYIITD  TSP  +A QYSEKLA+MP T+FIGDH  MFPHLK+
Sbjct: 648 IQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKK 707

Query: 382 RFIVSGK-----YSEKLAF-----------MPDTYFI-------GDHNQM------FPHL 412
           + ++  K     Y  ++             +PD   +       GD+          P +
Sbjct: 708 KAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADTTNTALNMPVI 767

Query: 413 KERFIVSGKT-MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGL 471
               I      MI  GQ+Q ++NG  + NGLAT Q N K ATGEEVP++I++T+R QYGL
Sbjct: 768 PMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGL 827

Query: 472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRP 531
           PEDAIVYCNFNQLYKIDPSTLQM  N+LK                               
Sbjct: 828 PEDAIVYCNFNQLYKIDPSTLQMGANILKR------------------------------ 857

Query: 532 SASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL 591
                     VPNS+LWLL+FPAVGE NIQ  AQ +GL Q+RI+FS VA KEEHVRRGQL
Sbjct: 858 ----------VPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQL 907

Query: 592 ADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQ 651
           ADVCLDTPLCNGHTT MDVLW GTP+VT+PGETLASRVAASQL  LGC ELIA++ +EY+
Sbjct: 908 ADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKSRQEYE 967

Query: 652 DIAIRLGTDRDYCEK 666
           DIA++LGTD +Y +K
Sbjct: 968 DIAVKLGTDLEYLKK 982

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|O18158|OGT1_CAEEL UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase OS=Caenorhabditis elegans GN=ogt-1 PE=1 SV=2

 Score =  322 bits (824), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 180/403 (44%), Positives = 219/403 (54%), Gaps = 134/403 (33%)

Query: 322  FQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKE 381
             QVMWLGYP TSGA++MDYIITDAVTSPL LA+                           
Sbjct: 765  IQVMWLGYPSTSGATFMDYIITDAVTSPLRLAN--------------------------- 797

Query: 382  RFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERF------------------------- 416
                   ++EKLA+MP T+FIGDH QM  HL ++                          
Sbjct: 798  ------AFTEKLAYMPHTFFIGDHAQMLRHLTDKVVVKDKETTERDSCLIMNTANMDPIL 851

Query: 417  -------------IVSG----------------------KTMIASGQVQTSV-NGIVLQN 440
                         +VSG                      K MI +GQ+  +V   + +QN
Sbjct: 852  AKSEIKEQVLDTEVVSGPNKELVRAEMVLPVLEVPTEPIKQMIMTGQMTMNVMEDMNVQN 911

Query: 441  GLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLK 500
            GL  +Q + K ATGEE+P S+++TSR QY LP+DAIV+CNFNQLYKIDPSTL MW+ +L+
Sbjct: 912  GLGQSQMHHKAATGEEIPNSVLLTSRAQYQLPDDAIVFCNFNQLYKIDPSTLDMWIKILE 971

Query: 501  AVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANI 560
             V                                        P SILWLL+FP  GE +I
Sbjct: 972  NV----------------------------------------PKSILWLLRFPYQGEEHI 991

Query: 561  QATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 620
            +      GLD  RI+FSNVAAKEEHVRRGQLADVCLDTPLCNGHTT MD+LWTGTP+VT+
Sbjct: 992  RKYCVERGLDPSRIVFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTGMDILWTGTPMVTM 1051

Query: 621  PGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDY 663
            P E+LASRVA SQL  LG PEL+A+T +EY  IA+RLGTD D+
Sbjct: 1052 PLESLASRVATSQLYALGVPELVAKTRQEYVSIAVRLGTDADH 1094

Addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1

 Score =  177 bits (450), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 155/340 (45%), Gaps = 119/340 (35%)

Query: 323 QVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKER 382
           QV ++G+PGT+GA+Y+DY++TD   SPL    QY+                    H+   
Sbjct: 694 QVSYMGFPGTTGATYIDYLVTDEFVSPL----QYA--------------------HI--- 726

Query: 383 FIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGL 442
                 YSEKL  +P  YF+ D+ Q                          N  VL    
Sbjct: 727 ------YSEKLVHLPHCYFVNDYKQK-------------------------NQDVLD--- 752

Query: 443 ATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAV 502
                N+K               R  YGLPED  ++  FNQLYK+DP  +  W N+LK  
Sbjct: 753 ----PNSKP-------------KRSDYGLPEDKFIFACFNQLYKMDPEIVNTWCNILKR- 794

Query: 503 PNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQA 562
                                                  VPNS LWLL+FPA GE   + 
Sbjct: 795 ---------------------------------------VPNSALWLLRFPAAGEMRFRT 815

Query: 563 TAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 622
            A A G+   +I+F++VA K EH+RR  LADV LDTPLCNGHTT  DVLW G P++TLP 
Sbjct: 816 YAAAQGVQPDQIIFTDVAMKSEHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPL 875

Query: 623 ETLASRVAASQ-LATLGCPELIARTHKEYQDIAIRLGTDR 661
           E +A+RVA S  LAT     +I  + +EY++ A+ L  ++
Sbjct: 876 EKMATRVAGSLCLATGLGHGMIVNSLEEYEEKAVSLALNK 915

O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|A8BFN4|OGT1_GIAIC UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase OS=Giardia intestinalis (strain ATCC 50803 / WB clone C6) GN=GL50803_12081 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 88/200 (44%), Gaps = 42/200 (21%)

Query: 466  RQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLF 525
            R  YG+P +  ++C FNQ+YK D  TL +                               
Sbjct: 1252 RALYGIPANCFLFCTFNQVYKFDMGTLGI------------------------------- 1280

Query: 526  RPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQA--TAQALGLDQHRILFSNVAAKE 583
                      + +L++VPN+   LLKFP   + +I+A    +A  +    I  S +  K 
Sbjct: 1281 ---------IAALLRSVPNAYYALLKFPPASQLHIEAFFRHKAPDILDRVIFLSMLPMKV 1331

Query: 584  EHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELI 643
            EH+RR    DV +DT  CNG T  +D LW+G PVV   GE + SR   S L+ L C +LI
Sbjct: 1332 EHIRRYLAVDVFVDTLKCNGSTIVLDALWSGVPVVGFVGEYILSRKTLSFLSVLECKDLI 1391

Query: 644  ARTHKEYQDIAIRLGTDRDY 663
              +  E   +  RL  D  Y
Sbjct: 1392 CASQGEAVLLCTRLAVDSGY 1411

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc).

Giardia intestinalis (strain ATCC 50803 / WB clone C6) (taxid: 184922)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|O82422|SPY_HORVU Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Hordeum vulgare GN=SPY PE=2 SV=1

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 139/590 (23%), Positives = 234/590 (39%), Gaps = 81/590 (13%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLA--------NIKREQGYIEEATRLYLKALEVFPE 182
           ++  A  CY+  L + P    + NN+A         +K E G I +    Y KAL     
Sbjct: 226 ELDAAIACYDRCLTISPNFEIAKNNMAIALTDLGTKVKIE-GDINQGVAYYKKALFYNWH 284

Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYS 242
           +A A  NL     +      A++ Y+ A+   P  A+A +N+G   K+  ++  A++CY 
Sbjct: 285 YADAMYNLGVAYGEMLNFEMAIVFYELALHFNPRCAEACNNLGVIYKDRDNLDKAVECYQ 344

Query: 243 RAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKDSVVM 302
            A+ I P F+ + +NL  ++   GK          +        +A++NL  +++D+  +
Sbjct: 345 MALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAYNNLGVLYRDAGSI 404

Query: 303 SLLQIIHEFIVGFDLTFYLFQVMWLGYPGTSGASY-----MDYIITDAVTSPLALASQYS 357
           +L    +E  +  D             P +  A       M+YI   +         ++ 
Sbjct: 405 TLSVQAYERCLQID-------------PDSRNAGQNRLLAMNYIDEGSDDKLYDAHREWG 451

Query: 358 EKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFI 417
           ++   +   Y   D+    P + +R +V G  S        +YF+        + K + +
Sbjct: 452 KRFMKLYAQYTSWDN----PKVADRPLVIGYVSPDFFTHSVSYFVEAPLTHHDYTKCKVV 507

Query: 418 V-------SGKTM------IASGQVQTSVNGIVLQN--------------GLATNQTNTK 450
           V         KT+      +  G V   + GI  +                L  +  N K
Sbjct: 508 VYSGVVKADAKTLRFKDKVLKKGGVWRDIYGIDEKKVATLVREDKVDILVELTGHTANNK 567

Query: 451 TATGEEVPQSIVIT---SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSIL 507
             T    P  I +T        GLP  AI Y   + L    P+T Q  V  L  +P S L
Sbjct: 568 LGTMACRPAPIQVTWIGYPNTTGLP--AIDYRITDSLAD-SPNTNQKHVEELVRLPESFL 624

Query: 508 W---------LLKFPAVGEANISRPLFR--PRLRPSAST--SIVLKAVPNSILWLLKFPA 554
                     +   PA+    I+   F    ++ P      + +L AVPNS L +   P 
Sbjct: 625 CYTPSPEAGPVCPTPAISNGFITFGSFNNLAKITPKVMQVWARILCAVPNSRLVVKCKPF 684

Query: 555 VGEANIQ---ATAQALGLDQHRI-LFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDV 610
             ++  Q   +T + LGL+  R+ L   +    +H++   L D+ LDT    G TT+ + 
Sbjct: 685 CCDSIRQKFLSTLEELGLESLRVDLLPLIHLNHDHMQAYSLMDISLDTFPYAGTTTTCES 744

Query: 611 LWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 660
           L+ G P VT+ G   A  V  S L  +G   L+A+T  EY  +A+ L +D
Sbjct: 745 LYMGVPCVTMAGSVHAHNVGVSLLTKVGLGRLVAKTEDEYVSLALDLASD 794

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus GN=Tmtc1 PE=2 SV=2

 Score = 87.0 bits (214), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 76/133 (57%), Gaps = 3/133 (2%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
           EA   Y TAL+L P HA +LNNL  + ++   + EA   Y KAL++ P+   A  NL ++
Sbjct: 561 EAIYHYRTALKLYPRHASALNNLGTLTKD---MAEAKMYYQKALQLHPQHNRALFNLGNL 617

Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
           L+ Q K  +A++  KE+I+  P FADAYS++ + L E +  + A   Y   I+  P  +D
Sbjct: 618 LKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSD 677

Query: 254 AHSNLASIHKDSG 266
            H+N A    DSG
Sbjct: 678 LHNNYAVFLVDSG 690

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	673
297304121	963	PREDICTED: UDP-N-acetylglucosamine--pept	0.897	0.627	0.465	1e-170
307193762	1180	UDP-N-acetylglucosamine--peptide N-acety	0.881	0.502	0.437	1e-143
332029693	1087	UDP-N-acetylglucosamine--peptide N-acety	0.878	0.543	0.430	1e-141
229577290	1061	O-glycosyltransferase [Nasonia vitripenn	0.878	0.557	0.427	1e-140
312381341	833	hypothetical protein AND_06385 [Anophele	0.872	0.704	0.431	1e-140
170036979	838	o-linked N-acetylglucosamine transferase	0.872	0.700	0.423	1e-138
260833062	1022	hypothetical protein BRAFLDRAFT_117202 [	0.876	0.577	0.400	1e-136
307173081	1092	UDP-N-acetylglucosamine--peptide N-acety	0.878	0.541	0.413	1e-135
195382543	1050	GJ20442 [Drosophila virilis] gi|19414478	0.861	0.552	0.420	1e-135
242023889	1041	UDP-N-acetylglucosamine--peptide N-acety	0.448	0.290	0.644	1e-126

>gi|297304121|ref|XP_002806323.1| PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [Macaca mulatta]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 365/784 (46%), Positives = 441/784 (56%), Gaps = 180/784 (22%)

Query: 9   YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
           Y +AIE QPNF  A+ NL      +G+               PNF DAY NL N LKE  
Sbjct: 180 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA- 238

Query: 54  QINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
              +  +    Y R   L+P + +  G ++  +       L         +  +E     
Sbjct: 239 --RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT----YRRAIE----- 287

Query: 112 LSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEAT 170
           L P     +  + + L     V+EAE+CYNTALRLCPTHADSLNNLANIKREQG IEEA 
Sbjct: 288 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 347

Query: 171 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230
           RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSNMGNTLKE
Sbjct: 348 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 407

Query: 231 MQDIQGALQCYSRAIQIN----------------------------------PGFADAHS 256
           MQD+QGALQCY+RAIQIN                                  P F DA+ 
Sbjct: 408 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 467

Query: 257 NLA---------SIHKDSGKRGFFIRTD------LNSAY------------FWLLLLDAH 289
           NLA         + + +  K+   I  D      L S +            F   + + H
Sbjct: 468 NLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERH 527

Query: 290 SNLA------------SIHKDSVVMSLLQIIHEFIVG-----FDLTFYLFQVMWLGYPGT 332
            NL              IH+D +   +L  ++ +  G     F L     Q MWLGYPGT
Sbjct: 528 GNLCLDKIPCNGKAADRIHQDGI--HILVNMNGYTKGARNELFALRPAPIQAMWLGYPGT 585

Query: 333 SGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGK---- 388
           SGA +MDYIITD  TSP  +A QYSEKLA+MP T+FIGDH  MFPHLK++ ++  K    
Sbjct: 586 SGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVIDFKSNGH 645

Query: 389 -YSEKLAF-----------MPDTYFI-------GDHNQM------FPHLKERFIVSGKT- 422
            Y  ++             +PD   +       GD+          P +    I      
Sbjct: 646 IYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVIPMNTIAEAVIE 705

Query: 423 MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFN 482
           MI  GQ+Q ++NG  + NGLAT Q N K ATGEEVP++I++T+R QYGLPEDAIVYCNFN
Sbjct: 706 MINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFN 765

Query: 483 QLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV 542
           QLYKIDPSTLQMW N+LK                                         V
Sbjct: 766 QLYKIDPSTLQMWANILKR----------------------------------------V 785

Query: 543 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN 602
           PNS+LWLL+FPAVGE NIQ  AQ +GL Q+RI+FS VA KEEHVRRGQLADVCLDTPLCN
Sbjct: 786 PNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCN 845

Query: 603 GHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 662
           GHTT MDVLW GTP+VT+PGETLASRVAASQL  LGC ELIA+  +EY+DIA++LGTD +
Sbjct: 846 GHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLE 905

Query: 663 YCEK 666
           Y +K
Sbjct: 906 YLKK 909

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307193762|gb|EFN76443.1| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [Harpegnathos saltator]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 341/780 (43%), Positives = 415/780 (53%), Gaps = 187/780 (23%)

Query: 1    LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ------------------------- 35
            LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ                         
Sbjct: 409  LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVVEAEECYNTALRLCPTHADSLNNL 468

Query: 36   ------------------------PNFPDAYCNLANALKEKGQIN--VLHKPPYKYTREL 69
                                    P F  A+ NLA+ L+++G++N  ++H   YK    +
Sbjct: 469  ANIKREQGFIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLNEALMH---YKEAIRI 525

Query: 70   APGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLL 129
             P          S+ GN  T   MQ + G        + CY  +      F+   S L  
Sbjct: 526  QP----TFADAYSNMGN--TLKEMQDIQGA-------LQCYTRAIQINPAFADAHSNLAS 572

Query: 130  IQ-----VSEAEECYNTALRLCPTHADSLNNLAN--------------IKREQGYIEEA- 169
            I      + EA + Y TAL+L P   D+  NLA+              +K+    + E  
Sbjct: 573  IHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQL 632

Query: 170  ------------TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
                        + LY  + E     AA H+NL   +++   L      Y  A+ I+   
Sbjct: 633  DKNRLPSVHPHHSMLYPLSHEFRKAIAARHANLC--IEKIHVLHKQPYKYPRAVGIRLKI 690

Query: 218  ADAYSNMGN--TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTD 275
                S+ GN  T   MQ I G        ++I   F  A SN      D G   F  +  
Sbjct: 691  GYVSSDFGNHPTSHLMQSIPGLHD--REKVEI---FCYALSN------DDGTT-FRAKIA 738

Query: 276  LNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVG-----FDLTFYLFQVMWLGYP 330
              + +F  L   A +  A+   ++  + +L  ++ +  G     F L     QVMWLGYP
Sbjct: 739  REAEHFVDLSQVACNGKAADRINADGIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYP 798

Query: 331  GTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYS 390
            GTSGA++MDY+ITD VTSPL LA+QYSEKLA+MP TYFIGDH QMFPHLKER I++ K +
Sbjct: 799  GTSGATFMDYLITDEVTSPLELANQYSEKLAYMPHTYFIGDHKQMFPHLKERLILTDKLN 858

Query: 391  EKLAFMPDTYFIGD-------HNQMFPHLKERFIVSGK--------------------TM 423
            +K     +   I          N +   ++E  +   K                    TM
Sbjct: 859  QKGKVADNVAVINATDLSPMIENTLVKEIREVVVPDAKNKPVEISLKVAELPTTTPIETM 918

Query: 424  IASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ 483
            IASGQ Q SVNG+V+QNG+AT Q N KTATGEEVPQ+IVIT+RQQYGLPEDA+VYCNFNQ
Sbjct: 919  IASGQCQMSVNGVVVQNGMATTQVNNKTATGEEVPQNIVITTRQQYGLPEDAVVYCNFNQ 978

Query: 484  LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVP 543
            LYKIDP TL MW ++LK VPNS+LWLL+FPAVG                           
Sbjct: 979  LYKIDPLTLHMWAHILKHVPNSVLWLLRFPAVG--------------------------- 1011

Query: 544  NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG 603
                         E N+QATAQ LGL   RILFSNVAAKEEHVRRGQLADVCLDTPLCNG
Sbjct: 1012 -------------EPNLQATAQQLGLAPGRILFSNVAAKEEHVRRGQLADVCLDTPLCNG 1058

Query: 604  HTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDY 663
            HTTSMDVLWTGTPVVTLPGETLASRVAASQL TLGCPEL+ART +EYQDIAIRLGTDR+Y
Sbjct: 1059 HTTSMDVLWTGTPVVTLPGETLASRVAASQLNTLGCPELVARTRQEYQDIAIRLGTDREY 1118

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029693|gb|EGI69572.1| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [Acromyrmex echinatior]

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 336/781 (43%), Positives = 406/781 (51%), Gaps = 190/781 (24%)

Query: 1    LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ------------------------- 35
            LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ                         
Sbjct: 316  LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVVEAEECYNTALRLCPTHADSLNNL 375

Query: 36   ------------------------PNFPDAYCNLANALKEKGQIN--VLHKPPYKYTREL 69
                                    P F  A+ NLA+ L+++G++N  ++H   YK    +
Sbjct: 376  ANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLNEALMH---YKEAIRI 432

Query: 70   APGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLL 129
             P          S+ GN  T   MQ + G        + CY  +      F+   S L  
Sbjct: 433  QP----TFADAYSNMGN--TLKEMQDIQGA-------LQCYTRAIQINPAFADAHSNLAS 479

Query: 130  IQ-----VSEAEECYNTALRLCPTHADSLNNL--------------ANIKREQGYIEEA- 169
            I      + EA + Y TAL+L P   D+  NL              A +K+    + E  
Sbjct: 480  IHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQL 539

Query: 170  ------------TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
                        + LY  + E     AA H+NL   +++   L      Y   I  +   
Sbjct: 540  DKNRLPSVHPHHSMLYPLSHEFRKAIAARHANLC--IEKIHVLHKQPYKYPRTISTRLKI 597

Query: 218  ADAYSNMGN--TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTD 275
                S+ GN  T   MQ I              PG  +        +  S   G   R  
Sbjct: 598  GYVSSDFGNHPTSHLMQSI--------------PGLHEREKVEIFCYALSADDGTTFRAK 643

Query: 276  L--NSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVG-----FDLTFYLFQVMWLG 328
            +   + +F  L     +  A+   ++  + +L  ++ +  G     F L     QVMWLG
Sbjct: 644  IARETEHFVDLSQIPCNGKAADRINADGIHILVNMNGYTKGARNEIFALRPAPIQVMWLG 703

Query: 329  YPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGK 388
            YPGTSGAS+MDY+ITD VTSPL LASQYSEKLA+MP TYFIGDH QMFPHLKER I++ K
Sbjct: 704  YPGTSGASFMDYLITDEVTSPLELASQYSEKLAYMPHTYFIGDHKQMFPHLKERLILTDK 763

Query: 389  YSEKLAFMPDTYFIGD-------HNQMFPHLKERFIVSGK-------------------T 422
             + K     +   I          N +   ++E  +   K                   T
Sbjct: 764  LNHKGKVADNVAVINATDLSPMIENTLIKEIREVVVPDKKQPVEISLKVAELPTTTPIET 823

Query: 423  MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFN 482
            MIASGQ Q SVNG+V+QNG+AT Q N KTATGEEVPQ+IVIT+RQQYGLPEDA+VYCNFN
Sbjct: 824  MIASGQCQMSVNGVVVQNGMATTQVNNKTATGEEVPQNIVITTRQQYGLPEDAVVYCNFN 883

Query: 483  QLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV 542
            QLYKIDP TL MW ++LK VPNS+LWLL+FPAVG                          
Sbjct: 884  QLYKIDPLTLHMWAHILKHVPNSVLWLLRFPAVG-------------------------- 917

Query: 543  PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN 602
                          E N+QATAQ LGL   RILFSNVAAKEEHVRRGQLADVCLDTPLCN
Sbjct: 918  --------------EPNLQATAQQLGLAPGRILFSNVAAKEEHVRRGQLADVCLDTPLCN 963

Query: 603  GHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 662
            GHTTSMDVLWTGTPVVTLPGETLASRVAASQL TLGCPEL+ART +EYQDI+IRLGTDR+
Sbjct: 964  GHTTSMDVLWTGTPVVTLPGETLASRVAASQLNTLGCPELVARTRQEYQDISIRLGTDRE 1023

Query: 663  Y 663
            Y
Sbjct: 1024 Y 1024

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|229577290|ref|NP_001153341.1| O-glycosyltransferase [Nasonia vitripennis]

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 335/784 (42%), Positives = 407/784 (51%), Gaps = 193/784 (24%)

Query: 1   LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ------------------------- 35
           LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ                         
Sbjct: 288 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVVEAEECYNTALRLCPTHADSLNNL 347

Query: 36  ------------------------PNFPDAYCNLANALKEKGQIN--VLHKPPYKYTREL 69
                                   P F  A+ NLA+ L+++G++N  ++H   YK    +
Sbjct: 348 ANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLNEALMH---YKEAIRI 404

Query: 70  APGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLL 129
            P          S+ GN  T   MQ V G        + CY  +      F+   S L  
Sbjct: 405 QP----TFADAYSNMGN--TLKEMQDVQGA-------LQCYTRAIQINPAFADAHSNLAS 451

Query: 130 IQ-----VSEAEECYNTALRLCPTHADSLNNL--------------ANIKREQGYIEEA- 169
           I      + EA + Y TAL+L P   D+  NL              A +K+    + E  
Sbjct: 452 IHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQL 511

Query: 170 ------------TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
                       + LY  + +     AA H+NL   +++   L      Y     ++   
Sbjct: 512 DKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLC--IEKIHVLHKQPFKYPREAGMRLKI 569

Query: 218 ADAYSNMGN--TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTD 275
               S+ GN  T   MQ I              PG  D ++     +  S   G   R  
Sbjct: 570 GYVSSDFGNHPTSHLMQSI--------------PGLHDRNNVEIFCYALSSDDGTTFRGK 615

Query: 276 L--NSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVG-----FDLTFYLFQVMWLG 328
           +   S +F  L     +  A+   +S  + +L  ++ +  G     F L     QVMWLG
Sbjct: 616 IARESEHFVDLSQVPCNGKAADRINSDGIHILVNMNGYTKGARNEIFALRPAPIQVMWLG 675

Query: 329 YPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGK 388
           YPGTSGAS+MDY+ITD VTSPL LASQYSEKLA+MP TYFIGDH QMFPHLKER I++ K
Sbjct: 676 YPGTSGASFMDYLITDEVTSPLELASQYSEKLAYMPHTYFIGDHRQMFPHLKERLILTDK 735

Query: 389 YSEKLAFMPDTYFIGD-------HNQMFPHLKERFIVSGK-------------------- 421
            ++      +   I          N +   +KE  +  G+                    
Sbjct: 736 LNKGNKLADNVAVINATDLSPMIENTLVKEIKEVIVPEGQSKSKAVEISMKVAELPTTTP 795

Query: 422 --TMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYC 479
             TMIASGQ Q SVNG+V+QNG+AT Q N KTATGEEVPQ+IVIT+RQQYGLPEDA+VYC
Sbjct: 796 IETMIASGQCQMSVNGVVVQNGMATTQVNNKTATGEEVPQNIVITTRQQYGLPEDAVVYC 855

Query: 480 NFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL 539
           NFNQLYKIDP TL MW  +LK VPNS+LWLL+FPAVG                       
Sbjct: 856 NFNQLYKIDPLTLHMWAYILKNVPNSVLWLLRFPAVG----------------------- 892

Query: 540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP 599
                            E N+Q TAQ LGL   RILFSNVAAKEEHVRRGQLADVCLDTP
Sbjct: 893 -----------------EQNLQTTAQQLGLAPGRILFSNVAAKEEHVRRGQLADVCLDTP 935

Query: 600 LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 659
           LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQL TLGCPEL+ART +EYQ+IA+RLGT
Sbjct: 936 LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLNTLGCPELVARTRQEYQEIAVRLGT 995

Query: 660 DRDY 663
           DR++
Sbjct: 996 DREF 999

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381341|gb|EFR27109.1| hypothetical protein AND_06385 [Anopheles darlingi]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 338/783 (43%), Positives = 415/783 (53%), Gaps = 196/783 (25%)

Query: 1   LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ------------------------- 35
           LIDLAIDTYRRAI+LQPNFPDAYCNLANALKEKGQ                         
Sbjct: 74  LIDLAIDTYRRAIDLQPNFPDAYCNLANALKEKGQVKEAEECYNIALRLCPNHADSLNNL 133

Query: 36  ------------------------PNFPDAYCNLANALKEKGQIN--VLHKPPYKYTREL 69
                                   P F  A+ NLA+ L+++G++N  +LH   YK    +
Sbjct: 134 ANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLNEALLH---YKEAIRI 190

Query: 70  APGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLL 129
            P          S+ GN  T   MQ V G        + CY  +      F+   S L  
Sbjct: 191 QPT----FADAYSNMGN--TLKEMQDVAGA-------LQCYTRAIQINPAFADAHSNLAS 237

Query: 130 IQ-----VSEAEECYNTALRLCPTHADSLNNL--------------ANIKREQGYIEEA- 169
           I      + EA + Y TAL+L P   D+  NL              A +K+    + +  
Sbjct: 238 IHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVAIVADQL 297

Query: 170 ------------TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHY-KEAIRIQPS 216
                       + LY  + E     AA H+NL   L++   L      + +E I  +  
Sbjct: 298 DKNRLPSVHPHHSMLYPLSHEFRKTIAARHANLC--LEKINVLHKPPYKFGREIIGGRLR 355

Query: 217 FADAYSNMGN--TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRT 274
                S+ GN  T   MQ I              PG  D        +  S   G   R 
Sbjct: 356 IGYVSSDFGNHPTSHLMQSI--------------PGLHDRSRVEIFCYALSPDDGTTFRA 401

Query: 275 DLNSA---YFWLLLLDAHSNLAS-IHKDSVVMSLLQIIHEFIVG-----FDLTFYLFQVM 325
            ++     +  L  L  +   A  IH D +  ++L  ++ +  G     F L     QVM
Sbjct: 402 KISREAEHFIDLSQLPCNGKAADRIHADGI--NILVNMNGYTKGARNEIFALRPAPVQVM 459

Query: 326 WLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIV 385
           WLGYPGTSGAS+MDYI+TDAVTSPL+L +QYSEKLA+MP TYFIGDH QMFPHLKER IV
Sbjct: 460 WLGYPGTSGASFMDYIVTDAVTSPLSLETQYSEKLAYMPHTYFIGDHRQMFPHLKERVIV 519

Query: 386 SGKYSEKLAFMPDTYFIGDHNQMFPHLK-------ERFIVSGK----------------- 421
           S K     + + D   + +   + P ++          +++ K                 
Sbjct: 520 SNKTQN--SALADNVAVINATDLSPLVESTDVKTVREVVLANKPVEIQHKVAELPTTTPI 577

Query: 422 -TMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCN 480
            TMIASGQVQTS+NG+V+QNGLAT QTN K ATGEEVPQ+IV+T+RQQYGLP+DAIVYCN
Sbjct: 578 ETMIASGQVQTSLNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRQQYGLPDDAIVYCN 637

Query: 481 FNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLK 540
           FNQLYKIDP TLQ W+                                         +LK
Sbjct: 638 FNQLYKIDPLTLQSWI----------------------------------------YILK 657

Query: 541 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL 600
            VPNS+LWLL+FPAVGEANIQATAQ +G+   RI+FSNVAAKEEHVRRGQLADVCLDTPL
Sbjct: 658 HVPNSVLWLLRFPAVGEANIQATAQQMGIAAGRIIFSNVAAKEEHVRRGQLADVCLDTPL 717

Query: 601 CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 660
           CNGHTTSMDVLWTGTPVVTLP ETLASRVAASQLATLGCPELIA++ +EYQDIA++LGTD
Sbjct: 718 CNGHTTSMDVLWTGTPVVTLPAETLASRVAASQLATLGCPELIAKSRQEYQDIAVKLGTD 777

Query: 661 RDY 663
           R+Y
Sbjct: 778 REY 780

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170036979|ref|XP_001846338.1| o-linked N-acetylglucosamine transferase, ogt [Culex quinquefasciatus] gi|167879966|gb|EDS43349.1| o-linked N-acetylglucosamine transferase, ogt [Culex quinquefasciatus]

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 331/782 (42%), Positives = 409/782 (52%), Gaps = 195/782 (24%)

Query: 1   LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ------------------------- 35
           LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ                         
Sbjct: 74  LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVQEAEDCYNTALRLCPNHADSLNNL 133

Query: 36  ------------------------PNFPDAYCNLANALKEKGQIN--VLHKPPYKYTREL 69
                                   P F  A+ NLA+ L+++G++N  +LH   YK    +
Sbjct: 134 ANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLNEALLH---YKEAIRI 190

Query: 70  APGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLL 129
            P          S+ GN  T   MQ V G        + CY  +      F+   S L  
Sbjct: 191 QP----TFADAYSNMGN--TLKEMQDVAGA-------LQCYTRAIQINPAFADAHSNLAS 237

Query: 130 IQ-----VSEAEECYNTALRLCPTHADSLNNL--------------ANIKREQGYIEEA- 169
           I      + +A + Y TAL+L P   D+  NL              A +K+    + +  
Sbjct: 238 IHKDSGNIPDAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVAIVADQL 297

Query: 170 ------------TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
                       + LY  + +     AA H+NL   L++   L      +   +  +   
Sbjct: 298 DKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLC--LEKINILHKPPYKFTRELTGRLRI 355

Query: 218 ADAYSNMGN--TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTD 275
               S+ GN  T   MQ I              PG  D        +  S   G   R+ 
Sbjct: 356 GYVSSDFGNHPTSHLMQSI--------------PGMHDRSKVEVFCYALSPDDGTTFRSK 401

Query: 276 LNSA---YFWLLLLDAHSNLAS-IHKDSVVMSLLQIIHEFIVG-----FDLTFYLFQVMW 326
           ++     +  L  +  +   A  IH D +   +L  ++ +  G     F L     QVMW
Sbjct: 402 ISRETEHFIELSQIPCNGKAADRIHADGI--HILVNMNGYTKGARNEIFALRPAPIQVMW 459

Query: 327 LGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVS 386
           LGYPGTSGAS+MDYI+TD+VTSP+ L  QYSEKLA+MP TYFIGDH QMFPHLKER IVS
Sbjct: 460 LGYPGTSGASFMDYIVTDSVTSPIELVDQYSEKLAYMPHTYFIGDHRQMFPHLKERVIVS 519

Query: 387 GKYSEKLAFMPDTYFIGDHNQMFPHLKE------RFIVSG-------------------K 421
           GK       + D   + +   + P ++       R +V                     +
Sbjct: 520 GKSQSNQ--LVDNVAVINATDLSPLVENTDVKTVREVVHANKTVEIQHKIVELPTTTPVE 577

Query: 422 TMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNF 481
           TMIASGQ+QTS+NG+V+QNGLAT QTN K ATGEEVPQ+IV+T+RQQYGLP+DA++YCNF
Sbjct: 578 TMIASGQIQTSLNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRQQYGLPDDAVIYCNF 637

Query: 482 NQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA 541
           NQLYKIDP TL  W N+LK                                         
Sbjct: 638 NQLYKIDPHTLTSWCNILKH---------------------------------------- 657

Query: 542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC 601
           VPN++LWLL+FPAVGEANIQA AQ LG+   RI+FSNVAAKEEHVRRGQLADVCLDTPLC
Sbjct: 658 VPNAVLWLLRFPAVGEANIQAAAQQLGVAPGRIIFSNVAAKEEHVRRGQLADVCLDTPLC 717

Query: 602 NGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 661
           NGHTTSMDVLWTGTPVVTLP ETLASRVAASQLATLGCPELIAR+ +EYQDIAI+LGTD+
Sbjct: 718 NGHTTSMDVLWTGTPVVTLPAETLASRVAASQLATLGCPELIARSRQEYQDIAIKLGTDK 777

Query: 662 DY 663
           +Y
Sbjct: 778 EY 779

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260833062|ref|XP_002611476.1| hypothetical protein BRAFLDRAFT_117202 [Branchiostoma floridae] gi|229296847|gb|EEN67486.1| hypothetical protein BRAFLDRAFT_117202 [Branchiostoma floridae]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 301/751 (40%), Positives = 413/751 (54%), Gaps = 161/751 (21%)

Query: 1   LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHK 60
           LIDLAIDTYRRAIELQP+FPD                   AYCNLANALKE+G++    +
Sbjct: 300 LIDLAIDTYRRAIELQPHFPD-------------------AYCNLANALKEQGKV-AESE 339

Query: 61  PPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALS--PDDGT 118
             Y    +L+P +   +  +++          ++   G   ++ V+++C AL   P+   
Sbjct: 340 ECYNTALQLSPTHADSLNNLAN----------IKREQGCTEEA-VKLYCKALEVFPEFAA 388

Query: 119 TFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKAL 177
             S + SVL    ++ EA   Y  A+R+ PT AD+ +N+ N  +E   I+ A + Y +A+
Sbjct: 389 AHSNLASVLQQQGKLQEALMHYKEAIRIAPTFADAYSNMGNALKEMQDIQGAMQCYTRAI 448

Query: 178 EVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL--------- 228
           ++ P FA AHSNLAS+ +  G++ +A+  Y+ A++++P F DAY N+ + L         
Sbjct: 449 QINPAFADAHSNLASIHKDSGQIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 508

Query: 229 ----KEMQDIQGALQCYSRAIQINP--------------GFADAHSNLA-------SIHK 263
               K++  I       +R   ++P                A  H NL        ++  
Sbjct: 509 NARMKKLVAIVADQLDKNRLPSVHPHHSMLYPLSHAFRKAIAARHGNLCLEKVFCYALSP 568

Query: 264 DSGK--RGFFIRTDLNSAYFWLLLLDAHSNLAS--IHKDSVVMSLLQIIHEFIVG----- 314
           D G   RG  ++    S +F  L     +  A+  IH+D +   +L  ++ +  G     
Sbjct: 569 DDGTTFRGKIVK---ESEHFVDLSQIPCNGKAADRIHQDGI--HILVNMNGYTKGARNEI 623

Query: 315 FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQ 374
           F L     Q MWLGYPGTSGAS+MDY+ITD +TSP+  A QYSEKLA+MP+T+F+GDH Q
Sbjct: 624 FALRPAPIQSMWLGYPGTSGASFMDYLITDVITSPIEQADQYSEKLAYMPNTFFVGDHAQ 683

Query: 375 MFPHLKERFIVSGKYS----------------EKLAFMPDTYFIGDHNQMFPHL------ 412
           MFPHLKER ++    S                + +  M D        ++  HL      
Sbjct: 684 MFPHLKERAVLGTTTSGLKIIDNKSVINATDLKPVLEMSDVKVYIKKEKVPLHLPLTNGD 743

Query: 413 -----KERFIVSG------------KTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGE 455
                +E  +V              +TM+  GQV T +NG+V+QNGLAT+Q N K ATGE
Sbjct: 744 SASGNEEEKVVETPIIEINTTTAQMQTMVTQGQVSTCMNGVVVQNGLATSQVNNKAATGE 803

Query: 456 EVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAV 515
           E P ++++T+R QYGLPED++VYCNFNQLYKIDP+TLQMWVN+L  V             
Sbjct: 804 EPPANVIVTTRVQYGLPEDSVVYCNFNQLYKIDPATLQMWVNILNRV------------- 850

Query: 516 GEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRIL 575
                                      PNS+LWLL+FPAVGE N+   A  +GL   RI+
Sbjct: 851 ---------------------------PNSVLWLLRFPAVGEQNVLNAATQMGLSPGRII 883

Query: 576 FSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA 635
           FS+VA KEEHVRRGQLADVCLD+PLCNGHTT MDVLW GTP++TLPGETLASRVAASQL 
Sbjct: 884 FSHVAPKEEHVRRGQLADVCLDSPLCNGHTTGMDVLWAGTPMITLPGETLASRVAASQLG 943

Query: 636 TLGCPELIARTHKEYQDIAIRLGTDRDYCEK 666
            LGCPEL+A T  EY+DIA++LG D D+  +
Sbjct: 944 CLGCPELVANTRAEYEDIAVQLGNDADFLRR 974

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307173081|gb|EFN64211.1| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [Camponotus floridanus]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 327/790 (41%), Positives = 404/790 (51%), Gaps = 199/790 (25%)

Query: 1    LIDLAIDTYRRAIELQPNFPDAYCNLA--------------------------------- 27
            LIDLAIDTYRRAIELQPNFPDAYCNLA                                 
Sbjct: 313  LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVVEAEECYNTALRLCPTHADSLNNL 372

Query: 28   ---------NALKEKGQ---------------PNFPDAYCNLANALKEKGQIN--VLHKP 61
                     N  +E+G                P F  A+ NLA+ L+++G++N  ++H  
Sbjct: 373  VQTYAVSTANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLNEALMH-- 430

Query: 62   PYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFS 121
             YK    + P          S+ GN  T   MQ + G        + CY  +      F+
Sbjct: 431  -YKEAIRIQP----TFADAYSNMGN--TLKEMQDIQGA-------LQCYTRAIQINPAFA 476

Query: 122  YIISVLLLIQ-----VSEAEECYNTALRLCPTHADSLNNLAN--------------IKRE 162
               S L  I      + EA + Y TAL+L P   D+  NLA+              +K+ 
Sbjct: 477  DAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKL 536

Query: 163  QGYIEEA-------------TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
               + E              + LY  + E     AA H+NL   +++   L      Y  
Sbjct: 537  VSIVAEQLDKNRLPSVHPHHSMLYPLSHEFRKAIAARHANLC--IEKIHVLHKQPYKYPR 594

Query: 210  AIRIQPSFADAYSNMGN--TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
            +I  +       S+ GN  T   MQ I              PG  D  +     +  S  
Sbjct: 595  SICARLKIGYVSSDFGNHPTSHLMQSI--------------PGLHDRENVEIFCYALSAD 640

Query: 268  RGFFIRTDL--NSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVG-----FDLTFY 320
             G   R  +   + +F  L     +  A+   ++  + +L  ++ +  G     F L   
Sbjct: 641  DGTTFRAKIAREAEHFVDLSQIPCNGKAADRINADGIHILVNMNGYTKGARNEIFALRPA 700

Query: 321  LFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLK 380
              QVMWLGYPGTSGAS+MDY+ITD VTSPL LA+QYSEKLA+MP TYFIGDH QMFPHLK
Sbjct: 701  AIQVMWLGYPGTSGASFMDYLITDEVTSPLELANQYSEKLAYMPHTYFIGDHKQMFPHLK 760

Query: 381  ERFIVSGKYSEKLAFMPDTYFIGD-------HNQMFPHLKERFIVSGK------------ 421
            ER I++ K + K     +   I          N +   ++E  +   K            
Sbjct: 761  ERLILADKSNHKGKVADNVAVINATDLSPMIENTLIKEIREVIVPDAKKQPVEISLKVAE 820

Query: 422  --------TMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPE 473
                    TMIASGQ Q SVNG+V+QNG+ T Q N K ATGEEVPQ+IVIT+RQQYGLPE
Sbjct: 821  LPTTTPIETMIASGQCQMSVNGVVVQNGMTTTQVNNKAATGEEVPQNIVITTRQQYGLPE 880

Query: 474  DAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSA 533
            DA+VYCNFNQLYKIDP TL MW ++LK VPN++LWLL+FPAVG                 
Sbjct: 881  DAVVYCNFNQLYKIDPLTLHMWAHILKHVPNAVLWLLRFPAVG----------------- 923

Query: 534  STSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLAD 593
                                   E N+Q+TAQ LGL   RILFSNVAAKEEHVRRGQLAD
Sbjct: 924  -----------------------EPNLQSTAQQLGLTPGRILFSNVAAKEEHVRRGQLAD 960

Query: 594  VCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDI 653
            VCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQL TLGCP+L+ART +EYQDI
Sbjct: 961  VCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLNTLGCPDLVARTRQEYQDI 1020

Query: 654  AIRLGTDRDY 663
            AIRLGTDR+Y
Sbjct: 1021 AIRLGTDREY 1030

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195382543|ref|XP_002049989.1| GJ20442 [Drosophila virilis] gi|194144786|gb|EDW61182.1| GJ20442 [Drosophila virilis]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 332/790 (42%), Positives = 408/790 (51%), Gaps = 210/790 (26%)

Query: 1    LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ------------------------- 35
            LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ                         
Sbjct: 294  LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVKEAEECYNTALRLCSNHADSLNNL 353

Query: 36   ------------------------PNFPDAYCNLANALKEKGQIN--VLHKPPYKYTREL 69
                                    P+F  A+ NLA+ L+++G++   ++H   YK    +
Sbjct: 354  ANIKREQGFIEEATRLYLKALEVFPDFAAAHSNLASVLQQQGKLKEALMH---YKEAIRI 410

Query: 70   APGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLL 129
             P          S+ GN  T   +Q V G        + CY  +      F+   S L  
Sbjct: 411  QPT----FADAYSNMGN--TLKELQDVSGA-------LQCYTRAIQINPAFADAHSNLAS 457

Query: 130  IQ-----VSEAEECYNTALRLCPTHADSLNNLAN--------------IKREQGYIEEA- 169
            I      + EA + Y TAL+L P   D+  NLA+              +K+    + E  
Sbjct: 458  IHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDIRMKKLVSIVAEQL 517

Query: 170  ------------TRLYLKALEVFPEFAAAHSNLA----SVLQQQGKLTDALLHYKEAIRI 213
                        + LY    E     AA H+NL      VL +Q       L     +RI
Sbjct: 518  EKNRLPSVHPHHSMLYPLTHEFRKAIAARHANLCLEKVHVLHKQSYNFAKELSKDGRLRI 577

Query: 214  QPSFADAYSNMGN--TLKEMQDIQG-------ALQCYSRAIQINPGFADAHSNLASIHKD 264
                    S+ GN  T   MQ I G        + CY+ +      F          HK 
Sbjct: 578  ----GYLSSDFGNHPTSHLMQSIPGLHDRSKVEIFCYALSPDDGTTFR---------HKI 624

Query: 265  SGKRGFFIRTDLNSAYFWLLLLDAHSNLAS-IHKDSVVMSLLQIIHEFIVG-----FDLT 318
            S +   F+          L L+  +   A  I+KD +   +L  ++ +  G     F L 
Sbjct: 625  SRESEHFVD---------LSLIPCNGKAADQIYKDGI--HILVNMNGYTKGARNEIFALR 673

Query: 319  FYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPH 378
                QVMWLGYPGTSGAS+MDYIITDAVTSP  LA QYSEKL++MP TYFIGDH QMFPH
Sbjct: 674  PAPIQVMWLGYPGTSGASFMDYIITDAVTSPKELAYQYSEKLSYMPFTYFIGDHKQMFPH 733

Query: 379  LKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGK----------------- 421
            LKER IV  K    +A   D   + +   + P ++   +   K                 
Sbjct: 734  LKERIIVCDKQQSSVA---DNVAVINATDLSPLVENTDVKEIKEVVNAHKPVEITHKVAE 790

Query: 422  --------TMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPE 473
                    +MIASGQVQTS+NG+++QNGLAT QTN K ATGEEVPQ+IVIT+R+QY LP+
Sbjct: 791  LPSTTQIVSMIASGQVQTSLNGVLVQNGLATTQTNNKAATGEEVPQNIVITTRRQYMLPD 850

Query: 474  DAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSA 533
            DAIVYCNFNQLYKIDP TLQ WV                                     
Sbjct: 851  DAIVYCNFNQLYKIDPQTLQSWV------------------------------------- 873

Query: 534  STSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLAD 593
               ++LK VP S+LWLL+FPAVGE NI+ +   LG+   R++FSNVAAKEEHVRRGQLAD
Sbjct: 874  ---VILKNVPKSVLWLLRFPAVGEQNIKKSVSDLGVSSERVIFSNVAAKEEHVRRGQLAD 930

Query: 594  VCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDI 653
            +CLDTPLCNGHTTSMDVLWTGTPV+TLPGETLASRVAASQLATLGCPELIA + +EYQDI
Sbjct: 931  ICLDTPLCNGHTTSMDVLWTGTPVITLPGETLASRVAASQLATLGCPELIANSREEYQDI 990

Query: 654  AIRLGTDRDY 663
            AIRLGTD++Y
Sbjct: 991  AIRLGTDKEY 1000

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023889|ref|XP_002432363.1| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, putative [Pediculus humanus corporis] gi|212517786|gb|EEB19625.1| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, putative [Pediculus humanus corporis]

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/368 (64%), Positives = 265/368 (72%), Gaps = 66/368 (17%)

Query: 322 FQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKE 381
            QVMWLGYPGTSGAS+MDY+ITD VTSPL LA QYSEKLA+MP TYFIGDH QMFPHLK 
Sbjct: 661 IQVMWLGYPGTSGASFMDYLITDVVTSPLELAHQYSEKLAYMPHTYFIGDHKQMFPHLKA 720

Query: 382 RFIVSGKYSEKLAFMPDTYFIG--DHNQMFPH--LKE-RFIVSGKT-------------- 422
           R I++ K + K     +   I   D + +  H  +KE R +V+ +T              
Sbjct: 721 RVILADKNTSKKDLADNVAVINATDLSPIIEHTEIKEIRELVATETEPKLEISLKVAELP 780

Query: 423 -------MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDA 475
                  MIASGQ+QTSVNGIV+QNGLATNQTN K ATGEEVPQSIVIT+RQQY LP+DA
Sbjct: 781 TTTPIENMIASGQIQTSVNGIVVQNGLATNQTNNKAATGEEVPQSIVITTRQQYNLPDDA 840

Query: 476 IVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSAST 535
           +VYCNFNQLYKIDP TLQMW+N+LK VPN+ILWLL+FPAVGE                  
Sbjct: 841 VVYCNFNQLYKIDPITLQMWMNILKHVPNAILWLLRFPAVGE------------------ 882

Query: 536 SIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC 595
                                 +NI ATAQ LG+   RILFSNVAAKEEHVRRGQLADVC
Sbjct: 883 ----------------------SNIHATAQQLGVSPARILFSNVAAKEEHVRRGQLADVC 920

Query: 596 LDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAI 655
           LDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR+ ++YQDIAI
Sbjct: 921 LDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARSRQDYQDIAI 980

Query: 656 RLGTDRDY 663
           RLGTDR+Y
Sbjct: 981 RLGTDREY 988

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	673
UNIPROTKB|F1NX56	1035	OGT "Uncharacterized protein"	0.365	0.237	0.568	3.7e-144
RGD|62060	1036	Ogt "O-linked N-acetylglucosam	0.365	0.237	0.565	4.7e-143
UNIPROTKB|A5D7G1	1036	OGT "OGT protein" [Bos taurus	0.365	0.237	0.565	6.1e-143
MGI|MGI:1339639	1046	Ogt "O-linked N-acetylglucosam	0.365	0.235	0.565	6.1e-143
UNIPROTKB|O15294	1046	OGT "UDP-N-acetylglucosamine--	0.365	0.235	0.565	7.7e-143
UNIPROTKB|F1RSV2	1046	OGT "UDP-N-acetylglucosamine--	0.365	0.235	0.565	7.7e-143
UNIPROTKB|P81436	1046	OGT "UDP-N-acetylglucosamine--	0.365	0.235	0.565	7.7e-143
UNIPROTKB|E2QSQ5	1046	OGT "Uncharacterized protein"	0.365	0.235	0.565	1.6e-142
UNIPROTKB|Q27HV0	1046	OGT "UDP-N-acetylglucosamine--	0.365	0.235	0.565	2e-142
ZFIN|ZDB-GENE-030131-9631	1062	ogt.1 "O-linked N-acetylglucos	0.365	0.231	0.568	2.9e-142

UNIPROTKB|F1NX56 OGT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 681 (244.8 bits), Expect = 3.7e-144, Sum P(3) = 3.7e-144
 Identities = 157/276 (56%), Positives = 183/276 (66%)

Query:     9 YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
             Y +AIE QPNF  A+ NL      +G+               PNF DAY NL N LKE  
Sbjct:   170 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA- 228

Query:    54 QINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
                +  +    Y R   L+P + +  G ++  +       L+      + ++ +E     
Sbjct:   229 --RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRA-IE----- 277

Query:   112 LSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEAT 170
             L P     +  + + L     V+EAEECYNTALRLCPTHADSLNNLANIKREQG IEEA 
Sbjct:   278 LQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAV 337

Query:   171 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230
             RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSNMGNTLKE
Sbjct:   338 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 397

Query:   231 MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
             MQD+QGALQCY+RAIQINP FADAHSNLASIHKDSG
Sbjct:   398 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 433

GO:0000123 "histone acetyltransferase complex" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

RGD|62060 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase" [Rattus norvegicus (taxid:10116)]

 Score = 678 (243.7 bits), Expect = 4.7e-143, Sum P(3) = 4.7e-143
 Identities = 156/276 (56%), Positives = 183/276 (66%)

Query:     9 YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
             Y +AIE QPNF  A+ NL      +G+               PNF DAY NL N LKE  
Sbjct:   170 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA- 228

Query:    54 QINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
                +  +    Y R   L+P + +  G ++  +       L+      + ++ +E     
Sbjct:   229 --RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRA-IE----- 277

Query:   112 LSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEAT 170
             L P     +  + + L     V+EAE+CYNTALRLCPTHADSLNNLANIKREQG IEEA 
Sbjct:   278 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 337

Query:   171 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230
             RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSNMGNTLKE
Sbjct:   338 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 397

Query:   231 MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
             MQD+QGALQCY+RAIQINP FADAHSNLASIHKDSG
Sbjct:   398 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 433

GO:0000123 "histone acetyltransferase complex" evidence=IEA;ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA;ISO;ISS

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO;ISS

GO:0006110 "regulation of glycolysis" evidence=IEA;ISO;ISS

GO:0006493 "protein O-linked glycosylation" evidence=ISO;IDA

GO:0006917 "induction of apoptosis" evidence=IEA;ISO;ISS

GO:0008047 "enzyme activator activity" evidence=IEA;ISO

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=ISO;IDA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA;ISO

GO:0032868 "response to insulin stimulus" evidence=IEA;ISO

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA;ISO

GO:0042277 "peptide binding" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO;ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISO;ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISO;ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA;ISO;ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA;ISO;ISS

GO:0045862 "positive regulation of proteolysis" evidence=IEA;ISO;ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA;ISO

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA;ISO;ISS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA;ISO;ISS

GO:0048029 "monosaccharide binding" evidence=IDA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA;ISO

GO:0070207 "protein homotrimerization" evidence=IDA

GO:0070688 "MLL5-L complex" evidence=IEA;ISO

GO:0071300 "cellular response to retinoic acid" evidence=IEA;ISO

GO:0080182 "histone H3-K4 trimethylation" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|A5D7G1 OGT "OGT protein" [Bos taurus (taxid:9913)]

 Score = 678 (243.7 bits), Expect = 6.1e-143, Sum P(3) = 6.1e-143
 Identities = 156/276 (56%), Positives = 183/276 (66%)

Query:     9 YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
             Y +AIE QPNF  A+ NL      +G+               PNF DAY NL N LKE  
Sbjct:   170 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA- 228

Query:    54 QINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
                +  +    Y R   L+P + +  G ++  +       L+      + ++ +E     
Sbjct:   229 --RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRA-IE----- 277

Query:   112 LSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEAT 170
             L P     +  + + L     V+EAE+CYNTALRLCPTHADSLNNLANIKREQG IEEA 
Sbjct:   278 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 337

Query:   171 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230
             RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSNMGNTLKE
Sbjct:   338 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 397

Query:   231 MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
             MQD+QGALQCY+RAIQINP FADAHSNLASIHKDSG
Sbjct:   398 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 433

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0000123 "histone acetyltransferase complex" evidence=IEA

MGI|MGI:1339639 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)" [Mus musculus (taxid:10090)]

 Score = 678 (243.7 bits), Expect = 6.1e-143, Sum P(3) = 6.1e-143
 Identities = 156/276 (56%), Positives = 183/276 (66%)

Query:     9 YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
             Y +AIE QPNF  A+ NL      +G+               PNF DAY NL N LKE  
Sbjct:   180 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA- 238

Query:    54 QINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
                +  +    Y R   L+P + +  G ++  +       L+      + ++ +E     
Sbjct:   239 --RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRA-IE----- 287

Query:   112 LSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEAT 170
             L P     +  + + L     V+EAE+CYNTALRLCPTHADSLNNLANIKREQG IEEA 
Sbjct:   288 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 347

Query:   171 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230
             RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSNMGNTLKE
Sbjct:   348 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 407

Query:   231 MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
             MQD+QGALQCY+RAIQINP FADAHSNLASIHKDSG
Sbjct:   408 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 443

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0003824 "catalytic activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISO

GO:0005622 "intracellular" evidence=TAS

GO:0005634 "nucleus" evidence=ISO;TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006493 "protein O-linked glycosylation" evidence=ISO;ISS;IDA;TAS

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0008047 "enzyme activator activity" evidence=ISO

GO:0008080 "N-acetyltransferase activity" evidence=TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=ISO

GO:0032868 "response to insulin stimulus" evidence=ISO

GO:0035020 "regulation of Rac protein signal transduction" evidence=ISO

GO:0042277 "peptide binding" evidence=ISO

GO:0043085 "positive regulation of catalytic activity" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0045862 "positive regulation of proteolysis" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=ISO

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=ISO

GO:0048029 "monosaccharide binding" evidence=ISO

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISO

GO:0070207 "protein homotrimerization" evidence=ISO

GO:0070688 "MLL5-L complex" evidence=ISO

GO:0071300 "cellular response to retinoic acid" evidence=ISO

GO:0080182 "histone H3-K4 trimethylation" evidence=ISO

UNIPROTKB|O15294 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Homo sapiens (taxid:9606)]

 Score = 678 (243.7 bits), Expect = 7.7e-143, Sum P(3) = 7.7e-143
 Identities = 156/276 (56%), Positives = 183/276 (66%)

Query:     9 YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
             Y +AIE QPNF  A+ NL      +G+               PNF DAY NL N LKE  
Sbjct:   180 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA- 238

Query:    54 QINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
                +  +    Y R   L+P + +  G ++  +       L+      + ++ +E     
Sbjct:   239 --RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRA-IE----- 287

Query:   112 LSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEAT 170
             L P     +  + + L     V+EAE+CYNTALRLCPTHADSLNNLANIKREQG IEEA 
Sbjct:   288 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 347

Query:   171 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230
             RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSNMGNTLKE
Sbjct:   348 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 407

Query:   231 MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
             MQD+QGALQCY+RAIQINP FADAHSNLASIHKDSG
Sbjct:   408 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 443

GO:0006915 "apoptotic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0045862 "positive regulation of proteolysis" evidence=IDA

GO:0006493 "protein O-linked glycosylation" evidence=IMP;IDA

GO:0070688 "MLL5-L complex" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IDA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IDA

GO:0032868 "response to insulin stimulus" evidence=IDA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP;IDA

GO:0080182 "histone H3-K4 trimethylation" evidence=IMP

GO:0006110 "regulation of glycolysis" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0007584 "response to nutrient" evidence=TAS

GO:0008375 "acetylglucosaminyltransferase activity" evidence=TAS

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IMP

GO:0071300 "cellular response to retinoic acid" evidence=IMP

GO:0043085 "positive regulation of catalytic activity" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|F1RSV2 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)]

 Score = 678 (243.7 bits), Expect = 7.7e-143, Sum P(3) = 7.7e-143
 Identities = 156/276 (56%), Positives = 183/276 (66%)

Query:     9 YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
             Y +AIE QPNF  A+ NL      +G+               PNF DAY NL N LKE  
Sbjct:   180 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA- 238

Query:    54 QINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
                +  +    Y R   L+P + +  G ++  +       L+      + ++ +E     
Sbjct:   239 --RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRA-IE----- 287

Query:   112 LSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEAT 170
             L P     +  + + L     V+EAE+CYNTALRLCPTHADSLNNLANIKREQG IEEA 
Sbjct:   288 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 347

Query:   171 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230
             RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSNMGNTLKE
Sbjct:   348 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 407

Query:   231 MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
             MQD+QGALQCY+RAIQINP FADAHSNLASIHKDSG
Sbjct:   408 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 443

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0000123 "histone acetyltransferase complex" evidence=IEA

UNIPROTKB|P81436 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Oryctolagus cuniculus (taxid:9986)]

 Score = 678 (243.7 bits), Expect = 7.7e-143, Sum P(3) = 7.7e-143
 Identities = 156/276 (56%), Positives = 183/276 (66%)

Query:     9 YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
             Y +AIE QPNF  A+ NL      +G+               PNF DAY NL N LKE  
Sbjct:   180 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA- 238

Query:    54 QINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
                +  +    Y R   L+P + +  G ++  +       L+      + ++ +E     
Sbjct:   239 --RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRA-IE----- 287

Query:   112 LSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEAT 170
             L P     +  + + L     V+EAE+CYNTALRLCPTHADSLNNLANIKREQG IEEA 
Sbjct:   288 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 347

Query:   171 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230
             RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSNMGNTLKE
Sbjct:   348 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 407

Query:   231 MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
             MQD+QGALQCY+RAIQINP FADAHSNLASIHKDSG
Sbjct:   408 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 443

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0006110 "regulation of glycolysis" evidence=ISS

GO:0006493 "protein O-linked glycosylation" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

UNIPROTKB|E2QSQ5 OGT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 678 (243.7 bits), Expect = 1.6e-142, Sum P(3) = 1.6e-142
 Identities = 156/276 (56%), Positives = 183/276 (66%)

Query:     9 YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
             Y +AIE QPNF  A+ NL      +G+               PNF DAY NL N LKE  
Sbjct:   180 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA- 238

Query:    54 QINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
                +  +    Y R   L+P + +  G ++  +       L+      + ++ +E     
Sbjct:   239 --RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRA-IE----- 287

Query:   112 LSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEAT 170
             L P     +  + + L     V+EAE+CYNTALRLCPTHADSLNNLANIKREQG IEEA 
Sbjct:   288 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 347

Query:   171 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230
             RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSNMGNTLKE
Sbjct:   348 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 407

Query:   231 MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
             MQD+QGALQCY+RAIQINP FADAHSNLASIHKDSG
Sbjct:   408 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 443

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0000123 "histone acetyltransferase complex" evidence=IEA

UNIPROTKB|Q27HV0 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)]

 Score = 678 (243.7 bits), Expect = 2.0e-142, Sum P(3) = 2.0e-142
 Identities = 156/276 (56%), Positives = 183/276 (66%)

Query:     9 YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
             Y +AIE QPNF  A+ NL      +G+               PNF DAY NL N LKE  
Sbjct:   180 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA- 238

Query:    54 QINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
                +  +    Y R   L+P + +  G ++  +       L+      + ++ +E     
Sbjct:   239 --RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRA-IE----- 287

Query:   112 LSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEAT 170
             L P     +  + + L     V+EAE+CYNTALRLCPTHADSLNNLANIKREQG IEEA 
Sbjct:   288 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 347

Query:   171 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230
             RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSNMGNTLKE
Sbjct:   348 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 407

Query:   231 MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
             MQD+QGALQCY+RAIQINP FADAHSNLASIHKDSG
Sbjct:   408 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 443

GO:0006110 "regulation of glycolysis" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=ISS

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0045862 "positive regulation of proteolysis" evidence=ISS

GO:0006493 "protein O-linked glycosylation" evidence=ISS

ZFIN|ZDB-GENE-030131-9631 ogt.1 "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 1" [Danio rerio (taxid:7955)]

 Score = 679 (244.1 bits), Expect = 2.9e-142, Sum P(3) = 2.9e-142
 Identities = 157/276 (56%), Positives = 183/276 (66%)

Query:     9 YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
             Y +AIE QPNF  A+ NL      +G+               PNF DAY NL N LKE  
Sbjct:   180 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA- 238

Query:    54 QINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
                +  +    Y R   L+P + +  G ++  +       L+      + ++ +E     
Sbjct:   239 --RIFDRAVAGYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRA-IE----- 287

Query:   112 LSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEAT 170
             L P     +  + + L     VSEAEECYNTALRLCPTHADSLNNLANIKREQG IEEA 
Sbjct:   288 LQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAV 347

Query:   171 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230
             +LY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSNMGNTLKE
Sbjct:   348 QLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 407

Query:   231 MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
             MQD+QGALQCY+RAIQINP FADAHSNLASIHKDSG
Sbjct:   408 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 443

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=IMP;IDA

GO:0006493 "protein O-linked glycosylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q27HV0	OGT1_PIG	2, ., 4, ., 1, ., 2, 5, 5	0.5386	0.4531	0.2915	yes	N/A
O15294	OGT1_HUMAN	2, ., 4, ., 1, ., 2, 5, 5	0.5413	0.4531	0.2915	yes	N/A
Q8CGY8	OGT1_MOUSE	2, ., 4, ., 1, ., 2, 5, 5	0.5413	0.4531	0.2915	yes	N/A
P81436	OGT1_RABIT	2, ., 4, ., 1, ., 2, 5, 5	0.5413	0.4531	0.2915	yes	N/A
P56558	OGT1_RAT	2, ., 4, ., 1, ., 2, 5, 5	0.5386	0.4531	0.2944	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	673
pfam13844	468	pfam13844, Glyco_transf_41, Glycosyl transferase f	1e-173
COG3914	620	COG3914, Spy, Predicted O-linked N-acetylglucosami	3e-40
pfam13844	468	pfam13844, Glyco_transf_41, Glycosyl transferase f	5e-26
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-22
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-18
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-18
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-13
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	9e-12
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-11
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-11
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-11
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-10
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	2e-09
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-09
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	1e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-07
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-07
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	3e-07
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-07
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	1e-06
COG3914	620	COG3914, Spy, Predicted O-linked N-acetylglucosami	2e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	8e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-05
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	1e-05
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	1e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-05
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	4e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-05
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	5e-05
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	5e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	6e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	7e-05
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	1e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	2e-04
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	3e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-04
pfam13374	42	pfam13374, TPR_10, Tetratricopeptide repeat	7e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.001
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.001
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	0.001
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	0.002
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	0.002
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.003

>gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41

 Score =  502 bits (1294), Expect = e-173
 Identities = 216/375 (57%), Positives = 255/375 (68%), Gaps = 73/375 (19%)

Query: 323 QVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKER 382
           QVMWLGYPGTSGA++MDYIITD+VTSP+ LA QYSEKLA+MP T+FIGDH QMFPHLKER
Sbjct: 104 QVMWLGYPGTSGATFMDYIITDSVTSPMELADQYSEKLAYMPHTFFIGDHAQMFPHLKER 163

Query: 383 FIVSGKYSEK----------------LAFMPDTYFIGDHNQMFPHLKERFIVSG------ 420
            IV  K + +                L  + D   + +  ++     +R  VS       
Sbjct: 164 VIVKFKSNGRIYDNSIVINGIDLKPLLDKLEDVKIVRE--KVVDAGSKRDSVSTEVNLPV 221

Query: 421 ---------KTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGL 471
                      MI +GQ+Q ++NG+ +QNGLAT QTN K ATGEEVP++I++T+RQQYGL
Sbjct: 222 IEVPTTEPVIQMINTGQIQITINGVPIQNGLATTQTNNKAATGEEVPRTIIVTTRQQYGL 281

Query: 472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRP 531
           P+DAIVYCNFNQLYKIDPSTLQMWVN                                  
Sbjct: 282 PDDAIVYCNFNQLYKIDPSTLQMWVN---------------------------------- 307

Query: 532 SASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL 591
                 +LK VPNS+LWLL+FPAVGEANIQA AQ +GL   RI+FSNVA KEEHVRRGQL
Sbjct: 308 ------ILKRVPNSVLWLLRFPAVGEANIQAYAQEMGLPPRRIVFSNVAPKEEHVRRGQL 361

Query: 592 ADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQ 651
           ADVCLDTPLCNGHTT MDVLW GTP+VT+P ETLASRVAASQL TLGCPELIA+  +EY+
Sbjct: 362 ADVCLDTPLCNGHTTGMDVLWAGTPMVTMPLETLASRVAASQLTTLGCPELIAKDRQEYE 421

Query: 652 DIAIRLGTDRDYCEK 666
           DIA++LGTDR+Y  K
Sbjct: 422 DIAVKLGTDREYLRK 436

This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468

>gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

 Score =  156 bits (395), Expect = 3e-40
 Identities = 126/564 (22%), Positives = 187/564 (33%), Gaps = 177/564 (31%)

Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL-----TDA 203
           H      L    +  G   EA     +A+++ P++      L +  Q+Q        T+ 
Sbjct: 141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNL 200

Query: 204 LLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
           L      + I        ++  + LK +      L+  S+       F     N+    K
Sbjct: 201 LSQLALFLGIYGFSLAYLAD--DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGK 258

Query: 264 DSGKRGFFIRTDLNS---AYFWLLLLDAHSN----------------------LASIHK- 297
               R  ++ +DL S    +    + + H                         A++ K 
Sbjct: 259 R--LRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKW 316

Query: 298 -DSVVMSLLQIIHEFI-----VGFDLTFY-------LF-------QVMWLGYPGTSGASY 337
                M   +I +        +  DL  +       +F       QV WLGYP T+G+  
Sbjct: 317 YPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPIQVSWLGYPATTGSPN 376

Query: 338 MDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMP 397
           MDY I+D                      Y +    +              YSEKL  +P
Sbjct: 377 MDYFISD---------------------PYTVPPTAE------------EYYSEKLWRLP 403

Query: 398 DTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEV 457
             Y   D               G   +                                 
Sbjct: 404 QCYQPVD---------------GFEPVTPP------------------------------ 418

Query: 458 PQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGE 517
                  SR Q GLPEDA+V+C FN  +KI P    +W+ +L AVPNS+L L       E
Sbjct: 419 ------PSRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE 472

Query: 518 ANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFS 577
            N                                      A ++  A+  G+D  R+ F 
Sbjct: 473 IN--------------------------------------ARLRDLAEREGVDSERLRFL 494

Query: 578 NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATL 637
             A  E+H  R  +AD+ LDT    GHTT+ D LW G PV+T  GE  ASR  AS     
Sbjct: 495 PPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNA 554

Query: 638 GCPELIARTHKEYQDIAIRLGTDR 661
           G PEL+A +  +Y + A+  G+DR
Sbjct: 555 GIPELVADSRADYVEKAVAFGSDR 578

Length = 620

>gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41

 Score =  111 bits (279), Expect = 5e-26
 Identities = 40/46 (86%), Positives = 45/46 (97%)

Query: 75  IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF 120
           +RIGYVSSDFGNHPTSHLMQS+PGMHN+S+VE+FCYALSPDDGT F
Sbjct: 1   LRIGYVSSDFGNHPTSHLMQSIPGMHNRSKVEVFCYALSPDDGTNF 46

This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 90.1 bits (224), Expect = 8e-22
 Identities = 35/97 (36%), Positives = 58/97 (59%)

Query: 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
           L NL N+  + G  +EA   Y KALE+ P+ A A+ NLA+   + GK  +AL  Y++A+ 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
           + P  A AY N+G    ++   + AL+ Y +A++++P
Sbjct: 63  LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 80.9 bits (200), Expect = 2e-18
 Identities = 34/86 (39%), Positives = 47/86 (54%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
              EA E Y  AL L P +AD+  NLA    + G  EEA   Y KALE+ P+ A A+ NL
Sbjct: 15  DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNL 74

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPS 216
                + GK  +AL  Y++A+ + P+
Sbjct: 75  GLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 79.0 bits (195), Expect = 7e-18
 Identities = 24/79 (30%), Positives = 45/79 (56%)

Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
           NL ++  + G   +AL +Y++A+ + P  ADAY N+     ++   + AL+ Y +A++++
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64

Query: 249 PGFADAHSNLASIHKDSGK 267
           P  A A+ NL   +   GK
Sbjct: 65  PDNAKAYYNLGLAYYKLGK 83

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 64.3 bits (157), Expect = 4e-13
 Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM-QDIQGALQCYS 242
           A A  NL + L + G   +A+  Y++A+ + P  A+AY N+     ++ +D + AL+   
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 243 RAIQINP 249
           +A++++P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 66.0 bits (159), Expect = 9e-12
 Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 134 EAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA-AHSN 189
           EA E Y  AL L P     A++L  L  +    G  EEA  L  KAL++ P+  A A  N
Sbjct: 148 EALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLN 207

Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
           L  +  + GK  +AL +Y++A+ + P  A+A  N+   L E+   + AL+   +A++++P
Sbjct: 208 LGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 65.6 bits (158), Expect = 1e-11
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 134 EAEECYNTALRLCPTHADSLNNLA-NIKREQGYIEEATRLYLKALEVFP---EFAAAHSN 189
           EA E    AL L P    +   LA     E G  EEA  LY KALE+ P   E A A   
Sbjct: 113 EALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLA 172

Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPS-FADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
           L ++L+  G+  +AL   ++A+++ P   A+A  N+G    ++   + AL+ Y +A++++
Sbjct: 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232

Query: 249 PGFADAHSNLASIHKDSGK 267
           P  A+A  NLA +  + G+
Sbjct: 233 PDNAEALYNLALLLLELGR 251

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 63.7 bits (153), Expect = 6e-11
 Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 7/148 (4%)

Query: 127 LLLIQVSEAEECYNTALRLC--PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA 184
           L L ++ EA E    AL L   P  A++L NL  +    G  EEA  L  KAL + P+  
Sbjct: 70  LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD 129

Query: 185 AAHSNLA-SVLQQQGKLTDALLHYKEAIRIQPS---FADAYSNMGNTLKEMQDIQGALQC 240
            A + LA   L + G   +AL  Y++A+ + P     A+A   +G  L+ +   + AL+ 
Sbjct: 130 LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189

Query: 241 YSRAIQINPG-FADAHSNLASIHKDSGK 267
             +A+++NP   A+A  NL  ++   GK
Sbjct: 190 LEKALKLNPDDDAEALLNLGLLYLKLGK 217

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 65.5 bits (160), Expect = 6e-11
 Identities = 30/129 (23%), Positives = 52/129 (40%)

Query: 127 LLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA 186
           L L Q+  A++ Y  AL + P    +   LA +   +   +EA  L  + L   P    A
Sbjct: 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195

Query: 187 HSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ 246
                 +L   G +  AL  Y++AI ++P+       +   L E  + + A +     ++
Sbjct: 196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK 255

Query: 247 INPGFADAH 255
             P    AH
Sbjct: 256 KAPNSPLAH 264

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVF-------PEFAAAHSNLASVLQQQGKLTD 202
           A +LNNLA + R  G  +EA  L  KALE+        PE A A +NLA +    G   +
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64

Query: 203 ALLHYKEAIRIQPS 216
           AL + ++A+ ++ +
Sbjct: 65  ALEYLEKALALREA 78

Length = 78

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK-LTDALLHYK 208
           A++L NL N   + G  +EA   Y KALE+ P+ A A+ NLA    + GK   +AL   +
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 209 EAIRIQP 215
           +A+ + P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 55.0 bits (133), Expect = 7e-10
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR 268
           A+A  N+GN L ++ D   A++ Y +A++++P  A+A+ NLA  +   GK 
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKD 53

Length = 69

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 2/131 (1%)

Query: 141 TALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL 200
            AL   P    +   LA   ++ G +E+A   + +AL + P      +N  + L QQGK 
Sbjct: 56  KALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY 115

Query: 201 TDALLHYKEAIRIQ--PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
             A+  +++AI     P  A +  N G    +  D   A +  +RA+QI+P   ++   L
Sbjct: 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175

Query: 259 ASIHKDSGKRG 269
           A ++   G+  
Sbjct: 176 AELYYLRGQYK 186

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 7/76 (9%)

Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ-------PSFADAYSNMGNTLKEMQD 233
           P+ AAA +NLA VL++ G   +AL   ++A+ +        P  A A +N+      + D
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61

Query: 234 IQGALQCYSRAIQINP 249
              AL+   +A+ +  
Sbjct: 62  YDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
           EQG +E A     KALE  P+   A+  LA   QQ G+L  A   ++ A+ + P+  D  
Sbjct: 43  EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVL 102

Query: 222 SNMGNTLKEMQDIQGALQCYSRAIQIN--PGFADAHSNLASIHKDSGKRG 269
           +N G  L +    + A+Q + +AI+    P  A +  N       +G   
Sbjct: 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 57.4 bits (139), Expect = 2e-08
 Identities = 27/99 (27%), Positives = 43/99 (43%)

Query: 163 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS 222
            G +E A + Y +AL + P    A   LA +   + +  +A     E +   P   DA  
Sbjct: 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALL 197

Query: 223 NMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI 261
             G+ L  + +I+ AL  Y +AI + P        LA+I
Sbjct: 198 LKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATI 236

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 33/184 (17%), Positives = 69/184 (37%), Gaps = 35/184 (19%)

Query: 114 PDDGTTFSYIISVLLLIQ-VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRL 172
           PD+ +  + + ++ L    +++A E +  AL + P    +  NLA I  ++G  ++A + 
Sbjct: 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521

Query: 173 YLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR-------------------- 212
           + K L + P+   A   LA +  + G   +A+   ++A                      
Sbjct: 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581

Query: 213 --------------IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
                           P   +A+  +G       D+  A+  + + + + P  A A   L
Sbjct: 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641

Query: 259 ASIH 262
           A  +
Sbjct: 642 ADAY 645

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 3  DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
          D A++ Y +A+EL P+  DAY NLA A  + G+               P+   AY NL  
Sbjct: 17 DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76

Query: 48 ALKEKGQIN 56
          A  + G+  
Sbjct: 77 AYYKLGKYE 85

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 56.6 bits (137), Expect = 3e-08
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 1/136 (0%)

Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
           +EA +     L+  P  A     LA +   Q   ++A + Y   ++  P+ A   +NLA 
Sbjct: 753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAW 812

Query: 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
           +  +  K   AL + + A+++ P+       +G  L E  +   AL    +A+ I P  A
Sbjct: 813 LYLEL-KDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA 871

Query: 253 DAHSNLASIHKDSGKR 268
               +LA     +G++
Sbjct: 872 AIRYHLALALLATGRK 887

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           +A  N+GN   ++ D   AL+ Y +A++++P  ADA+ NLA+ +   GK
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK 49

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 53.3 bits (126), Expect = 1e-07
 Identities = 50/227 (22%), Positives = 88/227 (38%), Gaps = 7/227 (3%)

Query: 14  ELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGN 73
                  +A   L  AL+ +  PN  +A  NL   L+  G+     +      + LA   
Sbjct: 70  LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE---LLEKALALDP 126

Query: 74  RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVS 133
              +       G      L      +    +       L+       +    +  L +  
Sbjct: 127 DPDLAEALLALGAL--YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184

Query: 134 EAEECYNTALRLCP-THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
           EA E    AL+L P   A++L NL  +  + G  EEA   Y KALE+ P+ A A  NLA 
Sbjct: 185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL 244

Query: 193 VLQQQGKLTDALLHYKEAIRIQPS-FADAYSNMGNTLKEMQDIQGAL 238
           +L + G+  +AL   ++A+ + P  +    + +    + ++ ++ A 
Sbjct: 245 LLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALELLEKAD 291

Length = 291

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 30/140 (21%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 111 ALSPDDGTTFSYIISVLLLIQV---SEAEECYNTALRLCPTHADSLNNLANIKREQGYIE 167
           ++  D   T SYI    + +++    +AEE ++ AL+L     D   + A +   +G   
Sbjct: 357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416

Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
           +A + Y K++++ P+F  +H  L     ++G +  ++  ++   +  P   D Y+  G  
Sbjct: 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGEL 476

Query: 228 LKEMQDIQGALQCYSRAIQI 247
           L +      A++ +  AI++
Sbjct: 477 LLDQNKFDEAIEKFDTAIEL 496

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALE--VFPEFAAAHS 188
           +   A+E Y  AL L P + D LNN       QG  EEA + + +AL    + E +    
Sbjct: 84  ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLE 143

Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
           NL     + G+   A  + K A+ + P F  A   +     +  D   A     R
Sbjct: 144 NLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198

Length = 250

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 18/61 (29%), Positives = 25/61 (40%)

Query: 156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
           LA      G  +EA      AL  +P  A A   L   L +QG+L +A    + A+   P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 216 S 216
            
Sbjct: 63  D 63

Length = 65

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 3  DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
          D AI+ Y +A+EL P+  +AY NLA A  + G+ ++ +A  +L  AL+
Sbjct: 20 DEAIEAYEKALELDPDNAEAYYNLALAYLKLGK-DYEEALEDLEKALE 66

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 52.0 bits (125), Expect = 9e-07
 Identities = 63/276 (22%), Positives = 102/276 (36%), Gaps = 48/276 (17%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKP 61
           I+LA+  YR+AI L+PN       LA  L E G+    + +   A+AL +K         
Sbjct: 209 IELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH---ADALLKK--------- 256

Query: 62  PYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNK---SRVEIFCYALSPDDGT 118
                                   N P +H ++++     K      E    AL      
Sbjct: 257 ----------------------APNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--- 291

Query: 119 TFSYIISVLL-------LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATR 171
              Y+ ++LL       L  + +A +  N  L+  P    +   LA+I+   G ++EA  
Sbjct: 292 -PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIA 350

Query: 172 LYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM 231
               AL + P+  AA S L       G    A  +  +A  + P  A A + +G +    
Sbjct: 351 TLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ 410

Query: 232 QDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
            D   A+     A Q++P    A   L   +  SG+
Sbjct: 411 GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 44.7 bits (107), Expect = 1e-06
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
           A A  N+GN   ++     AL+ Y +A+++NP  
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 37  NFPDAYCNLANALKEKGQIN-VLHKPPYKYTRELAP----GNRIRIGYVSSDFGNHPTSH 91
              D          +  +I         ++          G R+R+GY+SSD  +H    
Sbjct: 217 YLADDPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAVGF 276

Query: 92  LMQSVPGMHNKSRVEIFCYALSP--DDGTT 119
           L++ V   H++ + E+F Y+L P   D   
Sbjct: 277 LLRWVFEYHDRDKFEVFAYSLGPPHTDALQ 306

Length = 620

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 50/242 (20%), Positives = 92/242 (38%), Gaps = 30/242 (12%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQPN--------FPDAYCNLANALKEKGQIN 56
           AI + +RA+EL+P+  +A   LA  L    +              +   A   + +G + 
Sbjct: 654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY 713

Query: 57  VLHK------PPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY 110
           +  K        Y+   + AP ++  I             H      G   ++   +  +
Sbjct: 714 LRQKDYPAAIQAYRKALKRAPSSQNAIKL-----------HRALLASGNTAEAVKTLEAW 762

Query: 111 ALS--PDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE 167
            L   P+D    + +  + L      +A + Y T ++  P +A  LNNLA +  E     
Sbjct: 763 -LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDP 820

Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
            A     +AL++ P   A    L  +L ++G+   AL   ++A+ I P  A    ++   
Sbjct: 821 RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880

Query: 228 LK 229
           L 
Sbjct: 881 LL 882

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 34/171 (19%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
           +  EA    +  L   P + D+L    ++    G IE A   Y KA+ + P   A    L
Sbjct: 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLAL 233

Query: 191 ASVL----------------------------------QQQGKLTDALLHYKEAIRIQPS 216
           A++L                                   Q+    DA    ++A++  P 
Sbjct: 234 ATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE 293

Query: 217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           +  A    G +  ++ +++ A Q  ++ ++  P    A   LASI    G+
Sbjct: 294 YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR 344

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 114 PDDGTTFSYIISVLLLI-QVSEAEECYNTALRLC-------PTHADSLNNLANIKREQGY 165
           PD     + +  VL  +    EA E    AL L        P  A +LNNLA +    G 
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61

Query: 166 IEEATRLYLKALEVFPE 182
            +EA     KAL +   
Sbjct: 62  YDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 5/160 (3%)

Query: 111 ALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCP--THADSLNNLANIKREQGYIE 167
            L P++    + + IS L     SEA     TA +L P    AD L  L+ ++  Q   +
Sbjct: 391 ELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ--FD 448

Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
           +A     K  +  P+ A+ H+ L ++   +G L  A   +++A+ I+P F  A +N+   
Sbjct: 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI 508

Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
             +  +   A+Q + + + I+P    A   LA ++  +G 
Sbjct: 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN 548

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 135 AEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL 194
           A++    AL   P++  +    A+  ++ G  + A   Y KAL + P      +N  + L
Sbjct: 54  AKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113

Query: 195 QQQGKLTDALLHYKEAIRIQPSF---ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
             QG+  +A+  ++ A+   P++   +D   N+G    +      A +   RA++++P F
Sbjct: 114 CAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172

Query: 252 ADAHSNLASIHKDSGKRG 269
             A   LA +H  +G   
Sbjct: 173 PPALLELARLHYKAGDYA 190

Length = 250

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
           A+A  N+GN   ++ D   AL+ Y +A++++P  
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGY-IEEATRLYLKALEVFP 181
           EA E Y  AL L P +A++  NLA    + G   EEA     KALE+ P
Sbjct: 21  EAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 44/158 (27%), Positives = 63/158 (39%), Gaps = 1/158 (0%)

Query: 111 ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
            L PDD    S +    L L    +A E    A  L P +A +   L   K  QG   EA
Sbjct: 357 GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEA 416

Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
                 A ++ PE   A   L     + G+   AL   K+  + QP  A  ++ +G    
Sbjct: 417 IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL 476

Query: 230 EMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
              D+  A + + +A+ I P F  A +NLA I    G 
Sbjct: 477 GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN 514

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 6/150 (4%)

Query: 123 IISVLLLIQ-----VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKAL 177
              +L   Q     +++A   +   L L P  A +L  LA+         +A     +AL
Sbjct: 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL 662

Query: 178 EVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA 237
           E+ P+   A   LA +L    +   A    K   +  P  A  +   G+     +D   A
Sbjct: 663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722

Query: 238 LQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           +Q Y +A++  P  +     L      SG 
Sbjct: 723 IQAYRKALKRAPS-SQNAIKLHRALLASGN 751

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALE--VFPEFAAAHS 188
           ++ +AE+ +  AL L P + D LNN      +QG  E+A + + +A+E  ++P+ A +  
Sbjct: 80  ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLE 139

Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224
           N      + G    A  +   A++I P   ++   +
Sbjct: 140 NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEK 52
           + A++ Y +A+EL P+   AY NL  A  + G+          A  L   
Sbjct: 51  EEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 9  YRRAIELQPNFPDAYCNLANALKEKGQPN 37
          Y +A+EL PN  +AY NLA  L   GQ +
Sbjct: 2  YEKALELDPNNAEAYYNLALLLLNLGQYD 30

Length = 34

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 16/161 (9%)

Query: 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
           +   E             A  L  LA   R +   ++A  LY K L+  P        LA
Sbjct: 73  IDVCERY-----SPVGLPARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLA 127

Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
             L   GK  +AL + KE +   P+ A  Y  +   L+  +D   ALQ + +A+ + P  
Sbjct: 128 LTLADAGKDAEALKYLKEYVARFPTDAARYEALAYVLRAAEDHLDALQAWQQALTLEPD- 186

Query: 252 ADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNL 292
                     + ++    + I T L +      L   + +L
Sbjct: 187 ----------NPEAALELYRILTRLGAPPAAARLAKQYPDL 217

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 14/61 (22%), Positives = 23/61 (37%)

Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
           LA    + G   +AL   + A+   P  A+A   +G  L     +  A      A+  +P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 250 G 250
            
Sbjct: 63  D 63

Length = 65

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 40.1 bits (95), Expect = 7e-05
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
           A A  NL +   + GK  +AL +Y++A+ + P+ 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 18/74 (24%), Positives = 33/74 (44%)

Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
           A     LA    +QG L  A  +  +A+   P    AY  +    +++ +++ A   + R
Sbjct: 31  AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90

Query: 244 AIQINPGFADAHSN 257
           A+ +NP   D  +N
Sbjct: 91  ALTLNPNNGDVLNN 104

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
           A A  NL +   + G   +AL +Y++A+ + P+ 
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 206 HYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239
            Y++A+ + P+ A+AY N+   L  +     ALQ
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34

Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.8 bits (101), Expect = 7e-04
 Identities = 28/138 (20%), Positives = 40/138 (28%), Gaps = 7/138 (5%)

Query: 135 AEECYNTALRLCPTHADSLNNLANIKREQG----YIEEATRLYLKALEVFPEFAAAHSNL 190
           AE+    AL L       L  LA     QG     ++E     L   E     A   +  
Sbjct: 75  AEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDE---GAAELLALR 131

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
                  G+L  A   Y++A+ I P    A   +            A       +  +PG
Sbjct: 132 GLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPG 191

Query: 251 FADAHSNLASIHKDSGKR 268
             DA      +    G  
Sbjct: 192 NVDALLLKGDLLLSLGNI 209

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEV 179
           A SLNNLA   R QG  EEA  L  +AL +
Sbjct: 2   AASLNNLARALRAQGRYEEAEELLEEALAI 31

Length = 42

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 215 PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI-------NPGFADAHSNLASIHKDSGK 267
           P  A A +N+   L+ + D   AL+   +A+++       +P  A A +NLA ++   G 
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61

Length = 78

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 138 CYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
            Y  AL L P +A++  NLA +    G  +EA
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEA 32

Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
           A+A  N+G    ++ D + AL+ Y +A++++P  
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 25/73 (34%), Positives = 34/73 (46%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
              EA      A RL PT  ++ N L     + G  +EA R Y +ALE+ P   +  +NL
Sbjct: 115 NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNL 174

Query: 191 ASVLQQQGKLTDA 203
              L  +G L DA
Sbjct: 175 GMSLLLRGDLEDA 187

Length = 257

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 25/85 (29%), Positives = 41/85 (48%)

Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
           +QG   +A +   KALE  P +  AH   A   Q+ G+   A   Y++A+ + P+  D  
Sbjct: 47  QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL 106

Query: 222 SNMGNTLKEMQDIQGALQCYSRAIQ 246
           +N G  L      + A+Q + RA+ 
Sbjct: 107 NNYGAFLCAQGRPEEAMQQFERALA 131

Length = 250

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 172 LYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL 204
           LY KALE+ P  A A+ NLA +L   G+  +AL
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33

Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
           A A  NL     + G   +AL  Y++A+ + P
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	673
KOG4626|consensus	966		100.0
PF13844	468	Glyco_transf_41: Glycosyl transferase family 41; P	100.0
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	100.0
KOG4626|consensus	966		99.97
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.86
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.85
KOG1126|consensus	638		99.84
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.83
KOG1126|consensus	638		99.81
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.8
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.79
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.79
PRK12370	553	invasion protein regulator; Provisional	99.78
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.77
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.76
KOG0547|consensus	606		99.76
KOG1155|consensus	559		99.75
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.74
KOG1125|consensus	579		99.71
KOG1173|consensus	611		99.7
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.7
KOG1155|consensus	559		99.69
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.69
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.69
KOG0547|consensus	606		99.69
PRK15359	144	type III secretion system chaperone protein SscB;	99.67
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.65
PRK11189	296	lipoprotein NlpI; Provisional	99.65
PRK12370	553	invasion protein regulator; Provisional	99.65
KOG1173|consensus	611		99.65
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.65
KOG0624|consensus	504		99.64
PLN02789	320	farnesyltranstransferase	99.63
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.63
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.61
KOG2002|consensus	1018		99.57
PLN02789	320	farnesyltranstransferase	99.57
KOG1129|consensus	478		99.57
KOG1129|consensus	478		99.55
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.55
KOG2002|consensus	1018		99.55
KOG1125|consensus	579		99.55
KOG0550|consensus	486		99.54
KOG2076|consensus	895		99.54
PRK15359	144	type III secretion system chaperone protein SscB;	99.54
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.53
PRK11189	296	lipoprotein NlpI; Provisional	99.53
KOG0548|consensus	539		99.51
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.48
KOG1174|consensus	564		99.46
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.46
KOG0553|consensus	304		99.46
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.45
KOG4162|consensus	799		99.45
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.45
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.44
KOG0548|consensus	539		99.43
KOG1840|consensus	508		99.41
KOG2003|consensus	840		99.41
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.39
KOG2003|consensus	840		99.38
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.38
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.38
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.38
PRK14574	822	hmsH outer membrane protein; Provisional	99.38
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.37
KOG0553|consensus	304		99.37
KOG0495|consensus	913		99.36
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.35
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.35
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.32
KOG1840|consensus	508		99.32
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.32
KOG4162|consensus	799		99.31
KOG0624|consensus	504		99.29
KOG1174|consensus	564		99.28
PRK14574	822	hmsH outer membrane protein; Provisional	99.26
KOG0495|consensus	913		99.26
PRK15427	406	colanic acid biosynthesis glycosyltransferase WcaL	99.26
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.25
cd03818	396	GT1_ExpC_like This family is most closely related	99.24
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.24
TIGR03449	405	mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino	99.24
KOG3060|consensus	289		99.23
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.22
KOG3060|consensus	289		99.22
KOG0550|consensus	486		99.22
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.21
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.2
cd03821	375	GT1_Bme6_like This family is most closely related	99.19
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.17
KOG2076|consensus	895		99.16
cd03805	392	GT1_ALG2_like This family is most closely related	99.15
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.12
cd03817	374	GT1_UGDG_like This family is most closely related	99.11
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.11
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.11
cd03812	358	GT1_CapH_like This family is most closely related	99.11
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.1
cd04962	371	GT1_like_5 This family is most closely related to	99.1
KOG1156|consensus	700		99.1
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.1
cd05844	367	GT1_like_7 Glycosyltransferases catalyze the trans	99.09
PF00534	172	Glycos_transf_1: Glycosyl transferases group 1; In	99.09
TIGR03088	374	stp2 sugar transferase, PEP-CTERM/EpsH1 system ass	99.08
cd03796	398	GT1_PIG-A_like This family is most closely related	99.07
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.06
PRK15484	380	lipopolysaccharide 1,2-N-acetylglucosaminetransfer	99.06
cd03792	372	GT1_Trehalose_phosphorylase Trehalose phosphorylas	99.06
PRK10307	412	putative glycosyl transferase; Provisional	99.05
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	99.03
cd03816	415	GT1_ALG1_like This family is most closely related	99.03
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.03
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.02
PLN02501	794	digalactosyldiacylglycerol synthase	99.0
cd03813	475	GT1_like_3 This family is most closely related to	99.0
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.0
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.99
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.99
KOG1127|consensus	1238		98.98
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.97
KOG1156|consensus	700		98.97
PLN02949	463	transferase, transferring glycosyl groups	98.97
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.97
KOG1130|consensus	639		98.96
KOG1127|consensus	1238		98.95
cd03806	419	GT1_ALG11_like This family is most closely related	98.94
PLN03218	1060	maturation of RBCL 1; Provisional	98.94
KOG1128|consensus	777		98.94
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.93
PLN02871	465	UDP-sulfoquinovose:DAG sulfoquinovosyltransferase	98.93
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.92
cd03800	398	GT1_Sucrose_synthase This family is most closely r	98.92
cd03801	374	GT1_YqgM_like This family is most closely related	98.92
PLN02939	977	transferase, transferring glycosyl groups	98.92
KOG1130|consensus	639		98.92
cd03799	355	GT1_amsK_like This is a family of GT1 glycosyltran	98.91
cd04949	372	GT1_gtfA_like This family is most closely related	98.91
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.91
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.9
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.89
PLN02846	462	digalactosyldiacylglycerol synthase	98.88
TIGR02918	500	accessory Sec system glycosylation protein GtfA. M	98.88
KOG0543|consensus	397		98.87
cd03820	348	GT1_amsD_like This family is most closely related	98.87
PRK11906	458	transcriptional regulator; Provisional	98.87
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.87
PLN03218	1060	maturation of RBCL 1; Provisional	98.86
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.86
PRK15331	165	chaperone protein SicA; Provisional	98.85
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.85
cd03807	365	GT1_WbnK_like This family is most closely related	98.85
cd03819	355	GT1_WavL_like This family is most closely related	98.85
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.85
cd03794	394	GT1_wbuB_like This family is most closely related	98.84
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.84
cd04946	407	GT1_AmsK_like This family is most closely related	98.84
TIGR03087	397	stp1 sugar transferase, PEP-CTERM/EpsH1 system ass	98.83
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.83
cd03822	366	GT1_ecORF704_like This family is most closely rela	98.83
KOG1128|consensus	777		98.83
PRK05749	425	3-deoxy-D-manno-octulosonic-acid transferase; Revi	98.82
TIGR02149	388	glgA_Coryne glycogen synthase, Corynebacterium fam	98.82
PF13692	135	Glyco_trans_1_4: Glycosyl transferases group 1; PD	98.82
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.82
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.81
cd04951	360	GT1_WbdM_like This family is most closely related	98.81
KOG0543|consensus	397		98.8
PRK11906	458	transcriptional regulator; Provisional	98.8
cd03795	357	GT1_like_4 This family is most closely related to	98.8
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.79
PRK10803	263	tol-pal system protein YbgF; Provisional	98.79
cd03814	364	GT1_like_2 This family is most closely related to	98.77
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.77
PLN02316	1036	synthase/transferase	98.76
TIGR02472	439	sucr_P_syn_N sucrose-phosphate synthase, putative,	98.76
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.76
PLN03077	857	Protein ECB2; Provisional	98.75
PLN03077	857	Protein ECB2; Provisional	98.75
TIGR02468	1050	sucrsPsyn_pln sucrose phosphate synthase/possible	98.75
PHA01633	335	putative glycosyl transferase group 1	98.75
PRK10803	263	tol-pal system protein YbgF; Provisional	98.74
cd03825	365	GT1_wcfI_like This family is most closely related	98.74
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.74
KOG2376|consensus	652		98.73
PRK14098	489	glycogen synthase; Provisional	98.73
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.72
PRK09922	359	UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D	98.71
cd03809	365	GT1_mtfB_like This family is most closely related	98.7
TIGR02470	784	sucr_synth sucrose synthase. This model represents	98.7
cd03798	377	GT1_wlbH_like This family is most closely related	98.68
KOG4234|consensus	271		98.68
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.68
cd03811	353	GT1_WabH_like This family is most closely related	98.67
cd03823	359	GT1_ExpE7_like This family is most closely related	98.66
cd03808	359	GT1_cap1E_like This family is most closely related	98.66
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.66
TIGR02095	473	glgA glycogen/starch synthases, ADP-glucose type.	98.64
PRK14099	485	glycogen synthase; Provisional	98.64
PLN02605	382	monogalactosyldiacylglycerol synthase	98.63
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.63
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.62
PF12688	120	TPR_5: Tetratrico peptide repeat	98.61
PLN02275	371	transferase, transferring glycosyl groups	98.6
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.6
cd04955	363	GT1_like_6 This family is most closely related to	98.6
PRK15331	165	chaperone protein SicA; Provisional	98.59
PRK00654	466	glgA glycogen synthase; Provisional	98.58
PRK13609	380	diacylglycerol glucosyltransferase; Provisional	98.57
KOG1111|consensus	426		98.57
PLN00142	815	sucrose synthase	98.56
PRK13608	391	diacylglycerol glucosyltransferase; Provisional	98.53
KOG4648|consensus	536		98.53
PF13371	73	TPR_9: Tetratricopeptide repeat	98.53
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.53
KOG3785|consensus	557		98.53
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.52
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.52
PF12688	120	TPR_5: Tetratrico peptide repeat	98.52
cd03804	351	GT1_wbaZ_like This family is most closely related	98.51
KOG4340|consensus	459		98.5
PF13371	73	TPR_9: Tetratricopeptide repeat	98.49
PRK00025	380	lpxB lipid-A-disaccharide synthase; Reviewed	98.49
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.48
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.48
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.47
PHA01630	331	putative group 1 glycosyl transferase	98.46
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.46
cd03785	350	GT1_MurG MurG is an N-acetylglucosaminyltransferas	98.45
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.45
cd03802	335	GT1_AviGT4_like This family is most closely relate	98.45
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.44
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.44
KOG4340|consensus	459		98.42
KOG4234|consensus	271		98.41
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.41
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.4
TIGR00215	385	lpxB lipid-A-disaccharide synthase. Lipid-A precur	98.39
cd03791	476	GT1_Glycogen_synthase_DULL1_like This family is mo	98.38
KOG4648|consensus	536		98.38
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.37
PF13512	142	TPR_18: Tetratricopeptide repeat	98.36
cd03788	460	GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a	98.35
KOG3785|consensus	557		98.35
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.34
TIGR01133	348	murG undecaprenyldiphospho-muramoylpentapeptide be	98.32
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.31
PRK00726	357	murG undecaprenyldiphospho-muramoylpentapeptide be	98.3
cd03786	363	GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th	98.3
KOG4555|consensus	175		98.29
KOG3081|consensus	299		98.28
cd04950	373	GT1_like_1 Glycosyltransferases catalyze the trans	98.27
PF13512	142	TPR_18: Tetratricopeptide repeat	98.27
TIGR00236	365	wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras	98.27
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.26
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.26
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.25
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.24
PRK04841	903	transcriptional regulator MalT; Provisional	98.21
KOG1586|consensus	288		98.2
KOG4555|consensus	175		98.15
KOG1915|consensus	677		98.13
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.1
KOG1915|consensus	677		98.09
KOG2796|consensus	366		98.06
TIGR02400	456	trehalose_OtsA alpha,alpha-trehalose-phosphate syn	98.03
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.01
KOG4642|consensus	284		98.0
cd01635	229	Glycosyltransferase_GTB_type Glycosyltransferases	97.99
KOG1070|consensus	1710		97.98
KOG2376|consensus	652		97.95
PRK04841	903	transcriptional regulator MalT; Provisional	97.94
KOG0545|consensus	329		97.9
PF13428	44	TPR_14: Tetratricopeptide repeat	97.85
KOG3081|consensus	299		97.85
KOG1941|consensus	518		97.84
KOG4642|consensus	284		97.83
KOG1941|consensus	518		97.81
PF13428	44	TPR_14: Tetratricopeptide repeat	97.77
TIGR03713	519	acc_sec_asp1 accessory Sec system protein Asp1. Th	97.74
PF13431	34	TPR_17: Tetratricopeptide repeat	97.74
PRK10125	405	putative glycosyl transferase; Provisional	97.72
KOG0376|consensus	476		97.72
KOG2471|consensus	696		97.71
TIGR01426	392	MGT glycosyltransferase, MGT family. This model de	97.68
KOG1070|consensus	1710		97.67
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.66
PF13431	34	TPR_17: Tetratricopeptide repeat	97.66
PLN03004	451	UDP-glycosyltransferase	97.63
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.63
KOG0376|consensus	476		97.62
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.6
KOG0545|consensus	329		97.56
COG0438	381	RfaG Glycosyltransferase [Cell envelope biogenesis	97.56
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.54
KOG2053|consensus	932		97.53
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.5
PLN02670	472	transferase, transferring glycosyl groups	97.47
KOG0853|consensus	495		97.46
PLN03063	797	alpha,alpha-trehalose-phosphate synthase (UDP-form	97.46
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.44
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.36
PLN00414	446	glycosyltransferase family protein	97.34
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.34
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.34
PLN02173	449	UDP-glucosyl transferase family protein	97.33
PLN02410	451	UDP-glucoronosyl/UDP-glucosyl transferase family p	97.32
KOG1586|consensus	288		97.32
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.31
PLN02863	477	UDP-glucoronosyl/UDP-glucosyl transferase family p	97.3
PLN02562	448	UDP-glycosyltransferase	97.28
PLN02554	481	UDP-glycosyltransferase family protein	97.28
cd03784	401	GT1_Gtf_like This family includes the Gtfs, a grou	97.28
KOG2053|consensus	932		97.28
KOG2610|consensus	491		97.27
KOG1585|consensus	308		97.26
KOG0551|consensus	390		97.25
PLN02448	459	UDP-glycosyltransferase family protein	97.25
PLN02764	453	glycosyltransferase family protein	97.24
TIGR02919	438	accessory Sec system glycosyltransferase GtfB. Mem	97.23
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.22
PLN02167	475	UDP-glycosyltransferase family protein	97.22
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.22
PRK14501	726	putative bifunctional trehalose-6-phosphate syntha	97.21
PLN02207	468	UDP-glycosyltransferase	97.18
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.17
PLN00164	480	glucosyltransferase; Provisional	97.16
PHA03392	507	egt ecdysteroid UDP-glucosyltransferase; Provision	97.15
PF00201	500	UDPGT: UDP-glucoronosyl and UDP-glucosyl transfera	97.15
PLN02208	442	glycosyltransferase family protein	97.15
PLN02992	481	coniferyl-alcohol glucosyltransferase	97.13
KOG2047|consensus	835		97.11
cd03793	590	GT1_Glycogen_synthase_GSY2_like Glycogen synthase,	97.11
PLN02210	456	UDP-glucosyl transferase	97.11
PLN03015	470	UDP-glucosyl transferase	97.09
KOG3617|consensus	1416		97.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.06
KOG0530|consensus	318		97.04
KOG2047|consensus	835		97.04
PLN02534	491	UDP-glycosyltransferase	97.02
KOG1585|consensus	308		96.99
PLN02555	480	limonoid glucosyltransferase	96.99
TIGR03492	396	conserved hypothetical protein. This protein famil	96.95
KOG0530|consensus	318		96.93
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.92
KOG1308|consensus	377		96.91
PLN02152	455	indole-3-acetate beta-glucosyltransferase	96.91
COG1819	406	Glycosyl transferases, related to UDP-glucuronosyl	96.9
PRK09814	333	beta-1,6-galactofuranosyltransferase; Provisional	96.89
KOG1387|consensus	465		96.88
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.88
KOG0551|consensus	390		96.86
KOG2796|consensus	366		96.86
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.83
PLN03007	482	UDP-glucosyltransferase family protein	96.83
KOG1308|consensus	377		96.75
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.66
COG0707	357	MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami	96.66
KOG4507|consensus	886		96.62
TIGR02398	487	gluc_glyc_Psyn glucosylglycerol-phosphate synthase	96.59
PF13524	92	Glyco_trans_1_2: Glycosyl transferases group 1	96.55
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.55
KOG4507|consensus	886		96.52
TIGR03568	365	NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase,	96.52
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.51
KOG2610|consensus	491		96.46
KOG3617|consensus	1416		96.45
KOG3824|consensus	472		96.36
PF02350	346	Epimerase_2: UDP-N-acetylglucosamine 2-epimerase;	96.35
KOG2471|consensus	696		96.29
KOG3824|consensus	472		96.23
KOG1550|consensus	552		96.22
COG1519	419	KdtA 3-deoxy-D-manno-octulosonic-acid transferase	96.19
PF02684	373	LpxB: Lipid-A-disaccharide synthetase; InterPro: I	96.16
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.11
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.1
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.09
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.08
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.05
PRK12446	352	undecaprenyldiphospho-muramoylpentapeptide beta-N-	95.79
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.78
KOG2396|consensus	568		95.78
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.76
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.73
PRK10941	269	hypothetical protein; Provisional	95.72
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.67
KOG2396|consensus	568		95.66
TIGR03590	279	PseG pseudaminic acid biosynthesis-associated prot	95.62
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.62
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.62
KOG1550|consensus	552		95.61
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.58
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.58
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.52
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.47
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.46
TIGR00661	321	MJ1255 conserved hypothetical protein. This model	95.39
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.38
PF13528	318	Glyco_trans_1_3: Glycosyl transferase family 1	95.38
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.37
PRK10941	269	hypothetical protein; Provisional	95.27
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.24
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.2
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.18
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.16
PLN03064	934	alpha,alpha-trehalose-phosphate synthase (UDP-form	95.08
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.91
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.84
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.82
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.78
KOG1192|consensus	496		94.71
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.64
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.57
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.49
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.34
KOG0529|consensus	421		94.31
COG0763	381	LpxB Lipid A disaccharide synthetase [Cell envelop	94.29
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.27
KOG2300|consensus	629		94.17
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.1
KOG0985|consensus	1666		94.09
KOG1310|consensus	758		93.99
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.97
KOG2300|consensus	629		93.92
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.88
PRK01021	608	lpxB lipid-A-disaccharide synthase; Reviewed	93.81
KOG1914|consensus	656		93.71
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.7
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.62
KOG3364|consensus	149		93.46
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.43
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.41
KOG4814|consensus	872		93.39
KOG0890|consensus	2382		93.36
KOG1310|consensus	758		93.13
PF04101	167	Glyco_tran_28_C: Glycosyltransferase family 28 C-t	93.12
COG0297	487	GlgA Glycogen synthase [Carbohydrate transport and	93.06
KOG4814|consensus	872		92.77
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.7
KOG3364|consensus	149		92.67
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.29
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.09
KOG2941|consensus	444		91.52
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	91.39
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.32
KOG1839|consensus	1236		91.02
KOG2422|consensus	665		90.82
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.7
KOG1258|consensus	577		90.52
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.5
KOG3616|consensus	1636		90.41
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	90.33
KOG1914|consensus	656		90.33
KOG1538|consensus	1081		90.32
KOG1258|consensus	577		90.25
PF07429	360	Glyco_transf_56: 4-alpha-L-fucosyltransferase glyc	90.19
KOG4014|consensus	248		89.86
COG2912	269	Uncharacterized conserved protein [Function unknow	89.83
KOG0529|consensus	421		89.43
KOG0985|consensus	1666		89.35
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.28
PF05159	269	Capsule_synth: Capsule polysaccharide biosynthesis	89.26
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	88.76
KOG1464|consensus	440		88.72
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	88.67
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	88.62
KOG3807|consensus	556		88.49
PRK02797	322	4-alpha-L-fucosyltransferase; Provisional	88.45
COG2912	269	Uncharacterized conserved protein [Function unknow	87.97
KOG2041|consensus	1189		87.69
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.66
KOG3616|consensus	1636		87.55
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	86.91
COG4941	415	Predicted RNA polymerase sigma factor containing a	86.77
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	86.62
PRK10422	352	lipopolysaccharide core biosynthesis protein; Prov	86.3
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	86.25
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	85.89
PRK14089	347	ipid-A-disaccharide synthase; Provisional	85.82
TIGR02201	344	heptsyl_trn_III lipopolysaccharide heptosyltransfe	85.53
KOG1839|consensus	1236		84.97
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	84.7
COG3629	280	DnrI DNA-binding transcriptional activator of the	84.62
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	84.3
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	84.13
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	84.11
KOG2581|consensus	493		83.96
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	83.93
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	83.88
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	83.3
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	83.02
KOG0546|consensus	372		82.66
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	82.6
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	82.57
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	82.47
COG4394	370	Uncharacterized protein conserved in bacteria [Fun	82.17

>KOG4626|consensus

Probab=100.00  E-value=4.1e-99  Score=786.19  Aligned_cols=538  Identities=57%  Similarity=0.910  Sum_probs=478.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|..+|.+|++.+|..+-+|.+||.++..+|+               |.+..+|+++|.+|.+.+.+++|.. +|..
T Consensus       199 rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs-~Y~r  277 (966)
T KOG4626|consen  199 RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS-CYLR  277 (966)
T ss_pred             ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH-HHHH
Confidence            46789999999999999999999999999999985               8899999999999999999999985 7888


Q ss_pred             HhhcCCCchh---hhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHH-HcCCHHHHHHHH
Q psy17691         66 TRELAPGNRI---RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVL-LLIQVSEAEECY  139 (673)
Q Consensus        66 ~~~l~p~~~~---~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~  139 (673)
                      +..+.|++..   +++-+|...|..              ..++..+  +++++|+.+.++..++..+ ..|+..+|..+|
T Consensus       278 Al~lrpn~A~a~gNla~iYyeqG~l--------------dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cY  343 (966)
T KOG4626|consen  278 ALNLRPNHAVAHGNLACIYYEQGLL--------------DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCY  343 (966)
T ss_pred             HHhcCCcchhhccceEEEEeccccH--------------HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHH
Confidence            8888888864   455556555543              2344444  6678999999997776555 599999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        140 NTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD  219 (673)
Q Consensus       140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  219 (673)
                      .+++.+.|+++++.++||++|.++|.+++|...|+++++..|..+.+++|||.+|.++|++++|+.+|++++++.|..++
T Consensus       344 nkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd  423 (966)
T KOG4626|consen  344 NKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD  423 (966)
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHHHH----
Q psy17691        220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLLLL----  286 (673)
Q Consensus       220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~~----  286 (673)
                      ++.|+|+.|..+|+.++|+++|.+|+.++|..++++.|||.+|.+.|+..         |+++||++++++|+..+    
T Consensus       424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v  503 (966)
T KOG4626|consen  424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV  503 (966)
T ss_pred             HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987         89999999999998721    


Q ss_pred             ------------------------------------------------hhccccc-----cc------------------
Q psy17691        287 ------------------------------------------------DAHSNLA-----SI------------------  295 (673)
Q Consensus       287 ------------------------------------------------~~~~~~~-----~~------------------  295 (673)
                                                                      .+|.++|     .+                  
T Consensus       504 cdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rl  583 (966)
T KOG4626|consen  504 CDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRL  583 (966)
T ss_pred             hcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCce
Confidence                                                            1222222     00                  


Q ss_pred             -----------ccc---------------------------------------hhhhhhhhh-------------hhhhh
Q psy17691        296 -----------HKD---------------------------------------SVVMSLLQI-------------IHEFI  312 (673)
Q Consensus       296 -----------~~~---------------------------------------~~~~~l~~~-------------~DiLv  312 (673)
                                 |..                                       .||.|++|+             |||||
T Consensus       584 rIGYvSsDFgnHp~Shlmqsv~gmHdr~kveVfcYals~~d~t~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILv  663 (966)
T KOG4626|consen  584 RIGYVSSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALSVNDGTNFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILV  663 (966)
T ss_pred             EEEeecccccCCchHHHhccCcCcCCccceEEEEEEeecCCCchHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEE
Confidence                       111                                       234466654             48999


Q ss_pred             --cc---------ccccchhhhhhhhcCCCCCCCcccccccccCccCchhhhHHHHhhhccCCCccccccccccCchhhh
Q psy17691        313 --VG---------FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKE  381 (673)
Q Consensus       313 --~G---------fa~rpApvQ~~~lGyp~ttG~~~~Dy~l~d~~~~p~~~~~~ysE~l~~lp~~~~~~~~~~~~~~~~~  381 (673)
                        .|         ||+|||||||+|+|||||||+++|||+|+|.++.|++....|+|++++||+|||++||.+.-.+   
T Consensus       664 nlnGyTkgarneifAlrPAPIQv~wlGyPgTtGa~~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~---  740 (966)
T KOG4626|consen  664 NLNGYTKGARNEIFALRPAPIQVMWLGYPGTTGATFMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQD---  740 (966)
T ss_pred             eccccccccccceeeccCCceeEEeecCCCCCCCceeeEEeecccCChHHHHHHHHHHHhhCCceEEecCccccccc---
Confidence              55         9999999999999999999999999999999999999999999999999999999987642100   


Q ss_pred             hhhhccccccccccCCCcccccCCCCccchhhhhhhhccccccccccceeeecCceeccCccccccccccccCcccCccc
Q psy17691        382 RFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSI  461 (673)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (673)
                            .++                   |                                     ++            
T Consensus       741 ------~~d-------------------p-------------------------------------n~------------  746 (966)
T KOG4626|consen  741 ------VLD-------------------P-------------------------------------NN------------  746 (966)
T ss_pred             ------ccC-------------------C-------------------------------------CC------------
Confidence                  000                   0                                     00            


Q ss_pred             ccccccccCCCCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691        462 VITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA  541 (673)
Q Consensus       462 ~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (673)
                       .++|+++|||+|.|||||||+++||+|.++++|++||++||||+||++.                              
T Consensus       747 -kP~r~~y~Lp~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~Lwllr------------------------------  795 (966)
T KOG4626|consen  747 -KPTRSQYGLPEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLR------------------------------  795 (966)
T ss_pred             -CCCCCCCCCCCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEe------------------------------
Confidence             1368899999999999999999999999999999999999999999988                              


Q ss_pred             cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecC
Q psy17691        542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP  621 (673)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~  621 (673)
                                ||..++.+++..+++.|++++||+|++....+||+++++.+||+|||++++|+||++|.||||||+|||+
T Consensus       796 ----------fPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmp  865 (966)
T KOG4626|consen  796 ----------FPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGVPMVTMP  865 (966)
T ss_pred             ----------ccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcCCcccchhhhccCCceeecc
Confidence                      5666678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        622 GETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       622 g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      |+++++|+++|+|..+|++++||.+.|||+++||+||+|.+.++++|..+
T Consensus       866 ge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd~~~L~~lr~~l  915 (966)
T KOG4626|consen  866 GETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATDKEYLKKLRAKL  915 (966)
T ss_pred             cHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999865

>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A

Probab=100.00  E-value=1.1e-76  Score=631.64  Aligned_cols=322  Identities=56%  Similarity=0.872  Sum_probs=244.6

Q ss_pred             hhhhh--cc---------ccccchhhhhhhhcCCCCCCCcccccccccCccCchhhhHHHHhhhccCCCccccccccccC
Q psy17691        308 IHEFI--VG---------FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMF  376 (673)
Q Consensus       308 ~DiLv--~G---------fa~rpApvQ~~~lGyp~ttG~~~~Dy~l~d~~~~p~~~~~~ysE~l~~lp~~~~~~~~~~~~  376 (673)
                      |||||  +|         |++||||||++|||||+|||+++|||+|+|++++|++.+.+|+|||+|||++|+|+||.+.|
T Consensus        78 IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~~  157 (468)
T PF13844_consen   78 IDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQMF  157 (468)
T ss_dssp             -SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH-
T ss_pred             CCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHhh
Confidence            59999  66         99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhccccccccccCCCcccccCCCCccchhhh--------------------------------hhhhcccccc
Q psy17691        377 PHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKE--------------------------------RFIVSGKTMI  424 (673)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------------------------------~~~~~~~~~~  424 (673)
                      ++++.+..+..+-...   ..++.......+..|.+..                                +-..|+..|+
T Consensus       158 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (468)
T PF13844_consen  158 PHLKERIVLEEKDDSR---VVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMI  234 (468)
T ss_dssp             GGGSS-EEEE-----------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHH
T ss_pred             hhhhhceEeccccCCc---ccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHH
Confidence            9998887655442221   1222222233333333221                                0003577899


Q ss_pred             ccccceeeecCceeccCccccccccccccCcccCcccccccccccCCCCCcEEEecCCcccccChhhHHHHHHHHhcccC
Q psy17691        425 ASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPN  504 (673)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~  504 (673)
                      .+||++.+++|.+++||+++.++++++..++++|++.+.++|++||||+|.|||||||++.|++|+++++|++||+++|+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~  314 (468)
T PF13844_consen  235 ASGQVQTSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPN  314 (468)
T ss_dssp             HHT-SEEEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTT
T ss_pred             HcCCeeEeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHH
Q psy17691        505 SILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEE  584 (673)
Q Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~  584 (673)
                      |+|||+.                                        ++..++++++++++++||+++||+|.+..+.++
T Consensus       315 S~L~L~~----------------------------------------~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~e  354 (468)
T PF13844_consen  315 SRLWLLR----------------------------------------FPASGEARLRRRFAAHGVDPDRIIFSPVAPREE  354 (468)
T ss_dssp             EEEEEEE----------------------------------------TSTTHHHHHHHHHHHTTS-GGGEEEEE---HHH
T ss_pred             cEEEEee----------------------------------------CCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHH
Confidence            9999987                                        344567899999999999999999999999999


Q ss_pred             HHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHH
Q psy17691        585 HVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYC  664 (673)
Q Consensus       585 ~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~  664 (673)
                      |+..|+.+||+|||||||||||+||||||||||||++|++++||+|+|+|+++|++||||.|.++||++|++|++|+++|
T Consensus       355 hl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l  434 (468)
T PF13844_consen  355 HLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERL  434 (468)
T ss_dssp             HHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhc
Q psy17691        665 EKALLYHE  672 (673)
Q Consensus       665 ~~~~~~~~  672 (673)
                      +++|+++.
T Consensus       435 ~~lR~~Lr  442 (468)
T PF13844_consen  435 RALRAKLR  442 (468)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-68  Score=561.75  Aligned_cols=422  Identities=29%  Similarity=0.396  Sum_probs=301.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCHHHHHHH------HHHHHHcCCHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLK-ALEVFPEFAAAHSNL------ASVLQQQGKLT  201 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~  201 (673)
                      .+....+......++..+|++..+..+|+......|....+...+.. +.+..|++......+      +..+...|+..
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (620)
T COG3914          80 LADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTA  159 (620)
T ss_pred             cccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHH
Confidence            45565666666666666666666666666666555555544444433 666666665554444      55566666666


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhC-------------CC-CHHHHHHHHHHHHHc
Q psy17691        202 DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ--GALQCYSRAIQIN-------------PG-FADAHSNLASIHKDS  265 (673)
Q Consensus       202 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--eA~~~~~~Al~l~-------------p~-~~~a~~~La~~~~~~  265 (673)
                      ++....+++.++.|.++.....+.....++-++.  ++...+.+.....             |. +......++.+..+.
T Consensus       160 ~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~~~~~tnl~~~~~~~~~~~~~~~~~~~d~p~~~l~~~~q~~~i~~~~  239 (620)
T COG3914         160 EAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQLALFLGIYGFSLAYLADDPLKNLAIANQLLKILSQN  239 (620)
T ss_pred             HHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccchhccchHHHHHHHHHhhccccchhhhccchhhhHHHHHHHHHHhccc
Confidence            6666666666666666555444444433333221  1111111111110             10 011111111111100


Q ss_pred             --C--CCc------------cc---c---CCCCHHHHHHHHHHhhccccc------ccc-------------cchhhh--
Q psy17691        266 --G--KRG------------FF---I---RTDLNSAYFWLLLLDAHSNLA------SIH-------------KDSVVM--  302 (673)
Q Consensus       266 --g--~~~------------l~---l---~p~~~~a~~~l~~~~~~~~~~------~~~-------------~~~~~~--  302 (673)
                        .  ++.            ++   +   --+++..|....+.+.|++-.      .+.             ...+|.  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~  319 (620)
T COG3914         240 APELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPI  319 (620)
T ss_pred             CCCccccccchhhccccccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheecc
Confidence              0  000            00   0   013445566666666665421      000             002222  


Q ss_pred             ---hhhh--------hhhhhh--cc---------ccccchhhhhhhhcCCCCCCCcccccccccCccCchhhhHHHHhhh
Q psy17691        303 ---SLLQ--------IIHEFI--VG---------FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKL  360 (673)
Q Consensus       303 ---~l~~--------~~DiLv--~G---------fa~rpApvQ~~~lGyp~ttG~~~~Dy~l~d~~~~p~~~~~~ysE~l  360 (673)
                         |..+        -|||||  +|         |++|||||||||+|||+|||++.|||+|+|++++||+++.+|+|||
T Consensus       320 ~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl  399 (620)
T COG3914         320 GRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKL  399 (620)
T ss_pred             CCcCHHHHHHHHHhcCCeEEEeccCceeccchhhhhcCCCceEEeecccccccCCCcceEEeeCceecCchHHHHHHHHH
Confidence               1111        249999  77         9999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccccccccccCchhhhhhhhccccccccccCCCcccccCCCCccchhhhhhhhccccccccccceeeecCceecc
Q psy17691        361 AFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQN  440 (673)
Q Consensus       361 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (673)
                      +|||.||..+|...                                   |.                             
T Consensus       400 ~RLp~cy~p~d~~~-----------------------------------~v-----------------------------  415 (620)
T COG3914         400 WRLPQCYQPVDGFE-----------------------------------PV-----------------------------  415 (620)
T ss_pred             HhcccccCCCCCcc-----------------------------------cC-----------------------------
Confidence            99998887654210                                   00                             


Q ss_pred             CccccccccccccCcccCcccccccccccCCCCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCC
Q psy17691        441 GLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANI  520 (673)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~  520 (673)
                                      .    +..+|.+.|||++.+||||||+.+|++|+++++|++||++||||+|||++++   +   
T Consensus       416 ----------------~----p~~sR~~lglp~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~---~---  469 (620)
T COG3914         416 ----------------T----PPPSRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG---D---  469 (620)
T ss_pred             ----------------C----CCcchhhcCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC---C---
Confidence                            0    0147889999999999999999999999999999999999999999998721   0   


Q ss_pred             CCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC
Q psy17691        521 SRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL  600 (673)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p  600 (673)
                                                      +....+++++.++++||+.+|++|.|+.+.++|++.|..+||+|||||
T Consensus       470 --------------------------------~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyP  517 (620)
T COG3914         470 --------------------------------DAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYP  517 (620)
T ss_pred             --------------------------------cHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeeccc
Confidence                                            334578899999999999999999999999999999999999999999


Q ss_pred             CCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhhc
Q psy17691        601 CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYHE  672 (673)
Q Consensus       601 ~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~~  672 (673)
                      |+|+||++|||||||||||+.|++|++|+|+||++++|++||||+|.++||++||++++|...|++.|...+
T Consensus       518 Y~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r~~l~  589 (620)
T COG3914         518 YGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAELK  589 (620)
T ss_pred             CCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999886543

>KOG4626|consensus

Probab=99.97  E-value=8.7e-30  Score=267.56  Aligned_cols=254  Identities=37%  Similarity=0.518  Sum_probs=136.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..|+.+++++|++.++|.++|.++..+|+               |+..-+...+|..+..+|+.++|.. +|.+
T Consensus       131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~-cYlk  209 (966)
T KOG4626|consen  131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA-CYLK  209 (966)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH-HHHH
Confidence            46789999999999999999999999999999986               5555566677777777888777764 5566


Q ss_pred             HhhcCCCchh---hhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHH-HcCCHHHHHHHH
Q psy17691         66 TRELAPGNRI---RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVL-LLIQVSEAEECY  139 (673)
Q Consensus        66 ~~~l~p~~~~---~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~  139 (673)
                      ++...|...+   ++|-++...|..              ..++..+  +..++|+...+|..++..+ ..+.+++|+.+|
T Consensus       210 Ai~~qp~fAiawsnLg~~f~~~Gei--------------~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y  275 (966)
T KOG4626|consen  210 AIETQPCFAIAWSNLGCVFNAQGEI--------------WLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY  275 (966)
T ss_pred             HHhhCCceeeeehhcchHHhhcchH--------------HHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence            6666664432   222222222221              1122222  3344555555554433332 244444444444


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        140 NTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD  219 (673)
Q Consensus       140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  219 (673)
                      ++|+.+.|+++.++-++|.+|+++|..+-|+.+|++++++.|+.+++++|||..+...|+..+|..+|.+++.+.|++++
T Consensus       276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had  355 (966)
T KOG4626|consen  276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD  355 (966)
T ss_pred             HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH
Confidence            44444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +.+|||++|.++|++++|...|+++++..|+...++.|||.+|.++|+++
T Consensus       356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~  405 (966)
T KOG4626|consen  356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLD  405 (966)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHH
Confidence            44444444444444444444444444444444444444444444444443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.91  E-value=1.5e-21  Score=221.95  Aligned_cols=144  Identities=12%  Similarity=0.043  Sum_probs=130.2

Q ss_pred             CCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy17691        114 PDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS  192 (673)
Q Consensus       114 p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  192 (673)
                      |++..++..+ ......|++++|+..++.+++++|++..++.+++.++.+++++++|...++++++.+|+++.+++.+|.
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~  162 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK  162 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            3445555444 344558899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       193 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      ++.+.|++++|+++|++++..+|+++.++.++|.+++..|+.++|...|++|++...+-...+.+
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~  227 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR  227 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987665555444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.89  E-value=4.2e-21  Score=220.94  Aligned_cols=267  Identities=21%  Similarity=0.208  Sum_probs=183.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      +|++|+..|+++|+++|+ +..|.++|.||..+|+               |++..+++.+|.++..+|++++|.... ..
T Consensus       142 ~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~-~~  219 (615)
T TIGR00990       142 DFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL-TA  219 (615)
T ss_pred             CHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HH
Confidence            589999999999999996 7899999999999997               788999999999999999999986432 22


Q ss_pred             HhhcCCCch---------------------------------hhhhhhhhhcCCCc------cc-cccc-----------
Q psy17691         66 TRELAPGNR---------------------------------IRIGYVSSDFGNHP------TS-HLMQ-----------   94 (673)
Q Consensus        66 ~~~l~p~~~---------------------------------~~l~~~~~~l~~~~------~a-~~~~-----------   94 (673)
                      +..+.+...                                 ..++..+.......      .. ....           
T Consensus       220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  299 (615)
T TIGR00990       220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL  299 (615)
T ss_pred             HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence            222221110                                 00111110000000      00 0000           


Q ss_pred             ----ccCCCCchhHHHHHHHhc-----CCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691         95 ----SVPGMHNKSRVEIFCYAL-----SPDDGTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG  164 (673)
Q Consensus        95 ----~~~~~~~~~a~~~~~~~l-----~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g  164 (673)
                          ......+..++..+...+     .|+...++..++. +..+|++++|+..|+++++++|++..++..+|.++..+|
T Consensus       300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g  379 (615)
T TIGR00990       300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG  379 (615)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC
Confidence                000012233333332222     2444455544433 345778888888888888888877777788888888888


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA  244 (673)
Q Consensus       165 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~A  244 (673)
                      ++++|+..|+++++.+|+++.+++++|.++...|++++|+.+|+++++++|++..++.++|.++.++|++++|+..|+++
T Consensus       380 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a  459 (615)
T TIGR00990       380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC  459 (615)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            88888888888888888877788888888888888888888888888888877777778888888888888888888888


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        245 IQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       245 l~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ++..|+++.++.++|.++...|+++
T Consensus       460 l~~~P~~~~~~~~lg~~~~~~g~~~  484 (615)
T TIGR00990       460 KKNFPEAPDVYNYYGELLLDQNKFD  484 (615)
T ss_pred             HHhCCCChHHHHHHHHHHHHccCHH
Confidence            8778877777777888887777776

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.86  E-value=2.2e-19  Score=206.82  Aligned_cols=253  Identities=14%  Similarity=0.087  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHH
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKYT   66 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~   66 (673)
                      +++|+..++.++...|++++++..+|.+....|+               |+++.++..+|.++...|++++|.. .++.+
T Consensus        58 ~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~-~l~~A  136 (656)
T PRK15174         58 TDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVAD-LAEQA  136 (656)
T ss_pred             cchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            3455555566666666666666666655555554               4555555555555555565555553 44444


Q ss_pred             hhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691         67 RELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVLLLIQVSEAEECYNT  141 (673)
Q Consensus        67 ~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~  141 (673)
                      ..+.|++.   ..++.++...++...+              +..+  .....|++...+..+..++..|++++|+..+++
T Consensus       137 l~l~P~~~~a~~~la~~l~~~g~~~eA--------------~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~  202 (656)
T PRK15174        137 WLAFSGNSQIFALHLRTLVLMDKELQA--------------ISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARA  202 (656)
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCChHHH--------------HHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44555442   2333444444432221              1111  112334444433333333344444444444444


Q ss_pred             HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCC
Q psy17691        142 ALRLCP-THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTD----ALLHYKEAIRIQPS  216 (673)
Q Consensus       142 al~~~p-~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e----A~~~~~~al~~~p~  216 (673)
                      +++.+| ........++.++...|++++|+..|+++++.+|++..+++++|.++...|++++    |+..|+++++++|+
T Consensus       203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~  282 (656)
T PRK15174        203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD  282 (656)
T ss_pred             HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence            444433 1222223334444444444444444444444444444444444444444444443    44444444444444


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       217 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +..++.++|.++..+|++++|+.+++++++++|+++.++.+++.++...|+++
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~  335 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT  335 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            44444444444444444444444444444444444444444444444444444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.86  E-value=3.5e-19  Score=205.18  Aligned_cols=266  Identities=12%  Similarity=0.044  Sum_probs=220.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..|+++++.+|+++.++..+|.++...|+               |+...++..++.++...|++++|.. .++.
T Consensus        91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~-~~~~  169 (656)
T PRK15174         91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAIS-LART  169 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHH-HHHH
Confidence            57899999999999999999999999999999997               7788889999999999999999876 3445


Q ss_pred             HhhcCCCchhhh--hhhhhhcCCCcccccccccCCCCchhHHHHHHH--hcCC-CChhHH-HHHHHHHHcCCHHHHHHHH
Q psy17691         66 TRELAPGNRIRI--GYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY--ALSP-DDGTTF-SYIISVLLLIQVSEAEECY  139 (673)
Q Consensus        66 ~~~l~p~~~~~l--~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~--~l~p-~~~~~~-~~~~~~~~~g~~~~A~~~~  139 (673)
                      .....|+.....  ...+...++              ..++...+..  ...| ...... ..+..+...|++++|+..|
T Consensus       170 ~~~~~P~~~~a~~~~~~l~~~g~--------------~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~  235 (656)
T PRK15174        170 QAQEVPPRGDMIATCLSFLNKSR--------------LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG  235 (656)
T ss_pred             HHHhCCCCHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence            555666553211  111222222              2334443322  2222 222222 2345566799999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        140 NTALRLCPTHADSLNNLANIKREQGYIEE----ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP  215 (673)
Q Consensus       140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~e----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p  215 (673)
                      +++++.+|+++.++.++|.++..+|++++    |+..|+++++++|++..++.++|.++..+|++++|+..++++++++|
T Consensus       236 ~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P  315 (656)
T PRK15174        236 ESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP  315 (656)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999996    89999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHH
Q psy17691        216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYF  281 (673)
Q Consensus       216 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~  281 (673)
                      +++.++.++|.++.+.|++++|+..|+++++.+|++...+..++.++...|+++         ++.+|++....+
T Consensus       316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~  390 (656)
T PRK15174        316 DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSF  390 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhH
Confidence            999999999999999999999999999999999999888888899999999987         567777654333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.85  E-value=6e-19  Score=203.09  Aligned_cols=271  Identities=18%  Similarity=0.202  Sum_probs=211.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH---------------------------------
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLAN---------------------------------   47 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~---------------------------------   47 (673)
                      ++++|+..++++++++|++..+|+.+|.+|..+|+++.+...+....                                 
T Consensus       175 ~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~  254 (615)
T TIGR00990       175 DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK  254 (615)
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999998655543221110                                 


Q ss_pred             ------------HHH------------------------------------HcCChhhhcCChhhHHhhc---CCCc---
Q psy17691         48 ------------ALK------------------------------------EKGQINVLHKPPYKYTREL---APGN---   73 (673)
Q Consensus        48 ------------~l~------------------------------------~~g~~~~A~~~~~~~~~~l---~p~~---   73 (673)
                                  .+.                                    ..+++++|.. .++.+...   .|..   
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~-~~~~al~~~~~~~~~a~a  333 (615)
T TIGR00990       255 PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR-AFEKALDLGKLGEKEAIA  333 (615)
T ss_pred             CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH-HHHHHHhcCCCChhhHHH
Confidence                        000                                    0012333332 23333332   2332   


Q ss_pred             hhhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691         74 RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHA  150 (673)
Q Consensus        74 ~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~  150 (673)
                      ...++.++...++.              .+++..+  .+.++|+....+... ..+...|++++|+.+|+++++.+|+++
T Consensus       334 ~~~lg~~~~~~g~~--------------~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  399 (615)
T TIGR00990       334 LNLRGTFKCLKGKH--------------LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP  399 (615)
T ss_pred             HHHHHHHHHHcCCH--------------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            24556677666653              3344444  456788888887555 455679999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE  230 (673)
Q Consensus       151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  230 (673)
                      .+++.+|.++...|++++|+.+|+++++++|++..++.++|.++..+|++++|+..|+++++..|+++.++..+|.++..
T Consensus       400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~  479 (615)
T TIGR00990       400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD  479 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHH------HHHHHH-HHcCCCc---------cccCCCCHHHHHHHHHH
Q psy17691        231 MQDIQGALQCYSRAIQINPGFADAHS------NLASIH-KDSGKRG---------FFIRTDLNSAYFWLLLL  286 (673)
Q Consensus       231 ~g~~~eA~~~~~~Al~l~p~~~~a~~------~La~~~-~~~g~~~---------l~l~p~~~~a~~~l~~~  286 (673)
                      +|++++|++.|+++++++|++...+.      +.+.++ ...|+++         +.++|++..++..++..
T Consensus       480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~  551 (615)
T TIGR00990       480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQL  551 (615)
T ss_pred             ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            99999999999999999987544332      333333 3357766         67899998888777743

>KOG1126|consensus

Probab=99.84  E-value=2.6e-20  Score=200.05  Aligned_cols=256  Identities=18%  Similarity=0.166  Sum_probs=211.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhh
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVS   81 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~   81 (673)
                      ..+|+..|++.-+..++-...+..+|..|+++++++.++..|.+..-..... .+.     +           -....++
T Consensus       335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r-v~~-----m-----------eiyST~L  397 (638)
T KOG1126|consen  335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR-VKG-----M-----------EIYSTTL  397 (638)
T ss_pred             HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccc-----h-----------hHHHHHH
Confidence            4688899998667778888888889999999988888877777665432110 000     0           0001111


Q ss_pred             hhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691         82 SDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIK  160 (673)
Q Consensus        82 ~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~  160 (673)
                      ..+            .....-..+..-.+..+|+.++.|..++.++. +++++.|+++|++|++++|.+..+|..+|.=+
T Consensus       398 WHL------------q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~  465 (638)
T KOG1126|consen  398 WHL------------QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHES  465 (638)
T ss_pred             HHH------------HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChh
Confidence            111            11111122333355678999999988877776 88999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691        161 REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC  240 (673)
Q Consensus       161 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~  240 (673)
                      ....+++.|..+|++|+..+|.+..+|+.+|.+|.++++++.|.-+|++|++++|.+......+|.++.++|+.++|+..
T Consensus       466 ~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~  545 (638)
T KOG1126|consen  466 IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQL  545 (638)
T ss_pred             hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHHHH
Q psy17691        241 YSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLLLL  286 (673)
Q Consensus       241 ~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~~  286 (673)
                      |++|+.++|.++-..++.+.++..+++++         -++-|+...+++.+|..
T Consensus       546 ~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki  600 (638)
T KOG1126|consen  546 YEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKI  600 (638)
T ss_pred             HHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            99999999999999999999999999997         35789999999888854

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.83  E-value=3.3e-18  Score=209.64  Aligned_cols=273  Identities=17%  Similarity=0.153  Sum_probs=213.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHH-----------------------------HHHHHHHHH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAY-----------------------------CNLANALKE   51 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~-----------------------------~~la~~l~~   51 (673)
                      ++++|+..|+++++.+|++++++..||.++..+|+++.+..+                             ..++..+..
T Consensus       284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~  363 (1157)
T PRK11447        284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK  363 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999973322222                             233556667


Q ss_pred             cCChhhhcCChhhHHhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHH--------
Q psy17691         52 KGQINVLHKPPYKYTRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF--------  120 (673)
Q Consensus        52 ~g~~~~A~~~~~~~~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~--------  120 (673)
                      .|++++|.. .++.+..+.|++.   ..++.++...++...+......            .+..+|++..++        
T Consensus       364 ~g~~~eA~~-~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~------------aL~~~p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        364 ANNLAQAER-LYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ------------ALRMDPGNTNAVRGLANLYR  430 (1157)
T ss_pred             CCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH------------HHHhCCCCHHHHHHHHHHHH
Confidence            788888775 5677777777664   3566777776665444211100            111222222211        


Q ss_pred             -----------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        121 -----------------------------------SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGY  165 (673)
Q Consensus       121 -----------------------------------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~  165 (673)
                                                         ..+..+...|++++|+.+|+++++++|+++.+++.+|.+|.++|+
T Consensus       431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~  510 (1157)
T PRK11447        431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ  510 (1157)
T ss_pred             hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence                                               123344568999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------------------
Q psy17691        166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEA-----------------------------------  210 (673)
Q Consensus       166 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a-----------------------------------  210 (673)
                      +++|+..++++++.+|+++..++.++..+...+++++|+..++++                                   
T Consensus       511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~  590 (1157)
T PRK11447        511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA  590 (1157)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence            999999999999999999999888888877788887777766542                                   


Q ss_pred             -----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCC
Q psy17691        211 -----IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDL  276 (673)
Q Consensus       211 -----l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~  276 (673)
                           ++.+|.++..+..+|.++.++|++++|+++|+++++.+|++.+++.+++.++...|+++         +...|++
T Consensus       591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~  670 (1157)
T PRK11447        591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS  670 (1157)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence                 33478888899999999999999999999999999999999999999999999999988         5678888


Q ss_pred             HHHHHHHHHH
Q psy17691        277 NSAYFWLLLL  286 (673)
Q Consensus       277 ~~a~~~l~~~  286 (673)
                      +.++..++.+
T Consensus       671 ~~~~~~la~~  680 (1157)
T PRK11447        671 LNTQRRVALA  680 (1157)
T ss_pred             hHHHHHHHHH
Confidence            8887777643

>KOG1126|consensus

Probab=99.81  E-value=4.1e-19  Score=190.98  Aligned_cols=225  Identities=19%  Similarity=0.236  Sum_probs=197.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      .|++|.++|+.+-+++|--.+..-....+++++.+               ++.++.|..+|.++.-+++++.|++ +++.
T Consensus       368 ~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik-~f~R  446 (638)
T KOG1126|consen  368 EYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIK-CFKR  446 (638)
T ss_pred             HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHH-HHHH
Confidence            47899999999999999876655555555555543               7888899999999998888888775 4444


Q ss_pred             HhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q psy17691         66 TRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIIS-VLLLIQVSEAEECYNTALR  144 (673)
Q Consensus        66 ~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~  144 (673)
                      +.+                                           ++|+...+|.+.+. +....++|+|..+|++|+.
T Consensus       447 AiQ-------------------------------------------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~  483 (638)
T KOG1126|consen  447 AIQ-------------------------------------------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG  483 (638)
T ss_pred             hhc-------------------------------------------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence            444                                           44555555544433 3446799999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691        145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM  224 (673)
Q Consensus       145 ~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  224 (673)
                      .+|.+..+|+.+|.+|.++++++.|+-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..
T Consensus       484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       225 g~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      |.++..++++++|+..+++.-++.|++..+++.+|.+|.+.|+.+
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~  608 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD  608 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence            999999999999999999999999999999999999999999987

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.80  E-value=2.5e-17  Score=196.82  Aligned_cols=269  Identities=20%  Similarity=0.241  Sum_probs=212.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..++++++.+|++..+|..+|.++...|+               |+....+..++.++...|++++|.. .++.
T Consensus       582 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~  660 (899)
T TIGR02917       582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT-SLKR  660 (899)
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHH
Confidence            47899999999999999999999999999999987               5677788889999999999999886 5666


Q ss_pred             HhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHH-HHHHHcCCHHHHHHHH
Q psy17691         66 TRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYI-ISVLLLIQVSEAEECY  139 (673)
Q Consensus        66 ~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~  139 (673)
                      +....|++.   ..++.++...++...+              ...+  .....|+....+... ..+...|++++|+..|
T Consensus       661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  726 (899)
T TIGR02917       661 ALELKPDNTEAQIGLAQLLLAAKRTESA--------------KKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY  726 (899)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHH--------------HHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence            677777653   4455556555543322              2222  223455566555443 4455688888888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        140 NTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD  219 (673)
Q Consensus       140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  219 (673)
                      +++++..|++ ..+..++.++...|++++|++.++++++.+|++..+++.+|.++...|++++|++.|+++++.+|+++.
T Consensus       727 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  805 (899)
T TIGR02917       727 RKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV  805 (899)
T ss_pred             HHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH
Confidence            8888888877 677788888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHHHH
Q psy17691        220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLLLL  286 (673)
Q Consensus       220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~~  286 (673)
                      ++.++|.++...|+ .+|+.++++++++.|+++..+.++|.++...|+++         ++.+|.++.++++++..
T Consensus       806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  880 (899)
T TIGR02917       806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA  880 (899)
T ss_pred             HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence            88888888888888 77888888888888888888888888888888887         67778888888777643

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.79  E-value=4.6e-17  Score=194.60  Aligned_cols=271  Identities=19%  Similarity=0.188  Sum_probs=236.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..++++++.+|.+...+..++.++...|+               +.....+..++.++...|++++|.. .++.
T Consensus       548 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~  626 (899)
T TIGR02917       548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS-SFKK  626 (899)
T ss_pred             CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHH
Confidence            47899999999999999999999999999999996               5677889999999999999999986 5666


Q ss_pred             HhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHH-HHHHHcCCHHHHHHHH
Q psy17691         66 TRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYI-ISVLLLIQVSEAEECY  139 (673)
Q Consensus        66 ~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~  139 (673)
                      .....|.+.   ..++.++...++...              +...+  .....|++...+... ..+...|++++|+..+
T Consensus       627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~--------------A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  692 (899)
T TIGR02917       627 LLALQPDSALALLLLADAYAVMKNYAK--------------AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA  692 (899)
T ss_pred             HHHhCCCChHHHHHHHHHHHHcCCHHH--------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            666666653   456777777776433              33333  345678888777555 4556699999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        140 NTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD  219 (673)
Q Consensus       140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  219 (673)
                      +++.+..|++...+..+|.++...|++++|+..|+++++..|++ ..+.+++.++...|++++|++.++++++.+|++..
T Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~  771 (899)
T TIGR02917       693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV  771 (899)
T ss_pred             HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999999999999999999988 78889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc--------cccCCCCHHHHHHHHHHh
Q psy17691        220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG--------FFIRTDLNSAYFWLLLLD  287 (673)
Q Consensus       220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~--------l~l~p~~~~a~~~l~~~~  287 (673)
                      +++.+|.++..+|++++|+.+|+++++..|+++.++.+++.++...|+.+        +.+.|+++..+..++...
T Consensus       772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  847 (899)
T TIGR02917       772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLL  847 (899)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999933        678899998888777554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.79  E-value=3.6e-17  Score=193.05  Aligned_cols=245  Identities=13%  Similarity=0.047  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhh--hhh
Q psy17691          4 LAIDTYRRAIELQPN--FPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIR--IGY   79 (673)
Q Consensus         4 eAi~~~~kAL~l~P~--~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~--l~~   79 (673)
                      .+...+.+++..+|.  ++.+|+++|.++.. +++..+...+..+..                    ..|+....  ++.
T Consensus       459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~--------------------~~Pd~~~~L~lA~  517 (987)
T PRK09782        459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ--------------------RQPDAWQHRAVAY  517 (987)
T ss_pred             hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH--------------------hCCchHHHHHHHH
Confidence            355666777777788  89999999999886 554444332222211                    11222111  122


Q ss_pred             hhhhcCCCcccccccccCCCCchhHHHHHH--HhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691         80 VSSDFGNHPTSHLMQSVPGMHNKSRVEIFC--YALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLA  157 (673)
Q Consensus        80 ~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~--~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg  157 (673)
                      .+...++.              ..++..+.  ....|.+...+..+..+...|++++|+.+|+++++.+|++...+..++
T Consensus       518 al~~~Gr~--------------eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La  583 (987)
T PRK09782        518 QAYQVEDY--------------ATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLH  583 (987)
T ss_pred             HHHHCCCH--------------HHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            22233322              22222221  122334444444455666788888888888888888888877777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691        158 NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA  237 (673)
Q Consensus       158 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA  237 (673)
                      ..+...|++++|+..|+++++++|+ ..++.++|.++.+.|++++|+..|+++++++|+++.++.++|.++.++|++++|
T Consensus       584 ~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        584 AQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            7777778888888888888888886 888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHH
Q psy17691        238 LQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLL  284 (673)
Q Consensus       238 ~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~  284 (673)
                      ++.|+++++++|+++.++.++|.++...|+++         ++++|++.......+
T Consensus       663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g  718 (987)
T PRK09782        663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP  718 (987)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence            88888888888888888888888888888877         677888776665544

>PRK12370 invasion protein regulator; Provisional

Probab=99.78  E-value=4.8e-17  Score=184.41  Aligned_cols=212  Identities=15%  Similarity=0.026  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhh
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVS   81 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~   81 (673)
                      +++|+.+|++|++++|+++.+|..+|.+|...++....          ...+++++|..                     
T Consensus       277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~----------~~~~~~~~A~~---------------------  325 (553)
T PRK12370        277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIF----------DKQNAMIKAKE---------------------  325 (553)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc----------ccchHHHHHHH---------------------
Confidence            57899999999999999999999999998876531100          01111122111                     


Q ss_pred             hhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691         82 SDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIK  160 (673)
Q Consensus        82 ~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~  160 (673)
                                             ....++.++|++..++..++. +...|++++|+.+|+++++++|+++.+++.+|.++
T Consensus       326 -----------------------~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  382 (553)
T PRK12370        326 -----------------------HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNL  382 (553)
T ss_pred             -----------------------HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                                   111245577888888865554 45689999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691        161 REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ-PSFADAYSNMGNTLKEMQDIQGALQ  239 (673)
Q Consensus       161 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~  239 (673)
                      ...|++++|+..++++++++|.+...+..++.+++..|++++|+..++++++.. |+++.++.++|.++..+|++++|++
T Consensus       383 ~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~  462 (553)
T PRK12370        383 FMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARK  462 (553)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHH
Confidence            999999999999999999999998887777878888999999999999999875 7788899999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        240 CYSRAIQINPGFADAHSNLASIHKDSGK  267 (673)
Q Consensus       240 ~~~~Al~l~p~~~~a~~~La~~~~~~g~  267 (673)
                      .+++.....|+...++..++..|...|+
T Consensus       463 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~  490 (553)
T PRK12370        463 LTKEISTQEITGLIAVNLLYAEYCQNSE  490 (553)
T ss_pred             HHHHhhhccchhHHHHHHHHHHHhccHH
Confidence            9999888888888888888888887775

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.77  E-value=1.1e-16  Score=174.07  Aligned_cols=252  Identities=15%  Similarity=0.120  Sum_probs=180.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      ++++|+..|+++++.+|++..++..+|.++...|+++.+...+..+..   ........          .......++.+
T Consensus        50 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~----------~~~~~~~La~~  116 (389)
T PRK11788         50 QPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS---RPDLTREQ----------RLLALQELGQD  116 (389)
T ss_pred             ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc---CCCCCHHH----------HHHHHHHHHHH
Confidence            478999999999999999999999999999999975554444332211   00000000          00001222333


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHHH--HhcCCCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFC--YALSPDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHA-----DS  152 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~--~~l~p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a  152 (673)
                      +...++.              ..+...+.  ....|.+..++.. +..+...|++++|++.++++++..|.+.     ..
T Consensus       117 ~~~~g~~--------------~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  182 (389)
T PRK11788        117 YLKAGLL--------------DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF  182 (389)
T ss_pred             HHHCCCH--------------HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            3333322              12222221  2234555555533 4455568899999999999988877653     25


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF-ADAYSNMGNTLKEM  231 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~  231 (673)
                      +..+|.++..+|++++|+..|+++++.+|++..++..+|.++...|++++|++.++++++.+|.+ ..++..++.+|...
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  262 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL  262 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence            66788888899999999999999999999888889999999999999999999999999888876 45678888999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHH
Q psy17691        232 QDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAY  280 (673)
Q Consensus       232 g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~  280 (673)
                      |++++|+..++++++..|+.... ..++.++.+.|+++         ++..|++....
T Consensus       263 g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~  319 (389)
T PRK11788        263 GDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH  319 (389)
T ss_pred             CCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            99999999999999988876544 78888888888887         55667766544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.77  E-value=9.1e-17  Score=197.04  Aligned_cols=186  Identities=18%  Similarity=0.192  Sum_probs=152.4

Q ss_pred             chhHHHHH--HHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHc
Q psy17691        101 NKSRVEIF--CYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHAD--------------SLNNLANIKREQ  163 (673)
Q Consensus       101 ~~~a~~~~--~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------a~~~Lg~~~~~~  163 (673)
                      ..+++..+  .+..+|++..++..+ ..+...|++++|+.+|+++++.+|++..              ....+|.++...
T Consensus       285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~  364 (1157)
T PRK11447        285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA  364 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence            34455554  456788888877555 4555689999999999999999887643              123557888899


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------
Q psy17691        164 GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT----------------  227 (673)
Q Consensus       164 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~----------------  227 (673)
                      |++++|+..|+++++++|++..++..+|.++..+|++++|++.|+++++.+|++..++..++.+                
T Consensus       365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l  444 (1157)
T PRK11447        365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL  444 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999987766555544                


Q ss_pred             --------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------ccc
Q psy17691        228 --------------------------LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFI  272 (673)
Q Consensus       228 --------------------------~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l  272 (673)
                                                +...|++++|+++|+++++++|+++.+++.++.++...|+++         ++.
T Consensus       445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~  524 (1157)
T PRK11447        445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ  524 (1157)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence                                      446789999999999999999999999999999999999987         567


Q ss_pred             CCCCHHHHHHHHHH
Q psy17691        273 RTDLNSAYFWLLLL  286 (673)
Q Consensus       273 ~p~~~~a~~~l~~~  286 (673)
                      +|+++++++.+++.
T Consensus       525 ~P~~~~~~~a~al~  538 (1157)
T PRK11447        525 KPNDPEQVYAYGLY  538 (1157)
T ss_pred             CCCCHHHHHHHHHH
Confidence            89999888777643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.76  E-value=1.2e-16  Score=188.71  Aligned_cols=223  Identities=14%  Similarity=0.062  Sum_probs=178.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHH--------------HHHHHHHcCChhhhcCChhhHH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCN--------------LANALKEKGQINVLHKPPYKYT   66 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~--------------la~~l~~~g~~~~A~~~~~~~~   66 (673)
                      +.++|+..|.+++...|++. .+..+|.++...|+.+.+...+.              +|.++...|+.++|.. .++  
T Consensus       491 ~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~-~l~--  566 (987)
T PRK09782        491 LPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDR-WLQ--  566 (987)
T ss_pred             CcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHH-HHH--
Confidence            35689999999999999864 36666777777776444443333              2333333333333221 111  


Q ss_pred             hhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHh
Q psy17691         67 RELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRL  145 (673)
Q Consensus        67 ~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~  145 (673)
                                                               ..+..+|+....+..+ ......|++++|+..|++++++
T Consensus       567 -----------------------------------------qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l  605 (987)
T PRK09782        567 -----------------------------------------QAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI  605 (987)
T ss_pred             -----------------------------------------HHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence                                                     1233445554444332 2334569999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       146 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  225 (673)
                      +|+ ..++.++|.++.+.|++++|+..|+++++++|+++.+++++|.++...|++++|++.|+++++++|+++.++.++|
T Consensus       606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA  684 (987)
T PRK09782        606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA  684 (987)
T ss_pred             CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            997 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       226 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      .++..+|++++|+.+|+++++++|++..+....|.+.....+++
T Consensus       685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~  728 (987)
T PRK09782        685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFR  728 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999988888877665544

>KOG0547|consensus

Probab=99.76  E-value=3e-17  Score=170.12  Aligned_cols=275  Identities=19%  Similarity=0.174  Sum_probs=207.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      +|++||++|++||++.|+.+-.|.|++-||...|+               |++..+++.++.++...|+++++.....-.
T Consensus       130 kY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~  209 (606)
T KOG0547|consen  130 KYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVL  209 (606)
T ss_pred             cHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHH
Confidence            58999999999999999999999999999999996               899999999999999999999885421111


Q ss_pred             HhhcC--CCc-------------------------------hhhhhhhhhhcCCCcccc--------------ccc---c
Q psy17691         66 TRELA--PGN-------------------------------RIRIGYVSSDFGNHPTSH--------------LMQ---S   95 (673)
Q Consensus        66 ~~~l~--p~~-------------------------------~~~l~~~~~~l~~~~~a~--------------~~~---~   95 (673)
                      .+.-.  ...                               ...+...+..+.......              .+.   .
T Consensus       210 ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~  289 (606)
T KOG0547|consen  210 CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEK  289 (606)
T ss_pred             HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHh
Confidence            11000  000                               000000000000000000              000   0


Q ss_pred             cCCCCchhHHHHHHH-------hcCCC--C------hhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691         96 VPGMHNKSRVEIFCY-------ALSPD--D------GTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLANI  159 (673)
Q Consensus        96 ~~~~~~~~a~~~~~~-------~l~p~--~------~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~  159 (673)
                      .....+..+.+.+..       ....+  +      ..++.+.+. ++..|++..|...++++++++|.+...|..+|.+
T Consensus       290 ~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~  369 (606)
T KOG0547|consen  290 GLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAA  369 (606)
T ss_pred             hCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHH
Confidence            000011111111100       01111  1      222322233 3347899999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691        160 KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ  239 (673)
Q Consensus       160 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~  239 (673)
                      |.++++-++-...|++|..++|+++++|+..|.+++-++++++|+.-|+++++++|++..++..++.+.+++++++++..
T Consensus       370 y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~  449 (606)
T KOG0547|consen  370 YADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK  449 (606)
T ss_pred             HhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCC
Q psy17691        240 CYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTD  275 (673)
Q Consensus       240 ~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~  275 (673)
                      .|+.+.+..|+.++.+...|.++.++++++         +.+.|.
T Consensus       450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999987         566666

>KOG1155|consensus

Probab=99.75  E-value=1.1e-16  Score=165.00  Aligned_cols=268  Identities=17%  Similarity=0.187  Sum_probs=196.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------C--CcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCC
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ--------P--NFPDAYCNLANALKEKGQINVLHKPPYKYTRELAP   71 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~--------~--~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p   71 (673)
                      .++|++.|.+++...|-+..||..|+.+......        +  ..-..-+-++.++.+....+++...........-|
T Consensus       180 ~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~  259 (559)
T KOG1155|consen  180 LSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFP  259 (559)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            4679999999999999999999999887654432        2  12222333445555544444443322211111122


Q ss_pred             Cch---hhhhhhhhhcCCCccccccc-------------------ccCCCCchhH---HHHHHHhcCCCChhHHHHHHHH
Q psy17691         72 GNR---IRIGYVSSDFGNHPTSHLMQ-------------------SVPGMHNKSR---VEIFCYALSPDDGTTFSYIISV  126 (673)
Q Consensus        72 ~~~---~~l~~~~~~l~~~~~a~~~~-------------------~~~~~~~~~a---~~~~~~~l~p~~~~~~~~~~~~  126 (673)
                      +..   ...+.+.-...+.+.+...-                   .+--...+..   ++.....++.-.++....++++
T Consensus       260 ~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNY  339 (559)
T KOG1155|consen  260 NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANY  339 (559)
T ss_pred             ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhH
Confidence            221   12222222222222211000                   0000001111   1222333444455555666666


Q ss_pred             HH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691        127 LL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALL  205 (673)
Q Consensus       127 ~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  205 (673)
                      +. .++.++|+.+|++|++++|+...+|..+|.=|.++++...|++.|++|++++|.+..+|+.||+.|...+...=|+-
T Consensus       340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLy  419 (559)
T KOG1155|consen  340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALY  419 (559)
T ss_pred             HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHH
Confidence            66 67999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        206 HYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       206 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +|++|+++.|+++..|..||.||.++++.++|+++|++|+.....+..++..||.+|.++++..
T Consensus       420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~  483 (559)
T KOG1155|consen  420 YFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN  483 (559)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence            9999999999999999999999999999999999999999999999999999999999998876

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.74  E-value=9.8e-16  Score=180.13  Aligned_cols=283  Identities=13%  Similarity=0.050  Sum_probs=199.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..|+++++++|+++.++..+|.++...|+               |+.+. ++.+|.++...|+.++|.. .++.
T Consensus        64 ~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~-~l~~  141 (765)
T PRK10049         64 QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR-AMTQ  141 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH-HHHH
Confidence            47899999999999999999999999999999996               77888 9999999999999999886 6777


Q ss_pred             HhhcCCCch---hhhhhhhhhcCCCcccc-cccccCC------------------------C----Cc---hhHHHHHHH
Q psy17691         66 TRELAPGNR---IRIGYVSSDFGNHPTSH-LMQSVPG------------------------M----HN---KSRVEIFCY  110 (673)
Q Consensus        66 ~~~l~p~~~---~~l~~~~~~l~~~~~a~-~~~~~~~------------------------~----~~---~~a~~~~~~  110 (673)
                      +..+.|++.   ..++.++...+....+. .+.....                        .    ..   ..+++.+..
T Consensus       142 al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~  221 (765)
T PRK10049        142 ALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA  221 (765)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence            888888774   23444444333322111 0000000                        0    00   122322211


Q ss_pred             h-----cCCCChhHHH-----HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17691        111 A-----LSPDDGTTFS-----YIISVLLLIQVSEAEECYNTALRLCPTH-ADSLNNLANIKREQGYIEEATRLYLKALEV  179 (673)
Q Consensus       111 ~-----l~p~~~~~~~-----~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~  179 (673)
                      .     .+|+....+.     .++.++..|++++|+..|+++++..+.. ..+...+|.+|..+|++++|+..|+++++.
T Consensus       222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~  301 (765)
T PRK10049        222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH  301 (765)
T ss_pred             HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence            1     2233222211     1345567788888888888888875432 223444688888888888888888888887


Q ss_pred             CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691        180 FPEF----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS---------------FADAYSNMGNTLKEMQDIQGALQC  240 (673)
Q Consensus       180 ~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~eA~~~  240 (673)
                      +|.+    ......++.++.++|++++|++.++++.+..|.               ...++..+|.++...|++++|++.
T Consensus       302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~  381 (765)
T PRK10049        302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR  381 (765)
T ss_pred             CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7765    356677777788888888888888888887662               134667788888888888888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHHH
Q psy17691        241 YSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLLL  285 (673)
Q Consensus       241 ~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~  285 (673)
                      +++++...|++..++..+|.++...|+++         +.++|++...++.++.
T Consensus       382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~  435 (765)
T PRK10049        382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW  435 (765)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence            88888888888888888888888888876         6778888777766654

>KOG1125|consensus

Probab=99.71  E-value=2.9e-16  Score=166.69  Aligned_cols=232  Identities=19%  Similarity=0.227  Sum_probs=182.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHH
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKYT   66 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~   66 (673)
                      +.+|.-+|+.|++.+|+++++|..||.+....++               |++-+++..+|..|...|.-.+|.+...+.+
T Consensus       301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi  380 (579)
T KOG1125|consen  301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI  380 (579)
T ss_pred             chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            4689999999999999999999999999999885               7888888888888888887777765443333


Q ss_pred             hhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691         67 RELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC  146 (673)
Q Consensus        67 ~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  146 (673)
                      ..-.+.........-...+                              ..      ........+..-.+.|-.+....
T Consensus       381 ~~~p~y~~l~~a~~~~~~~------------------------------~~------~s~~~~~~l~~i~~~fLeaa~~~  424 (579)
T KOG1125|consen  381 RNKPKYVHLVSAGENEDFE------------------------------NT------KSFLDSSHLAHIQELFLEAARQL  424 (579)
T ss_pred             HhCccchhccccCcccccc------------------------------CC------cCCCCHHHHHHHHHHHHHHHHhC
Confidence            3221111000000000000                              00      00000113445556777777888


Q ss_pred             C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691        147 P--THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM  224 (673)
Q Consensus       147 p--~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  224 (673)
                      |  .+++++..||.+|...|+|++|+.||+.||+.+|++...|+.||.++....+.++|+..|++|+++.|....+++||
T Consensus       425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl  504 (579)
T KOG1125|consen  425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL  504 (579)
T ss_pred             CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh
Confidence            8  78999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCCc
Q psy17691        225 GNTLKEMQDIQGALQCYSRAIQINPG----------FADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       225 g~~~~~~g~~~eA~~~~~~Al~l~p~----------~~~a~~~La~~~~~~g~~~  269 (673)
                      |..|+.+|.|+||.++|-.||.+.+.          +..+|..|-.++...++.+
T Consensus       505 gIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  505 GISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            99999999999999999999998654          1357888888888888876

>KOG1173|consensus

Probab=99.70  E-value=2e-15  Score=159.67  Aligned_cols=239  Identities=17%  Similarity=0.182  Sum_probs=172.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      +|.+..+..+..++.+|-+..++...--++..+|+               |+.+..|+..|.-|...|++.+|.+ ++.+
T Consensus       259 ~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARr-y~SK  337 (611)
T KOG1173|consen  259 RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARR-YFSK  337 (611)
T ss_pred             hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHH-HHHH
Confidence            47788899999999999998877554448888886               7778888888888887777777654 3333


Q ss_pred             HhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHH
Q psy17691         66 TRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALR  144 (673)
Q Consensus        66 ~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~  144 (673)
                                                                 +..++|..+.+|... ..+...++.++|+.+|..|-+
T Consensus       338 -------------------------------------------at~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar  374 (611)
T KOG1173|consen  338 -------------------------------------------ATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR  374 (611)
T ss_pred             -------------------------------------------HhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence                                                       334556666666443 334446777778888888777


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CC
Q psy17691        145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP-------SF  217 (673)
Q Consensus       145 ~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-------~~  217 (673)
                      +-|........+|.-|.+.++++-|.+.|.+|+.+.|.++-+++.+|.+.+..+.|.+|..+|+++++.-+       ..
T Consensus       375 l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w  454 (611)
T KOG1173|consen  375 LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFW  454 (611)
T ss_pred             hccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccch
Confidence            77777777777777777777888888888888888888877777788877777778888887777773311       12


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHH
Q psy17691        218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWL  283 (673)
Q Consensus       218 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l  283 (673)
                      ...+.|||.++.+++++++|+.+|+++|.+.|.+..++..+|.+|..+|+++         |.++|++..+--.|
T Consensus       455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL  529 (611)
T KOG1173|consen  455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL  529 (611)
T ss_pred             hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence            3357778888888888888888888888888888888888888887777776         55666654443333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.70  E-value=6.1e-15  Score=173.43  Aligned_cols=278  Identities=14%  Similarity=0.079  Sum_probs=209.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..++++++.+|+++. +..+|.++...|+               |+...++..++.++...+..++|+... +.
T Consensus        98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l-~~  175 (765)
T PRK10049         98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI-DD  175 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH-Hh
Confidence            478999999999999999999 9999999999996               788888888999888888877665322 21


Q ss_pred             HhhcCCCc----------h-hh-------------------hh---hhhhhcCCCcccc--c--------ccccCCCCch
Q psy17691         66 TRELAPGN----------R-IR-------------------IG---YVSSDFGNHPTSH--L--------MQSVPGMHNK  102 (673)
Q Consensus        66 ~~~l~p~~----------~-~~-------------------l~---~~~~~l~~~~~a~--~--------~~~~~~~~~~  102 (673)
                      ... .|+.          . ..                   +.   .+.......+...  .        ..-.......
T Consensus       176 ~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~  254 (765)
T PRK10049        176 ANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK  254 (765)
T ss_pred             CCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence            111 1110          0 00                   00   0000000000000  0        0001112334


Q ss_pred             hHHHHHHHhc--C---CCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691        103 SRVEIFCYAL--S---PDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTH----ADSLNNLANIKREQGYIEEATRLY  173 (673)
Q Consensus       103 ~a~~~~~~~l--~---p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~Lg~~~~~~g~~~eA~~~~  173 (673)
                      +++..+...+  .   |+....+ .+..++.+|++++|+.+|+++++.+|.+    ......++.++.++|++++|+..+
T Consensus       255 eA~~~~~~ll~~~~~~P~~a~~~-la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l  333 (765)
T PRK10049        255 DVISEYQRLKAEGQIIPPWAQRW-VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT  333 (765)
T ss_pred             HHHHHHHHhhccCCCCCHHHHHH-HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence            4555553333  2   2222222 3566778999999999999999988876    457788888999999999999999


Q ss_pred             HHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        174 LKALEVFPE---------------FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL  238 (673)
Q Consensus       174 ~~al~~~p~---------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~  238 (673)
                      +++.+..|.               ...++..++.++...|++++|++.++++++..|.+..++..+|.++...|++++|+
T Consensus       334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~  413 (765)
T PRK10049        334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAE  413 (765)
T ss_pred             HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            999998773               24577899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHH
Q psy17691        239 QCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFW  282 (673)
Q Consensus       239 ~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~  282 (673)
                      +.++++++++|++..+++.++.++...|+++         ++..|+++.+...
T Consensus       414 ~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~  466 (765)
T PRK10049        414 NELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL  466 (765)
T ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999999999999999999999998         7789999986543

>KOG1155|consensus

Probab=99.69  E-value=1.5e-15  Score=156.74  Aligned_cols=237  Identities=19%  Similarity=0.193  Sum_probs=183.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhh
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVS   81 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~   81 (673)
                      +++|+..|+...+.+|-..+-.-...++++-+.+  .. .+-.+|.....-.              +..|+....++.-|
T Consensus       278 fD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~--~s-kLs~LA~~v~~id--------------KyR~ETCCiIaNYY  340 (559)
T KOG1155|consen  278 FDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND--KS-KLSYLAQNVSNID--------------KYRPETCCIIANYY  340 (559)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh--hH-HHHHHHHHHHHhc--------------cCCccceeeehhHH
Confidence            6677777777777777666655555666555542  11 1111222221111              12233333333333


Q ss_pred             hhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691         82 SDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLAN  158 (673)
Q Consensus        82 ~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~  158 (673)
                      +..+.              .+.++..+  ++.++|....+|.+.|. +..+++...|++.|++|++++|.+..+|+.||+
T Consensus       341 Slr~e--------------HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQ  406 (559)
T KOG1155|consen  341 SLRSE--------------HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQ  406 (559)
T ss_pred             HHHHh--------------HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhH
Confidence            33222              23445544  55678999999977655 667999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        159 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL  238 (673)
Q Consensus       159 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~  238 (673)
                      .|.-++-..=|+-+|++|++..|+++..|..||.+|.++++.++|+++|++++.....+..++..||.+|.++++.++|.
T Consensus       407 aYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa  486 (559)
T KOG1155|consen  407 AYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA  486 (559)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        239 QCYSRAIQ-------INPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       239 ~~~~~Al~-------l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      .+|++.++       .+|.-..+..-|+.-+.+.++++
T Consensus       487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~  524 (559)
T KOG1155|consen  487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD  524 (559)
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH
Confidence            99999998       45556677777999999988887

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.69  E-value=1.1e-15  Score=145.65  Aligned_cols=149  Identities=21%  Similarity=0.250  Sum_probs=141.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      .++..++..|++..|...+++||+.+|++..+|..++.+|...|+.+.|.+.|++|++++|++.++++|.|..++.+|++
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~  119 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP  119 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence            34456778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        201 TDALLHYKEAIRI--QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       201 ~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ++|...|++|+..  .+..+..+.|+|.|..++|+.+.|.++|+++++++|+++.....++..+.+.|++.
T Consensus       120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~  190 (250)
T COG3063         120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA  190 (250)
T ss_pred             HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence            9999999999985  45567899999999999999999999999999999999999999999999999986

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.69  E-value=6.7e-15  Score=146.32  Aligned_cols=156  Identities=22%  Similarity=0.228  Sum_probs=139.8

Q ss_pred             CCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHH
Q psy17691        114 PDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF--PEFAAAHSNL  190 (673)
Q Consensus       114 p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l  190 (673)
                      |++...+.. +..+...|++++|+..++++++..|++..++.++|.++...|++++|+..++++++..  +.....+.++
T Consensus        62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  141 (234)
T TIGR02521        62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENA  141 (234)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHH
Confidence            444555543 4455668999999999999999999999999999999999999999999999999864  5567889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      |.++...|++++|...++++++.+|++...+..+|.++...|++++|..+++++++..|.+...+..++.++...|+.+
T Consensus       142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (234)
T TIGR02521       142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVA  220 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999999999999999999999999999999999999999988999888899988888765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0547|consensus

Probab=99.69  E-value=2.9e-15  Score=155.54  Aligned_cols=177  Identities=21%  Similarity=0.218  Sum_probs=150.4

Q ss_pred             HHhcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy17691        109 CYALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH  187 (673)
Q Consensus       109 ~~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  187 (673)
                      .+.++|.+...| ..+..+...++.++-...|.+|.+++|+++++|+..|++++-++++++|+..|++++.++|++..++
T Consensus       352 ~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~  431 (606)
T KOG0547|consen  352 AIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY  431 (606)
T ss_pred             HHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence            566777777755 5556666788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHH
Q psy17691        188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG------FADAHSNLASI  261 (673)
Q Consensus       188 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~------~~~a~~~La~~  261 (673)
                      ..++.+++++++++++...|+.+++..|+.++++...|.++..++++++|++.|.+|+++.|.      ++..+.+-|.+
T Consensus       432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l  511 (606)
T KOG0547|consen  432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL  511 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence            999999999999999999999999999999999999999999999999999999999999998      55555555555


Q ss_pred             HHHc-CCCc---------cccCCCCHHHHHHHHH
Q psy17691        262 HKDS-GKRG---------FFIRTDLNSAYFWLLL  285 (673)
Q Consensus       262 ~~~~-g~~~---------l~l~p~~~~a~~~l~~  285 (673)
                      ..++ +++.         ++++|....++..+|-
T Consensus       512 ~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq  545 (606)
T KOG0547|consen  512 VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQ  545 (606)
T ss_pred             hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence            4443 2222         7889988888877773

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.67  E-value=1.5e-15  Score=140.97  Aligned_cols=127  Identities=18%  Similarity=0.115  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        136 EECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP  215 (673)
Q Consensus       136 ~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p  215 (673)
                      ..+|+++++++|++   +..+|.++...|++++|+.+|++++..+|.+..+|+++|.++...|++++|+..|+++++++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46799999999885   667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       216 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      +++.+++++|.++..+|++++|+..|++++++.|+++..+.+++.+....
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998876554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.65  E-value=1e-15  Score=158.81  Aligned_cols=237  Identities=21%  Similarity=0.218  Sum_probs=123.9

Q ss_pred             CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhh
Q psy17691          1 LIDLAIDTYRRAIEL--QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIG   78 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l--~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~   78 (673)
                      ++++|++.+++.+..  .|++...|..+|.+...+++.+.+...+.........                 .+.....+.
T Consensus        23 ~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-----------------~~~~~~~l~   85 (280)
T PF13429_consen   23 DYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-----------------NPQDYERLI   85 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------------ccccccccc
Confidence            367888888665544  4888888888888888888766555444322211100                 011111111


Q ss_pred             hhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Q psy17691         79 YVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC--PTHADSLN  154 (673)
Q Consensus        79 ~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~  154 (673)
                      .+ ...++.              .++....  .....++.......+..+...++++++...++++....  +.++..+.
T Consensus        86 ~l-~~~~~~--------------~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  150 (280)
T PF13429_consen   86 QL-LQDGDP--------------EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWL  150 (280)
T ss_dssp             -----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHH
T ss_pred             cc-cccccc--------------cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence            11 111111              1111111  11112222222244455677899999999999988765  67889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        155 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI  234 (673)
Q Consensus       155 ~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  234 (673)
                      .+|.++.+.|+.++|+.+|+++++.+|++..++..++.++...|+++++.+.++...+..|+++..+..+|.++..+|++
T Consensus       151 ~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~  230 (280)
T PF13429_consen  151 ALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY  230 (280)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence            99999999999999999999999999999999999999999999999999999998888888899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        235 QGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       235 ~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ++|+.+|+++++.+|+++..+.++|.++...|+.+
T Consensus       231 ~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~  265 (280)
T PF13429_consen  231 EEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD  265 (280)
T ss_dssp             HHHHHHHHHHHHHSTT-HHHHHHHHHHHT------
T ss_pred             ccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999987

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.65  E-value=2.9e-14  Score=148.92  Aligned_cols=155  Identities=15%  Similarity=0.061  Sum_probs=97.2

Q ss_pred             hcCCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy17691        111 ALSPDDGTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN  189 (673)
Q Consensus       111 ~l~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  189 (673)
                      .++|++..+|...+. +...|++++|+..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++.... 
T Consensus        92 ~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-  170 (296)
T PRK11189         92 ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-  170 (296)
T ss_pred             HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-
Confidence            356777777755544 445788888888888888888888888888888888888888888888888888887763211 


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH--HHHH----HHHHHhCCCCHHHHHHHHHHHH
Q psy17691        190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA--LQCY----SRAIQINPGFADAHSNLASIHK  263 (673)
Q Consensus       190 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA--~~~~----~~Al~l~p~~~~a~~~La~~~~  263 (673)
                      ...+....+++++|+..+++++...+..  .|. .+.++..+|+..++  .+.+    +++.++.|...++|++||.++.
T Consensus       171 ~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~  247 (296)
T PRK11189        171 WLYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYL  247 (296)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            1123345667788888776665443221  121 24444445554332  2111    2223455566667777777777


Q ss_pred             HcCCCc
Q psy17691        264 DSGKRG  269 (673)
Q Consensus       264 ~~g~~~  269 (673)
                      ..|+++
T Consensus       248 ~~g~~~  253 (296)
T PRK11189        248 SLGDLD  253 (296)
T ss_pred             HCCCHH
Confidence            777765

>PRK12370 invasion protein regulator; Provisional

Probab=99.65  E-value=1.1e-14  Score=165.25  Aligned_cols=167  Identities=17%  Similarity=0.099  Sum_probs=149.6

Q ss_pred             hHHHHH--HHhcCCCChhHHHHHHHHH----------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        103 SRVEIF--CYALSPDDGTTFSYIISVL----------LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEAT  170 (673)
Q Consensus       103 ~a~~~~--~~~l~p~~~~~~~~~~~~~----------~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~  170 (673)
                      .+++.+  ++.++|++..++..++.++          ..+++++|+..++++++++|+++.++..+|.++..+|++++|+
T Consensus       279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~  358 (553)
T PRK12370        279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS  358 (553)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Confidence            344444  5678899988886554322          1245899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Q psy17691        171 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN-P  249 (673)
Q Consensus       171 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~-p  249 (673)
                      ..|+++++++|+++.+++++|.++...|++++|+..++++++++|.++..+..++.++...|++++|+.+++++++.. |
T Consensus       359 ~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p  438 (553)
T PRK12370        359 LLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQ  438 (553)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999998888788888888999999999999999885 8


Q ss_pred             CCHHHHHHHHHHHHHcCCCc
Q psy17691        250 GFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       250 ~~~~a~~~La~~~~~~g~~~  269 (673)
                      +++.++.++|.++..+|+++
T Consensus       439 ~~~~~~~~la~~l~~~G~~~  458 (553)
T PRK12370        439 DNPILLSMQVMFLSLKGKHE  458 (553)
T ss_pred             cCHHHHHHHHHHHHhCCCHH
Confidence            88999999999999999987

>KOG1173|consensus

Probab=99.65  E-value=8.7e-15  Score=154.81  Aligned_cols=210  Identities=18%  Similarity=0.283  Sum_probs=166.1

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchh
Q psy17691         11 RAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRI   75 (673)
Q Consensus        11 kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~   75 (673)
                      +.++..|+.+-.|+..|..|...|+               +.++.+|..+|..+...++.++|...++..++        
T Consensus       303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--------  374 (611)
T KOG1173|consen  303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--------  374 (611)
T ss_pred             HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--------
Confidence            4455667777777777777777665               44555555556666555555555432222211        


Q ss_pred             hhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCC-ChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691         76 RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPD-DGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLN  154 (673)
Q Consensus        76 ~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  154 (673)
                                                          +-+. ....++.+..+..+++++-|...|.+|+.+.|+++-+..
T Consensus       375 ------------------------------------l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~  418 (611)
T KOG1173|consen  375 ------------------------------------LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLH  418 (611)
T ss_pred             ------------------------------------hccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhh
Confidence                                                1222 223445556677799999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        155 NLANIKREQGYIEEATRLYLKALEVFP-------EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT  227 (673)
Q Consensus       155 ~Lg~~~~~~g~~~eA~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  227 (673)
                      .+|.+.+..+.|.+|..+|+++++.-+       .....+.|||.++.+++++++|+.+|+++|.+.|.++.++..+|.+
T Consensus       419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i  498 (611)
T KOG1173|consen  419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI  498 (611)
T ss_pred             hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence            999999999999999999999995422       2356799999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       228 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      |..+|+++.|+++|.++|.++|++.-+-..|+.+...
T Consensus       499 y~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  499 YHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            9999999999999999999999998887777766544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.65  E-value=7.4e-14  Score=151.77  Aligned_cols=139  Identities=17%  Similarity=0.155  Sum_probs=125.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHH
Q psy17691        123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-AAAHSNLASVLQQQGKLT  201 (673)
Q Consensus       123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~  201 (673)
                      +..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|++.++++++.+|.+ ..++..++.+|...|+++
T Consensus       187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~  266 (389)
T PRK11788        187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA  266 (389)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence            3455679999999999999999999999999999999999999999999999999999887 467889999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        202 DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       202 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~  262 (673)
                      +|+..++++++.+|+... +..+|.++.+.|++++|+..++++++..|++......++..+
T Consensus       267 ~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~  326 (389)
T PRK11788        267 EGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL  326 (389)
T ss_pred             HHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence            999999999999998754 489999999999999999999999999999876654444433

>KOG0624|consensus

Probab=99.64  E-value=2.2e-14  Score=143.04  Aligned_cols=281  Identities=14%  Similarity=0.150  Sum_probs=205.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++.+|+..|-.|++.||++..+++..|.+|..+|+               |++..+....|.++..+|++++|.. .+.+
T Consensus        53 Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~-DF~~  131 (504)
T KOG0624|consen   53 QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEA-DFDQ  131 (504)
T ss_pred             hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHH-HHHH
Confidence            47899999999999999999999999999999996               8889999999999999999999875 5666


Q ss_pred             HhhcCCCchhhh------hhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHH-HHHHHHHHcCCHHHHH
Q psy17691         66 TRELAPGNRIRI------GYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTF-SYIISVLLLIQVSEAE  136 (673)
Q Consensus        66 ~~~l~p~~~~~l------~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~-~~~~~~~~~g~~~~A~  136 (673)
                      .+.-+|++....      ..+...  .....++...........+++..  .+.+.|-++..+ ..+.++...|+...|+
T Consensus       132 vl~~~~s~~~~~eaqskl~~~~e~--~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI  209 (504)
T KOG0624|consen  132 VLQHEPSNGLVLEAQSKLALIQEH--WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAI  209 (504)
T ss_pred             HHhcCCCcchhHHHHHHHHhHHHH--HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHH
Confidence            666666442111      110000  00011122222222334444444  345666666665 5566777899999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH---H---------HHHHHHcCCHHHHH
Q psy17691        137 ECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN---L---------ASVLQQQGKLTDAL  204 (673)
Q Consensus       137 ~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~---l---------a~~~~~~g~~~eA~  204 (673)
                      .-++.+-++..++.+.++.++.+++..|+.+.++...++.|+++|++-.++-.   +         +.-....++|.+++
T Consensus       210 ~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cl  289 (504)
T KOG0624|consen  210 HDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECL  289 (504)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            99999999999999999999999999999999999999999999998543321   1         22234567777778


Q ss_pred             HHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cc
Q psy17691        205 LHYKEAIRIQPSFAD----AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FF  271 (673)
Q Consensus       205 ~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~  271 (673)
                      +.+++.++.+|..+.    ....+..|+..-|++.+|++.+.++|+++|++.+++...+.+|.....|+         .+
T Consensus       290 e~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  290 EAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             HHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            888888887777443    33446677778888888888888888888888888888888877766665         56


Q ss_pred             cCCCCHHHHHHHH
Q psy17691        272 IRTDLNSAYFWLL  284 (673)
Q Consensus       272 l~p~~~~a~~~l~  284 (673)
                      +++++..+.-.+-
T Consensus       370 ~n~sn~~~reGle  382 (504)
T KOG0624|consen  370 LNESNTRAREGLE  382 (504)
T ss_pred             cCcccHHHHHHHH
Confidence            7777766554443

>PLN02789 farnesyltranstransferase

Probab=99.63  E-value=3.6e-14  Score=148.34  Aligned_cols=132  Identities=15%  Similarity=0.105  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCH----HHHHH
Q psy17691        133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ---GKL----TDALL  205 (673)
Q Consensus       133 ~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~eA~~  205 (673)
                      ++++.+++++++.+|++..+|..++.++...|++++|++++.++++.+|.+..+|+..+.++...   |.+    +++++
T Consensus       125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~  204 (320)
T PLN02789        125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK  204 (320)
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555443   111    34455


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        206 HYKEAIRIQPSFADAYSNMGNTLKE----MQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       206 ~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      +..++|+++|++..+|+.++.++..    +++..+|+..+.++++.+|.+..+..-|+.+|..
T Consensus       205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            5555555555555555555555554    2334445555555555555555555555555543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.63  E-value=2.9e-14  Score=136.00  Aligned_cols=159  Identities=25%  Similarity=0.224  Sum_probs=135.5

Q ss_pred             hcCCCChhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHH
Q psy17691        111 ALSPDDGTTFSYIISVL-LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV--FPEFAAAH  187 (673)
Q Consensus       111 ~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~  187 (673)
                      +.+|+...+|.....++ ..|+.+.|.+.|++|++++|++.++++|.|.-++.+|++++|...|++|+..  .+..+..+
T Consensus        63 ~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~  142 (250)
T COG3063          63 EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTL  142 (250)
T ss_pred             HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhh
Confidence            35677777775555444 4788999999999999999999999999999999999999999999999875  45567899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK  267 (673)
Q Consensus       188 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~  267 (673)
                      -|+|.|..+.|+.+.|.++|+++++++|+++.....++..+++.|++-.|..++++....-+-..+.+.-...+-...|+
T Consensus       143 eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd  222 (250)
T COG3063         143 ENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGD  222 (250)
T ss_pred             hhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999887777667766666677777777


Q ss_pred             Cc
Q psy17691        268 RG  269 (673)
Q Consensus       268 ~~  269 (673)
                      -+
T Consensus       223 ~~  224 (250)
T COG3063         223 RA  224 (250)
T ss_pred             HH
Confidence            54

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.61  E-value=9e-14  Score=138.17  Aligned_cols=164  Identities=23%  Similarity=0.238  Sum_probs=149.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      ..+..+...|++++|+..++++++.+|++..++..+|.++..+|++++|++.++++++..|.+..++.++|.++...|++
T Consensus        36 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~  115 (234)
T TIGR02521        36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY  115 (234)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH
Confidence            44556677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------
Q psy17691        201 TDALLHYKEAIRIQ--PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------  269 (673)
Q Consensus       201 ~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------  269 (673)
                      ++|++.++++++..  +.....+.++|.++...|++++|..+|+++++.+|++..++..++.++...|+++         
T Consensus       116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  195 (234)
T TIGR02521       116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY  195 (234)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999864  4567789999999999999999999999999999999999999999999999987         


Q ss_pred             cccCCCCHHHHHHHH
Q psy17691        270 FFIRTDLNSAYFWLL  284 (673)
Q Consensus       270 l~l~p~~~~a~~~l~  284 (673)
                      +...|+++..+..++
T Consensus       196 ~~~~~~~~~~~~~~~  210 (234)
T TIGR02521       196 QQTYNQTAESLWLGI  210 (234)
T ss_pred             HHhCCCCHHHHHHHH
Confidence            445677666655443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2002|consensus

Probab=99.57  E-value=9.4e-13  Score=147.07  Aligned_cols=232  Identities=18%  Similarity=0.218  Sum_probs=155.7

Q ss_pred             CcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCc----hhhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HH
Q psy17691         37 NFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGN----RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CY  110 (673)
Q Consensus        37 ~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~----~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~  110 (673)
                      -.++.+|.+|.++..+|++++|.. +|..+...++++    ...+|..+...+...              .+..++  ..
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~-yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle--------------~s~~~fEkv~  369 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFK-YYMESLKADNDNFVLPLVGLGQMYIKRGDLE--------------ESKFCFEKVL  369 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHH-HHHHHHccCCCCccccccchhHHHHHhchHH--------------HHHHHHHHHH
Confidence            345668888888888888888876 445555555554    134455554444322              222222  33


Q ss_pred             hcCCCChhHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C
Q psy17691        111 ALSPDDGTTFSYIISVLLLI-----QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV-----F  180 (673)
Q Consensus       111 ~l~p~~~~~~~~~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-----~  180 (673)
                      ...|++......+++++...     ..++|..+..++++..|.+.++|..+|.++....-+.. +..|.+|+.+     .
T Consensus       370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~  448 (1018)
T KOG2002|consen  370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGK  448 (1018)
T ss_pred             HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCC
Confidence            45677777777777766532     56778888888888888888888888887766554444 7777777743     2


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI-----QPSF-----ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG  250 (673)
Q Consensus       181 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~  250 (673)
                      +--++.++|+|..++..|++++|...+.+|+..     +++.     ....+|+|.++..+++++.|.+.|+..++..|+
T Consensus       449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~  528 (1018)
T KOG2002|consen  449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG  528 (1018)
T ss_pred             CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence            333677788888888888888888888887766     1211     224678888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHH
Q psy17691        251 FADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLL  284 (673)
Q Consensus       251 ~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~  284 (673)
                      +.+++..||......++..         +.++..++.++..+|
T Consensus       529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G  571 (1018)
T KOG2002|consen  529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLG  571 (1018)
T ss_pred             hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHH
Confidence            8888888875544444443         566777777776666

>PLN02789 farnesyltranstransferase

Probab=99.57  E-value=9.9e-14  Score=145.05  Aligned_cols=175  Identities=13%  Similarity=0.072  Sum_probs=155.4

Q ss_pred             cCCCChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHH
Q psy17691        112 LSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG-YIEEATRLYLKALEVFPEFAAAHSN  189 (673)
Q Consensus       112 l~p~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~  189 (673)
                      ..++...++.+...++. .++.++|+..+.++++++|++..+|...+.++..+| ++++++..++++++.+|++..+|++
T Consensus        32 y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         32 YTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            34455566655555554 779999999999999999999999999999999998 6899999999999999999999999


Q ss_pred             HHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Q psy17691        190 LASVLQQQGKL--TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG-  266 (673)
Q Consensus       190 la~~~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g-  266 (673)
                      .+.++...|+.  ++++.+++++++.+|++..+|..+|.++...|++++|++++.++++.+|.+..+|.+.+.+....| 
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~  191 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL  191 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc
Confidence            99999999874  788999999999999999999999999999999999999999999999999999999999987763 


Q ss_pred             --CCc-------------cccCCCCHHHHHHHHHH
Q psy17691        267 --KRG-------------FFIRTDLNSAYFWLLLL  286 (673)
Q Consensus       267 --~~~-------------l~l~p~~~~a~~~l~~~  286 (673)
                        .++             +.++|+|.++|..++.+
T Consensus       192 l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~l  226 (320)
T PLN02789        192 LGGLEAMRDSELKYTIDAILANPRNESPWRYLRGL  226 (320)
T ss_pred             cccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence              221             77899999998777643

>KOG1129|consensus

Probab=99.57  E-value=2.2e-14  Score=142.20  Aligned_cols=141  Identities=21%  Similarity=0.250  Sum_probs=70.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK  208 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  208 (673)
                      ++++++|.++|+.+++.+|.+.++...+|.-|+..++.+-|+.+|++.+++.-.+++.++|+|.+++..++++-++..|+
T Consensus       303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            44555555555555555555555444444445555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        209 EAIRIQPS---FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       209 ~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +++....+   -+++|+|+|.+....|++.-|..+|+-||..++++.+++.||+.+-.+.|+.+
T Consensus       383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~  446 (478)
T KOG1129|consen  383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDIL  446 (478)
T ss_pred             HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchH
Confidence            55444221   13445555555555555555555555555555555555555555544444443

>KOG1129|consensus

Probab=99.55  E-value=6.7e-14  Score=138.79  Aligned_cols=171  Identities=20%  Similarity=0.144  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691        119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG  198 (673)
Q Consensus       119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  198 (673)
                      ...+...|.+.++.+.|+..|.+.++..|.+...+..++.++..++++++|.++|+.+++.+|.+.++...+|.-|+..+
T Consensus       259 fllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~  338 (478)
T KOG1129|consen  259 FLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDN  338 (478)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCC
Confidence            33445666678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCCc------
Q psy17691        199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP---GFADAHSNLASIHKDSGKRG------  269 (673)
Q Consensus       199 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p---~~~~a~~~La~~~~~~g~~~------  269 (673)
                      +.+-|+.+|++.+++.-.+++.++|+|.|+...++++-++.+|++|+....   .-.++|+|||.+....|++.      
T Consensus       339 ~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf  418 (478)
T KOG1129|consen  339 NPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF  418 (478)
T ss_pred             ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence            999999999999999999999999999999999999999999999998743   34689999999999999987      


Q ss_pred             ---cccCCCCHHHHHHHHHHhhc
Q psy17691        270 ---FFIRTDLNSAYFWLLLLDAH  289 (673)
Q Consensus       270 ---l~l~p~~~~a~~~l~~~~~~  289 (673)
                         +.-++++.+++.||+++...
T Consensus       419 rlaL~~d~~h~ealnNLavL~~r  441 (478)
T KOG1129|consen  419 RLALTSDAQHGEALNNLAVLAAR  441 (478)
T ss_pred             HHHhccCcchHHHHHhHHHHHhh
Confidence               56789999999999987654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.55  E-value=1.9e-13  Score=133.63  Aligned_cols=125  Identities=16%  Similarity=0.159  Sum_probs=118.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL-QQQGK--LTDALL  205 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~eA~~  205 (673)
                      .++.++++..++++++.+|++.+.|..+|.+|...|++++|+..|+++++++|++..++.++|.++ ...|+  +++|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            447899999999999999999999999999999999999999999999999999999999999975 67787  599999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        206 HYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       206 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                      .++++++.+|++..+++++|..+.++|++++|+.+|+++++++|.+.+
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999999999887644

>KOG2002|consensus

Probab=99.55  E-value=8.1e-13  Score=147.56  Aligned_cols=258  Identities=17%  Similarity=0.101  Sum_probs=187.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhh
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVS   81 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~   81 (673)
                      ++.|...|.-+++..|+|..++++.|.+.+..|++..+..+|..+...                .....++..+.+|.++
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~i----------------np~~~aD~rIgig~Cf  209 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRI----------------NPACKADVRIGIGHCF  209 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhc----------------CcccCCCccchhhhHH
Confidence            467777788888888888888888887777777655555555443221                1123345556777777


Q ss_pred             hhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691         82 SDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVL----LLIQVSEAEECYNTALRLCPTHADSLNNLA  157 (673)
Q Consensus        82 ~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~----~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg  157 (673)
                      ..++....+..            .-..+.+++|....++..++.+.    ....+..+...+.++...++++|.+...|+
T Consensus       210 ~kl~~~~~a~~------------a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LA  277 (1018)
T KOG2002|consen  210 WKLGMSEKALL------------AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLA  277 (1018)
T ss_pred             HhccchhhHHH------------HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence            77665332211            11235567787766664444332    134678888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Q psy17691        158 NIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF-ADAYSNMGNTLKEMQD  233 (673)
Q Consensus       158 ~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~  233 (673)
                      .-++..|+|+.+......++...-..   ++.++.+|..|..+|++++|..+|.++++.++++ .-.++.+|+.|...|+
T Consensus       278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d  357 (1018)
T KOG2002|consen  278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD  357 (1018)
T ss_pred             HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch
Confidence            88888888888888888888765333   5568888888888888888888888888888887 6677888888888888


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-------------cccCCCCHHHHHHHHHHh
Q psy17691        234 IQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG-------------FFIRTDLNSAYFWLLLLD  287 (673)
Q Consensus       234 ~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~-------------l~l~p~~~~a~~~l~~~~  287 (673)
                      +++|+.+|++.++..|++.+...-||.+|...++-.             ++..|.+.++|..++.+.
T Consensus       358 le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~  424 (1018)
T KOG2002|consen  358 LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL  424 (1018)
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            888888888888888888888888888887775221             566788888887777443

>KOG1125|consensus

Probab=99.55  E-value=6.6e-14  Score=148.95  Aligned_cols=161  Identities=20%  Similarity=0.274  Sum_probs=147.0

Q ss_pred             HHhcCCCChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------
Q psy17691        109 CYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF-------  180 (673)
Q Consensus       109 ~~~l~p~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-------  180 (673)
                      +...+|++.++|..++.... .++-..|+..++++++++|++.+++..||..|...|.-.+|.+++.+.+...       
T Consensus       311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~  390 (579)
T KOG1125|consen  311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV  390 (579)
T ss_pred             HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence            55678999999987776654 6788899999999999999999999999999999999999999988886653       


Q ss_pred             ----------------------------------C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691        181 ----------------------------------P--EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM  224 (673)
Q Consensus       181 ----------------------------------p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  224 (673)
                                                        |  .+++++..||.+|.-.|+|++|+.+|+.||..+|++...|+.|
T Consensus       391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL  470 (579)
T KOG1125|consen  391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL  470 (579)
T ss_pred             ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence                                              3  3467888999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       225 g~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      |-.+..-.+.++|+..|++|+++.|++..+++|||..+..+|-|+
T Consensus       471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~yk  515 (579)
T KOG1125|consen  471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYK  515 (579)
T ss_pred             hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHH
Confidence            999999999999999999999999999999999999999999886

>KOG0550|consensus

Probab=99.54  E-value=9.7e-14  Score=141.88  Aligned_cols=238  Identities=20%  Similarity=0.228  Sum_probs=131.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC---------------cHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPN---------------FPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~---------------~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      +|.+|++.|..||++.|+++..|.+.+.++...|+++               ....+...++++...++..+|......+
T Consensus        64 ~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~  143 (486)
T KOG0550|consen   64 TYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSK  143 (486)
T ss_pred             hHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhh
Confidence            4789999999999999999999999999999998632               3333444444444444433332111100


Q ss_pred             -----Hhhc------CCCch---------hhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHH-HHH
Q psy17691         66 -----TREL------APGNR---------IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFS-YII  124 (673)
Q Consensus        66 -----~~~l------~p~~~---------~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~-~~~  124 (673)
                           +..+      .+.+.         ..-+.++..+++...+            ..+...-..+++.+..++. .+.
T Consensus       144 ~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a------------~~ea~~ilkld~~n~~al~vrg~  211 (486)
T KOG0550|consen  144 QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEA------------QSEAIDILKLDATNAEALYVRGL  211 (486)
T ss_pred             hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhH------------HHHHHHHHhcccchhHHHHhccc
Confidence                 0000      00000         0001111111111111            1112223344555544443 233


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHH
Q psy17691        125 SVLLLIQVSEAEECYNTALRLCPTHAD------------SLNNLANIKREQGYIEEATRLYLKALEVFPEF----AAAHS  188 (673)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~------------a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~  188 (673)
                      +++..++.+.|+.+|++++.++|++..            .+..-|+-.++.|++.+|.++|..+|.++|++    ...|.
T Consensus       212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~  291 (486)
T KOG0550|consen  212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG  291 (486)
T ss_pred             ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence            344456666666666666666665532            34455566666666666666666666666654    34556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG  250 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~  250 (673)
                      |.+.+...+|+..+|+..++.++++++....++...|.|+..++++++|++.|++|++...+
T Consensus       292 nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  292 NRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            66666666666666666666666666666666666666666666666666666666665444

>KOG2076|consensus

Probab=99.54  E-value=1.3e-12  Score=145.18  Aligned_cols=254  Identities=20%  Similarity=0.222  Sum_probs=187.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..+.++|+.+|.++.+|+.||.+|.++|+               |.+.+.|..++....++|.+++|.. ++.+
T Consensus       154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~-cy~r  232 (895)
T KOG2076|consen  154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY-CYSR  232 (895)
T ss_pred             CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH-HHHH
Confidence            47899999999999999999999999999999997               7778999999999999999999975 7888


Q ss_pred             HhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCC-CCh-----hHHHHHHHHHHcCCHHH
Q psy17691         66 TRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSP-DDG-----TTFSYIISVLLLIQVSE  134 (673)
Q Consensus        66 ~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p-~~~-----~~~~~~~~~~~~g~~~~  134 (673)
                      +++..|.+.   .....++...|....+              .+.+  ...+.| .+.     ..+..+..+...++-+.
T Consensus       233 AI~~~p~n~~~~~ers~L~~~~G~~~~A--------------m~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~  298 (895)
T KOG2076|consen  233 AIQANPSNWELIYERSSLYQKTGDLKRA--------------METFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER  298 (895)
T ss_pred             HHhcCCcchHHHHHHHHHHHHhChHHHH--------------HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            888888875   2335555555554332              2222  122233 111     11222233334455566


Q ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------------------
Q psy17691        135 AEECYNTALRLC--PTHADSLNNLANIKREQGYIEEATRLYLKALE----------------------------------  178 (673)
Q Consensus       135 A~~~~~~al~~~--p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~----------------------------------  178 (673)
                      |++.++.++...  -...+-++.++.++....+++.|......-..                                  
T Consensus       299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l  378 (895)
T KOG2076|consen  299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL  378 (895)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence            666666666622  11233444555555555555555544433322                                  


Q ss_pred             -----------------------------hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q psy17691        179 -----------------------------VFP-EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS-FADAYSNMGNT  227 (673)
Q Consensus       179 -----------------------------~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~  227 (673)
                                                   ..| ++.+.+..++..|.+.|++.+|+.+|..+....+. +..+|..+|.|
T Consensus       379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c  458 (895)
T KOG2076|consen  379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC  458 (895)
T ss_pred             hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence                                         112 23678899999999999999999999999887654 46799999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       228 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      |..+|.+++|+++|++++.+.|++.++...|+.++..+|+.+
T Consensus       459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~E  500 (895)
T KOG2076|consen  459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHE  500 (895)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHH
Confidence            999999999999999999999999999999999999999998

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.54  E-value=2.1e-13  Score=126.52  Aligned_cols=122  Identities=14%  Similarity=-0.016  Sum_probs=112.5

Q ss_pred             HHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy17691        108 FCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH  187 (673)
Q Consensus       108 ~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  187 (673)
                      .++.++|+.  .+..+..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++++|+++.++
T Consensus        18 ~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~   95 (144)
T PRK15359         18 QLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPV   95 (144)
T ss_pred             HHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence            355666664  445667778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM  231 (673)
Q Consensus       188 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~  231 (673)
                      +++|.++...|++++|+..|++++++.|+++..+.++|.+....
T Consensus        96 ~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         96 YQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.53  E-value=4.1e-14  Score=146.82  Aligned_cols=214  Identities=21%  Similarity=0.244  Sum_probs=104.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      ++++|+..|++.++.++.++..+..++.+ ...++++.+......+..  ..++                +........+
T Consensus        59 ~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~--~~~~----------------~~~l~~~l~~  119 (280)
T PF13429_consen   59 DYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYE--RDGD----------------PRYLLSALQL  119 (280)
T ss_dssp             ------------------------------------------------------------------------------H-
T ss_pred             ccccccccccccccccccccccccccccc-cccccccccccccccccc--cccc----------------cchhhHHHHH
Confidence            46889999999999999999999888888 677776665544433211  1111                0001111111


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHHHH--hc--CCCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCY--AL--SPDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNN  155 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~--~l--~p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  155 (673)
                      +...+..              .........  ..  .+++...|.. +..+...|+.++|+.+|+++++.+|++..+...
T Consensus       120 ~~~~~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~  185 (280)
T PF13429_consen  120 YYRLGDY--------------DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNA  185 (280)
T ss_dssp             HHHTT-H--------------HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             HHHHhHH--------------HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            2222211              111111111  12  2455666644 455667999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy17691        156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ  235 (673)
Q Consensus       156 Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  235 (673)
                      ++.++...|+++++.+.++...+..|.++..+..+|.++..+|++++|+.+|+++++.+|+++..+..+|.++...|+.+
T Consensus       186 l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~  265 (280)
T PF13429_consen  186 LAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD  265 (280)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999989999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy17691        236 GALQCYSRAIQI  247 (673)
Q Consensus       236 eA~~~~~~Al~l  247 (673)
                      +|...++++++.
T Consensus       266 ~A~~~~~~~~~~  277 (280)
T PF13429_consen  266 EALRLRRQALRL  277 (280)
T ss_dssp             ------------
T ss_pred             cccccccccccc
Confidence            999999998764

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.53  E-value=6.9e-13  Score=138.51  Aligned_cols=168  Identities=17%  Similarity=0.030  Sum_probs=135.4

Q ss_pred             hhHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17691        117 GTTFSYII-SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ  195 (673)
Q Consensus       117 ~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  195 (673)
                      +..|...+ .+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++.++|.++.
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  143 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44565444 45568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc------
Q psy17691        196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG------  269 (673)
Q Consensus       196 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~------  269 (673)
                      ..|++++|++.|+++++++|+++..... ..+....+++++|+..|++++...+..  .|. .+.++..+|+..      
T Consensus       144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~  219 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLME  219 (296)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHH
Confidence            9999999999999999999999742222 233456789999999998877553322  221 345555556553      


Q ss_pred             ---------cccCCCCHHHHHHHHHHhh
Q psy17691        270 ---------FFIRTDLNSAYFWLLLLDA  288 (673)
Q Consensus       270 ---------l~l~p~~~~a~~~l~~~~~  288 (673)
                               .++.|+.+++|+++|....
T Consensus       220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~  247 (296)
T PRK11189        220 RLKAGATDNTELAERLCETYFYLAKYYL  247 (296)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence                     3556777889999986543

>KOG0548|consensus

Probab=99.51  E-value=5.3e-13  Score=141.05  Aligned_cols=287  Identities=23%  Similarity=0.238  Sum_probs=200.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      +|+.|+.+|.+||.++|.|.-.|.+...+|..+|+               |+.+.+|..+|.++.-.|++++|.. .|..
T Consensus        17 d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~-ay~~   95 (539)
T KOG0548|consen   17 DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL-AYSE   95 (539)
T ss_pred             cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH-HHHH
Confidence            58899999999999999999999999999999996               8899999999999999999999986 5666


Q ss_pred             HhhcCCCchhh---hhhhhhhc----------------CCCccccc----------ccc-------cCCCCchhHHHH--
Q psy17691         66 TRELAPGNRIR---IGYVSSDF----------------GNHPTSHL----------MQS-------VPGMHNKSRVEI--  107 (673)
Q Consensus        66 ~~~l~p~~~~~---l~~~~~~l----------------~~~~~a~~----------~~~-------~~~~~~~~a~~~--  107 (673)
                      -+...|++...   +..++...                ...+....          +..       +.......++..  
T Consensus        96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~  175 (539)
T KOG0548|consen   96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKAD  175 (539)
T ss_pred             HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHH
Confidence            66777766422   11111000                00000000          000       000000000000  


Q ss_pred             -----------HH--H-----hcCC------------CChh---------HH-HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        108 -----------FC--Y-----ALSP------------DDGT---------TF-SYIISVLLLIQVSEAEECYNTALRLCP  147 (673)
Q Consensus       108 -----------~~--~-----~l~p------------~~~~---------~~-~~~~~~~~~g~~~~A~~~~~~al~~~p  147 (673)
                                 ..  .     ...|            +...         .. ..+...+...+++.|+++|.++++++ 
T Consensus       176 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-  254 (539)
T KOG0548|consen  176 GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-  254 (539)
T ss_pred             HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-
Confidence                       00  0     0011            0000         11 33455667889999999999999999 


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q psy17691        148 THADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS----  216 (673)
Q Consensus       148 ~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----  216 (673)
                      .+...+.+.+.+|+..|.+.+.+....++++..-..       ..+...+|..|...++++.|+.+|++++....+    
T Consensus       255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l  334 (539)
T KOG0548|consen  255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL  334 (539)
T ss_pred             hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH
Confidence            888888899999999999998888888877765443       223334566777778888888888888765322    


Q ss_pred             ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-----
Q psy17691        217 ----------------------FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG-----  269 (673)
Q Consensus       217 ----------------------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~-----  269 (673)
                                            -..--..-|+.+++.|+|.+|+.+|.+|+..+|+++..|.|.+.||.++|++.     
T Consensus       335 s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~D  414 (539)
T KOG0548|consen  335 SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKD  414 (539)
T ss_pred             HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHH
Confidence                                  22334456888888899999999999999999999999999999999998887     


Q ss_pred             ----cccCCCCHHHHHHHHHHhhc
Q psy17691        270 ----FFIRTDLNSAYFWLLLLDAH  289 (673)
Q Consensus       270 ----l~l~p~~~~a~~~l~~~~~~  289 (673)
                          ++++|++..+|+.-|.+..+
T Consensus       415 a~~~ieL~p~~~kgy~RKg~al~~  438 (539)
T KOG0548|consen  415 AKKCIELDPNFIKAYLRKGAALRA  438 (539)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHH
Confidence                78888888888887755443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.48  E-value=1.4e-12  Score=119.59  Aligned_cols=120  Identities=20%  Similarity=0.186  Sum_probs=115.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        137 ECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS  216 (673)
Q Consensus       137 ~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  216 (673)
                      +.|+++++.+|++..+.+.+|..+...|++++|...++++++.+|.+..++.++|.++...|++++|+..++++++.+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHS  256 (673)
Q Consensus       217 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~  256 (673)
                      ++..++++|.++...|++++|+..|+++++++|++.....
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  123 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE  123 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence            9999999999999999999999999999999999877543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1174|consensus

Probab=99.46  E-value=9.7e-12  Score=127.11  Aligned_cols=182  Identities=16%  Similarity=0.160  Sum_probs=146.4

Q ss_pred             HHHHhcCCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy17691        107 IFCYALSPDDGTTFS-YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA  185 (673)
Q Consensus       107 ~~~~~l~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~  185 (673)
                      ..++..++++...+. .+..+...++.++|+-.|+.|..+.|...+.|..|-.+|...|++.||....+.+++..|.++.
T Consensus       324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~  403 (564)
T KOG1174|consen  324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR  403 (564)
T ss_pred             HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence            346778888877774 4555667999999999999999999999999999999999999999998888888888888888


Q ss_pred             HHHHHH-HHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        186 AHSNLA-SVLQQ-QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK  263 (673)
Q Consensus       186 ~~~~la-~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~  263 (673)
                      ++..+| .++.. ----++|.++++++++++|....+-..++.++...|+++.++..+++++...|+ ...+..||.++.
T Consensus       404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~  482 (564)
T KOG1174|consen  404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMR  482 (564)
T ss_pred             hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHH
Confidence            888886 44433 333578888888888888888888888888888888888888888888887775 566778888888


Q ss_pred             HcCCCc---------cccCCCCHHHHHHHHHHhhc
Q psy17691        264 DSGKRG---------FFIRTDLNSAYFWLLLLDAH  289 (673)
Q Consensus       264 ~~g~~~---------l~l~p~~~~a~~~l~~~~~~  289 (673)
                      ..+.++         +.++|++..+.-.+-..+..
T Consensus       483 A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~  517 (564)
T KOG1174|consen  483 AQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS  517 (564)
T ss_pred             HhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence            877776         78888888776666555443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=1.1e-11  Score=123.34  Aligned_cols=203  Identities=17%  Similarity=0.181  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCc-------------------HHHHHHHHHHHHHcCChhhhcCCh
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNF-------------------PDAYCNLANALKEKGQINVLHKPP   62 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~-------------------a~a~~~la~~l~~~g~~~~A~~~~   62 (673)
                      -++|++.|...++.+|...+++..||+++.+.|..+.                   ..+.+.+|.-|+..|-++.|..  
T Consensus        51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~--  128 (389)
T COG2956          51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED--  128 (389)
T ss_pred             cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH--
Confidence            4789999999999999999999999999999996322                   2233444444444444333321  


Q ss_pred             hhHHhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHH-hcCCCC-hhHHHHH-HHHHHcCCHHHHHHHH
Q psy17691         63 YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY-ALSPDD-GTTFSYI-ISVLLLIQVSEAEECY  139 (673)
Q Consensus        63 ~~~~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~-~l~p~~-~~~~~~~-~~~~~~g~~~~A~~~~  139 (673)
                                                                  .+.. ...++. ..+...+ ..|....+|++|++.-
T Consensus       129 --------------------------------------------~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A  164 (389)
T COG2956         129 --------------------------------------------IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVA  164 (389)
T ss_pred             --------------------------------------------HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence                                                        0000 001111 1222222 2333355666666666


Q ss_pred             HHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691        140 NTALRLCPTH-----ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ  214 (673)
Q Consensus       140 ~~al~~~p~~-----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  214 (673)
                      ++..++.+..     +..+..|+..+....+++.|...+++|++.+|++..+-..+|.++...|+|+.|++.++.+++.+
T Consensus       165 ~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn  244 (389)
T COG2956         165 ERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN  244 (389)
T ss_pred             HHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence            6666665544     33455666666666666666666777776666666666666666666677777777776666666


Q ss_pred             CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        215 PSF-ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG  250 (673)
Q Consensus       215 p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~  250 (673)
                      |+. +++...|..||.++|+.++.+.++.++.+..++
T Consensus       245 ~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         245 PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence            664 455666666666667766666666666666554

>KOG0553|consensus

Probab=99.46  E-value=8.7e-13  Score=130.94  Aligned_cols=120  Identities=25%  Similarity=0.374  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK  229 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~  229 (673)
                      ++-+..-|+-+.+.++|++|+..|.+||+++|.++..|.|.+.+|.++|+++.|++.++.++.++|.+..+|..||.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            34456678888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        230 EMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       230 ~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      .+|++++|++.|++||+++|++...+.+|..+-.++++..
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999888877654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.45  E-value=4e-12  Score=128.25  Aligned_cols=154  Identities=15%  Similarity=0.083  Sum_probs=136.0

Q ss_pred             ChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q psy17691        116 DGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHA---DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA---AHS  188 (673)
Q Consensus       116 ~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~  188 (673)
                      ....+ ..+..++..|++++|+..|+++++.+|+++   .+++.+|.++..+|++++|+..|+++++.+|+++.   +++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            33444 555667789999999999999999999875   68899999999999999999999999999998865   799


Q ss_pred             HHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHH
Q psy17691        189 NLASVLQQQ--------GKLTDALLHYKEAIRIQPSFADAY-----------------SNMGNTLKEMQDIQGALQCYSR  243 (673)
Q Consensus       189 ~la~~~~~~--------g~~~eA~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~eA~~~~~~  243 (673)
                      .+|.++...        |++++|++.|+++++.+|++...+                 ..+|.+|..+|++++|+..|++
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~  191 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET  191 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            999999876        889999999999999999986432                 4678899999999999999999


Q ss_pred             HHHhCCCC---HHHHHHHHHHHHHcCCCc
Q psy17691        244 AIQINPGF---ADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       244 Al~l~p~~---~~a~~~La~~~~~~g~~~  269 (673)
                      +++..|+.   ..+++.++.++..+|+++
T Consensus       192 al~~~p~~~~~~~a~~~l~~~~~~lg~~~  220 (235)
T TIGR03302       192 VVENYPDTPATEEALARLVEAYLKLGLKD  220 (235)
T ss_pred             HHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence            99997764   589999999999999976

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG4162|consensus

Probab=99.45  E-value=1.1e-11  Score=135.71  Aligned_cols=250  Identities=19%  Similarity=0.253  Sum_probs=180.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ----------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~----------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ..++++.+++|++.+|+|+.+.+.++.-|..+++                -+.+.+|..+|.++..++++.+|.... ..
T Consensus       460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv-d~  538 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV-DA  538 (799)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH-HH
Confidence            4689999999999999999999999999888775                567889999999999999998887532 22


Q ss_pred             HhhcCCCch-hhhhhhhhhc--CCCccc------------------------cccc-----ccCCCCchhHH--------
Q psy17691         66 TRELAPGNR-IRIGYVSSDF--GNHPTS------------------------HLMQ-----SVPGMHNKSRV--------  105 (673)
Q Consensus        66 ~~~l~p~~~-~~l~~~~~~l--~~~~~a------------------------~~~~-----~~~~~~~~~a~--------  105 (673)
                      +..-.++|. ...+.+...+  ++...+                        ...+     +.......++.        
T Consensus       539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~  618 (799)
T KOG4162|consen  539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS  618 (799)
T ss_pred             HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence            222222211 0001100000  000000                        0000     00000000000        


Q ss_pred             --HHHHH-----------hcCCCChh-------HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        106 --EIFCY-----------ALSPDDGT-------TFSYIISV-LLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG  164 (673)
Q Consensus       106 --~~~~~-----------~l~p~~~~-------~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g  164 (673)
                        +....           ...|....       .|..+..+ ...++.++|..++.++-+++|..+..|+..|.++..+|
T Consensus       619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~  698 (799)
T KOG4162|consen  619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG  698 (799)
T ss_pred             HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence              00000           01122222       23333333 34778899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691        165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALL--HYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYS  242 (673)
Q Consensus       165 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~--~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~  242 (673)
                      +++||.+.|..|+.++|++......+|.++.+.|+..-|.+  .+..+++++|.+.++|+.+|.++.++|+.++|.++|+
T Consensus       699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~  778 (799)
T KOG4162|consen  699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ  778 (799)
T ss_pred             hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence            99999999999999999999999999999999998877777  9999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCH
Q psy17691        243 RAIQINPGFA  252 (673)
Q Consensus       243 ~Al~l~p~~~  252 (673)
                      .|+++++.++
T Consensus       779 aa~qLe~S~P  788 (799)
T KOG4162|consen  779 AALQLEESNP  788 (799)
T ss_pred             HHHhhccCCC
Confidence            9999988765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.45  E-value=4.1e-12  Score=124.28  Aligned_cols=91  Identities=20%  Similarity=0.169  Sum_probs=84.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIK-REQGY--IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALL  205 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~-~~~g~--~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  205 (673)
                      .|++++|+.+|+++++++|+++.++..+|.++ ...|+  +++|.+.++++++.+|++..+++++|..+...|++++|+.
T Consensus        86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~  165 (198)
T PRK10370         86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE  165 (198)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence            34899999999999999999999999999975 67787  5999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHH
Q psy17691        206 HYKEAIRIQPSFAD  219 (673)
Q Consensus       206 ~~~~al~~~p~~~~  219 (673)
                      +|+++++..|.+..
T Consensus       166 ~~~~aL~l~~~~~~  179 (198)
T PRK10370        166 LWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHhhCCCCcc
Confidence            99999999987643

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.44  E-value=7e-12  Score=126.48  Aligned_cols=129  Identities=15%  Similarity=0.120  Sum_probs=112.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH--
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHAD---SLNNLANIKREQ--------GYIEEATRLYLKALEVFPEFAAAH--  187 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~Lg~~~~~~--------g~~~eA~~~~~~al~~~p~~~~~~--  187 (673)
                      ..+..++..|++++|+..|+++++.+|+++.   +++.+|.++...        |++++|++.|+++++.+|++...+  
T Consensus        75 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a  154 (235)
T TIGR03302        75 DLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDA  154 (235)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHH
Confidence            4456667799999999999999999998766   799999999886        889999999999999999985432  


Q ss_pred             ---------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        188 ---------------SNLASVLQQQGKLTDALLHYKEAIRIQPSF---ADAYSNMGNTLKEMQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       188 ---------------~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p  249 (673)
                                     ..+|..+..+|++++|+..|+++++..|+.   +.++.++|.++..+|++++|..+++......|
T Consensus       155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence                           467889999999999999999999997764   58999999999999999999999888765554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0548|consensus

Probab=99.43  E-value=5.3e-12  Score=133.60  Aligned_cols=235  Identities=22%  Similarity=0.252  Sum_probs=168.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      +++.|+++|.++++++ .+...+.+.+.+|...|..........-   ..+.|+...+......++.       ..+|..
T Consensus       239 ~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~---a~E~gre~rad~klIak~~-------~r~g~a  307 (539)
T KOG0548|consen  239 DFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEK---AVEVGRELRADYKLIAKAL-------ARLGNA  307 (539)
T ss_pred             hHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHH---HHHHhHHHHHHHHHHHHHH-------HHhhhh
Confidence            3788999999999999 9999999999999999952211111111   0111111000000000000       001111


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIK  160 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~  160 (673)
                      +...+.              +..++..+...+.+...     -...-.....++++...+...-.+|+-..-...-|+.+
T Consensus       308 ~~k~~~--------------~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~  368 (539)
T KOG0548|consen  308 YTKRED--------------YEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEA  368 (539)
T ss_pred             hhhHHh--------------HHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHH
Confidence            111111              11112222111111100     11222345677777777777778888888888889999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691        161 REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC  240 (673)
Q Consensus       161 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~  240 (673)
                      +..|+|.+|+..|.+++..+|+++..|.|.|.+|.++|++..|++.++++++++|++..+|...|.++..+.+|++|.+.
T Consensus       369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea  448 (539)
T KOG0548|consen  369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA  448 (539)
T ss_pred             HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        241 YSRAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       241 ~~~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      |+++++.+|++.++.-.+..|...+
T Consensus       449 y~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  449 YQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999888764

>KOG1840|consensus

Probab=99.41  E-value=1.7e-11  Score=133.89  Aligned_cols=211  Identities=23%  Similarity=0.275  Sum_probs=160.8

Q ss_pred             CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCC
Q psy17691          1 LIDLAIDTYRRAIEL--------QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPG   72 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l--------~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~   72 (673)
                      +|++|+..++.|++.        .|.-......+|.+|..+++++.+...|..+.....                     
T Consensus       214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e---------------------  272 (508)
T KOG1840|consen  214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE---------------------  272 (508)
T ss_pred             cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---------------------
Confidence            589999999999998        444344444466666666655555544444433321                     


Q ss_pred             chhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCC---ChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCC-
Q psy17691         73 NRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPD---DGTTFSY-IISVLLLIQVSEAEECYNTALRLCP-  147 (673)
Q Consensus        73 ~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~---~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p-  147 (673)
                                                           ....++   -+..+.. +..++..|++++|..++++|+++.. 
T Consensus       273 -------------------------------------~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  273 -------------------------------------EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             -------------------------------------HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence                                                 112222   2334443 3456679999999999999999842 


Q ss_pred             -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        148 -------THADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIR  212 (673)
Q Consensus       148 -------~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  212 (673)
                             .-...+.+++.++..++++++|+.++++++++.        +.-+..+.+||.+|+.+|++++|.+.|+++++
T Consensus       316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence                   234568888999999999999999999999873        23367899999999999999999999999998


Q ss_pred             hC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCCc
Q psy17691        213 IQ--------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI-------NPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       213 ~~--------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l-------~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +.        +.....++++|..|.+++++++|.+.|.++..+       .|+-...+.||+.+|..+|+++
T Consensus       396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e  467 (508)
T KOG1840|consen  396 ILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE  467 (508)
T ss_pred             HHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence            74        233568899999999999999999999999876       3455678999999999999997

>KOG2003|consensus

Probab=99.41  E-value=1e-11  Score=127.71  Aligned_cols=155  Identities=21%  Similarity=0.240  Sum_probs=143.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691        130 IQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE  209 (673)
Q Consensus       130 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  209 (673)
                      .++.+|.++...++.++..++.++.+.|++-+..|++++|.+.|++++..+....++++|+|..+..+|+.++|+++|-+
T Consensus       470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k  549 (840)
T KOG2003|consen  470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK  549 (840)
T ss_pred             cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHH
Q psy17691        210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAY  280 (673)
Q Consensus       210 al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~  280 (673)
                      .-.+--++.+++..++.+|..+.+...|+++|.++..+-|+++.++..|+.+|.+.|+..         .+..|-+-+..
T Consensus       550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i  629 (840)
T KOG2003|consen  550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI  629 (840)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH
Confidence            988888999999999999999999999999999999999999999999999999988865         45566666655


Q ss_pred             HHHH
Q psy17691        281 FWLL  284 (673)
Q Consensus       281 ~~l~  284 (673)
                      -||+
T Consensus       630 ewl~  633 (840)
T KOG2003|consen  630 EWLA  633 (840)
T ss_pred             HHHH
Confidence            5555

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.39  E-value=1.7e-11  Score=119.66  Aligned_cols=161  Identities=19%  Similarity=0.181  Sum_probs=151.9

Q ss_pred             HHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy17691        109 CYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS  188 (673)
Q Consensus       109 ~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  188 (673)
                      ....+|++.........++..|+-+++..+..++...+|.+..++..+|......|+|.+|+..++++..++|++.++|+
T Consensus        59 ~~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~  138 (257)
T COG5010          59 AVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN  138 (257)
T ss_pred             HHhcCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence            34467888777666677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      .+|.+|.+.|+.++|...|.+++++.|+++.+.+|+|..|.-.|+++.|..++.++....+.+..+..||+.+...+|++
T Consensus       139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~  218 (257)
T COG5010         139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF  218 (257)
T ss_pred             HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c
Q psy17691        269 G  269 (673)
Q Consensus       269 ~  269 (673)
                      +
T Consensus       219 ~  219 (257)
T COG5010         219 R  219 (257)
T ss_pred             H
Confidence            7

>KOG2003|consensus

Probab=99.38  E-value=3.4e-11  Score=123.96  Aligned_cols=224  Identities=18%  Similarity=0.146  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCc---------------HHHHHHHHHHHHHcCChhhhcCChhhHH
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNF---------------PDAYCNLANALKEKGQINVLHKPPYKYT   66 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~---------------a~a~~~la~~l~~~g~~~~A~~~~~~~~   66 (673)
                      +.+|-.+-..|+.++..++.++.+.|++-+..|+.+.               .+++|++|..+..+|+.++|+...++  
T Consensus       472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k--  549 (840)
T KOG2003|consen  472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK--  549 (840)
T ss_pred             hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH--
Confidence            5677888888888888888888888888888886333               34455555555555555555431111  


Q ss_pred             hhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q psy17691         67 RELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRL  145 (673)
Q Consensus        67 ~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~  145 (673)
                                                                .-.+--++.+.+..+...+. +.+..+|+++|-++..+
T Consensus       550 ------------------------------------------lh~il~nn~evl~qianiye~led~aqaie~~~q~~sl  587 (840)
T KOG2003|consen  550 ------------------------------------------LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL  587 (840)
T ss_pred             ------------------------------------------HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence                                                      11122345556655555554 78999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       146 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  225 (673)
                      -|+++.++..||.+|-+.|+-.+|.+++-...+..|.+.+..-.||..|....-+++|+.+|+++--+.|+...-...++
T Consensus       588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmia  667 (840)
T KOG2003|consen  588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIA  667 (840)
T ss_pred             CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       226 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      .|+.+.|+|.+|.+.|+...+..|.+.+.+.-|..+.-.+|-.+
T Consensus       668 sc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d  711 (840)
T KOG2003|consen  668 SCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD  711 (840)
T ss_pred             HHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence            99999999999999999999999999999888888877777543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.38  E-value=1.3e-11  Score=113.20  Aligned_cols=109  Identities=16%  Similarity=0.039  Sum_probs=102.0

Q ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        140 NTALRLC-PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA  218 (673)
Q Consensus       140 ~~al~~~-p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  218 (673)
                      .....+. ++..+..+.+|..+.+.|++++|+..|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++
T Consensus        24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            3445566 778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691        219 DAYSNMGNTLKEMQDIQGALQCYSRAIQIN  248 (673)
Q Consensus       219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~  248 (673)
                      ..+.++|.|+...|+.++|++.|+.++...
T Consensus       104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        104 QAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999886

>TIGR00540 hemY_coli hemY protein

Probab=99.38  E-value=1.9e-10  Score=125.87  Aligned_cols=253  Identities=11%  Similarity=0.016  Sum_probs=174.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHH----------------HHHHHHHHcCChhhhcCChhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYC----------------NLANALKEKGQINVLHKPPYK   64 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~----------------~la~~l~~~g~~~~A~~~~~~   64 (673)
                      +++.|.+.+.++.+..|+...++...|.++..+|+++.+..++                ..+..+...|++++|.. .++
T Consensus        99 ~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~-~l~  177 (409)
T TIGR00540        99 DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH-GVD  177 (409)
T ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH-HHH
Confidence            4789999999999999999999999999999999744333333                34666667788877765 456


Q ss_pred             HHhhcCCCchh---hhhhhhhhcCCCcccccccccCCCCchhHHHHHH--HhcCCCChhHHHH----H-HHHHHcCCHHH
Q psy17691         65 YTRELAPGNRI---RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC--YALSPDDGTTFSY----I-ISVLLLIQVSE  134 (673)
Q Consensus        65 ~~~~l~p~~~~---~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~--~~l~p~~~~~~~~----~-~~~~~~g~~~~  134 (673)
                      ......|++..   .++.++...++...+              ...+.  ......++..+..    . ...+..+..++
T Consensus       178 ~l~~~~P~~~~~l~ll~~~~~~~~d~~~a--------------~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~  243 (409)
T TIGR00540       178 KLLEMAPRHKEVLKLAEEAYIRSGAWQAL--------------DDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE  243 (409)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHhhHHHH--------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66666777652   345555555543222              11111  1111122221111    1 11123334455


Q ss_pred             HHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHH
Q psy17691        135 AEECYNTALRLCP----THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH--SNLASVLQQQGKLTDALLHYK  208 (673)
Q Consensus       135 A~~~~~~al~~~p----~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~eA~~~~~  208 (673)
                      +.+.+.++.+..|    +++.++..++..+...|++++|.+.++++++..|++....  ..........++.+++++.++
T Consensus       244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e  323 (409)
T TIGR00540       244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE  323 (409)
T ss_pred             CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence            5567777777777    5788888899999999999999999999999888886532  223333344578888899999


Q ss_pred             HHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        209 EAIRIQPSFA--DAYSNMGNTLKEMQDIQGALQCYS--RAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       209 ~al~~~p~~~--~~~~~lg~~~~~~g~~~eA~~~~~--~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ++++.+|+++  ..+..+|.++.++|++++|.++|+  ++++.+|+... +..+|.++.+.|+.+
T Consensus       324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~  387 (409)
T TIGR00540       324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKA  387 (409)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHH
Confidence            9999999998  888889999999999999999999  57778887655 558899998888754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.38  E-value=3.5e-11  Score=131.70  Aligned_cols=235  Identities=12%  Similarity=0.031  Sum_probs=168.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFP-DAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYK   64 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~-~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~   64 (673)
                      ++++|..+|+++.+..|++. .+....+.++...|+               |++..++..++.++...|++++|.. .+.
T Consensus       133 ~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~-~l~  211 (409)
T TIGR00540       133 DEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDD-IID  211 (409)
T ss_pred             CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH-HHH
Confidence            36788899999998888875 566667888888886               7788888889999999999887764 344


Q ss_pred             HHhhcCCCchhhhh----hhhhh-cCCCcccccccccCCCCchhHHHHHHHhcCC----CChhHH-HHHHHHHHcCCHHH
Q psy17691         65 YTRELAPGNRIRIG----YVSSD-FGNHPTSHLMQSVPGMHNKSRVEIFCYALSP----DDGTTF-SYIISVLLLIQVSE  134 (673)
Q Consensus        65 ~~~~l~p~~~~~l~----~~~~~-l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p----~~~~~~-~~~~~~~~~g~~~~  134 (673)
                      ...+..........    ..+.. +..   .      ........+.. .....|    ++...+ ..+..+...|++++
T Consensus       212 ~l~k~~~~~~~~~~~l~~~a~~~~l~~---~------~~~~~~~~L~~-~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~  281 (409)
T TIGR00540       212 NMAKAGLFDDEEFADLEQKAEIGLLDE---A------MADEGIDGLLN-WWKNQPRHRRHNIALKIALAEHLIDCDDHDS  281 (409)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHH---H------HHhcCHHHHHH-HHHHCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence            44433211111000    00000 000   0      00000011111 112233    355555 55566778999999


Q ss_pred             HHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--
Q psy17691        135 AEECYNTALRLCPTHADSL--NNLANIKREQGYIEEATRLYLKALEVFPEFA--AAHSNLASVLQQQGKLTDALLHYK--  208 (673)
Q Consensus       135 A~~~~~~al~~~p~~~~a~--~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~~~--  208 (673)
                      |++.++++++..|++....  ..........++.+++++.++++++.+|+++  ..+..+|.++++.|++++|.++|+  
T Consensus       282 A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a  361 (409)
T TIGR00540       282 AQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV  361 (409)
T ss_pred             HHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence            9999999999999987532  2233334456889999999999999999999  889999999999999999999999  


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       209 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      ++++..|++.. +..+|.++.++|+.++|.++|++++..
T Consensus       362 ~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       362 AACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            68888887655 669999999999999999999998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.38  E-value=1.2e-10  Score=135.55  Aligned_cols=156  Identities=10%  Similarity=-0.022  Sum_probs=123.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------C
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCP------THADSLNNLANIKREQGYIEEATRLYLKALEVFP---------------E  182 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p---------------~  182 (673)
                      ..++..+++++|+.+|++++..+|      ........|...|.+.++|++|..++++..+..|               +
T Consensus       335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d  414 (822)
T PRK14574        335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD  414 (822)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence            344567778888888888877552      2333356777888888888888888888877443               2


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       183 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~  262 (673)
                      .......++.++...|++.+|++.+++.+...|.|..++..+|.++...|++.+|++.+++++.++|++..+...++.++
T Consensus       415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a  494 (822)
T PRK14574        415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA  494 (822)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence            35677778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCCc---------cccCCCCHHH
Q psy17691        263 KDSGKRG---------FFIRTDLNSA  279 (673)
Q Consensus       263 ~~~g~~~---------l~l~p~~~~a  279 (673)
                      .++|++.         +...|+++..
T Consensus       495 l~l~e~~~A~~~~~~l~~~~Pe~~~~  520 (822)
T PRK14574        495 MALQEWHQMELLTDDVISRSPEDIPS  520 (822)
T ss_pred             HhhhhHHHHHHHHHHHHhhCCCchhH
Confidence            8888887         5677887754

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.37  E-value=5.2e-11  Score=129.76  Aligned_cols=235  Identities=11%  Similarity=0.095  Sum_probs=158.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAY-CNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYK   64 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~-~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~   64 (673)
                      ++++|..+|+++.+.+|++..+. ...+.++...|+               |++..++..++.++...|++++|.. .+.
T Consensus       133 ~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~-~l~  211 (398)
T PRK10747        133 DEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD-ILP  211 (398)
T ss_pred             CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH-HHH
Confidence            36778888888888888775433 344777777775               6677777777888888888777653 222


Q ss_pred             HHhhcCCCchhhhh----hhhhhcCCCcccccccccCCCCchhHHHHHHH---hcCCCChhHH-HHHHHHHHcCCHHHHH
Q psy17691         65 YTRELAPGNRIRIG----YVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY---ALSPDDGTTF-SYIISVLLLIQVSEAE  136 (673)
Q Consensus        65 ~~~~l~p~~~~~l~----~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~---~l~p~~~~~~-~~~~~~~~~g~~~~A~  136 (673)
                      ...+....+.....    ..+..+-        .........+.+...-.   ...|+++... .++..+...|+.++|.
T Consensus       212 ~l~k~~~~~~~~~~~l~~~a~~~l~--------~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~  283 (398)
T PRK10747        212 SMAKAHVGDEEHRAMLEQQAWIGLM--------DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ  283 (398)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHH--------HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence            22222211110000    0000000        00000000111111100   1234455554 5566677899999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        137 ECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS  216 (673)
Q Consensus       137 ~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  216 (673)
                      ..++++++. +.++.....++.+  ..++.+++++..++.++.+|+++..+..+|.++...+++++|.++|+++++..|+
T Consensus       284 ~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~  360 (398)
T PRK10747        284 QIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD  360 (398)
T ss_pred             HHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            999999994 5566555555554  4489999999999999999999999999999999999999999999999999998


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691        217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQIN  248 (673)
Q Consensus       217 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~  248 (673)
                      + ..+..++.++.++|+.++|.++|++++.+.
T Consensus       361 ~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        361 A-YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            5 456689999999999999999999998764

>KOG0553|consensus

Probab=99.37  E-value=5.8e-12  Score=125.16  Aligned_cols=115  Identities=23%  Similarity=0.256  Sum_probs=107.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      ..+..+++.++|++|+..|.+||+++|+++..|.+.+.+|.++|.++.|++.++.+++++|.+..+|..||.+|..+|++
T Consensus        86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence            45567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy17691        201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ  235 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  235 (673)
                      ++|++.|+++|+++|++...+.+|..+-.++++..
T Consensus       166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999988888887777666544

>KOG0495|consensus

Probab=99.36  E-value=2.3e-10  Score=122.92  Aligned_cols=243  Identities=19%  Similarity=0.144  Sum_probs=185.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHH
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKYT   66 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~   66 (673)
                      ++-|+..|..+|+..|.....|...+..-..-|.               |.....|...+..+...|+...|.. ....+
T Consensus       532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~-il~~a  610 (913)
T KOG0495|consen  532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARV-ILDQA  610 (913)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHH-HHHHH
Confidence            4567888999999999999998888777766665               4444556666666677777666543 33334


Q ss_pred             hhcCCCc-hhhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691         67 RELAPGN-RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVLLLIQVSEAEECYNTAL  143 (673)
Q Consensus        67 ~~l~p~~-~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al  143 (673)
                      .+..|++ .++++.+.....+.            .++.+...+  +....+.....+........+++.++|+.++++++
T Consensus       611 f~~~pnseeiwlaavKle~en~------------e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l  678 (913)
T KOG0495|consen  611 FEANPNSEEIWLAAVKLEFEND------------ELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEAL  678 (913)
T ss_pred             HHhCCCcHHHHHHHHHHhhccc------------cHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence            4444443 24444333332221            122222333  22233333333344455556899999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        144 RLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN  223 (673)
Q Consensus       144 ~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  223 (673)
                      +..|+....|..+|+++.++++.+.|.+.|...++..|.....|..|+.+-.+.|+.-+|...++++.-.+|++...|..
T Consensus       679 k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle  758 (913)
T KOG0495|consen  679 KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE  758 (913)
T ss_pred             HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       224 lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      .-.+-.+.|..+.|.....+||+..|++...|..
T Consensus       759 ~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaE  792 (913)
T KOG0495|consen  759 SIRMELRAGNKEQAELLMAKALQECPSSGLLWAE  792 (913)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHH
Confidence            9999999999999999999999998887665543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.35  E-value=1e-10  Score=114.29  Aligned_cols=124  Identities=23%  Similarity=0.187  Sum_probs=118.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      .++......|++.+|+..++++..+.|++.++|..+|.+|.+.|++++|...|.+++++.|+.+.+.+|+|..+.-.|++
T Consensus       105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~  184 (257)
T COG5010         105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL  184 (257)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence            46677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA  244 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~A  244 (673)
                      +.|..++..+....+.+..+..|++.+...+|++++|...-.+-
T Consensus       185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence            99999999999999999999999999999999999998876653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.35  E-value=3e-11  Score=138.14  Aligned_cols=139  Identities=14%  Similarity=0.070  Sum_probs=131.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEA  210 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  210 (673)
                      ...+++.-.......+|++++++.+||.+..+.|++++|...++.+++++|++..++.+++.++.+++++++|+..++++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~  146 (694)
T PRK15179         67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY  146 (694)
T ss_pred             chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            44455555555566689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        211 IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       211 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ++.+|+++.+++.+|.++.++|++++|+++|++++..+|+++.++.++|.++...|+.+
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~  205 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW  205 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999987

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.32  E-value=1.3e-10  Score=124.72  Aligned_cols=147  Identities=14%  Similarity=0.038  Sum_probs=118.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17691        122 YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE----EATRLYLKALEVFPEFAAAHSNLASVLQQQ  197 (673)
Q Consensus       122 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~----eA~~~~~~al~~~p~~~~~~~~la~~~~~~  197 (673)
                      .+..+...|++++|...++++++.+|++..++.. +..+...|++.    .+.+.+......+|.....+..+|.++..+
T Consensus        49 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~  127 (355)
T cd05804          49 EALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEA  127 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHc
Confidence            3445567889999999999999999999887775 55555554444    444444443356677778888899999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCCc
Q psy17691        198 GKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA----DAHSNLASIHKDSGKRG  269 (673)
Q Consensus       198 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~----~a~~~La~~~~~~g~~~  269 (673)
                      |++++|+..++++++++|+++.++..+|.++...|++++|+.++++++...|...    ..+..++.++...|+++
T Consensus       128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~  203 (355)
T cd05804         128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE  203 (355)
T ss_pred             CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999999999999999999999999999999999876433    34667899999999886

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840|consensus

Probab=99.32  E-value=1.5e-10  Score=126.50  Aligned_cols=192  Identities=22%  Similarity=0.301  Sum_probs=151.8

Q ss_pred             CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCC
Q psy17691          1 LIDLAIDTYRRAIEL--------QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPG   72 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l--------~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~   72 (673)
                      +|++|+..|++|+.+        +|.-+..+.+||.+|...|++.++..++..|......-.                  
T Consensus       256 k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~------------------  317 (508)
T KOG1840|consen  256 KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL------------------  317 (508)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh------------------
Confidence            588999999999986        455677889999999999988888888877766553300                  


Q ss_pred             chhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhC-----
Q psy17691         73 NRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLC-----  146 (673)
Q Consensus        73 ~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~-----  146 (673)
                                                           ....++-...+... ..+..++++++|+.++++++++.     
T Consensus       318 -------------------------------------~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  318 -------------------------------------GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             -------------------------------------ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence                                                 00111122233333 33445889999999999999973     


Q ss_pred             ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q psy17691        147 ---PTHADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI--  213 (673)
Q Consensus       147 ---p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--  213 (673)
                         +.-+..+.+||.+|..+|++++|.+.|++++++.        +.....+.++|..|.+.+++++|.+.|.+++.+  
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~  440 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK  440 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence               2336689999999999999999999999999874        334678899999999999999999999999876  


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        214 -----QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       214 -----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                           .|+....+.|||.+|..+|++++|+++.++++..
T Consensus       441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence                 3445678999999999999999999999998854

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.32  E-value=5.7e-11  Score=108.76  Aligned_cols=111  Identities=18%  Similarity=0.076  Sum_probs=98.0

Q ss_pred             hcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy17691        111 ALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN  189 (673)
Q Consensus       111 ~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  189 (673)
                      ..+|++.... ..+..++..|++++|+..++++++.+|++..++..+|.++..+|++++|+.+++++++.+|.+...+++
T Consensus        11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   90 (135)
T TIGR02552        11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH   90 (135)
T ss_pred             cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            3455554443 344445567799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691        190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAY  221 (673)
Q Consensus       190 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  221 (673)
                      +|.++...|++++|+..++++++.+|++....
T Consensus        91 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        91 AAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            99999999999999999999999999886644

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4162|consensus

Probab=99.31  E-value=4.8e-10  Score=123.17  Aligned_cols=282  Identities=17%  Similarity=0.156  Sum_probs=207.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------------CCcHHHH-HHHHHHHHHcCChhhhcCCh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ-----------------PNFPDAY-CNLANALKEKGQINVLHKPP   62 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~-----------------~~~a~a~-~~la~~l~~~g~~~~A~~~~   62 (673)
                      +|+.+.+.|++++..--...+.|+.++.+|...|.                 |.....+ ..-..++...+..++++...
T Consensus       338 ~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA  417 (799)
T KOG4162|consen  338 QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYA  417 (799)
T ss_pred             HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHH
Confidence            36788889999988888888899999999988885                 2223333 33334445566666665433


Q ss_pred             hhHHhh-------cCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHH-HcCCH
Q psy17691         63 YKYTRE-------LAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVL-LLIQV  132 (673)
Q Consensus        63 ~~~~~~-------l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~-~~g~~  132 (673)
                      .+.+..       +.|--...+|..|...........   ......++.+..+  +.+.+|+++.+.+++...+ ..++.
T Consensus       418 ~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s---eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l  494 (799)
T KOG4162|consen  418 QKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS---ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQL  494 (799)
T ss_pred             HHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH---HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhH
Confidence            332221       222223344444443332221110   0111122333333  6678899988877766555 58899


Q ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------------------
Q psy17691        133 SEAEECYNTALRL-CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----------------------------  183 (673)
Q Consensus       133 ~~A~~~~~~al~~-~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----------------------------  183 (673)
                      +.|....++++++ ..+++.+|..++.++..++++.+|+.....++.-.|+|                            
T Consensus       495 ~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L  574 (799)
T KOG4162|consen  495 TSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKL  574 (799)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHH
Confidence            9999999999999 55678999999999999999999988887776654441                            


Q ss_pred             ---------------------------------------------------------------------------HHHHH
Q psy17691        184 ---------------------------------------------------------------------------AAAHS  188 (673)
Q Consensus       184 ---------------------------------------------------------------------------~~~~~  188 (673)
                                                                                                 ...|.
T Consensus       575 ~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwl  654 (799)
T KOG4162|consen  575 ALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWL  654 (799)
T ss_pred             HHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHH
Confidence                                                                                       02345


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      ..+..+...++.++|.-++.++-.+.|..+..|+..|.++...|+.++|.+.|..|+.++|++......+|.++.+.|+.
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~  734 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP  734 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc
Confidence            56677777888888888999999999999999999999999999999999999999999999999999999999999977


Q ss_pred             c-----------cccCCCCHHHHHHHHH
Q psy17691        269 G-----------FFIRTDLNSAYFWLLL  285 (673)
Q Consensus       269 ~-----------l~l~p~~~~a~~~l~~  285 (673)
                      .           ++++|.++++|+.+|-
T Consensus       735 ~la~~~~~L~dalr~dp~n~eaW~~LG~  762 (799)
T KOG4162|consen  735 RLAEKRSLLSDALRLDPLNHEAWYYLGE  762 (799)
T ss_pred             chHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            5           7899999999999983

>KOG0624|consensus

Probab=99.29  E-value=1.6e-10  Score=115.84  Aligned_cols=173  Identities=15%  Similarity=0.140  Sum_probs=148.7

Q ss_pred             HHhcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---
Q psy17691        109 CYALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA---  184 (673)
Q Consensus       109 ~~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~---  184 (673)
                      ++..+|++..++ ..+..++.+|+-.-|+.-+.+++++.|+...+....|.++.++|++++|+..|+.+++.+|++.   
T Consensus        64 Ave~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~  143 (504)
T KOG0624|consen   64 AVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL  143 (504)
T ss_pred             HHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH
Confidence            344566666655 4556777899999999999999999999999999999999999999999999999999999652   


Q ss_pred             HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        185 AAHSNL------------ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       185 ~~~~~l------------a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~  252 (673)
                      +++..+            ...+...|++..|++...+.|++.|-++..+...+.||...|+...|+..++.+-++..++.
T Consensus       144 eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnT  223 (504)
T KOG0624|consen  144 EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNT  223 (504)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccch
Confidence            233222            23345678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCc---------cccCCCCHHHHH
Q psy17691        253 DAHSNLASIHKDSGKRG---------FFIRTDLNSAYF  281 (673)
Q Consensus       253 ~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~  281 (673)
                      +.++.++.++...|+.+         |+++||+-..|-
T Consensus       224 e~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~  261 (504)
T KOG0624|consen  224 EGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP  261 (504)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence            99999999999999887         889999877553

>KOG1174|consensus

Probab=99.28  E-value=6.4e-10  Score=114.04  Aligned_cols=162  Identities=14%  Similarity=0.073  Sum_probs=143.0

Q ss_pred             HHHhcCCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy17691        108 FCYALSPDDGTTFS-YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA  186 (673)
Q Consensus       108 ~~~~l~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~  186 (673)
                      ...........-|+ .+..++..+++..|+.+-+++++.+|.+.+++...|.++...++.++|+-.|+.|..+.|...+.
T Consensus       291 ~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~  370 (564)
T KOG1174|consen  291 YLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI  370 (564)
T ss_pred             HHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence            33444434444454 44556678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        187 HSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG-NTLK-EMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       187 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg-~~~~-~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      |..|-.+|...|++.||....+.+++.-|+++.++..+| .++. .----++|...++++++++|++..+-..++.++..
T Consensus       371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~  450 (564)
T KOG1174|consen  371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV  450 (564)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999997 4443 33445899999999999999999999999999999


Q ss_pred             cCCCc
Q psy17691        265 SGKRG  269 (673)
Q Consensus       265 ~g~~~  269 (673)
                      .|+++
T Consensus       451 Eg~~~  455 (564)
T KOG1174|consen  451 EGPTK  455 (564)
T ss_pred             hCccc
Confidence            99987

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.26  E-value=3.2e-10  Score=132.06  Aligned_cols=198  Identities=14%  Similarity=0.094  Sum_probs=154.5

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhhcCCC
Q psy17691          8 TYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNH   87 (673)
Q Consensus         8 ~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~l~~~   87 (673)
                      ++--..-+.|+.+...+..+.+..+.|+.+.+...+..+                                         
T Consensus        22 ~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qa-----------------------------------------   60 (822)
T PRK14574         22 LFISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEE-----------------------------------------   60 (822)
T ss_pred             HHHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHH-----------------------------------------
Confidence            343445578999999999999999999654222222211                                         


Q ss_pred             cccccccccCCCCchhHHHHHHHhcCCCCh-hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy17691         88 PTSHLMQSVPGMHNKSRVEIFCYALSPDDG-TTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI  166 (673)
Q Consensus        88 ~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~  166 (673)
                                            +..+|++. ..+-.+..+...|+.++|+.++++++.-.|........+|.++..+|++
T Consensus        61 ----------------------L~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy  118 (822)
T PRK14574         61 ----------------------SKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW  118 (822)
T ss_pred             ----------------------HhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence                                  22344442 2233334445678999999999999944455555566668899999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       167 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  246 (673)
                      ++|++.|+++++.+|+++.++..++.++...++.++|++.++++.+.+|.+... ..++.++..+++..+|++.|+++++
T Consensus       119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999985554 6667777778888789999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        247 INPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       247 l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      .+|++.+++..+..++...|-..
T Consensus       198 ~~P~n~e~~~~~~~~l~~~~~~~  220 (822)
T PRK14574        198 LAPTSEEVLKNHLEILQRNRIVE  220 (822)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCcH
Confidence            99999999999999888888775

>KOG0495|consensus

Probab=99.26  E-value=2e-09  Score=115.95  Aligned_cols=265  Identities=15%  Similarity=0.146  Sum_probs=205.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHHh
Q psy17691          3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKYTR   67 (673)
Q Consensus         3 ~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~   67 (673)
                      ++-...+++|+..-|.....|.+.+..+...|+               |+..+.|+..-.......+++.|.. .+.++.
T Consensus       567 Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~-llakar  645 (913)
T KOG0495|consen  567 ESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARD-LLAKAR  645 (913)
T ss_pred             HHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHH-HHHHHh
Confidence            455678999999999999999999999998885               4444555555555555555555543 444454


Q ss_pred             hcCCCchhhhh--hhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q psy17691         68 ELAPGNRIRIG--YVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVL-LLIQVSEAEECYNTALR  144 (673)
Q Consensus        68 ~l~p~~~~~l~--~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~  144 (673)
                      ...+.....+-  .+...+++.+.            ...+-..++...|+....|..++..+ ++++.+.|...|...++
T Consensus       646 ~~sgTeRv~mKs~~~er~ld~~ee------------A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k  713 (913)
T KOG0495|consen  646 SISGTERVWMKSANLERYLDNVEE------------ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK  713 (913)
T ss_pred             ccCCcchhhHHHhHHHHHhhhHHH------------HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence            44444433322  22222222111            11222346777899999987777666 48999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q psy17691        145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF-------  217 (673)
Q Consensus       145 ~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------  217 (673)
                      ..|+....|..|+.+-...|+...|...++++.-.+|++...|...-..-++.|+.+.|.....+||+..|++       
T Consensus       714 ~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEa  793 (913)
T KOG0495|consen  714 KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEA  793 (913)
T ss_pred             cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987764       


Q ss_pred             -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-----
Q psy17691        218 -----------------------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG-----  269 (673)
Q Consensus       218 -----------------------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~-----  269 (673)
                                             +.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.-+     
T Consensus       794 I~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev  873 (913)
T KOG0495|consen  794 IWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV  873 (913)
T ss_pred             HHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence                                   3467778889999999999999999999999999999999888888888544     


Q ss_pred             ----cccCCCCHHHH
Q psy17691        270 ----FFIRTDLNSAY  280 (673)
Q Consensus       270 ----l~l~p~~~~a~  280 (673)
                          ....|.+.+.|
T Consensus       874 ~~~c~~~EP~hG~~W  888 (913)
T KOG0495|consen  874 LKKCETAEPTHGELW  888 (913)
T ss_pred             HHHHhccCCCCCcHH
Confidence                44556655433

>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional

Probab=99.26  E-value=7.5e-11  Score=128.89  Aligned_cols=150  Identities=11%  Similarity=0.032  Sum_probs=119.6

Q ss_pred             CcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        474 DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       474 ~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      +.+++++++++.  |..+..++++..+.++.|+.+++++|                                        
T Consensus       221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG----------------------------------------  260 (406)
T PRK15427        221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILG----------------------------------------  260 (406)
T ss_pred             CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEE----------------------------------------
Confidence            345666677665  88999999999998888999999988                                        


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-C------CCCcchhhhhhhcCCceeecCCCc
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-L------CNGHTTSMDVLWTGTPVVTLPGET  624 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p------~~g~~t~~eal~~GvPvvt~~g~~  624 (673)
                       .++.++.+++.++++|++ ++|.|.|..++++....|+.+|+++-|. .      ++-|++++|||++|+|||+-....
T Consensus       261 -~G~~~~~l~~~~~~~~l~-~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g  338 (406)
T PRK15427        261 -IGPWERRLRTLIEQYQLE-DVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG  338 (406)
T ss_pred             -CchhHHHHHHHHHHcCCC-CeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC
Confidence             455677899999999995 8999999999999999999999997654 3      566899999999999999864432


Q ss_pred             chhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcC-CHHHHHHHHhhh
Q psy17691        625 LASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT-DRDYCEKALLYH  671 (673)
Q Consensus       625 ~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~-d~~~~~~~~~~~  671 (673)
                      ...     ++ .-|-..++.  .|.+++.+...+|.+ |++.++++....
T Consensus       339 ~~E-----~v-~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~a  382 (406)
T PRK15427        339 IPE-----LV-EADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRA  382 (406)
T ss_pred             chh-----hh-cCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            211     11 124445554  489999999999999 999888877643

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.25  E-value=1.4e-10  Score=123.95  Aligned_cols=113  Identities=21%  Similarity=0.284  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ  232 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g  232 (673)
                      +...|..++..|+|++|+.+|+++++++|++..+++++|.++..+|++++|+..++++++++|+++.+++++|.+|..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            34556777777777777777777777777777777777887777788888888888888888877777888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        233 DIQGALQCYSRAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       233 ~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      ++++|+.+|+++++++|++..+...++.+...+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            888888888888888887777777777765544

>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.24  E-value=9.2e-11  Score=128.00  Aligned_cols=189  Identities=16%  Similarity=0.118  Sum_probs=126.6

Q ss_pred             eeccCccccccccccccCcccCcccccccccccCCCCCcEEEecCCc---ccccChhhHHHHHHHHhcccCeeEEeeccC
Q psy17691        437 VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ---LYKIDPSTLQMWVNVLKAVPNSILWLLKFP  513 (673)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~~~~~~  513 (673)
                      ++.||+.+..+.+.+...        ...+...+++.+..+++.++|   ..|..+.+++++.++.++.|+.+|+++|..
T Consensus       181 vI~ngvd~~~f~~~~~~~--------~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~  252 (396)
T cd03818         181 VIHDGIDTDRLRPDPQAR--------LRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGD  252 (396)
T ss_pred             EeCCCccccccCCCchhh--------hcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence            467887665443221110        112233345556666655554   468999999999999999999999998821


Q ss_pred             CcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHHHcCC--CCCeEEeccCcChHHHHHhccc
Q psy17691        514 AVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGL--DQHRILFSNVAAKEEHVRRGQL  591 (673)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~rv~~~~~~~~~~~~~~~~~  591 (673)
                      ..+   .     -.                        -+..+....++..++.+.  +.++|+|+|.++.++....|..
T Consensus       253 ~~~---~-----g~------------------------~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~  300 (396)
T cd03818         253 GVS---Y-----GA------------------------PPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQV  300 (396)
T ss_pred             Ccc---c-----CC------------------------CCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHh
Confidence            000   0     00                        000011112223344443  3589999999999999999999


Q ss_pred             ccEEec-CCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHH
Q psy17691        592 ADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKAL  668 (673)
Q Consensus       592 ~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~  668 (673)
                      +|+++- |+|++-|.+++|||++|+|||+-.......     ++.. |-..+++  .|.+++.+...++.+|++.+.+++
T Consensus       301 adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~e-----~i~~-~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~  374 (396)
T cd03818         301 SDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVRE-----VITD-GENGLLVDFFDPDALAAAVIELLDDPARRARLR  374 (396)
T ss_pred             CcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCchh-----hccc-CCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHH
Confidence            999965 568888999999999999999876543322     2222 4455554  489999999999999999998887


Q ss_pred             hhh
Q psy17691        669 LYH  671 (673)
Q Consensus       669 ~~~  671 (673)
                      ...
T Consensus       375 ~~a  377 (396)
T cd03818         375 RAA  377 (396)
T ss_pred             HHH
Confidence            654

ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.24  E-value=3.4e-09  Score=115.55  Aligned_cols=122  Identities=15%  Similarity=0.073  Sum_probs=99.7

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        144 RLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN  223 (673)
Q Consensus       144 ~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  223 (673)
                      +..|+++.+...++..+...|+.++|.+.++++++. +.+......++.+  ..++.+++++.+++.++.+|+++..+..
T Consensus       257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~  333 (398)
T PRK10747        257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWST  333 (398)
T ss_pred             HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHH
Confidence            344567778888899999999999999999999984 4455554444444  3488999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       224 lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +|.++...|++++|.++|+++++..|++.. +..|+.++...|+.+
T Consensus       334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~  378 (398)
T PRK10747        334 LGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPE  378 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHH
Confidence            999999999999999999999999988544 557889998888854

>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase

Probab=99.24  E-value=1.1e-10  Score=127.64  Aligned_cols=163  Identities=23%  Similarity=0.199  Sum_probs=127.4

Q ss_pred             ccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccC--eeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPN--SILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL  539 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (673)
                      ..|.++|++.+.++|++++++.  |..+.+++++.++++..|+  .+|+++|.+.                         
T Consensus       208 ~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~-------------------------  262 (405)
T TIGR03449       208 TERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPS-------------------------  262 (405)
T ss_pred             HHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCC-------------------------
Confidence            3567789988888888888775  8889999999999998887  7888877210                         


Q ss_pred             hccCchhhhhccCCh-hhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCce
Q psy17691        540 KAVPNSILWLLKFPA-VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPV  617 (673)
Q Consensus       540 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPv  617 (673)
                                  .++ ...+.+++..++.|+. ++|.|.|..+.++....|..+|+++- |..++.|++++|||++|+||
T Consensus       263 ------------~~g~~~~~~l~~~~~~~~l~-~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pv  329 (405)
T TIGR03449       263 ------------GSGLATPDALIELAAELGIA-DRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPV  329 (405)
T ss_pred             ------------CCcchHHHHHHHHHHHcCCC-ceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCE
Confidence                        012 3356788888999995 89999999999999999999999965 45778899999999999999


Q ss_pred             eecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        618 VTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       618 vt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      |+........     ++.. |-..+++  .|.+++.+...++.+|++.+++++..
T Consensus       330 i~~~~~~~~e-----~i~~-~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~  378 (405)
T TIGR03449       330 VAARVGGLPV-----AVAD-GETGLLVDGHDPADWADALARLLDDPRTRIRMGAA  378 (405)
T ss_pred             EEecCCCcHh-----hhcc-CCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            9976533221     2222 3344554  48999999999999999988887654

Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.

>KOG3060|consensus

Probab=99.23  E-value=1e-09  Score=106.33  Aligned_cols=161  Identities=19%  Similarity=0.164  Sum_probs=138.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA  203 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  203 (673)
                      ...+..|+.+-|..++++.-...|++..+....|..+...|++++|+++|+..++-+|.+...+-..-.+...+|+--+|
T Consensus        60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~a  139 (289)
T KOG3060|consen   60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEA  139 (289)
T ss_pred             HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHH
Confidence            45566889999999999988888999999888999999999999999999999999999988888888888888998899


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc------------cc
Q psy17691        204 LLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG------------FF  271 (673)
Q Consensus       204 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~------------l~  271 (673)
                      ++.+...++..+++.++|..++.+|...|+|++|.-||++.+-+.|.++-.+..||.++.-.|..+            ++
T Consensus       140 Ik~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  140 IKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999888887755            66


Q ss_pred             cCCCCHHHHHHHH
Q psy17691        272 IRTDLNSAYFWLL  284 (673)
Q Consensus       272 l~p~~~~a~~~l~  284 (673)
                      +.|.+..+++.+-
T Consensus       220 l~~~~~ral~GI~  232 (289)
T KOG3060|consen  220 LNPKNLRALFGIY  232 (289)
T ss_pred             hChHhHHHHHHHH
Confidence            7776555554443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.22  E-value=4.5e-10  Score=129.46  Aligned_cols=200  Identities=13%  Similarity=0.090  Sum_probs=152.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      ++++|+..++.+++.+|+...+|+.+|.++.+.++.+++... .++.......++                         
T Consensus        46 ~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~-------------------------   99 (906)
T PRK14720         46 LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKW-------------------------   99 (906)
T ss_pred             CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccch-------------------------
Confidence            367788888888888888888888888877777764443333 222222111111                         


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVL-LLIQVSEAEECYNTALRLCPTHADSLNNLA  157 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg  157 (673)
                                            ..++.+  ++...+++..++..++.++ ++|+.++|...|+++++.+|+++.+++++|
T Consensus       100 ----------------------~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~A  157 (906)
T PRK14720        100 ----------------------AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLA  157 (906)
T ss_pred             ----------------------hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHH
Confidence                                  122222  2333455555665555554 699999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------HHHHH----
Q psy17691        158 NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA--------YSNMG----  225 (673)
Q Consensus       158 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~--------~~~lg----  225 (673)
                      ..|... ++++|++++.+|++.              +...++|.++.+.+++.+..+|.+.+.        ...++    
T Consensus       158 Y~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~  222 (906)
T PRK14720        158 TSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL  222 (906)
T ss_pred             HHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh
Confidence            999999 999999999999887              666779999999999999999987654        22234    


Q ss_pred             --------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        226 --------NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK  263 (673)
Q Consensus       226 --------~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~  263 (673)
                              ..|...+++++++..++.+|+.+|++..+...++.+|.
T Consensus       223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence                    78889999999999999999999999999999999998

>KOG3060|consensus

Probab=99.22  E-value=9.6e-09  Score=99.71  Aligned_cols=150  Identities=21%  Similarity=0.186  Sum_probs=133.5

Q ss_pred             CCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy17691        114 PDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS  192 (673)
Q Consensus       114 p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  192 (673)
                      |........- ..+-..|++++|+++|+..++.+|.+..++...-.+...+|+--+|++.+.+.++..+.+.++|..++.
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae  162 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE  162 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            5555555433 344458999999999999999999999999888888899999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD---IQGALQCYSRAIQINPGFADAHSNLASIHK  263 (673)
Q Consensus       193 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~eA~~~~~~Al~l~p~~~~a~~~La~~~~  263 (673)
                      +|...|+|++|.-+|++.+-++|.++-.+..+|.+++-+|.   ++-|.++|.++++++|.+..+++.+-.+..
T Consensus       163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~  236 (289)
T KOG3060|consen  163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS  236 (289)
T ss_pred             HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988775   567999999999999988888887765543

>KOG0550|consensus

Probab=99.22  E-value=4.4e-11  Score=122.72  Aligned_cols=233  Identities=18%  Similarity=0.162  Sum_probs=176.3

Q ss_pred             CCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCch---hhhhhhhhhcCCCcccccccccCC-CCchhHHHHHHHh
Q psy17691         36 PNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPG-MHNKSRVEIFCYA  111 (673)
Q Consensus        36 ~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~-~~~~~a~~~~~~~  111 (673)
                      |+.+..|.+.+..++..+++++|.-. .+....++++..   ...+.+...++....+........ .....++......
T Consensus        80 pd~a~yy~nRAa~~m~~~~~~~a~~d-ar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~  158 (486)
T KOG0550|consen   80 PDNASYYSNRAATLMMLGRFEEALGD-ARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKL  158 (486)
T ss_pred             ccchhhhchhHHHHHHHHhHhhcccc-hhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcc
Confidence            78899999999999999999998753 344455555442   233344433333222221111000 0001111111111


Q ss_pred             c--CCCChhHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-
Q psy17691        112 L--SPDDGTTF----SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA-  184 (673)
Q Consensus       112 l--~p~~~~~~----~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~-  184 (673)
                      .  +.+.+.++    ....++...|++++|...--..+++++.+.++++..|.+++...+.+.|+..|++++.++|++. 
T Consensus       159 ~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~  238 (486)
T KOG0550|consen  159 APSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQK  238 (486)
T ss_pred             cccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhh
Confidence            1  11112222    2334566799999999999999999999999999999999999999999999999999999874 


Q ss_pred             -----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        185 -----------AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF----ADAYSNMGNTLKEMQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       185 -----------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p  249 (673)
                                 ..+-.-|+-.++.|+|.+|.++|..+|.++|++    +.+|.|+|.+..++|+..+|+...+.|+++++
T Consensus       239 sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~  318 (486)
T KOG0550|consen  239 SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS  318 (486)
T ss_pred             HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence                       456677888999999999999999999999986    56799999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCc
Q psy17691        250 GFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       250 ~~~~a~~~La~~~~~~g~~~  269 (673)
                      ....++...|.||..+++++
T Consensus       319 syikall~ra~c~l~le~~e  338 (486)
T KOG0550|consen  319 SYIKALLRRANCHLALEKWE  338 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.21  E-value=3e-10  Score=121.49  Aligned_cols=112  Identities=16%  Similarity=0.114  Sum_probs=105.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK  199 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  199 (673)
                      ...+..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++..+++++|.++..+|+
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            44566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        200 LTDALLHYKEAIRIQPSFADAYSNMGNTLKEM  231 (673)
Q Consensus       200 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~  231 (673)
                      +++|+..|+++++++|++..+...++.|..++
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999988886665

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.20  E-value=4.9e-10  Score=102.80  Aligned_cols=99  Identities=16%  Similarity=0.095  Sum_probs=93.7

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17691        117 GTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ  196 (673)
Q Consensus       117 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  196 (673)
                      ...|.++..++..|++++|+..|+-+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..++++|.+++.
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            34566777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCC
Q psy17691        197 QGKLTDALLHYKEAIRIQP  215 (673)
Q Consensus       197 ~g~~~eA~~~~~~al~~~p  215 (673)
                      .|+.+.|.+.|+.++...-
T Consensus       116 lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        116 CDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             cCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999863

>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.19  E-value=2.5e-10  Score=121.62  Aligned_cols=160  Identities=18%  Similarity=0.129  Sum_probs=124.3

Q ss_pred             ccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccC
Q psy17691        466 RQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVP  543 (673)
Q Consensus       466 r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (673)
                      |+.++.+.+.++|++++++  .|..+.+++++.++.++.|+.+++++|..                              
T Consensus       194 ~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~------------------------------  243 (375)
T cd03821         194 RRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPD------------------------------  243 (375)
T ss_pred             hhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCC------------------------------
Confidence            5667788888888888865  48889999999999999999999998810                              


Q ss_pred             chhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCC
Q psy17691        544 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                               ++.....+.......|+. ++|.|.|.++.++....|..+|+++-|. .++-|++.+|||++|+|||+-..
T Consensus       244 ---------~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~  313 (375)
T cd03821         244 ---------EGGYRAELKQIAAALGLE-DRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK  313 (375)
T ss_pred             ---------CcchHHHHHHHHHhcCcc-ceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC
Confidence                     112233444445788884 8999999999999999999999996654 67889999999999999999776


Q ss_pred             CcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        623 ETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       623 ~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      .....     ++.. +..-++..+.+++++...++.+|++.+++++...
T Consensus       314 ~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~  356 (375)
T cd03821         314 VPWQE-----LIEY-GCGWVVDDDVDALAAALRRALELPQRLKAMGENG  356 (375)
T ss_pred             CCHHH-----Hhhc-CceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            54433     2333 3333555667999999999999998888877643

Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.17  E-value=1.6e-09  Score=108.17  Aligned_cols=197  Identities=17%  Similarity=0.123  Sum_probs=159.6

Q ss_pred             CCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcC
Q psy17691         34 GQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALS  113 (673)
Q Consensus        34 g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~  113 (673)
                      ++++..++.+.+|..+...|+.+.|+..  ...+...|+..                          .           +
T Consensus        64 ~d~~t~e~~ltLGnLfRsRGEvDRAIRi--HQ~L~~spdlT--------------------------~-----------~  104 (389)
T COG2956          64 EDPETFEAHLTLGNLFRSRGEVDRAIRI--HQTLLESPDLT--------------------------F-----------E  104 (389)
T ss_pred             cCchhhHHHHHHHHHHHhcchHHHHHHH--HHHHhcCCCCc--------------------------h-----------H
Confidence            4566777888888888888888877641  11111111110                          0           0


Q ss_pred             CCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHH
Q psy17691        114 PDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-----AAAHS  188 (673)
Q Consensus       114 p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~  188 (673)
                      ...-..+.++..++..|-++.|+..|....+...--..+...|-.+|....+|++|++..++..++.+..     +..+.
T Consensus       105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC  184 (389)
T COG2956         105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC  184 (389)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence            0001122445677889999999999999988665667899999999999999999999999999998876     56788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF-ADAHSNLASIHKDSGK  267 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~-~~a~~~La~~~~~~g~  267 (673)
                      .|+..+....+.++|+..++++++-+|+...+-..+|.++...|+|++|++.++.+++.+|+. +.+.-.|..||..+|+
T Consensus       185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~  264 (389)
T COG2956         185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK  264 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999999999999987 4677889999999999


Q ss_pred             Cc
Q psy17691        268 RG  269 (673)
Q Consensus       268 ~~  269 (673)
                      .+
T Consensus       265 ~~  266 (389)
T COG2956         265 PA  266 (389)
T ss_pred             HH
Confidence            75

>KOG2076|consensus

Probab=99.16  E-value=1.3e-09  Score=121.68  Aligned_cols=131  Identities=21%  Similarity=0.302  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691        119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG  198 (673)
Q Consensus       119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  198 (673)
                      .+..+..++..|++++|+..+.++++.+|.++.+|+.||.+|.++|+.+++....-.|--++|++.+.|..++....++|
T Consensus       142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~  221 (895)
T KOG2076|consen  142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG  221 (895)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence            34555667778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       199 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p  249 (673)
                      ++++|.-+|.+|++.+|.+.......+.+|.++|++..|...|.+++++.|
T Consensus       222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999999999999999

>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.15  E-value=4.4e-10  Score=122.14  Aligned_cols=165  Identities=13%  Similarity=0.114  Sum_probs=123.3

Q ss_pred             cccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcc---cCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691        467 QQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAV---PNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA  541 (673)
Q Consensus       467 ~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~---p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (673)
                      +..+.+.+.++|++++++  .|..+..++++.++.+..   |+.+|+++|..   ....                     
T Consensus       203 ~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~---~~~~---------------------  258 (392)
T cd03805         203 GLLIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGY---DPRV---------------------  258 (392)
T ss_pred             cccccCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCC---CCCC---------------------
Confidence            344566778888888876  588999999999998887   89999998821   0000                     


Q ss_pred             cCchhhhhccCChhhhhhHHHHHHH-cCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceee
Q psy17691        542 VPNSILWLLKFPAVGEANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVT  619 (673)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt  619 (673)
                       +        .+..-.+.+++.+.+ .|+. ++|.|.|..+.++....|..+|+++- |..++-|++.+|||++|+|||+
T Consensus       259 -~--------~~~~~~~~l~~~~~~~~~l~-~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~  328 (392)
T cd03805         259 -A--------ENVEYLEELQRLAEELLLLE-DQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIA  328 (392)
T ss_pred             -c--------hhHHHHHHHHHHHHHhcCCC-ceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEE
Confidence             0        001123567888888 8995 99999999999999999999999975 4566779999999999999998


Q ss_pred             cCCCcchhhhHHHHHHhcCCCc-cccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        620 LPGETLASRVAASQLATLGCPE-LIARTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       620 ~~g~~~~~r~~~~~l~~~gl~~-~ia~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ........     ++.. |-.. ++..|.+++.+....+..|++.+.+++...
T Consensus       329 s~~~~~~e-----~i~~-~~~g~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~a  375 (392)
T cd03805         329 CNSGGPLE-----TVVD-GETGFLCEPTPEEFAEAMLKLANDPDLADRMGAAG  375 (392)
T ss_pred             ECCCCcHH-----Hhcc-CCceEEeCCCHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            76543332     2222 2233 344689999999999999999888887643

ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.12  E-value=6.1e-09  Score=111.76  Aligned_cols=207  Identities=16%  Similarity=0.067  Sum_probs=143.5

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhhcCCCccccccc
Q psy17691         15 LQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQ   94 (673)
Q Consensus        15 l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~l~~~~~a~~~~   94 (673)
                      .||+++.+|..+|.++...|+++.+..-+.......... .+....             ....+......++        
T Consensus         1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~-------------~~~~a~~~~~~g~--------   58 (355)
T cd05804           1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR-ATERER-------------AHVEALSAWIAGD--------   58 (355)
T ss_pred             CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC-CCHHHH-------------HHHHHHHHHHcCC--------
Confidence            389999999999999999998666433322222211111 000000             0001111111121        


Q ss_pred             ccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17691         95 SVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVLL----LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEE  168 (673)
Q Consensus        95 ~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~e  168 (673)
                            ...+...+  .+...|++...+.....+..    .+..+.+...++.....+|....++..+|.++..+|++++
T Consensus        59 ------~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~  132 (355)
T cd05804          59 ------LPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR  132 (355)
T ss_pred             ------HHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence                  12222222  34457777765543222222    3455555555555445677788888899999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA----DAYSNMGNTLKEMQDIQGALQCYSRA  244 (673)
Q Consensus       169 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~A  244 (673)
                      |+..++++++++|++..++..+|.++...|++++|+.+++++++..|.++    ..+..+|.++..+|++++|+..|+++
T Consensus       133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987543    34668999999999999999999999


Q ss_pred             HHhCC
Q psy17691        245 IQINP  249 (673)
Q Consensus       245 l~l~p  249 (673)
                      +...|
T Consensus       213 ~~~~~  217 (355)
T cd05804         213 IAPSA  217 (355)
T ss_pred             hcccc
Confidence            87666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.11  E-value=4e-10  Score=120.18  Aligned_cols=158  Identities=20%  Similarity=0.284  Sum_probs=123.3

Q ss_pred             ccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccC
Q psy17691        466 RQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVP  543 (673)
Q Consensus       466 r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (673)
                      |+.++++.+.+++++++++  .|..+.++++|.++.+..|+.+++++|                                
T Consensus       193 ~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G--------------------------------  240 (374)
T cd03817         193 RRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVG--------------------------------  240 (374)
T ss_pred             HHhcCCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEe--------------------------------
Confidence            4556777777777777765  478889999999999888999999987                                


Q ss_pred             chhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCC
Q psy17691        544 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                               .+...+.+++...+.++. ++|.|.|.++.++....|+.+|+++.|. ..+.|++++|||++|+|||+...
T Consensus       241 ---------~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~  310 (374)
T cd03817         241 ---------DGPEREELEELARELGLA-DRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDA  310 (374)
T ss_pred             ---------CCchHHHHHHHHHHcCCC-CcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCC
Confidence                     233455677777888884 8999999999999999999999998875 56789999999999999999776


Q ss_pred             CcchhhhHHHHHHhcCCCccccCCH-HHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        623 ETLASRVAASQLATLGCPELIARTH-KEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       623 ~~~~~r~~~~~l~~~gl~~~ia~~~-~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ..+..     ++.. |-.+++..+. +++++...++.+|++.+++++...
T Consensus       311 ~~~~~-----~i~~-~~~g~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~  354 (374)
T cd03817         311 PGLPD-----LVAD-GENGFLFPPGDEALAEALLRLLQDPELRRRLSKNA  354 (374)
T ss_pred             CChhh-----heec-CceeEEeCCCCHHHHHHHHHHHhChHHHHHHHHHH
Confidence            54432     2222 2334444433 399999999999999888877654

UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.11  E-value=2.3e-09  Score=102.23  Aligned_cols=135  Identities=20%  Similarity=0.188  Sum_probs=102.4

Q ss_pred             CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHH
Q psy17691        131 QVSEAEECYNTALRLCPTH--ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALL  205 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~--~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~  205 (673)
                      .+..+...+.+.++.++..  ..+++.+|.++..+|++++|+..|++++.+.|+.   ..++.++|.++...|++++|++
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~   93 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE   93 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            3555555565555555544  6677899999999999999999999999887663   4589999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        206 HYKEAIRIQPSFADAYSNMGNTLK-------EMQDIQ-------GALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       206 ~~~~al~~~p~~~~~~~~lg~~~~-------~~g~~~-------eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      .|+++++++|.....+.++|.++.       .+|+++       +|+.+|++++..+|.+..   ..+..+...|++
T Consensus        94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~---~~~~~~~~~~~~  167 (168)
T CHL00033         94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI---EAQNWLKITGRF  167 (168)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH---HHHHHHHHhcCC
Confidence            999999999999998989998888       777766       556666677777876542   223334444544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.11  E-value=4.2e-09  Score=111.10  Aligned_cols=133  Identities=20%  Similarity=0.159  Sum_probs=70.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL  204 (673)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  204 (673)
                      ..+..|++++|+..++..++..|+++..+...+.++.+.|+.++|.+.+++++.++|+.+..+.++|..|.+.|++.+|+
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai  394 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI  394 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       205 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      ..+++.+..+|+++..|..||..|..+|+..+|...+.+.+.+......+...
T Consensus       395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~  447 (484)
T COG4783         395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIF  447 (484)
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHH
Confidence            55555555555555555555555555555555555555555444444444333

>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.11  E-value=4.1e-10  Score=120.43  Aligned_cols=155  Identities=19%  Similarity=0.229  Sum_probs=122.0

Q ss_pred             ccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccC
Q psy17691        466 RQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVP  543 (673)
Q Consensus       466 r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (673)
                      +...+.+.+.+++++++++  .|..+.+++++..+.+..|+.+++++|                                
T Consensus       183 ~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG--------------------------------  230 (358)
T cd03812         183 RRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVG--------------------------------  230 (358)
T ss_pred             HHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEe--------------------------------
Confidence            4456777788888888876  588999999999999999999999998                                


Q ss_pred             chhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCC
Q psy17691        544 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                               +++..+.+++.+.+.|+. ++|.|.|.  .++....|+.+|+++-|. .++.|++.+|||++|+|||+-..
T Consensus       231 ---------~g~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~  298 (358)
T cd03812         231 ---------DGELEEEIKKKVKELGLE-DKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDT  298 (358)
T ss_pred             ---------CCchHHHHHHHHHhcCCC-CcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcC
Confidence                     344556788888888984 89999998  456677888999997754 56789999999999999998765


Q ss_pred             CcchhhhHHHHHHhcCCCcccc-CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        623 ETLASRVAASQLATLGCPELIA-RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       623 ~~~~~r~~~~~l~~~gl~~~ia-~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      .....     ++.. +..-++. .+.+++.+...++.+|++.+..++..
T Consensus       299 ~~~~~-----~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~  341 (358)
T cd03812         299 ITKEV-----DLTD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESI  341 (358)
T ss_pred             Cchhh-----hhcc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhh
Confidence            44322     3333 3333444 35699999999999999999877653

capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.10  E-value=2.2e-09  Score=95.39  Aligned_cols=107  Identities=23%  Similarity=0.322  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF---ADAYSN  223 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~  223 (673)
                      +++++.+|..+..+|++++|++.|+++++.+|++   ..+++.+|.++...|++++|+..|++++...|++   ..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4567888999999999999999999999888876   5688889999999999999999999999888775   578889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHS  256 (673)
Q Consensus       224 lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~  256 (673)
                      +|.++.++|++++|+.+++++++..|++..+..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            999999999999999999999999888776543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.10  E-value=9.1e-10  Score=118.54  Aligned_cols=156  Identities=17%  Similarity=0.208  Sum_probs=119.8

Q ss_pred             cccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691        465 SRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV  542 (673)
Q Consensus       465 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (673)
                      .|++++++++..++++++++  .|..+.++++|.++.++ ++.+|+++|                               
T Consensus       187 ~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G-------------------------------  234 (371)
T cd04962         187 LKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARLLLVG-------------------------------  234 (371)
T ss_pred             HHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceEEEEc-------------------------------
Confidence            45678888888888888865  48899999999998766 567888887                               


Q ss_pred             CchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecC
Q psy17691        543 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLP  621 (673)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~  621 (673)
                                .+...+.+++.+.+.|+. ++|.|.|..+  +....|..+|+++-|. .++.|++++|||++|+|||+-.
T Consensus       235 ----------~g~~~~~~~~~~~~~~~~-~~v~~~g~~~--~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~  301 (371)
T cd04962         235 ----------DGPERSPAERLARELGLQ-DDVLFLGKQD--HVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASN  301 (371)
T ss_pred             ----------CCcCHHHHHHHHHHcCCC-ceEEEecCcc--cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeC
Confidence                      334456788888889985 8999999653  5667788999997765 6677999999999999999865


Q ss_pred             CCcchhhhHHHHHHhcCCCccccC--CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        622 GETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       622 g~~~~~r~~~~~l~~~gl~~~ia~--~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ......     ++.. |-..+++.  |.+++++...++.+|++.+.+++...
T Consensus       302 ~~~~~e-----~i~~-~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~  347 (371)
T cd04962         302 AGGIPE-----VVKH-GETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAA  347 (371)
T ss_pred             CCCchh-----hhcC-CCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            543322     2222 33444443  78999999999999999988877653

Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog

>KOG1156|consensus

Probab=99.10  E-value=5.1e-09  Score=113.21  Aligned_cols=199  Identities=16%  Similarity=0.155  Sum_probs=156.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      +|.+.++..++.|+..|++++.+...|..+..+|+.+.+..+..+|..                                
T Consensus        22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--------------------------------   69 (700)
T KOG1156|consen   22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--------------------------------   69 (700)
T ss_pred             HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--------------------------------
Confidence            466777888888889999999999999999999965555544444422                                


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANI  159 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~  159 (673)
                                                     .++....+|...+.+++ ..+|++|+.+|+.|+.+.|++..++..++.+
T Consensus        70 -------------------------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL  118 (700)
T KOG1156|consen   70 -------------------------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL  118 (700)
T ss_pred             -------------------------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                                           34556677877777766 6799999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH-----H------------
Q psy17691        160 KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ---PSFA-----D------------  219 (673)
Q Consensus       160 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---p~~~-----~------------  219 (673)
                      ..++++++-....-.+.++..|.....|..++..+.-.|++..|....+...+..   |..-     +            
T Consensus       119 Q~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~  198 (700)
T KOG1156|consen  119 QIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA  198 (700)
T ss_pred             HHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999988877666554   2211     1            


Q ss_pred             ----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        220 ----------------------AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       220 ----------------------~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~  262 (673)
                                            .....|.++.+++++++|...|...+..+|++.+.+..+-.++
T Consensus       199 g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l  263 (700)
T KOG1156|consen  199 GSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL  263 (700)
T ss_pred             ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence                                  2223456667777777777777777777777777666665555

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.10  E-value=1.9e-09  Score=103.24  Aligned_cols=117  Identities=19%  Similarity=0.236  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  225 (673)
                      ...+++.+|..+...|++++|+.+|+++++..|+.   ..++.++|.++...|++++|+.+|+++++..|++...+..+|
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            34455666666666666666666666666554432   345666666666666666666666666666666666666666


Q ss_pred             HHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        226 NTLKEMQD--------------IQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       226 ~~~~~~g~--------------~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      .++..+|+              +++|+++++++++.+|++   +...+..+...|+.
T Consensus       114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~  167 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS  167 (172)
T ss_pred             HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence            66665555              678888999999888886   44455555555543

>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds

Probab=99.09  E-value=1.5e-09  Score=116.67  Aligned_cols=140  Identities=19%  Similarity=0.158  Sum_probs=111.4

Q ss_pred             cccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHH
Q psy17691        483 QLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQA  562 (673)
Q Consensus       483 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (673)
                      ...|..+.+++++.++.++.|+.+|+++|                                         .+...+.+++
T Consensus       198 ~~~K~~~~li~a~~~l~~~~~~~~l~ivG-----------------------------------------~g~~~~~~~~  236 (367)
T cd05844         198 VEKKGPLLLLEAFARLARRVPEVRLVIIG-----------------------------------------DGPLLAALEA  236 (367)
T ss_pred             ccccChHHHHHHHHHHHHhCCCeEEEEEe-----------------------------------------CchHHHHHHH
Confidence            45689999999999999999999999988                                         3444567888


Q ss_pred             HHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC-------CCCcchhhhhhhcCCceeecCCCcchhhhHHHHHH
Q psy17691        563 TAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-------CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA  635 (673)
Q Consensus       563 ~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p-------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~  635 (673)
                      .+.+.|+. ++|.|.|.++.++....|..+|+++-|.-       ++.|++.+|||++|+|||+-.......     ++.
T Consensus       237 ~~~~~~~~-~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e-----~i~  310 (367)
T cd05844         237 LARALGLG-GRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPE-----AVE  310 (367)
T ss_pred             HHHHcCCC-CeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchh-----hee
Confidence            88899984 89999999999999999999999977642       466999999999999999866543322     222


Q ss_pred             hcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        636 TLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       636 ~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      . |-..++.  .|.+++++...++.+|++.+.+++..
T Consensus       311 ~-~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~  346 (367)
T cd05844         311 D-GETGLLVPEGDVAALAAALGRLLADPDLRARMGAA  346 (367)
T ss_pred             c-CCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            2 2223443  48899999999999999988877653

The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center

>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=99.09  E-value=3.6e-10  Score=107.96  Aligned_cols=160  Identities=14%  Similarity=0.138  Sum_probs=125.1

Q ss_pred             cccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhc-ccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691        465 SRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKA-VPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA  541 (673)
Q Consensus       465 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (673)
                      .|...+.+.+.+++++++++.  |....+++++..+..+ .|+..++++|                              
T Consensus         5 ~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G------------------------------   54 (172)
T PF00534_consen    5 LREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVG------------------------------   54 (172)
T ss_dssp             HHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEES------------------------------
T ss_pred             HHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEc------------------------------
Confidence            456677888888888888654  8888999999998875 8999999987                              


Q ss_pred             cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeec
Q psy17691        542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTL  620 (673)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~  620 (673)
                                 .+.....+.......++ .+++.|.+..+.++....|+.+||++-|. ..+.|++.+|||++|+|||+-
T Consensus        55 -----------~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~  122 (172)
T PF00534_consen   55 -----------DGEYKKELKNLIEKLNL-KENIIFLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIAS  122 (172)
T ss_dssp             -----------HCCHHHHHHHHHHHTTC-GTTEEEEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEE
T ss_pred             -----------ccccccccccccccccc-cccccccccccccccccccccceeccccccccccccccccccccccceeec
Confidence                       23345567888888898 48999999999899999999999998876 568899999999999999997


Q ss_pred             CCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhhc
Q psy17691        621 PGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYHE  672 (673)
Q Consensus       621 ~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~~  672 (673)
                      ....+..     ++.. +.+.++.  .+.++.++...++..|++.++.|+++..
T Consensus       123 ~~~~~~e-----~~~~-~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~  170 (172)
T PF00534_consen  123 DIGGNNE-----IIND-GVNGFLFDPNDIEELADAIEKLLNDPELRQKLGKNAR  170 (172)
T ss_dssp             SSTHHHH-----HSGT-TTSEEEESTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCce-----eecc-ccceEEeCCCCHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence            7544433     2222 3344554  3679999999999999999999998764

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....

>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated

Probab=99.08  E-value=1.2e-09  Score=118.18  Aligned_cols=152  Identities=12%  Similarity=0.118  Sum_probs=116.2

Q ss_pred             cCCCCCcEEEecCCccc--ccChhhHHHHHHHHhccc----CeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691        469 YGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVP----NSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV  542 (673)
Q Consensus       469 ~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (673)
                      ...+++.+++++++++.  |..+..++++.+++++.|    +.+|+++|                               
T Consensus       188 ~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G-------------------------------  236 (374)
T TIGR03088       188 DFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVG-------------------------------  236 (374)
T ss_pred             hcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEec-------------------------------
Confidence            34466777888888665  888899999999998876    67898887                               


Q ss_pred             CchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceeecC
Q psy17691        543 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLP  621 (673)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~  621 (673)
                                .+...+.+++.+++.|+. +++.|.|.  .++....|..+|+++- |..++.|++.+|||+||+|||+-.
T Consensus       237 ----------~g~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~  303 (374)
T TIGR03088       237 ----------DGPARGACEQMVRAAGLA-HLVWLPGE--RDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATA  303 (374)
T ss_pred             ----------CCchHHHHHHHHHHcCCc-ceEEEcCC--cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcC
Confidence                      344556788889999994 88999985  4678888899999976 456788999999999999999854


Q ss_pred             CCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        622 GETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       622 g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      -.....     ++. -|...++.  .|.+++++....+.+|++.+..++..
T Consensus       304 ~~g~~e-----~i~-~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~  348 (374)
T TIGR03088       304 VGGNPE-----LVQ-HGVTGALVPPGDAVALARALQPYVSDPAARRAHGAA  348 (374)
T ss_pred             CCCcHH-----Hhc-CCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            322221     222 23444443  58999999999999999988777543

Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.

>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.07  E-value=1.2e-09  Score=119.35  Aligned_cols=144  Identities=12%  Similarity=-0.019  Sum_probs=113.4

Q ss_pred             CCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhc
Q psy17691        473 EDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLL  550 (673)
Q Consensus       473 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (673)
                      ++.+++++++++  .|..+.+++++..+.+..|+.+|+++|                                       
T Consensus       191 ~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G---------------------------------------  231 (398)
T cd03796         191 NDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGG---------------------------------------  231 (398)
T ss_pred             CCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEe---------------------------------------
Confidence            456778888876  588889999999998899999999988                                       


Q ss_pred             cCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeecCCCcchhhh
Q psy17691        551 KFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTLPGETLASRV  629 (673)
Q Consensus       551 ~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~  629 (673)
                        .++..+.+++.+++.|++ ++|.|.|..+.++....|..+|+++-| ..++-|.+++|||++|+|||+-.......  
T Consensus       232 --~g~~~~~l~~~~~~~~l~-~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e--  306 (398)
T cd03796         232 --DGPKRILLEEMREKYNLQ-DRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPE--  306 (398)
T ss_pred             --CCchHHHHHHHHHHhCCC-CeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCchh--
Confidence              344556788889999995 899999999999999999999999654 56677999999999999999865443332  


Q ss_pred             HHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHH
Q psy17691        630 AASQLATLGCPELIARTHKEYQDIAIRLGTDRDYC  664 (673)
Q Consensus       630 ~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~  664 (673)
                         ++.. |-.-++..|.+++++...++.++....
T Consensus       307 ---~i~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~  337 (398)
T cd03796         307 ---VLPP-DMILLAEPDVESIVRKLEEAISILRTG  337 (398)
T ss_pred             ---heeC-CceeecCCCHHHHHHHHHHHHhChhhh
Confidence               2222 212244558899999999888876544

Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.06  E-value=2e-09  Score=89.79  Aligned_cols=99  Identities=35%  Similarity=0.539  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        152 SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM  231 (673)
Q Consensus       152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~  231 (673)
                      +++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|++.++++++..|.+...+..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            56788888899999999999999999999888888899999999999999999999999999888888899999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCC
Q psy17691        232 QDIQGALQCYSRAIQINPG  250 (673)
Q Consensus       232 g~~~eA~~~~~~Al~l~p~  250 (673)
                      |++++|..+++++++..|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999998887763

>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional

Probab=99.06  E-value=1.8e-09  Score=117.16  Aligned_cols=163  Identities=16%  Similarity=0.113  Sum_probs=115.0

Q ss_pred             cccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691        465 SRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV  542 (673)
Q Consensus       465 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (673)
                      .|+.+|++.+..++++++++  .|-.+.++++|.++.++.|+.+|+++|.....+.+                       
T Consensus       183 ~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~-----------------------  239 (380)
T PRK15484        183 LRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKG-----------------------  239 (380)
T ss_pred             HHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCcccccc-----------------------
Confidence            46778888777777777765  48889999999999999999999998821000000                       


Q ss_pred             CchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC--CCCCcchhhhhhhcCCceeec
Q psy17691        543 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP--LCNGHTTSMDVLWTGTPVVTL  620 (673)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~--p~~g~~t~~eal~~GvPvvt~  620 (673)
                               -...-.+.+++.....|   ++|+|.|..+.++....|+.+|+++-|.  .++-|++.+|||++|+|||+-
T Consensus       240 ---------~~~~~~~~l~~~~~~l~---~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s  307 (380)
T PRK15484        240 ---------EKAAYQKKVLEAAKRIG---DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLAS  307 (380)
T ss_pred             ---------chhHHHHHHHHHHHhcC---CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEe
Confidence                     00111234444444544   5799999999999999999999997654  456689999999999999997


Q ss_pred             CCCcchhhhHHHHHHhcCCCcc-c--cCCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691        621 PGETLASRVAASQLATLGCPEL-I--ARTHKEYQDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       621 ~g~~~~~r~~~~~l~~~gl~~~-i--a~~~~~yv~~a~~la~d~~~~~~~~~  669 (673)
                      ....+..     ++.. |...+ +  ..|.+++.+...++.+|++. .++..
T Consensus       308 ~~gg~~E-----iv~~-~~~G~~l~~~~d~~~la~~I~~ll~d~~~-~~~~~  352 (380)
T PRK15484        308 TKGGITE-----FVLE-GITGYHLAEPMTSDSIISDINRTLADPEL-TQIAE  352 (380)
T ss_pred             CCCCcHh-----hccc-CCceEEEeCCCCHHHHHHHHHHHHcCHHH-HHHHH
Confidence            5433222     2222 33444 3  35899999999999999975 44443

>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose

Probab=99.06  E-value=1.6e-09  Score=117.24  Aligned_cols=163  Identities=17%  Similarity=0.110  Sum_probs=121.3

Q ss_pred             ccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA  541 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (673)
                      ..|+++|++.+..++++++|+.  |..+..++++..+.+..|+.+|+++|..   .                        
T Consensus       179 ~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g---~------------------------  231 (372)
T cd03792         179 YILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSG---A------------------------  231 (372)
T ss_pred             HHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCC---C------------------------
Confidence            4567799999998889888775  8899999999999988899999998821   0                        


Q ss_pred             cCchhhhhccCChhh-hhhHHHHHHHcCCCCCeEEeccCc--ChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCce
Q psy17691        542 VPNSILWLLKFPAVG-EANIQATAQALGLDQHRILFSNVA--AKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPV  617 (673)
Q Consensus       542 ~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~rv~~~~~~--~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPv  617 (673)
                                ..... .+.+++..+..|+. ++|.|.|..  +.++....|+.+|+++-| ..++-|.+++|||++|+||
T Consensus       232 ----------~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pv  300 (372)
T cd03792         232 ----------TDDPEGWIVYEEVLEYAEGD-PDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPV  300 (372)
T ss_pred             ----------CCCchhHHHHHHHHHHhCCC-CCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCE
Confidence                      00111 12233333356774 789998865  778888999999999765 4667799999999999999


Q ss_pred             eecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        618 VTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       618 vt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      |+-.......     ++ .-|...+++.+.++..+...++.+|++.+++++..
T Consensus       301 v~s~~~~~~~-----~i-~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~  347 (372)
T cd03792         301 IAGPVGGIPL-----QI-EDGETGFLVDTVEEAAVRILYLLRDPELRRKMGAN  347 (372)
T ss_pred             EEcCCCCchh-----hc-ccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHH
Confidence            9865433321     22 22555677788888888888899999998887654

The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.

>PRK10307 putative glycosyl transferase; Provisional

Probab=99.05  E-value=2.4e-09  Score=117.47  Aligned_cols=158  Identities=15%  Similarity=0.132  Sum_probs=120.7

Q ss_pred             ccccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA  541 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (673)
                      ..|+.+|++.+.+++++++++  .|..+..++++.++ +..|+.+|+++|                              
T Consensus       218 ~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG------------------------------  266 (412)
T PRK10307        218 ALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICG------------------------------  266 (412)
T ss_pred             HHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEEC------------------------------
Confidence            356788999988888888876  58788899998766 556899999988                              


Q ss_pred             cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCC-CC----cchhhhhhhcCCc
Q psy17691        542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NG----HTTSMDVLWTGTP  616 (673)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~-~g----~~t~~eal~~GvP  616 (673)
                                 +++.++.+++.++++|++  +|.|+|..+.++....|+.+||++-|.-. ++    ++...|+|++|+|
T Consensus       267 -----------~g~~~~~l~~~~~~~~l~--~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~P  333 (412)
T PRK10307        267 -----------QGGGKARLEKMAQCRGLP--NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRN  333 (412)
T ss_pred             -----------CChhHHHHHHHHHHcCCC--ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCC
Confidence                       455567788888999984  69999999999999999999999766533 32    3457899999999


Q ss_pred             eeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        617 VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       617 vvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ||+-.....  .+ ..+..  + ..++.  .|.+++.+...+|..|++.+++++...
T Consensus       334 Vi~s~~~g~--~~-~~~i~--~-~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a  384 (412)
T PRK10307        334 VVATAEPGT--EL-GQLVE--G-IGVCVEPESVEALVAAIAALARQALLRPKLGTVA  384 (412)
T ss_pred             EEEEeCCCc--hH-HHHHh--C-CcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            998643211  00 11333  3 33433  589999999999999999998887653

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.03  E-value=1.6e-09  Score=118.88  Aligned_cols=110  Identities=17%  Similarity=0.140  Sum_probs=91.6

Q ss_pred             cCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchh
Q psy17691        469 YGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSI  546 (673)
Q Consensus       469 ~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (673)
                      .+++.+.+++++++++  .|.....+++++++++..|+.+|+++|                                   
T Consensus       392 ~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVG-----------------------------------  436 (578)
T PRK15490        392 QKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVG-----------------------------------  436 (578)
T ss_pred             hccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEe-----------------------------------
Confidence            4556677788888875  488999999999999999999999998                                   


Q ss_pred             hhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCC
Q psy17691        547 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                            +++.++.+++..+++|+. ++|.|+|..  ++....|..+|||+-|. .++-|++++|||++|+|||+-.-
T Consensus       437 ------dG~~~eeLk~la~elgL~-d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdv  504 (578)
T PRK15490        437 ------DGDLRAEAQKRAEQLGIL-ERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPA  504 (578)
T ss_pred             ------CchhHHHHHHHHHHcCCC-CcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCC
Confidence                  455667899999999995 899999974  56667788999997654 55669999999999999998654

>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.03  E-value=3.2e-09  Score=116.60  Aligned_cols=151  Identities=14%  Similarity=0.061  Sum_probs=116.4

Q ss_pred             CCcEEEecCCcc--cccChhhHHHHHHHHhc------ccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCc
Q psy17691        473 EDAIVYCNFNQL--YKIDPSTLQMWVNVLKA------VPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPN  544 (673)
Q Consensus       473 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~------~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (673)
                      ++..++++.+++  .|..+.+++++..+.+.      .|+.+|+++|                                 
T Consensus       230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG---------------------------------  276 (415)
T cd03816         230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITG---------------------------------  276 (415)
T ss_pred             CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEe---------------------------------
Confidence            344566666654  48888999999988753      4789999988                                 


Q ss_pred             hhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC----CCCcchhhhhhhcCCceeec
Q psy17691        545 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL----CNGHTTSMDVLWTGTPVVTL  620 (673)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p----~~g~~t~~eal~~GvPvvt~  620 (673)
                              .|+.++.+++.+++.|++ +.+.|.|.++.++....|..+||++-+.+    ++-+++++|||+||+|||+-
T Consensus       277 --------~G~~~~~l~~~~~~~~l~-~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s  347 (415)
T cd03816         277 --------KGPLKEKYLERIKELKLK-KVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAL  347 (415)
T ss_pred             --------cCccHHHHHHHHHHcCCC-cEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEe
Confidence                    455678899999999994 66666788999999999999999974222    34589999999999999996


Q ss_pred             CCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCC---HHHHHHHHhhh
Q psy17691        621 PGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD---RDYCEKALLYH  671 (673)
Q Consensus       621 ~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d---~~~~~~~~~~~  671 (673)
                      ......     .++.. |-..++..|.+++.+...+|.+|   ++.+.+|+...
T Consensus       348 ~~~~~~-----eiv~~-~~~G~lv~d~~~la~~i~~ll~~~~~~~~~~~m~~~~  395 (415)
T cd03816         348 DFKCID-----ELVKH-GENGLVFGDSEELAEQLIDLLSNFPNRGKLNSLKKGA  395 (415)
T ss_pred             CCCCHH-----HHhcC-CCCEEEECCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            553222     23433 55566668999999999999999   99999887654

The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=7.5e-09  Score=103.95  Aligned_cols=123  Identities=19%  Similarity=0.158  Sum_probs=114.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q psy17691        131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG---KLTDALLHY  207 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~  207 (673)
                      +.++-+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+|+++.|++++.+..+|.+++.+.   ...++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            47778888999999999999999999999999999999999999999999999999999999987764   357899999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        208 KEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       208 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                      +++++.+|++..+.+.||..+++.|+|.+|+..++..++..|.+..
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            9999999999999999999999999999999999999999886543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.02  E-value=1.3e-09  Score=87.30  Aligned_cols=67  Identities=30%  Similarity=0.540  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q psy17691        183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ-DIQGALQCYSRAIQINP  249 (673)
Q Consensus       183 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~Al~l~p  249 (673)
                      ++..|.++|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|+++|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34566666666666666666666666666666666666666666666666 56666666666666665

...

>PLN02501 digalactosyldiacylglycerol synthase

Probab=99.00  E-value=1.3e-09  Score=121.09  Aligned_cols=147  Identities=11%  Similarity=-0.012  Sum_probs=109.0

Q ss_pred             cccCCCC--CcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCc
Q psy17691        467 QQYGLPE--DAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPN  544 (673)
Q Consensus       467 ~~~~l~~--~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (673)
                      .++|++.  ..+.|..--...|..+.++++++.+....|+.+|+++|                                 
T Consensus       538 r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVG---------------------------------  584 (794)
T PLN02501        538 RELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFG---------------------------------  584 (794)
T ss_pred             HhcCCccccCceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEc---------------------------------
Confidence            4566653  23444432234599999999999999889999999998                                 


Q ss_pred             hhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceeecCCC
Q psy17691        545 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPGE  623 (673)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g~  623 (673)
                              +|+.++.+++.+.++|+   +|.|+|..+...  ..|+.+|||+- |..++-|+|++|||+||+|||+-..+
T Consensus       585 --------DGP~reeLe~la~eLgL---~V~FLG~~dd~~--~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~p  651 (794)
T PLN02501        585 --------NGEDAHEVQRAAKRLDL---NLNFLKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHP  651 (794)
T ss_pred             --------CCccHHHHHHHHHHcCC---EEEecCCCCCHH--HHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCC
Confidence                    57777889998888888   389998765332  56778999955 56778899999999999999987654


Q ss_pred             cchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHH
Q psy17691        624 TLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEK  666 (673)
Q Consensus       624 ~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~  666 (673)
                      ..      .++. -|-..++..+.+++++.+.++..|++.+..
T Consensus       652 G~------e~V~-~g~nGll~~D~EafAeAI~~LLsd~~~rl~  687 (794)
T PLN02501        652 SN------EFFR-SFPNCLTYKTSEDFVAKVKEALANEPQPLT  687 (794)
T ss_pred             CC------ceEe-ecCCeEecCCHHHHHHHHHHHHhCchhhhH
Confidence            21      1111 133445568999999999999988875543

>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.00  E-value=3.2e-09  Score=118.58  Aligned_cols=153  Identities=14%  Similarity=0.110  Sum_probs=114.5

Q ss_pred             CCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhh
Q psy17691        472 PEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWL  549 (673)
Q Consensus       472 ~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (673)
                      +.+.++++.++++.  |-.+.+++++..+.+..|+.+++++|.. . +                                
T Consensus       290 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g-~-~--------------------------------  335 (475)
T cd03813         290 EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPT-D-E--------------------------------  335 (475)
T ss_pred             CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCC-C-c--------------------------------
Confidence            34566777778764  7788899999999999999999998810 0 0                                


Q ss_pred             ccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceeecCCCcchhh
Q psy17691        550 LKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPGETLASR  628 (673)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r  628 (673)
                         ...-.+.+++..++.|+. ++|.|+|   .++....|..+|+++- |..++.|++++|||++|+|||+-.-....  
T Consensus       336 ---~~~~~~e~~~li~~l~l~-~~V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~--  406 (475)
T cd03813         336 ---DPEYAEECRELVESLGLE-DNVKFTG---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCR--  406 (475)
T ss_pred             ---ChHHHHHHHHHHHHhCCC-CeEEEcC---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChH--
Confidence               112245678888899994 9999999   4456667779999954 56788899999999999999995433322  


Q ss_pred             hHHHHHHh-----cCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        629 VAASQLAT-----LGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       629 ~~~~~l~~-----~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                         .++..     +|-..++.  .|.+++.+...++.+|++.+++++..
T Consensus       407 ---elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~  452 (475)
T cd03813         407 ---ELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEA  452 (475)
T ss_pred             ---HHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence               23333     23445443  58999999999999999999888654

Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.00  E-value=1e-08  Score=114.24  Aligned_cols=140  Identities=16%  Similarity=0.136  Sum_probs=116.7

Q ss_pred             CCCChhHH---HHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHh
Q psy17691        113 SPDDGTTF---SYIISVLLL---IQVSEAEECYNTALRLCPTHADSLNNLANIKREQG--------YIEEATRLYLKALE  178 (673)
Q Consensus       113 ~p~~~~~~---~~~~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g--------~~~eA~~~~~~al~  178 (673)
                      .|.+..+|   ..+..++..   ++.++|+.+|++|++++|+++.++..++.++....        +..++.+..++++.
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            35555555   333334433   35889999999999999999999999988876542        34566777777666


Q ss_pred             h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        179 V--FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       179 ~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                      +  +|..+.++.-+|..+...|++++|...++++++++| +..+|..+|.++...|++++|++.|++|++++|.++.
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            4  777888999999999999999999999999999999 5889999999999999999999999999999999875

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.99  E-value=2.7e-08  Score=105.10  Aligned_cols=124  Identities=18%  Similarity=0.146  Sum_probs=120.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       146 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  225 (673)
                      +|....+++..+..++..|++++|+..++..++..|+|+..+...+.++...++.++|.+.+++++.++|+.+..+.++|
T Consensus       302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       226 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ++|.+.|++.+|+..+++.+.-+|+++..|..|++.|..+|+..
T Consensus       382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~  425 (484)
T COG4783         382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA  425 (484)
T ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence            99999999999999999999999999999999999999999875

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.99  E-value=2.1e-08  Score=93.16  Aligned_cols=125  Identities=26%  Similarity=0.252  Sum_probs=108.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHH
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASV  193 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~  193 (673)
                      +..+...+..++..++...+++.++.+|+.   ..+.+.+|.++...|++++|...|++++...|+.   ..+.+.++.+
T Consensus        15 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~   94 (145)
T PF09976_consen   15 YEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI   94 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            334444456889999999999999999998   5678889999999999999999999999988665   4678899999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI  245 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al  245 (673)
                      +..+|++++|+..++. +.-.+-.+.++..+|.+|..+|++++|+..|++|+
T Consensus        95 ~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   95 LLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999999999976 34444557788999999999999999999999985

>KOG1127|consensus

Probab=98.98  E-value=6.8e-09  Score=116.52  Aligned_cols=197  Identities=16%  Similarity=0.089  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhh
Q psy17691          3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSS   82 (673)
Q Consensus         3 ~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~   82 (673)
                      ..|...|-++++++|+.+.++..||.+|+...+...+.-                    +|.++-.              
T Consensus       475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~k--------------------Cf~KAFe--------------  520 (1238)
T KOG1127|consen  475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKK--------------------CFDKAFE--------------  520 (1238)
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHhc--------------
Confidence            467888888889999988898888888876542111111                    2222222              


Q ss_pred             hcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q psy17691         83 DFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTH--ADSLNNLANI  159 (673)
Q Consensus        83 ~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~Lg~~  159 (673)
                                                   +++.+..++..+ ..+.+..+++.|....-.+-+..|..  ...|..+|..
T Consensus       521 -----------------------------LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  521 -----------------------------LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             -----------------------------CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence                                         333333443222 22333556666666655555544432  2344456666


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691        160 KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ  239 (673)
Q Consensus       160 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~  239 (673)
                      |.+.+++..|+..|+.+++.+|++.+.|..+|.+|...|+|..|++.|.++..++|.+....+..+.+...+|+|.+|+.
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald  651 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD  651 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        240 CYSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       240 ~~~~Al~l~p~~~~a~~~La~~~  262 (673)
                      .++..+............|+.++
T Consensus       652 ~l~~ii~~~s~e~~~q~gLaE~~  674 (1238)
T KOG1127|consen  652 ALGLIIYAFSLERTGQNGLAESV  674 (1238)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHH
Confidence            66666655444444444444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.97  E-value=2.4e-09  Score=85.76  Aligned_cols=68  Identities=31%  Similarity=0.452  Sum_probs=63.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q psy17691        148 THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG-KLTDALLHYKEAIRIQP  215 (673)
Q Consensus       148 ~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p  215 (673)
                      +++.+|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            357889999999999999999999999999999999999999999999999 79999999999999987

...

>KOG1156|consensus

Probab=98.97  E-value=5.4e-09  Score=113.03  Aligned_cols=156  Identities=18%  Similarity=0.196  Sum_probs=148.0

Q ss_pred             CCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy17691        114 PDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV  193 (673)
Q Consensus       114 p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  193 (673)
                      |.....+..+...+..++|.+.+...++.++..|++.+.+...|..+..+|+-++|..+.+.+++.++.+..+|.-+|.+
T Consensus         5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~   84 (700)
T KOG1156|consen    5 PKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL   84 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence            44445566677788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +...++|++|+++|+.|+.++|+|..+|.-++.+..++++++.....-.+.+++.|.....|..++..+...|++.
T Consensus        85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~  160 (700)
T KOG1156|consen   85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK  160 (700)
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999888886

>PLN02949 transferase, transferring glycosyl groups

Probab=98.97  E-value=2.9e-09  Score=117.67  Aligned_cols=155  Identities=15%  Similarity=0.053  Sum_probs=115.3

Q ss_pred             EEEecCCcc--cccChhhHHHHHHHHhc----ccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhh
Q psy17691        476 IVYCNFNQL--YKIDPSTLQMWVNVLKA----VPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWL  549 (673)
Q Consensus       476 ~~~~~~~~~--~K~~~~~~~~~~~il~~----~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (673)
                      .+|.+++++  .|..+..+++|++++++    .|+.+|+++|.....                                 
T Consensus       269 ~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~---------------------------------  315 (463)
T PLN02949        269 PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNK---------------------------------  315 (463)
T ss_pred             CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCc---------------------------------
Confidence            456666754  59999999999998764    478899998821000                                 


Q ss_pred             ccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeecCCCcchhh
Q psy17691        550 LKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTLPGETLASR  628 (673)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~~g~~~~~r  628 (673)
                        .+....+.+++.+++.|+. ++|.|.|..+.++....|+.+|+++-| ..++-|++.+|||++|+|||+........ 
T Consensus       316 --~~~~~~~eL~~la~~l~L~-~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~-  391 (463)
T PLN02949        316 --EDEERLQKLKDRAKELGLD-GDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM-  391 (463)
T ss_pred             --ccHHHHHHHHHHHHHcCCC-CcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc-
Confidence              0122246788899999994 899999999999999999999999876 47788999999999999999865221100 


Q ss_pred             hHHHHHHh--cCCCccccCCHHHHHHHHHHhcC-CHHHHHHHHhh
Q psy17691        629 VAASQLAT--LGCPELIARTHKEYQDIAIRLGT-DRDYCEKALLY  670 (673)
Q Consensus       629 ~~~~~l~~--~gl~~~ia~~~~~yv~~a~~la~-d~~~~~~~~~~  670 (673)
                         .+...  -|...+.+.|.+++.+...++.+ |++.+.+|+..
T Consensus       392 ---eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~~~~~r~~m~~~  433 (463)
T PLN02949        392 ---DIVLDEDGQQTGFLATTVEEYADAILEVLRMRETERLEIAAA  433 (463)
T ss_pred             ---eeeecCCCCcccccCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence               11111  14456777899999999999998 57777777654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.97  E-value=1.9e-08  Score=116.17  Aligned_cols=133  Identities=12%  Similarity=0.110  Sum_probs=119.5

Q ss_pred             cCCCChhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------
Q psy17691        112 LSPDDGTTFSYIISVL-LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA------  184 (673)
Q Consensus       112 l~p~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~------  184 (673)
                      .+|.+..++..+...+ ..+++++|+..++.+++.+|+....++.+|.++.+.+++.+|...  .++...+.+.      
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve  103 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE  103 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence            4677888886666655 799999999999999999999999999999999999988888766  6666655554      


Q ss_pred             -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        185 -------------AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       185 -------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                                   .+++.+|.+|.+.|+.++|.+.|+++++.+|+++.+++++|..|... +.++|++++.+|++.
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence                         89999999999999999999999999999999999999999999999 999999999999875

>KOG1130|consensus

Probab=98.96  E-value=2.4e-09  Score=109.72  Aligned_cols=268  Identities=18%  Similarity=0.171  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCCC---------------------cHHHHHHHHHHHHHcCChh
Q psy17691          2 IDLAIDTYRRAIELQPNFP----DAYCNLANALKEKGQPN---------------------FPDAYCNLANALKEKGQIN   56 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~----~a~~~Lg~~~~~~g~~~---------------------~a~a~~~la~~l~~~g~~~   56 (673)
                      +...+..|+.|++.-.++.    ..|..||++|..++++.                     .+.+.-++|..+...|.++
T Consensus        33 craGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fd  112 (639)
T KOG1130|consen   33 CRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFD  112 (639)
T ss_pred             hhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccc
Confidence            4567889999999987764    35666777777777533                     3344446788888888888


Q ss_pred             hhcCChhhHH---hhcCC-----CchhhhhhhhhhcCCCcccccccccCCCC------chhHHHHHHH--hc--CCCC--
Q psy17691         57 VLHKPPYKYT---RELAP-----GNRIRIGYVSSDFGNHPTSHLMQSVPGMH------NKSRVEIFCY--AL--SPDD--  116 (673)
Q Consensus        57 ~A~~~~~~~~---~~l~p-----~~~~~l~~~~~~l~~~~~a~~~~~~~~~~------~~~a~~~~~~--~l--~p~~--  116 (673)
                      +|+..+++.+   .++..     -...+++.+|..-|+.-....-+......      .+.+++.+..  .+  ...+  
T Consensus       113 eA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~  192 (639)
T KOG1130|consen  113 EALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRL  192 (639)
T ss_pred             hHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            8876544332   22221     11356666666655543222111111000      0011111100  00  0011  


Q ss_pred             --hhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------
Q psy17691        117 --GTTFS-YIISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFP------  181 (673)
Q Consensus       117 --~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p------  181 (673)
                        ..++. ++..+|.+|+|++|+..-+.-+.+..+.      -.++.++|+++.-+|+++.|+++|++.+.+.-      
T Consensus       193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~  272 (639)
T KOG1130|consen  193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT  272 (639)
T ss_pred             hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence              11221 1223445666666666666555554332      23566666666666666666666666544321      


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Q psy17691        182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP------SFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN-----PG  250 (673)
Q Consensus       182 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~-----p~  250 (673)
                      ..+...+.||+.|.-..++++||.+.++-+.+..      ....+++.||+.+..+|..++|+.+.++.+++.     +.
T Consensus       273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s  352 (639)
T KOG1130|consen  273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS  352 (639)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence            1134455666666666666666666666555422      123455666666666666666666666666662     21


Q ss_pred             -CHHHHHHHHHHHHHcCCCc
Q psy17691        251 -FADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       251 -~~~a~~~La~~~~~~g~~~  269 (673)
                       ...+..||...-..+|..+
T Consensus       353 gelTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  353 GELTARDNLSDLILELGQED  372 (639)
T ss_pred             hhhhhhhhhHHHHHHhCCCc
Confidence             3345556666666666655

>KOG1127|consensus

Probab=98.95  E-value=9e-09  Score=115.58  Aligned_cols=161  Identities=20%  Similarity=0.287  Sum_probs=127.8

Q ss_pred             HHhcCCCChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HH
Q psy17691        109 CYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF--AA  185 (673)
Q Consensus       109 ~~~l~p~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~  185 (673)
                      ++.+++..+.+|..++.+++ ..+...|..+|++|.++++.+.+++...+..|.+..++++|....-.+-+..|..  ..
T Consensus       484 alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~  563 (1238)
T KOG1127|consen  484 ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKE  563 (1238)
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHh
Confidence            45567777777877777665 4477788888888888888888888888888888888888888766666666654  34


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      .|..+|..|.+.++...|+..|+.+++.+|++..+|..+|.+|...|++.-|++.|.+|..++|.+..+.+..+.+....
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~  643 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN  643 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence            56667888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCc
Q psy17691        266 GKRG  269 (673)
Q Consensus       266 g~~~  269 (673)
                      |+|.
T Consensus       644 GkYk  647 (1238)
T KOG1127|consen  644 GKYK  647 (1238)
T ss_pred             hhHH
Confidence            8876

>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.94  E-value=7e-09  Score=113.93  Aligned_cols=152  Identities=18%  Similarity=0.153  Sum_probs=112.8

Q ss_pred             cEEEecCCcc--cccChhhHHHHHHHHhcccC-----eeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691        475 AIVYCNFNQL--YKIDPSTLQMWVNVLKAVPN-----SILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL  547 (673)
Q Consensus       475 ~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (673)
                      ..+|++++++  .|.....+++|+.+.++.|+     .+|+++|....+                               
T Consensus       237 ~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~-------------------------------  285 (419)
T cd03806         237 ENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNE-------------------------------  285 (419)
T ss_pred             CcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCc-------------------------------
Confidence            4566666754  59999999999999988775     899998821000                               


Q ss_pred             hhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecC-CCcc
Q psy17691        548 WLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLP-GETL  625 (673)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~-g~~~  625 (673)
                          .+....+.|++..+++|+. ++|.|+|.+|.++....|+.+|+++-|. .++=|.+.+|||++|+|||+.. |...
T Consensus       286 ----~~~~~~~~L~~~~~~l~l~-~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~  360 (419)
T cd03806         286 ----DDEKRVEDLKLLAKELGLE-DKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL  360 (419)
T ss_pred             ----ccHHHHHHHHHHHHHhCCC-CeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc
Confidence                0112346788888899994 8999999999999999999999998765 5667999999999999999865 2211


Q ss_pred             hhhhHHHHHH--hcCCCccccCCHHHHHHHHHHhcCCHH-HHHHH
Q psy17691        626 ASRVAASQLA--TLGCPELIARTHKEYQDIAIRLGTDRD-YCEKA  667 (673)
Q Consensus       626 ~~r~~~~~l~--~~gl~~~ia~~~~~yv~~a~~la~d~~-~~~~~  667 (673)
                      .     .++.  .-|-..+++.|.+++.+...++.+|++ .+..+
T Consensus       361 ~-----~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~~~~~~~~  400 (419)
T cd03806         361 L-----DIVVPWDGGPTGFLASTAEEYAEAIEKILSLSEEERLRI  400 (419)
T ss_pred             h-----heeeccCCCCceEEeCCHHHHHHHHHHHHhCCHHHHHHH
Confidence            1     1221  024456667899999999999998654 44333

ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.94  E-value=6.3e-07  Score=107.69  Aligned_cols=252  Identities=17%  Similarity=0.166  Sum_probs=182.0

Q ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCC----------------CcHHHHHHHHHHHHHcCChhhhcCChh
Q psy17691          1 LIDLAIDTYRRAIELQPN-FPDAYCNLANALKEKGQP----------------NFPDAYCNLANALKEKGQINVLHKPPY   63 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~-~~~a~~~Lg~~~~~~g~~----------------~~a~a~~~la~~l~~~g~~~~A~~~~~   63 (673)
                      ++++|...|+++.+.... +...|..+-..|.+.|+.                .+...|..+...|.+.|+.++|.. .+
T Consensus       452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~-lf  530 (1060)
T PLN03218        452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG-AY  530 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH-HH
Confidence            467899999998876532 567778888888888862                245667777888889999888875 33


Q ss_pred             hHHh--hcCCCch--hhhhhhhhhcCCCcccccccccCCCCchhHHHHHHH------hcCCCChhHHHHHHHHHHcCCHH
Q psy17691         64 KYTR--ELAPGNR--IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY------ALSPDDGTTFSYIISVLLLIQVS  133 (673)
Q Consensus        64 ~~~~--~l~p~~~--~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~------~l~p~~~~~~~~~~~~~~~g~~~  133 (673)
                      ....  .+.|+..  ..+...+...+..              ..+.+.+..      .+.|+....-..+..+.+.|+++
T Consensus       531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~--------------deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld  596 (1060)
T PLN03218        531 GIMRSKNVKPDRVVFNALISACGQSGAV--------------DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD  596 (1060)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHCCCH--------------HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence            3332  2334432  2222233333322              222222211      23455433335556677899999


Q ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        134 EAEECYNTALRLC-PTHADSLNNLANIKREQGYIEEATRLYLKALEV--FPEFAAAHSNLASVLQQQGKLTDALLHYKEA  210 (673)
Q Consensus       134 ~A~~~~~~al~~~-p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  210 (673)
                      +|.+.|+++.+.+ +.+...|..+...|.+.|++++|.+.|++..+.  .|+ ...|..+...|.+.|++++|.+.+++.
T Consensus       597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM  675 (1060)
T PLN03218        597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDA  675 (1060)
T ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999999998876 456788899999999999999999999988876  343 668888889999999999999999998


Q ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCc
Q psy17691        211 IRIQ-PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI--NPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       211 l~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l--~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      .+.. +.+...|..+...|.+.|++++|.+.|++..+.  .| +...|..|...|.+.|+++
T Consensus       676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~e  736 (1060)
T PLN03218        676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLP  736 (1060)
T ss_pred             HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHH
Confidence            8764 345778899999999999999999999987653  44 4677888889998888887

>KOG1128|consensus

Probab=98.94  E-value=1.1e-08  Score=112.03  Aligned_cols=133  Identities=19%  Similarity=0.223  Sum_probs=90.2

Q ss_pred             HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        137 ECYNTALRLCP-THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP  215 (673)
Q Consensus       137 ~~~~~al~~~p-~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p  215 (673)
                      .+|+++.++.. .+..+...+|......++|+++.++++.+++++|-....|+++|.+..+.++++.|.++|.+++.++|
T Consensus       471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P  550 (777)
T KOG1128|consen  471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP  550 (777)
T ss_pred             HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            33444444321 23445566666666667777777777777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       216 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ++.++|+|++..|.++|+..+|...+++|++.+-++...|-|...+..+.|.++
T Consensus       551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~e  604 (777)
T KOG1128|consen  551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFE  604 (777)
T ss_pred             CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHH
Confidence            777777777777777777777777777777777666777777766666666665

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.93  E-value=3.1e-08  Score=87.99  Aligned_cols=103  Identities=19%  Similarity=0.257  Sum_probs=93.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHH
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASV  193 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~  193 (673)
                      +..+..+...|++++|+..|+++++.+|++   ..+++.+|.++...|++++|+..|++++..+|++   ..++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            455566778999999999999999999876   6789999999999999999999999999999885   6789999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYS  222 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~  222 (673)
                      +...|++++|+..++++++..|++..+..
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            99999999999999999999999876543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

Probab=98.93  E-value=1e-08  Score=114.43  Aligned_cols=145  Identities=12%  Similarity=0.113  Sum_probs=107.1

Q ss_pred             CCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhh
Q psy17691        472 PEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWL  549 (673)
Q Consensus       472 ~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (673)
                      +.+.+++++++++.  |.    ++...++++..|+.+|+++|                                      
T Consensus       260 ~~~~~~i~~vGrl~~~K~----~~~li~a~~~~~~~~l~ivG--------------------------------------  297 (465)
T PLN02871        260 EPEKPLIVYVGRLGAEKN----LDFLKRVMERLPGARLAFVG--------------------------------------  297 (465)
T ss_pred             CCCCeEEEEeCCCchhhh----HHHHHHHHHhCCCcEEEEEe--------------------------------------
Confidence            34566777777764  54    44455566778999999988                                      


Q ss_pred             ccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhh
Q psy17691        550 LKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASR  628 (673)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r  628 (673)
                         .++.++.+++.++.     .+|+|+|.++.++....|..+||++-|. .++-|.+++|||++|+|||+-....... 
T Consensus       298 ---~G~~~~~l~~~~~~-----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~e-  368 (465)
T PLN02871        298 ---DGPYREELEKMFAG-----TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARAGGIPD-  368 (465)
T ss_pred             ---CChHHHHHHHHhcc-----CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCCCcHh-
Confidence               34455566665442     4799999999999999999999997654 6677999999999999999865432211 


Q ss_pred             hHHHHHHh--cCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        629 VAASQLAT--LGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       629 ~~~~~l~~--~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                          ++..  .|-..++.  .|.+++.+...++.+|++.+.+++...
T Consensus       369 ----iv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a  411 (465)
T PLN02871        369 ----IIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAA  411 (465)
T ss_pred             ----hhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence                3332  25555554  489999999999999999998887643

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.92  E-value=2.2e-08  Score=95.48  Aligned_cols=100  Identities=28%  Similarity=0.287  Sum_probs=82.7

Q ss_pred             HHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17691        119 TFSYI-ISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL  194 (673)
Q Consensus       119 ~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  194 (673)
                      .+..+ ..+...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+.+|+++++++|.+...+.++|.++
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~  116 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC  116 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            34333 44456899999999999999997763   458999999999999999999999999999999999999999999


Q ss_pred             H-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q psy17691        195 Q-------QQGKLT-------DALLHYKEAIRIQPSFA  218 (673)
Q Consensus       195 ~-------~~g~~~-------eA~~~~~~al~~~p~~~  218 (673)
                      .       .+|+++       +|+.+|++++..+|++.
T Consensus       117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            8       777776       55666667777787653

>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.92  E-value=1.3e-08  Score=110.41  Aligned_cols=163  Identities=17%  Similarity=0.115  Sum_probs=122.0

Q ss_pred             ccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccC
Q psy17691        466 RQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVP  543 (673)
Q Consensus       466 r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (673)
                      |..++.+.+.++|+.++++.  |..+.+++++.++.++.|+.+|+++|.....                           
T Consensus       211 ~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~---------------------------  263 (398)
T cd03800         211 RARLLRDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDD---------------------------  263 (398)
T ss_pred             HHhhccCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCc---------------------------
Confidence            44566777778888888765  7888999999999988899999998721000                           


Q ss_pred             chhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeecCC
Q psy17691        544 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                              ........++...+..|+. ++|.|.|.++.++....|..+|+++-| ..++-|++.+|||++|+|||+-..
T Consensus       264 --------~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~  334 (398)
T cd03800         264 --------ILAMDEEELRELARELGVI-DRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAV  334 (398)
T ss_pred             --------chhhhhHHHHHHHHhcCCC-ceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCC
Confidence                    0011223466777888885 899999999999999999999999775 466779999999999999998665


Q ss_pred             CcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        623 ETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       623 ~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      .....     ++..-+ ..++.  .|.+++++...++.+|++.+.++...
T Consensus       335 ~~~~e-----~i~~~~-~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~  378 (398)
T cd03800         335 GGPRD-----IVVDGV-TGLLVDPRDPEALAAALRRLLTDPALRRRLSRA  378 (398)
T ss_pred             CCHHH-----HccCCC-CeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            43222     333322 23444  47999999999999999998887654

The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.

>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known

Probab=98.92  E-value=1.1e-08  Score=108.05  Aligned_cols=156  Identities=21%  Similarity=0.203  Sum_probs=121.5

Q ss_pred             ccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCch
Q psy17691        468 QYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNS  545 (673)
Q Consensus       468 ~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (673)
                      ....+.+.++++.+++.  .|..+.+++++..+....|+.+|++.|                                  
T Consensus       192 ~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G----------------------------------  237 (374)
T cd03801         192 RLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVG----------------------------------  237 (374)
T ss_pred             hcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEe----------------------------------
Confidence            34445556677777754  588899999999999999999999887                                  


Q ss_pred             hhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC-CCCcchhhhhhhcCCceeecCCCc
Q psy17691        546 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLPGET  624 (673)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p-~~g~~t~~eal~~GvPvvt~~g~~  624 (673)
                             .+.....+++.+...+. .++|.|.|.++.+++...|..+|+++.|.. .+.|++.+|||++|+|||+-....
T Consensus       238 -------~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~  309 (374)
T cd03801         238 -------DGPLREELEALAAELGL-GDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGG  309 (374)
T ss_pred             -------CcHHHHHHHHHHHHhCC-CcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCC
Confidence                   33445566777777888 489999999999999999999999998764 467999999999999999988654


Q ss_pred             chhhhHHHHHHhcCCCccccC--CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        625 LASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       625 ~~~r~~~~~l~~~gl~~~ia~--~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      +..     ++.. +-..++..  +.++.++...++.+|++.+.+++...
T Consensus       310 ~~~-----~~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~  352 (374)
T cd03801         310 IPE-----VVED-GETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAA  352 (374)
T ss_pred             hhH-----HhcC-CcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            443     2222 33334443  36999999999999999998887653

Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.

>PLN02939 transferase, transferring glycosyl groups

Probab=98.92  E-value=1.2e-08  Score=117.66  Aligned_cols=189  Identities=12%  Similarity=0.003  Sum_probs=123.7

Q ss_pred             eeccCccccccccccccCc-ccCc--------ccccccccccCCCC---CcEEEecCCccc--ccChhhHHHHHHHHhcc
Q psy17691        437 VLQNGLATNQTNTKTATGE-EVPQ--------SIVITSRQQYGLPE---DAIVYCNFNQLY--KIDPSTLQMWVNVLKAV  502 (673)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~r~~~~l~~---~~~~~~~~~~~~--K~~~~~~~~~~~il~~~  502 (673)
                      .|.||+.+..+++...+.. ..+.        ......|+++||+.   +.++||+++|+.  |-.+.+++++.+++.  
T Consensus       729 gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--  806 (977)
T PLN02939        729 GILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--  806 (977)
T ss_pred             EEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh--
Confidence            5889998776654431100 0000        01234678899985   468899999875  889999999998885  


Q ss_pred             cCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChh---hhhhHHHHHHHcCCCCCeEEeccC
Q psy17691        503 PNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAV---GEANIQATAQALGLDQHRILFSNV  579 (673)
Q Consensus       503 p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~rv~~~~~  579 (673)
                      ++.+|+++|                                         +|+   .++.+++....+|+ .+||.|.|.
T Consensus       807 ~dvqLVIvG-----------------------------------------dGp~~~~e~eL~~La~~l~l-~drV~FlG~  844 (977)
T PLN02939        807 LGGQFVLLG-----------------------------------------SSPVPHIQREFEGIADQFQS-NNNIRLILK  844 (977)
T ss_pred             cCCEEEEEe-----------------------------------------CCCcHHHHHHHHHHHHHcCC-CCeEEEEec
Confidence            578999888                                         221   24567777888888 489999998


Q ss_pred             cChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeec-CCCcchhhh---HHHHHHhcCCCcccc--CCHHHHHH
Q psy17691        580 AAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTL-PGETLASRV---AASQLATLGCPELIA--RTHKEYQD  652 (673)
Q Consensus       580 ~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~-~g~~~~~r~---~~~~l~~~gl~~~ia--~~~~~yv~  652 (673)
                      .+...-...|..+|+||-| .-++-|.|.+|||++|+|+|+. .|. ...=+   .......-|-++++.  .|++++.+
T Consensus       845 ~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG-L~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~  923 (977)
T PLN02939        845 YDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG-LNDSVFDFDDETIPVELRNGFTFLTPDEQGLNS  923 (977)
T ss_pred             cCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC-CcceeecCCccccccCCCceEEecCCCHHHHHH
Confidence            7766556789999999764 5678899999999999776653 332 11100   000000012334432  47777766


Q ss_pred             HHHHhc----CCHHHHHHHHhh
Q psy17691        653 IAIRLG----TDRDYCEKALLY  670 (673)
Q Consensus       653 ~a~~la----~d~~~~~~~~~~  670 (673)
                      ...++.    .|++.+.+++..
T Consensus       924 AL~rAL~~~~~dpe~~~~L~~~  945 (977)
T PLN02939        924 ALERAFNYYKRKPEVWKQLVQK  945 (977)
T ss_pred             HHHHHHHHhccCHHHHHHHHHH
Confidence            554433    588888888654

>KOG1130|consensus

Probab=98.92  E-value=1.8e-08  Score=103.33  Aligned_cols=125  Identities=18%  Similarity=0.119  Sum_probs=94.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHH
Q psy17691        122 YIISVLLLIQVSEAEECYNTALRLC----P--THADSLNNLANIKREQGYIEEATRLYLKALEVFP------EFAAAHSN  189 (673)
Q Consensus       122 ~~~~~~~~g~~~~A~~~~~~al~~~----p--~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~  189 (673)
                      .+.++..+|+++.|+++|++.+.+.    .  -.+...+.||+.|.-..++++|+.++++-+++..      ....++..
T Consensus       241 lgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwS  320 (639)
T KOG1130|consen  241 LGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWS  320 (639)
T ss_pred             cchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            3455667999999999999987763    2  2355788999999999999999999999887743      33678899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        190 LASVLQQQGKLTDALLHYKEAIRIQ----PS--FADAYSNMGNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       190 la~~~~~~g~~~eA~~~~~~al~~~----p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  246 (673)
                      ||..+...|..++|+.+.++.+++.    ..  ...+..|+...-...|.-+.-..--+..+.
T Consensus       321 Lgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~~te~~i~  383 (639)
T KOG1130|consen  321 LGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLVDDTELIID  383 (639)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccCCcHHHHhh
Confidence            9999999999999999988887763    22  234667777777777765544444443333

>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria

Probab=98.91  E-value=1.2e-08  Score=108.68  Aligned_cols=149  Identities=15%  Similarity=0.072  Sum_probs=115.9

Q ss_pred             cEEEecCCc--ccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        475 AIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       475 ~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      .+.++++++  ..|..+.+++++.++.+..|+.++.++|                                         
T Consensus       179 ~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G-----------------------------------------  217 (355)
T cd03799         179 PLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVG-----------------------------------------  217 (355)
T ss_pred             CeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEE-----------------------------------------
Confidence            444455554  4688899999999988888999999887                                         


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-C------CCCcchhhhhhhcCCceeecCCCcc
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-L------CNGHTTSMDVLWTGTPVVTLPGETL  625 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p------~~g~~t~~eal~~GvPvvt~~g~~~  625 (673)
                      .+.....+.+.+++.|+ .++|.|.|.++.++....|..+|+++-|. .      ++.|++.+|||++|+|||+......
T Consensus       218 ~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~  296 (355)
T cd03799         218 DGPLRDELEALIAELGL-EDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGI  296 (355)
T ss_pred             CCccHHHHHHHHHHcCC-CCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCc
Confidence            23345567788888888 48999999999999999999999998876 3      6779999999999999998665433


Q ss_pred             hhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        626 ASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       626 ~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ..     ++.. +-..++.  .|.+++++....+.+|++.+.++++..
T Consensus       297 ~~-----~i~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a  338 (355)
T cd03799         297 PE-----LVED-GETGLLVPPGDPEALADAIERLLDDPELRREMGEAG  338 (355)
T ss_pred             ch-----hhhC-CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            22     3332 3234443  389999999999999999888777653

amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.

>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding

Probab=98.91  E-value=7e-09  Score=111.98  Aligned_cols=146  Identities=16%  Similarity=0.128  Sum_probs=112.1

Q ss_pred             EEecCCc--ccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCCh
Q psy17691        477 VYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPA  554 (673)
Q Consensus       477 ~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (673)
                      +++++++  ..|..+..++++.++..+.|+.+|.++|                                         .+
T Consensus       206 ~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G-----------------------------------------~g  244 (372)
T cd04949         206 KIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYG-----------------------------------------YG  244 (372)
T ss_pred             eEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEE-----------------------------------------eC
Confidence            4444454  4688999999999999999999999988                                         23


Q ss_pred             hhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhhhHHHH
Q psy17691        555 VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQ  633 (673)
Q Consensus       555 ~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~  633 (673)
                      .....+.......|+. ++|.|.|.  .++....|+.+|++++|. .++.|++.+|||++|+|||+.......    ..+
T Consensus       245 ~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~----~~~  317 (372)
T cd04949         245 DEEEKLKELIEELGLE-DYVFLKGY--TRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGP----SEI  317 (372)
T ss_pred             chHHHHHHHHHHcCCc-ceEEEcCC--CCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCc----HHH
Confidence            3445677777888984 89999994  456778888999998876 557799999999999999986532111    112


Q ss_pred             HHhcCCCccccC--CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        634 LATLGCPELIAR--THKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       634 l~~~gl~~~ia~--~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      + .-|-..++..  |.++..+...++.+|++.+++++.+.
T Consensus       318 v-~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a  356 (372)
T cd04949         318 I-EDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAA  356 (372)
T ss_pred             c-ccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            2 2245556665  89999999999999999998887764

In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.91  E-value=2.1e-07  Score=109.23  Aligned_cols=265  Identities=11%  Similarity=0.033  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHHhh-
Q psy17691          3 DLAIDTYRRAIELQ-PNFPDAYCNLANALKEKGQ------------PNFPDAYCNLANALKEKGQINVLHKPPYKYTRE-   68 (673)
Q Consensus         3 ~eAi~~~~kAL~l~-P~~~~a~~~Lg~~~~~~g~------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~-   68 (673)
                      +++.+.+..+++.. ..+...+..|...|.+.|+            ..+...|..+...|...|+.++|... ++.... 
T Consensus       241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~l-f~~M~~~  319 (697)
T PLN03081        241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL-YYEMRDS  319 (697)
T ss_pred             HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH-HHHHHHc
Confidence            44555555555442 2245566666677777765            23445566677777777777777652 333222 


Q ss_pred             -cCCCch--hhhhhhhhhcCCCcccccccccCCCCchhHHH-HHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691         69 -LAPGNR--IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE-IFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALR  144 (673)
Q Consensus        69 -l~p~~~--~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~-~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  144 (673)
                       +.|+..  ..+...+...+....+...           .. .......++....-..+..|.+.|++++|...|++..+
T Consensus       320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i-----------~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~  388 (697)
T PLN03081        320 GVSIDQFTFSIMIRIFSRLALLEHAKQA-----------HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR  388 (697)
T ss_pred             CCCCCHHHHHHHHHHHHhccchHHHHHH-----------HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence             334332  2333344444433222110           11 11222334433334555666778888888888887754


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHH
Q psy17691        145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF-PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP--SFADAY  221 (673)
Q Consensus       145 ~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~  221 (673)
                         .+...|+.+...|.+.|+.++|++.|++..+.. .-+..++..+-..+...|+.++|.++|+...+...  .+...|
T Consensus       389 ---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y  465 (697)
T PLN03081        389 ---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY  465 (697)
T ss_pred             ---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence               356678888888888888888888888877643 22356677777888888888888888888876422  234577


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHH
Q psy17691        222 SNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLL  284 (673)
Q Consensus       222 ~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~  284 (673)
                      ..+..+|.+.|++++|.+.++++ ...| +...|..|...+...|+++         +.+.|++...|..+.
T Consensus       466 ~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~  535 (697)
T PLN03081        466 ACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL  535 (697)
T ss_pred             HhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence            88888888888888888888764 2333 3566888888888888877         567787766665554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.90  E-value=1.5e-07  Score=92.64  Aligned_cols=151  Identities=18%  Similarity=0.166  Sum_probs=122.2

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q psy17691        118 TTFSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLA  191 (673)
Q Consensus       118 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la  191 (673)
                      ..+..+...+..|++++|+..|++++...|..   ..+.+.+|.+++..|++++|+..+++.++..|++   ..+++.+|
T Consensus         7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g   86 (203)
T PF13525_consen    7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG   86 (203)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence            34566778889999999999999999998876   6789999999999999999999999999999987   56888888


Q ss_pred             HHHHHcC-----------CHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691        192 SVLQQQG-----------KLTDALLHYKEAIRIQPSFAD-----------------AYSNMGNTLKEMQDIQGALQCYSR  243 (673)
Q Consensus       192 ~~~~~~g-----------~~~eA~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~eA~~~~~~  243 (673)
                      .+++.+.           ...+|+..|++.++..|++..                 --..+|..|.+.|.+..|+..++.
T Consensus        87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~  166 (203)
T PF13525_consen   87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQY  166 (203)
T ss_dssp             HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred             HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            8876543           356899999999999999732                 234578899999999999999999


Q ss_pred             HHHhCCCCH---HHHHHHHHHHHHcCCC
Q psy17691        244 AIQINPGFA---DAHSNLASIHKDSGKR  268 (673)
Q Consensus       244 Al~l~p~~~---~a~~~La~~~~~~g~~  268 (673)
                      +++..|+..   +++..++..|..+|..
T Consensus       167 v~~~yp~t~~~~~al~~l~~~y~~l~~~  194 (203)
T PF13525_consen  167 VIENYPDTPAAEEALARLAEAYYKLGLK  194 (203)
T ss_dssp             HHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence            999999875   5677888888888864

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.89  E-value=2.5e-07  Score=93.42  Aligned_cols=152  Identities=9%  Similarity=-0.044  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q psy17691        118 TTFSYIISVLLLIQVSEAEECYNTALRLCPTHADS---LNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLA  191 (673)
Q Consensus       118 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la  191 (673)
                      ..+..+...+..|++++|+..|++++...|....+   .+.+|.++++.+++++|+..+++.++.+|++   ..+++.+|
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g  113 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG  113 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence            34566677788999999999999999999988655   4899999999999999999999999999987   56788899


Q ss_pred             HHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHH
Q psy17691        192 SVLQQQG---------------K---LTDALLHYKEAIRIQPSFAD-----------------AYSNMGNTLKEMQDIQG  236 (673)
Q Consensus       192 ~~~~~~g---------------~---~~eA~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~e  236 (673)
                      .++...+               +   ..+|+..|++.++..|++..                 --..+|..|.+.|++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~A  193 (243)
T PRK10866        114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVA  193 (243)
T ss_pred             HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            8864443               1   35788999999999998732                 23467788999999999


Q ss_pred             HHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCc
Q psy17691        237 ALQCYSRAIQINPGF---ADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       237 A~~~~~~Al~l~p~~---~~a~~~La~~~~~~g~~~  269 (673)
                      |+.-++.+++..|+.   .++...+...|..+|..+
T Consensus       194 A~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~  229 (243)
T PRK10866        194 VVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNA  229 (243)
T ss_pred             HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChH
Confidence            999999999998865   578888899999988765

>PLN02846 digalactosyldiacylglycerol synthase

Probab=98.88  E-value=1.4e-08  Score=110.98  Aligned_cols=131  Identities=15%  Similarity=0.067  Sum_probs=103.4

Q ss_pred             EEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCCh
Q psy17691        477 VYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPA  554 (673)
Q Consensus       477 ~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (673)
                      ++++++|+.  |..+.+++++.++.+..|+.+|+++|                                         +|
T Consensus       230 ~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivG-----------------------------------------dG  268 (462)
T PLN02846        230 GAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYG-----------------------------------------SG  268 (462)
T ss_pred             EEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEEC-----------------------------------------CC
Confidence            466677775  99999999999999889999999998                                         67


Q ss_pred             hhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHH
Q psy17691        555 VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQ  633 (673)
Q Consensus       555 ~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~  633 (673)
                      +.++.|++.+.+.|++ .++ |.|....+++++   .+|||+- |..++.|+|++|||+||+|||+-..+.      ..+
T Consensus       269 p~~~~L~~~a~~l~l~-~~v-f~G~~~~~~~~~---~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~------~~~  337 (462)
T PLN02846        269 EDSDEVKAAAEKLELD-VRV-YPGRDHADPLFH---DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS------NEF  337 (462)
T ss_pred             ccHHHHHHHHHhcCCc-EEE-ECCCCCHHHHHH---hCCEEEECCCcccchHHHHHHHHcCCcEEEecCCC------cce
Confidence            8888999999999985 555 888876665444   5699955 568899999999999999999976432      133


Q ss_pred             HHhcCCCccccCCHHHHHHHHHHhcCC
Q psy17691        634 LATLGCPELIARTHKEYQDIAIRLGTD  660 (673)
Q Consensus       634 l~~~gl~~~ia~~~~~yv~~a~~la~d  660 (673)
                      +.. |-..+...|.+++++...++..+
T Consensus       338 v~~-~~ng~~~~~~~~~a~ai~~~l~~  363 (462)
T PLN02846        338 FKQ-FPNCRTYDDGKGFVRATLKALAE  363 (462)
T ss_pred             eec-CCceEecCCHHHHHHHHHHHHcc
Confidence            333 54555668999999998887663

>TIGR02918 accessory Sec system glycosylation protein GtfA

Probab=98.88  E-value=1.8e-08  Score=112.43  Aligned_cols=144  Identities=10%  Similarity=-0.012  Sum_probs=107.2

Q ss_pred             EEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCC
Q psy17691        476 IVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFP  553 (673)
Q Consensus       476 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (673)
                      .++++++|+  .|-.+..++++.++.+..|+.+|.++|                                         .
T Consensus       320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G-----------------------------------------~  358 (500)
T TIGR02918       320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYG-----------------------------------------E  358 (500)
T ss_pred             eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEE-----------------------------------------C
Confidence            344555554  588999999999999999999999988                                         4


Q ss_pred             hhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceeecCCC-cchhhhHH
Q psy17691        554 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPGE-TLASRVAA  631 (673)
Q Consensus       554 ~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g~-~~~~r~~~  631 (673)
                      ++..+.+++.+++.|+. ++|.|.|..+..+   .|+.+|+++- |..++-|+|++|||++|+|||+-.-. ...     
T Consensus       359 G~~~~~l~~~i~~~~l~-~~V~f~G~~~~~~---~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~-----  429 (500)
T TIGR02918       359 GGEKQKLQKIINENQAQ-DYIHLKGHRNLSE---VYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNP-----  429 (500)
T ss_pred             chhHHHHHHHHHHcCCC-CeEEEcCCCCHHH---HHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCCCH-----
Confidence            55567888999999994 8999999875444   5668999966 55788899999999999999996521 111     


Q ss_pred             HHHHhcCCCccccC------C----HHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        632 SQLATLGCPELIAR------T----HKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       632 ~~l~~~gl~~~ia~------~----~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      .++ .-|-.+++..      +    .+++.+..++|.+ ++.+.+++...
T Consensus       430 eiI-~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a  477 (500)
T TIGR02918       430 TFI-EDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDIDAFHEYS  477 (500)
T ss_pred             HHc-cCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHHHHHHHHH
Confidence            122 2266666654      2    7788888888885 55677776543

Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.

>KOG0543|consensus

Probab=98.87  E-value=3.4e-08  Score=102.49  Aligned_cols=115  Identities=17%  Similarity=0.273  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPEF---------------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF  217 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~  217 (673)
                      ....|+.|++.|+|..|...|++++..-...               ..++.|++.++.++++|.+|+..+.++|+++|+|
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            3455777777777777777777776652211               3578889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK  267 (673)
Q Consensus       218 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~  267 (673)
                      ..+++..|.++..+|+++.|+..|+++++++|+|..+...|..+-.+..+
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE  340 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888888777655433

>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.87  E-value=1.6e-08  Score=106.28  Aligned_cols=148  Identities=16%  Similarity=0.186  Sum_probs=111.0

Q ss_pred             cEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        475 AIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       475 ~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      ..+|++++++  .|..+.++++|.++.+..|+.+|+++|                                         
T Consensus       178 ~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G-----------------------------------------  216 (348)
T cd03820         178 SKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVG-----------------------------------------  216 (348)
T ss_pred             CcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEe-----------------------------------------
Confidence            4445555543  688899999999999889999999987                                         


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASRVAA  631 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~  631 (673)
                      .+.....+.+.....|+. ++|.|.|.  .++....|..+|+++-|. ..+.|++++|||++|+|||+-.......    
T Consensus       217 ~~~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----  289 (348)
T cd03820         217 DGPEREALEALIKELGLE-DRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----  289 (348)
T ss_pred             CCCCHHHHHHHHHHcCCC-CeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----
Confidence            233345566777888884 89999998  578888999999997765 4567999999999999999865322211    


Q ss_pred             HHHHhcCCCccccC--CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        632 SQLATLGCPELIAR--THKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       632 ~~l~~~gl~~~ia~--~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                       .+..-|-..++.+  |.+++++...++.+|++.+++++...
T Consensus       290 -~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~  330 (348)
T cd03820         290 -EIIEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANA  330 (348)
T ss_pred             -hhhccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence             1222232334443  56999999999999999999888653

AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.

>PRK11906 transcriptional regulator; Provisional

Probab=98.87  E-value=8.6e-08  Score=101.92  Aligned_cols=116  Identities=13%  Similarity=0.111  Sum_probs=101.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEA  210 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  210 (673)
                      ...+|.++.++|++++|.++.++..+|.++...++++.|...|++|+.++|+.+.+|+..|.++...|+.++|++..+++
T Consensus       319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a  398 (458)
T PRK11906        319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS  398 (458)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q psy17691        211 IRIQPSFADAYSNMGNT-LKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       211 l~~~p~~~~~~~~lg~~-~~~~g~~~eA~~~~~~Al~  246 (673)
                      ++++|.-..+-...-.+ .+-....++|+..|-+-.+
T Consensus       399 lrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (458)
T PRK11906        399 LQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE  435 (458)
T ss_pred             hccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence            99999876554433333 4445678888888876444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.87  E-value=3e-08  Score=82.53  Aligned_cols=96  Identities=36%  Similarity=0.385  Sum_probs=89.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      ..+..+...|++++|+..++++++..|++..++..+|.++...+++++|+++++++++..|.+..++..+|.++...|++
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY   84 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence            34556677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC
Q psy17691        201 TDALLHYKEAIRIQPS  216 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~  216 (673)
                      ++|...++++++.+|+
T Consensus        85 ~~a~~~~~~~~~~~~~  100 (100)
T cd00189          85 EEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHccCCC
Confidence            9999999999988773

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.86  E-value=1.3e-06  Score=105.14  Aligned_cols=248  Identities=12%  Similarity=0.075  Sum_probs=185.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC----------------CcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQP----------------NFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~----------------~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      +++|...|+....  | +...|..+-..+...|+.                .+...+..+...+.+.|+.++|.. .++.
T Consensus       422 ~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~-vf~e  497 (1060)
T PLN03218        422 VKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE-VFHE  497 (1060)
T ss_pred             HHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH-HHHH
Confidence            5678887776543  4 466777777777777763                345566777788899999998875 3333


Q ss_pred             Hhh--cCCCch--hhhhhhhhhcCCCcccccccccCCCCchhHHHHH----HHhcCCCChhHHHHHHHHHHcCCHHHHHH
Q psy17691         66 TRE--LAPGNR--IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF----CYALSPDDGTTFSYIISVLLLIQVSEAEE  137 (673)
Q Consensus        66 ~~~--l~p~~~--~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~----~~~l~p~~~~~~~~~~~~~~~g~~~~A~~  137 (673)
                      ...  +.|+..  ..+...+...++.              .+++..+    .....|+....-..+..+.+.|++++|.+
T Consensus       498 M~~~Gv~PdvvTynaLI~gy~k~G~~--------------eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~  563 (1060)
T PLN03218        498 MVNAGVEANVHTFGALIDGCARAGQV--------------AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD  563 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHCcCH--------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            332  233332  2233334444432              2233333    22345664444456677778999999999


Q ss_pred             HHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        138 CYNTALRL----CPTHADSLNNLANIKREQGYIEEATRLYLKALEVF-PEFAAAHSNLASVLQQQGKLTDALLHYKEAIR  212 (673)
Q Consensus       138 ~~~~al~~----~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  212 (673)
                      .|++..+.    .| +...+..+...|.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|++.|++..+
T Consensus       564 lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        564 VLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             HHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999763    34 46788899999999999999999999999886 45678999999999999999999999999887


Q ss_pred             h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCc
Q psy17691        213 I--QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN-PGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       213 ~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~-p~~~~a~~~La~~~~~~g~~~  269 (673)
                      .  .|+ ...|..+...|.+.|++++|.+.++++.+.. +-+...+..|...|.+.|+++
T Consensus       643 ~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e  701 (1060)
T PLN03218        643 KGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK  701 (1060)
T ss_pred             cCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence            6  454 6789999999999999999999999998864 345788999999999999987

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.86  E-value=6.3e-09  Score=86.96  Aligned_cols=81  Identities=30%  Similarity=0.384  Sum_probs=44.3

Q ss_pred             cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691        163 QGYIEEATRLYLKALEVFPE--FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC  240 (673)
Q Consensus       163 ~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~  240 (673)
                      +|++++|+..++++++.+|.  +...++.+|.++++.|++++|+..+++ .+.++.+...+..+|.++.++|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            45555555555555555553  234455555555556666666555555 555555555555556666666666666655


Q ss_pred             HHHH
Q psy17691        241 YSRA  244 (673)
Q Consensus       241 ~~~A  244 (673)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            5543

>PRK15331 chaperone protein SicA; Provisional

Probab=98.85  E-value=3.7e-08  Score=90.85  Aligned_cols=113  Identities=17%  Similarity=0.037  Sum_probs=98.8

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691        141 TALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA  220 (673)
Q Consensus       141 ~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  220 (673)
                      .+..+.++..+..+..|.-++.+|++++|...|+-....+|.++..|..||.++..+++|++|+..|..+..++++++..
T Consensus        28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence            33444556677888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691        221 YSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA  254 (673)
Q Consensus       221 ~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a  254 (673)
                      .+..|.||..+|+.++|+.+|+.+++ .|.+...
T Consensus       108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l  140 (165)
T PRK15331        108 VFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL  140 (165)
T ss_pred             cchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence            99999999999999999999999988 4554444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.85  E-value=6.5e-08  Score=92.64  Aligned_cols=115  Identities=28%  Similarity=0.313  Sum_probs=93.7

Q ss_pred             ChhHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17691        116 DGTTFSYII-SVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA  191 (673)
Q Consensus       116 ~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  191 (673)
                      ....+...+ .+...|++++|+.+|+++++..|+.   ..++.++|.++...|++++|+.+++++++.+|++...+.++|
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            334444444 4556899999999999999987764   568999999999999999999999999999999999999999


Q ss_pred             HHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        192 SVLQQQGK--------------LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD  233 (673)
Q Consensus       192 ~~~~~~g~--------------~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  233 (673)
                      .++...|+              +++|+++++++++.+|++   +...+..+...|+
T Consensus       114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            99999887              677888888888888876   4445555544443

>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.85  E-value=2.3e-08  Score=105.99  Aligned_cols=154  Identities=19%  Similarity=0.181  Sum_probs=115.8

Q ss_pred             cccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691        465 SRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV  542 (673)
Q Consensus       465 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (673)
                      .|+.+|++.+.++|+.+++.  .|..+.+++++.++.+..|+.+|+++|.                              
T Consensus       183 ~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~------------------------------  232 (365)
T cd03807         183 LREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGD------------------------------  232 (365)
T ss_pred             HHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecC------------------------------
Confidence            45678898888888888876  4888899999999998899999999871                              


Q ss_pred             CchhhhhccCChhhhhhHHHHHH-HcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeec
Q psy17691        543 PNSILWLLKFPAVGEANIQATAQ-ALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTL  620 (673)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~  620 (673)
                                 +.....++.... ..|+ .++|.|.|..  ++....|..+|+++-|. ..+.|++.+|||++|+|||+-
T Consensus       233 -----------~~~~~~~~~~~~~~~~~-~~~v~~~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~  298 (365)
T cd03807         233 -----------GPDRANLELLALKELGL-EDKVILLGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVAT  298 (365)
T ss_pred             -----------CcchhHHHHHHHHhcCC-CceEEEcccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEc
Confidence                       222233444444 7787 4899999853  56778899999998765 457799999999999999996


Q ss_pred             CCCcchhhhHHHHHHhcCCCccc--cCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        621 PGETLASRVAASQLATLGCPELI--ARTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       621 ~g~~~~~r~~~~~l~~~gl~~~i--a~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      .......     ++..   ..++  ..|.+++++....+.+|++.+.+++..
T Consensus       299 ~~~~~~e-----~~~~---~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~  342 (365)
T cd03807         299 DVGDNAE-----LVGD---TGFLVPPGDPEALAEAIEALLADPALRQALGEA  342 (365)
T ss_pred             CCCChHH-----Hhhc---CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHH
Confidence            5543322     3333   2233  358999999999999999888776654

WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.

>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.85  E-value=2.6e-08  Score=106.30  Aligned_cols=161  Identities=16%  Similarity=0.115  Sum_probs=118.4

Q ss_pred             cccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691        465 SRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV  542 (673)
Q Consensus       465 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (673)
                      .|++++++++.++++.++++  .|..+.+++++..+.+..|+.+++++|..   .                         
T Consensus       175 ~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~---~-------------------------  226 (355)
T cd03819         175 LAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDA---Q-------------------------  226 (355)
T ss_pred             HHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECC---c-------------------------
Confidence            45667788888888888876  58899999999999888889999998811   0                         


Q ss_pred             CchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC--CCCCcchhhhhhhcCCceeec
Q psy17691        543 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP--LCNGHTTSMDVLWTGTPVVTL  620 (673)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~--p~~g~~t~~eal~~GvPvvt~  620 (673)
                               -.....+.+.+.+.+.|+. ++|.|.|.  .++....|..+|+++-|.  +++.|+|.+|||++|+|||+-
T Consensus       227 ---------~~~~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~  294 (355)
T cd03819         227 ---------GRRFYYAELLELIKRLGLQ-DRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIAS  294 (355)
T ss_pred             ---------ccchHHHHHHHHHHHcCCc-ceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEc
Confidence                     0011234455677888884 89999998  567888889999998765  667899999999999999987


Q ss_pred             CCCcchhhhHHHHHHhcCCCccc--cCCHHHHHHHHH-HhcCCHHHHHHHHhhh
Q psy17691        621 PGETLASRVAASQLATLGCPELI--ARTHKEYQDIAI-RLGTDRDYCEKALLYH  671 (673)
Q Consensus       621 ~g~~~~~r~~~~~l~~~gl~~~i--a~~~~~yv~~a~-~la~d~~~~~~~~~~~  671 (673)
                      .......     ++.. |...++  ..|.+++++... .+..|++.+.++++..
T Consensus       295 ~~~~~~e-----~i~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a  342 (355)
T cd03819         295 DHGGARE-----TVRP-GETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKA  342 (355)
T ss_pred             CCCCcHH-----HHhC-CCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence            6543322     3333 223333  257888888774 4556899999888764

WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=9.1e-08  Score=96.23  Aligned_cols=110  Identities=25%  Similarity=0.250  Sum_probs=95.0

Q ss_pred             HHhcCCCChhHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCH
Q psy17691        109 CYALSPDDGTTFSYII-SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG---YIEEATRLYLKALEVFPEFA  184 (673)
Q Consensus       109 ~~~l~p~~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g---~~~eA~~~~~~al~~~p~~~  184 (673)
                      .+..+|++.+-|..++ .++.+|+++.|...|.+|+++.|++++.+..+|.++..+.   ...++...++++++.+|.+.
T Consensus       148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i  227 (287)
T COG4235         148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI  227 (287)
T ss_pred             HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH
Confidence            3455677777664443 4445779999999999999999999999999999987653   57789999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA  218 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  218 (673)
                      .+.+.||..++++|+|.+|+..++..++..|.+.
T Consensus       228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999999999988764

>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.84  E-value=2.8e-08  Score=106.27  Aligned_cols=155  Identities=15%  Similarity=0.095  Sum_probs=114.5

Q ss_pred             ccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCch
Q psy17691        468 QYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNS  545 (673)
Q Consensus       468 ~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (673)
                      ..+.+.+.++++++++.  .|..+.+++++.++.+. |+.+|+++|                                  
T Consensus       213 ~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G----------------------------------  257 (394)
T cd03794         213 KELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVG----------------------------------  257 (394)
T ss_pred             hccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeC----------------------------------
Confidence            34455667777777765  58888999999998887 899999987                                  


Q ss_pred             hhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCC------CcchhhhhhhcCCceee
Q psy17691        546 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN------GHTTSMDVLWTGTPVVT  619 (673)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~------g~~t~~eal~~GvPvvt  619 (673)
                             .+.....+.+.....++  ++|.|.|..+.++....|..+|+++-|....      .+++++|||++|+|||+
T Consensus       258 -------~~~~~~~~~~~~~~~~~--~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~  328 (394)
T cd03794         258 -------DGPEKEELKELAKALGL--DNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLA  328 (394)
T ss_pred             -------CcccHHHHHHHHHHcCC--CcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEE
Confidence                   23334456565556665  6799999999999999999999998765433      25668999999999999


Q ss_pred             cCCCcchhhhHHHHHHhcCCCcccc-CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        620 LPGETLASRVAASQLATLGCPELIA-RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       620 ~~g~~~~~r~~~~~l~~~gl~~~ia-~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      -.......     ++..-+..-++. .|.++.++...++..|++.+.+++...
T Consensus       329 ~~~~~~~~-----~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~  376 (394)
T cd03794         329 SVDGESAE-----LVEEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENG  376 (394)
T ss_pred             ecCCCchh-----hhccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            76654433     222212222332 389999999999999999999887654

wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.84  E-value=1e-08  Score=81.07  Aligned_cols=62  Identities=29%  Similarity=0.518  Sum_probs=31.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       190 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~  251 (673)
                      +|..++..|++++|++.|+++++.+|+++.++..+|.++..+|++++|+.+|+++++.+|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            44445555555555555555555555555555555555555555555555555555555543

>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.84  E-value=3.5e-08  Score=108.03  Aligned_cols=150  Identities=13%  Similarity=0.085  Sum_probs=111.8

Q ss_pred             CcEEEecCCcc--cccChhhHHHHHHHHhcccCeeE--EeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhh
Q psy17691        474 DAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSIL--WLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWL  549 (673)
Q Consensus       474 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (673)
                      +.++|++++++  .|-.+.+++++.++.+..|+..+  +++|                                      
T Consensus       229 ~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG--------------------------------------  270 (407)
T cd04946         229 DTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIG--------------------------------------  270 (407)
T ss_pred             CCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEe--------------------------------------
Confidence            45666777755  48889999999999998886544  4455                                      


Q ss_pred             ccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhccc--ccEEec-CCCCCCcchhhhhhhcCCceeecCCCcch
Q psy17691        550 LKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPGETLA  626 (673)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~--~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g~~~~  626 (673)
                         .+...+.+++.++..+. .++|.|+|.++.++....|..  +|+++- |..++-|++++|||++|+|||+-.-....
T Consensus       271 ---~g~~~~~l~~~~~~~~~-~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~  346 (407)
T cd04946         271 ---GGPLEDTLKELAESKPE-NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTP  346 (407)
T ss_pred             ---CchHHHHHHHHHHhcCC-CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcH
Confidence               34455678887777777 489999999999999888865  788865 45678899999999999999985432222


Q ss_pred             hhhHHHHHHhcCCCc-ccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        627 SRVAASQLATLGCPE-LIA--RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       627 ~r~~~~~l~~~gl~~-~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                           .++.. |-.+ ++.  .|.+++++...++.+|++.+.+|+...
T Consensus       347 -----e~i~~-~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~a  388 (407)
T cd04946         347 -----EIVDN-GGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKA  388 (407)
T ss_pred             -----HHhcC-CCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence                 12332 3233 333  378999999999999999999887654

AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.

>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated

Probab=98.83  E-value=2e-08  Score=109.68  Aligned_cols=142  Identities=13%  Similarity=0.099  Sum_probs=98.8

Q ss_pred             CcEEEecCCcc--cccChhhH----HHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691        474 DAIVYCNFNQL--YKIDPSTL----QMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL  547 (673)
Q Consensus       474 ~~~~~~~~~~~--~K~~~~~~----~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (673)
                      +..+++.++++  .|..+..+    ++|..+.+..|+.+|+++|                                    
T Consensus       223 ~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG------------------------------------  266 (397)
T TIGR03087       223 GKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVG------------------------------------  266 (397)
T ss_pred             CCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEEC------------------------------------
Confidence            34455555654  46555554    6788888889999999988                                    


Q ss_pred             hhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC--CCCcchhhhhhhcCCceeecCCCcc
Q psy17691        548 WLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL--CNGHTTSMDVLWTGTPVVTLPGETL  625 (673)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p--~~g~~t~~eal~~GvPvvt~~g~~~  625 (673)
                           .++. ..    +++.+. .++|.|+|.++  +....|..+||++-|..  ++-+++++|||+||+|||+-...  
T Consensus       267 -----~g~~-~~----~~~l~~-~~~V~~~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~--  331 (397)
T TIGR03087       267 -----AKPS-PA----VRALAA-LPGVTVTGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEA--  331 (397)
T ss_pred             -----CCCh-HH----HHHhcc-CCCeEEeeecC--CHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcc--
Confidence                 2222 12    233444 36799999887  56678889999987753  34477899999999999996531  


Q ss_pred             hhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        626 ASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       626 ~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                          +..+...-|..-+++.|.+++++...+|.+|++.+++++..
T Consensus       332 ----~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~  372 (397)
T TIGR03087       332 ----AEGIDALPGAELLVAADPADFAAAILALLANPAEREELGQA  372 (397)
T ss_pred             ----cccccccCCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence                01111112333356789999999999999999988887654

Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.83  E-value=1.4e-08  Score=80.26  Aligned_cols=65  Identities=31%  Similarity=0.400  Sum_probs=52.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        154 NNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA  218 (673)
Q Consensus       154 ~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  218 (673)
                      +.+|..+.+.|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35778888888888888888888888888888888888888888888888888888888888764

>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.83  E-value=2.5e-08  Score=106.36  Aligned_cols=154  Identities=21%  Similarity=0.172  Sum_probs=112.9

Q ss_pred             CCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691        470 GLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL  547 (673)
Q Consensus       470 ~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (673)
                      +.+.+.+++++++++  .|..+.+++++.++.++.|+.+|+++|..                                  
T Consensus       180 ~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~----------------------------------  225 (366)
T cd03822         180 GGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGET----------------------------------  225 (366)
T ss_pred             cCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccC----------------------------------
Confidence            344556666666655  48888999999999999999999998810                                  


Q ss_pred             hhccCChhhhhhHH----HHHHHcCCCCCeEEeccC-cChHHHHHhcccccEEecCC-CC--CCcchhhhhhhcCCceee
Q psy17691        548 WLLKFPAVGEANIQ----ATAQALGLDQHRILFSNV-AAKEEHVRRGQLADVCLDTP-LC--NGHTTSMDVLWTGTPVVT  619 (673)
Q Consensus       548 ~~~~~~~~~~~~~~----~~~~~~g~~~~rv~~~~~-~~~~~~~~~~~~~Di~Ld~~-p~--~g~~t~~eal~~GvPvvt  619 (673)
                            ........    +.+.+.|+. ++|+|.|. ++.++....|+.+|+++-|. ..  +.|.+.+|||++|+|||+
T Consensus       226 ------~~~~~~~~~~~~~~i~~~~~~-~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~  298 (366)
T cd03822         226 ------HPDLERYRGEAYALAERLGLA-DRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVIS  298 (366)
T ss_pred             ------ccchhhhhhhhHhHHHhcCCC-CcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEe
Confidence                  00000111    346788984 89999987 99999999999999998776 44  568999999999999998


Q ss_pred             cCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        620 LPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       620 ~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      -+... ..     .+.. +-..++.  .|.+++++....+.+|++.+.+++...
T Consensus       299 ~~~~~-~~-----~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~  345 (366)
T cd03822         299 TPVGH-AE-----EVLD-GGTGLLVPPGDPAALAEAIRRLLADPELAQALRARA  345 (366)
T ss_pred             cCCCC-hh-----eeee-CCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            65432 11     1211 2233443  468999999999999999988887653

ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.

>KOG1128|consensus

Probab=98.83  E-value=3.5e-08  Score=108.19  Aligned_cols=119  Identities=18%  Similarity=0.243  Sum_probs=70.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK  208 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  208 (673)
                      .++|+++..+++..++++|-....|+.+|.+..+.++++.|.++|.+.+.++|++.++|+|++..|...|+-.+|...++
T Consensus       498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~  577 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK  577 (777)
T ss_pred             chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence            35556666666666666665556666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       209 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      ++++.+-.+...|-|.-.+..+.|.+++|++.|.+.+.+
T Consensus       578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            666655555555555555555666666666655555544

>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed

Probab=98.82  E-value=3.7e-08  Score=108.54  Aligned_cols=160  Identities=18%  Similarity=0.155  Sum_probs=109.1

Q ss_pred             cccccCCCCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCc
Q psy17691        465 SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPN  544 (673)
Q Consensus       465 ~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (673)
                      .|+.++ +.. .++.+.++..|-...++++|.++.+..|+.+|++++                                 
T Consensus       225 ~r~~~~-~~~-~vil~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG---------------------------------  269 (425)
T PRK05749        225 LRRQLA-PNR-PVWIAASTHEGEEELVLDAHRALLKQFPNLLLILVP---------------------------------  269 (425)
T ss_pred             HHHHhc-CCC-cEEEEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcC---------------------------------
Confidence            455566 333 333334455666667799999999889999999987                                 


Q ss_pred             hhhhhccCChhhh-hhHHHHHHHcCCCCCeEEeccCc------------ChHHHHHhcccccEE-e-cCCCCCCcchhhh
Q psy17691        545 SILWLLKFPAVGE-ANIQATAQALGLDQHRILFSNVA------------AKEEHVRRGQLADVC-L-DTPLCNGHTTSMD  609 (673)
Q Consensus       545 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~~rv~~~~~~------------~~~~~~~~~~~~Di~-L-d~~p~~g~~t~~e  609 (673)
                              .++.+ +.+++.+++.|+.  .+.|.+..            +..+....|+.+||+ + -|+..+||++.+|
T Consensus       270 --------~g~~r~~~l~~~~~~~gl~--~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lE  339 (425)
T PRK05749        270 --------RHPERFKEVEELLKKAGLS--YVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLE  339 (425)
T ss_pred             --------CChhhHHHHHHHHHhCCCc--EEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHH
Confidence                    34443 5788888999984  23333311            236888999999994 5 4666689999999


Q ss_pred             hhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        610 VLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       610 al~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ||++|+|||+-+...-.+-+ ...+...|.- +...|.+++.+....|.+|++.++++....
T Consensus       340 Ama~G~PVI~g~~~~~~~e~-~~~~~~~g~~-~~~~d~~~La~~l~~ll~~~~~~~~m~~~a  399 (425)
T PRK05749        340 PAAFGVPVISGPHTFNFKEI-FERLLQAGAA-IQVEDAEDLAKAVTYLLTDPDARQAYGEAG  399 (425)
T ss_pred             HHHhCCCEEECCCccCHHHH-HHHHHHCCCe-EEECCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999984321111111 1222233321 224789999999999999999999887643

>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family

Probab=98.82  E-value=4.7e-08  Score=106.10  Aligned_cols=161  Identities=15%  Similarity=0.115  Sum_probs=115.3

Q ss_pred             ccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA  541 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (673)
                      ..|.++|++.+.++|++++++.  |-.+.+++++.++.   ++.++++++..   .                        
T Consensus       190 ~~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g---~------------------------  239 (388)
T TIGR02149       190 VVLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGA---P------------------------  239 (388)
T ss_pred             HHHHHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCC---C------------------------
Confidence            4567789998888888888765  78888999988764   46677776510   0                        


Q ss_pred             cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEec-cCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceee
Q psy17691        542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVT  619 (673)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~-~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt  619 (673)
                                ......+.+++.+...+...++++|. +..+.++....|..+|+++-|. ..+.|++.+|||++|+|||+
T Consensus       240 ----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~  309 (388)
T TIGR02149       240 ----------DTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVA  309 (388)
T ss_pred             ----------CcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEE
Confidence                      01112456677777777755667765 6789999999999999998765 56779999999999999998


Q ss_pred             cCCCcchhhhHHHHHHhcCCCcccc--CCH------HHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        620 LPGETLASRVAASQLATLGCPELIA--RTH------KEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       620 ~~g~~~~~r~~~~~l~~~gl~~~ia--~~~------~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      -.......     ++.. |...++.  .+.      ++..+...++.+|++.+++++..
T Consensus       310 s~~~~~~e-----~i~~-~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~  362 (388)
T TIGR02149       310 SATGGIPE-----VVVD-GETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIA  362 (388)
T ss_pred             eCCCCHHH-----HhhC-CCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            66543222     2222 3334443  244      78999999999999998887654

This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.

>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A

Probab=98.82  E-value=3.3e-09  Score=96.98  Aligned_cols=129  Identities=16%  Similarity=0.165  Sum_probs=85.8

Q ss_pred             cEEEecCCccc--ccChhhHH-HHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        475 AIVYCNFNQLY--KIDPSTLQ-MWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       475 ~~~~~~~~~~~--K~~~~~~~-~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      -++||++++..  |-...+++ +|.++.++.|+..|.++|.                                       
T Consensus         2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~---------------------------------------   42 (135)
T PF13692_consen    2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGN---------------------------------------   42 (135)
T ss_dssp             -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECE---------------------------------------
T ss_pred             cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeC---------------------------------------
Confidence            46788888665  77778899 9999999999999999881                                       


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCC--CCcchhhhhhhcCCceeecCCCcchhhh
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC--NGHTTSMDVLWTGTPVVTLPGETLASRV  629 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~--~g~~t~~eal~~GvPvvt~~g~~~~~r~  629 (673)
                        ++.  .+++.      ..++|.|+|.+  +++...++.+||++.|+..  +-+++++|+|++|+|||+... .+.   
T Consensus        43 --~~~--~l~~~------~~~~v~~~g~~--~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~---  106 (135)
T PF13692_consen   43 --GPD--ELKRL------RRPNVRFHGFV--EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAE---  106 (135)
T ss_dssp             --SS---HHCCH------HHCTEEEE-S---HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCH---
T ss_pred             --CHH--HHHHh------cCCCEEEcCCH--HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chh---
Confidence              111  12222      24689999998  5899999999999998854  347899999999999999665 111   


Q ss_pred             HHHHHHhcCCCccccCCHHHHHHHHHHhcCC
Q psy17691        630 AASQLATLGCPELIARTHKEYQDIAIRLGTD  660 (673)
Q Consensus       630 ~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d  660 (673)
                        .+....|..-++..|.+++++...+|..|
T Consensus       107 --~~~~~~~~~~~~~~~~~~l~~~i~~l~~d  135 (135)
T PF13692_consen  107 --GIVEEDGCGVLVANDPEELAEAIERLLND  135 (135)
T ss_dssp             --CHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred             --hheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence              13333455557788999999999998765

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.82  E-value=1.2e-08  Score=85.29  Aligned_cols=81  Identities=33%  Similarity=0.346  Sum_probs=73.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPT--HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH  206 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~--~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~  206 (673)
                      .|++++|+..++++++.+|.  +...++.+|.+|++.|++++|+..+++ .+.++.+...++.+|.++.++|++++|++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57999999999999999995  466788899999999999999999999 889999999999999999999999999999


Q ss_pred             HHHH
Q psy17691        207 YKEA  210 (673)
Q Consensus       207 ~~~a  210 (673)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.81  E-value=6.7e-07  Score=99.26  Aligned_cols=85  Identities=20%  Similarity=0.186  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      .+++.+|..|...|++++|+++.+++|+..|..++.|...|.+|...|++.+|.++++.|-++|..+..+....+..+.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCc
Q psy17691        265 SGKRG  269 (673)
Q Consensus       265 ~g~~~  269 (673)
                      .|+.+
T Consensus       275 a~~~e  279 (517)
T PF12569_consen  275 AGRIE  279 (517)
T ss_pred             CCCHH
Confidence            99987

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli

Probab=98.81  E-value=3.3e-08  Score=105.66  Aligned_cols=155  Identities=14%  Similarity=0.108  Sum_probs=116.4

Q ss_pred             ccccccCCCCCcEEEecCCc--ccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA  541 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (673)
                      ..|++++++.+.++|.++++  ..|..+.+++++.++.+..|+.+|+++|                              
T Consensus       177 ~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G------------------------------  226 (360)
T cd04951         177 KIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAG------------------------------  226 (360)
T ss_pred             HHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEc------------------------------
Confidence            35677888888877777775  4589999999999999999999999987                              


Q ss_pred             cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeec
Q psy17691        542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTL  620 (673)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~  620 (673)
                                 .+...+.+++.+++.|+. ++|.|.|..  ++....|..+|+++-|. ..+.|.+.+|||++|+|||+-
T Consensus       227 -----------~g~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~  292 (360)
T cd04951         227 -----------DGPLRATLERLIKALGLS-NRVKLLGLR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVAT  292 (360)
T ss_pred             -----------CCCcHHHHHHHHHhcCCC-CcEEEeccc--ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEe
Confidence                       344456788888888984 899999964  56677888999997654 556699999999999999986


Q ss_pred             CCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhc-CCHHHHHHHH
Q psy17691        621 PGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLG-TDRDYCEKAL  668 (673)
Q Consensus       621 ~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la-~d~~~~~~~~  668 (673)
                      .......     ++...|. -+...|.+++++...++. .+++.+..++
T Consensus       293 ~~~~~~e-----~i~~~g~-~~~~~~~~~~~~~i~~ll~~~~~~~~~~~  335 (360)
T cd04951         293 DAGGVRE-----VVGDSGL-IVPISDPEALANKIDEILKMSGEERDIIG  335 (360)
T ss_pred             cCCChhh-----EecCCce-EeCCCCHHHHHHHHHHHHhCCHHHHHHHH
Confidence            5433322     2222221 123478999999999988 5666665544

In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have

>KOG0543|consensus

Probab=98.80  E-value=9e-08  Score=99.44  Aligned_cols=129  Identities=16%  Similarity=0.106  Sum_probs=113.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPT----H-----------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA  185 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~----~-----------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~  185 (673)
                      ..+..+++.|+|..|...|++++..-..    +           ..++.|++.++.++++|.+|+.+..++|.++|+|..
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K  292 (397)
T KOG0543|consen  213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK  292 (397)
T ss_pred             HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence            4556788899999999999999886331    1           237999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA-LQCYSRAIQINP  249 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA-~~~~~~Al~l~p  249 (673)
                      +++..|.++..+|+|+.|+..|+++++++|+|..+...+..+-.+..++.+. .+.|.+++...+
T Consensus       293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999998887776655 778888876544

>PRK11906 transcriptional regulator; Provisional

Probab=98.80  E-value=1.2e-07  Score=100.76  Aligned_cols=124  Identities=12%  Similarity=0.093  Sum_probs=115.8

Q ss_pred             CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691        131 QVSEAEECYNTAL---RLCPTHADSLNNLANIKREQ---------GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG  198 (673)
Q Consensus       131 ~~~~A~~~~~~al---~~~p~~~~a~~~Lg~~~~~~---------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  198 (673)
                      ..+.|+.+|.+++   +++|+.+.++..++.++...         .+..+|.+..++|++++|.++.++..+|.++...+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            5788999999999   99999999999999998754         35678899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691        199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA  254 (673)
Q Consensus       199 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a  254 (673)
                      +++.|+..|++|+.++|+.+.+|+..|.+....|+.++|.+.+++|++++|.-..+
T Consensus       353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence            99999999999999999999999999999999999999999999999999976544

>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.80  E-value=4.9e-08  Score=104.18  Aligned_cols=150  Identities=20%  Similarity=0.125  Sum_probs=111.1

Q ss_pred             CCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhh
Q psy17691        471 LPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILW  548 (673)
Q Consensus       471 l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (673)
                      .+.+.+++++++++  .|..+.+++++.++.    +.+++++|                                     
T Consensus       187 ~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G-------------------------------------  225 (357)
T cd03795         187 RAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVG-------------------------------------  225 (357)
T ss_pred             CCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEe-------------------------------------
Confidence            34455666666654  577777777776654    78888887                                     


Q ss_pred             hccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC---CCCCcchhhhhhhcCCceeecCCCcc
Q psy17691        549 LLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP---LCNGHTTSMDVLWTGTPVVTLPGETL  625 (673)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~---p~~g~~t~~eal~~GvPvvt~~g~~~  625 (673)
                          .+.....+++.....+.. ++|.|.|.++.++....|..||+++-|.   .++.|++++|||++|+|||+-.....
T Consensus       226 ----~g~~~~~~~~~~~~~~~~-~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~  300 (357)
T cd03795         226 ----EGPLEAELEALAAALGLL-DRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTG  300 (357)
T ss_pred             ----CChhHHHHHHHHHhcCCc-ceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCc
Confidence                333445677777778874 8999999999999999999999997664   35779999999999999999654333


Q ss_pred             hhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        626 ASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       626 ~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ..     .+..-|-..++.  .|.+++++....+.+|++.+++++...
T Consensus       301 ~~-----~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~  343 (357)
T cd03795         301 GS-----YVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAA  343 (357)
T ss_pred             hh-----HHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence            32     122123334444  579999999999999999999887654

Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.79  E-value=3.8e-07  Score=106.98  Aligned_cols=248  Identities=10%  Similarity=0.071  Sum_probs=185.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcH----------------HHHHHHHHHHHHcCChhhhcCChhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFP----------------DAYCNLANALKEKGQINVLHKPPYK   64 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a----------------~a~~~la~~l~~~g~~~~A~~~~~~   64 (673)
                      ++++|.+.|++.   .+.+...|..+...|.+.|+.+.+                ..+..+..++...|++++|.. .+.
T Consensus       274 ~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~-i~~  349 (697)
T PLN03081        274 DIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ-AHA  349 (697)
T ss_pred             CHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH-HHH
Confidence            468899998865   456788999999999999974433                345566677778888887764 233


Q ss_pred             HHhhc--CCCc--hhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHH-HHHHHHHHcCCHHHHHHHH
Q psy17691         65 YTREL--APGN--RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF-SYIISVLLLIQVSEAEECY  139 (673)
Q Consensus        65 ~~~~l--~p~~--~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~  139 (673)
                      ...+.  .++.  ...+...|...|+.+              ++...+.....+ +...| ..+..+.+.|+.++|++.|
T Consensus       350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~--------------~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf  414 (697)
T PLN03081        350 GLIRTGFPLDIVANTALVDLYSKWGRME--------------DARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMF  414 (697)
T ss_pred             HHHHhCCCCCeeehHHHHHHHHHCCCHH--------------HHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHH
Confidence            33322  2322  234455555555433              233333333344 34455 4456677799999999999


Q ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        140 NTALRLC-PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE--FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS  216 (673)
Q Consensus       140 ~~al~~~-p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  216 (673)
                      ++..+.. .-+...+..+...+...|+.++|.++|+...+...-  +...|..+...|.+.|++++|.+.+++. ...| 
T Consensus       415 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-  492 (697)
T PLN03081        415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-  492 (697)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-
Confidence            9998753 224667888889999999999999999999875332  3457888999999999999999998764 2334 


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       217 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +...|..+...+...|+++.|...+++.+++.|++...|..|..+|.+.|+++
T Consensus       493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~  545 (697)
T PLN03081        493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA  545 (697)
T ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence            46789999999999999999999999999999999999999999999999997

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.79  E-value=2.3e-07  Score=94.53  Aligned_cols=106  Identities=22%  Similarity=0.296  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q psy17691        150 ADSLNNLANIK-REQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF---ADAYS  222 (673)
Q Consensus       150 ~~a~~~Lg~~~-~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~  222 (673)
                      ....+..|..+ .+.|+|++|+..|++.++.+|++   +.+++.+|.+|+..|++++|+..|+++++..|++   +++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            35566666655 55678888888888888888876   4678888888888888888888888888776663   66778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691        223 NMGNTLKEMQDIQGALQCYSRAIQINPGFADAH  255 (673)
Q Consensus       223 ~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~  255 (673)
                      .+|.++..+|++++|+..|+++++..|+...+.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            888888888888888888888888888776543

>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.77  E-value=4.1e-08  Score=104.52  Aligned_cols=149  Identities=17%  Similarity=0.133  Sum_probs=111.3

Q ss_pred             cccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCc
Q psy17691        467 QQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPN  544 (673)
Q Consensus       467 ~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (673)
                      ..++ +.+.++|+.++++  .|..+.+++++.++..+ |+.+|+++|                                 
T Consensus       190 ~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G---------------------------------  234 (364)
T cd03814         190 ARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVG---------------------------------  234 (364)
T ss_pred             HHhC-CCCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEe---------------------------------
Confidence            3344 4445566666654  58888999999999888 899999988                                 


Q ss_pred             hhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCC
Q psy17691        545 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGE  623 (673)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~  623 (673)
                              .+.....++      +. .++|.|.|..+.++....|..+|+++.|. ..+.|+|.+|||++|+|||+-...
T Consensus       235 --------~~~~~~~~~------~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~  299 (364)
T cd03814         235 --------DGPARARLE------AR-YPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAG  299 (364)
T ss_pred             --------CCchHHHHh------cc-CCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCC
Confidence                    122222222      33 47899999999999999999999998765 667799999999999999998876


Q ss_pred             cchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        624 TLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       624 ~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      .....     +.. +-..++.  .+.+++++...++..|++.+.++....
T Consensus       300 ~~~~~-----i~~-~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~  343 (364)
T cd03814         300 GPADI-----VTD-GENGLLVEPGDAEAFAAALAALLADPELRRRMAARA  343 (364)
T ss_pred             Cchhh-----hcC-CcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            55442     222 2233443  467789999999999999998887654

Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.77  E-value=3.7e-08  Score=101.98  Aligned_cols=148  Identities=14%  Similarity=0.037  Sum_probs=121.8

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHH
Q psy17691        127 LLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG--KLTDAL  204 (673)
Q Consensus       127 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~eA~  204 (673)
                      ...|++++|++.+.+.     ++.++....-.+|...++++.|.+.++..-+.+.+..-+....+++....|  ++.+|.
T Consensus       113 ~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~  187 (290)
T PF04733_consen  113 FHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAF  187 (290)
T ss_dssp             CCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             HHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence            3478999999888764     678888888999999999999999999999988887666666666766666  599999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc----------cccCC
Q psy17691        205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG----------FFIRT  274 (673)
Q Consensus       205 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~----------l~l~p  274 (673)
                      ..|++..+..+.++..++.++.++..+|++++|.+.++++++.+|+++++..|++.+...+|+..          ...+|
T Consensus       188 y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p  267 (290)
T PF04733_consen  188 YIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP  267 (290)
T ss_dssp             HHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence            99999887778889999999999999999999999999999999999999999999999999873          23567


Q ss_pred             CCHHH
Q psy17691        275 DLNSA  279 (673)
Q Consensus       275 ~~~~a  279 (673)
                      +++..
T Consensus       268 ~h~~~  272 (290)
T PF04733_consen  268 NHPLV  272 (290)
T ss_dssp             TSHHH
T ss_pred             CChHH
Confidence            76653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN02316 synthase/transferase

Probab=98.76  E-value=6.1e-08  Score=113.91  Aligned_cols=119  Identities=18%  Similarity=0.044  Sum_probs=88.8

Q ss_pred             ccccccCCCC-CcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhh
Q psy17691        464 TSRQQYGLPE-DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLK  540 (673)
Q Consensus       464 ~~r~~~~l~~-~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (673)
                      ..|+++||+. +.+++++++|+.  |-.+.+++++.++++  ++.+|+|+|..   .                       
T Consensus       828 ~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~G---p-----------------------  879 (1036)
T PLN02316        828 ALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSA---P-----------------------  879 (1036)
T ss_pred             HHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCC---C-----------------------
Confidence            4678899994 678999999886  888899999999986  47899988710   0                       


Q ss_pred             ccCchhhhhccCChhhhhhHHHHHHHcCCC-CCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCc-e
Q psy17691        541 AVPNSILWLLKFPAVGEANIQATAQALGLD-QHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTP-V  617 (673)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvP-v  617 (673)
                                  ....+..+++...++|+. ++||.|.+..+...-..+|..+||||= |..++-|.|.+|||++|+| |
T Consensus       880 ------------d~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppV  947 (1036)
T PLN02316        880 ------------DPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPV  947 (1036)
T ss_pred             ------------CHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeE
Confidence                        011256778888888875 579999876543222368999999965 5577889999999999975 5


Q ss_pred             eecCC
Q psy17691        618 VTLPG  622 (673)
Q Consensus       618 vt~~g  622 (673)
                      |+-.|
T Consensus       948 vs~vG  952 (1036)
T PLN02316        948 VRKTG  952 (1036)
T ss_pred             EEcCC
Confidence            55444

>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain

Probab=98.76  E-value=5.9e-08  Score=107.38  Aligned_cols=165  Identities=10%  Similarity=0.027  Sum_probs=108.8

Q ss_pred             ccCCCCCcEEEecCCccc--ccChhhHHHHHHH--HhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccC
Q psy17691        468 QYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNV--LKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVP  543 (673)
Q Consensus       468 ~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~i--l~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (673)
                      .++++.+..++++++|+.  |..+.++++++++  ++..++..+ ++|.   |+.       +..+...           
T Consensus       241 ~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~l-i~G~---g~~-------~~~l~~~-----------  298 (439)
T TIGR02472       241 PFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLVL-VLGC---RDD-------IRKMESQ-----------  298 (439)
T ss_pred             hhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEEE-EeCC---ccc-------cccccHH-----------
Confidence            456666666777777664  8899999999864  333344332 3441   000       0000000           


Q ss_pred             chhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccc----cEEec-CCCCCCcchhhhhhhcCCcee
Q psy17691        544 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----DVCLD-TPLCNGHTTSMDVLWTGTPVV  618 (673)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~----Di~Ld-~~p~~g~~t~~eal~~GvPvv  618 (673)
                               .....+.+.+...+.|+. ++|+|.|.++.++....|+.+    |+|+- |..++-|+|.+|||++|+|||
T Consensus       299 ---------~~~~~~~~~~~~~~~~l~-~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV  368 (439)
T TIGR02472       299 ---------QREVLQKVLLLIDRYDLY-GKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIV  368 (439)
T ss_pred             ---------HHHHHHHHHHHHHHcCCC-ceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEE
Confidence                     001123455667888994 899999999888888888866    99965 556677999999999999999


Q ss_pred             ecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        619 TLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       619 t~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      +-.......     ++. -|-..+++  .|.+++.+...++.+|++.++++...
T Consensus       369 ~s~~gg~~e-----iv~-~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~  416 (439)
T TIGR02472       369 ATDDGGPRD-----IIA-NCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRN  416 (439)
T ss_pred             EeCCCCcHH-----Hhc-CCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            865433222     221 23345543  58999999999999999988887654

This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.76  E-value=1.8e-07  Score=104.43  Aligned_cols=87  Identities=17%  Similarity=0.088  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691        132 VSEAEECYNTALRL--CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE  209 (673)
Q Consensus       132 ~~~A~~~~~~al~~--~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  209 (673)
                      ..++....++++.+  +|.++.++..+|..+...|++++|...+++|++++| +..+|..+|.++...|++++|++.|++
T Consensus       400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~  478 (517)
T PRK10153        400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST  478 (517)
T ss_pred             HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45556666666664  677788888889988889999999999999999998 478899999999999999999999999


Q ss_pred             HHHhCCCCHH
Q psy17691        210 AIRIQPSFAD  219 (673)
Q Consensus       210 al~~~p~~~~  219 (673)
                      |++++|.++.
T Consensus       479 A~~L~P~~pt  488 (517)
T PRK10153        479 AFNLRPGENT  488 (517)
T ss_pred             HHhcCCCCch
Confidence            9999998764

>PLN03077 Protein ECB2; Provisional

Probab=98.75  E-value=1.2e-06  Score=105.33  Aligned_cols=157  Identities=15%  Similarity=0.125  Sum_probs=113.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV--FPEFAAAHSNLASVLQQQG  198 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g  198 (673)
                      ..+..+.+.|+.++|...|++.    +.+..+|+.+...|.+.|+.++|++.|++..+.  .|+ ...+..+-..+.+.|
T Consensus       529 aLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g  603 (857)
T PLN03077        529 ALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSG  603 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcC
Confidence            3345556678888888888775    456778888888888888888888888887764  344 344555556677888


Q ss_pred             CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-------
Q psy17691        199 KLTDALLHYKEAIRIQ--PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG-------  269 (673)
Q Consensus       199 ~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~-------  269 (673)
                      ++++|.++|++..+..  ..+...|..+..+|.+.|++++|.+.+++. .+.|+ ...|..|...+...|+.+       
T Consensus       604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~  681 (857)
T PLN03077        604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQ  681 (857)
T ss_pred             hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHH
Confidence            8888888888877432  123567888888888888888888888775 34554 666777777777667665       


Q ss_pred             --cccCCCCHHHHHHHH
Q psy17691        270 --FFIRTDLNSAYFWLL  284 (673)
Q Consensus       270 --l~l~p~~~~a~~~l~  284 (673)
                        ++++|++...|..++
T Consensus       682 ~l~~l~p~~~~~y~ll~  698 (857)
T PLN03077        682 HIFELDPNSVGYYILLC  698 (857)
T ss_pred             HHHhhCCCCcchHHHHH
Confidence              567888877776655

>PLN03077 Protein ECB2; Provisional

Probab=98.75  E-value=1.4e-06  Score=104.70  Aligned_cols=246  Identities=13%  Similarity=0.116  Sum_probs=169.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH---------------HHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLA---------------NALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la---------------~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|.+.|++..+   .+...|..+...|.+.|+.+.+...+...               .++...|..+.+.. ....
T Consensus       439 ~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~-i~~~  514 (857)
T PLN03077        439 CIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE-IHAH  514 (857)
T ss_pred             CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH-HHHH
Confidence            46788888887543   35667888888888888655544444332               23333344333321 1111


Q ss_pred             Hhh--cCCCc--hhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHH-HHHHHHcCCHHHHHHHHH
Q psy17691         66 TRE--LAPGN--RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY-IISVLLLIQVSEAEECYN  140 (673)
Q Consensus        66 ~~~--l~p~~--~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~-~~~~~~~g~~~~A~~~~~  140 (673)
                      ...  +.++.  ...+-..|...|+              .+++...+...  ..+...|.. +..+...|+.++|++.|+
T Consensus       515 ~~~~g~~~~~~~~naLi~~y~k~G~--------------~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~  578 (857)
T PLN03077        515 VLRTGIGFDGFLPNALLDLYVRCGR--------------MNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFN  578 (857)
T ss_pred             HHHhCCCccceechHHHHHHHHcCC--------------HHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence            111  11111  1112222333232              22333333322  445566644 455667999999999999


Q ss_pred             HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        141 TALRL--CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFP--EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS  216 (673)
Q Consensus       141 ~al~~--~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  216 (673)
                      +..+.  .|+ ...+..+-..+...|+.++|.++|+...+..+  -+...|..+...+.+.|++++|.+.+++. ...|+
T Consensus       579 ~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd  656 (857)
T PLN03077        579 RMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD  656 (857)
T ss_pred             HHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence            98875  454 45566677789999999999999999885432  23578899999999999999999999875 35565


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       217 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                       ...|..|-..+...|+.+.|....++.++++|++...+..|+.+|...|+++
T Consensus       657 -~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~  708 (857)
T PLN03077        657 -PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD  708 (857)
T ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH
Confidence             7788888888999999999999999999999999999999999999999987

>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant

Probab=98.75  E-value=9.2e-08  Score=112.18  Aligned_cols=164  Identities=10%  Similarity=0.049  Sum_probs=115.0

Q ss_pred             cCCCCCcEEEecCCccc--ccChhhHHHHHHHHhc--ccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCc
Q psy17691        469 YGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKA--VPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPN  544 (673)
Q Consensus       469 ~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~--~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (673)
                      ++.+.+..++++++|+.  |....+++++..+...  .|+.++ ++|.   ++. .      ..+.+             
T Consensus       473 ~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~L-IiG~---gdd-~------d~l~~-------------  528 (1050)
T TIGR02468       473 FFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTL-IMGN---RDD-I------DEMSS-------------  528 (1050)
T ss_pred             hcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEEE-EEec---Cch-h------hhhhc-------------
Confidence            45566667777778765  8999999999998643  355554 3441   000 0      00000             


Q ss_pred             hhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccc----cEEecC-CCCCCcchhhhhhhcCCceee
Q psy17691        545 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----DVCLDT-PLCNGHTTSMDVLWTGTPVVT  619 (673)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~----Di~Ld~-~p~~g~~t~~eal~~GvPvvt  619 (673)
                             ..+.....+++...+.|+. ++|.|.|..+.++...+|+.+    |||+-| +-++=|+|.+|||++|+|||+
T Consensus       529 -------~~~~~l~~L~~li~~lgL~-g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVA  600 (1050)
T TIGR02468       529 -------GSSSVLTSVLKLIDKYDLY-GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVA  600 (1050)
T ss_pred             -------cchHHHHHHHHHHHHhCCC-CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEE
Confidence                   0122345678888999995 999999999998888888877    699664 567779999999999999998


Q ss_pred             cCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        620 LPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       620 ~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      -.-.....     ++ .-|-+.++.  .|.+++.+...++.+|++.+++++..
T Consensus       601 SdvGG~~E-----II-~~g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~  647 (1050)
T TIGR02468       601 TKNGGPVD-----IH-RVLDNGLLVDPHDQQAIADALLKLVADKQLWAECRQN  647 (1050)
T ss_pred             eCCCCcHH-----Hh-ccCCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            64322221     22 124555554  47899999999999999999988764

Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.

>PHA01633 putative glycosyl transferase group 1

Probab=98.75  E-value=3.9e-08  Score=103.35  Aligned_cols=109  Identities=15%  Similarity=0.117  Sum_probs=84.3

Q ss_pred             cccccCCC-CCcEEEecCCcc--cccChhhHHHHHHHHhcccC----eeEEeeccCCcCCCCCCCCcccccCCCCccchh
Q psy17691        465 SRQQYGLP-EDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPN----SILWLLKFPAVGEANISRPLFRPRLRPSASTSI  537 (673)
Q Consensus       465 ~r~~~~l~-~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (673)
                      .|++++.+ .+.++|++++|+  .|..+.++++|.++.++.|+    .++++++                          
T Consensus       137 ~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG--------------------------  190 (335)
T PHA01633        137 LKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVIS--------------------------  190 (335)
T ss_pred             HHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEc--------------------------
Confidence            45666654 466788888875  48999999999999988886    3666554                          


Q ss_pred             hhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEec---cCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhc
Q psy17691        538 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFS---NVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWT  613 (673)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~---~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~  613 (673)
                                     .        ..+.+.++ .++|.|.   |..+.++....|..+|+++- |..++-|.+.+|||+|
T Consensus       191 ---------------~--------~~~~~l~l-~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~  246 (335)
T PHA01633        191 ---------------H--------KQFTQLEV-PANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAM  246 (335)
T ss_pred             ---------------H--------HHHHHcCC-CCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHc
Confidence                           0        12355677 4899998   56678899999999999966 4577889999999999


Q ss_pred             CCceeecCCC
Q psy17691        614 GTPVVTLPGE  623 (673)
Q Consensus       614 GvPvvt~~g~  623 (673)
                      |+|||+-...
T Consensus       247 G~PVVas~~~  256 (335)
T PHA01633        247 GTPVIHQLMP  256 (335)
T ss_pred             CCCEEEccCC
Confidence            9999986444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.74  E-value=3.4e-07  Score=93.28  Aligned_cols=104  Identities=16%  Similarity=0.282  Sum_probs=92.6

Q ss_pred             hhHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q psy17691        117 GTTFSYIISV-LLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSN  189 (673)
Q Consensus       117 ~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~  189 (673)
                      ...|..+..+ +..|+|++|+..|++.++.+|++   +.+++.+|.+|+..|++++|+..|+++++.+|++   +++++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3344455444 55799999999999999999998   5899999999999999999999999999998875   789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691        190 LASVLQQQGKLTDALLHYKEAIRIQPSFADA  220 (673)
Q Consensus       190 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  220 (673)
                      +|.++..+|++++|++.|+++++..|+...+
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            9999999999999999999999999997654

>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.74  E-value=7.2e-08  Score=103.17  Aligned_cols=152  Identities=18%  Similarity=0.123  Sum_probs=110.0

Q ss_pred             cccccCCCCCcE--EEecCCcc--cccChhhHHHHHHHHhc-ccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691        465 SRQQYGLPEDAI--VYCNFNQL--YKIDPSTLQMWVNVLKA-VPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL  539 (673)
Q Consensus       465 ~r~~~~l~~~~~--~~~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (673)
                      .+..++++.+..  .|++....  .|..+.++++|..+.+. .|+.+++++|.                           
T Consensus       181 ~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~---------------------------  233 (365)
T cd03825         181 ARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGA---------------------------  233 (365)
T ss_pred             HHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCC---------------------------
Confidence            456677776643  35555544  79999999999987765 68889988871                           


Q ss_pred             hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcC-hHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCce
Q psy17691        540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA-KEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPV  617 (673)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~-~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPv  617 (673)
                                    +....       ..++ .++|.|+|..+ .++....|+.+|+++-|. ..+.|.+++|||.+|+||
T Consensus       234 --------------~~~~~-------~~~~-~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~Pv  291 (365)
T cd03825         234 --------------SDPEI-------PPDL-PFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPV  291 (365)
T ss_pred             --------------Cchhh-------hccC-CCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCE
Confidence                          11100       1144 37899999998 778888999999998765 678899999999999999


Q ss_pred             eecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        618 VTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       618 vt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      |+.....+..     ++.. +-..++.  .|.+++++...++.+|++.+.+++...
T Consensus       292 I~~~~~~~~e-----~~~~-~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  341 (365)
T cd03825         292 VAFDVGGIPD-----IVDH-GVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAA  341 (365)
T ss_pred             EEecCCCChh-----heeC-CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            9876544433     1211 2234443  378999999999999999888777643

wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.74  E-value=3.1e-07  Score=98.22  Aligned_cols=113  Identities=23%  Similarity=0.163  Sum_probs=82.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691        128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHY  207 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~  207 (673)
                      ..+++++|++.+++..+.+|+   +...++.++...++-.+|++.++++++..|.+...+...+..+...++++.|++..
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iA  257 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIA  257 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            356777777777777776654   45557777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691        208 KEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR  243 (673)
Q Consensus       208 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~  243 (673)
                      ++++++.|++...|..|+.+|..+|++++|+..+..
T Consensus       258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            777777777777777777777777777777765553

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2376|consensus

Probab=98.73  E-value=4.9e-07  Score=97.25  Aligned_cols=128  Identities=18%  Similarity=0.148  Sum_probs=83.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCC
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE-FAAAHSNLASVLQQQGK  199 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~  199 (673)
                      ..+..+|++++|++|...|+..++.+.++.+.......+-...  -..+.  ..+.....|. ..+.++|.+.++...|+
T Consensus       115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~gk  190 (652)
T KOG2376|consen  115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--ALQVQ--LLQSVPEVPEDSYELLYNTACILIENGK  190 (652)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hhhHH--HHHhccCCCcchHHHHHHHHHHHHhccc
Confidence            4455556666666666666666665554443322221111100  00000  2222333343 57889999999999999


Q ss_pred             HHHHHHHHHHHHHhC--------CC--C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        200 LTDALLHYKEAIRIQ--------PS--F-----ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       200 ~~eA~~~~~~al~~~--------p~--~-----~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~  252 (673)
                      |.+|++.+++++++.        .+  .     ..+...++.++..+|+.++|...|...++.+|-+.
T Consensus       191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            999999999995541        11  1     23677899999999999999999999999988664

>PRK14098 glycogen synthase; Provisional

Probab=98.73  E-value=1.3e-07  Score=105.68  Aligned_cols=157  Identities=14%  Similarity=0.043  Sum_probs=108.9

Q ss_pred             ccccccCCC--CCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691        464 TSRQQYGLP--EDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL  539 (673)
Q Consensus       464 ~~r~~~~l~--~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (673)
                      ..++++|++  ++.+++++++|+.  |-.+.+++++.++++  ++.+|+++|.   |                       
T Consensus       294 ~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~---G-----------------------  345 (489)
T PRK14098        294 ALLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGS---G-----------------------  345 (489)
T ss_pred             HHHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeC---C-----------------------
Confidence            456778998  4567888888765  888999999999885  4789999881   0                       


Q ss_pred             hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCcee
Q psy17691        540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVV  618 (673)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvv  618 (673)
                                   +...++.+++..+++   ++||.|.+..+.++....|..+|++|-| ..++-|.|.+|||++|+|+|
T Consensus       346 -------------~~~~~~~l~~l~~~~---~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppV  409 (489)
T PRK14098        346 -------------DKEYEKRFQDFAEEH---PEQVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPV  409 (489)
T ss_pred             -------------CHHHHHHHHHHHHHC---CCCEEEEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeE
Confidence                         111345677776665   3799999998888888999999999765 46688999999999997666


Q ss_pred             ecCCCcchhhhHHHHHHhc---CCCcccc--CCHHHHHHHHHH---hcCCHHHHHHHHh
Q psy17691        619 TLPGETLASRVAASQLATL---GCPELIA--RTHKEYQDIAIR---LGTDRDYCEKALL  669 (673)
Q Consensus       619 t~~g~~~~~r~~~~~l~~~---gl~~~ia--~~~~~yv~~a~~---la~d~~~~~~~~~  669 (673)
                      +........     .+...   |-+.++.  .|.+++.+...+   +.+|++.+++++.
T Consensus       410 v~~~GGl~d-----~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~  463 (489)
T PRK14098        410 AYAGGGIVE-----TIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEERWEELVL  463 (489)
T ss_pred             EecCCCCce-----eeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            543221111     01110   2233433  367777766544   5578888877754

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.72  E-value=5.1e-07  Score=93.72  Aligned_cols=134  Identities=24%  Similarity=0.295  Sum_probs=105.8

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------H
Q psy17691        118 TTFSYIISVLLLIQVSEAEECYNTALRLCPT--H----ADSLNNLANIKREQ-GYIEEATRLYLKALEVFPEF------A  184 (673)
Q Consensus       118 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~----~~a~~~Lg~~~~~~-g~~~eA~~~~~~al~~~p~~------~  184 (673)
                      ..+..+..++...++++|+.+|++++++.-.  .    +.++..+|.+|... |++++|+++|++|+++....      .
T Consensus        76 ~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~  155 (282)
T PF14938_consen   76 KAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAA  155 (282)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence            3455566677777999999999999997422  2    56889999999999 99999999999999874322      4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF-------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~  251 (673)
                      .++..+|.++...|+|++|++.|++.....-++       ...+...+.|+...|+...|...+++....+|..
T Consensus       156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            678899999999999999999999998764221       2356778889999999999999999999998865

>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional

Probab=98.71  E-value=8.3e-08  Score=103.32  Aligned_cols=138  Identities=12%  Similarity=0.084  Sum_probs=102.4

Q ss_pred             cEEEecCCccc----ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhc
Q psy17691        475 AIVYCNFNQLY----KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLL  550 (673)
Q Consensus       475 ~~~~~~~~~~~----K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (673)
                      .+++++++++.    |.....++.+..+.   ++.+|+++|                                       
T Consensus       180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG---------------------------------------  217 (359)
T PRK09922        180 PAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIG---------------------------------------  217 (359)
T ss_pred             CcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEe---------------------------------------
Confidence            45666767753    66667777777653   478999888                                       


Q ss_pred             cCChhhhhhHHHHHHHcCCCCCeEEeccCcC--hHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecC-CCcch
Q psy17691        551 KFPAVGEANIQATAQALGLDQHRILFSNVAA--KEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLP-GETLA  626 (673)
Q Consensus       551 ~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~--~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~-g~~~~  626 (673)
                        +++..+.+++..++.|+. ++|.|.|..+  .++....|..+|+++-|. .++-|+|++|||++|+|||+.. .....
T Consensus       218 --~g~~~~~l~~~~~~~~l~-~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~  294 (359)
T PRK09922        218 --DGSDFEKCKAYSRELGIE-QRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPR  294 (359)
T ss_pred             --CCccHHHHHHHHHHcCCC-CeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChH
Confidence              455567888888999994 8999999764  366777889999997654 4566999999999999999976 32222


Q ss_pred             hhhHHHHHHhcCCCccc--cCCHHHHHHHHHHhcCCHHH
Q psy17691        627 SRVAASQLATLGCPELI--ARTHKEYQDIAIRLGTDRDY  663 (673)
Q Consensus       627 ~r~~~~~l~~~gl~~~i--a~~~~~yv~~a~~la~d~~~  663 (673)
                           .++.. |...++  ..|.+++++...++.+|++.
T Consensus       295 -----eiv~~-~~~G~lv~~~d~~~la~~i~~l~~~~~~  327 (359)
T PRK09922        295 -----DIIKP-GLNGELYTPGNIDEFVGKLNKVISGEVK  327 (359)
T ss_pred             -----HHccC-CCceEEECCCCHHHHHHHHHHHHhCccc
Confidence                 23322 445544  36899999999999999973

>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.70  E-value=8.1e-08  Score=102.41  Aligned_cols=155  Identities=14%  Similarity=0.041  Sum_probs=113.7

Q ss_pred             CCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691        470 GLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL  547 (673)
Q Consensus       470 ~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (673)
                      ..+.+.++++.++++  .|..+.+++++..+....|+.+|+++|.                                   
T Consensus       190 ~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~-----------------------------------  234 (365)
T cd03809         190 LYLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGK-----------------------------------  234 (365)
T ss_pred             hcCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecC-----------------------------------
Confidence            334445555555654  5888999999999999988889998871                                   


Q ss_pred             hhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcch
Q psy17691        548 WLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLA  626 (673)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~  626 (673)
                           .............+.+. .++|.|.|..+.++....|..+|+++-|. ..+.|.+.+|||++|+|||+-....+.
T Consensus       235 -----~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~  308 (365)
T cd03809         235 -----RGWLNEELLARLRELGL-GDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLP  308 (365)
T ss_pred             -----CccccHHHHHHHHHcCC-CCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCcc
Confidence                 11112223333356777 58999999999999999999999998764 567799999999999999997665443


Q ss_pred             hhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        627 SRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       627 ~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ..+     ...|. -+...|.++.++...++.+|++.+.++.+..
T Consensus       309 e~~-----~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~  347 (365)
T cd03809         309 EVA-----GDAAL-YFDPLDPEALAAAIERLLEDPALREELRERG  347 (365)
T ss_pred             cee-----cCcee-eeCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            322     11121 1334689999999999999999999887643

mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.

>TIGR02470 sucr_synth sucrose synthase

Probab=98.70  E-value=2e-07  Score=107.13  Aligned_cols=168  Identities=11%  Similarity=0.038  Sum_probs=110.6

Q ss_pred             ccccCC--CCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691        466 RQQYGL--PEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA  541 (673)
Q Consensus       466 r~~~~l--~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (673)
                      ++.+|+  +.+..++++++|+.  |..+.++++++++....++++|+++|....+..             +  .+     
T Consensus       539 ~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~-------------s--~d-----  598 (784)
T TIGR02470       539 DEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKE-------------S--KD-----  598 (784)
T ss_pred             HHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCccccc-------------c--cc-----
Confidence            356776  45667778888775  889999999988755456789998872100000             0  00     


Q ss_pred             cCchhhhhccCC-hhhhhhHHHHHHHcCCCCCeEEeccCc-ChH---HHHHhc-ccccEEec-CCCCCCcchhhhhhhcC
Q psy17691        542 VPNSILWLLKFP-AVGEANIQATAQALGLDQHRILFSNVA-AKE---EHVRRG-QLADVCLD-TPLCNGHTTSMDVLWTG  614 (673)
Q Consensus       542 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~rv~~~~~~-~~~---~~~~~~-~~~Di~Ld-~~p~~g~~t~~eal~~G  614 (673)
                                .. ....+.+++.+.++|+. ++|.|+|.. +..   ++...+ ..+|||+- |..++-|.|.+|||++|
T Consensus       599 ----------~ee~~~i~~L~~la~~~gL~-g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcG  667 (784)
T TIGR02470       599 ----------REEQAEIEKMHNLIDQYQLH-GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCG  667 (784)
T ss_pred             ----------hhHHHHHHHHHHHHHHhCCC-CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcC
Confidence                      00 01235677888999995 999999964 433   444433 35689865 56778899999999999


Q ss_pred             CceeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhc----CCHHHHHHHHhh
Q psy17691        615 TPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLG----TDRDYCEKALLY  670 (673)
Q Consensus       615 vPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la----~d~~~~~~~~~~  670 (673)
                      +|||+-.-.....     ++. -|-++++.  .|.++..+...++.    +|++.+.+++..
T Consensus       668 lPVVAT~~GG~~E-----iV~-dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~  723 (784)
T TIGR02470       668 LPTFATRFGGPLE-----IIQ-DGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQG  723 (784)
T ss_pred             CCEEEcCCCCHHH-----Hhc-CCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            9999754322211     111 15556554  36788888777654    799999888765

This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.

>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.68  E-value=2.3e-07  Score=98.42  Aligned_cols=146  Identities=23%  Similarity=0.224  Sum_probs=112.0

Q ss_pred             CCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691        470 GLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL  547 (673)
Q Consensus       470 ~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (673)
                      +...+.++++++++.  .|....+++++..+.+..|+.++.+.|                                    
T Consensus       197 ~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g------------------------------------  240 (377)
T cd03798         197 GLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVG------------------------------------  240 (377)
T ss_pred             cCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEc------------------------------------
Confidence            444566777777765  577888999999999888999999887                                    


Q ss_pred             hhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcch
Q psy17691        548 WLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLA  626 (673)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~  626 (673)
                           .+.....+++.....++. ++|.+.|.++.++....|..+|+++-+. ..+.|++++|||++|+|||+-....+.
T Consensus       241 -----~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~  314 (377)
T cd03798         241 -----DGPLREALEALAAELGLE-DRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIP  314 (377)
T ss_pred             -----CCcchHHHHHHHHhcCCc-ceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCChH
Confidence                 233345566777778884 8999999999999999999999998765 568899999999999999986654332


Q ss_pred             hhhHHHHHHhcCCCccc--cCCHHHHHHHHHHhcCCHHH
Q psy17691        627 SRVAASQLATLGCPELI--ARTHKEYQDIAIRLGTDRDY  663 (673)
Q Consensus       627 ~r~~~~~l~~~gl~~~i--a~~~~~yv~~a~~la~d~~~  663 (673)
                      .     ++.. +-..++  ..+.++.++...++.+|++.
T Consensus       315 ~-----~~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~  347 (377)
T cd03798         315 E-----IITD-GENGLLVPPGDPEALAEAILRLLADPWL  347 (377)
T ss_pred             H-----HhcC-CcceeEECCCCHHHHHHHHHHHhcCcHH
Confidence            2     2222 222233  35899999999999999884

wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.

>KOG4234|consensus

Probab=98.68  E-value=2.3e-07  Score=87.04  Aligned_cols=108  Identities=26%  Similarity=0.361  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPEF-----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT  227 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  227 (673)
                      +..-|+-++..|+|++|..-|..||++.|..     ..+|.|.|.++.+++.++.|+..+.++|+++|.+..++...+.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            4455788899999999999999999999886     45788999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLAS  260 (673)
Q Consensus       228 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~  260 (673)
                      |.++.++++|++.|++.++.+|...++.-....
T Consensus       178 yek~ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  178 YEKMEKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            999999999999999999999998877765544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.68  E-value=7.4e-06  Score=84.80  Aligned_cols=156  Identities=12%  Similarity=0.063  Sum_probs=114.0

Q ss_pred             HhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhC------------------------------------------
Q psy17691        110 YALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLC------------------------------------------  146 (673)
Q Consensus       110 ~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~------------------------------------------  146 (673)
                      ....|.++...... ..+...|++.+...+..+.-+..                                          
T Consensus       180 l~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l  259 (400)
T COG3071         180 LEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL  259 (400)
T ss_pred             HHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh
Confidence            44577787777655 44556888888888877765542                                          


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN  226 (673)
Q Consensus       147 p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~  226 (673)
                      .+++++...++.-+.+.|+.++|.+..+.+++..-+.. ....++  ...-++.+.=++..++.++..|+++..+..||.
T Consensus       260 r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~  336 (400)
T COG3071         260 RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGR  336 (400)
T ss_pred             hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHH
Confidence            11233444556667778888888888888887654433 111111  234567777778888888889999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       227 ~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +|.+.+.+.+|..+|+.|++..|+ ...+..+|.++.++|+.+
T Consensus       337 L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~  378 (400)
T COG3071         337 LALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPE  378 (400)
T ss_pred             HHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChH
Confidence            999999999999999999998886 566778999999999864

>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.67  E-value=2.1e-07  Score=97.97  Aligned_cols=151  Identities=20%  Similarity=0.197  Sum_probs=113.9

Q ss_pred             cCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchh
Q psy17691        469 YGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSI  546 (673)
Q Consensus       469 ~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (673)
                      ++.+.+.++|++++++.  |..+.+++++..+....|+.+|+++|                                   
T Consensus       183 ~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G-----------------------------------  227 (353)
T cd03811         183 LGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILG-----------------------------------  227 (353)
T ss_pred             cCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEc-----------------------------------
Confidence            34566677888888664  88899999999999888999999988                                   


Q ss_pred             hhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcc
Q psy17691        547 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETL  625 (673)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~  625 (673)
                            .+...+.+.+.....|+. ++|.|.|..+  +....|..+|+++-|. ..+.|++.+|||++|+|||+......
T Consensus       228 ------~~~~~~~~~~~~~~~~~~-~~v~~~g~~~--~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~  298 (353)
T cd03811         228 ------DGPLREELEALAKELGLA-DRVHFLGFQS--NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGP  298 (353)
T ss_pred             ------CCccHHHHHHHHHhcCCC-ccEEEecccC--CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCCh
Confidence                  233455667778888984 8999999854  5667888999998876 45679999999999999999765433


Q ss_pred             hhhhHHHHHHhcCCCcccc--CCHHHH---HHHHHHhcCCHHHHHHHHh
Q psy17691        626 ASRVAASQLATLGCPELIA--RTHKEY---QDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       626 ~~r~~~~~l~~~gl~~~ia--~~~~~y---v~~a~~la~d~~~~~~~~~  669 (673)
                      ..     ++.. |-..++.  .+.+++   ++....+..|++.+.+++.
T Consensus       299 ~e-----~i~~-~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  341 (353)
T cd03811         299 RE-----ILED-GENGLLVPVGDEAALAAAALALLDLLLDPELRERLAA  341 (353)
T ss_pred             HH-----HhcC-CCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHH
Confidence            22     2322 3334444  356667   7888888899999888876

WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.

>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.66  E-value=2.3e-07  Score=98.41  Aligned_cols=148  Identities=17%  Similarity=0.061  Sum_probs=108.1

Q ss_pred             CCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhh
Q psy17691        471 LPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILW  548 (673)
Q Consensus       471 l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (673)
                      .+.+.++|++++++  .|..+.+++++..+..  ++.+|+++|.                                    
T Consensus       187 ~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~------------------------------------  228 (359)
T cd03823         187 PPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGN------------------------------------  228 (359)
T ss_pred             CCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcC------------------------------------
Confidence            44556677777755  4777888899888776  8999998871                                    


Q ss_pred             hccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC--CCCCcchhhhhhhcCCceeecCCCcch
Q psy17691        549 LLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP--LCNGHTTSMDVLWTGTPVVTLPGETLA  626 (673)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~--p~~g~~t~~eal~~GvPvvt~~g~~~~  626 (673)
                           +..........   +. .++|.|.|..+.++....|..+|+++-|.  ..+.|++++|||++|+|||+-......
T Consensus       229 -----~~~~~~~~~~~---~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~  299 (359)
T cd03823         229 -----GLELEEESYEL---EG-DPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMA  299 (359)
T ss_pred             -----chhhhHHHHhh---cC-CCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHH
Confidence                 11111111111   44 47899999999999999999999998764  568899999999999999997654432


Q ss_pred             hhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        627 SRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       627 ~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      .     ++.. |...++.  .|.+++++...++.+|++.++.++...
T Consensus       300 e-----~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~  340 (359)
T cd03823         300 E-----LVRD-GVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGI  340 (359)
T ss_pred             H-----HhcC-CCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhH
Confidence            2     2322 2234443  357999999999999999999887754

ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).

>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.66  E-value=1.8e-07  Score=98.87  Aligned_cols=148  Identities=18%  Similarity=0.121  Sum_probs=107.2

Q ss_pred             CCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhc
Q psy17691        473 EDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLL  550 (673)
Q Consensus       473 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (673)
                      .+.++|++++++  .|..+.+++++..+.+..|+.+|+++|.                                      
T Consensus       186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~--------------------------------------  227 (359)
T cd03808         186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGD--------------------------------------  227 (359)
T ss_pred             CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcC--------------------------------------
Confidence            345666666654  5888899999999988889999999882                                      


Q ss_pred             cCChhhhhhHHH-HHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhh
Q psy17691        551 KFPAVGEANIQA-TAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASR  628 (673)
Q Consensus       551 ~~~~~~~~~~~~-~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r  628 (673)
                         +........ .+...+. .++|.|.|.  .++....|+.+|+++-|. .++.|++.+|||++|+|||+-....... 
T Consensus       228 ---~~~~~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~-  300 (359)
T cd03808         228 ---GDEENPAAILEIEKLGL-EGRVEFLGF--RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCRE-  300 (359)
T ss_pred             ---CCcchhhHHHHHHhcCC-cceEEEeec--cccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCchh-
Confidence               111111111 2455565 478999998  567888899999997765 5677999999999999999976544322 


Q ss_pred             hHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        629 VAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       629 ~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                          ++.. |-..++.  .|.+++++...++..|++.+.+++..
T Consensus       301 ----~i~~-~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~  339 (359)
T cd03808         301 ----AVID-GVNGFLVPPGDAEALADAIERLIEDPELRARMGQA  339 (359)
T ss_pred             ----hhhc-CcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence                2332 3344554  46899999999999999998887654

cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.66  E-value=6e-06  Score=91.77  Aligned_cols=119  Identities=21%  Similarity=0.082  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE  230 (673)
Q Consensus       151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  230 (673)
                      .+++.+|+.|...|++++|+++.+++++..|..++.+...|.++...|++.+|.+.++.|-+++..+-.+....+..+.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC-------HHHHH--HHHHHHHHcCCCc
Q psy17691        231 MQDIQGALQCYSRAIQINPGF-------ADAHS--NLASIHKDSGKRG  269 (673)
Q Consensus       231 ~g~~~eA~~~~~~Al~l~p~~-------~~a~~--~La~~~~~~g~~~  269 (673)
                      .|+.++|.+.+..-.+.+-+.       .-.|+  ..|.+|.+.|++.
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~  322 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG  322 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            999999999988765544211       11233  3567788887765

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type

Probab=98.64  E-value=2.2e-07  Score=103.97  Aligned_cols=158  Identities=15%  Similarity=0.013  Sum_probs=110.2

Q ss_pred             ccccccCCCC--CcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691        464 TSRQQYGLPE--DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL  539 (673)
Q Consensus       464 ~~r~~~~l~~--~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (673)
                      ..|+++|++.  +.+++++++|+.  |-.+.+++++.++.+.  +.+|+++|..                          
T Consensus       278 ~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g--------------------------  329 (473)
T TIGR02095       278 ALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTG--------------------------  329 (473)
T ss_pred             HHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCC--------------------------
Confidence            4678899986  778888888775  8888999999998864  4889988710                          


Q ss_pred             hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCcee
Q psy17691        540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVV  618 (673)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvv  618 (673)
                                   +...++.+++...+.+   +++.|.+..+.++....|..+|+++-|. .++-|.+.+|||++|+|||
T Consensus       330 -------------~~~~~~~l~~~~~~~~---~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI  393 (473)
T TIGR02095       330 -------------DPELEEALRELAERYP---GNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPI  393 (473)
T ss_pred             -------------CHHHHHHHHHHHHHCC---CcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeE
Confidence                         1122445666555543   5788887777777778999999998765 4566999999999999988


Q ss_pred             ecCCCcchhhhHHHHHHh-----cCCCcccc--CCHHHHHHHHHHhcC----CHHHHHHHHhh
Q psy17691        619 TLPGETLASRVAASQLAT-----LGCPELIA--RTHKEYQDIAIRLGT----DRDYCEKALLY  670 (673)
Q Consensus       619 t~~g~~~~~r~~~~~l~~-----~gl~~~ia--~~~~~yv~~a~~la~----d~~~~~~~~~~  670 (673)
                      +.....+..     ++..     .+-..++.  .|.+++.+...++..    |++.+++++..
T Consensus       394 ~s~~gg~~e-----~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~  451 (473)
T TIGR02095       394 VRRTGGLAD-----TVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKN  451 (473)
T ss_pred             EccCCCccc-----eEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            754432221     1111     01233333  478888777666555    89988888754

This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.

>PRK14099 glycogen synthase; Provisional

Probab=98.64  E-value=3.6e-07  Score=102.00  Aligned_cols=160  Identities=23%  Similarity=0.146  Sum_probs=103.5

Q ss_pred             ccccccCCCC--CcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691        464 TSRQQYGLPE--DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL  539 (673)
Q Consensus       464 ~~r~~~~l~~--~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (673)
                      ..|+++|++.  +.++|++++|+.  |..+.++++..++++.  +.+|+++|.   |                       
T Consensus       282 ~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~---G-----------------------  333 (485)
T PRK14099        282 ALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGS---G-----------------------  333 (485)
T ss_pred             HHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEec---C-----------------------
Confidence            4567899984  567888888765  8899999999988753  678888871   0                       


Q ss_pred             hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeE-EeccCcChHHHHHhc-ccccEEecC-CCCCCcchhhhhhhcCC-
Q psy17691        540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRI-LFSNVAAKEEHVRRG-QLADVCLDT-PLCNGHTTSMDVLWTGT-  615 (673)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv-~~~~~~~~~~~~~~~-~~~Di~Ld~-~p~~g~~t~~eal~~Gv-  615 (673)
                                   +...++.+++...+++   +++ .|+|.  .++....| ..+|+|+-| ..++-|.+.+|||++|+ 
T Consensus       334 -------------~~~~~~~l~~l~~~~~---~~v~~~~G~--~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~p  395 (485)
T PRK14099        334 -------------DAELEARFRAAAQAYP---GQIGVVIGY--DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAV  395 (485)
T ss_pred             -------------CHHHHHHHHHHHHHCC---CCEEEEeCC--CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCC
Confidence                         1122455666665553   455 68886  35555555 579999765 46678999999999995 


Q ss_pred             ceeecCCCcchhhhHH--HHHHhcC-CCcccc--CCHHHHHHHHHH---hcCCHHHHHHHHhh
Q psy17691        616 PVVTLPGETLASRVAA--SQLATLG-CPELIA--RTHKEYQDIAIR---LGTDRDYCEKALLY  670 (673)
Q Consensus       616 Pvvt~~g~~~~~r~~~--~~l~~~g-l~~~ia--~~~~~yv~~a~~---la~d~~~~~~~~~~  670 (673)
                      |||+-.|.. ..-+..  ......| -..++.  .|.+++.+...+   +.+|++.+++++..
T Consensus       396 pVvs~~GGl-~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d~~~~~~l~~~  457 (485)
T PRK14099        396 PVVARVGGL-ADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFADPVAWRRLQRN  457 (485)
T ss_pred             cEEeCCCCc-cceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            666644421 110000  0000001 123443  467888776654   78899998888764

>PLN02605 monogalactosyldiacylglycerol synthase

Probab=98.63  E-value=2.8e-07  Score=100.07  Aligned_cols=157  Identities=13%  Similarity=0.048  Sum_probs=106.3

Q ss_pred             ccccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHh----cccCee-EEeeccCCcCCCCCCCCcccccCCCCccch
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLK----AVPNSI-LWLLKFPAVGEANISRPLFRPRLRPSASTS  536 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~----~~p~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  536 (673)
                      ..|+++|++++..+++.+++.  .|....+++.+..++.    ..|+.+ +++.|                         
T Consensus       195 ~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G-------------------------  249 (382)
T PLN02605        195 ELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICG-------------------------  249 (382)
T ss_pred             HHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEEC-------------------------
Confidence            467889999887776666654  5666777777776552    235554 44555                         


Q ss_pred             hhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCc
Q psy17691        537 IVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTP  616 (673)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvP  616 (673)
                                      .+.   .+++.+.+... ..+|.|+|..+  +...+|..+|+++.+   +||.|++|||++|+|
T Consensus       250 ----------------~~~---~~~~~L~~~~~-~~~v~~~G~~~--~~~~l~~aaDv~V~~---~g~~ti~EAma~g~P  304 (382)
T PLN02605        250 ----------------RNK---KLQSKLESRDW-KIPVKVRGFVT--NMEEWMGACDCIITK---AGPGTIAEALIRGLP  304 (382)
T ss_pred             ----------------CCH---HHHHHHHhhcc-cCCeEEEeccc--cHHHHHHhCCEEEEC---CCcchHHHHHHcCCC
Confidence                            111   22333333333 25799999875  577788899999863   478899999999999


Q ss_pred             eeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCC-HHHHHHHHhhh
Q psy17691        617 VVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD-RDYCEKALLYH  671 (673)
Q Consensus       617 vvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d-~~~~~~~~~~~  671 (673)
                      ||+..--.......+..+...|..- ...|.++..+...+|..| ++.+++|+...
T Consensus       305 vI~~~~~pgqe~gn~~~i~~~g~g~-~~~~~~~la~~i~~ll~~~~~~~~~m~~~~  359 (382)
T PLN02605        305 IILNGYIPGQEEGNVPYVVDNGFGA-FSESPKEIARIVAEWFGDKSDELEAMSENA  359 (382)
T ss_pred             EEEecCCCccchhhHHHHHhCCcee-ecCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9987632212222344455556643 458999999999999888 99998887653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.63  E-value=4.9e-06  Score=84.10  Aligned_cols=124  Identities=18%  Similarity=0.150  Sum_probs=102.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHh
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQG---------------Y---IEEATRLYLKALE  178 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g---------------~---~~eA~~~~~~al~  178 (673)
                      +..+..+++.+++++|+..+++.++.+|++   +.+++.+|.++...+               +   ..+|+..|++.++
T Consensus        73 l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~  152 (243)
T PRK10866         73 LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR  152 (243)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH
Confidence            345567788999999999999999999887   567889998864443               1   3578899999999


Q ss_pred             hCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHH
Q psy17691        179 VFPEFAA-----------------AHSNLASVLQQQGKLTDALLHYKEAIRIQPSF---ADAYSNMGNTLKEMQDIQGAL  238 (673)
Q Consensus       179 ~~p~~~~-----------------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~  238 (673)
                      ..|+...                 --+..|..|.+.|+|..|+.-++.+++..|+.   .+++..++..|..+|..++|.
T Consensus       153 ~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~  232 (243)
T PRK10866        153 GYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQAD  232 (243)
T ss_pred             HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHH
Confidence            9998731                 12356788999999999999999999998875   578999999999999999998


Q ss_pred             HHHHH
Q psy17691        239 QCYSR  243 (673)
Q Consensus       239 ~~~~~  243 (673)
                      .+.+.
T Consensus       233 ~~~~~  237 (243)
T PRK10866        233 KVAKI  237 (243)
T ss_pred             HHHHH
Confidence            87654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.62  E-value=3.3e-07  Score=94.96  Aligned_cols=133  Identities=17%  Similarity=0.099  Sum_probs=111.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy17691        122 YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG--YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK  199 (673)
Q Consensus       122 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  199 (673)
                      ....++.+++++.|.+.++++-+.+.+..-+....+++....|  ++.+|...|++..+..+..+..++.++.++..+|+
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~  216 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH  216 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence            3456778999999999999999888877666666677777666  59999999999988888899999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHH
Q psy17691        200 LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI-QGALQCYSRAIQINPGFADA  254 (673)
Q Consensus       200 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~eA~~~~~~Al~l~p~~~~a  254 (673)
                      |++|.+.++++++.+|++++++.|+..+...+|+. +.+.+++.+....+|+++-.
T Consensus       217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            99999999999999999999999999999999998 66778888888889988754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.61  E-value=8.6e-07  Score=78.80  Aligned_cols=96  Identities=28%  Similarity=0.235  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q psy17691        151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS---FADAYSNM  224 (673)
Q Consensus       151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l  224 (673)
                      .+++++|.++-..|+.++|+..|+++++.....   ..++..+|..+..+|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            355666666666777777777777776654332   456666677777777777777777776666666   55566666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Q psy17691        225 GNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       225 g~~~~~~g~~~eA~~~~~~Al~  246 (673)
                      +.++...|+.++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            6666677777777666666553

>PLN02275 transferase, transferring glycosyl groups

Probab=98.60  E-value=4.3e-07  Score=98.26  Aligned_cols=133  Identities=15%  Similarity=0.091  Sum_probs=96.0

Q ss_pred             EEEecCCcc--cccChhhHHHHHHHH-----------------hcccCeeEEeeccCCcCCCCCCCCcccccCCCCccch
Q psy17691        476 IVYCNFNQL--YKIDPSTLQMWVNVL-----------------KAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTS  536 (673)
Q Consensus       476 ~~~~~~~~~--~K~~~~~~~~~~~il-----------------~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  536 (673)
                      +++++.+++  .|-.+.++++...+.                 +..|+.+|+++|                         
T Consensus       214 ~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG-------------------------  268 (371)
T PLN02275        214 ALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITG-------------------------  268 (371)
T ss_pred             EEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEe-------------------------
Confidence            444555554  477778888877664                 235889999988                         


Q ss_pred             hhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEecc-CcChHHHHHhcccccEEecCC----CCCCcchhhhhh
Q psy17691        537 IVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSN-VAAKEEHVRRGQLADVCLDTP----LCNGHTTSMDVL  611 (673)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~-~~~~~~~~~~~~~~Di~Ld~~----p~~g~~t~~eal  611 (673)
                                      +|+.++.+++.++++|++ + ++|.+ .++.++....|..+|+++-+.    .++-+++++|||
T Consensus       269 ----------------~G~~~~~l~~~~~~~~l~-~-v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAm  330 (371)
T PLN02275        269 ----------------KGPQKAMYEEKISRLNLR-H-VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMF  330 (371)
T ss_pred             ----------------CCCCHHHHHHHHHHcCCC-c-eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHH
Confidence                            566778899999999995 5 77655 689999999999999997422    234588999999


Q ss_pred             hcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHh
Q psy17691        612 WTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRL  657 (673)
Q Consensus       612 ~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~l  657 (673)
                      +||+|||+......     ..++.. |-..++..+.+++.+...+|
T Consensus       331 A~G~PVVa~~~gg~-----~eiv~~-g~~G~lv~~~~~la~~i~~l  370 (371)
T PLN02275        331 GCGLPVCAVSYSCI-----GELVKD-GKNGLLFSSSSELADQLLEL  370 (371)
T ss_pred             HCCCCEEEecCCCh-----HHHccC-CCCeEEECCHHHHHHHHHHh
Confidence            99999998653222     123332 55566677788877766554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.60  E-value=7.1e-06  Score=84.92  Aligned_cols=125  Identities=20%  Similarity=0.197  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691        119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG  198 (673)
Q Consensus       119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  198 (673)
                      .-.++..+...|+.++|.+..+++++..-+.. ....++.  ..-++...=++..++.++..|+++..+..||.++++.+
T Consensus       266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~--l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~  342 (400)
T COG3071         266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPR--LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK  342 (400)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhh--cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh
Confidence            33556667789999999999999999754432 2222222  35678888999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       199 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      .|.+|..+++.+++..|. ...+..+|.++.++|+..+|.+++++++.+
T Consensus       343 ~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         343 LWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            999999999999999886 678999999999999999999999999854

>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.60  E-value=2e-07  Score=99.77  Aligned_cols=150  Identities=12%  Similarity=0.111  Sum_probs=102.5

Q ss_pred             cccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCc
Q psy17691        467 QQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPN  544 (673)
Q Consensus       467 ~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (673)
                      ..++++.+.+ +++++++  .|....++++++++..   +.+|+++|                                 
T Consensus       186 ~~~~~~~~~~-i~~~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG---------------------------------  228 (363)
T cd04955         186 KKYGLEPGRY-YLLVGRIVPENNIDDLIEAFSKSNS---GKKLVIVG---------------------------------  228 (363)
T ss_pred             HhcCCCCCcE-EEEEecccccCCHHHHHHHHHhhcc---CceEEEEc---------------------------------
Confidence            3455554432 3445554  4777888888877653   78899888                                 


Q ss_pred             hhhhhccCChhhhhhHHHHHH-HcCCCCCeEEeccCcChHHHHHhcccccEEec-CCC-CCCcchhhhhhhcCCceeecC
Q psy17691        545 SILWLLKFPAVGEANIQATAQ-ALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPL-CNGHTTSMDVLWTGTPVVTLP  621 (673)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p-~~g~~t~~eal~~GvPvvt~~  621 (673)
                              .+.....+.+.+. ..+. .++|+|+|.++.++....|..+|+++- |.. ++-|++.+|||++|+|||+-.
T Consensus       229 --------~~~~~~~~~~~~~~~~~~-~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~  299 (363)
T cd04955         229 --------NADHNTPYGKLLKEKAAA-DPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASD  299 (363)
T ss_pred             --------CCCCcchHHHHHHHHhCC-CCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEec
Confidence                    1212223444444 5666 489999999999999999999999955 445 677999999999999999865


Q ss_pred             CCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        622 GETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       622 g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      ......        .++-..++....+.+.+...++.+|++.+.++++.
T Consensus       300 ~~~~~e--------~~~~~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~  340 (363)
T cd04955         300 NPFNRE--------VLGDKAIYFKVGDDLASLLEELEADPEEVSAMAKA  340 (363)
T ss_pred             CCccce--------eecCCeeEecCchHHHHHHHHHHhCHHHHHHHHHH
Confidence            432211        11113344444445888899999999888887654

Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog

>PRK15331 chaperone protein SicA; Provisional

Probab=98.59  E-value=8.3e-07  Score=82.03  Aligned_cols=100  Identities=12%  Similarity=-0.006  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17691        118 TTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ  197 (673)
Q Consensus       118 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  197 (673)
                      ..|..+-.++..|++++|...|+-....+|.+.+.+..||.++..+++|++|+..|..+..++++++...+..|.++..+
T Consensus        39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l  118 (165)
T PRK15331         39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM  118 (165)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence            34566777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH
Q psy17691        198 GKLTDALLHYKEAIRIQPSFA  218 (673)
Q Consensus       198 g~~~eA~~~~~~al~~~p~~~  218 (673)
                      |+.++|+.+|+.+++ .|.+.
T Consensus       119 ~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        119 RKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             CCHHHHHHHHHHHHh-CcchH
Confidence            999999999999998 45543

>PRK00654 glgA glycogen synthase; Provisional

Probab=98.58  E-value=6.3e-07  Score=99.98  Aligned_cols=157  Identities=17%  Similarity=0.101  Sum_probs=104.5

Q ss_pred             ccccccCCCC-CcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhh
Q psy17691        464 TSRQQYGLPE-DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLK  540 (673)
Q Consensus       464 ~~r~~~~l~~-~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (673)
                      ..|+++|++. +.+++++++|+.  |-.+.+++++.++++.  +.+|+++|.   |                        
T Consensus       270 ~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~---g------------------------  320 (466)
T PRK00654        270 ALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGT---G------------------------  320 (466)
T ss_pred             HHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEec---C------------------------
Confidence            4578899985 677888888765  8899999999999864  788988871   0                        


Q ss_pred             ccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEe-ccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCcee
Q psy17691        541 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVV  618 (673)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~-~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvv  618 (673)
                                  +...++.+++...++|   +++.+ .|. +.+.....|..+|+++-|. .++-|+|.+|||++|+|||
T Consensus       321 ------------~~~~~~~l~~l~~~~~---~~v~~~~g~-~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V  384 (466)
T PRK00654        321 ------------DPELEEAFRALAARYP---GKVGVQIGY-DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPI  384 (466)
T ss_pred             ------------cHHHHHHHHHHHHHCC---CcEEEEEeC-CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEE
Confidence                        1123456777777775   45654 454 4444557889999997754 5677999999999999887


Q ss_pred             ecCCCcchhhhHHHHHHhc-----CCCcccc--CCHHHHHHHHHHhcC---CHHHHHHHHhh
Q psy17691        619 TLPGETLASRVAASQLATL-----GCPELIA--RTHKEYQDIAIRLGT---DRDYCEKALLY  670 (673)
Q Consensus       619 t~~g~~~~~r~~~~~l~~~-----gl~~~ia--~~~~~yv~~a~~la~---d~~~~~~~~~~  670 (673)
                      +........     ++..-     +-..++.  .|.+++.+...++..   |++.+.+++..
T Consensus       385 ~~~~gG~~e-----~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~  441 (466)
T PRK00654        385 VRRTGGLAD-----TVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQ  441 (466)
T ss_pred             EeCCCCccc-----eeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            754322211     01000     0223333  477888777666544   77777766543

>PRK13609 diacylglycerol glucosyltransferase; Provisional

Probab=98.57  E-value=7.4e-07  Score=96.72  Aligned_cols=107  Identities=10%  Similarity=-0.007  Sum_probs=76.5

Q ss_pred             hhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHH
Q psy17691        556 GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA  635 (673)
Q Consensus       556 ~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~  635 (673)
                      .++.+++.....+   ++|+|+|..+  +....|..+|+++.   .+||.|++|||++|+|||+.....-.....+.++.
T Consensus       243 ~~~~l~~~~~~~~---~~v~~~g~~~--~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~  314 (380)
T PRK13609        243 LKQSLEDLQETNP---DALKVFGYVE--NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFE  314 (380)
T ss_pred             HHHHHHHHHhcCC---CcEEEEechh--hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHH
Confidence            3456666655554   6899999874  45567788999983   46789999999999999985321111222334455


Q ss_pred             hcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        636 TLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       636 ~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ..|.. ++..+.++..+...++.+|++.+++++...
T Consensus       315 ~~G~~-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~  349 (380)
T PRK13609        315 RKGAA-VVIRDDEEVFAKTEALLQDDMKLLQMKEAM  349 (380)
T ss_pred             hCCcE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            55653 455789999999999999999999887653

>KOG1111|consensus

Probab=98.57  E-value=2e-07  Score=94.81  Aligned_cols=102  Identities=17%  Similarity=0.138  Sum_probs=90.0

Q ss_pred             EEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCC
Q psy17691        476 IVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFP  553 (673)
Q Consensus       476 ~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (673)
                      ++....+|+.  |-.+-.+.+..++-++.|+.++++.|                                         +
T Consensus       196 ~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~G-----------------------------------------D  234 (426)
T KOG1111|consen  196 ITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIG-----------------------------------------D  234 (426)
T ss_pred             eEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEec-----------------------------------------C
Confidence            5666666765  99999999999999999999999988                                         5


Q ss_pred             hhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceee
Q psy17691        554 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVT  619 (673)
Q Consensus       554 ~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt  619 (673)
                      |+-+..+++..+++-+ .+||.++|.+++++..+.|.+-||||.|. .+.=|++.+||+.+|+|||+
T Consensus       235 GPk~i~lee~lEk~~l-~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVs  300 (426)
T KOG1111|consen  235 GPKRIDLEEMLEKLFL-QDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVS  300 (426)
T ss_pred             CcccchHHHHHHHhhc-cCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEE
Confidence            6666677777788877 59999999999999999999999999975 88999999999999999995

>PLN00142 sucrose synthase

Probab=98.56  E-value=7.6e-07  Score=102.54  Aligned_cols=167  Identities=10%  Similarity=-0.011  Sum_probs=111.3

Q ss_pred             cccCC--CCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691        467 QQYGL--PEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV  542 (673)
Q Consensus       467 ~~~~l--~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (673)
                      +.+|+  +.+..++++++|+.  |..+..+++++++.+..++++|+++|....+..             +  ..      
T Consensus       563 e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~-------------s--~d------  621 (815)
T PLN00142        563 EHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSK-------------S--KD------  621 (815)
T ss_pred             HHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccc-------------c--cc------
Confidence            45676  34455777778775  888999999999877778899999872100000             0  00      


Q ss_pred             CchhhhhccCCh-hhhhhHHHHHHHcCCCCCeEEeccCc----ChHHHHHhcc-cccEEecC-CCCCCcchhhhhhhcCC
Q psy17691        543 PNSILWLLKFPA-VGEANIQATAQALGLDQHRILFSNVA----AKEEHVRRGQ-LADVCLDT-PLCNGHTTSMDVLWTGT  615 (673)
Q Consensus       543 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~rv~~~~~~----~~~~~~~~~~-~~Di~Ld~-~p~~g~~t~~eal~~Gv  615 (673)
                               ... .....+.+.+.+.|+. ++|.|+|..    +..+....+. .+|||+-| +-++-|.|.+|||++|+
T Consensus       622 ---------~ee~~el~~L~~La~~lgL~-~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~Gl  691 (815)
T PLN00142        622 ---------REEIAEIKKMHSLIEKYNLK-GQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGL  691 (815)
T ss_pred             ---------HHHHHHHHHHHHHHHHcCCC-CcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCC
Confidence                     000 1124577788899995 999998843    3356666555 47999765 56677999999999999


Q ss_pred             ceeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHH----hcCCHHHHHHHHhh
Q psy17691        616 PVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIR----LGTDRDYCEKALLY  670 (673)
Q Consensus       616 Pvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~----la~d~~~~~~~~~~  670 (673)
                      |||+-.-.....     ++. -|.+.++.  .+.++..+...+    +.+|++.+.+++..
T Consensus       692 PVVATdvGG~~E-----IV~-dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~  746 (815)
T PLN00142        692 PTFATCQGGPAE-----IIV-DGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDA  746 (815)
T ss_pred             CEEEcCCCCHHH-----Hhc-CCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            999854322211     111 26666654  378888777654    45899999988765

>PRK13608 diacylglycerol glucosyltransferase; Provisional

Probab=98.53  E-value=8.4e-07  Score=96.65  Aligned_cols=94  Identities=15%  Similarity=0.061  Sum_probs=74.4

Q ss_pred             CeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHH
Q psy17691        572 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQ  651 (673)
Q Consensus       572 ~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv  651 (673)
                      ++|.|.|..  ++...+|..+|+++-   -+||.|++|||++|+|+|+.....-.....+-++...|.. ++..|.++.+
T Consensus       256 ~~v~~~G~~--~~~~~~~~~aDl~I~---k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g-~~~~~~~~l~  329 (391)
T PRK13608        256 ENVLILGYT--KHMNEWMASSQLMIT---KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG-KIADTPEEAI  329 (391)
T ss_pred             CCeEEEecc--chHHHHHHhhhEEEe---CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE-EEeCCHHHHH
Confidence            579999986  466777889999984   2588999999999999999743222345566777777875 4467999999


Q ss_pred             HHHHHhcCCHHHHHHHHhhh
Q psy17691        652 DIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       652 ~~a~~la~d~~~~~~~~~~~  671 (673)
                      +...+|.+|++.+++|+...
T Consensus       330 ~~i~~ll~~~~~~~~m~~~~  349 (391)
T PRK13608        330 KIVASLTNGNEQLTNMISTM  349 (391)
T ss_pred             HHHHHHhcCHHHHHHHHHHH
Confidence            99999999999999988764

>KOG4648|consensus

Probab=98.53  E-value=3.2e-07  Score=92.43  Aligned_cols=109  Identities=23%  Similarity=0.270  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ  232 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g  232 (673)
                      ....|+-|+++|.|+||+.||.+++..+|.++..+.|.+..|++++++..|..-+..|+.++.....+|...|.+-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            44567888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        233 DIQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       233 ~~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      ...+|.+.++.+|++.|++.+....++.+
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            88888888888888888876665555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.53  E-value=4.8e-07  Score=73.14  Aligned_cols=67  Identities=21%  Similarity=0.310  Sum_probs=40.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      ..+|...+++++|+++++++++++|+++..+..+|.++.++|++++|++.|+++++..|++..+...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            3455566666666666666666666666666666666666666666666666666666665555443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.53  E-value=2.7e-07  Score=73.47  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=37.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA  259 (673)
Q Consensus       195 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La  259 (673)
                      ...|++++|++.|+++++.+|++..++..+|.+|.+.|++++|...+++++..+|+++..+.-++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            34555666666666666666666666666666666666666666666666666665555444443

...

>KOG3785|consensus

Probab=98.53  E-value=1e-05  Score=82.16  Aligned_cols=244  Identities=17%  Similarity=0.139  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCCC---------------cHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          2 IDLAIDTYRRAIELQPNFP-DAYCNLANALKEKGQPN---------------FPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~-~a~~~Lg~~~~~~g~~~---------------~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      |.-|+..++-.+..+.+.. .....+|.|++++|+++               .++.+.++|-++.-.|.+.+|...    
T Consensus        38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~----  113 (557)
T KOG3785|consen   38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI----  113 (557)
T ss_pred             chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH----
Confidence            6678888887776654443 55666788888888733               345566777777777777766421    


Q ss_pred             HhhcCCCchhhhhhh---hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691         66 TRELAPGNRIRIGYV---SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTA  142 (673)
Q Consensus        66 ~~~l~p~~~~~l~~~---~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~a  142 (673)
                       ..-.|......-..   ...++               .++.+-.+...+......-+..+...+..-.|++|+..|++.
T Consensus       114 -~~ka~k~pL~~RLlfhlahkln---------------dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrv  177 (557)
T KOG3785|consen  114 -AEKAPKTPLCIRLLFHLAHKLN---------------DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRV  177 (557)
T ss_pred             -HhhCCCChHHHHHHHHHHHHhC---------------cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence             11122222111111   11111               122222333333333344455566667777899999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHH----------------
Q psy17691        143 LRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ--GKLTDAL----------------  204 (673)
Q Consensus       143 l~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~eA~----------------  204 (673)
                      +..+|+.......+|.+|.++.-++-+.+.+.-.++..|++.-+.+.++..++++  |+..++.                
T Consensus       178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~  257 (557)
T KOG3785|consen  178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE  257 (557)
T ss_pred             HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence            9999999999999999999999999999999999999999998888888777654  3322221                


Q ss_pred             HHHH----------HHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        205 LHYK----------EAIRIQPS----FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       205 ~~~~----------~al~~~p~----~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      ..++          -|++.-|.    -+++..||...|.++++..+|+...+   +++|..+.-+.--|.++...|+-
T Consensus       258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe  332 (557)
T KOG3785|consen  258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQE  332 (557)
T ss_pred             HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhh
Confidence            1111          12222222    25678888888889999998888765   46888888888888888887764

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.52  E-value=3e-07  Score=73.17  Aligned_cols=64  Identities=27%  Similarity=0.199  Sum_probs=35.4

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17691        128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA  191 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  191 (673)
                      ..|++++|+..|+++++.+|++.++++.+|.+|.+.|++++|...+++++..+|+++..+..++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            3455555555555555555555555555555555555555555555555555555554444443

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.52  E-value=9e-06  Score=75.70  Aligned_cols=134  Identities=23%  Similarity=0.248  Sum_probs=109.0

Q ss_pred             hcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHH
Q psy17691        111 ALSPDDGTTFSYIISVLLLIQVSEAEECYNTALR-LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF--AAAH  187 (673)
Q Consensus       111 ~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~  187 (673)
                      ...|....-+.++..+.+.|++.||..+|++++. +.-+++..+..+++..+..+++.+|...+++..+.+|..  +...
T Consensus        84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            3456666666777778888999999999988887 466778888888888999999999999999988888764  6778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI  245 (673)
Q Consensus       188 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al  245 (673)
                      ..+|.++..+|++.+|...|+.++...|. +.+...++..+.++|+.++|..-|....
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            88888899999999999999999888886 7778888888888898888877665544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.52  E-value=3e-06  Score=75.40  Aligned_cols=93  Identities=31%  Similarity=0.272  Sum_probs=82.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHH
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPE---FAAAHSNLASV  193 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~la~~  193 (673)
                      |..+..+-..|+.++|+.+|+++++.....   ..++..+|..+..+|++++|+..+++++...|+   +..+...++.+
T Consensus         5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence            344555667999999999999999975444   568999999999999999999999999999898   78889999999


Q ss_pred             HHHcCCHHHHHHHHHHHHH
Q psy17691        194 LQQQGKLTDALLHYKEAIR  212 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~  212 (673)
                      +...|++++|++.+-.++.
T Consensus        85 L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            9999999999999988775

>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.51  E-value=4.7e-07  Score=96.95  Aligned_cols=97  Identities=12%  Similarity=0.044  Sum_probs=73.2

Q ss_pred             CCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcccc--C
Q psy17691        568 GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--R  645 (673)
Q Consensus       568 g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~  645 (673)
                      +. .++|+|.|.++.++....|..+|+++-|.-++-|++.+|||+||+|||+........     ++.. |-..++.  .
T Consensus       239 ~~-~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~~~e-----~i~~-~~~G~~~~~~  311 (351)
T cd03804         239 KA-GPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGGALE-----TVID-GVTGILFEEQ  311 (351)
T ss_pred             hc-CCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCCCcc-----eeeC-CCCEEEeCCC
Confidence            44 489999999999999999999999987655888999999999999999865432221     1221 2233333  5


Q ss_pred             CHHHHHHHHHHhcCCH-HHHHHHHhhh
Q psy17691        646 THKEYQDIAIRLGTDR-DYCEKALLYH  671 (673)
Q Consensus       646 ~~~~yv~~a~~la~d~-~~~~~~~~~~  671 (673)
                      +.++.++....+.+|+ ..++++++..
T Consensus       312 ~~~~la~~i~~l~~~~~~~~~~~~~~~  338 (351)
T cd03804         312 TVESLAAAVERFEKNEDFDPQAIRAHA  338 (351)
T ss_pred             CHHHHHHHHHHHHhCcccCHHHHHHHH
Confidence            7899999999999988 5666666543

wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.

>KOG4340|consensus

Probab=98.50  E-value=2.3e-06  Score=84.88  Aligned_cols=63  Identities=19%  Similarity=0.210  Sum_probs=33.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI  245 (673)
Q Consensus       183 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al  245 (673)
                      ......+.|.+.++.|++++|++-|+.+++...-++-.-++++.++++.|+++.|+++..+.+
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIi  205 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEII  205 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555555555555555555555544443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.49  E-value=7.2e-07  Score=72.06  Aligned_cols=69  Identities=28%  Similarity=0.268  Sum_probs=49.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        157 ANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       157 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  225 (673)
                      ..+|.+.+++++|+++++++++++|+++..+..+|.++..+|++++|++.++++++..|++..+....+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            456677777777777777777777777777777777777777777777777777777777666554443

>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed

Probab=98.49  E-value=7.5e-07  Score=96.60  Aligned_cols=157  Identities=18%  Similarity=0.151  Sum_probs=103.9

Q ss_pred             ccccccCCCCCcEE-EecCC-ccc---ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhh
Q psy17691        464 TSRQQYGLPEDAIV-YCNFN-QLY---KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIV  538 (673)
Q Consensus       464 ~~r~~~~l~~~~~~-~~~~~-~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (673)
                      ..|+++|++.+..+ +...+ +..   ++.+.+++++..+.+..|+.++++.+.                          
T Consensus       175 ~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~--------------------------  228 (380)
T PRK00025        175 AARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLV--------------------------  228 (380)
T ss_pred             HHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC--------------------------
Confidence            35677899876543 32222 332   456788899998888889988887651                          


Q ss_pred             hhccCchhhhhccCChhhhhhHHHHHHHc-CCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCce
Q psy17691        539 LKAVPNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPV  617 (673)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPv  617 (673)
                                    ++..++.+++...+. |+.   +.+..    .+...+|..+|+++-+    +|++++||+++|+||
T Consensus       229 --------------~~~~~~~~~~~~~~~~~~~---v~~~~----~~~~~~~~~aDl~v~~----sG~~~lEa~a~G~Pv  283 (380)
T PRK00025        229 --------------NPKRREQIEEALAEYAGLE---VTLLD----GQKREAMAAADAALAA----SGTVTLELALLKVPM  283 (380)
T ss_pred             --------------ChhhHHHHHHHHhhcCCCC---eEEEc----ccHHHHHHhCCEEEEC----ccHHHHHHHHhCCCE
Confidence                          123345666666666 663   44432    3567788899999774    377888999999999


Q ss_pred             eecCCCcchhhhHHHHHH---hcCC----------Ccccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        618 VTLPGETLASRVAASQLA---TLGC----------PELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       618 vt~~g~~~~~r~~~~~l~---~~gl----------~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      |+.+.-.......+..+.   ..|+          ++++.  .|.++..+...++.+|++.|++++...
T Consensus       284 I~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~  352 (380)
T PRK00025        284 VVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQALLEGF  352 (380)
T ss_pred             EEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            988654333322222221   1232          33332  367899999999999999999887753

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.48  E-value=5.6e-07  Score=95.73  Aligned_cols=69  Identities=22%  Similarity=0.115  Sum_probs=51.8

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA---HSNLASVLQQQGKLTDALLHYKEAIRI  213 (673)
Q Consensus       145 ~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~~  213 (673)
                      .+|+++.+++++|.+|..+|+|++|+.+|+++++++|++.++   |+|+|.+|..+|++++|++++++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            367777777777777777777777777777777777777643   777777777777777777777777776

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.48  E-value=7.2e-07  Score=94.91  Aligned_cols=69  Identities=23%  Similarity=0.314  Sum_probs=42.0

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        179 VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA---YSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       179 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      .+|+++.+|+|+|.+|+.+|+|++|+..|+++++++|++.++   |+|+|.+|..+|++++|++++++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            355666666666666666666666666666666666665533   666666666666666666666666654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.47  E-value=4.4e-06  Score=77.56  Aligned_cols=90  Identities=22%  Similarity=0.160  Sum_probs=76.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ  197 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  197 (673)
                      ..+..++..|++++|+..|++++...|+.   ..+...||.++..+|++++|+..++. +.-.+..+.++..+|.++...
T Consensus        53 ~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~  131 (145)
T PF09976_consen   53 QLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQ  131 (145)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHC
Confidence            34456667889999999999999988665   45788999999999999999999976 334445577889999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy17691        198 GKLTDALLHYKEAI  211 (673)
Q Consensus       198 g~~~eA~~~~~~al  211 (673)
                      |++++|+..|+++|
T Consensus       132 g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  132 GDYDEARAAYQKAL  145 (145)
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999999875

>PHA01630 putative group 1 glycosyl transferase

Probab=98.46  E-value=1.2e-06  Score=92.98  Aligned_cols=143  Identities=8%  Similarity=0.003  Sum_probs=91.4

Q ss_pred             cEEEecCCc--ccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        475 AIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       475 ~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      .++++..++  ..|..+.++++|..+.++.|+.+++++|                                         
T Consensus       142 ~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG-----------------------------------------  180 (331)
T PHA01630        142 PCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKS-----------------------------------------  180 (331)
T ss_pred             CEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEe-----------------------------------------
Confidence            344444444  5699999999999999888999999887                                         


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA  631 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~  631 (673)
                      ++..+..+      .|+. +   +.+.++.++....|+.+|+++-| ..++.|++.+|||++|+|||+-....+..=+..
T Consensus       181 ~~~~~~~l------~~~~-~---~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~  250 (331)
T PHA01630        181 SNMLDPRL------FGLN-G---VKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLS  250 (331)
T ss_pred             Ccccchhh------cccc-c---eeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccC
Confidence            11111111      1331 1   24567889999999999999665 466779999999999999999765332221100


Q ss_pred             H---HHH-----------h-cCCCccccCCHHHHHHHHHHhcCC---HHHHHHHH
Q psy17691        632 S---QLA-----------T-LGCPELIARTHKEYQDIAIRLGTD---RDYCEKAL  668 (673)
Q Consensus       632 ~---~l~-----------~-~gl~~~ia~~~~~yv~~a~~la~d---~~~~~~~~  668 (673)
                      .   ++-           . -+..-++..+.++..+.++++..|   .+.++.+.
T Consensus       251 ~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~  305 (331)
T PHA01630        251 NLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLE  305 (331)
T ss_pred             CCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            0   000           0 011113344778888888888887   34444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.46  E-value=1.5e-05  Score=78.53  Aligned_cols=119  Identities=16%  Similarity=0.178  Sum_probs=93.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCCHH-
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQ-----------GYIEEATRLYLKALEVFPEFAA-  185 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~-----------g~~~eA~~~~~~al~~~p~~~~-  185 (673)
                      ..+..++..|++++|+..+++.++..|++   +.+++.+|.++..+           +...+|+..|+..++..|++.. 
T Consensus        47 ~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~  126 (203)
T PF13525_consen   47 MLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA  126 (203)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence            45567788999999999999999999987   45888888886654           3456899999999999999731 


Q ss_pred             ----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHH
Q psy17691        186 ----------------AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA---DAYSNMGNTLKEMQDIQGALQ  239 (673)
Q Consensus       186 ----------------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~  239 (673)
                                      --+..|..|.+.|.+..|+..++.+++..|+..   +++..++..|.++|..+.|..
T Consensus       127 ~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  127 EEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence                            224568889999999999999999999999975   578899999999999885543

>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis

Probab=98.45  E-value=1.6e-06  Score=92.66  Aligned_cols=107  Identities=15%  Similarity=0.147  Sum_probs=78.6

Q ss_pred             hhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc---chhhhHHHH
Q psy17691        557 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET---LASRVAASQ  633 (673)
Q Consensus       557 ~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~---~~~r~~~~~  633 (673)
                      .+.+++..+++   .++|.|.|..  +++...|..+|+++-+   +|++|++|||.+|+|||+.+-..   -.....+..
T Consensus       223 ~~~l~~~~~~~---~~~v~~~g~~--~~~~~~l~~ad~~v~~---sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~  294 (350)
T cd03785         223 LEEVKKAYEEL---GVNYEVFPFI--DDMAAAYAAADLVISR---AGASTVAELAALGLPAILIPLPYAADDHQTANARA  294 (350)
T ss_pred             HHHHHHHHhcc---CCCeEEeehh--hhHHHHHHhcCEEEEC---CCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHH
Confidence            35566666665   3789999987  6788888899999853   36789999999999999875322   112223455


Q ss_pred             HHhcCCCccccC---CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        634 LATLGCPELIAR---THKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       634 l~~~gl~~~ia~---~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      +...|..-++..   |.+++.+....+..|++.+++++...
T Consensus       295 l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~  335 (350)
T cd03785         295 LVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAA  335 (350)
T ss_pred             HHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            666676555542   79999999999999999999887653

It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.45  E-value=3.4e-06  Score=84.07  Aligned_cols=103  Identities=23%  Similarity=0.278  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF---ADAYSNMGN  226 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~  226 (673)
                      .++.|.-++..|+|.+|...|+.-++..|+.   +++++.||.+++.+|+|++|...|..+.+-.|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            5666666666777777777777777776665   5667777777777777777777777777765544   566777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691        227 TLKEMQDIQGALQCYSRAIQINPGFADAH  255 (673)
Q Consensus       227 ~~~~~g~~~eA~~~~~~Al~l~p~~~~a~  255 (673)
                      +..++|+.++|...|++.++..|+...+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            77777777777777777777777665554

>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.45  E-value=2.5e-06  Score=90.26  Aligned_cols=96  Identities=11%  Similarity=0.005  Sum_probs=71.4

Q ss_pred             hHHHHHHHcC-CCCCeEEeccCcChHHHHHhcccccEEecCC--CCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHH
Q psy17691        559 NIQATAQALG-LDQHRILFSNVAAKEEHVRRGQLADVCLDTP--LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA  635 (673)
Q Consensus       559 ~~~~~~~~~g-~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~--p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~  635 (673)
                      .+.....+.. + .++|.|.|.++..+....|..+|+++-|.  .++.|++++|||++|+|||+-.......      +-
T Consensus       211 ~~~~~~~~~~~~-~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e------~i  283 (335)
T cd03802         211 YFYREIAPELLD-GPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPE------VV  283 (335)
T ss_pred             HHHHHHHHhccc-CCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchh------he
Confidence            3444444443 4 38999999999999999999999998764  4688999999999999999876544332      11


Q ss_pred             hcCCCccccCCHHHHHHHHHHhcCCH
Q psy17691        636 TLGCPELIARTHKEYQDIAIRLGTDR  661 (673)
Q Consensus       636 ~~gl~~~ia~~~~~yv~~a~~la~d~  661 (673)
                      .-|...++..+.+++++....+..+.
T Consensus       284 ~~~~~g~l~~~~~~l~~~l~~l~~~~  309 (335)
T cd03802         284 EDGVTGFLVDSVEELAAAVARADRLD  309 (335)
T ss_pred             eCCCcEEEeCCHHHHHHHHHHHhccH
Confidence            22445677777899988888876544

aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.44  E-value=3.3e-06  Score=90.42  Aligned_cols=112  Identities=21%  Similarity=0.157  Sum_probs=104.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        155 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI  234 (673)
Q Consensus       155 ~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  234 (673)
                      .|-.++...+++++|+..+++..+.+|+   +...++.++...++..+|++.+.++++.+|.+...+...+..+.+.+++
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            3445666789999999999999998875   5667899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        235 QGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       235 ~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +.|++..++++++.|++...|+.|+.+|...|+++
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e  285 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE  285 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence            99999999999999999999999999999999987

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.44  E-value=2.9e-06  Score=80.74  Aligned_cols=99  Identities=19%  Similarity=0.136  Sum_probs=88.0

Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691        120 FSYIISVL-LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG  198 (673)
Q Consensus       120 ~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  198 (673)
                      ++..+.++ ..|-+.-|..-|.+++.+.|+-+++++.||..+...|+|+.|.+.|...++++|.+..++.|.|..++.-|
T Consensus        68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g  147 (297)
T COG4785          68 LFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG  147 (297)
T ss_pred             HHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecC
Confidence            33344444 48889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCH
Q psy17691        199 KLTDALLHYKEAIRIQPSFA  218 (673)
Q Consensus       199 ~~~eA~~~~~~al~~~p~~~  218 (673)
                      +++-|.+-+.+-.+.+|+++
T Consensus       148 R~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         148 RYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             chHhhHHHHHHHHhcCCCCh
Confidence            99999999988888888875

>KOG4340|consensus

Probab=98.42  E-value=2.8e-06  Score=84.34  Aligned_cols=144  Identities=20%  Similarity=0.146  Sum_probs=121.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691        126 VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALL  205 (673)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  205 (673)
                      +..-.+|++|++++..-.+.+|.+-..+..||.+|+...+|.+|..+|++.-++.|......+..+..+++.+.+..|+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            34556889999999888888898888888999999999999999999999999999888888888888888888887776


Q ss_pred             HHHHH----------HHh--------------------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        206 HYKEA----------IRI--------------------QP--SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       206 ~~~~a----------l~~--------------------~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                      .....          +++                    -|  ++++...+.|.+.++.|++++|.+-|+.|++...-++-
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl  179 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL  179 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence            54322          211                    23  45778899999999999999999999999999998899


Q ss_pred             HHHHHHHHHHHcCCCc
Q psy17691        254 AHSNLASIHKDSGKRG  269 (673)
Q Consensus       254 a~~~La~~~~~~g~~~  269 (673)
                      .-++++.++...|++.
T Consensus       180 lAYniALaHy~~~qya  195 (459)
T KOG4340|consen  180 LAYNLALAHYSSRQYA  195 (459)
T ss_pred             hHHHHHHHHHhhhhHH
Confidence            9999999999999886

>KOG4234|consensus

Probab=98.41  E-value=3.8e-06  Score=78.97  Aligned_cols=107  Identities=23%  Similarity=0.224  Sum_probs=94.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTH-----ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ  195 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  195 (673)
                      .-+..++..|+|++|...|..||+..|..     ...+.+.|.++.+++.++.|+....++++++|.+..++...|.+|.
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            34566788999999999999999999876     3478899999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNT  227 (673)
Q Consensus       196 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  227 (673)
                      +..+|++|++-|++.++.+|..-++.-....+
T Consensus       180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            99999999999999999999876555444433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.41  E-value=4.7e-06  Score=83.06  Aligned_cols=104  Identities=17%  Similarity=0.258  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q psy17691        119 TFSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLAS  192 (673)
Q Consensus       119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~  192 (673)
                      .|..+..++..|+|.+|...|+.-++..|+.   +++++.||.+++.+|++++|...|..+.+-.|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            5777788899999999999999999999986   7899999999999999999999999999998776   789999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        193 VLQQQGKLTDALLHYKEAIRIQPSFADAYS  222 (673)
Q Consensus       193 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  222 (673)
                      +...+|+.++|...|+++++..|+...+-.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            999999999999999999999999876554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.40  E-value=3.5e-06  Score=87.49  Aligned_cols=151  Identities=18%  Similarity=0.208  Sum_probs=111.4

Q ss_pred             hHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C----H
Q psy17691        118 TTFSYIISVLL-LIQVSEAEECYNTALRLCPT--H----ADSLNNLANIKREQGYIEEATRLYLKALEVFPE--F----A  184 (673)
Q Consensus       118 ~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~--~----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~----~  184 (673)
                      ..+..++..++ .+++++|..+|.++.+..-+  +    ...+...+.+|.+. ++++|+.+|++++.+.-.  .    .
T Consensus        36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA  114 (282)
T PF14938_consen   36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA  114 (282)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            34555555555 78999999999999887421  1    44667777777666 999999999999987422  2    5


Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q psy17691        185 AAHSNLASVLQQQ-GKLTDALLHYKEAIRIQPS--F----ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF------  251 (673)
Q Consensus       185 ~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~------  251 (673)
                      .++.++|.+|... |++++|+++|++|+++...  .    ..++.++|.++.++|+|++|++.|++.....-++      
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            6889999999999 9999999999999987321  1    4578899999999999999999999998753221      


Q ss_pred             -HHHHHHHHHHHHHcCCCc
Q psy17691        252 -ADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       252 -~~a~~~La~~~~~~g~~~  269 (673)
                       ...+...+.|+...|+..
T Consensus       195 ~~~~~l~a~l~~L~~~D~v  213 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYV  213 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHHHHHHcCCHH
Confidence             234556677888888764

>TIGR00215 lpxB lipid-A-disaccharide synthase

Probab=98.39  E-value=1.9e-06  Score=93.60  Aligned_cols=159  Identities=14%  Similarity=0.097  Sum_probs=108.3

Q ss_pred             ccccccCCCCCcEEEecC--Ccc---cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhh
Q psy17691        464 TSRQQYGLPEDAIVYCNF--NQL---YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIV  538 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~--~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (673)
                      ..|+++|++.+..+++.+  ++.   .|+.+.++++...+.+..|+.++++..                           
T Consensus       180 ~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~---------------------------  232 (385)
T TIGR00215       180 SAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPV---------------------------  232 (385)
T ss_pred             HHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEe---------------------------
Confidence            357788998776554433  244   467888899988988888998876543                           


Q ss_pred             hhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCcee
Q psy17691        539 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVV  618 (673)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvv  618 (673)
                                   .++...+.+++..+..|.. .+|.+.+.    +....|..+|+++-+.    |++|+|++++|+|+|
T Consensus       233 -------------~~~~~~~~~~~~~~~~~~~-~~v~~~~~----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~V  290 (385)
T TIGR00215       233 -------------VNFKRRLQFEQIKAEYGPD-LQLHLIDG----DARKAMFAADAALLAS----GTAALEAALIKTPMV  290 (385)
T ss_pred             -------------CCchhHHHHHHHHHHhCCC-CcEEEECc----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEE
Confidence                         1233344555655666663 56766543    2235778999998765    777789999999999


Q ss_pred             ecCCCcchhhhHHHHHH---hc----------CCCcccc--CCHHHHHHHHHHhcCCH----HHHHHHHhhh
Q psy17691        619 TLPGETLASRVAASQLA---TL----------GCPELIA--RTHKEYQDIAIRLGTDR----DYCEKALLYH  671 (673)
Q Consensus       619 t~~g~~~~~r~~~~~l~---~~----------gl~~~ia--~~~~~yv~~a~~la~d~----~~~~~~~~~~  671 (673)
                      ....-+..+...+..+-   .+          ..+|++-  .|++...+...+|.+|+    +.+++++...
T Consensus       291 v~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~  362 (385)
T TIGR00215       291 VGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFF  362 (385)
T ss_pred             EEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            88665555544444321   12          2355553  36888999999999999    8888887654

Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA

>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=98.38  E-value=2.3e-06  Score=95.80  Aligned_cols=157  Identities=17%  Similarity=0.028  Sum_probs=105.7

Q ss_pred             ccccccCCC--CCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691        464 TSRQQYGLP--EDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL  539 (673)
Q Consensus       464 ~~r~~~~l~--~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (673)
                      ..|+++|++  ++.+++++++|+.  |-.+.+++++.++.+.  +.+|+++|.                           
T Consensus       283 ~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~---------------------------  333 (476)
T cd03791         283 ALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGS---------------------------  333 (476)
T ss_pred             HHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEec---------------------------
Confidence            357888986  7778888888775  8888899999988764  388888871                           


Q ss_pred             hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCcee
Q psy17691        540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVV  618 (673)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvv  618 (673)
                                  .+...++.+++...+.   .++++|.+..+.+.....|..+|++|-|. -++-|.+.+|||++|+|||
T Consensus       334 ------------g~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI  398 (476)
T cd03791         334 ------------GDPEYEEALRELAARY---PGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPI  398 (476)
T ss_pred             ------------CCHHHHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCE
Confidence                        0111234455544444   47888776666666677899999998765 4577899999999999999


Q ss_pred             ecCCCcchhhhHHHHHHhcCC------Ccccc--CCHHHHHHHHHHhc---CCHHHHHHHHhh
Q psy17691        619 TLPGETLASRVAASQLATLGC------PELIA--RTHKEYQDIAIRLG---TDRDYCEKALLY  670 (673)
Q Consensus       619 t~~g~~~~~r~~~~~l~~~gl------~~~ia--~~~~~yv~~a~~la---~d~~~~~~~~~~  670 (673)
                      +.....+..     ++.. |-      ..++.  .+.+++.+...++.   .+++.+.+++..
T Consensus       399 ~~~~gg~~e-----~v~~-~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~  455 (476)
T cd03791         399 VRATGGLAD-----TVID-YNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRN  455 (476)
T ss_pred             ECcCCCccc-----eEeC-CcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            765433322     0111 11      23332  36777776666544   577887777654

Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.

>KOG4648|consensus

Probab=98.38  E-value=1.2e-06  Score=88.47  Aligned_cols=108  Identities=16%  Similarity=0.103  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691        119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG  198 (673)
Q Consensus       119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  198 (673)
                      .-..+..++++|.|++|+.||.+++..+|.++-.+.+.+..|+++.+|..|...++.|+.++.....+|...+..-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            34566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        199 KLTDALLHYKEAIRIQPSFADAYSNMGN  226 (673)
Q Consensus       199 ~~~eA~~~~~~al~~~p~~~~~~~~lg~  226 (673)
                      +..+|.+-|+.+|++.|++.+..-.++.
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~  207 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLAR  207 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence            9999999999999999997665544443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.37  E-value=3.7e-06  Score=78.47  Aligned_cols=106  Identities=21%  Similarity=0.298  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAI  211 (673)
Q Consensus       132 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  211 (673)
                      ++.|.+.++.....+|.+++.+++.|.++.++.++...-+                        ...-+++|+.-|++||
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~e------------------------s~~miedAisK~eeAL   62 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPE------------------------SKKMIEDAISKFEEAL   62 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHH------------------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcch------------------------HHHHHHHHHHHHHHHH
Confidence            6667777777777777777777777776665533311000                        0012345555666666


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        212 RIQPSFADAYSNMGNTLKEMQD-----------IQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       212 ~~~p~~~~~~~~lg~~~~~~g~-----------~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      .++|+..++++++|++|..++.           |++|..+|++|...+|++...+..|..+
T Consensus        63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            6666666666666666655433           6778888888888888887766666443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.36  E-value=1.1e-05  Score=73.08  Aligned_cols=104  Identities=23%  Similarity=0.279  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q psy17691        151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA---DAYSNM  224 (673)
Q Consensus       151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l  224 (673)
                      ..++.-|.-.++.|+|++|++.|+......|..   ..+...++.+|+..+++++|+..+++-++++|+++   .+++..
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            344555555555555555555555555554433   34555555555555555555555555555555543   345555


Q ss_pred             HHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHH
Q psy17691        225 GNTLKEMQD---------------IQGALQCYSRAIQINPGFADA  254 (673)
Q Consensus       225 g~~~~~~g~---------------~~eA~~~~~~Al~l~p~~~~a  254 (673)
                      |.++.++..               ..+|...|++.++..|++..+
T Consensus        91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            555555444               667888888888888876543

>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor

Probab=98.35  E-value=1.2e-06  Score=97.22  Aligned_cols=154  Identities=14%  Similarity=0.054  Sum_probs=101.2

Q ss_pred             cCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccC----eeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691        469 YGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPN----SILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV  542 (673)
Q Consensus       469 ~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (673)
                      .++..+..++++++|+.  |..+..++++.+++++.|+    .+|++++.+..+                          
T Consensus       258 ~~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g--------------------------  311 (460)
T cd03788         258 RERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRT--------------------------  311 (460)
T ss_pred             HHhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCc--------------------------
Confidence            45566777888888775  8899999999999999997    467766622111                          


Q ss_pred             CchhhhhccCChhhhhhHHHHHH----Hc----CCC-CCeEE-eccCcChHHHHHhcccccEEecC-CCCCCcchhhhhh
Q psy17691        543 PNSILWLLKFPAVGEANIQATAQ----AL----GLD-QHRIL-FSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVL  611 (673)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~----~~----g~~-~~rv~-~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal  611 (673)
                                .++....+++.+.    +.    |.. -..|+ |.|.++.++..++|+.+||++-| .-++-|.|.+|||
T Consensus       312 ----------~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAm  381 (460)
T cd03788         312 ----------DVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYV  381 (460)
T ss_pred             ----------CcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeE
Confidence                      1222233333333    22    311 12354 45788999999999999999775 4667799999999


Q ss_pred             hcCCc----eeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCH-HHHHHH
Q psy17691        612 WTGTP----VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR-DYCEKA  667 (673)
Q Consensus       612 ~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~-~~~~~~  667 (673)
                      ++|+|    ||+-...      |.+-.   |-+.++.  .|.+++.+...++.+++ +.++.+
T Consensus       382 a~g~p~~g~vV~S~~~------G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~  435 (460)
T cd03788         382 ACQDDDPGVLILSEFA------GAAEE---LSGALLVNPYDIDEVADAIHRALTMPLEERRER  435 (460)
T ss_pred             EEecCCCceEEEeccc------cchhh---cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999    4442210      11111   3445554  48899999888888755 454444

It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.

>KOG3785|consensus

Probab=98.35  E-value=1.1e-05  Score=81.83  Aligned_cols=145  Identities=18%  Similarity=0.053  Sum_probs=110.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------hCC----
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALE--------------VFP----  181 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~--------------~~p----  181 (673)
                      ...+.+++.+|+|++|+..|+-+.+.+.-+.+.+.+||.+++-+|.|.+|.....++-+              ++.    
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~  140 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI  140 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence            35566778899999999999998887777788999999999999999999887666521              111    


Q ss_pred             --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        182 --------EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       182 --------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                              +..+-...|+.+.+..-.|++|++.|++.+.-+|+....-.+++.||.++.-++-+.+.+.--++..|+..-
T Consensus       141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti  220 (557)
T KOG3785|consen  141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI  220 (557)
T ss_pred             HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence                    112334556666677778888888888888888887777788888888888888888888888888888877


Q ss_pred             HHHHHHHHHHH
Q psy17691        254 AHSNLASIHKD  264 (673)
Q Consensus       254 a~~~La~~~~~  264 (673)
                      +..-++..+.+
T Consensus       221 A~NLkacn~fR  231 (557)
T KOG3785|consen  221 AKNLKACNLFR  231 (557)
T ss_pred             HHHHHHHHHhh
Confidence            76665555443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.34  E-value=6.1e-07  Score=73.62  Aligned_cols=64  Identities=34%  Similarity=0.575  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQ-------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      ..++.++|.+|..+|++++|+.+|++++++.       |..+.++.++|.++..+|++++|++++++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3455666666666666666666666666541       112345667777777777777777777776654

...

>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase

Probab=98.32  E-value=4.2e-06  Score=89.40  Aligned_cols=106  Identities=20%  Similarity=0.251  Sum_probs=76.5

Q ss_pred             hhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcch--hhhHHHHHH
Q psy17691        558 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLA--SRVAASQLA  635 (673)
Q Consensus       558 ~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~--~r~~~~~l~  635 (673)
                      +.+++..++.|+ .+++.|..    .++...|..+|+++-+   +|++|++|||++|+|||+.+-+...  .+....++.
T Consensus       222 ~~l~~~~~~~~l-~~~v~~~~----~~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~  293 (348)
T TIGR01133       222 EKVKNVYQELGI-EAIVTFID----ENMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLE  293 (348)
T ss_pred             HHHHHHHhhCCc-eEEecCcc----cCHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHH
Confidence            567787888887 36666762    2667778899999853   4678999999999999987533222  233345676


Q ss_pred             hcCCCcccc-C--CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        636 TLGCPELIA-R--THKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       636 ~~gl~~~ia-~--~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ..|..-++- .  +.+++.+...++..|++.+++++...
T Consensus       294 ~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~  332 (348)
T TIGR01133       294 DLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAA  332 (348)
T ss_pred             HCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            655544442 2  48999999999999999999887654

RL J Bacteriol 1993 Mar;175(6):1841-3

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.31  E-value=0.00022  Score=68.83  Aligned_cols=126  Identities=33%  Similarity=0.421  Sum_probs=100.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCH
Q psy17691        125 SVLLLIQVSEAEECYNTALRLCP---THADSLNNLANIKREQGYIEEATRLYLKALEVFPE-FAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~  200 (673)
                      .+...|++++|...+++++...|   .........+..+...+++++|+..+.+++...+. ....+..++..+...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            56678888888888888877666   35566666677777788888888888888888888 688888888888888888


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG  250 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~  250 (673)
                      ++|+..+.+++...|.....+..++..+...+.++++...+.++++..|.
T Consensus       219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            88888888888888876677777777777777788888888888888776

>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional

Probab=98.30  E-value=5.9e-06  Score=88.79  Aligned_cols=106  Identities=16%  Similarity=0.190  Sum_probs=77.4

Q ss_pred             hhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc---chhhhHHHHH
Q psy17691        558 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET---LASRVAASQL  634 (673)
Q Consensus       558 ~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~---~~~r~~~~~l  634 (673)
                      +.+.+..+ +|+.   |.|.|..  +++...|..+|+++-+   +|++|++|||++|+|||+.+...   -.....+..+
T Consensus       225 ~~~~~~~~-~~~~---v~~~g~~--~~~~~~~~~~d~~i~~---~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i  295 (357)
T PRK00726        225 EEVRAAYA-AGIN---AEVVPFI--DDMAAAYAAADLVICR---AGASTVAELAAAGLPAILVPLPHAADDHQTANARAL  295 (357)
T ss_pred             HHHHHHhh-cCCc---EEEeehH--hhHHHHHHhCCEEEEC---CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHH
Confidence            44555555 7773   9999987  5777888899999853   36789999999999999986431   1122234556


Q ss_pred             HhcCCCcccc-CC--HHHHHHHHHHhcCCHHHHHHHHhhhc
Q psy17691        635 ATLGCPELIA-RT--HKEYQDIAIRLGTDRDYCEKALLYHE  672 (673)
Q Consensus       635 ~~~gl~~~ia-~~--~~~yv~~a~~la~d~~~~~~~~~~~~  672 (673)
                      ...|..-++. .+  ++++.+...++..|++.++++++...
T Consensus       296 ~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~  336 (357)
T PRK00726        296 VDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAAR  336 (357)
T ss_pred             HHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            6667654443 23  89999999999999999999887543

>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc)

Probab=98.30  E-value=3.2e-06  Score=90.97  Aligned_cols=151  Identities=12%  Similarity=0.093  Sum_probs=105.8

Q ss_pred             ccccCCCCCcEEEecCCcc-----cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhh
Q psy17691        466 RQQYGLPEDAIVYCNFNQL-----YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLK  540 (673)
Q Consensus       466 r~~~~l~~~~~~~~~~~~~-----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (673)
                      |+.+|++++.++++++++.     .|..+.+++++.++...  +.++++.+                             
T Consensus       190 ~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~-----------------------------  238 (363)
T cd03786         190 LELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPN-----------------------------  238 (363)
T ss_pred             hhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEEC-----------------------------
Confidence            3467887777666666654     46677788888776543  44444433                             


Q ss_pred             ccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeec
Q psy17691        541 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL  620 (673)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~  620 (673)
                                  ++...+.+++...+.|...++|.|.+.....++..+|..+|+++-+.   | +.+.||+++|+|||+.
T Consensus       239 ------------~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~S---g-gi~~Ea~~~g~PvI~~  302 (363)
T cd03786         239 ------------HPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDS---G-GIQEEASFLGVPVLNL  302 (363)
T ss_pred             ------------CCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcC---c-cHHhhhhhcCCCEEee
Confidence                        23345677887788887447899999888888888899999996443   3 3579999999999997


Q ss_pred             CCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHH
Q psy17691        621 PGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKAL  668 (673)
Q Consensus       621 ~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~  668 (673)
                      ...+     ....+...|..-++..+.++.++....+..|+..+..++
T Consensus       303 ~~~~-----~~~~~~~~g~~~~~~~~~~~i~~~i~~ll~~~~~~~~~~  345 (363)
T cd03786         303 RDRT-----ERPETVESGTNVLVGTDPEAILAAIEKLLSDEFAYSLMS  345 (363)
T ss_pred             CCCC-----ccchhhheeeEEecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence            6421     111233456655555578999998889999998887764

The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st

>KOG4555|consensus

Probab=98.29  E-value=3.2e-05  Score=67.86  Aligned_cols=94  Identities=26%  Similarity=0.268  Sum_probs=61.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Q psy17691        156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF----ADAYSNMGNTLKEM  231 (673)
Q Consensus       156 Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~lg~~~~~~  231 (673)
                      -|..+.+.|+.+.|++.|.+++.+.|..+.+|+|.+..+.-+|+.++|++-+++++++....    ..++...|.+|..+
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            35555566666666666666666666666666666666666666666666666666664332    24566677777777


Q ss_pred             CCHHHHHHHHHHHHHhCC
Q psy17691        232 QDIQGALQCYSRAIQINP  249 (673)
Q Consensus       232 g~~~eA~~~~~~Al~l~p  249 (673)
                      |+-+.|...|+.|-++..
T Consensus       129 g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLGS  146 (175)
T ss_pred             CchHHHHHhHHHHHHhCC
Confidence            777777777777666543

>KOG3081|consensus

Probab=98.28  E-value=0.00024  Score=70.16  Aligned_cols=138  Identities=14%  Similarity=0.084  Sum_probs=115.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCC
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ----QGK  199 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~  199 (673)
                      ..+...+++++|+....+.     .+.++...--.++.++.+++-|.+.+++..+++.+..  +..||..+.+    .++
T Consensus       116 ~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--LtQLA~awv~la~ggek  188 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--LTQLAQAWVKLATGGEK  188 (299)
T ss_pred             HHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH--HHHHHHHHHHHhccchh
Confidence            4455688999999887773     4566666777889999999999999999999877643  3334444432    356


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        200 LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       200 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      +.+|.-+|++.-+..|..+...+..+.|+..+|++++|...++.+|..++++++.+.|+..+-...|+-
T Consensus       189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            899999999998877888999999999999999999999999999999999999999999988888875

>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds

Probab=98.27  E-value=4.1e-06  Score=90.69  Aligned_cols=130  Identities=17%  Similarity=0.065  Sum_probs=87.5

Q ss_pred             CcEEEecCCccc-ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        474 DAIVYCNFNQLY-KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       474 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      +.+++|.++++. |..   +++...+.+..|+..|+|+|.                                        
T Consensus       204 ~~~~i~y~G~l~~~~d---~~ll~~la~~~p~~~~vliG~----------------------------------------  240 (373)
T cd04950         204 PRPVIGYYGAIAEWLD---LELLEALAKARPDWSFVLIGP----------------------------------------  240 (373)
T ss_pred             CCCEEEEEeccccccC---HHHHHHHHHHCCCCEEEEECC----------------------------------------
Confidence            455666667666 444   455566777889999999981                                        


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCC------CCcchhhhhhhcCCceeecCCCcch
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC------NGHTTSMDVLWTGTPVVTLPGETLA  626 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~------~g~~t~~eal~~GvPvvt~~g~~~~  626 (673)
                       +.......   ....  .++|.|+|..++++....++.+||++-||-.      +-++.++|+|++|+|||+...+   
T Consensus       241 -~~~~~~~~---~~~~--~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~---  311 (373)
T cd04950         241 -VDVSIDPS---ALLR--LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP---  311 (373)
T ss_pred             -CcCccChh---Hhcc--CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcH---
Confidence             10000011   1111  3789999999999999999999999988742      2367899999999999986432   


Q ss_pred             hhhHHHHHHhcCCCccccCCHHHHHHHHHHh-cCC
Q psy17691        627 SRVAASQLATLGCPELIARTHKEYQDIAIRL-GTD  660 (673)
Q Consensus       627 ~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~l-a~d  660 (673)
                           .+....+-.-+++.|.+++++...+. ..+
T Consensus       312 -----~~~~~~~~~~~~~~d~~~~~~ai~~~l~~~  341 (373)
T cd04950         312 -----EVRRYEDEVVLIADDPEEFVAAIEKALLED  341 (373)
T ss_pred             -----HHHhhcCcEEEeCCCHHHHHHHHHHHHhcC
Confidence                 22222232224566899999999884 444

The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.27  E-value=2.6e-05  Score=70.69  Aligned_cols=104  Identities=18%  Similarity=0.112  Sum_probs=92.1

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy17691        117 GTTFSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNL  190 (673)
Q Consensus       117 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l  190 (673)
                      ...+..+...+..|+|++|++.|+.+....|..   ..+...|+.+|++.+++++|+..+++-++++|.+   ..+++..
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            345566778889999999999999999998764   6789999999999999999999999999999988   4678999


Q ss_pred             HHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHH
Q psy17691        191 ASVLQQQGK---------------LTDALLHYKEAIRIQPSFADA  220 (673)
Q Consensus       191 a~~~~~~g~---------------~~eA~~~~~~al~~~p~~~~~  220 (673)
                      |.+++.+..               ..+|...|++.++..|++..+
T Consensus        91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            999988876               889999999999999997643

>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase

Probab=98.27  E-value=9.8e-06  Score=87.41  Aligned_cols=151  Identities=14%  Similarity=0.149  Sum_probs=103.3

Q ss_pred             cccccCCCCCcEEEecCCcc---cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691        465 SRQQYGLPEDAIVYCNFNQL---YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA  541 (673)
Q Consensus       465 ~r~~~~l~~~~~~~~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (673)
                      .++++|. .+.++++++++.   .|..+.+++++.++.++.|+.++++.+.+                            
T Consensus       189 ~~~~~~~-~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~----------------------------  239 (365)
T TIGR00236       189 VLSEFGE-DKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHL----------------------------  239 (365)
T ss_pred             HHHhcCC-CCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCC----------------------------
Confidence            3455663 334566666543   36678889999999888898888775411                            


Q ss_pred             cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecC
Q psy17691        542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP  621 (673)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~  621 (673)
                                 +......+.   +..|. .++|.|.+.++..+++..+..+|+++-+.   |+ .++||+++|+|||+..
T Consensus       240 -----------~~~~~~~~~---~~~~~-~~~v~~~~~~~~~~~~~~l~~ad~vv~~S---g~-~~~EA~a~g~PvI~~~  300 (365)
T TIGR00236       240 -----------NPVVREPLH---KHLGD-SKRVHLIEPLEYLDFLNLAANSHLILTDS---GG-VQEEAPSLGKPVLVLR  300 (365)
T ss_pred             -----------ChHHHHHHH---HHhCC-CCCEEEECCCChHHHHHHHHhCCEEEECC---hh-HHHHHHHcCCCEEECC
Confidence                       111112222   23455 36899999999999999999999996432   43 4799999999999974


Q ss_pred             --CCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        622 --GETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       622 --g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                        |...-      +. ..|..-++..+.++..+...++..|++.+++++..
T Consensus       301 ~~~~~~e------~~-~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~~  344 (365)
T TIGR00236       301 DTTERPE------TV-EAGTNKLVGTDKENITKAAKRLLTDPDEYKKMSNA  344 (365)
T ss_pred             CCCCChH------HH-hcCceEEeCCCHHHHHHHHHHHHhChHHHHHhhhc
Confidence              32211      12 23444455568999999888999999999888653

Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.26  E-value=8.1e-05  Score=69.48  Aligned_cols=140  Identities=22%  Similarity=0.221  Sum_probs=121.3

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691        128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALE-VFPEFAAAHSNLASVLQQQGKLTDALLH  206 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~eA~~~  206 (673)
                      +.=+.+.+..-..+.++..|.. .-.+.||+.+.+.|++.||...|++++. +.-+++..+..+++..+..+++.+|...
T Consensus        68 q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t  146 (251)
T COG4700          68 QKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT  146 (251)
T ss_pred             HhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence            3446777777777777777764 4577899999999999999999999986 4678899999999999999999999999


Q ss_pred             HHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        207 YKEAIRIQPS--FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       207 ~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +++..+.+|.  .++.+..+|.+|..+|++.+|...|+.++...|+ +.+...++..+.++|+..
T Consensus       147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~  210 (251)
T COG4700         147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLR  210 (251)
T ss_pred             HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchh
Confidence            9999999886  4678889999999999999999999999999987 677788889999999753

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.26  E-value=9e-06  Score=75.92  Aligned_cols=56  Identities=25%  Similarity=0.347  Sum_probs=36.0

Q ss_pred             HHhcCCCChhHHH-HHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        109 CYALSPDDGTTFS-YIISVLLL----------IQVSEAEECYNTALRLCPTHADSLNNLANIKREQG  164 (673)
Q Consensus       109 ~~~l~p~~~~~~~-~~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g  164 (673)
                      ....+|.+.+.+. .++.++.+          .-+++|+.-|++|+.++|+..++++++|++|..++
T Consensus        17 ~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen   17 AYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            4567999988774 44454432          24567777778888888888888888888877654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.25  E-value=0.00053  Score=66.17  Aligned_cols=155  Identities=31%  Similarity=0.376  Sum_probs=129.5

Q ss_pred             CCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHH
Q psy17691        114 PDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLAN-IKREQGYIEEATRLYLKALEVFP---EFAAAHS  188 (673)
Q Consensus       114 p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~-~~~~~g~~~eA~~~~~~al~~~p---~~~~~~~  188 (673)
                      +.....+... ......+++.+++..+.+++...+.........+. ++...|++++|...+++++...|   .......
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  171 (291)
T COG0457          92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL  171 (291)
T ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHH
Confidence            3344444333 44455788999999999999988887666666666 89999999999999999999777   4567777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAIRIQPS-FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK  267 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~  267 (673)
                      ..+..+...+++++|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|.....+..++..+...+.
T Consensus       172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (291)
T COG0457         172 ALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR  251 (291)
T ss_pred             HhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC
Confidence            7888888999999999999999999999 799999999999999999999999999999999977777777777775553


Q ss_pred             C
Q psy17691        268 R  268 (673)
Q Consensus       268 ~  268 (673)
                      .
T Consensus       252 ~  252 (291)
T COG0457         252 Y  252 (291)
T ss_pred             H
Confidence            3

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.24  E-value=1.3e-06  Score=71.66  Aligned_cols=67  Identities=36%  Similarity=0.501  Sum_probs=56.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVF---P----EFAAAHSNLASVLQQQGKLTDALLHYKEAIRI  213 (673)
Q Consensus       147 p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  213 (673)
                      |+-..++.++|.+|..+|++++|+.+|++++++.   +    ....++.++|.++..+|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3446788999999999999999999999999762   1    22568899999999999999999999999876

...

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.21  E-value=0.00011  Score=89.10  Aligned_cols=143  Identities=14%  Similarity=0.122  Sum_probs=69.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHH----HHHHH
Q psy17691        126 VLLLIQVSEAEECYNTALRLCPT-----HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHS----NLASV  193 (673)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~----~la~~  193 (673)
                      ++..|++++|...+++++.....     ...++..+|.++...|++++|...++++..+....   .....    .....
T Consensus       583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  662 (903)
T PRK04841        583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY  662 (903)
T ss_pred             HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence            34456666666666655554221     13334445555556666666666665555442211   00000    01122


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHH
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFA----DAYSNMGNTLKEMQDIQGALQCYSRAIQINP------GFADAHSNLASIHK  263 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p------~~~~a~~~La~~~~  263 (673)
                      +...|+.++|...+.+.....+...    ..+..+|.++...|++++|...+++++....      ....++..+|.++.
T Consensus       663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~  742 (903)
T PRK04841        663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW  742 (903)
T ss_pred             HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            3335555555555544333211111    1134566666666777777776666665421      12234555666666


Q ss_pred             HcCCC
Q psy17691        264 DSGKR  268 (673)
Q Consensus       264 ~~g~~  268 (673)
                      ..|+.
T Consensus       743 ~~G~~  747 (903)
T PRK04841        743 QQGRK  747 (903)
T ss_pred             HcCCH
Confidence            66654

>KOG1586|consensus

Probab=98.20  E-value=0.00026  Score=68.54  Aligned_cols=140  Identities=18%  Similarity=0.208  Sum_probs=108.7

Q ss_pred             ChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC-----
Q psy17691        116 DGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHA------DSLNNLANIKREQ-GYIEEATRLYLKALEVFPEF-----  183 (673)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~Lg~~~~~~-g~~~eA~~~~~~al~~~p~~-----  183 (673)
                      .+..|.-+..+++..+.++|+.++++++++..+-.      ..+..+|.+|... .++++|+.+|+++-+.....     
T Consensus        73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss  152 (288)
T KOG1586|consen   73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS  152 (288)
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence            35566777888888899999999999999976543      3455889998876 89999999999998775443     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691        184 -AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA-------DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH  255 (673)
Q Consensus       184 -~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~  255 (673)
                       ...+...+..-...++|.+|+..|++.....-++.       +.+..-|.|+.-..+.-.+...+++-.+++|...+..
T Consensus       153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR  232 (288)
T KOG1586|consen  153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR  232 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence             34455566777788999999999999888766653       2445667777777888888888888888999876543

>KOG4555|consensus

Probab=98.15  E-value=6.9e-05  Score=65.82  Aligned_cols=95  Identities=27%  Similarity=0.244  Sum_probs=85.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcC
Q psy17691        123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----AAAHSNLASVLQQQG  198 (673)
Q Consensus       123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g  198 (673)
                      +..+...|+.+.|++.|.+++.+.|+.+.+|++.+..+.-+|+.++|++.+++++++.-..    ..++...|.+|..+|
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            3445568999999999999999999999999999999999999999999999999996554    457888999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q psy17691        199 KLTDALLHYKEAIRIQPSF  217 (673)
Q Consensus       199 ~~~eA~~~~~~al~~~p~~  217 (673)
                      +-+.|..-|+.+-++....
T Consensus       130 ~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             chHHHHHhHHHHHHhCCHH
Confidence            9999999999988876554

>KOG1915|consensus

Probab=98.13  E-value=0.0002  Score=75.52  Aligned_cols=130  Identities=18%  Similarity=0.197  Sum_probs=65.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK  208 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  208 (673)
                      +.+...|.+.+-.|+-..|.+ ..+...-.+-.++++++.....|++-++..|.+..+|...|.+-..+|+.+.|...|+
T Consensus       417 q~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife  495 (677)
T KOG1915|consen  417 QLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE  495 (677)
T ss_pred             HcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            445555555555555555543 2333333444455555555555555555555555555555555555555555555555


Q ss_pred             HHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        209 EAIRIQPSFAD--AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS  260 (673)
Q Consensus       209 ~al~~~p~~~~--~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~  260 (673)
                      -|+....-+..  .|-..-..-...|.+++|...|++.|+..+... .|...|.
T Consensus       496 lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~  548 (677)
T KOG1915|consen  496 LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAK  548 (677)
T ss_pred             HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence            55554322211  222333333445555555555555555544433 4444444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.10  E-value=0.00066  Score=67.33  Aligned_cols=151  Identities=13%  Similarity=0.074  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q psy17691        119 TFSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA---AAHSNLAS  192 (673)
Q Consensus       119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~  192 (673)
                      .+..+...+..|++++|+..|+.+...+|..   ..+...++.++++.+++++|+...++-+++.|.++   .+++..|.
T Consensus        37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL  116 (254)
T COG4105          37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL  116 (254)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence            3456677788999999999999999998765   56899999999999999999999999999999874   46777777


Q ss_pred             HHHHc--------CCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        193 VLQQQ--------GKLTDALLHYKEAIRIQPSFAD-----------------AYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       193 ~~~~~--------g~~~eA~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      +++..        .-..+|+..+++.++..|++.-                 .-..+|..|.+.|.+..|+..++.+++-
T Consensus       117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~  196 (254)
T COG4105         117 SYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN  196 (254)
T ss_pred             HHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            76543        2356788899999999998631                 2346788999999999999999999998


Q ss_pred             CCCC---HHHHHHHHHHHHHcCCCc
Q psy17691        248 NPGF---ADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       248 ~p~~---~~a~~~La~~~~~~g~~~  269 (673)
                      -|+.   .+++..+..+|..+|-.+
T Consensus       197 y~~t~~~~eaL~~l~eaY~~lgl~~  221 (254)
T COG4105         197 YPDTSAVREALARLEEAYYALGLTD  221 (254)
T ss_pred             cccccchHHHHHHHHHHHHHhCChH
Confidence            7665   456777788888888766

>KOG1915|consensus

Probab=98.09  E-value=0.00067  Score=71.75  Aligned_cols=159  Identities=17%  Similarity=0.178  Sum_probs=128.8

Q ss_pred             HhcCCCChhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHH-HHHcCCHHHHHHHHHHHHh
Q psy17691        110 YALSPDDGTTFSYIISVL-LLIQVSEAEECYNTALRLCPTHAD---------SLNNLANI-KREQGYIEEATRLYLKALE  178 (673)
Q Consensus       110 ~~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~---------a~~~Lg~~-~~~~g~~~eA~~~~~~al~  178 (673)
                      ...+|.+-++|.....+. ..|+.+.-.+.|++|+..-|...+         .|.+.+.. -....+.+.+.+.|+.+++
T Consensus       315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~  394 (677)
T KOG1915|consen  315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD  394 (677)
T ss_pred             HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            356788888886554444 478999999999999998776432         33333322 2356889999999999999


Q ss_pred             hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691        179 VFPEF----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA  254 (673)
Q Consensus       179 ~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a  254 (673)
                      +-|..    +..|...|....++.+...|.+.+-.|+-..|.+ ...-..-.+-.++++++.....|++-|+..|.+..+
T Consensus       395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~  473 (677)
T KOG1915|consen  395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA  473 (677)
T ss_pred             hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence            98864    7889999999999999999999999999999985 444555566778899999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q psy17691        255 HSNLASIHKDSGKRG  269 (673)
Q Consensus       255 ~~~La~~~~~~g~~~  269 (673)
                      |...|.+-..+|+.+
T Consensus       474 W~kyaElE~~Lgdtd  488 (677)
T KOG1915|consen  474 WSKYAELETSLGDTD  488 (677)
T ss_pred             HHHHHHHHHHhhhHH
Confidence            999999999998865

>KOG2796|consensus

Probab=98.06  E-value=7.9e-05  Score=73.12  Aligned_cols=141  Identities=19%  Similarity=0.219  Sum_probs=118.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----C--CCCHHHHHHHHHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLC-PTHADSLNNLANIKREQGYIEEATRLYLKALEV----F--PEFAAAHSNLASV  193 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~----~--p~~~~~~~~la~~  193 (673)
                      .++++++..|+|.-.+..+.+.++.+ |..+.....||.+..+.|+.+.|..+|++.-+.    +  .....+..+.+.+
T Consensus       182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i  261 (366)
T KOG2796|consen  182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL  261 (366)
T ss_pred             HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence            33455556889999999999999998 667888999999999999999999999955433    2  2345677888999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA---DAHSNLASI  261 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~---~a~~~La~~  261 (673)
                      +.-++++.+|...|.+++..+|.++.+.++.|.|+...|+..+|++..+.+++..|...   ....||-.+
T Consensus       262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm  332 (366)
T KOG2796|consen  262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTM  332 (366)
T ss_pred             eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999753   334455443

>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]

Probab=98.03  E-value=5.4e-05  Score=83.71  Aligned_cols=153  Identities=19%  Similarity=0.181  Sum_probs=98.9

Q ss_pred             cccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCe----eEEeeccCCcCCCCCCCCcccccCCCCccchhh
Q psy17691        465 SRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNS----ILWLLKFPAVGEANISRPLFRPRLRPSASTSIV  538 (673)
Q Consensus       465 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (673)
                      .|+.++   +..++++++|+.  |..+..++++.++++..|+.    +|++++.|..+                      
T Consensus       252 lr~~~~---~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg----------------------  306 (456)
T TIGR02400       252 LRESLK---GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRG----------------------  306 (456)
T ss_pred             HHHHcC---CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCcc----------------------
Confidence            455553   567788888776  88999999999999999974    46666522111                      


Q ss_pred             hhccCchhhhhccCChhhhhhHHHHHHHc--------CC-C-CCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchh
Q psy17691        539 LKAVPNSILWLLKFPAVGEANIQATAQAL--------GL-D-QHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTS  607 (673)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~-~-~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~  607 (673)
                                    .+...+.+++.+++.        |- + ..-+.|.+..+.++..++|+.+||++-|. -.+=|.|.
T Consensus       307 --------------~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~  372 (456)
T TIGR02400       307 --------------DVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVA  372 (456)
T ss_pred             --------------CchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccH
Confidence                          123344555555443        21 1 11234456788999999999999997765 55669999


Q ss_pred             hhhhhcCCc----eeecC-CCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcC-CHHHHHH
Q psy17691        608 MDVLWTGTP----VVTLP-GETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT-DRDYCEK  666 (673)
Q Consensus       608 ~eal~~GvP----vvt~~-g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~-d~~~~~~  666 (673)
                      +|||++|+|    ||.-. +.. .     ..+   + ..++.  .|.++..+...++.+ +++.+.+
T Consensus       373 lEamA~g~P~~g~vVlS~~~G~-~-----~~l---~-~gllVnP~d~~~lA~aI~~aL~~~~~er~~  429 (456)
T TIGR02400       373 KEYVAAQDPKDGVLILSEFAGA-A-----QEL---N-GALLVNPYDIDGMADAIARALTMPLEEREE  429 (456)
T ss_pred             HHHHHhcCCCCceEEEeCCCCC-h-----HHh---C-CcEEECCCCHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999    55432 211 1     112   2 34443  477888777767665 4455443

This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.01  E-value=1.7e-05  Score=75.58  Aligned_cols=105  Identities=19%  Similarity=0.159  Sum_probs=99.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL  228 (673)
Q Consensus       149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  228 (673)
                      .+..++..|..|-..|-+.-|.-.|.+++.+.|+.+.+++.||..+...|+++.|.+.|...++++|.+-.++.|.|..+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            35577788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        229 KEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       229 ~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                      ..-|++.-|.+.+.+-.+.+|+++-
T Consensus       144 YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         144 YYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             eecCchHhhHHHHHHHHhcCCCChH
Confidence            9999999999999999999999874

>KOG4642|consensus

Probab=98.00  E-value=1.4e-05  Score=77.37  Aligned_cols=91  Identities=18%  Similarity=0.187  Sum_probs=56.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17691        157 ANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQG  236 (673)
Q Consensus       157 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e  236 (673)
                      |+.|+...+|..|+.+|.+++.++|..+..|.|.+.++++.++++.+....++++++.|+....++.+|.++.+...+++
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence            44444455566666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHh
Q psy17691        237 ALQCYSRAIQI  247 (673)
Q Consensus       237 A~~~~~~Al~l  247 (673)
                      |+..+++|..+
T Consensus        97 aI~~Lqra~sl  107 (284)
T KOG4642|consen   97 AIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHH
Confidence            66666666443

>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds

Probab=97.99  E-value=3.4e-05  Score=76.07  Aligned_cols=107  Identities=14%  Similarity=0.015  Sum_probs=78.8

Q ss_pred             EEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhh
Q psy17691        477 VYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVG  556 (673)
Q Consensus       477 ~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (673)
                      .+|.++ ..|..+..++++.++.++.|+.++++++.                                         +..
T Consensus       109 ~~g~~~-~~k~~~~~~~a~~~l~~~~~~~~~~i~G~-----------------------------------------~~~  146 (229)
T cd01635         109 FVGRLA-PEKGLDDLIEAFALLKERGPDLKLVIAGD-----------------------------------------GPE  146 (229)
T ss_pred             EEEeec-ccCCHHHHHHHHHHHHHhCCCeEEEEEeC-----------------------------------------CCC
Confidence            555544 34899999999999999999999999881                                         112


Q ss_pred             hhhHHHHHHHcCCCCCeEEeccCcCh-HHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcch
Q psy17691        557 EANIQATAQALGLDQHRILFSNVAAK-EEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLA  626 (673)
Q Consensus       557 ~~~~~~~~~~~g~~~~rv~~~~~~~~-~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~  626 (673)
                      ...........+. .++|.+.|..+. ++.-..++.+||++-|. ..+-|++.+|||+||+|||+-....+.
T Consensus       147 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~  217 (229)
T cd01635         147 REYLEELLAALLL-LDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPP  217 (229)
T ss_pred             hHHHHHHHHhcCC-cccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence            2223332455666 489999998755 44555555699998865 567799999999999999997775443

The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.

>KOG1070|consensus

Probab=97.98  E-value=0.00022  Score=83.77  Aligned_cols=127  Identities=17%  Similarity=0.133  Sum_probs=94.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCC
Q psy17691        122 YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE--FAAAHSNLASVLQQQGK  199 (673)
Q Consensus       122 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~  199 (673)
                      +.+.|...+++++|.++|+..++...+...+|..+|..++++++-++|...+++|++--|.  +.+.....|.+-++.|+
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence            3445555667777777777777777777777777777777777777777777777777776  66677777777777777


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691        200 LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN  248 (673)
Q Consensus       200 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~  248 (673)
                      .+.+...|+-.+.-+|.-.+.|.-+...-.+.|+.+.+...|++++.+.
T Consensus      1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            7777777777777777777777777777777777777777777777653

>KOG2376|consensus

Probab=97.95  E-value=0.00016  Score=78.40  Aligned_cols=126  Identities=16%  Similarity=0.061  Sum_probs=86.6

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17691        118 TTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ  197 (673)
Q Consensus       118 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  197 (673)
                      .+|..+..+...++|++|.....+.+...|++..+....-.++.+.++|++|+...++-....-.+. ..+..+.|.+++
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHc
Confidence            3444455555677888888888888888888888877777778888888887754444332222221 125677778888


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        198 GKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       198 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      ++.++|+..++   -.++.+..+....|++++++|+|++|...|+..++-
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn  139 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN  139 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            88888888777   345555567777788888888888888888777554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.94  E-value=0.00059  Score=82.78  Aligned_cols=127  Identities=14%  Similarity=0.081  Sum_probs=102.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHH
Q psy17691        123 IISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFPE--------FAAAHS  188 (673)
Q Consensus       123 ~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--------~~~~~~  188 (673)
                      +..+...|++++|...+++++......      ..++..+|.++..+|++++|...++++++....        ....+.
T Consensus       498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  577 (903)
T PRK04841        498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR  577 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence            344566999999999999999874322      346678899999999999999999999886322        234466


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAIRIQPS-----FADAYSNMGNTLKEMQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p  249 (673)
                      .+|.++...|++++|...+++++.....     ....+..+|.++...|++++|...++++..+..
T Consensus       578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999886332     245677799999999999999999999987643

>KOG0545|consensus

Probab=97.90  E-value=0.00011  Score=71.34  Aligned_cols=106  Identities=19%  Similarity=0.234  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEV--------FPE----------FAAAHSNLASVLQQQGKLTDALLHYKEAI  211 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--------~p~----------~~~~~~~la~~~~~~g~~~eA~~~~~~al  211 (673)
                      ..++..-|+-++.+|+|.||...|+.|+..        .|.          ....+.|++.++...|+|-++++.....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            345666777777777777777777777532        233          34578899999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691        212 RIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH  255 (673)
Q Consensus       212 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~  255 (673)
                      ..+|.+..+++..|.+....=+.++|.+.|.++|+++|.-..+-
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            99999999999999999998899999999999999998765543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.85  E-value=3.4e-05  Score=55.60  Aligned_cols=42  Identities=19%  Similarity=0.313  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS  260 (673)
Q Consensus       219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~  260 (673)
                      .++..+|.+|..+|++++|++.|+++++.+|+++.++..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            345566666666666666666666666666666666665553

>KOG3081|consensus

Probab=97.85  E-value=0.0034  Score=62.25  Aligned_cols=128  Identities=15%  Similarity=0.069  Sum_probs=100.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKRE----QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK  199 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  199 (673)
                      ..+.++.+.+-|.+.+++..+++.+  ..+..||..+..    .+++.+|.-+|++.-+..|..+...+..+.++..+|+
T Consensus       145 qI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~  222 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence            4456677899999999998887654  345555555543    3568889999999988888888999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHH
Q psy17691        200 LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC-YSRAIQINPGFAD  253 (673)
Q Consensus       200 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~-~~~Al~l~p~~~~  253 (673)
                      |++|...++.++..++++++.+.|+-.+-..+|+-.++.+- ..+....+|.++-
T Consensus       223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            99999999999999999999999999998888888776654 4444455666543

>KOG1941|consensus

Probab=97.84  E-value=0.00038  Score=71.27  Aligned_cols=127  Identities=21%  Similarity=0.225  Sum_probs=104.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HH
Q psy17691        122 YIISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----------AA  185 (673)
Q Consensus       122 ~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----------~~  185 (673)
                      .+.....++.++++++.|++|++...++      ..++..||.++.+..++++|.-+..+|.++-.+.          ..
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            3345566889999999999999985544      3478889999999999999999999998874322          35


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRIQ------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN  248 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~  248 (673)
                      +++.++..+..+|+...|.++++++.++.      +-.......+|.+|...|+.+.|..-|++|....
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            67889999999999999999999998773      2345577889999999999999999999998753

>KOG4642|consensus

Probab=97.83  E-value=0.00012  Score=70.96  Aligned_cols=91  Identities=22%  Similarity=0.219  Sum_probs=85.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17691        123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTD  202 (673)
Q Consensus       123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  202 (673)
                      +..++...+|+.|+.+|-+++.++|..+..+.+.+.++++.++++.+....+++++++|+....++.+|..+.....|++
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence            34455566899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy17691        203 ALLHYKEAIRI  213 (673)
Q Consensus       203 A~~~~~~al~~  213 (673)
                      |+..++++..+
T Consensus        97 aI~~Lqra~sl  107 (284)
T KOG4642|consen   97 AIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHH
Confidence            99999999665

>KOG1941|consensus

Probab=97.81  E-value=0.00041  Score=71.04  Aligned_cols=142  Identities=19%  Similarity=0.190  Sum_probs=114.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q psy17691        128 LLIQVSEAEECYNTALRLCPTH-----ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQ  196 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~  196 (673)
                      ..-++.+++.+-+..+.+....     ..+...+|..+..++.|+++++.|++|+++..++      -.++..||..+..
T Consensus        95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~  174 (518)
T KOG1941|consen   95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ  174 (518)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence            3557888888887777764332     3567779999999999999999999999985544      3578899999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Q psy17691        197 QGKLTDALLHYKEAIRIQPSF----------ADAYSNMGNTLKEMQDIQGALQCYSRAIQIN------PGFADAHSNLAS  260 (673)
Q Consensus       197 ~g~~~eA~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~------p~~~~a~~~La~  260 (673)
                      ..++++|+-+..+|.++-...          ..+++.++..+..+|+.-.|.++.+++.++.      +-.......+|.
T Consensus       175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD  254 (518)
T KOG1941|consen  175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD  254 (518)
T ss_pred             HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            999999999999999874321          3467889999999999999999999998763      223445667889


Q ss_pred             HHHHcCCCc
Q psy17691        261 IHKDSGKRG  269 (673)
Q Consensus       261 ~~~~~g~~~  269 (673)
                      +|...|+.+
T Consensus       255 IyR~~gd~e  263 (518)
T KOG1941|consen  255 IYRSRGDLE  263 (518)
T ss_pred             HHHhcccHh
Confidence            999999876

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.77  E-value=5.5e-05  Score=54.53  Aligned_cols=40  Identities=35%  Similarity=0.350  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17691        152 SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA  191 (673)
Q Consensus       152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  191 (673)
                      ++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            3444444555555555555555555555555444444444

>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1

Probab=97.74  E-value=0.00014  Score=81.58  Aligned_cols=140  Identities=13%  Similarity=0.087  Sum_probs=105.6

Q ss_pred             ccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHH
Q psy17691        484 LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQAT  563 (673)
Q Consensus       484 ~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (673)
                      ..|-....++++++++.++|++.|.|.+..  .                                    +..-...+++.
T Consensus       331 ~ek~~~~~I~av~~~~~~~p~~~L~~~gy~--~------------------------------------~~~~~~~l~~~  372 (519)
T TIGR03713       331 SDEELQQILQQLLQYILKNPDYELKILTYN--N------------------------------------DNDITQLLEDI  372 (519)
T ss_pred             ChHHHHHHHHHHHHHHhhCCCeEEEEEEec--C------------------------------------chhHHHHHHHH
Confidence            568899999999999999999999987721  0                                    00112334343


Q ss_pred             HHHcCCC----------------------------CCeEEeccCcChHHHHHhcccccEEecCCCC-CCcchhhhhhhcC
Q psy17691        564 AQALGLD----------------------------QHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTG  614 (673)
Q Consensus       564 ~~~~g~~----------------------------~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~-~g~~t~~eal~~G  614 (673)
                      .++.++.                            .+||.|.|..+..+....|..+.+++|+-.. +.+ |.+||+..|
T Consensus       373 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~G  451 (519)
T TIGR03713       373 LEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAG  451 (519)
T ss_pred             HHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcC
Confidence            3444332                            1799999988877899999999999998744 556 999999999


Q ss_pred             CceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        615 TPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       615 vPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      +|+| -.|+        +-+-.=|-.++|..+.++..+..+.+..|+...++++.+.
T Consensus       452 iPqI-nyg~--------~~~V~d~~NG~li~d~~~l~~al~~~L~~~~~wn~~~~~s  499 (519)
T TIGR03713       452 IPQI-NKVE--------TDYVEHNKNGYIIDDISELLKALDYYLDNLKNWNYSLAYS  499 (519)
T ss_pred             CCee-ecCC--------ceeeEcCCCcEEeCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            9999 2221        1122237778888999999999999999999999888764

This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.74  E-value=3.2e-05  Score=52.31  Aligned_cols=32  Identities=38%  Similarity=0.632  Sum_probs=18.1

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL  238 (673)
Q Consensus       207 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~  238 (673)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45555555555555555555555555555554

>PRK10125 putative glycosyl transferase; Provisional

Probab=97.72  E-value=8.4e-05  Score=81.25  Aligned_cols=51  Identities=14%  Similarity=0.095  Sum_probs=42.3

Q ss_pred             CeEEeccCc-ChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceeecCC
Q psy17691        572 HRILFSNVA-AKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       572 ~rv~~~~~~-~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                      ++|.+.|.. +..+....|..+|+|+- |.-++-|+|.+|||++|+|||+-.-
T Consensus       286 ~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~  338 (405)
T PRK10125        286 GNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHS  338 (405)
T ss_pred             cceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCC
Confidence            467888865 46788999999999955 5677889999999999999998644

>KOG0376|consensus

Probab=97.72  E-value=5.3e-05  Score=80.63  Aligned_cols=104  Identities=22%  Similarity=0.214  Sum_probs=62.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA  203 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  203 (673)
                      ...+.-+.++.|+..|.+|++++|+++..+.+.+..+.+.+++..|+..+.++++.+|....+|+..|......+++.+|
T Consensus        12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A   91 (476)
T KOG0376|consen   12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA   91 (476)
T ss_pred             hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence            33444556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        204 LLHYKEAIRIQPSFADAYSNMGNT  227 (673)
Q Consensus       204 ~~~~~~al~~~p~~~~~~~~lg~~  227 (673)
                      +..|++...+.|+++.+...+-.|
T Consensus        92 ~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   92 LLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             HHHHHHhhhcCcCcHHHHHHHHHH
Confidence            666666666666665555444433

>KOG2471|consensus

Probab=97.71  E-value=0.00023  Score=75.32  Aligned_cols=145  Identities=14%  Similarity=0.110  Sum_probs=119.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCC--------CHHHHHHHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA-LEVFPE--------FAAAHSNLA  191 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~a-l~~~p~--------~~~~~~~la  191 (673)
                      +....++.+.+..-+..-.+.++....+.+.+....++.++-.|++.+|.+.+... +...|.        ...+|+|||
T Consensus       211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG  290 (696)
T KOG2471|consen  211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG  290 (696)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence            33344556667777777777788788888999999999999999999999987654 223333        234689999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh---------C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        192 SVLQQQGKLTDALLHYKEAIRI---------Q---------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       192 ~~~~~~g~~~eA~~~~~~al~~---------~---------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                      .++++.|.|..+..+|.+|++-         .         ....++++|.|..|...|+.-.|.+||.++....-.++.
T Consensus       291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr  370 (696)
T KOG2471|consen  291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR  370 (696)
T ss_pred             eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence            9999999999999999999961         1         124578999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHc
Q psy17691        254 AHSNLASIHKDS  265 (673)
Q Consensus       254 a~~~La~~~~~~  265 (673)
                      .|..|+.|....
T Consensus       371 lWLRlAEcCima  382 (696)
T KOG2471|consen  371 LWLRLAECCIMA  382 (696)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987643

>TIGR01426 MGT glycosyltransferase, MGT family

Probab=97.68  E-value=0.00055  Score=74.62  Aligned_cols=141  Identities=18%  Similarity=0.311  Sum_probs=93.5

Q ss_pred             CcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCC
Q psy17691        474 DAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFP  553 (673)
Q Consensus       474 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (673)
                      ..++|.+++......+..++...+.+...+...++..+                                         .
T Consensus       225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g-----------------------------------------~  263 (392)
T TIGR01426       225 RPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVG-----------------------------------------R  263 (392)
T ss_pred             CCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEEC-----------------------------------------C
Confidence            35678888877666666666666667666644444433                                         1


Q ss_pred             hhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHH
Q psy17691        554 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQ  633 (673)
Q Consensus       554 ~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~  633 (673)
                      +.....+    .  .+ +++|.+.+..++.+.   +..+|+++.   .+|..|++|||.+|+|+|+++...- ...-+..
T Consensus       264 ~~~~~~~----~--~~-~~~v~~~~~~p~~~l---l~~~~~~I~---hgG~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~  329 (392)
T TIGR01426       264 GVDPADL----G--EL-PPNVEVRQWVPQLEI---LKKADAFIT---HGGMNSTMEALFNGVPMVAVPQGAD-QPMTARR  329 (392)
T ss_pred             CCChhHh----c--cC-CCCeEEeCCCCHHHH---HhhCCEEEE---CCCchHHHHHHHhCCCEEecCCccc-HHHHHHH
Confidence            1111111    1  13 478888999887654   457999984   6788899999999999999875432 3344555


Q ss_pred             HHhcCCCcccc---CCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691        634 LATLGCPELIA---RTHKEYQDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       634 l~~~gl~~~ia---~~~~~yv~~a~~la~d~~~~~~~~~  669 (673)
                      +...|....+-   .+.++..+...++..|++.++.++.
T Consensus       330 l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~  368 (392)
T TIGR01426       330 IAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRK  368 (392)
T ss_pred             HHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence            66777665443   2567888878788899987766654

This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.

>KOG1070|consensus

Probab=97.67  E-value=0.0018  Score=76.55  Aligned_cols=159  Identities=15%  Similarity=0.162  Sum_probs=112.4

Q ss_pred             HhcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy17691        110 YALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRL-CPTH----ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF  183 (673)
Q Consensus       110 ~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~  183 (673)
                      ...+|+....| .+....++.++.++|.+..++||.. ++..    ..+|..+-++...-|.-+.-.+.|++|.+.+. .
T Consensus      1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~ 1529 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-A 1529 (1710)
T ss_pred             HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-h
Confidence            34577877777 5666677899999999999999984 3332    23444444444444555666677777776643 2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q psy17691        184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG--FADAHSNLASI  261 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~--~~~a~~~La~~  261 (673)
                      ..+|..|..+|...+++++|.++|+..++...+....|..+|..+.++.+-++|...+++|++.-|.  +.+.....+++
T Consensus      1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            4566777777777777777777777777777677777777777777777777777777777777776  66667777777


Q ss_pred             HHHcCCCc
Q psy17691        262 HKDSGKRG  269 (673)
Q Consensus       262 ~~~~g~~~  269 (673)
                      ..+.|+-+
T Consensus      1610 EFk~GDae 1617 (1710)
T KOG1070|consen 1610 EFKYGDAE 1617 (1710)
T ss_pred             HhhcCCch
Confidence            77777766

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.66  E-value=0.00097  Score=69.04  Aligned_cols=129  Identities=12%  Similarity=0.103  Sum_probs=104.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691        125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKRE-QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA  203 (673)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  203 (673)
                      ...+.+..+.|..+|++|++..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|..+...+...++.+.|
T Consensus        10 ~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~a   89 (280)
T PF05843_consen   10 FMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNA   89 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHH
Confidence            33445668999999999987666678899999999777 55666699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        204 LLHYKEAIRIQPSFA---DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       204 ~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                      ...|++++..-+...   .+|......-.+.|+.+.....++++.+..|+...
T Consensus        90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            999999998866654   58888888888999999999999999998888443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.66  E-value=4.8e-05  Score=51.42  Aligned_cols=32  Identities=47%  Similarity=0.667  Sum_probs=16.0

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        139 YNTALRLCPTHADSLNNLANIKREQGYIEEAT  170 (673)
Q Consensus       139 ~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~  170 (673)
                      |+++++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44455555555555555555555555555443

>PLN03004 UDP-glycosyltransferase

Probab=97.63  E-value=0.00066  Score=74.73  Aligned_cols=155  Identities=12%  Similarity=0.152  Sum_probs=98.4

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      ...|+|.||+....++++.++-.+.-|...+...||.+..+...+...                      +         
T Consensus       269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~----------------------~---------  317 (451)
T PLN03004        269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTE----------------------L---------  317 (451)
T ss_pred             CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccc----------------------c---------
Confidence            457999999999999999999999999999998888775210000000                      0         


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccE--EecCCCCCCcchhhhhhhcCCceeecCCCcchhhhH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADV--CLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVA  630 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di--~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~  630 (673)
                       . ....+-.-|.++ +.-..+++.++.|+.+.|+   ..++  |+   .++|-+|++||+++|||+|+++-- .-....
T Consensus       318 -~-~~~~lp~gf~er-~~~~g~~v~~W~PQ~~iL~---H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~-~DQ~~n  387 (451)
T PLN03004        318 -D-LKSLLPEGFLSR-TEDKGMVVKSWAPQVPVLN---HKAVGGFV---THCGWNSILEAVCAGVPMVAWPLY-AEQRFN  387 (451)
T ss_pred             -c-hhhhCChHHHHh-ccCCcEEEEeeCCHHHHhC---CCccceEe---ccCcchHHHHHHHcCCCEEecccc-ccchhh
Confidence             0 000011112221 2123578889999998776   3444  54   488999999999999999998742 112222


Q ss_pred             HHHHH-hcCCCcccc------CCHHHHHHHHHHhcCCHHHHHHHH
Q psy17691        631 ASQLA-TLGCPELIA------RTHKEYQDIAIRLGTDRDYCEKAL  668 (673)
Q Consensus       631 ~~~l~-~~gl~~~ia------~~~~~yv~~a~~la~d~~~~~~~~  668 (673)
                      +..+. .+|+.--+.      -+.++-.+...++..|...+++.+
T Consensus       388 a~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~  432 (451)
T PLN03004        388 RVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTM  432 (451)
T ss_pred             HHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHH
Confidence            33443 344432221      267777777777888876666554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.63  E-value=0.01  Score=58.95  Aligned_cols=172  Identities=15%  Similarity=0.115  Sum_probs=127.4

Q ss_pred             cHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCCh
Q psy17691         38 FPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDG  117 (673)
Q Consensus        38 ~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~  117 (673)
                      -+..+++.|....+.|++++|.. .++.+....|.                                        .|-..
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~-~fe~l~~~~p~----------------------------------------s~~~~   71 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIK-YFEALDSRHPF----------------------------------------SPYSE   71 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcCCC----------------------------------------CcccH
Confidence            56789999999999999998875 33333222221                                        11122


Q ss_pred             hHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCH-
Q psy17691        118 TTF-SYIISVLLLIQVSEAEECYNTALRLCPTHAD---SLNNLANIKREQ--------GYIEEATRLYLKALEVFPEFA-  184 (673)
Q Consensus       118 ~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~Lg~~~~~~--------g~~~eA~~~~~~al~~~p~~~-  184 (673)
                      .+. ..+-.+++.+++++|+...++-+++.|.+++   +++..|.+++..        .-..+|+..++..++..|+.. 
T Consensus        72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y  151 (254)
T COG4105          72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY  151 (254)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence            232 4456678899999999999999999988754   677778776643        335678889999999999872 


Q ss_pred             ----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        185 ----------------AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF---ADAYSNMGNTLKEMQDIQGALQCYSRAI  245 (673)
Q Consensus       185 ----------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~Al  245 (673)
                                      .--...|..|.+.|.+..|+..+++.++..|+.   .+++..+..+|..+|-.++|...- +.|
T Consensus       152 a~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl  230 (254)
T COG4105         152 APDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVL  230 (254)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH-HHH
Confidence                            112346888999999999999999999987765   468889999999999999997764 455


Q ss_pred             HhC-CCC
Q psy17691        246 QIN-PGF  251 (673)
Q Consensus       246 ~l~-p~~  251 (673)
                      ..+ |++
T Consensus       231 ~~N~p~s  237 (254)
T COG4105         231 GANYPDS  237 (254)
T ss_pred             HhcCCCC
Confidence            554 443

>KOG0376|consensus

Probab=97.62  E-value=8.3e-05  Score=79.19  Aligned_cols=112  Identities=24%  Similarity=0.297  Sum_probs=104.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        154 NNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD  233 (673)
Q Consensus       154 ~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  233 (673)
                      -+-+...+..+.|+.|+..|.+|++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.+++.+++
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~   87 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE   87 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence            34566777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        234 IQGALQCYSRAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       234 ~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      +.+|...|++...+.|+++.+...+..|-...
T Consensus        88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v  119 (476)
T KOG0376|consen   88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIV  119 (476)
T ss_pred             HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence            99999999999999999999988887775433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.60  E-value=0.002  Score=69.26  Aligned_cols=105  Identities=21%  Similarity=0.227  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Q psy17691        152 SLNNLANIKREQGYIEEATRLYLKALEVFPE--FAAAHSNLASVLQQQGKLTDALLHYKEAIRI-QPSFADAYSNMGNTL  228 (673)
Q Consensus       152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~  228 (673)
                      +...+|.+..++|+.+||++.++..++.+|.  +..++.+|..++...++|.++...+.+--++ -|+.+...+.-+.+.
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk  340 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK  340 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            4455677777777777777777777766654  3556777777777777777777666664333 244444444444332


Q ss_pred             HH-cCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        229 KE-MQD---------------IQGALQCYSRAIQINPGFADAHS  256 (673)
Q Consensus       229 ~~-~g~---------------~~eA~~~~~~Al~l~p~~~~a~~  256 (673)
                      .+ .++               -..|.+.+.+|++.+|.-+....
T Consensus       341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            22 111               13477899999999998877653

The molecular function of this protein is uncertain.

>KOG0545|consensus

Probab=97.56  E-value=0.00092  Score=65.16  Aligned_cols=101  Identities=17%  Similarity=0.077  Sum_probs=89.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRL--------CPTHA----------DSLNNLANIKREQGYIEEATRLYLKALEVFP  181 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~----------~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p  181 (673)
                      ...++.++..|+|.+|...|+.|+..        .|..+          ..+.|+++++...|+|-++++.....|..+|
T Consensus       182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~  261 (329)
T KOG0545|consen  182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP  261 (329)
T ss_pred             HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence            45667889999999999999999765        35543          3688999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691        182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA  220 (673)
Q Consensus       182 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  220 (673)
                      .+..+++..|.+....=+..+|.+-+.++++++|.-..+
T Consensus       262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            999999999999999999999999999999999986543

>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]

Probab=97.56  E-value=0.00083  Score=69.91  Aligned_cols=145  Identities=19%  Similarity=0.144  Sum_probs=102.4

Q ss_pred             EEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCC
Q psy17691        476 IVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFP  553 (673)
Q Consensus       476 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (673)
                      .++.+++++  .|..+..++....+....|+..+++++.                                         
T Consensus       200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~-----------------------------------------  238 (381)
T COG0438         200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGD-----------------------------------------  238 (381)
T ss_pred             eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcC-----------------------------------------
Confidence            455555554  4777888888888888777777777761                                         


Q ss_pred             hhh-hhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC-CCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691        554 AVG-EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLPGETLASRVAA  631 (673)
Q Consensus       554 ~~~-~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p-~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~  631 (673)
                      +.. .+.+...+...+. .+.|.|.|..+.++....++.+|+++-|.. ++-|.+++||+++|+|||+...+....    
T Consensus       239 ~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e----  313 (381)
T COG0438         239 GPERREELEKLAKKLGL-EDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPE----  313 (381)
T ss_pred             CCccHHHHHHHHHHhCC-CCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCCChHH----
Confidence            111 2445556677776 478999999987777778888999988864 477888999999999999876643322    


Q ss_pred             HHHHhc--CCCccccC-CHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691        632 SQLATL--GCPELIAR-THKEYQDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       632 ~~l~~~--gl~~~ia~-~~~~yv~~a~~la~d~~~~~~~~~  669 (673)
                       ++..-  |.  ++.. +.++.++....+..+.+.++.+..
T Consensus       314 -~~~~~~~g~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  351 (381)
T COG0438         314 -VVEDGETGL--LVPPGDVEELADALEQLLEDPELREELGE  351 (381)
T ss_pred             -HhcCCCceE--ecCCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence             23332  33  3333 479999999999988866666553

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.54  E-value=0.00015  Score=48.88  Aligned_cols=32  Identities=38%  Similarity=0.767  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPG  250 (673)
Q Consensus       219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~  250 (673)
                      .+|+++|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2053|consensus

Probab=97.53  E-value=0.0025  Score=72.51  Aligned_cols=133  Identities=17%  Similarity=0.033  Sum_probs=112.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL  204 (673)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  204 (673)
                      .....+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+-.+-.+|..++++++|.
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence            34456799999999999999999999999999999999999999998888888888888889999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691        205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL  258 (673)
Q Consensus       205 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~L  258 (673)
                      .+|+++++.+|+ -+....+=.+|.+-+.|.+-.+.--+..+..|+++....+.
T Consensus        98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV  150 (932)
T KOG2053|consen   98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV  150 (932)
T ss_pred             HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence            999999999999 77777887888888887765555555555677766544443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.50  E-value=0.0033  Score=67.60  Aligned_cols=140  Identities=20%  Similarity=0.167  Sum_probs=101.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----------------  183 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----------------  183 (673)
                      ........+..+.++-++.-++|++++|+.+.++..|+.=  ......+|+++|+++++.....                
T Consensus       172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA  249 (539)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence            3444555677899999999999999999999999988752  2344678888888887652110                


Q ss_pred             ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q psy17691        184 ---------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS--FADAYSNMGNTLKEMQDIQGALQCYSRAIQI-NPGF  251 (673)
Q Consensus       184 ---------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l-~p~~  251 (673)
                               ..+...+|.+..++|+.+||++.++..++..|.  +..++.+|-.++..+++|.++...+.+-=++ -|+.
T Consensus       250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS  329 (539)
T PF04184_consen  250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS  329 (539)
T ss_pred             hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence                     234567888888889999999999888887765  4567888888888888888888888774222 2444


Q ss_pred             HHHHHHHHHH
Q psy17691        252 ADAHSNLASI  261 (673)
Q Consensus       252 ~~a~~~La~~  261 (673)
                      +...+.-+.+
T Consensus       330 Ati~YTaALL  339 (539)
T PF04184_consen  330 ATICYTAALL  339 (539)
T ss_pred             HHHHHHHHHH
Confidence            5544444433

The molecular function of this protein is uncertain.

>PLN02670 transferase, transferring glycosyl groups

Probab=97.47  E-value=0.0013  Score=72.87  Aligned_cols=154  Identities=12%  Similarity=0.138  Sum_probs=96.3

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      +..|+|.||+....++++.++-.+.-|.+.|...||.+..+.....+                  ..+..          
T Consensus       277 ~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~------------------~~~~l----------  328 (472)
T PLN02670        277 VNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQN------------------ALEML----------  328 (472)
T ss_pred             CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccc------------------hhhcC----------
Confidence            45799999999999999999999999999999888876521000000                  00000          


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAAS  632 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~  632 (673)
                      +    +...++....|     +++.++.|+.+.|+- ..+..|+   .++|-+|++||+++|||+|+++-- .-....+.
T Consensus       329 p----~~f~~~~~~rG-----~vv~~W~PQ~~IL~H-~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~-~DQ~~Na~  394 (472)
T PLN02670        329 P----DGFEERVKGRG-----MIHVGWVPQVKILSH-ESVGGFL---THCGWNSVVEGLGFGRVLILFPVL-NEQGLNTR  394 (472)
T ss_pred             C----hHHHHhccCCC-----eEEeCcCCHHHHhcC-cccceee---ecCCcchHHHHHHcCCCEEeCcch-hccHHHHH
Confidence            1    12222222222     577899998887763 3333454   489999999999999999998732 11122333


Q ss_pred             HHHhcCCCcccc-------CCHHHHHHHHHHhcCCH---HHHHHHH
Q psy17691        633 QLATLGCPELIA-------RTHKEYQDIAIRLGTDR---DYCEKAL  668 (673)
Q Consensus       633 ~l~~~gl~~~ia-------~~~~~yv~~a~~la~d~---~~~~~~~  668 (673)
                      .+...|+.--+.       -+.++-.+...++..|.   +.|++.+
T Consensus       395 ~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~  440 (472)
T PLN02670        395 LLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAK  440 (472)
T ss_pred             HHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            444455543221       25677777777777664   4554444

>KOG0853|consensus

Probab=97.46  E-value=0.001  Score=72.41  Aligned_cols=169  Identities=15%  Similarity=0.131  Sum_probs=116.4

Q ss_pred             ccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhccc-----CeeEEeeccCCcCCCCCCCCcccccCCCCccch
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVP-----NSILWLLKFPAVGEANISRPLFRPRLRPSASTS  536 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  536 (673)
                      ..|...|+....++|.++|+..  |-..-.+..+.+.....|     .-++.+.+.++      .+    .|        
T Consensus       262 ~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G------~d----~~--------  323 (495)
T KOG0853|consen  262 PVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRG------YD----ER--------  323 (495)
T ss_pred             ccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCC------cc----cc--------
Confidence            3455567778889999999776  555566777777777764     34555555221      00    01        


Q ss_pred             hhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC-CCCcchhhhhhhcCC
Q psy17691        537 IVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGT  615 (673)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p-~~g~~t~~eal~~Gv  615 (673)
                           ++.        +......|+..+++.++..+.+.|++..+..+-..++..+.+.+-+.. +.=|.|++|||++|+
T Consensus       324 -----~se--------n~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~gl  390 (495)
T KOG0853|consen  324 -----DSE--------NVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGL  390 (495)
T ss_pred             -----chh--------hHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCC
Confidence                 011        223356788999999997788999998887777778888888877653 466999999999999


Q ss_pred             ceeec-CCCcchhhhHHHHHHhcCCCc-cccCCHH---HHHHHHHHhcCCHHHHHHHHhh
Q psy17691        616 PVVTL-PGETLASRVAASQLATLGCPE-LIARTHK---EYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       616 Pvvt~-~g~~~~~r~~~~~l~~~gl~~-~ia~~~~---~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      |||.. .|.+.-.      . .-|.++ ++..+.+   ...+.-+.+.+|++.+.+++++
T Consensus       391 PvvAt~~GGP~Ei------V-~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~  443 (495)
T KOG0853|consen  391 PVVATNNGGPAEI------V-VHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKN  443 (495)
T ss_pred             CEEEecCCCceEE------E-EcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99865 4433211      0 114444 3334455   4888999999999999999864

>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=97.46  E-value=0.00038  Score=82.12  Aligned_cols=150  Identities=15%  Similarity=0.071  Sum_probs=97.4

Q ss_pred             CcEEEecCCccc--ccChhhHHHHHHHHhcccCee--EEe--eccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691        474 DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSI--LWL--LKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL  547 (673)
Q Consensus       474 ~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~--l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (673)
                      +..++.+++|+.  |..+..++++.++|+..|+.+  ++|  +..|..                                
T Consensus       278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr--------------------------------  325 (797)
T PLN03063        278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTR--------------------------------  325 (797)
T ss_pred             CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCC--------------------------------
Confidence            456677788765  999999999999999999863  333  331110                                


Q ss_pred             hhccCChhhhhhHHHHHHHcC--CCC--Ce-----EEec-cCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCc
Q psy17691        548 WLLKFPAVGEANIQATAQALG--LDQ--HR-----ILFS-NVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTP  616 (673)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~g--~~~--~r-----v~~~-~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvP  616 (673)
                          ..++..+.+++.+.+.+  +..  ++     |++. +.++.++..++|+.+|||+-|. -.+=+.+.+|||++|+|
T Consensus       326 ----~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p  401 (797)
T PLN03063        326 ----NDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKA  401 (797)
T ss_pred             ----CchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecC
Confidence                12344556777776664  421  11     2333 4688899999999999997765 56779999999999988


Q ss_pred             ----eeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcC-CHHHHHHH
Q psy17691        617 ----VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT-DRDYCEKA  667 (673)
Q Consensus       617 ----vvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~-d~~~~~~~  667 (673)
                          +|.-       +++.+ -..+|-..++.  .|.++..+...++.+ +++.+++.
T Consensus       402 ~~gvlVlS-------e~~G~-~~~l~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r  451 (797)
T PLN03063        402 KKGVLVLS-------EFAGA-GQSLGAGALLVNPWNITEVSSAIKEALNMSDEERETR  451 (797)
T ss_pred             CCCCEEee-------CCcCc-hhhhcCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHH
Confidence                3331       11110 00124344443  578888887777777 66655543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.44  E-value=0.00033  Score=47.03  Aligned_cols=33  Identities=15%  Similarity=0.522  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~  251 (673)
                      .+|+.+|.++..+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            455666666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.36  E-value=0.0058  Score=56.46  Aligned_cols=62  Identities=26%  Similarity=0.324  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  246 (673)
                      .+...++..+...|++++|+..+++++..+|.+-.+|..+-.+|..+|+..+|++.|++..+
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            45666788888899999999999999999999999999999999999999999998888754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN00414 glycosyltransferase family protein

Probab=97.34  E-value=0.0019  Score=71.25  Aligned_cols=158  Identities=11%  Similarity=0.164  Sum_probs=92.5

Q ss_pred             CCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       472 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      +++.|+|.||+....++.+-+.-.+.-|...-.--+|.+..+ .+....                               
T Consensus       250 ~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~-~~~~~~-------------------------------  297 (446)
T PLN00414        250 EPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPP-KGSSTV-------------------------------  297 (446)
T ss_pred             CCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecC-CCcccc-------------------------------
Confidence            456899999999999986555554554555444456766521 010000                               


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA  631 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~  631 (673)
                       .+.-.+.+..+....|     +++.++.|+.+.|.- ..++.|+   .++|.+|++||+++|||+|+++-- .-....+
T Consensus       298 -~~~lp~~f~~r~~~~g-----~vv~~w~PQ~~vL~h-~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~-~dQ~~na  366 (446)
T PLN00414        298 -QEALPEGFEERVKGRG-----IVWEGWVEQPLILSH-PSVGCFV---NHCGFGSMWESLVSDCQIVFIPQL-ADQVLIT  366 (446)
T ss_pred             -hhhCChhHHHHhcCCC-----eEEeccCCHHHHhcC-CccceEE---ecCchhHHHHHHHcCCCEEecCcc-cchHHHH
Confidence             0000122333332222     567799999887763 3345555   489999999999999999999752 1122333


Q ss_pred             HHH-HhcCCCcccc------CCHHHHHHHHHHhcCCH-HHHHHHHhhhc
Q psy17691        632 SQL-ATLGCPELIA------RTHKEYQDIAIRLGTDR-DYCEKALLYHE  672 (673)
Q Consensus       632 ~~l-~~~gl~~~ia------~~~~~yv~~a~~la~d~-~~~~~~~~~~~  672 (673)
                      .++ ..+|+.--+.      -+.++-.+...++..|. +..+++|+.++
T Consensus       367 ~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~  415 (446)
T PLN00414        367 RLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHK  415 (446)
T ss_pred             HHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHH
Confidence            444 3455542221      26777777777777654 55566665543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.013  Score=59.24  Aligned_cols=168  Identities=16%  Similarity=0.185  Sum_probs=118.4

Q ss_pred             CCCchhHHHHHHHhcC-CCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691         98 GMHNKSRVEIFCYALS-PDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA  176 (673)
Q Consensus        98 ~~~~~~a~~~~~~~l~-p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~a  176 (673)
                      +...++.+..+...+- +.....+..+......|++.+|...+..+++..|++.++...++.+|...|+.++|...+...
T Consensus       115 G~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l  194 (304)
T COG3118         115 GAQPESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL  194 (304)
T ss_pred             CCCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence            3344445555433333 333445566667778999999999999999999999999999999999999999998887764


Q ss_pred             HhhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH
Q psy17691        177 LEVFPEFAAAHSNLA--SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP--GFA  252 (673)
Q Consensus       177 l~~~p~~~~~~~~la--~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p--~~~  252 (673)
                      -....+.. .....+  ..+.+.....+ ...+++.+..+|++.++-+.+|..+...|+.++|.+.+-..++.+-  ++.
T Consensus       195 P~~~~~~~-~~~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~  272 (304)
T COG3118         195 PLQAQDKA-AHGLQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG  272 (304)
T ss_pred             cccchhhH-HHHHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc
Confidence            22222211 111111  12222222221 2345666788999999999999999999999999999999988765  345


Q ss_pred             HHHHHHHHHHHHcCC
Q psy17691        253 DAHSNLASIHKDSGK  267 (673)
Q Consensus       253 ~a~~~La~~~~~~g~  267 (673)
                      .+...|-.++...|.
T Consensus       273 ~~Rk~lle~f~~~g~  287 (304)
T COG3118         273 EARKTLLELFEAFGP  287 (304)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            677777777777664

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.34  E-value=0.00038  Score=46.89  Aligned_cols=31  Identities=32%  Similarity=0.477  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPS  216 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  216 (673)
                      +|+++|.++..+|++++|+.+|+++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN02173 UDP-glucosyl transferase family protein

Probab=97.33  E-value=0.0018  Score=71.26  Aligned_cols=147  Identities=13%  Similarity=0.221  Sum_probs=89.5

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      .+.++|.||+....++++.++-.+.-|...|  .+|.+..+   +                                   
T Consensus       263 ~~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~---~-----------------------------------  302 (449)
T PLN02173        263 QGSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRAS---E-----------------------------------  302 (449)
T ss_pred             CCceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEecc---c-----------------------------------
Confidence            4569999999999999999888888885555  55655410   0                                   


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAAS  632 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~  632 (673)
                          .+.+-+-+.+. +..+++.+.++.|+.+.|+- ..+..|+   .++|.+|++||+++|||+|+++-- .-....+-
T Consensus       303 ----~~~lp~~~~~~-~~~~~~~i~~W~PQ~~iL~H-~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~-~DQ~~Na~  372 (449)
T PLN02173        303 ----ESKLPPGFLET-VDKDKSLVLKWSPQLQVLSN-KAIGCFM---THCGWNSTMEGLSLGVPMVAMPQW-TDQPMNAK  372 (449)
T ss_pred             ----hhcccchHHHh-hcCCceEEeCCCCHHHHhCC-CccceEE---ecCccchHHHHHHcCCCEEecCch-hcchHHHH
Confidence                00011111111 22467888899998887763 3344554   489999999999999999998742 11122333


Q ss_pred             HHHh-cCCCcccc-------CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        633 QLAT-LGCPELIA-------RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       633 ~l~~-~gl~~~ia-------~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      .+.. +|+.--+.       -+.|+-.+...++..|.+. +++|..
T Consensus       373 ~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~-~~~r~~  417 (449)
T PLN02173        373 YIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKS-KEMKEN  417 (449)
T ss_pred             HHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChH-HHHHHH
Confidence            3432 23321110       1667777777777766432 444443

>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein

Probab=97.32  E-value=0.0019  Score=71.31  Aligned_cols=146  Identities=12%  Similarity=0.224  Sum_probs=91.9

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      .+.|+|.||+...+++.+.+.-.+.-|+..+...||.+..+...+.                            .|    
T Consensus       263 ~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~----------------------------~~----  310 (451)
T PLN02410        263 KNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGS----------------------------EW----  310 (451)
T ss_pred             CCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCccccc----------------------------ch----
Confidence            4589999999999999999999999999999988887651100000                            00    


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAAS  632 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~  632 (673)
                          .+.+-.-|.++ + .+|..+.++.|+.+.|.- ..+..|+   .++|-+|++||+++|||+|+++--. -....+.
T Consensus       311 ----~~~lp~~f~er-~-~~~g~v~~w~PQ~~iL~h-~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~-DQ~~na~  379 (451)
T PLN02410        311 ----IESLPKEFSKI-I-SGRGYIVKWAPQKEVLSH-PAVGGFW---SHCGWNSTLESIGEGVPMICKPFSS-DQKVNAR  379 (451)
T ss_pred             ----hhcCChhHHHh-c-cCCeEEEccCCHHHHhCC-CccCeee---ecCchhHHHHHHHcCCCEEeccccc-cCHHHHH
Confidence                00011112222 2 367777799999987763 3344455   4889999999999999999986421 1122223


Q ss_pred             HHHhc-CCCccc--cCCHHHHHHHHHHhcCCH
Q psy17691        633 QLATL-GCPELI--ARTHKEYQDIAIRLGTDR  661 (673)
Q Consensus       633 ~l~~~-gl~~~i--a~~~~~yv~~a~~la~d~  661 (673)
                      .+... |+.--+  --+.++..+...++..|+
T Consensus       380 ~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~  411 (451)
T PLN02410        380 YLECVWKIGIQVEGDLDRGAVERAVKRLMVEE  411 (451)
T ss_pred             HHHHHhCeeEEeCCcccHHHHHHHHHHHHcCC
Confidence            33221 332111  126677666666777665

>KOG1586|consensus

Probab=97.32  E-value=0.0094  Score=58.00  Aligned_cols=135  Identities=16%  Similarity=0.198  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHH-cCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------
Q psy17691        118 TTFSYIISVLL-LIQVSEAEECYNTALRLC-----PT-HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA------  184 (673)
Q Consensus       118 ~~~~~~~~~~~-~g~~~~A~~~~~~al~~~-----p~-~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~------  184 (673)
                      +.+..++..++ .++++.|=..|.++-+..     .+ .+..+...+++|.+ .+.++|+.++++++++..+..      
T Consensus        35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aA  113 (288)
T KOG1586|consen   35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAA  113 (288)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34445555555 568888888888887653     12 24455556666554 599999999999999976653      


Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        185 AAHSNLASVLQQQ-GKLTDALLHYKEAIRIQPSF------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       185 ~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                      ..+..+|.+|..- .++++|+.+|+++-+.....      ..++...+..-...++|.+|+..|++.....-++.-
T Consensus       114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L  189 (288)
T KOG1586|consen  114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL  189 (288)
T ss_pred             hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            3455889998765 89999999999998764332      245666777778899999999999998876555543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.31  E-value=0.00056  Score=45.88  Aligned_cols=31  Identities=32%  Similarity=0.360  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17691        152 SLNNLANIKREQGYIEEATRLYLKALEVFPE  182 (673)
Q Consensus       152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~  182 (673)
                      +++.+|.++..+|++++|+++|+++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4444455555555555555555555444444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein

Probab=97.30  E-value=0.0028  Score=70.48  Aligned_cols=109  Identities=15%  Similarity=0.306  Sum_probs=75.2

Q ss_pred             CCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       472 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      +...++|.||+....++++.++-.+.-|.+.+...+|.++.+...+..                   ...          
T Consensus       281 ~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~-------------------~~~----------  331 (477)
T PLN02863        281 EDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESD-------------------YSN----------  331 (477)
T ss_pred             CCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccc-------------------hhh----------
Confidence            345789999999999999999999999999988888876511000000                   000          


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                      .+    +.+.++..     ...+++.++.|+.+.|.. ..++.|+.   ++|-+|++||+++|||+|+++-
T Consensus       332 lp----~~~~~r~~-----~~g~~v~~w~PQ~~vL~h-~~v~~fvt---H~G~nS~~Eal~~GvP~l~~P~  389 (477)
T PLN02863        332 IP----SGFEDRVA-----GRGLVIRGWAPQVAILSH-RAVGAFLT---HCGWNSVLEGLVAGVPMLAWPM  389 (477)
T ss_pred             CC----HHHHHHhc-----cCCEEecCCCCHHHHhcC-CCcCeEEe---cCCchHHHHHHHcCCCEEeCCc
Confidence            01    11222221     235788899998887763 44667764   8899999999999999999864

>PLN02562 UDP-glycosyltransferase

Probab=97.28  E-value=0.003  Score=69.80  Aligned_cols=146  Identities=14%  Similarity=0.187  Sum_probs=91.7

Q ss_pred             CCcEEEecCCccc-ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        473 EDAIVYCNFNQLY-KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       473 ~~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      +..++|.||+... .++++.++..+..+++.+.-.+|.+..+   .                                  
T Consensus       272 ~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~---~----------------------------------  314 (448)
T PLN02562        272 PNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV---W----------------------------------  314 (448)
T ss_pred             CCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC---c----------------------------------
Confidence            3468888888865 7899999999999999998777765410   0                                  


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--Ccchhhh
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRV  629 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~  629 (673)
                       .+    .+-.-|.+. + ++|+.+.++.|+.+.|.- ..+-.|+   .++|-.|++||+++|||+|+++-  +++..  
T Consensus       315 -~~----~l~~~~~~~-~-~~~~~v~~w~PQ~~iL~h-~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n--  381 (448)
T PLN02562        315 -RE----GLPPGYVER-V-SKQGKVVSWAPQLEVLKH-QAVGCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFVN--  381 (448)
T ss_pred             -hh----hCCHHHHHH-h-ccCEEEEecCCHHHHhCC-CccceEE---ecCcchhHHHHHHcCCCEEeCCcccchHHH--
Confidence             00    010111111 2 478888899999888863 2233444   58999999999999999999853  33321  


Q ss_pred             HHHHHH-hcCCCccc-cCCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691        630 AASQLA-TLGCPELI-ARTHKEYQDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       630 ~~~~l~-~~gl~~~i-a~~~~~yv~~a~~la~d~~~~~~~~~  669 (673)
                       +..+. .+|+.=-+ --+.++-.+...++..|++.+++.++
T Consensus       382 -a~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~~a~~  422 (448)
T PLN02562        382 -CAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMGERLMK  422 (448)
T ss_pred             -HHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHHHHHHH
Confidence             11221 12332111 12677755555566678777776553

>PLN02554 UDP-glycosyltransferase family protein

Probab=97.28  E-value=0.0028  Score=70.81  Aligned_cols=161  Identities=14%  Similarity=0.119  Sum_probs=95.4

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      ...++|.||+....++++.++..+.-|++.+.-.+|.++.+..+.. .  .....                        +
T Consensus       273 ~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~-~--~~~~~------------------------~  325 (481)
T PLN02554        273 PKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIM-K--EPPGE------------------------F  325 (481)
T ss_pred             CCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCccccc-c--ccccc------------------------c
Confidence            4579999999999999999999999999999877887652100000 0  00000                        0


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--CcchhhhH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRVA  630 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~  630 (673)
                      .... +.+-.-|.++ + .+|+.+.++.|+.+.|+- ..+..|+   .++|-+|++||+++|||+|+++-  +++..-  
T Consensus       326 ~~~~-~~lp~~~~~r-~-~~~g~v~~W~PQ~~iL~H-~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na--  396 (481)
T PLN02554        326 TNLE-EILPEGFLDR-T-KDIGKVIGWAPQVAVLAK-PAIGGFV---THCGWNSILESLWFGVPMAAWPLYAEQKFNA--  396 (481)
T ss_pred             cchh-hhCChHHHHH-h-ccCceEEeeCCHHHHhCC-cccCccc---ccCccchHHHHHHcCCCEEecCccccchhhH--
Confidence            0000 0011111111 2 367777899998888752 4455554   58899999999999999999874  333221  


Q ss_pred             HHHHHhcCCCccc--------------cCCHHHHHHHHHHhcC-CHHHHHHHHh
Q psy17691        631 ASQLATLGCPELI--------------ARTHKEYQDIAIRLGT-DRDYCEKALL  669 (673)
Q Consensus       631 ~~~l~~~gl~~~i--------------a~~~~~yv~~a~~la~-d~~~~~~~~~  669 (673)
                      .-++..+|+.--+              .-+.++..+...++.. |++.|++.++
T Consensus       397 ~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~  450 (481)
T PLN02554        397 FEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKE  450 (481)
T ss_pred             HHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            1234555543211              1155666555555554 6666666543

>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin

Probab=97.28  E-value=0.0036  Score=68.35  Aligned_cols=87  Identities=15%  Similarity=0.137  Sum_probs=62.2

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccC---CH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---TH  647 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~  647 (673)
                      +++|.+.+..|+.+.+   ..||+++   ..+|..|+.|||++|||+|.++-.. -.-..+..+...|..-.+..   +.
T Consensus       287 ~~~v~~~~~~p~~~ll---~~~d~~I---~hgG~~t~~eal~~GvP~v~~P~~~-dQ~~~a~~~~~~G~g~~l~~~~~~~  359 (401)
T cd03784         287 PDNVRVVDFVPHDWLL---PRCAAVV---HHGGAGTTAAALRAGVPQLVVPFFG-DQPFWAARVAELGAGPALDPRELTA  359 (401)
T ss_pred             CCceEEeCCCCHHHHh---hhhheee---ecCCchhHHHHHHcCCCEEeeCCCC-CcHHHHHHHHHCCCCCCCCcccCCH
Confidence            5789999998876665   4599998   6788899999999999999986532 13334556677776544432   67


Q ss_pred             HHHHHHHHHhcCCHHHH
Q psy17691        648 KEYQDIAIRLGTDRDYC  664 (673)
Q Consensus       648 ~~yv~~a~~la~d~~~~  664 (673)
                      ++..+...++.+|..++
T Consensus       360 ~~l~~al~~~l~~~~~~  376 (401)
T cd03784         360 ERLAAALRRLLDPPSRR  376 (401)
T ss_pred             HHHHHHHHHHhCHHHHH
Confidence            77777777777764333

Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.

>KOG2053|consensus

Probab=97.28  E-value=0.064  Score=61.45  Aligned_cols=187  Identities=18%  Similarity=0.123  Sum_probs=113.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      ++.+|++...+.++..|+...+...-|.++.++|+.+++....                    +...             
T Consensus        24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~L--------------------e~~~-------------   70 (932)
T KOG2053|consen   24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLL--------------------EALY-------------   70 (932)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHH--------------------hhhc-------------
Confidence            3667888888888888888888888888888877544332111                    0000             


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANI  159 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~  159 (673)
                                                    ...+++...+..+ .++..++++++|..+|++++..+|+ .+..+.+-.+
T Consensus        71 ------------------------------~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFma  119 (932)
T KOG2053|consen   71 ------------------------------GLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMA  119 (932)
T ss_pred             ------------------------------cCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHH
Confidence                                          0122333344333 3444578888888888888888888 7777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHH-HHHH---------------------------------------------HHHH
Q psy17691        160 KREQGYIEEATRLYLKALEVFPEFAA-AHSN---------------------------------------------LASV  193 (673)
Q Consensus       160 ~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~---------------------------------------------la~~  193 (673)
                      |.+.++|.+-.+.--+..+..|+++. .|.-                                             .-.+
T Consensus       120 yvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i  199 (932)
T KOG2053|consen  120 YVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI  199 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence            77777766644444444444444321 1111                                             1133


Q ss_pred             HHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        194 LQQQGKLTDALLHYKEAI--RIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~  251 (673)
                      +..+|++++|.+.+..-+  ++.+.+...-+.....+...+++.+-.+...+.+...+++
T Consensus       200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence            455677888887773322  2334444444555666777778877777777777777776

>KOG2610|consensus

Probab=97.27  E-value=0.0037  Score=63.64  Aligned_cols=147  Identities=13%  Similarity=-0.010  Sum_probs=118.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcC
Q psy17691        123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV-FPEF---AAAHSNLASVLQQQG  198 (673)
Q Consensus       123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-~p~~---~~~~~~la~~~~~~g  198 (673)
                      ...+...|++-+|....++.++..|.+.-++..--.+++..|+...-...+++.+-. +++.   ..+.-.++..+...|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            344556788999999999999999999888888888899999999999999998877 6555   566667888889999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C---HHHHHHHHHHHHHcCCCc
Q psy17691        199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG-F---ADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       199 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~-~---~~a~~~La~~~~~~g~~~  269 (673)
                      -|++|.+..++++++++.+.-+...++.++...|++.++.++..+--..-.+ .   ..-|..-+.+|.+.+.|+
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye  264 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE  264 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence            9999999999999999999999999999999999999999988764322111 1   123455677777777776

>KOG1585|consensus

Probab=97.26  E-value=0.022  Score=55.83  Aligned_cols=121  Identities=14%  Similarity=0.129  Sum_probs=66.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHH
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEV------FPEFAAAH  187 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~  187 (673)
                      +..++..+...++++|++.|++++.+-.++      .+.+...+.++.+..+|+||-..+.+-...      .++....+
T Consensus       114 leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~  193 (308)
T KOG1585|consen  114 LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAY  193 (308)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHH
Confidence            344555566667777777777777664332      334555566677777777776666554322      12223334


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691        188 SNLASVLQQQGKLTDALLHYKEAIRI----QPSFADAYSNMGNTLKEMQDIQGALQCY  241 (673)
Q Consensus       188 ~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~eA~~~~  241 (673)
                      ...-.++....+|..|..+|+...++    .+++...+.+|-..| ..|+.++....+
T Consensus       194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            44444445555777777777666554    234444555554443 345555554444

>KOG0551|consensus

Probab=97.25  E-value=0.0019  Score=65.72  Aligned_cols=103  Identities=19%  Similarity=0.211  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  225 (673)
                      +.-+..-|+-|++.++|..|+.+|.++|+..-.+    ...|.|.|.+.+..|+|..|+.-+.+++.++|.+..+++.=+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            4456667889999999999999999999885443    567899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        226 NTLKEMQDIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       226 ~~~~~~g~~~eA~~~~~~Al~l~p~~~  252 (673)
                      .|+..+.++.+|..+++..++++.+..
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            999999999999999999888765543

>PLN02448 UDP-glycosyltransferase family protein

Probab=97.25  E-value=0.003  Score=70.20  Aligned_cols=136  Identities=10%  Similarity=0.164  Sum_probs=86.7

Q ss_pred             CCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       472 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      +...++|.||+....++++.++..++-|+..+...+|.+..                                       
T Consensus       272 ~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~---------------------------------------  312 (459)
T PLN02448        272 PEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG---------------------------------------  312 (459)
T ss_pred             CCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC---------------------------------------
Confidence            34568899999888888888888899898887766664330                                       


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA  631 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~  631 (673)
                       +   ...+.+.      ..+|+.+.++.|+.+.|.. ..+..|+   .++|..|++||+++|||+|+++--.= ...-+
T Consensus       313 -~---~~~~~~~------~~~~~~v~~w~pQ~~iL~h-~~v~~fv---tHgG~nS~~eal~~GvP~l~~P~~~D-Q~~na  377 (459)
T PLN02448        313 -E---ASRLKEI------CGDMGLVVPWCDQLKVLCH-SSVGGFW---THCGWNSTLEAVFAGVPMLTFPLFWD-QPLNS  377 (459)
T ss_pred             -c---hhhHhHh------ccCCEEEeccCCHHHHhcc-CccceEE---ecCchhHHHHHHHcCCCEEecccccc-chhhH
Confidence             0   0011111      1357888899999888873 3333455   48899999999999999999874311 11112


Q ss_pred             HHHHh-cCCCccc--------cCCHHHHHHHHHHhcCCH
Q psy17691        632 SQLAT-LGCPELI--------ARTHKEYQDIAIRLGTDR  661 (673)
Q Consensus       632 ~~l~~-~gl~~~i--------a~~~~~yv~~a~~la~d~  661 (673)
                      ..+.. +|..--+        .-+.++-.+...++..|+
T Consensus       378 ~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~  416 (459)
T PLN02448        378 KLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE  416 (459)
T ss_pred             HHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence            22322 2332211        126677777777777664

>PLN02764 glycosyltransferase family protein

Probab=97.24  E-value=0.0029  Score=69.59  Aligned_cols=157  Identities=13%  Similarity=0.181  Sum_probs=94.7

Q ss_pred             CCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       472 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      +++.|+|.||+....++++-+.-.+.-|...-.--+|++..+ .++...                  ...+|        
T Consensus       255 ~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~-~~~~~~------------------~~~lp--------  307 (453)
T PLN02764        255 EPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPP-RGSSTI------------------QEALP--------  307 (453)
T ss_pred             CCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCC-CCCcch------------------hhhCC--------
Confidence            356799999999999888877777777666655577766511 111000                  00011        


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA  631 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~  631 (673)
                            +....+....|     +++.++.|+.+.|+- ..++.|+   .++|..|++||+++|||+|+++-- .-....+
T Consensus       308 ------~~f~~r~~grG-----~v~~~W~PQ~~vL~h-~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~-~DQ~~na  371 (453)
T PLN02764        308 ------EGFEERVKGRG-----VVWGGWVQQPLILSH-PSVGCFV---SHCGFGSMWESLLSDCQIVLVPQL-GDQVLNT  371 (453)
T ss_pred             ------cchHhhhccCC-----cEEeCCCCHHHHhcC-cccCeEE---ecCCchHHHHHHHcCCCEEeCCcc-cchHHHH
Confidence                  12222222222     577799999888763 4455565   489999999999999999998753 1122223


Q ss_pred             HHH-HhcCCCccc------cCCHHHHHHHHHHhcCCH-HHHHHHHhhh
Q psy17691        632 SQL-ATLGCPELI------ARTHKEYQDIAIRLGTDR-DYCEKALLYH  671 (673)
Q Consensus       632 ~~l-~~~gl~~~i------a~~~~~yv~~a~~la~d~-~~~~~~~~~~  671 (673)
                      ..+ ..+|+.--+      .-+.++-.+...++..+. +..+++|..+
T Consensus       372 ~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a  419 (453)
T PLN02764        372 RLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNH  419 (453)
T ss_pred             HHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            334 334433111      126777777777777664 5556666554

>TIGR02919 accessory Sec system glycosyltransferase GtfB

Probab=97.23  E-value=0.0026  Score=69.79  Aligned_cols=127  Identities=9%  Similarity=0.091  Sum_probs=88.8

Q ss_pred             hhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHHHcC
Q psy17691        489 PSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALG  568 (673)
Q Consensus       489 ~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  568 (673)
                      .+.++.+.++.+++|+..|-| +.                                        .......|.+. .+. 
T Consensus       291 s~~I~~i~~Lv~~lPd~~f~I-ga----------------------------------------~te~s~kL~~L-~~y-  327 (438)
T TIGR02919       291 SDQIEHLEEIVQALPDYHFHI-AA----------------------------------------LTEMSSKLMSL-DKY-  327 (438)
T ss_pred             HHHHHHHHHHHHhCCCcEEEE-Ee----------------------------------------cCcccHHHHHH-Hhc-
Confidence            889999999999999999998 41                                        11112455555 554 


Q ss_pred             CCCCeEEeccCcChHHHHHhcccccEEecCCC-CCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccc-cCC
Q psy17691        569 LDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELI-ART  646 (673)
Q Consensus       569 ~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p-~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i-a~~  646 (673)
                        .+-+.+.+.. ....-..|+.||++||+-. .+-+.++.||+..|+|||+..-.........    .   ..++ ..+
T Consensus       328 --~nvvly~~~~-~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~----~---g~l~~~~~  397 (438)
T TIGR02919       328 --DNVKLYPNIT-TQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIA----S---ENIFEHNE  397 (438)
T ss_pred             --CCcEEECCcC-hHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCccccc----C---CceecCCC
Confidence              3445555544 4556689999999999764 5669999999999999998765432221110    0   1222 257


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHH
Q psy17691        647 HKEYQDIAIRLGTDRDYCEKAL  668 (673)
Q Consensus       647 ~~~yv~~a~~la~d~~~~~~~~  668 (673)
                      .++.+++.+.+.+|++.+++..
T Consensus       398 ~~~m~~~i~~lL~d~~~~~~~~  419 (438)
T TIGR02919       398 VDQLISKLKDLLNDPNQFRELL  419 (438)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHH
Confidence            8999999999999997766543

Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.22  E-value=0.014  Score=55.44  Aligned_cols=117  Identities=21%  Similarity=0.091  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691        134 EAEECYNTALRLCPTHAD---SLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHY  207 (673)
Q Consensus       134 ~A~~~~~~al~~~p~~~~---a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~  207 (673)
                      +.....++....++....   +...++..+.+.|++++|+..++.++....+.   .-+-.+|+.+...+|++++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            344444444444544422   34567888999999999999999999764443   456788999999999999999988


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        208 KEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       208 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~  251 (673)
                      ...-..+ -.+..-...|.++...|+-++|+..|+++++.+++.
T Consensus       150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            7542211 112345678999999999999999999999997543

>PLN02167 UDP-glycosyltransferase family protein

Probab=97.22  E-value=0.0041  Score=69.36  Aligned_cols=152  Identities=18%  Similarity=0.225  Sum_probs=90.7

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      .+.++|.||+....++++.++-.+.-|++.+...+|.++.+..+....                  ..       |   .
T Consensus       279 ~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~------------------~~-------~---l  330 (475)
T PLN02167        279 ESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASP------------------YE-------P---L  330 (475)
T ss_pred             CCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccch------------------hh-------h---C
Confidence            457899999988888998999999999999888888765210000000                  00       0   0


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--CcchhhhH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRVA  630 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~  630 (673)
                      +    +.+.++     + .+|..+.++.|+.+.|+- ..++.|+   .++|-+|++||+++|||+|+++-  +++..-  
T Consensus       331 p----~~~~er-----~-~~rg~v~~w~PQ~~iL~h-~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na--  394 (475)
T PLN02167        331 P----EGFMDR-----V-MGRGLVCGWAPQVEILAH-KAIGGFV---SHCGWNSVLESLWFGVPIATWPMYAEQQLNA--  394 (475)
T ss_pred             C----hHHHHH-----h-ccCeeeeccCCHHHHhcC-cccCeEE---eeCCcccHHHHHHcCCCEEeccccccchhhH--
Confidence            1    112221     1 256666799998887752 3355555   48899999999999999999854  333321  


Q ss_pred             HHHHHhcCCCccc----------cCCHHHHHHHHHHhcCCH-HHHHHHH
Q psy17691        631 ASQLATLGCPELI----------ARTHKEYQDIAIRLGTDR-DYCEKAL  668 (673)
Q Consensus       631 ~~~l~~~gl~~~i----------a~~~~~yv~~a~~la~d~-~~~~~~~  668 (673)
                      .-++..+|..--+          .-+.++..+...++..+. +.|++.+
T Consensus       395 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~  443 (475)
T PLN02167        395 FTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVK  443 (475)
T ss_pred             HHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHH
Confidence            1124444433111          115666666666665433 4444433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.22  E-value=0.0025  Score=66.00  Aligned_cols=118  Identities=16%  Similarity=0.104  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        152 SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ-QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE  230 (673)
Q Consensus       152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  230 (673)
                      +|..+.....+.+..++|...|++|++..+....+|...|.+.+. .++.+.|.+.|+.+++..|.+...|..+...+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            567777888888889999999999997767778999999999777 5666779999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCCc
Q psy17691        231 MQDIQGALQCYSRAIQINPGFA---DAHSNLASIHKDSGKRG  269 (673)
Q Consensus       231 ~g~~~eA~~~~~~Al~l~p~~~---~a~~~La~~~~~~g~~~  269 (673)
                      .++.+.|...|++++..-+...   .+|......-.+.|+.+
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~  124 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE  124 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999999998876654   57777777777777654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional

Probab=97.21  E-value=0.0019  Score=75.99  Aligned_cols=141  Identities=18%  Similarity=0.120  Sum_probs=93.2

Q ss_pred             CcEEEecCCccc--ccChhhHHHHHHHHhcccC----eeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691        474 DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPN----SILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL  547 (673)
Q Consensus       474 ~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (673)
                      +..++++++|+.  |..+..++++.++++..|+    .+|++++.+..                                
T Consensus       264 ~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr--------------------------------  311 (726)
T PRK14501        264 GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSR--------------------------------  311 (726)
T ss_pred             CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCC--------------------------------
Confidence            566788888776  8999999999999999996    57777652100                                


Q ss_pred             hhccCCh-hhhhhHHHHHHHc--------CCC-C-CeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhc--
Q psy17691        548 WLLKFPA-VGEANIQATAQAL--------GLD-Q-HRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWT--  613 (673)
Q Consensus       548 ~~~~~~~-~~~~~~~~~~~~~--------g~~-~-~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~--  613 (673)
                           .+ +..+.+++.+.+.        |.. - ..+.|.+.+++++..++|+.+|||+-|. -.+=+.+++|||++  
T Consensus       312 -----~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~  386 (726)
T PRK14501        312 -----TGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRT  386 (726)
T ss_pred             -----cchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcC
Confidence                 11 2233444444332        321 1 1345778899999999999999998765 55669999999999  


Q ss_pred             ---CCceeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCH
Q psy17691        614 ---GTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR  661 (673)
Q Consensus       614 ---GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~  661 (673)
                         |+||++-.....      ..+.    ..++.  .|.++..+...++.+++
T Consensus       387 ~~~g~~vls~~~G~~------~~l~----~~llv~P~d~~~la~ai~~~l~~~  429 (726)
T PRK14501        387 DGDGVLILSEMAGAA------AELA----EALLVNPNDIEGIAAAIKRALEMP  429 (726)
T ss_pred             CCCceEEEecccchh------HHhC----cCeEECCCCHHHHHHHHHHHHcCC
Confidence               556665332111      1111    12332  47888888887777653

>PLN02207 UDP-glycosyltransferase

Probab=97.18  E-value=0.0038  Score=69.09  Aligned_cols=105  Identities=18%  Similarity=0.323  Sum_probs=74.5

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      +..++|.||+...+++.+.++..+.-|...+...+|.++.+.....                            .|   .
T Consensus       274 ~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~----------------------------~~---l  322 (468)
T PLN02207        274 EASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTND----------------------------DL---L  322 (468)
T ss_pred             CCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCcccc----------------------------cc---C
Confidence            4579999999999999999999999999999988887651100000                            00   0


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                      +    +.+.++     + .+|+.+.++.|+.+.|+- ..+..|+   .++|-+|++||+++|||+|+++-
T Consensus       323 p----~~f~er-----~-~~~g~i~~W~PQ~~IL~H-~~vg~Fv---TH~GwnS~~Eai~~GVP~l~~P~  378 (468)
T PLN02207        323 P----EGFLDR-----V-SGRGMICGWSPQVEILAH-KAVGGFV---SHCGWNSIVESLWFGVPIVTWPM  378 (468)
T ss_pred             C----HHHHhh-----c-CCCeEEEEeCCHHHHhcc-cccceee---ecCccccHHHHHHcCCCEEecCc
Confidence            1    111111     2 367777799999988864 3344454   58899999999999999999863

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.17  E-value=0.0058  Score=67.93  Aligned_cols=118  Identities=19%  Similarity=0.127  Sum_probs=95.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q psy17691        130 IQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----AAAHSNLASVLQQQGKLTDALL  205 (673)
Q Consensus       130 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~  205 (673)
                      ...+.|.++++...+..|+..-..+..|.++...|+.++|++.|++++......    .-.++.++.++..+.+|++|.+
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            367889999999999999999999999999999999999999999988543322    4567889999999999999999


Q ss_pred             HHHHHHHhCCCCH-HHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q psy17691        206 HYKEAIRIQPSFA-DAYSNMGNTLKEMQDI-------QGALQCYSRAIQI  247 (673)
Q Consensus       206 ~~~~al~~~p~~~-~~~~~lg~~~~~~g~~-------~eA~~~~~~Al~l  247 (673)
                      ++.+..+.+.-.. -..+..|.|+...|+.       ++|.+.|+++-.+
T Consensus       327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            9999988765533 3456678888899988       6666666665443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN00164 glucosyltransferase; Provisional

Probab=97.16  E-value=0.0029  Score=70.53  Aligned_cols=161  Identities=16%  Similarity=0.245  Sum_probs=94.3

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      ...++|.||+....++.+.++-.+.-|++.+...||.+..+...+  ..++        .  ...              .
T Consensus       271 ~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~--~~~~--------~--~~~--------------~  324 (480)
T PLN00164        271 PASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAG--SRHP--------T--DAD--------------L  324 (480)
T ss_pred             CCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccc--cccc--------c--ccc--------------h
Confidence            457899999998999999999999999999888888776221000  0000        0  000              0


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecC--CCcchhhhH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP--GETLASRVA  630 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~  630 (673)
                      ...-.+....+.+.     .-+++.++.|+.+.|.- ..+-.|+   .++|-.|++||+++|||+|+++  ++++..   
T Consensus       325 ~~~lp~~~~~~~~~-----~g~~v~~w~PQ~~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~N---  392 (480)
T PLN00164        325 DELLPEGFLERTKG-----RGLVWPTWAPQKEILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQHLN---  392 (480)
T ss_pred             hhhCChHHHHHhcC-----CCeEEeecCCHHHHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccchhH---
Confidence            00000112222211     12567789998888773 2233444   4789999999999999999986  333322   


Q ss_pred             HH-HHHhcCCCcccc--------CCHHHHHHHHHHhcCCHH-HHHHHHhhh
Q psy17691        631 AS-QLATLGCPELIA--------RTHKEYQDIAIRLGTDRD-YCEKALLYH  671 (673)
Q Consensus       631 ~~-~l~~~gl~~~ia--------~~~~~yv~~a~~la~d~~-~~~~~~~~~  671 (673)
                      +. +...+|..-.+.        -+.++-.+...++..|.+ ..+++|..+
T Consensus       393 a~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a  443 (480)
T PLN00164        393 AFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKA  443 (480)
T ss_pred             HHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            22 334455543221        145666666667776653 345555544

>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional

Probab=97.15  E-value=0.0055  Score=68.88  Aligned_cols=139  Identities=16%  Similarity=0.243  Sum_probs=94.3

Q ss_pred             cEEEecCCccc---ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        475 AIVYCNFNQLY---KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       475 ~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      .++|.||+...   ++.++.++...+.+++.|.-.+|-.+                                        
T Consensus       297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~----------------------------------------  336 (507)
T PHA03392        297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYD----------------------------------------  336 (507)
T ss_pred             cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEEC----------------------------------------
Confidence            46666666554   56788888888888888864444222                                        


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA  631 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~  631 (673)
                        +...       . .++ +++|.+.+++|+.+.|+ +..+++|+.   ++|..|+.||++.|||+|.++--. =...-+
T Consensus       337 --~~~~-------~-~~~-p~Nv~i~~w~Pq~~lL~-hp~v~~fIt---HGG~~s~~Eal~~GvP~v~iP~~~-DQ~~Na  400 (507)
T PHA03392        337 --GEVE-------A-INL-PANVLTQKWFPQRAVLK-HKNVKAFVT---QGGVQSTDEAIDALVPMVGLPMMG-DQFYNT  400 (507)
T ss_pred             --CCcC-------c-ccC-CCceEEecCCCHHHHhc-CCCCCEEEe---cCCcccHHHHHHcCCCEEECCCCc-cHHHHH
Confidence              0000       0 234 58899999999888774 356788864   899999999999999999987531 112223


Q ss_pred             HHHHhcCCCcccc---CCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691        632 SQLATLGCPELIA---RTHKEYQDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       632 ~~l~~~gl~~~ia---~~~~~yv~~a~~la~d~~~~~~~~~  669 (673)
                      ..+...|....+-   -|.++..+...++.+|+..++..++
T Consensus       401 ~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~  441 (507)
T PHA03392        401 NKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKE  441 (507)
T ss_pred             HHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3445667653332   2677777777788889888877664

>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule

Probab=97.15  E-value=0.0037  Score=70.48  Aligned_cols=138  Identities=14%  Similarity=0.308  Sum_probs=89.9

Q ss_pred             CCcEEEecCCccccc-ChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        473 EDAIVYCNFNQLYKI-DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      +..++|.||+...+. ..+.++..++.+++.|...+|-..                                        
T Consensus       275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~----------------------------------------  314 (500)
T PF00201_consen  275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYE----------------------------------------  314 (500)
T ss_dssp             TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEET----------------------------------------
T ss_pred             CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccc----------------------------------------
Confidence            567899999987654 444588999999999997777443                                        


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--Ccchhhh
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRV  629 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~  629 (673)
                        +....         .+ ++.+.+..++|+.+.|+ +..+++|+.   ++|-+|+.||++.|||+|+++-  +.+   .
T Consensus       315 --~~~~~---------~l-~~n~~~~~W~PQ~~lL~-hp~v~~fit---HgG~~s~~Ea~~~gvP~l~~P~~~DQ~---~  375 (500)
T PF00201_consen  315 --GEPPE---------NL-PKNVLIVKWLPQNDLLA-HPRVKLFIT---HGGLNSTQEALYHGVPMLGIPLFGDQP---R  375 (500)
T ss_dssp             --CSHGC---------HH-HTTEEEESS--HHHHHT-STTEEEEEE---S--HHHHHHHHHCT--EEE-GCSTTHH---H
T ss_pred             --ccccc---------cc-cceEEEeccccchhhhh-cccceeeee---ccccchhhhhhhccCCccCCCCcccCC---c
Confidence              10001         11 35678889999988887 555677764   8999999999999999999864  333   2


Q ss_pred             HHHHHHhcCCCcccc---CCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691        630 AASQLATLGCPELIA---RTHKEYQDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       630 ~~~~l~~~gl~~~ia---~~~~~yv~~a~~la~d~~~~~~~~~  669 (673)
                      -+..+...|....+-   -|.++..+...++.+|+.+++..++
T Consensus       376 na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~~~a~~  418 (500)
T PF00201_consen  376 NAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPSYKENAKR  418 (500)
T ss_dssp             HHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             cceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence            234566667653222   2678888888888889887776654

This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....

>PLN02208 glycosyltransferase family protein

Probab=97.15  E-value=0.0053  Score=67.67  Aligned_cols=152  Identities=11%  Similarity=0.208  Sum_probs=89.8

Q ss_pred             CCcEEEecCCcccccChh-hHHHHHHH-HhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhc
Q psy17691        473 EDAIVYCNFNQLYKIDPS-TLQMWVNV-LKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLL  550 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~-~~~~~~~i-l~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (673)
                      ++.|+|.||+...+++++ +.++...+ ....|.  +|++..+ .+....                  ...+        
T Consensus       250 ~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~-~~~~~~------------------~~~l--------  300 (442)
T PLN02208        250 PKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPP-RGSSTV------------------QEGL--------  300 (442)
T ss_pred             CCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCC-Ccccch------------------hhhC--------
Confidence            457999999999998888 67766665 666665  4554411 000000                  0000        


Q ss_pred             cCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--Ccchhh
Q psy17691        551 KFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASR  628 (673)
Q Consensus       551 ~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r  628 (673)
                        +    +....+...     ..+++.++.|+.+.|+- ..+..|+   .++|-+|++||+++|||+|+++-  +++.  
T Consensus       301 --p----~~f~~r~~~-----~g~~v~~W~PQ~~iL~H-~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~~--  363 (442)
T PLN02208        301 --P----EGFEERVKG-----RGVVWGGWVQQPLILDH-PSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQVL--  363 (442)
T ss_pred             --C----HHHHHHHhc-----CCcEeeccCCHHHHhcC-CccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhHH--
Confidence              1    122233222     23577899999887763 3344455   48999999999999999999864  3332  


Q ss_pred             hHHHHHH-hcCCCcccc------CCHHHHHHHHHHhcCCH-HHHHHHHhhh
Q psy17691        629 VAASQLA-TLGCPELIA------RTHKEYQDIAIRLGTDR-DYCEKALLYH  671 (673)
Q Consensus       629 ~~~~~l~-~~gl~~~ia------~~~~~yv~~a~~la~d~-~~~~~~~~~~  671 (673)
                       .+.++. .+|+.--+-      -+.++-.+...++..|. +..+++|.++
T Consensus       364 -na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~  413 (442)
T PLN02208        364 -FTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNH  413 (442)
T ss_pred             -HHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence             223333 355542221      15666666565666655 4556666654

>PLN02992 coniferyl-alcohol glucosyltransferase

Probab=97.13  E-value=0.0034  Score=69.68  Aligned_cols=161  Identities=14%  Similarity=0.244  Sum_probs=92.4

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      .+.|+|.||+....++.+.++-.+.-|++.|...||.+..+..++..  ...+-..  +......+.+..|         
T Consensus       262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~--~~~~~~~--~~~~~~~~~~~lp---------  328 (481)
T PLN02992        262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSAC--SAYFSAN--GGETRDNTPEYLP---------  328 (481)
T ss_pred             CCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccc--cccccCc--ccccccchhhhCC---------
Confidence            45799999999999999999999999999999999987522101000  0000000  0000000000000         


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAAS  632 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~  632 (673)
                           ++..++     +.-..+++.++.|+.+.|.- ..+..|+   .++|.+|++||+++|||+|+++--. -...-+.
T Consensus       329 -----~~f~eR-----~~~rg~vv~~W~PQ~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~-DQ~~na~  393 (481)
T PLN02992        329 -----EGFVSR-----THDRGFVVPSWAPQAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFA-EQNMNAA  393 (481)
T ss_pred             -----HHHHHH-----hcCCCEEEeecCCHHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccc-hhHHHHH
Confidence                 122222     21124788899998887763 2222233   5899999999999999999986421 1112223


Q ss_pred             HH-HhcCCCcccc-----CCHHHHHHHHHHhcCCH
Q psy17691        633 QL-ATLGCPELIA-----RTHKEYQDIAIRLGTDR  661 (673)
Q Consensus       633 ~l-~~~gl~~~ia-----~~~~~yv~~a~~la~d~  661 (673)
                      .+ ..+|+.-.+.     -+.++..+...++..+.
T Consensus       394 ~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~  428 (481)
T PLN02992        394 LLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEE  428 (481)
T ss_pred             HHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCC
Confidence            33 3455543331     25666666666776653

>KOG2047|consensus

Probab=97.11  E-value=0.091  Score=58.19  Aligned_cols=154  Identities=15%  Similarity=0.201  Sum_probs=90.2

Q ss_pred             hcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--
Q psy17691        111 ALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRL-CPTH-----ADSLNNLANIKREQGYIEEATRLYLKALEVFPE--  182 (673)
Q Consensus       111 ~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~-----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--  182 (673)
                      ..+|++...|..... +..|+..+-+..|.+|++. +|..     ...|..+|..|...|+.+.|...|+++.+..=.  
T Consensus       343 RQn~~nV~eW~kRV~-l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v  421 (835)
T KOG2047|consen  343 RQNPHNVEEWHKRVK-LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV  421 (835)
T ss_pred             hcCCccHHHHHhhhh-hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence            344555444433222 2245566666666666653 4432     346667777777777777777777777665422  


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691        183 --FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS------------------FADAYSNMGNTLKEMQDIQGALQCYS  242 (673)
Q Consensus       183 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------------------~~~~~~~lg~~~~~~g~~~eA~~~~~  242 (673)
                        -..+|.+.|..-....+++.|+++.++|...-.+                  +..+|..++......|-++.-...|.
T Consensus       422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd  501 (835)
T KOG2047|consen  422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD  501 (835)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence              1456666666666666777777766666543111                  12355666666666666666666666


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        243 RAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       243 ~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      +.+.+.--.+....|.|..+.+.
T Consensus       502 riidLriaTPqii~NyAmfLEeh  524 (835)
T KOG2047|consen  502 RIIDLRIATPQIIINYAMFLEEH  524 (835)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhh
Confidence            66666666666666666655443

>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis

Probab=97.11  E-value=0.0025  Score=70.94  Aligned_cols=106  Identities=8%  Similarity=-0.001  Sum_probs=66.0

Q ss_pred             hhHHHHHHHcCCC---CCe--EEeccC-cC------hHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCc
Q psy17691        558 ANIQATAQALGLD---QHR--ILFSNV-AA------KEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGET  624 (673)
Q Consensus       558 ~~~~~~~~~~g~~---~~r--v~~~~~-~~------~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~  624 (673)
                      +.+...+.+.|+-   .+|  |+|.|. ++      ..++...|+.||+++-|. -++-|.|.+|||+||+||||-....
T Consensus       429 D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~g  508 (590)
T cd03793         429 DPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSG  508 (590)
T ss_pred             CHHHHHHHHhcCcCCCCCeEEEEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcc
Confidence            4455556666654   345  577763 22      235777788999997754 5566999999999999999987765


Q ss_pred             chhhhHHHHHHhcCC----Cccc--------cCCHHHHHHHHHHhcCCHHHHHHHH
Q psy17691        625 LASRVAASQLATLGC----PELI--------ARTHKEYQDIAIRLGTDRDYCEKAL  668 (673)
Q Consensus       625 ~~~r~~~~~l~~~gl----~~~i--------a~~~~~yv~~a~~la~d~~~~~~~~  668 (673)
                      +..=+    -..+|-    .-+|        ..+.++..+...++++. +.|+.+.
T Consensus       509 f~~~v----~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~~-~~r~~~~  559 (590)
T cd03793         509 FGCFM----EEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEFCQL-SRRQRII  559 (590)
T ss_pred             hhhhh----HHHhccCCCceEEEecCCccchHHHHHHHHHHHHHHhCC-cHHHHHH
Confidence            53211    112221    1123        24567777777777744 4444443

GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.

>PLN02210 UDP-glucosyl transferase

Probab=97.11  E-value=0.005  Score=68.20  Aligned_cols=140  Identities=15%  Similarity=0.266  Sum_probs=89.7

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      +..++|.||+...+.+++.++..+.-|+..+...+|.++.+.                                      
T Consensus       268 ~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~--------------------------------------  309 (456)
T PLN02210        268 RSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKE--------------------------------------  309 (456)
T ss_pred             CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCc--------------------------------------
Confidence            346899999999999999999999999999887777665100                                      


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--CcchhhhH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRVA  630 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~  630 (673)
                      .+   ... ..+.+. +..+|.++.++.|+.+.|.. ..+..|+   .++|-+|++||+++|||+|+++-  +++   +.
T Consensus       310 ~~---~~~-~~~~~~-~~~~~g~v~~w~PQ~~iL~h-~~vg~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ~---~n  377 (456)
T PLN02210        310 KA---QNV-QVLQEM-VKEGQGVVLEWSPQEKILSH-MAISCFV---THCGWNSTIETVVAGVPVVAYPSWTDQP---ID  377 (456)
T ss_pred             cc---cch-hhHHhh-ccCCCeEEEecCCHHHHhcC-cCcCeEE---eeCCcccHHHHHHcCCCEEecccccccH---HH
Confidence            00   000 112221 11255566799999887763 3344555   47899999999999999999874  333   22


Q ss_pred             HHHHHh-cCCCcccc-------CCHHHHHHHHHHhcCCHH
Q psy17691        631 ASQLAT-LGCPELIA-------RTHKEYQDIAIRLGTDRD  662 (673)
Q Consensus       631 ~~~l~~-~gl~~~ia-------~~~~~yv~~a~~la~d~~  662 (673)
                      +..+.. +|..-.+.       -+.++-.+...++..|.+
T Consensus       378 a~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~  417 (456)
T PLN02210        378 ARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPA  417 (456)
T ss_pred             HHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCch
Confidence            334443 44432221       256666666666666643

>PLN03015 UDP-glucosyl transferase

Probab=97.09  E-value=0.005  Score=68.02  Aligned_cols=117  Identities=18%  Similarity=0.237  Sum_probs=76.1

Q ss_pred             CCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       472 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      ++..|+|.||+....++++.++-.+.-|...+...||.+..+.........         .  ....-+.+|        
T Consensus       265 ~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~---------~--~~~~~~~lp--------  325 (470)
T PLN03015        265 GERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSS---------D--DDQVSASLP--------  325 (470)
T ss_pred             CCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccc---------c--ccchhhcCC--------
Confidence            345899999999999999999999999999999999977522100000000         0  000000001        


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                            +++.++...+|     +++.++.|+.+.|. +..+-.|+   .++|-+|++||+++|||+|+++-
T Consensus       326 ------~~f~er~~~rG-----l~v~~W~PQ~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P~  381 (470)
T PLN03015        326 ------EGFLDRTRGVG-----LVVTQWAPQVEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWPL  381 (470)
T ss_pred             ------hHHHHhhccCc-----eEEEecCCHHHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEeccc
Confidence                  12222222222     56779999988887 34444455   47899999999999999999864

>KOG3617|consensus

Probab=97.09  E-value=0.042  Score=62.07  Aligned_cols=129  Identities=16%  Similarity=0.210  Sum_probs=82.6

Q ss_pred             ChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691        116 DGTTFSYIISVLL-LIQVSEAEECYNTALRLC---------------------PTHADSLNNLANIKREQGYIEEATRLY  173 (673)
Q Consensus       116 ~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~---------------------p~~~~a~~~Lg~~~~~~g~~~eA~~~~  173 (673)
                      +...|..-+.|+. .|+.+.|+.+|..|-...                     ..+-.+.+.||..|...|++.+|+..|
T Consensus       911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~Ff  990 (1416)
T KOG3617|consen  911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFF  990 (1416)
T ss_pred             chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            3455555555554 889999999988875542                     345567889999999999999999998


Q ss_pred             HHHHh------hCCCC--HHHH------------HHHHHHHHHcC-CHHHHHHHHHHH------HH--------------
Q psy17691        174 LKALE------VFPEF--AAAH------------SNLASVLQQQG-KLTDALLHYKEA------IR--------------  212 (673)
Q Consensus       174 ~~al~------~~p~~--~~~~------------~~la~~~~~~g-~~~eA~~~~~~a------l~--------------  212 (673)
                      .+|-.      +..+|  .+-+            ...+..|...| +...|...|-+|      ++              
T Consensus       991 TrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen  991 TRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence            87743      33222  1111            11233344444 455555544432      22              


Q ss_pred             ---hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        213 ---IQP-SFADAYSNMGNTLKEMQDIQGALQCYSRA  244 (673)
Q Consensus       213 ---~~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~A  244 (673)
                         ++| .++..+..-+..+....+|++|...+-.+
T Consensus      1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence               123 36788888889999999999998754433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.06  E-value=0.015  Score=53.67  Aligned_cols=88  Identities=33%  Similarity=0.271  Sum_probs=70.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy17691        126 VLLLIQVSEAEECYNTALRLCPTH----------------------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF  183 (673)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~----------------------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~  183 (673)
                      ....++.+.++..+++++.+....                      ..+...++..+...|++++|+..+++++..+|.+
T Consensus        16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~   95 (146)
T PF03704_consen   16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD   95 (146)
T ss_dssp             HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Confidence            345678889999999999875221                      2356677888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        184 AAAHSNLASVLQQQGKLTDALLHYKEAIRI  213 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~  213 (673)
                      ..+|..+-.+|...|+..+|++.|++..+.
T Consensus        96 E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   96 EEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999987543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0530|consensus

Probab=97.04  E-value=0.0095  Score=58.93  Aligned_cols=175  Identities=15%  Similarity=0.118  Sum_probs=140.1

Q ss_pred             ChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy17691        116 DGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG-YIEEATRLYLKALEVFPEFAAAHSNLASV  193 (673)
Q Consensus       116 ~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~  193 (673)
                      ..+.+.+..+.+. ..+-..|+++-+.++.++|.+..+|...-.++..++ +..+-++++.+.++-+|++..+|...-.+
T Consensus        42 fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~i  121 (318)
T KOG0530|consen   42 FRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVI  121 (318)
T ss_pred             HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence            3445555555554 447789999999999999999999988888776654 67888899999999999999999999999


Q ss_pred             HHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCc--
Q psy17691        194 LQQQGKLT-DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS-GKRG--  269 (673)
Q Consensus       194 ~~~~g~~~-eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~-g~~~--  269 (673)
                      ....|++. .-++..+.++..+.++-.+|...-.++..-+.++.-+.+..+.++.+-.+-.+|...-.+.... |-.+  
T Consensus       122 ve~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~  201 (318)
T KOG0530|consen  122 VELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKA  201 (318)
T ss_pred             HHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHH
Confidence            99999988 8899999999999999999999999999999999999999999999887777776543322221 1111  


Q ss_pred             ------------cccCCCCHHHHHHH-HHHhhcc
Q psy17691        270 ------------FFIRTDLNSAYFWL-LLLDAHS  290 (673)
Q Consensus       270 ------------l~l~p~~~~a~~~l-~~~~~~~  290 (673)
                                  +.+.|+|.+++..| |+...+.
T Consensus       202 ~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~  235 (318)
T KOG0530|consen  202 ELERELNYTKDKILLVPNNESAWNYLKGLLELDS  235 (318)
T ss_pred             HHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcc
Confidence                        67889999998665 4554443

>KOG2047|consensus

Probab=97.04  E-value=0.12  Score=57.19  Aligned_cols=143  Identities=16%  Similarity=0.176  Sum_probs=112.3

Q ss_pred             hHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------
Q psy17691        118 TTFSYIISVL-LLIQVSEAEECYNTALRLCPTH----ADSLNNLANIKREQGYIEEATRLYLKALEVFPE----------  182 (673)
Q Consensus       118 ~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~----------  182 (673)
                      ..|...+.++ ..|+.+.|...|+++++..-..    +.+|.+.|..-.+..+++.|.++.++|...-..          
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            4454444444 5889999999999998875332    568888898888899999999999988765211          


Q ss_pred             --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH
Q psy17691        183 --------FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN--PGFA  252 (673)
Q Consensus       183 --------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~--p~~~  252 (673)
                              +..+|..++......|-++.....|.+.+++.--.+..-.|.|..+....-+++|.+.|++.+.+.  |.-.
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~  547 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY  547 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence                    135677888888888999999999999999988888899999999999999999999999988874  5556


Q ss_pred             HHHHHHHH
Q psy17691        253 DAHSNLAS  260 (673)
Q Consensus       253 ~a~~~La~  260 (673)
                      ++|...-.
T Consensus       548 diW~tYLt  555 (835)
T KOG2047|consen  548 DIWNTYLT  555 (835)
T ss_pred             HHHHHHHH
Confidence            77765443

>PLN02534 UDP-glycosyltransferase

Probab=97.02  E-value=0.0048  Score=68.76  Aligned_cols=107  Identities=17%  Similarity=0.299  Sum_probs=72.9

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      ...|+|.||+....++++.+.-.+.-|+..+...||.+..+...                                    
T Consensus       282 ~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~------------------------------------  325 (491)
T PLN02534        282 PRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKH------------------------------------  325 (491)
T ss_pred             CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccc------------------------------------
Confidence            45899999999999998888777788999999888877511000                                    


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccE--EecCCCCCCcchhhhhhhcCCceeecCC
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADV--CLDTPLCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di--~Ld~~p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                      +......+-+-|.+. +...++++.++.|+.+.|..   .++  |+   .++|.+|++||+++|||+|+++.
T Consensus       326 ~~~~~~~~p~gf~~~-~~~~g~~v~~w~pq~~iL~h---~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~  390 (491)
T PLN02534        326 SELEEWLVKENFEER-IKGRGLLIKGWAPQVLILSH---PAIGGFL---THCGWNSTIEGICSGVPMITWPL  390 (491)
T ss_pred             cchhhhcCchhhHHh-hccCCeeccCCCCHHHHhcC---CccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence            000000000112211 12356788899998887663   333  33   58999999999999999999976

>KOG1585|consensus

Probab=96.99  E-value=0.045  Score=53.77  Aligned_cols=128  Identities=20%  Similarity=0.258  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHH
Q psy17691        118 TTFSYIISVLL-LIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVF-----PEFAA  185 (673)
Q Consensus       118 ~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-----p~~~~  185 (673)
                      ..+..+...++ .+++++|..++.+|.+-..++      +.++-..+.+..+...+.|+..+|++|..+.     |+-..
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA  111 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA  111 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence            34555555554 789999999999999776554      3456677888889999999999999998874     44444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSF------ADAYSNMGNTLKEMQDIQGALQCYSRAI  245 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~Al  245 (673)
                      .-...+--..+..+.++|++.|++++.+-.++      .+.+...+.++.+..++++|-..+.+-.
T Consensus       112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~  177 (308)
T KOG1585|consen  112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG  177 (308)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence            44445555566788999999999998874332      3566778889999999999988877643

>PLN02555 limonoid glucosyltransferase

Probab=96.99  E-value=0.0054  Score=68.20  Aligned_cols=152  Identities=14%  Similarity=0.208  Sum_probs=92.6

Q ss_pred             CcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCC
Q psy17691        474 DAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFP  553 (673)
Q Consensus       474 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (673)
                      ..++|.||+....++++.+.-.+.-|...+...||.++... ++.                                   
T Consensus       277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~-~~~-----------------------------------  320 (480)
T PLN02555        277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPH-KDS-----------------------------------  320 (480)
T ss_pred             CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCc-ccc-----------------------------------
Confidence            46899999988899998888888888888887777654110 000                                   


Q ss_pred             hhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--CcchhhhHH
Q psy17691        554 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRVAA  631 (673)
Q Consensus       554 ~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~  631 (673)
                      ......+-+-+.+ .+ .+|+.+.++.|+.+.|+ +..+..|+   .++|-.|++||+++|||+|+++-  +++..   +
T Consensus       321 ~~~~~~lp~~~~~-~~-~~~g~v~~W~PQ~~iL~-H~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~N---a  391 (480)
T PLN02555        321 GVEPHVLPEEFLE-KA-GDKGKIVQWCPQEKVLA-HPSVACFV---THCGWNSTMEALSSGVPVVCFPQWGDQVTD---A  391 (480)
T ss_pred             cchhhcCChhhhh-hc-CCceEEEecCCHHHHhC-CCccCeEE---ecCCcchHHHHHHcCCCEEeCCCccccHHH---H
Confidence            0000001111111 22 46788889999888765 34566665   48899999999999999999864  33322   2


Q ss_pred             HHHH-hcCCCcccc--------CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        632 SQLA-TLGCPELIA--------RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       632 ~~l~-~~gl~~~ia--------~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      .++. .+|+.-.+.        -+.++..+...++..+.+ -+++|.++
T Consensus       392 ~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~-g~~~r~ra  439 (480)
T PLN02555        392 VYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEK-AAELKQNA  439 (480)
T ss_pred             HHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCch-HHHHHHHH
Confidence            2232 335443221        156666666667665532 34555544

>TIGR03492 conserved hypothetical protein

Probab=96.95  E-value=0.0087  Score=65.22  Aligned_cols=103  Identities=17%  Similarity=0.230  Sum_probs=69.8

Q ss_pred             hhHHHHHHHcCCCCC-------------eEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc
Q psy17691        558 ANIQATAQALGLDQH-------------RILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET  624 (673)
Q Consensus       558 ~~~~~~~~~~g~~~~-------------rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~  624 (673)
                      +.+++.+.+.|+...             .+.+.+.  ..+....|..+|+++-.    .||+|.|++.+|+|+|.++++.
T Consensus       252 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~~ADlvI~r----SGt~T~E~a~lg~P~Ilip~~~  325 (396)
T TIGR03492       252 EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG--RGAFAEILHWADLGIAM----AGTATEQAVGLGKPVIQLPGKG  325 (396)
T ss_pred             HHHHHHHHhcCceecCCccccchhhccCceEEEec--hHhHHHHHHhCCEEEEC----cCHHHHHHHHhCCCEEEEeCCC
Confidence            445565666666421             2444332  35677888999999877    4466699999999999998653


Q ss_pred             chhhhHHHHHHhc----CCCccc-cCCHHHHHHHHHHhcCCHHHHHHHH
Q psy17691        625 LASRVAASQLATL----GCPELI-ARTHKEYQDIAIRLGTDRDYCEKAL  668 (673)
Q Consensus       625 ~~~r~~~~~l~~~----gl~~~i-a~~~~~yv~~a~~la~d~~~~~~~~  668 (673)
                      +  ..++.++...    |-.-.+ -.+.+...+...++.+|++.+.+++
T Consensus       326 ~--q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~~~~~~  372 (396)
T TIGR03492       326 P--QFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPELLERCR  372 (396)
T ss_pred             C--HHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHHHHHHH
Confidence            3  2355555542    433333 3457888888889999999887776

This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.

>KOG0530|consensus

Probab=96.93  E-value=0.036  Score=54.94  Aligned_cols=160  Identities=16%  Similarity=0.098  Sum_probs=132.2

Q ss_pred             HHHHhcCCCChhHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCC
Q psy17691        107 IFCYALSPDDGTTFSYIISVLL--LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE-EATRLYLKALEVFPEF  183 (673)
Q Consensus       107 ~~~~~l~p~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~-eA~~~~~~al~~~p~~  183 (673)
                      ..++.++|.+-..|.+...++.  ..+..+-++++.+.++.+|++..+|...-.+....|+.. .-++..++++..+.++
T Consensus        67 ~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKN  146 (318)
T KOG0530|consen   67 EDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKN  146 (318)
T ss_pred             HHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccc
Confidence            3456678888888866655543  457888999999999999999999999999999999888 8889999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE-MQ-----DIQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g-----~~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      .-+|...-.++..-+.++.-+.+..+.|+.+-.+-.+|+..-.+... .|     ..+.-+.+..+.+.+.|++..+|..
T Consensus       147 YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnY  226 (318)
T KOG0530|consen  147 YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNY  226 (318)
T ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHH
Confidence            99999999999999999999999999999987777777654433333 12     2345567888999999999999999


Q ss_pred             HHHHHHH-cC
Q psy17691        258 LASIHKD-SG  266 (673)
Q Consensus       258 La~~~~~-~g  266 (673)
                      |.-++.. .|
T Consensus       227 L~G~l~~d~g  236 (318)
T KOG0530|consen  227 LKGLLELDSG  236 (318)
T ss_pred             HHHHHHhccC
Confidence            9888875 44

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.92  E-value=0.1  Score=54.21  Aligned_cols=131  Identities=22%  Similarity=0.203  Sum_probs=105.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC------
Q psy17691        130 IQVSEAEECYNTALRLCPTHADSLNNLANIKRE----QGYIEEATRLYLKALEVFPEF-AAAHSNLASVLQQQG------  198 (673)
Q Consensus       130 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~----~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g------  198 (673)
                      .+..+|..+|+.+.  ...++.+.++||.+|..    ..+..+|..+|+++.+..-.. ..+.+.+|..|..-.      
T Consensus        91 ~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~  168 (292)
T COG0790          91 RDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA  168 (292)
T ss_pred             ccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence            46899999999554  45788899999999987    559999999999999875444 455888888887642      


Q ss_pred             -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        199 -KLTDALLHYKEAIRIQPSFADAYSNMGNTLKE----MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK  267 (673)
Q Consensus       199 -~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~  267 (673)
                       +...|...|.++-...  ++.+..++|.+|..    ..++.+|..+|++|-+...  ..+.++++ ++...|.
T Consensus       169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~  237 (292)
T COG0790         169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGE  237 (292)
T ss_pred             HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCC
Confidence             2347999999988776  78899999988865    3588999999999998876  88888998 6666663

>KOG1308|consensus

Probab=96.91  E-value=0.00087  Score=68.54  Aligned_cols=90  Identities=23%  Similarity=0.267  Sum_probs=75.3

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691        161 REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC  240 (673)
Q Consensus       161 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~  240 (673)
                      +..|.+++|++.|..++.++|.....|...+.++.++++...|++-|..+++++|+...-|-..|.+...+|++++|...
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence            45677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhCCC
Q psy17691        241 YSRAIQINPG  250 (673)
Q Consensus       241 ~~~Al~l~p~  250 (673)
                      ++.+.+++-+
T Consensus       205 l~~a~kld~d  214 (377)
T KOG1308|consen  205 LALACKLDYD  214 (377)
T ss_pred             HHHHHhcccc
Confidence            8888887643

>PLN02152 indole-3-acetate beta-glucosyltransferase

Probab=96.91  E-value=0.0091  Score=65.95  Aligned_cols=148  Identities=18%  Similarity=0.252  Sum_probs=90.2

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      ...|+|.||+....++.+.++-.+.-|.+.|...||.+..+...+..                                .
T Consensus       260 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~--------------------------------~  307 (455)
T PLN02152        260 ESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAK--------------------------------I  307 (455)
T ss_pred             CCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccc--------------------------------c
Confidence            45899999999999999999999999999999989976511000000                                0


Q ss_pred             ChhhhhhH--HHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--Ccchhh
Q psy17691        553 PAVGEANI--QATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASR  628 (673)
Q Consensus       553 ~~~~~~~~--~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r  628 (673)
                      ++.....+  -+-|.++ + .+|..+.++.|+.+.|+- ..+-.|+   .++|.+|++||+++|||+|+++-  +++.  
T Consensus       308 ~~~~~~~~~~~~~f~e~-~-~~~g~v~~W~PQ~~iL~h-~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~--  379 (455)
T PLN02152        308 EGEEETEIEKIAGFRHE-L-EEVGMIVSWCSQIEVLRH-RAVGCFV---THCGWSSSLESLVLGVPVVAFPMWSDQPA--  379 (455)
T ss_pred             ccccccccccchhHHHh-c-cCCeEEEeeCCHHHHhCC-cccceEE---eeCCcccHHHHHHcCCCEEeccccccchH--
Confidence            00000000  0112221 2 467777799998887763 2233344   48899999999999999999864  3332  


Q ss_pred             hHHHHHHh---cCCCccc----cCCHHHHHHHHHHhcCCH
Q psy17691        629 VAASQLAT---LGCPELI----ARTHKEYQDIAIRLGTDR  661 (673)
Q Consensus       629 ~~~~~l~~---~gl~~~i----a~~~~~yv~~a~~la~d~  661 (673)
                       .+..+..   +|+.-..    .-+.++-.+...++..|+
T Consensus       380 -na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~  418 (455)
T PLN02152        380 -NAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK  418 (455)
T ss_pred             -HHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh
Confidence             2223322   2322111    115667666666666554

>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]

Probab=96.90  E-value=0.01  Score=64.77  Aligned_cols=94  Identities=18%  Similarity=0.313  Sum_probs=73.0

Q ss_pred             CCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcccc---
Q psy17691        568 GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA---  644 (673)
Q Consensus       568 g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---  644 (673)
                      ++ ++.++..+..|+.+.+.   .+|+++.   .+|.+||.|||..|||+|.++.. +-.-.-+.-+..+|....+-   
T Consensus       281 ~~-p~n~~v~~~~p~~~~l~---~ad~vI~---hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~~l~~~~  352 (406)
T COG1819         281 NV-PDNVIVADYVPQLELLP---RADAVIH---HGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGIALPFEE  352 (406)
T ss_pred             cC-CCceEEecCCCHHHHhh---hcCEEEe---cCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCceecCccc
Confidence            44 57889999998877655   7888874   79999999999999999999886 33334667778888886554   


Q ss_pred             CCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691        645 RTHKEYQDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       645 ~~~~~yv~~a~~la~d~~~~~~~~~  669 (673)
                      .+++.-.+...+..+|...++..+.
T Consensus       353 l~~~~l~~av~~vL~~~~~~~~~~~  377 (406)
T COG1819         353 LTEERLRAAVNEVLADDSYRRAAER  377 (406)
T ss_pred             CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence            4677777777778888888777654

>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional

Probab=96.89  E-value=0.005  Score=65.50  Aligned_cols=93  Identities=14%  Similarity=0.093  Sum_probs=65.3

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCC------------CCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcC
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTP------------LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLG  638 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~------------p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~g  638 (673)
                      .++|+|.|..+.++....|.. |+.|=+.            .++-+.-+.++|++|+|||+.......     .++..-+
T Consensus       206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~-----~~V~~~~  279 (333)
T PRK09814        206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIA-----DFIVENG  279 (333)
T ss_pred             CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHH-----HHHHhCC
Confidence            478999999999998888776 6543211            467777899999999999996653332     3444433


Q ss_pred             CCccccCCHHHHHHHHHHhcCCHHHHHHHHhhhc
Q psy17691        639 CPELIARTHKEYQDIAIRLGTDRDYCEKALLYHE  672 (673)
Q Consensus       639 l~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~~  672 (673)
                       ..+++++.++..++..++  +.+.+.+|+...+
T Consensus       280 -~G~~v~~~~el~~~l~~~--~~~~~~~m~~n~~  310 (333)
T PRK09814        280 -LGFVVDSLEELPEIIDNI--TEEEYQEMVENVK  310 (333)
T ss_pred             -ceEEeCCHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence             345566888888777775  4566777776543

>KOG1387|consensus

Probab=96.88  E-value=0.011  Score=60.54  Aligned_cols=157  Identities=17%  Similarity=0.124  Sum_probs=114.4

Q ss_pred             CcEEEecCC--cccccChhhHHHHHHHHhcccC------eeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCch
Q psy17691        474 DAIVYCNFN--QLYKIDPSTLQMWVNVLKAVPN------SILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNS  545 (673)
Q Consensus       474 ~~~~~~~~~--~~~K~~~~~~~~~~~il~~~p~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (673)
                      +.++..+++  |+.|.++ ++++++--+...|.      .+|.++|.            +|+-                 
T Consensus       268 r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGS------------cRne-----------------  317 (465)
T KOG1387|consen  268 RENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGS------------CRNE-----------------  317 (465)
T ss_pred             cceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEec------------cCCh-----------------
Confidence            345555555  8889999 88988887776665      68888872            1111                 


Q ss_pred             hhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCC-ceeecCCC
Q psy17691        546 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGT-PVVTLPGE  623 (673)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~Gv-Pvvt~~g~  623 (673)
                            -+..-..+|+++.+.+.|+ +.|.|.--+|.++....++-|-|.+.+- .+.=|.+..|+|++|+ |||--.|.
T Consensus       318 ------eD~ervk~Lkd~a~~L~i~-~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgG  390 (465)
T KOG1387|consen  318 ------EDEERVKSLKDLAEELKIP-KHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGG  390 (465)
T ss_pred             ------hhHHHHHHHHHHHHhcCCc-cceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCC
Confidence                  0112245778889999995 6799999999999999999999999985 6677999999999997 55555554


Q ss_pred             cchhhhHHHHHHhcCC-CccccCCHHHHHHHHHHhc-CCHHHHHHHHhhh
Q psy17691        624 TLASRVAASQLATLGC-PELIARTHKEYQDIAIRLG-TDRDYCEKALLYH  671 (673)
Q Consensus       624 ~~~~r~~~~~l~~~gl-~~~ia~~~~~yv~~a~~la-~d~~~~~~~~~~~  671 (673)
                      ....=+    ..-.|- .++.|.|.+||++...... .|.+.|..+|.+.
T Consensus       391 P~lDIV----~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~A  436 (465)
T KOG1387|consen  391 PLLDIV----TPWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNA  436 (465)
T ss_pred             Cceeee----eccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            333211    112343 4688899999999988876 4777788888765

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.88  E-value=0.042  Score=58.36  Aligned_cols=90  Identities=14%  Similarity=0.085  Sum_probs=42.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHc
Q psy17691        126 VLLLIQVSEAEECYNTALRL----CPTHADSLNNLANIKRE---QGYIEEATRLYLKA-LEVFPEFAAAHSNLASVLQQQ  197 (673)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~Lg~~~~~---~g~~~eA~~~~~~a-l~~~p~~~~~~~~la~~~~~~  197 (673)
                      +....+|+.-+++.+..-.+    -++...+.+.+|.++.+   .|+.++|+..+..+ ....+.+++++..+|.+|...
T Consensus       151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~  230 (374)
T PF13281_consen  151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL  230 (374)
T ss_pred             hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence            33344555555544444433    23334444555555555   55555555555552 223334455555555554321


Q ss_pred             ---------CCHHHHHHHHHHHHHhCC
Q psy17691        198 ---------GKLTDALLHYKEAIRIQP  215 (673)
Q Consensus       198 ---------g~~~eA~~~~~~al~~~p  215 (673)
                               ...++|+..|.++.+.+|
T Consensus       231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~  257 (374)
T PF13281_consen  231 FLESNFTDRESLDKAIEWYRKGFEIEP  257 (374)
T ss_pred             HHHcCccchHHHHHHHHHHHHHHcCCc
Confidence                     124455555555555553

>KOG0551|consensus

Probab=96.86  E-value=0.015  Score=59.39  Aligned_cols=96  Identities=19%  Similarity=0.098  Sum_probs=86.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTH----ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ  196 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  196 (673)
                      ..++-+++.++|..|+.+|.+.|+..-.+    +..|.|.|-+....|+|..|+....+++.++|.+..+++.-|.+++.
T Consensus        86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e  165 (390)
T KOG0551|consen   86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE  165 (390)
T ss_pred             HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence            34566788899999999999999986544    45788999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCC
Q psy17691        197 QGKLTDALLHYKEAIRIQPS  216 (673)
Q Consensus       197 ~g~~~eA~~~~~~al~~~p~  216 (673)
                      +.++.+|...++..++++.+
T Consensus       166 Le~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  166 LERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHHHHHHhhhhhhhHH
Confidence            99999999999998877654

>KOG2796|consensus

Probab=96.86  E-value=0.023  Score=56.30  Aligned_cols=119  Identities=14%  Similarity=0.106  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHH
Q psy17691        151 DSLNNLANIKREQGYIEEATRLYLKALEVF-PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ------PSFADAYSN  223 (673)
Q Consensus       151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~  223 (673)
                      .+.+.+..++.-.|+|.-....+.+.++.+ |..+.....||.+..+.|+.+.|..++++.-+.+      .....++.+
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            467788889999999999999999999998 6678889999999999999999999999654432      233557788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       224 lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      .+.++.-.+++.+|...|.++++.||.++.+..+-+.|+.-+|+..
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~  303 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK  303 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998875

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.83  E-value=0.0021  Score=43.11  Aligned_cols=32  Identities=31%  Similarity=0.738  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPG  250 (673)
Q Consensus       219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~  250 (673)
                      .+|+.+|.+|.++|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35566666666666666666666666666653

...

>PLN03007 UDP-glucosyltransferase family protein

Probab=96.83  E-value=0.0099  Score=66.51  Aligned_cols=109  Identities=14%  Similarity=0.203  Sum_probs=71.1

Q ss_pred             CCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       472 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      +...++|.||+....+++..+.-.+.-|...+...+|.++.+...                                   
T Consensus       283 ~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~-----------------------------------  327 (482)
T PLN03007        283 KPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQ-----------------------------------  327 (482)
T ss_pred             CCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcc-----------------------------------
Confidence            345799999999888877777777777888888788876621000                                   


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                        +.....+-.-|.++- ....+++.++.|+.+.|.. ..+..|+   .++|-+|++||+++|||+|+++-
T Consensus       328 --~~~~~~lp~~~~~r~-~~~g~~v~~w~PQ~~iL~h-~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P~  391 (482)
T PLN03007        328 --GEKEEWLPEGFEERT-KGKGLIIRGWAPQVLILDH-QATGGFV---THCGWNSLLEGVAAGLPMVTWPV  391 (482)
T ss_pred             --cchhhcCCHHHHHHh-ccCCEEEecCCCHHHHhcc-Cccceee---ecCcchHHHHHHHcCCCeeeccc
Confidence              000000111112211 1356888999998887763 2233354   48899999999999999999863

>KOG1308|consensus

Probab=96.75  E-value=0.00056  Score=69.87  Aligned_cols=93  Identities=18%  Similarity=0.064  Sum_probs=84.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA  203 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  203 (673)
                      ...+..|.+++|++.|..+++++|..+..+...+.++.++++...|+..+..+++++|+...-|-..|.....+|++++|
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence            34556789999999999999999999999999999999999999999999999999999999888899999999999999


Q ss_pred             HHHHHHHHHhCCC
Q psy17691        204 LLHYKEAIRIQPS  216 (673)
Q Consensus       204 ~~~~~~al~~~p~  216 (673)
                      ...+..+++++-+
T Consensus       202 a~dl~~a~kld~d  214 (377)
T KOG1308|consen  202 AHDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999887644

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.66  E-value=0.18  Score=53.29  Aligned_cols=117  Identities=12%  Similarity=0.088  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q psy17691        132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ---QGKLTDALLHYK  208 (673)
Q Consensus       132 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~eA~~~~~  208 (673)
                      .+.-+.+|++|++.+|++...+..+-....+..+-++..+-+++++..+|++...|..+-.....   .-.+++....|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            56778889999999999999988888888888899999999999999999999888766554443   335778888888


Q ss_pred             HHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691        209 EAIRIQPS------------------FADAYSNMGNTLKEMQDIQGALQCYSRAIQIN  248 (673)
Q Consensus       209 ~al~~~p~------------------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~  248 (673)
                      ++++.-..                  ...+...+...+.+.|..+.|+..++-.++++
T Consensus       127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            87765110                  12356778888899999999999999999875

>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]

Probab=96.66  E-value=0.02  Score=61.14  Aligned_cols=106  Identities=16%  Similarity=0.210  Sum_probs=85.3

Q ss_pred             hhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcc---hhhhHHHH
Q psy17691        557 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL---ASRVAASQ  633 (673)
Q Consensus       557 ~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~  633 (673)
                      .+.++....+.|+    +.+.+..  +++..+|..+|+++.   -.|++|..|.++.|+|+|..+-+.-   .....|-.
T Consensus       224 ~~~~~~~~~~~~~----~~v~~f~--~dm~~~~~~ADLvIs---RaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~  294 (357)
T COG0707         224 LEELKSAYNELGV----VRVLPFI--DDMAALLAAADLVIS---RAGALTIAELLALGVPAILVPYPPGADGHQEYNAKF  294 (357)
T ss_pred             HHHHHHHHhhcCc----EEEeeHH--hhHHHHHHhccEEEe---CCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHH
Confidence            4566666677776    5555543  467888899999986   6899999999999999999877765   66778889


Q ss_pred             HHhcCCCccccC---CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        634 LATLGCPELIAR---THKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       634 l~~~gl~~~ia~---~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      |...|..-++.+   |.+..++...++.++++.+++|++..
T Consensus       295 l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a  335 (357)
T COG0707         295 LEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENA  335 (357)
T ss_pred             HHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999888765543   57899999999999999999997754

>KOG4507|consensus

Probab=96.62  E-value=0.0047  Score=67.04  Aligned_cols=109  Identities=23%  Similarity=0.277  Sum_probs=95.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        155 NLANIKREQGYIEEATRLYLKALEVFPEFA-AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD  233 (673)
Q Consensus       155 ~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  233 (673)
                      .-|..+.-+|+...|++++..|+...|... ....+|+.++...|-...|-..+.+++.++...+-.++.+|+.+..+.+
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~  691 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN  691 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence            334555678999999999999999998764 4578999999999999999999999999998888999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        234 IQGALQCYSRAIQINPGFADAHSNLASIHK  263 (673)
Q Consensus       234 ~~eA~~~~~~Al~l~p~~~~a~~~La~~~~  263 (673)
                      .++|++.|++|++++|+++.....|-.+-.
T Consensus       692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  692 ISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             hHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            999999999999999999988877766544

>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase

Probab=96.59  E-value=0.021  Score=63.31  Aligned_cols=116  Identities=16%  Similarity=0.103  Sum_probs=81.6

Q ss_pred             ccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccC----eeEEeeccCCcCCCCCCCCcccccCCCCccchh
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPN----SILWLLKFPAVGEANISRPLFRPRLRPSASTSI  537 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (673)
                      ..|+++|   +..++.++.|+.  |-.+.-++++.++|++.|+    .+|++++.|..++                    
T Consensus       277 ~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~--------------------  333 (487)
T TIGR02398       277 RIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASG--------------------  333 (487)
T ss_pred             HHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCccc--------------------
Confidence            4667777   566777788876  9999999999999999996    6788776321111                    


Q ss_pred             hhhccCchhhhhccCChhhhhhHHHH-------HHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCC-CCcchhhh
Q psy17691        538 VLKAVPNSILWLLKFPAVGEANIQAT-------AQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMD  609 (673)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~-~g~~t~~e  609 (673)
                          ++.        -..-+..+.+.       +...|.. ..+.|.+.++.++..++|+.+||+|.|.-. +=+.++.|
T Consensus       334 ----v~~--------y~~l~~~v~~~v~~IN~~fg~~~~~-pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~E  400 (487)
T TIGR02398       334 ----MTI--------YDELQGQIEQAVGRINGRFARIGWT-PLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKE  400 (487)
T ss_pred             ----chH--------HHHHHHHHHHHHHHHhhccCCCCCc-cEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhh
Confidence                000        00012222222       2223542 456778899999999999999999998755 45999999


Q ss_pred             hhhcCC
Q psy17691        610 VLWTGT  615 (673)
Q Consensus       610 al~~Gv  615 (673)
                      .++++.
T Consensus       401 yva~~~  406 (487)
T TIGR02398       401 YVAAQG  406 (487)
T ss_pred             HHhhhc
Confidence            999987

Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.

>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1

Probab=96.55  E-value=0.0055  Score=51.73  Aligned_cols=71  Identities=13%  Similarity=0.064  Sum_probs=51.3

Q ss_pred             EecCC-CCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        595 CLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       595 ~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      +|.+- ..+-++..+|+|++|+|||+-.-..+..      +-.-|..-+...|.++.+++...|.+|++.++++++..
T Consensus         2 ~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~------~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a   73 (92)
T PF13524_consen    2 NLNPSRSDGPNMRIFEAMACGTPVISDDSPGLRE------IFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNA   73 (92)
T ss_pred             EeeCCCCCCCchHHHHHHHCCCeEEECChHHHHH------HcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            45543 2445789999999999999965421111      11114445666799999999999999999999998764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.55  E-value=0.0042  Score=41.57  Aligned_cols=30  Identities=40%  Similarity=0.499  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17691        152 SLNNLANIKREQGYIEEATRLYLKALEVFP  181 (673)
Q Consensus       152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p  181 (673)
                      +++.+|.+|..+|++++|+++|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344444444444444444444444444444

...

>KOG4507|consensus

Probab=96.52  E-value=0.0072  Score=65.66  Aligned_cols=97  Identities=24%  Similarity=0.340  Sum_probs=57.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHAD-SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHY  207 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~-a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~  207 (673)
                      .|+...|+.|++.|+-..|.... ...+||+++...|-...|-..+.+++.+....+..++.+|+.+..+.+.+.|++.+
T Consensus       620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~  699 (886)
T KOG4507|consen  620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF  699 (886)
T ss_pred             cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence            45666666666666665554332 34556666666665566666666666666555556666666666666666666666


Q ss_pred             HHHHHhCCCCHHHHHHHH
Q psy17691        208 KEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       208 ~~al~~~p~~~~~~~~lg  225 (673)
                      ++|++++|+++++-..|-
T Consensus       700 ~~a~~~~~~~~~~~~~l~  717 (886)
T KOG4507|consen  700 RQALKLTTKCPECENSLK  717 (886)
T ss_pred             HHHHhcCCCChhhHHHHH
Confidence            666666666655554443

>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing

Probab=96.52  E-value=0.034  Score=59.95  Aligned_cols=85  Identities=11%  Similarity=0.094  Sum_probs=59.1

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcc-ccCCHHH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPEL-IARTHKE  649 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~-ia~~~~~  649 (673)
                      .++|.+.+.++..+++.++..||+++    -+++...-||..+|+|||++.+ +.-+|.       .|-.-+ |-.+.++
T Consensus       261 ~~~v~l~~~l~~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~~-R~e~~~-------~g~nvl~vg~~~~~  328 (365)
T TIGR03568       261 HPNFRLFKSLGQERYLSLLKNADAVI----GNSSSGIIEAPSFGVPTINIGT-RQKGRL-------RADSVIDVDPDKEE  328 (365)
T ss_pred             CCCEEEECCCChHHHHHHHHhCCEEE----EcChhHHHhhhhcCCCEEeecC-Cchhhh-------hcCeEEEeCCCHHH
Confidence            36899999999999999999999998    2222334899999999999864 333331       133333 4457788


Q ss_pred             HHHHHHHhcCCHHHHHHHH
Q psy17691        650 YQDIAIRLGTDRDYCEKAL  668 (673)
Q Consensus       650 yv~~a~~la~d~~~~~~~~  668 (673)
                      -++.+.+ +.+++.++.+.
T Consensus       329 I~~a~~~-~~~~~~~~~~~  346 (365)
T TIGR03568       329 IVKAIEK-LLDPAFKKSLK  346 (365)
T ss_pred             HHHHHHH-HhChHHHHHHh
Confidence            8776666 55655544443

This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.51  E-value=0.073  Score=59.27  Aligned_cols=139  Identities=17%  Similarity=0.052  Sum_probs=106.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HH-HHH----HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNL-------AN-IKR----EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ  196 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~L-------g~-~~~----~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  196 (673)
                      .|+-+.++..+.++.+. .+--.....+       .. .+.    ...+.+.|.+.++...+..|+..-..+..|.++..
T Consensus       201 ~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~  279 (468)
T PF10300_consen  201 SGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL  279 (468)
T ss_pred             CCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            58999999999999873 3321111111       11 111    34578899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCC
Q psy17691        197 QGKLTDALLHYKEAIRIQPSF----ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA-DAHSNLASIHKDSGKR  268 (673)
Q Consensus       197 ~g~~~eA~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~-~a~~~La~~~~~~g~~  268 (673)
                      .|+.++|++.|++++......    .-+++.+|.++..++++++|..+|.+..+.+.-.. -..+..|.|+...|+.
T Consensus       280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            999999999999998543332    23678899999999999999999999998655433 3344567778888775

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610|consensus

Probab=96.46  E-value=0.051  Score=55.66  Aligned_cols=117  Identities=19%  Similarity=0.049  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHH
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI-QPSF---ADAYSNMGNTL  228 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~---~~~~~~lg~~~  228 (673)
                      ...-+.++...|++.+|...+++.++-.|.+.-++..--.+++..|+...-...+++.+.. +++-   ..++-.++..+
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            3344566777899999999999999999999988888888999999999999999999987 6665   56677889999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       229 ~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      .+.|-|++|.+.-++++++++.+.-+...++.++...|++.
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~K  226 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHK  226 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhh
Confidence            99999999999999999999999999999999998888876

>KOG3617|consensus

Probab=96.45  E-value=0.06  Score=60.90  Aligned_cols=116  Identities=24%  Similarity=0.227  Sum_probs=80.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhhCCC----------CHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA----------LEVFPE----------FAAAHS  188 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~a----------l~~~p~----------~~~~~~  188 (673)
                      .|.+++|.+..+.-=++  .--..|++.|.-+...++.+.|+++|+++          |.-+|.          +...|.
T Consensus       839 ~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~  916 (1416)
T KOG3617|consen  839 QGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYS  916 (1416)
T ss_pred             cccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHH
Confidence            55555555443321111  11346788888888888888888888876          222332          345677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAIRI---------------------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al~~---------------------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  246 (673)
                      ..|..+...|+.+.|+.+|..|-..                     ...+..+.+.+|..|...|++.+|+..|.+|-.
T Consensus       917 WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  917 WWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             HHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            7788888888888888888876443                     234566888999999999999999998887643

>KOG3824|consensus

Probab=96.36  E-value=0.0086  Score=60.33  Aligned_cols=64  Identities=22%  Similarity=0.338  Sum_probs=35.4

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       162 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  225 (673)
                      +.|+.++|...|+.|++++|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.|.+
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            4455555555555555555555555555555555555555555555555555555555555544

>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5

Probab=96.35  E-value=0.026  Score=60.25  Aligned_cols=141  Identities=16%  Similarity=0.196  Sum_probs=84.0

Q ss_pred             CCCcEEEecCCcccccC-hhh----HHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchh
Q psy17691        472 PEDAIVYCNFNQLYKID-PST----LQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSI  546 (673)
Q Consensus       472 ~~~~~~~~~~~~~~K~~-~~~----~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (673)
                      ..+.+++.++.+..... ++.    .++..++.+. ++..+++.-+                               |  
T Consensus       178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~h-------------------------------n--  223 (346)
T PF02350_consen  178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLH-------------------------------N--  223 (346)
T ss_dssp             TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE---------------------------------S--
T ss_pred             cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEec-------------------------------C--
Confidence            55677888888888777 534    4444444444 5555555431                               1  


Q ss_pred             hhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhh-hhhhcCCceeecC--CC
Q psy17691        547 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSM-DVLWTGTPVVTLP--GE  623 (673)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~-eal~~GvPvvt~~--g~  623 (673)
                            ...+...+.+.+.+.    +++.+.+.+++.+|+.+++.+|+++-    +.| +.. ||.++|+|||++.  |+
T Consensus       224 ------~p~~~~~i~~~l~~~----~~v~~~~~l~~~~~l~ll~~a~~vvg----dSs-GI~eEa~~lg~P~v~iR~~ge  288 (346)
T PF02350_consen  224 ------NPRGSDIIIEKLKKY----DNVRLIEPLGYEEYLSLLKNADLVVG----DSS-GIQEEAPSLGKPVVNIRDSGE  288 (346)
T ss_dssp             -------HHHHHHHHHHHTT-----TTEEEE----HHHHHHHHHHESEEEE----SSH-HHHHHGGGGT--EEECSSS-S
T ss_pred             ------CchHHHHHHHHhccc----CCEEEECCCCHHHHHHHHhcceEEEE----cCc-cHHHHHHHhCCeEEEecCCCC
Confidence                  134555665555554    39999999999999999999999963    345 777 9999999999995  55


Q ss_pred             cchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHH
Q psy17691        624 TLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKAL  668 (673)
Q Consensus       624 ~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~  668 (673)
                      +..+|..       |-.-+|..+.++-.+.+.+...+.+.+..+.
T Consensus       289 Rqe~r~~-------~~nvlv~~~~~~I~~ai~~~l~~~~~~~~~~  326 (346)
T PF02350_consen  289 RQEGRER-------GSNVLVGTDPEAIIQAIEKALSDKDFYRKLK  326 (346)
T ss_dssp             -HHHHHT-------TSEEEETSSHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             CHHHHhh-------cceEEeCCCHHHHHHHHHHHHhChHHHHhhc
Confidence            5555442       3344555567777666666666666666654

1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.

>KOG2471|consensus

Probab=96.29  E-value=0.014  Score=62.39  Aligned_cols=111  Identities=14%  Similarity=0.046  Sum_probs=89.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------C-
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTA-LRLCPT--------HADSLNNLANIKREQGYIEEATRLYLKALEV---------F-  180 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~---------~-  180 (673)
                      +......|..|++.+|.+.+... +...|.        .-..|+++|.++++.|.|.-+..+|.+|++.         . 
T Consensus       244 ~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~  323 (696)
T KOG2471|consen  244 LLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKP  323 (696)
T ss_pred             HHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            34456667799999998876543 222232        1235789999999999999999999999961         1 


Q ss_pred             --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        181 --------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE  230 (673)
Q Consensus       181 --------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  230 (673)
                              -...+..+|.|..|...|+.-.|.++|.++.+..-.++..|..++.|+..
T Consensus       324 ~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  324 AKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             CcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                    12367899999999999999999999999999999999999999999865

>KOG3824|consensus

Probab=96.23  E-value=0.014  Score=58.81  Aligned_cols=71  Identities=30%  Similarity=0.459  Sum_probs=64.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS  260 (673)
Q Consensus       190 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~  260 (673)
                      .+.-..+.|+.++|...|+.|+.+.|.+++++..+|......++.-+|-++|-+|+.++|.+.+++.|.+.
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            34445678999999999999999999999999999999999999999999999999999999999887654

>KOG1550|consensus

Probab=96.22  E-value=0.21  Score=56.91  Aligned_cols=153  Identities=16%  Similarity=0.074  Sum_probs=93.3

Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHH------cCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----CHH
Q psy17691        104 RVEIFCYALSPDDGTTFSYIISVLL------LIQVSEAEECYNTALRL-----CPTHADSLNNLANIKREQG-----YIE  167 (673)
Q Consensus       104 a~~~~~~~l~p~~~~~~~~~~~~~~------~g~~~~A~~~~~~al~~-----~p~~~~a~~~Lg~~~~~~g-----~~~  167 (673)
                      +...+.......+......++.++.      ..+.+.|+.+|+.+.+.     .-.++.+.+.+|.+|.+..     +.+
T Consensus       231 a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~  310 (552)
T KOG1550|consen  231 AFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYE  310 (552)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHH
Confidence            3344444444444444444433332      23777788877777661     1124556777777777642     567


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q psy17691        168 EATRLYLKALEVFPEFAAAHSNLASVLQQQG---KLTDALLHYKEAIRIQPSFADAYSNMGNTLKE----MQDIQGALQC  240 (673)
Q Consensus       168 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~  240 (673)
                      .|..+|.++-+.  +++.+.+.+|.++....   ++..|.++|..|.+.  .+..+.+++|.||..    .-+...|..+
T Consensus       311 ~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~  386 (552)
T KOG1550|consen  311 KALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAY  386 (552)
T ss_pred             HHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence            777777777665  34556677777776554   466777777777654  346677777777754    2466777788


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHH
Q psy17691        241 YSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       241 ~~~Al~l~p~~~~a~~~La~~~  262 (673)
                      |+++-+..  ++.+.+.++.++
T Consensus       387 ~k~aA~~g--~~~A~~~~~~~~  406 (552)
T KOG1550|consen  387 YKKAAEKG--NPSAAYLLGAFY  406 (552)
T ss_pred             HHHHHHcc--ChhhHHHHHHHH
Confidence            88777766  455555555544

>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]

Probab=96.19  E-value=0.13  Score=54.94  Aligned_cols=159  Identities=20%  Similarity=0.146  Sum_probs=102.2

Q ss_pred             ccccccCCCCCcEEEecCCcccccChh-hHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQLYKIDPS-TLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV  542 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~~~K~~~~-~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (673)
                      ..|.+++.+...++++|-   ..-.++ .++++.+++++.||..++++..                              
T Consensus       222 ~~r~~l~~~r~v~iaaST---H~GEeei~l~~~~~l~~~~~~~llIlVPR------------------------------  268 (419)
T COG1519         222 ALRRQLGGHRPVWVAAST---HEGEEEIILDAHQALKKQFPNLLLILVPR------------------------------  268 (419)
T ss_pred             HHHHhcCCCCceEEEecC---CCchHHHHHHHHHHHHhhCCCceEEEecC------------------------------
Confidence            456667766445566653   444444 5899999999999999998761                              


Q ss_pred             CchhhhhccCChhhhhhHHHHHHHcCCCCC------------eEEeccCcChHHHHHhcccccEEe-c-CCCCCCcchhh
Q psy17691        543 PNSILWLLKFPAVGEANIQATAQALGLDQH------------RILFSNVAAKEEHVRRGQLADVCL-D-TPLCNGHTTSM  608 (673)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------rv~~~~~~~~~~~~~~~~~~Di~L-d-~~p~~g~~t~~  608 (673)
                                +..--..+.+.++.+|+.-.            .|.+..  +..|...+|..+||+. - ||--.||.-.+
T Consensus       269 ----------HpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~D--tmGEL~l~y~~adiAFVGGSlv~~GGHN~L  336 (419)
T COG1519         269 ----------HPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGD--TMGELGLLYGIADIAFVGGSLVPIGGHNPL  336 (419)
T ss_pred             ----------ChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEe--cHhHHHHHHhhccEEEECCcccCCCCCChh
Confidence                      11122456666777776422            222222  2468899999999994 3 77448889999


Q ss_pred             hhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhc-CCHHHHHHHHhh
Q psy17691        609 DVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLG-TDRDYCEKALLY  670 (673)
Q Consensus       609 eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la-~d~~~~~~~~~~  670 (673)
                      |++++|+|||+=+--.-.+-....+++ .|-- +++++ ++.+..++.+- .|++.|.++...
T Consensus       337 Epa~~~~pvi~Gp~~~Nf~ei~~~l~~-~ga~-~~v~~-~~~l~~~v~~l~~~~~~r~~~~~~  396 (419)
T COG1519         337 EPAAFGTPVIFGPYTFNFSDIAERLLQ-AGAG-LQVED-ADLLAKAVELLLADEDKREAYGRA  396 (419)
T ss_pred             hHHHcCCCEEeCCccccHHHHHHHHHh-cCCe-EEECC-HHHHHHHHHHhcCCHHHHHHHHHH
Confidence            999999999983222223333333333 3322 44455 66777777655 558888887543

>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=96.16  E-value=0.032  Score=59.83  Aligned_cols=135  Identities=18%  Similarity=0.153  Sum_probs=87.7

Q ss_pred             ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHH
Q psy17691        486 KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQ  565 (673)
Q Consensus       486 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (673)
                      ++.|.++++-.++.++.|+-++++-.                                        .+....+.+++.+.
T Consensus       200 rllP~~l~aa~~l~~~~p~l~fvvp~----------------------------------------a~~~~~~~i~~~~~  239 (373)
T PF02684_consen  200 RLLPIFLEAAKLLKKQRPDLQFVVPV----------------------------------------APEVHEELIEEILA  239 (373)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEec----------------------------------------CCHHHHHHHHHHHH
Confidence            66789999999999999999998643                                        12233344556666


Q ss_pred             HcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcch-hhhHHHHHH--hcCCCcc
Q psy17691        566 ALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLA-SRVAASQLA--TLGCPEL  642 (673)
Q Consensus       566 ~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~-~r~~~~~l~--~~gl~~~  642 (673)
                      ..+.+..-++..+     +-...++.+|++|-    ..||.|+|+..+|+|.|...--+.. -.++-.+++  -+||+.+
T Consensus       240 ~~~~~~~~~~~~~-----~~~~~m~~ad~al~----~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Ni  310 (373)
T PF02684_consen  240 EYPPDVSIVIIEG-----ESYDAMAAADAALA----ASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNI  310 (373)
T ss_pred             hhCCCCeEEEcCC-----chHHHHHhCcchhh----cCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhh
Confidence            6655433222222     33445667998885    4699999999999997766544332 223333322  2466555


Q ss_pred             ccC------------CHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691        643 IAR------------THKEYQDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       643 ia~------------~~~~yv~~a~~la~d~~~~~~~~~  669 (673)
                      ++.            |++.-.+.+..+..|.+.+.....
T Consensus       311 ia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~  349 (373)
T PF02684_consen  311 IAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKE  349 (373)
T ss_pred             hcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence            543            678888888889999987655443

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.11  E-value=0.078  Score=56.37  Aligned_cols=118  Identities=17%  Similarity=0.194  Sum_probs=96.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHH
Q psy17691        149 HADSLNNLANIKREQGYIEEATRLYLKALEV----FPEFAAAHSNLASVLQQ---QGKLTDALLHYKE-AIRIQPSFADA  220 (673)
Q Consensus       149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~eA~~~~~~-al~~~p~~~~~  220 (673)
                      ++++..++=..|....+|+.-++..+..-.+    -++...+.+.+|.++.+   .|+.++|+..+.. .....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3567778888899999999999999887766    45667888899999998   9999999999999 44556788999


Q ss_pred             HHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        221 YSNMGNTLKEM---------QDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK  267 (673)
Q Consensus       221 ~~~lg~~~~~~---------g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~  267 (673)
                      +..+|.+|..+         ...++|+.+|+++.+++|+. ..=.|++.++...|.
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH  274 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence            99999998753         35789999999999999654 444577777776665

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.10  E-value=0.011  Score=40.46  Aligned_cols=26  Identities=23%  Similarity=0.535  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        221 YSNMGNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       221 ~~~lg~~~~~~g~~~eA~~~~~~Al~  246 (673)
                      +.+||.+|.++|++++|+++|++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55666666666666666666666443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.09  E-value=0.66  Score=48.77  Aligned_cols=153  Identities=14%  Similarity=0.054  Sum_probs=106.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCH-----HHHHHHHHHHHHcCC
Q psy17691        128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV---FPEFA-----AAHSNLASVLQQQGK  199 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~---~p~~~-----~~~~~la~~~~~~g~  199 (673)
                      ..|..+.|+.+-+++-...|.-+.++...-......|+++.|++..+...+.   .++..     ..+...+.... .-+
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dad  244 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DAD  244 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCC
Confidence            3788888888888888888888887777777777888888888888766543   22221     11222222222 235


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc----------
Q psy17691        200 LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG----------  269 (673)
Q Consensus       200 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~----------  269 (673)
                      ...|.....+++++.|+...+-..-+..+.+.|+..++-..++.+.+.+|. ++++.  ..++.+.|+..          
T Consensus       245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~--lY~~ar~gdta~dRlkRa~~L  321 (531)
T COG3898         245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIAL--LYVRARSGDTALDRLKRAKKL  321 (531)
T ss_pred             hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHH--HHHHhcCCCcHHHHHHHHHHH
Confidence            677888888888888888888888888888889999998888888888875 44332  23444555543          


Q ss_pred             cccCCCCHHHHHHHH
Q psy17691        270 FFIRTDLNSAYFWLL  284 (673)
Q Consensus       270 l~l~p~~~~a~~~l~  284 (673)
                      -.+.|+|.+..+..+
T Consensus       322 ~slk~nnaes~~~va  336 (531)
T COG3898         322 ESLKPNNAESSLAVA  336 (531)
T ss_pred             HhcCccchHHHHHHH
Confidence            356788877665544

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.08  E-value=0.88  Score=47.16  Aligned_cols=147  Identities=19%  Similarity=0.117  Sum_probs=111.0

Q ss_pred             chhHHHHHHHhcCCCChhHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHH
Q psy17691        101 NKSRVEIFCYALSPDDGTTFSYIISVLLLI-----QVSEAEECYNTALRLCPTH-ADSLNNLANIKREQG-------YIE  167 (673)
Q Consensus       101 ~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g-----~~~~A~~~~~~al~~~p~~-~~a~~~Lg~~~~~~g-------~~~  167 (673)
                      ...++..+....+.........++..+..|     +..+|..+|+++.+..-.. ..+.+.+|..|..-.       +..
T Consensus        93 ~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~  172 (292)
T COG0790          93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDK  172 (292)
T ss_pred             HHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHH
Confidence            345566666666677777776676666543     8999999999999874333 344888888887642       334


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------
Q psy17691        168 EATRLYLKALEVFPEFAAAHSNLASVLQQ----QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ-----------  232 (673)
Q Consensus       168 eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------  232 (673)
                      .|...|.++-...  +..+..++|.+|..    ..++++|...|+++-+...  ...+++++ ++...|           
T Consensus       173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~  247 (292)
T COG0790         173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTA  247 (292)
T ss_pred             hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccc
Confidence            7999999988776  78899999988865    3489999999999999877  88899999 666666           


Q ss_pred             ----CHHHHHHHHHHHHHhCCCCH
Q psy17691        233 ----DIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       233 ----~~~eA~~~~~~Al~l~p~~~  252 (673)
                          +...|..++.++-...+...
T Consensus       248 ~~~~~~~~a~~~~~~~~~~~~~~~  271 (292)
T COG0790         248 AKEEDKKQALEWLQKACELGFDNA  271 (292)
T ss_pred             ccCCCHHHHHHHHHHHHHcCChhH
Confidence                77788888888776655443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.05  E-value=1.5  Score=46.27  Aligned_cols=129  Identities=16%  Similarity=0.122  Sum_probs=103.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691        130 IQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE  209 (673)
Q Consensus       130 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  209 (673)
                      .+...|...-.+++++.|+...+-..-+..+++.|+..++-..++.+.+..|.- .    ++.+|....--+.++.-+++
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlkR  317 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D----IALLYVRARSGDTALDRLKR  317 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHHH
Confidence            478899999999999999999999999999999999999999999999998853 2    34444444333444444444


Q ss_pred             ---HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        210 ---AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       210 ---al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                         .-.+.|++.+....++..-..-|++..|..--+.+....|. ..++.-|+.+-..
T Consensus       318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeA  374 (531)
T COG3898         318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEA  374 (531)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhh
Confidence               44568999999999999999999999999999999999987 4455566666543

>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed

Probab=95.79  E-value=0.12  Score=55.44  Aligned_cols=82  Identities=15%  Similarity=0.177  Sum_probs=62.0

Q ss_pred             HHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc----chhhhHHHHHHhcCCCccccC---CHHHHHHHHHH
Q psy17691        584 EHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET----LASRVAASQLATLGCPELIAR---THKEYQDIAIR  656 (673)
Q Consensus       584 ~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~----~~~r~~~~~l~~~gl~~~ia~---~~~~yv~~a~~  656 (673)
                      +.-..|..+|+++.   -+|++|+.|++++|+|.|..+-..    .....-+..+...|....+-.   +.+...+...+
T Consensus       245 ~m~~~~~~adlvIs---r~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~  321 (352)
T PRK12446        245 ELPDILAITDFVIS---RAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEE  321 (352)
T ss_pred             hHHHHHHhCCEEEE---CCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHH
Confidence            45567889999985   579999999999999999986432    245566778888887654433   56788888888


Q ss_pred             hcCCHHHHHHHH
Q psy17691        657 LGTDRDYCEKAL  668 (673)
Q Consensus       657 la~d~~~~~~~~  668 (673)
                      +.+|++.+++..
T Consensus       322 ll~~~~~~~~~~  333 (352)
T PRK12446        322 LSHNNEKYKTAL  333 (352)
T ss_pred             HHcCHHHHHHHH
Confidence            888987765543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.78  E-value=0.017  Score=38.05  Aligned_cols=31  Identities=19%  Similarity=0.361  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPG  250 (673)
Q Consensus       220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~  250 (673)
                      +++++|.++.++|++++|++.|++.++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3445555555555555555555555554443

>KOG2396|consensus

Probab=95.78  E-value=0.12  Score=55.67  Aligned_cols=92  Identities=10%  Similarity=0.077  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q psy17691        133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK-LTDALLHYKEAI  211 (673)
Q Consensus       133 ~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al  211 (673)
                      ..-...|+.|+...+.+...|........+.+.+.+-...|.+++..+|++++.|..-|.-.+..+. .+.|...+.++|
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            3455677888888887888888777777777778888888888888888888888877777766665 777788888888


Q ss_pred             HhCCCCHHHHHHH
Q psy17691        212 RIQPSFADAYSNM  224 (673)
Q Consensus       212 ~~~p~~~~~~~~l  224 (673)
                      +.+|+++..|...
T Consensus       168 R~npdsp~Lw~ey  180 (568)
T KOG2396|consen  168 RFNPDSPKLWKEY  180 (568)
T ss_pred             hcCCCChHHHHHH
Confidence            8888887776543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.76  E-value=0.018  Score=38.01  Aligned_cols=30  Identities=20%  Similarity=0.306  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        187 HSNLASVLQQQGKLTDALLHYKEAIRIQPS  216 (673)
Q Consensus       187 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~  216 (673)
                      ++++|.++...|++++|++.|++.++..|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            444444444444444444444444444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.73  E-value=0.019  Score=39.18  Aligned_cols=25  Identities=32%  Similarity=0.543  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        187 HSNLASVLQQQGKLTDALLHYKEAI  211 (673)
Q Consensus       187 ~~~la~~~~~~g~~~eA~~~~~~al  211 (673)
                      +.+||.+|..+|++++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>PRK10941 hypothetical protein; Provisional

Probab=95.72  E-value=0.11  Score=53.13  Aligned_cols=72  Identities=14%  Similarity=0.072  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      ...|+-.+|.+.++++.|+++.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+..-
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            455566666777777777777777777777777777777777777777777777777777777776665443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.67  E-value=0.32  Score=42.51  Aligned_cols=62  Identities=19%  Similarity=0.276  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIR-------IQPSFAD----AYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~-------~~p~~~~----~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      ++..|+..+..+|+|++++....++|.       ++.+...    +-++.|..+..+|+.++|+..|+.+-++
T Consensus        57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            444555555555555555555444443       3334333    4467788888888888888888887654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2396|consensus

Probab=95.66  E-value=0.13  Score=55.53  Aligned_cols=88  Identities=14%  Similarity=0.153  Sum_probs=55.5

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q psy17691        170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD-IQGALQCYSRAIQIN  248 (673)
Q Consensus       170 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~Al~l~  248 (673)
                      ...|+.|+...+.+...|.+......+.+.+.+-...|.+++..+|++++.|..-|.-.+..+. .+.|...|.++|+.+
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n  170 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN  170 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence            4455666666666666666666666666666666666666666666666666666665555554 666666666666666


Q ss_pred             CCCHHHHHH
Q psy17691        249 PGFADAHSN  257 (673)
Q Consensus       249 p~~~~a~~~  257 (673)
                      |+++..|..
T Consensus       171 pdsp~Lw~e  179 (568)
T KOG2396|consen  171 PDSPKLWKE  179 (568)
T ss_pred             CCChHHHHH
Confidence            666655543

>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG

Probab=95.62  E-value=0.028  Score=58.13  Aligned_cols=55  Identities=16%  Similarity=0.166  Sum_probs=41.0

Q ss_pred             hhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecC
Q psy17691        557 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP  621 (673)
Q Consensus       557 ~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~  621 (673)
                      .+.+++..+..    .++.+.+..  .+....+..+|+++.+    ||+|+.|++++|+|+|+++
T Consensus       213 ~~~l~~~~~~~----~~i~~~~~~--~~m~~lm~~aDl~Is~----~G~T~~E~~a~g~P~i~i~  267 (279)
T TIGR03590       213 LDELKKFAKEY----PNIILFIDV--ENMAELMNEADLAIGA----AGSTSWERCCLGLPSLAIC  267 (279)
T ss_pred             HHHHHHHHHhC----CCEEEEeCH--HHHHHHHHHCCEEEEC----CchHHHHHHHcCCCEEEEE
Confidence            34566655442    367777654  4666777899999984    6799999999999999864

This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.62  E-value=0.42  Score=50.83  Aligned_cols=104  Identities=23%  Similarity=0.198  Sum_probs=57.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC------------------
Q psy17691        126 VLLLIQVSEAEECYNTALRLCP----THADSLNNLANIKREQGYIEEATRLYLKALEV-FPE------------------  182 (673)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-~p~------------------  182 (673)
                      ..+.|+++.|...+.++...++    ..+.+.+..+.++...|+..+|+..++..+.. ...                  
T Consensus       156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (352)
T PF02259_consen  156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL  235 (352)
T ss_pred             HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence            3346666666666666665432    13455666666666666666666666666551 000                  


Q ss_pred             ---------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        183 ---------------FAAAHSNLASVLQQQ------GKLTDALLHYKEAIRIQPSFADAYSNMGNTLK  229 (673)
Q Consensus       183 ---------------~~~~~~~la~~~~~~------g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~  229 (673)
                                     ...++..+|......      +..++++..|+++++.+|+...+|..+|..+.
T Consensus       236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~  303 (352)
T PF02259_consen  236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND  303 (352)
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence                           023344444444444      55556666666666666666666665555544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.24  Score=50.34  Aligned_cols=61  Identities=21%  Similarity=0.187  Sum_probs=43.4

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCC
Q psy17691        139 YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF--AAAHSNLASVLQQQGK  199 (673)
Q Consensus       139 ~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~  199 (673)
                      +++.+..+|++.++.+.+|..+...|+.++|.+.+-..++.+-+.  ..+...+-.++...|.
T Consensus       225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP  287 (304)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence            566677788888888888888888888888888888887775443  3444444444444443

>KOG1550|consensus

Probab=95.61  E-value=3.4  Score=47.22  Aligned_cols=183  Identities=18%  Similarity=0.099  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--C---CcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhh
Q psy17691          3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ--P---NFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRI   77 (673)
Q Consensus         3 ~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~--~---~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l   77 (673)
                      .+|...|+.+-+.  .+..+...+|.+|..-+.  .   +.+.-++.++..  .   +       ...+....+.....+
T Consensus       229 ~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~--~---~-------~~~a~~~~~~a~~~l  294 (552)
T KOG1550|consen  229 SEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE--S---F-------KKAATKGLPPAQYGL  294 (552)
T ss_pred             hHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--H---H-------HHHHhhcCCccccHH
Confidence            4567777766544  578888999999887633  2   223333333322  1   0       011111122223344


Q ss_pred             hhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCCHHHH
Q psy17691         78 GYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQ----VSEAEECYNTALRLCPTHADSL  153 (673)
Q Consensus        78 ~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~----~~~A~~~~~~al~~~p~~~~a~  153 (673)
                      +.+|..-....         ......++..+..+..-.++.+...++.++..|.    ..+|.++|..|.+.  .+..+.
T Consensus       295 g~~Y~~g~~~~---------~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~  363 (552)
T KOG1550|consen  295 GRLYLQGLGVE---------KIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAI  363 (552)
T ss_pred             HHHHhcCCCCc---------cccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHH
Confidence            44444322100         0034556666666777777777777776666443    67888888888765  677888


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q psy17691        154 NNLANIKRE----QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ-GKLTDALLHYKEAIR  212 (673)
Q Consensus       154 ~~Lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~  212 (673)
                      +.+|.+|..    ..+...|..+|+++-+..  ++.+...++..+... ++++.+.-.+...-+
T Consensus       364 ~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~  425 (552)
T KOG1550|consen  364 YRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE  425 (552)
T ss_pred             HHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence            888888774    357888999999988887  444444444444332 555555554444333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.58  E-value=0.2  Score=46.62  Aligned_cols=83  Identities=20%  Similarity=0.155  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ  232 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g  232 (673)
                      +..+..+-...++.+++...+...-.+.|+.++.-..-|.++...|++.+|+..++...+..|..+.+--.++.|+..+|
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            34444444555566666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CHH
Q psy17691        233 DIQ  235 (673)
Q Consensus       233 ~~~  235 (673)
                      +.+
T Consensus        93 D~~   95 (160)
T PF09613_consen   93 DPS   95 (160)
T ss_pred             ChH
Confidence            543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.58  E-value=0.13  Score=43.36  Aligned_cols=72  Identities=22%  Similarity=0.234  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691        136 EECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF--AAAHSNLASVLQQQGKLTDALLHY  207 (673)
Q Consensus       136 ~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~  207 (673)
                      +..+++.++.+|++.++.+.+|..+...|++++|++.+-..++.++++  ..+...+-.++...|.-+.-...|
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~   81 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY   81 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence            455677777777777777777777777777777777777777777655  444444444554444433333333

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.52  E-value=0.5  Score=50.70  Aligned_cols=56  Identities=18%  Similarity=-0.038  Sum_probs=33.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        122 YIISVLLLIQVSEAEECYNTALRLCPT-HAD-SLNNLANIKREQGYIEEATRLYLKAL  177 (673)
Q Consensus       122 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~-a~~~Lg~~~~~~g~~~eA~~~~~~al  177 (673)
                      ++..+.+.|-+..|.++.+-.+.++|. ++- +.+.+=....+.++++--++.++...
T Consensus       109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~  166 (360)
T PF04910_consen  109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL  166 (360)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence            334445577788888888888888777 443 33333344455566665555555433

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.47  E-value=0.39  Score=51.11  Aligned_cols=120  Identities=18%  Similarity=0.304  Sum_probs=100.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-C---
Q psy17691        146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE----FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ-P-S---  216 (673)
Q Consensus       146 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p-~---  216 (673)
                      .......|...+.+..+.|+++.|...+.++...++.    .+.+.+..+.++...|+..+|+..++..++.. . .   
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            4456778999999999999999999999999987632    46788889999999999999999999888821 0 0   


Q ss_pred             -----------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        217 -----------------------------FADAYSNMGNTLKEM------QDIQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       217 -----------------------------~~~~~~~lg~~~~~~------g~~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                                                   .+.++..+|......      ++.+++...|+++++++|+...+|+.+|..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                         134677777777777      889999999999999999999999999998


Q ss_pred             HHHc
Q psy17691        262 HKDS  265 (673)
Q Consensus       262 ~~~~  265 (673)
                      +...
T Consensus       302 ~~~~  305 (352)
T PF02259_consen  302 NDKL  305 (352)
T ss_pred             HHHH
Confidence            7665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.46  E-value=0.16  Score=48.48  Aligned_cols=94  Identities=18%  Similarity=0.093  Sum_probs=73.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy17691        123 IISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK  199 (673)
Q Consensus       123 ~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  199 (673)
                      +......|++++|+..++.++....+.   .-+-..||.+..++|++++|...+...-.. .-.+......|.++..+|+
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~  174 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGD  174 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCc
Confidence            344567899999999999999754332   346778999999999999999988764321 1123345668999999999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q psy17691        200 LTDALLHYKEAIRIQPSF  217 (673)
Q Consensus       200 ~~eA~~~~~~al~~~p~~  217 (673)
                      -++|...|+++++..+..
T Consensus       175 k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         175 KQEARAAYEKALESDASP  192 (207)
T ss_pred             hHHHHHHHHHHHHccCCh
Confidence            999999999999997543

>TIGR00661 MJ1255 conserved hypothetical protein

Probab=95.39  E-value=0.033  Score=58.93  Aligned_cols=81  Identities=14%  Similarity=0.272  Sum_probs=60.1

Q ss_pred             CeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc-chhhhHHHHHHhcCCCccccCCHHHH
Q psy17691        572 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET-LASRVAASQLATLGCPELIARTHKEY  650 (673)
Q Consensus       572 ~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~-~~~r~~~~~l~~~gl~~~ia~~~~~y  650 (673)
                      +++.+.+..+ +++...+..||+++..   +|.+|++||+++|+|+|..+-.. +-...-+..+...|+...+-.+.-+-
T Consensus       229 ~~v~~~~~~~-~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~~~  304 (321)
T TIGR00661       229 ENVEIRRITT-DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKELRL  304 (321)
T ss_pred             CCEEEEECCh-HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhHHH
Confidence            6788887765 6788888999999874   57789999999999999998753 35667788899999886653333333


Q ss_pred             HHHHHH
Q psy17691        651 QDIAIR  656 (673)
Q Consensus       651 v~~a~~  656 (673)
                      ++....
T Consensus       305 ~~~~~~  310 (321)
T TIGR00661       305 LEAILD  310 (321)
T ss_pred             HHHHHh
Confidence            333333

This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.38  E-value=1.5  Score=41.16  Aligned_cols=149  Identities=13%  Similarity=0.046  Sum_probs=109.5

Q ss_pred             CChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHH
Q psy17691        115 DDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTH--ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----AAAHS  188 (673)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~  188 (673)
                      .....+.....+...+..++|+..|...-+-.-..  .-+.+..|.+..+.|+..+|+..|.++-.-.|.-    -.+..
T Consensus        57 ~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          57 KSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             cchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence            34455555566667889999999998877665443  3467778999999999999999999987665432    23456


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        189 NLASVLQQQGKLTDALLHYKEA-IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~a-l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      .-+.++...|-|++-....+.. -..+|--..+.-.||..-.+.|++.+|..+|.+... +.+.+....+.+++..+
T Consensus       137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld  212 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD  212 (221)
T ss_pred             HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence            6677888999998876655432 123444556778899999999999999999998776 55556666666666544

>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1

Probab=95.38  E-value=0.077  Score=55.78  Aligned_cols=70  Identities=20%  Similarity=0.262  Sum_probs=55.0

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc-chhhhHHHHHHhcCCCcccc
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET-LASRVAASQLATLGCPELIA  644 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~-~~~r~~~~~l~~~gl~~~ia  644 (673)
                      .+.|.+.+.. ..++...+..||+++..   +|.+|++|++++|+|+|+++-+. .-.+.-+..|+.+|+...+.
T Consensus       231 ~~ni~~~~~~-~~~~~~~m~~ad~vIs~---~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~  301 (318)
T PF13528_consen  231 PGNIHVRPFS-TPDFAELMAAADLVISK---GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLS  301 (318)
T ss_pred             CCCEEEeecC-hHHHHHHHHhCCEEEEC---CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcc
Confidence            4667777643 24566667789999875   78899999999999999998764 46777789999999987653

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.37  E-value=0.53  Score=49.73  Aligned_cols=111  Identities=11%  Similarity=0.094  Sum_probs=82.6

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        137 ECYNTALRLCPTHADSLNNLANIKREQGY------------IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL  204 (673)
Q Consensus       137 ~~~~~al~~~p~~~~a~~~Lg~~~~~~g~------------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  204 (673)
                      .-|++.++.+|++.++|..+....-..-.            .+.-+..|++|++.+|++...+..+-.+..+..+-++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            34777888888888888888766444322            455677888889889988888888878888888888888


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Q psy17691        205 LHYKEAIRIQPSFADAYSNMGNTLKE---MQDIQGALQCYSRAIQI  247 (673)
Q Consensus       205 ~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~eA~~~~~~Al~l  247 (673)
                      +.+++++..+|++...|..+-.....   .-.+++....|.++++.
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            88889998888888887765544433   23466777777777654

>PRK10941 hypothetical protein; Provisional

Probab=95.27  E-value=0.2  Score=51.18  Aligned_cols=76  Identities=17%  Similarity=-0.012  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        152 SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT  227 (673)
Q Consensus       152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  227 (673)
                      ...++=.+|.+.++++.|+.+.+..+.++|+++.-+...|.+|.++|.+..|..-++..++..|+++.+-.....+
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            4667778889999999999999999999999999999999999999999999999999999999988776544433

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.24  E-value=0.56  Score=41.05  Aligned_cols=90  Identities=21%  Similarity=0.129  Sum_probs=68.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCH
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPT------------HADSLNNLANIKREQGYIEEATRLYLKALEV-------FPEFA  184 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-------~p~~~  184 (673)
                      ..-+.-|-|++|...++++++....            ++-++..|+..+..+|+|++++..-.++|..       +.+..
T Consensus        17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG   96 (144)
T PF12968_consen   17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG   96 (144)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence            3445678999999999999997532            2447888999999999999998888887764       44443


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        185 ----AAHSNLASVLQQQGKLTDALLHYKEAIRI  213 (673)
Q Consensus       185 ----~~~~~la~~~~~~g~~~eA~~~~~~al~~  213 (673)
                          .+-++.+..+..+|+.++|+..|+.+-+.
T Consensus        97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                34567899999999999999999988664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.20  E-value=0.029  Score=35.76  Aligned_cols=31  Identities=32%  Similarity=0.659  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPG  250 (673)
Q Consensus       220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~  250 (673)
                      ++.++|.++..+|++++|+.+|+++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4556666666666666666666666655553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.18  E-value=0.12  Score=38.72  Aligned_cols=37  Identities=14%  Similarity=0.161  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHS  256 (673)
Q Consensus       220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~  256 (673)
                      .++.+|..+.++|+|++|..+.+.+|+++|++.++..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            3455555555555555555555555555555555443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.16  E-value=0.17  Score=42.61  Aligned_cols=66  Identities=20%  Similarity=0.178  Sum_probs=40.3

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q psy17691        170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF--ADAYSNMGNTLKEMQDIQ  235 (673)
Q Consensus       170 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~  235 (673)
                      +..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++.  ..+...+-.++..+|.-+
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            455677777777777777777777777777777777777777776654  344444444444444433

>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=95.08  E-value=0.26  Score=58.83  Aligned_cols=159  Identities=17%  Similarity=0.144  Sum_probs=96.0

Q ss_pred             ccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCee--EEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSI--LWLLKFPAVGEANISRPLFRPRLRPSASTSIVL  539 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (673)
                      ..|+.++   +..++.++.|+.  |..+.-+.+|.+.|+..|.-+  ++|+..                           
T Consensus       355 ~lr~~~~---g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQI---------------------------  404 (934)
T PLN03064        355 ELKERFA---GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQI---------------------------  404 (934)
T ss_pred             HHHHHhC---CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEE---------------------------
Confidence            3455555   455777778776  889999999999999999853  554420                           


Q ss_pred             hccCchhhhhccCChhhhhhHHHHH--------HHcCCCC-CeEEecc-CcChHHHHHhcccccEEecCC-CCCCcchhh
Q psy17691        540 KAVPNSILWLLKFPAVGEANIQATA--------QALGLDQ-HRILFSN-VAAKEEHVRRGQLADVCLDTP-LCNGHTTSM  608 (673)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~-~rv~~~~-~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~  608 (673)
                       ++|.+      ..++..+.+++.+        .++|-.- .=|.+.. .++.+++.++|..+||+|-|. -.+=+.+..
T Consensus       405 -a~psr------~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~  477 (934)
T PLN03064        405 -AVPTR------TDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSY  477 (934)
T ss_pred             -cCCCC------CCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHH
Confidence             01110      0112223333332        2334321 1255554 478999999999999998876 556699999


Q ss_pred             hhhhc-----CCceeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcC-CHHHHHHHH
Q psy17691        609 DVLWT-----GTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT-DRDYCEKAL  668 (673)
Q Consensus       609 eal~~-----GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~-d~~~~~~~~  668 (673)
                      |++++     |++|+.=    |+|  ++..|   |-..++.  .|.++..+...+..+ +++.+.+..
T Consensus       478 Eyva~~~~~~GvLILSE----faG--aa~~L---~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~  536 (934)
T PLN03064        478 EFVACQDSKKGVLILSE----FAG--AAQSL---GAGAILVNPWNITEVAASIAQALNMPEEEREKRH  536 (934)
T ss_pred             HHHHhhcCCCCCeEEeC----CCc--hHHHh---CCceEEECCCCHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999     6676642    111  11223   3233333  367777666666555 666655543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.91  E-value=0.19  Score=43.49  Aligned_cols=101  Identities=10%  Similarity=0.015  Sum_probs=59.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPTHAD---SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      ..++..|++-+|++..+..+...+++..   .+..-|.++.++            +-..+..+....+.           
T Consensus         4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yL-----------   60 (111)
T PF04781_consen    4 KDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYL-----------   60 (111)
T ss_pred             HHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHH-----------
Confidence            3456677888888888888887776653   344445554332            22222112222222           


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      -.|+++|.++..+.|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus        61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            23556666667777766666677766666666666666666666654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.84  E-value=0.76  Score=42.76  Aligned_cols=85  Identities=21%  Similarity=0.136  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      ..+..+..+-...++.+++...+...--+.|+.++.-..-|.++...|++.+|+..++...+-.|..+.+.--++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            34556666777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCc
Q psy17691        265 SGKRG  269 (673)
Q Consensus       265 ~g~~~  269 (673)
                      +|+.+
T Consensus        91 ~~D~~   95 (160)
T PF09613_consen   91 LGDPS   95 (160)
T ss_pred             cCChH
Confidence            99877

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.82  E-value=0.16  Score=38.06  Aligned_cols=37  Identities=22%  Similarity=0.117  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS  222 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  222 (673)
                      .++.+|..+++.|+|++|..+.+.+++.+|++..+..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            3455555556666666666666666666666555443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.78  E-value=0.23  Score=43.03  Aligned_cols=82  Identities=20%  Similarity=0.200  Sum_probs=49.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        157 ANIKREQGYIEEATRLYLKALEVFPEFAAAH---SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD  233 (673)
Q Consensus       157 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  233 (673)
                      +.-++..|++-+|++..+..+..++++...|   ..-|.++.            +.+-..+..+...-+.+         
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~------------~lA~~ten~d~k~~yLl---------   61 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY------------KLAKKTENPDVKFRYLL---------   61 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH------------HHHHhccCchHHHHHHH---------
Confidence            4556667777777777777777666655332   22233322            22333332233333333         


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        234 IQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       234 ~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                        .|+++|.++..+.|..+..++.||.-
T Consensus        62 --~sve~~s~a~~Lsp~~A~~L~~la~~   87 (111)
T PF04781_consen   62 --GSVECFSRAVELSPDSAHSLFELASQ   87 (111)
T ss_pred             --HhHHHHHHHhccChhHHHHHHHHHHH
Confidence              46788999999999988888888764

>KOG1192|consensus

Probab=94.71  E-value=0.18  Score=56.71  Aligned_cols=103  Identities=15%  Similarity=0.308  Sum_probs=70.6

Q ss_pred             CcEEEecCCccc---ccChhhHHHHHHHHhcccCee-EEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhh
Q psy17691        474 DAIVYCNFNQLY---KIDPSTLQMWVNVLKAVPNSI-LWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWL  549 (673)
Q Consensus       474 ~~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (673)
                      ..++|.||+...   .++.+.....+..+...|+-. +|-...                                     
T Consensus       277 ~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~-------------------------------------  319 (496)
T KOG1192|consen  277 HSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRP-------------------------------------  319 (496)
T ss_pred             CCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecC-------------------------------------
Confidence            378888888777   899999999999999886666 454430                                     


Q ss_pred             ccCChhhhhhHHHHHHHcCC---CCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeec--CCCc
Q psy17691        550 LKFPAVGEANIQATAQALGL---DQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL--PGET  624 (673)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~g~---~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~--~g~~  624 (673)
                         +...  .     -..|+   +.+.|++.++.|+.+.+..+..+..|+   .++|=.||+|+++.|||+|++  -|++
T Consensus       320 ---~~~~--~-----~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ  386 (496)
T KOG1192|consen  320 ---DDSI--Y-----FPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQ  386 (496)
T ss_pred             ---Ccch--h-----hhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccc
Confidence               0000  0     01122   235688889999999873333344443   588989999999999999854  4555


Q ss_pred             ch
Q psy17691        625 LA  626 (673)
Q Consensus       625 ~~  626 (673)
                      +.
T Consensus       387 ~~  388 (496)
T KOG1192|consen  387 PL  388 (496)
T ss_pred             hh
Confidence            53

>smart00028 TPR Tetratricopeptide repeats

Probab=94.64  E-value=0.051  Score=34.50  Aligned_cols=29  Identities=45%  Similarity=0.497  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFP  181 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p  181 (673)
                      +..+|.++...+++++|+.+++++++.+|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            34444444444444444444444444443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.57  E-value=2.2  Score=44.02  Aligned_cols=123  Identities=16%  Similarity=0.051  Sum_probs=91.6

Q ss_pred             HHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC----CC---C-------
Q psy17691        127 LLLIQVSEAEECYNTALRLC----PTH----ADSLNNLANIKREQG-YIEEATRLYLKALEVF----PE---F-------  183 (673)
Q Consensus       127 ~~~g~~~~A~~~~~~al~~~----p~~----~~a~~~Lg~~~~~~g-~~~eA~~~~~~al~~~----p~---~-------  183 (673)
                      .+.|+++.|..++.|+-...    |+.    ...+++.|......+ ++++|..++++++++-    ..   .       
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            45789999999999987764    322    457888888888999 9999999999998882    11   1       


Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        184 AAAHSNLASVLQQQGKLT---DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~~---eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p  249 (673)
                      ..++..++.+|...+.++   +|....+.+-...|+.+..+...-.++.+.++.+++.+.+.+++..-+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            346777888888877754   455555566666788777775555555558899999999999887644

It is also involved in sporulation [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.49  E-value=0.42  Score=47.21  Aligned_cols=32  Identities=19%  Similarity=0.239  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       218 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p  249 (673)
                      ..+.+.+|.+..+.|++++|..+|.+++....
T Consensus       165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            35677788888888888888888888776543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.34  E-value=0.052  Score=52.81  Aligned_cols=62  Identities=18%  Similarity=0.407  Sum_probs=55.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       192 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                      ....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|.+..
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            34566789999999999999999999999999999999999999999999999999997654

>KOG0529|consensus

Probab=94.31  E-value=0.86  Score=48.41  Aligned_cols=133  Identities=19%  Similarity=0.118  Sum_probs=104.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691        131 QVSEAEECYNTALRLCPTHADSLNNLANIKRE------------QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG  198 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~------------~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  198 (673)
                      ..+++++.-.+.++.+|+...+|+..-.++..            +.-+++-+.+...+++.+|+...+|+....++.+.+
T Consensus        44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p  123 (421)
T KOG0529|consen   44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNP  123 (421)
T ss_pred             cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence            45677788888888888887777655444332            224566788889999999999999999999999876


Q ss_pred             C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        199 K--LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD----IQGALQCYSRAIQINPGFADAHSNLASIHK  263 (673)
Q Consensus       199 ~--~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----~~eA~~~~~~Al~l~p~~~~a~~~La~~~~  263 (673)
                      .  +..=++.++++++.+|.+..+|...=.+..+...    ..+=+++..+++.-++.|..+|.+...++.
T Consensus       124 ~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  124 HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence            4  6788999999999999998888776655544332    456678889999999999999998877765

>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]

Probab=94.29  E-value=0.32  Score=51.44  Aligned_cols=157  Identities=16%  Similarity=0.159  Sum_probs=93.4

Q ss_pred             ccccccCCCCCcEEEecCC--cc---cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhh
Q psy17691        464 TSRQQYGLPEDAIVYCNFN--QL---YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIV  538 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~--~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (673)
                      ..|+.+|++.+.-+++.+=  |.   .++-|-+.++..++..+.|+.++++--.                          
T Consensus       177 ~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~--------------------------  230 (381)
T COG0763         177 AAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLV--------------------------  230 (381)
T ss_pred             HHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecC--------------------------
Confidence            4788899998865544322  32   3678888999889888999999987430                          


Q ss_pred             hhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCcee
Q psy17691        539 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVV  618 (673)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvv  618 (673)
                                     ....+.++..+.......-.+++...    +-...+..||++|-    ..||.|+|++..|+|.|
T Consensus       231 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~aD~al~----aSGT~tLE~aL~g~P~V  287 (381)
T COG0763         231 ---------------NAKYRRIIEEALKWEVAGLSLILIDG----EKRKAFAAADAALA----ASGTATLEAALAGTPMV  287 (381)
T ss_pred             ---------------cHHHHHHHHHHhhccccCceEEecCc----hHHHHHHHhhHHHH----hccHHHHHHHHhCCCEE
Confidence                           11223333333322221112333332    33345556999875    45999999999999966


Q ss_pred             ec-CCCcchhhhHHHHHH--hcCCCccccC------------CHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691        619 TL-PGETLASRVAASQLA--TLGCPELIAR------------THKEYQDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       619 t~-~g~~~~~r~~~~~l~--~~gl~~~ia~------------~~~~yv~~a~~la~d~~~~~~~~~  669 (673)
                      .. .-+.+--.++--+++  .++|+.+++.            +.+.-.+....|..|...++++.+
T Consensus       288 v~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~  353 (381)
T COG0763         288 VAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKE  353 (381)
T ss_pred             EEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHH
Confidence            54 333332223332222  2466666655            355566666677788866555544

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.27  E-value=1.6  Score=46.80  Aligned_cols=128  Identities=20%  Similarity=0.109  Sum_probs=90.8

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHH
Q psy17691        141 TALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV--------------F------------PEF---AAAHSNLA  191 (673)
Q Consensus       141 ~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--------------~------------p~~---~~~~~~la  191 (673)
                      ..++.+|-+.+++..++.++..+|+.+.|.+..++||-.              +            +.|   ..+.+...
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            446779999999999999999999999999999998642              1            112   23455666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHH
Q psy17691        192 SVLQQQGKLTDALLHYKEAIRIQPS-FAD-AYSNMGNTLKEMQDIQGALQCYSRAIQINP-----GFADAHSNLASIHKD  264 (673)
Q Consensus       192 ~~~~~~g~~~eA~~~~~~al~~~p~-~~~-~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p-----~~~~a~~~La~~~~~  264 (673)
                      ..+.+.|-+..|.++++-.+.++|. |+- +...+-....+.++++--++.++.......     .-+..-+..+.++..
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~  190 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR  190 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence            7778889999999999999999988 654 344444555677788777777776554211     123455556666666


Q ss_pred             cCCC
Q psy17691        265 SGKR  268 (673)
Q Consensus       265 ~g~~  268 (673)
                      .++.
T Consensus       191 l~~~  194 (360)
T PF04910_consen  191 LEKE  194 (360)
T ss_pred             hcCc
Confidence            6654

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2300|consensus

Probab=94.17  E-value=1.5  Score=47.47  Aligned_cols=118  Identities=19%  Similarity=0.101  Sum_probs=91.6

Q ss_pred             HcCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHH
Q psy17691        128 LLIQVSEAEECYNTALRL---CPT-------HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVL  194 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~---~p~-------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~  194 (673)
                      -.|++.+|++....+.+.   .|.       .+.+++.+|.....-|.+++|...|..|.+.-...   .-+..|+|.+|
T Consensus       335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y  414 (629)
T KOG2300|consen  335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY  414 (629)
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence            479999999888877765   344       35678889999999999999999999999875432   44567899999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691        195 QQQGKLTDALLHYKEAIRIQPSF----------ADAYSNMGNTLKEMQDIQGALQCYSRAIQIN  248 (673)
Q Consensus       195 ~~~g~~~eA~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~  248 (673)
                      .+.|+.+.-.+.++   .+.|.+          ..+++..|...+.++++.||....++.++..
T Consensus       415 L~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  415 LRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            99887554433333   345543          3467788888999999999999999999886

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.10  E-value=0.072  Score=51.86  Aligned_cols=59  Identities=32%  Similarity=0.493  Sum_probs=43.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        159 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF  217 (673)
Q Consensus       159 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~  217 (673)
                      ...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34456777777777777777777777777777777777777777777777777777765

>KOG0985|consensus

Probab=94.09  E-value=1.5  Score=51.27  Aligned_cols=137  Identities=11%  Similarity=0.041  Sum_probs=87.7

Q ss_pred             cCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17691        112 LSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA  191 (673)
Q Consensus       112 l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  191 (673)
                      ..|+.+..-..+..++..+.|+.|.-+|...        .-|..|+..+..+|+|+.|....++|     ++...|-..+
T Consensus      1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVC 1256 (1666)
T ss_pred             cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHH
Confidence            4566666666666677777777776666432        34566777777777777777777665     3345566655


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       192 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      ..+...+++.-|.-+=-..+    -+++-+-.+-..|...|-++|-+..++.++-+...+-..+..||.+|.+-
T Consensus      1257 faCvd~~EFrlAQiCGL~ii----vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNII----VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred             HHHhchhhhhHHHhcCceEE----EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence            55555555544432211100    12344566677788888888888888888888777777777788877653

>KOG1310|consensus

Probab=93.99  E-value=0.15  Score=55.26  Aligned_cols=89  Identities=24%  Similarity=0.272  Sum_probs=67.1

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691        163 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ---GKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ  239 (673)
Q Consensus       163 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~  239 (673)
                      .+....|+..|.++++..|.....+.+.+.++.+.   |+.-.|+.-+..+++++|....+|+.|+.++.+++++.+|++
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~  466 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS  466 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence            44566778888888888888888888887777664   455566777777788888888888888888888888888888


Q ss_pred             HHHHHHHhCCCC
Q psy17691        240 CYSRAIQINPGF  251 (673)
Q Consensus       240 ~~~~Al~l~p~~  251 (673)
                      +...+....|.+
T Consensus       467 ~~~alq~~~Ptd  478 (758)
T KOG1310|consen  467 CHWALQMSFPTD  478 (758)
T ss_pred             hHHHHhhcCchh
Confidence            777666666644

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.97  E-value=2.3  Score=45.75  Aligned_cols=117  Identities=19%  Similarity=0.127  Sum_probs=81.7

Q ss_pred             HHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhh---------CC---CCHHHHH
Q psy17691        124 ISVLLLIQ-VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATR--LYLKALEV---------FP---EFAAAHS  188 (673)
Q Consensus       124 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~--~~~~al~~---------~p---~~~~~~~  188 (673)
                      ..+++.|+ -++|++.++.+++..+.+.++.+..-.  +-...|.+|..  .+-+.+.+         .|   .+.+.-+
T Consensus       387 k~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian  464 (549)
T PF07079_consen  387 KHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN  464 (549)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence            44566665 889999999999999888755433221  11222333321  22222222         12   2344455


Q ss_pred             HHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691        189 NLA--SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR  243 (673)
Q Consensus       189 ~la--~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~  243 (673)
                      .|+  ..++.+|+|.++.-+-.-..++.| ++.++..+|.++...++|++|..++.+
T Consensus       465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            554  456889999999999999999999 799999999999999999999999875

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2300|consensus

Probab=93.92  E-value=1.1  Score=48.40  Aligned_cols=137  Identities=16%  Similarity=0.083  Sum_probs=98.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHH
Q psy17691        128 LLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----------AAAHSNLASVL  194 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----------~~~~~~la~~~  194 (673)
                      ..+.++.|...|..|.++-...   +.+..++|.+|.+.++-+.-.+.++   .+.|.+          ..+++..|...
T Consensus       379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfa  455 (629)
T KOG2300|consen  379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFA  455 (629)
T ss_pred             hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence            4789999999999999975432   3456788999999887554433333   345543          45677788888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHH---HHHHH
Q psy17691        195 QQQGKLTDALLHYKEAIRIQPS------FADAYSNMGNTLKEMQDIQGALQCYSRAIQIN---PGFADAHSN---LASIH  262 (673)
Q Consensus       195 ~~~g~~~eA~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~---p~~~~a~~~---La~~~  262 (673)
                      +.++++.||...+.+.++....      .+-.+..||.+....|+..++....+-++++.   |+.+-..+.   +-.+|
T Consensus       456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~  535 (629)
T KOG2300|consen  456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLY  535 (629)
T ss_pred             HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            9999999999999999998621      12345678889999999999999888888764   343332222   33455


Q ss_pred             HHcCC
Q psy17691        263 KDSGK  267 (673)
Q Consensus       263 ~~~g~  267 (673)
                      ...|+
T Consensus       536 ~a~g~  540 (629)
T KOG2300|consen  536 QALGE  540 (629)
T ss_pred             HHhCc
Confidence            66665

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.88  E-value=0.67  Score=45.82  Aligned_cols=95  Identities=22%  Similarity=0.174  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCC--C----CHHHHHHH
Q psy17691        131 QVSEAEECYNTALRLC----PT---HADSLNNLANIKREQGYIEEATRLYLKA-------LEVFP--E----FAAAHSNL  190 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~----p~---~~~a~~~Lg~~~~~~g~~~eA~~~~~~a-------l~~~p--~----~~~~~~~l  190 (673)
                      .+++|++.|.-|+-..    .+   -+..+..+|++|..+|+.++....+++|       ++...  .    ...+.+.+
T Consensus        92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi  171 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI  171 (214)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence            6788888888777642    22   2567889999999999966555555555       44332  2    25678899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRIQPSFA-DAYSNMG  225 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~lg  225 (673)
                      |.+..+.|++++|++.|.+++.....+. ..+.++|
T Consensus       172 geL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A  207 (214)
T PF09986_consen  172 GELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA  207 (214)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence            9999999999999999999998754433 2444444

>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed

Probab=93.81  E-value=0.61  Score=52.72  Aligned_cols=82  Identities=15%  Similarity=0.047  Sum_probs=55.8

Q ss_pred             HHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchh-hhHHHHHH----hcC----------CCccc----cCC
Q psy17691        586 VRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLAS-RVAASQLA----TLG----------CPELI----ART  646 (673)
Q Consensus       586 ~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~-r~~~~~l~----~~g----------l~~~i----a~~  646 (673)
                      ...++.||++|-+    .||.|+|+..+|+|.|+..--...+ .++--+++    .+|          .||++    ..|
T Consensus       483 ~~~m~aaD~aLaa----SGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~t  558 (608)
T PRK01021        483 YELMRECDCALAK----CGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQ  558 (608)
T ss_pred             HHHHHhcCeeeec----CCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCC
Confidence            3667789999854    5999999999999977654333222 23323333    122          36788    456


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhhc
Q psy17691        647 HKEYQDIAIRLGTDRDYCEKALLYHE  672 (673)
Q Consensus       647 ~~~yv~~a~~la~d~~~~~~~~~~~~  672 (673)
                      ++.-.+. +++..|++.|++++...+
T Consensus       559 pe~La~~-l~lL~d~~~r~~~~~~l~  583 (608)
T PRK01021        559 PEEVAAA-LDILKTSQSKEKQKDACR  583 (608)
T ss_pred             HHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence            7777765 699999998888877543

>KOG1914|consensus

Probab=93.71  E-value=2.1  Score=46.96  Aligned_cols=139  Identities=18%  Similarity=0.197  Sum_probs=103.6

Q ss_pred             HHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy17691        109 CYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS  188 (673)
Q Consensus       109 ~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  188 (673)
                      .++.+|.+-.+|..+...+....+++....|++.+...|..+.+|..........++|+.-++.|.++|..-=+ .+.|.
T Consensus        12 rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~   90 (656)
T KOG1914|consen   12 RIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWK   90 (656)
T ss_pred             HHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHH
Confidence            56789999999999988888889999999999999999999999999999999999999999999999875332 34443


Q ss_pred             -HHHHHHHHcCCHHHHHH----HHHHHHH---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhC
Q psy17691        189 -NLASVLQQQGKLTDALL----HYKEAIR---IQPSFADAYSNMGNTLK---------EMQDIQGALQCYSRAIQIN  248 (673)
Q Consensus       189 -~la~~~~~~g~~~eA~~----~~~~al~---~~p~~~~~~~~lg~~~~---------~~g~~~eA~~~~~~Al~l~  248 (673)
                       .+..+-...++...+..    .|+-+++   .++.....|...+..+.         ++.+.+.-...|++|+..-
T Consensus        91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP  167 (656)
T KOG1914|consen   91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP  167 (656)
T ss_pred             HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence             33444444555444333    3333332   35666777877776653         3446677788999998653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.70  E-value=0.83  Score=41.85  Aligned_cols=79  Identities=10%  Similarity=-0.015  Sum_probs=53.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy17691        157 ANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ  235 (673)
Q Consensus       157 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  235 (673)
                      ...-...++.+++...+...--+.|+..+....-|.++...|++.+|+..++...+..+..+.+--.++.|+.-+|+.+
T Consensus        17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence            3333446667777777766666777777777777777777777777777777766666666666666677777666654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.62  E-value=0.16  Score=35.31  Aligned_cols=29  Identities=24%  Similarity=0.392  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        219 DAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      .++.++|.+|..+|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            56788888888888888888888888775

>KOG3364|consensus

Probab=93.46  E-value=1.1  Score=40.14  Aligned_cols=73  Identities=18%  Similarity=0.103  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        150 ADSLNNLANIKREQG---YIEEATRLYLKALE-VFPEF-AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS  222 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g---~~~eA~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  222 (673)
                      .+..+++++++....   +..+.+.+++..++ -+|.. -+..+.|+..+++.|+|++|+.+.+..++..|++.++..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            445666666665443   44556666776665 33332 456666777777777777777777777777777665543

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.43  E-value=0.51  Score=50.71  Aligned_cols=137  Identities=14%  Similarity=0.080  Sum_probs=109.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      ..+...+..|+.-.|-.-...++...|..+......+.+...+|+|+.|...+..+-..-..-..+...+-.....+|++
T Consensus       294 ~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~  373 (831)
T PRK15180        294 LSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW  373 (831)
T ss_pred             HHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence            33444556789999999999999999999999999999999999999999888766555444444555556667889999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      ++|.....-.+.-.-++++...--+..-.++|-+++|.-++++.+.++|.....|.|
T Consensus       374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~  430 (831)
T PRK15180        374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN  430 (831)
T ss_pred             HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence            999998888887777777777777777788899999999999999998865444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.41  E-value=1.7  Score=41.57  Aligned_cols=99  Identities=16%  Similarity=0.081  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH----H
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQP--SFAD----A  220 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~----~  220 (673)
                      -.++..+|..|.+.|++++|+++|.++.+.....   .+.+.++-.+....+++.....+..++-..-.  .+.+    .
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            4578899999999999999999999988876443   56778888899999999999999988876532  2222    3


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691        221 YSNMGNTLKEMQDIQGALQCYSRAIQIN  248 (673)
Q Consensus       221 ~~~lg~~~~~~g~~~eA~~~~~~Al~l~  248 (673)
                      ...-|..+...++|.+|-+.|-.+..-.
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            3445667778899999999987765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4814|consensus

Probab=93.39  E-value=0.63  Score=51.75  Aligned_cols=95  Identities=13%  Similarity=0.073  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy17691        119 TFSYIISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS  192 (673)
Q Consensus       119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  192 (673)
                      .|..+...++..+|..+++.|+..+...|.+      +....+++.+|..+.+.+.|.+++++|=+.+|.++-....+-.
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            4556666778889999999999998887665      4467788889999999999999999999999999888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh
Q psy17691        193 VLQQQGKLTDALLHYKEAIRI  213 (673)
Q Consensus       193 ~~~~~g~~~eA~~~~~~al~~  213 (673)
                      +....|.-++|+.+..+....
T Consensus       437 ~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHhcchHHHHHHHHHHHhh
Confidence            888889999998888776654

>KOG0890|consensus

Probab=93.36  E-value=3  Score=53.32  Aligned_cols=132  Identities=20%  Similarity=0.194  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        132 VSEAEECYNTALRL---C----PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL  204 (673)
Q Consensus       132 ~~~A~~~~~~al~~---~----p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  204 (673)
                      ..+-+-.+++++-.   +    ..-.+.|.+.|.+....|+++.|..+.-+|.+..  -++++...|..+-.+|+-..|+
T Consensus      1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred             HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence            44555555555432   2    2337789999999999999999999999998877  5788899999999999999999


Q ss_pred             HHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        205 LHYKEAIRIQPSF-----------------ADAYSNMGNTLKEMQDI--QGALQCYSRAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       205 ~~~~~al~~~p~~-----------------~~~~~~lg~~~~~~g~~--~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      ..+++.++.+-.+                 ..+...++......|++  +.-+.+|+++.++.|...+.++.+|..|.+.
T Consensus      1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred             HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence            9999999764222                 11334444445555554  3557899999999999899999999776655

>KOG1310|consensus

Probab=93.13  E-value=0.24  Score=53.74  Aligned_cols=91  Identities=25%  Similarity=0.151  Sum_probs=80.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQ---GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL  204 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  204 (673)
                      ..+....|+..|.++++..|.....+.+.+.++.+.   |+.-.|+.....|++++|....+|+.|+.++..++++.+|+
T Consensus       386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal  465 (758)
T KOG1310|consen  386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL  465 (758)
T ss_pred             hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence            345688999999999999999999999999998875   57777888899999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCH
Q psy17691        205 LHYKEAIRIQPSFA  218 (673)
Q Consensus       205 ~~~~~al~~~p~~~  218 (673)
                      .+...+....|.+.
T Consensus       466 ~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  466 SCHWALQMSFPTDV  479 (758)
T ss_pred             hhHHHHhhcCchhh
Confidence            99988877778543

>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=93.12  E-value=0.14  Score=48.34  Aligned_cols=92  Identities=17%  Similarity=0.203  Sum_probs=58.7

Q ss_pred             CeEEeccCcC-hHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcc---hhhhHHHHHHhcCCCcccc---
Q psy17691        572 HRILFSNVAA-KEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL---ASRVAASQLATLGCPELIA---  644 (673)
Q Consensus       572 ~rv~~~~~~~-~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l~~~gl~~~ia---  644 (673)
                      .+|.+.+..+ ..+++   ..+|+++.   .+|++|+.|++.+|+|.|.++-...   ....-+..+...|..-.+.   
T Consensus        55 ~~v~~~~~~~~m~~~m---~~aDlvIs---~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~  128 (167)
T PF04101_consen   55 PNVKVFGFVDNMAELM---AAADLVIS---HAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESE  128 (167)
T ss_dssp             CCCEEECSSSSHHHHH---HHHSEEEE---CS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC
T ss_pred             CcEEEEechhhHHHHH---HHcCEEEe---CCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCccc
Confidence            5788888776 45544   57999875   5788999999999999988866652   3333445566666654433   


Q ss_pred             CCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691        645 RTHKEYQDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       645 ~~~~~yv~~a~~la~d~~~~~~~~~  669 (673)
                      .+.++..+....+.+++..+..+..
T Consensus       129 ~~~~~L~~~i~~l~~~~~~~~~~~~  153 (167)
T PF04101_consen  129 LNPEELAEAIEELLSDPEKLKEMAK  153 (167)
T ss_dssp             -SCCCHHHHHHCHCCCHH-SHHHCC
T ss_pred             CCHHHHHHHHHHHHcCcHHHHHHHH
Confidence            2356677777778888887666544

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.

>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]

Probab=93.06  E-value=0.56  Score=52.08  Aligned_cols=115  Identities=19%  Similarity=0.048  Sum_probs=80.9

Q ss_pred             ccccccCCCC--CcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691        464 TSRQQYGLPE--DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL  539 (673)
Q Consensus       464 ~~r~~~~l~~--~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (673)
                      .+++++||+.  +.+.|+.++|+.  |--+-.+.+--.++...  .+++++|..   +                      
T Consensus       281 ~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~g---d----------------------  333 (487)
T COG0297         281 ALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTG---D----------------------  333 (487)
T ss_pred             HHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecC---c----------------------
Confidence            4567899994  568999999885  88888888888888776  888888821   1                      


Q ss_pred             hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCcee
Q psy17691        540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVV  618 (673)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvv  618 (673)
                                    ..-++.++.....+   ++++.+.-..+..-....|.-+|++|=|. =+.-|.|-++||..|.+.|
T Consensus       334 --------------~~le~~~~~la~~~---~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpI  396 (487)
T COG0297         334 --------------PELEEALRALASRH---PGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPI  396 (487)
T ss_pred             --------------HHHHHHHHHHHHhc---CceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcce
Confidence                          11134445544444   34665555555566677889999997754 5577999999999997555


Q ss_pred             e-cCC
Q psy17691        619 T-LPG  622 (673)
Q Consensus       619 t-~~g  622 (673)
                      . -.|
T Consensus       397 v~~tG  401 (487)
T COG0297         397 VRETG  401 (487)
T ss_pred             EcccC
Confidence            4 444

>KOG4814|consensus

Probab=92.77  E-value=0.99  Score=50.26  Aligned_cols=95  Identities=18%  Similarity=0.105  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN  226 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~  226 (673)
                      +.+-|.-+++..+|..++++|...+..-|.+      .....+++.+|..+.+.+.|.+++++|-+.+|.++-....+-.
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            3344666778889999999999999887655      5677889999999999999999999999999998888777778


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh
Q psy17691        227 TLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       227 ~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      +....|.-++|+.+..+....
T Consensus       437 ~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHhcchHHHHHHHHHHHhh
Confidence            888888999999888877654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.70  E-value=0.25  Score=34.21  Aligned_cols=28  Identities=57%  Similarity=0.663  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17691        152 SLNNLANIKREQGYIEEATRLYLKALEV  179 (673)
Q Consensus       152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~  179 (673)
                      ++.++|.+|..+|++++|+.++++++++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4445555555555555555555555443

>KOG3364|consensus

Probab=92.67  E-value=2.3  Score=38.24  Aligned_cols=83  Identities=11%  Similarity=0.174  Sum_probs=66.2

Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        183 FAAAHSNLASVLQQQGK---LTDALLHYKEAIR-IQPS-FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       183 ~~~~~~~la~~~~~~g~---~~eA~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      .....++++.++....+   ..+-+..++..++ -+|. .-+..+.|+..+.+.|+|++|+.+....++.+|++.++..-
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            45678899999876654   5678899999997 4443 35688999999999999999999999999999999988765


Q ss_pred             HHHHHHHc
Q psy17691        258 LASIHKDS  265 (673)
Q Consensus       258 La~~~~~~  265 (673)
                      --.+..+.
T Consensus       111 k~~ied~i  118 (149)
T KOG3364|consen  111 KETIEDKI  118 (149)
T ss_pred             HHHHHHHH
Confidence            54444433

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.29  E-value=0.22  Score=50.63  Aligned_cols=84  Identities=12%  Similarity=0.146  Sum_probs=53.7

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        174 LKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN-MGNTLKEMQDIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       174 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~eA~~~~~~Al~l~p~~~  252 (673)
                      .++-...++++..|...+....+.|-|.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.++++++|+++
T Consensus        97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p  176 (435)
T COG5191          97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP  176 (435)
T ss_pred             ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence            34444456666666666666666666666666677777777777666655 33445556667777777777777777666


Q ss_pred             HHHHH
Q psy17691        253 DAHSN  257 (673)
Q Consensus       253 ~a~~~  257 (673)
                      ..|..
T Consensus       177 ~iw~e  181 (435)
T COG5191         177 RIWIE  181 (435)
T ss_pred             hHHHH
Confidence            66544

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.09  E-value=16  Score=42.82  Aligned_cols=98  Identities=19%  Similarity=0.096  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPE--F-------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF---  217 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---  217 (673)
                      +......++....+.++.+|..+..++-..-+.  .       ....-..|.+....|+.++|++..+.++..-|.+   
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~  494 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR  494 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence            334444555556666666666666555443222  1       2333344555566666666666666666665543   


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        218 --ADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       218 --~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                        ..++..+|.+..-.|++++|..+.+++.++
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~  526 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQM  526 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence              235556666666666666666666666655

>KOG2941|consensus

Probab=91.52  E-value=1.2  Score=46.29  Aligned_cols=113  Identities=16%  Similarity=0.091  Sum_probs=89.3

Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEe-ccCcChHHHHHhcccccEE--ecCCCCC--CcchhhhhhhcCCceeecCCCcchh
Q psy17691        553 PAVGEANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVC--LDTPLCN--GHTTSMDVLWTGTPVVTLPGETLAS  627 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~-~~~~~~~~~~~~~~~~Di~--Ld~~p~~--g~~t~~eal~~GvPvvt~~g~~~~~  627 (673)
                      .|+..+...+.+.++..  .+|.+ .++..-++|-..+..||+.  |.|+.-+  =+|-++|-.-+|+||.++.=...-.
T Consensus       301 KGPlkE~Y~~~I~~~~~--~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~E  378 (444)
T KOG2941|consen  301 KGPLKEKYSQEIHEKNL--QHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDE  378 (444)
T ss_pred             CCchhHHHHHHHHHhcc--cceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHH
Confidence            46677788888888876  56655 5889999999999999976  5565332  3789999999999999976644433


Q ss_pred             hhHHHHHHhcCCCccccCCHHHHHHHHHHhcC----CHHHHHHHHhhhcC
Q psy17691        628 RVAASQLATLGCPELIARTHKEYQDIAIRLGT----DRDYCEKALLYHEE  673 (673)
Q Consensus       628 r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~----d~~~~~~~~~~~~~  673 (673)
                            |-.-|-++++..|.++..+.-.-|-+    |.+.+.++++++.|
T Consensus       379 ------LVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e  422 (444)
T KOG2941|consen  379 ------LVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLRE  422 (444)
T ss_pred             ------HHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Confidence                  44458888999999999999988888    99999999987653

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=91.39  E-value=3.1  Score=46.25  Aligned_cols=140  Identities=20%  Similarity=0.134  Sum_probs=114.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691        130 IQVSEAEECYNTALRLCPTHADSLNN--LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHY  207 (673)
Q Consensus       130 g~~~~A~~~~~~al~~~p~~~~a~~~--Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~  207 (673)
                      +...-++..+...+.+++.+++.+..  +...+...++...+.-....++..+|.+..+..+|+..+...|....+...+
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            34444777777778888888876443  4777888899999999999999999999999999999998888777666655


Q ss_pred             HH-HHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        208 KE-AIRIQPSFADAYSNM------GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       208 ~~-al~~~p~~~~~~~~l------g~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      .+ +....|++......+      |..+..+|+..++....+++.++.|.++.....+.....+..++.
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~  193 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP  193 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch
Confidence            55 889999988766555      999999999999999999999999999888777776655555543

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.32  E-value=0.32  Score=49.52  Aligned_cols=87  Identities=8%  Similarity=0.041  Sum_probs=73.2

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        138 CYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN-LASVLQQQGKLTDALLHYKEAIRIQPS  216 (673)
Q Consensus       138 ~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~p~  216 (673)
                      .|.++....++++..|...+..-...+-+.+-...|.++++.+|.+.+.|.. -+.-+...++++.+...+.++++.+|+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            4555566678889999998888888889999999999999999999998877 555677789999999999999999999


Q ss_pred             CHHHHHHH
Q psy17691        217 FADAYSNM  224 (673)
Q Consensus       217 ~~~~~~~l  224 (673)
                      ++..|...
T Consensus       175 ~p~iw~ey  182 (435)
T COG5191         175 SPRIWIEY  182 (435)
T ss_pred             CchHHHHH
Confidence            99887653

>KOG1839|consensus

Probab=91.02  E-value=1.2  Score=53.67  Aligned_cols=148  Identities=25%  Similarity=0.181  Sum_probs=110.0

Q ss_pred             HHHHHHHHcCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHH
Q psy17691        121 SYIISVLLLIQVSEAEE------CYNT-ALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV--------FPEFAA  185 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~------~~~~-al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~  185 (673)
                      ..+......|.+.+|.+      .+.+ .-.+.|+....+..++.++...+++++|+..-.++.-+        .|+...
T Consensus       937 e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~ 1016 (1236)
T KOG1839|consen  937 EQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL 1016 (1236)
T ss_pred             hhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH
Confidence            33334445666776666      5552 23346888899999999999999999999998888654        244567


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRI--------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG-------  250 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~-------  250 (673)
                      .+.+++...+..++...|+..+.++..+        .|.-.....+++.++...++++.|+.+.+.|+.....       
T Consensus      1017 ~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l 1096 (1236)
T KOG1839|consen 1017 AYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKEL 1096 (1236)
T ss_pred             HhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccch
Confidence            8889998899999999999999988876        4565667789999999999999999999999985321       


Q ss_pred             -CHHHHHHHHHHHHHcCCC
Q psy17691        251 -FADAHSNLASIHKDSGKR  268 (673)
Q Consensus       251 -~~~a~~~La~~~~~~g~~  268 (673)
                       ....+..++.++...+++
T Consensus      1097 ~~~~~~~~~a~l~~s~~df 1115 (1236)
T KOG1839|consen 1097 ETALSYHALARLFESMKDF 1115 (1236)
T ss_pred             hhhhHHHHHHHHHhhhHHH
Confidence             233444555555555444

>KOG2422|consensus

Probab=90.82  E-value=22  Score=39.71  Aligned_cols=171  Identities=17%  Similarity=0.188  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhc
Q psy17691          2 IDLAIDTYRRAIEL------------QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTREL   69 (673)
Q Consensus         2 ~~eAi~~~~kAL~l------------~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l   69 (673)
                      |++|...|.-|.+.            +|.+.+.+..++.+...+|+.+.+..+...|.-....     |          +
T Consensus       254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~-----a----------~  318 (665)
T KOG2422|consen  254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDR-----A----------L  318 (665)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH-----H----------h
Confidence            56777777777664            5677888888999999888766666666555544321     1          1


Q ss_pred             CCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHH----HHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691         70 APGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF----SYIISVLLLIQVSEAEECYNTALRL  145 (673)
Q Consensus        70 ~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~----~~~~~~~~~g~~~~A~~~~~~al~~  145 (673)
                      .|......+.+....                           ..|.+...|    .++..+...|-+..|.++++-.+++
T Consensus       319 hp~F~~~sg~cRL~y---------------------------~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL  371 (665)
T KOG2422|consen  319 HPNFIPFSGNCRLPY---------------------------IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL  371 (665)
T ss_pred             ccccccccccccCcc---------------------------cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence            222111111111110                           123333333    2333444578888888888888888


Q ss_pred             CCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHH-----HhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Q psy17691        146 CPT-HADSLNNLANIK-REQGYIEEATRLYLKA-----LEVFPEFAAAHSNLASVLQQQGK---LTDALLHYKEAIRIQP  215 (673)
Q Consensus       146 ~p~-~~~a~~~Lg~~~-~~~g~~~eA~~~~~~a-----l~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~p  215 (673)
                      +|. ++-+...+-.+| .+..+|+=-++.++..     +..-|+.+ .-..+|..|.....   -+.|...+.+|+...|
T Consensus       372 dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  372 DPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence            887 655444444433 2334444344443333     12223321 11223344444333   3455556666666555

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.70  E-value=2.7  Score=38.54  Aligned_cols=83  Identities=11%  Similarity=-0.006  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        187 HSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG  266 (673)
Q Consensus       187 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g  266 (673)
                      +......-...++.+++...+...--+.|+.++....-|.++...|++.+|+..++...+-.+..+.+.--++.|+..+|
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33444445558899999999998888999999999999999999999999999999998888888888888999999998


Q ss_pred             CCc
Q psy17691        267 KRG  269 (673)
Q Consensus       267 ~~~  269 (673)
                      +.+
T Consensus        93 Dp~   95 (153)
T TIGR02561        93 DAE   95 (153)
T ss_pred             ChH
Confidence            865

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1258|consensus

Probab=90.52  E-value=7.8  Score=43.32  Aligned_cols=114  Identities=14%  Similarity=0.100  Sum_probs=93.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        126 VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF-PEFAAAHSNLASVLQQQGKLTDAL  204 (673)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~  204 (673)
                      ....|+++.....|++++--.....+.|...+.-....|+.+-|...+.++.++. |+.+..+..-+......|++..|.
T Consensus       307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~  386 (577)
T KOG1258|consen  307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK  386 (577)
T ss_pred             hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence            3457888888888888888777888888888888888888888888888888874 566777777888888888999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691        205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ  239 (673)
Q Consensus       205 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~  239 (673)
                      ..|++..+.-|+..++-........++|+.+.+..
T Consensus       387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence            99988888888888877777888888888888774

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.50  E-value=0.8  Score=46.97  Aligned_cols=62  Identities=26%  Similarity=0.380  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        203 ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       203 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      |+.+|.+|+.+.|.+...|+.+|.++...|+.=.|+-+|-+++-...-.+.+..||..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            56777777777777777777777777777777777777777776655557777777777766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG3616|consensus

Probab=90.41  E-value=7.9  Score=44.05  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ   35 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~   35 (673)
                      |+.|.. |-+.++..|+-...|..++..-...|+
T Consensus       460 f~ra~a-fles~~~~~da~amw~~laelale~~n  492 (1636)
T KOG3616|consen  460 FDRATA-FLESLEMGPDAEAMWIRLAELALEAGN  492 (1636)
T ss_pred             hHHHHH-HHHhhccCccHHHHHHHHHHHHHHhcc
Confidence            344443 334467778877788888777777665

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=90.33  E-value=25  Score=41.36  Aligned_cols=116  Identities=22%  Similarity=0.159  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----
Q psy17691        118 TTFSYIISVLLLIQVSEAEECYNTALRLCPT--H-------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-----  183 (673)
Q Consensus       118 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-----  183 (673)
                      ....++.......++.+|..+..++...-+.  .       ++.....|.+....|++++|++..+.++..-|.+     
T Consensus       417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r  496 (894)
T COG2909         417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR  496 (894)
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence            3445566666788999999999888776443  1       3455567888899999999999999999987765     


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHH--HHHHHHHHHHHcCC
Q psy17691        184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS----FAD--AYSNMGNTLKEMQD  233 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----~~~--~~~~lg~~~~~~g~  233 (673)
                      ..++..+|.+..-+|++++|..+.+++.+....    .-.  +.+..+.++..+|+
T Consensus       497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq  552 (894)
T COG2909         497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ  552 (894)
T ss_pred             hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence            457888999999999999999999999887322    222  34456788888893

>KOG1914|consensus

Probab=90.33  E-value=6  Score=43.60  Aligned_cols=122  Identities=11%  Similarity=0.101  Sum_probs=94.6

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        140 NTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD  219 (673)
Q Consensus       140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  219 (673)
                      ++-++.+|.+.++|+.|-.-+..+ .+++..+.|++.+...|..+.+|.......+..++|+.-...|.++|..--+ .+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence            677899999999999999888777 9999999999999999999999999999999999999999999999876443 55


Q ss_pred             HHH-HHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHH
Q psy17691        220 AYS-NMGNTLKEMQDIQGALQCYSRAIQ-------INPGFADAHSNLASIHK  263 (673)
Q Consensus       220 ~~~-~lg~~~~~~g~~~eA~~~~~~Al~-------l~p~~~~a~~~La~~~~  263 (673)
                      .|. .+..+-...|+...+.+..-+|.+       .++....+|...+..+.
T Consensus        88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~  139 (656)
T KOG1914|consen   88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLE  139 (656)
T ss_pred             HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence            554 344444555665555544444443       35666667776665543

>KOG1538|consensus

Probab=90.32  E-value=2.6  Score=47.06  Aligned_cols=109  Identities=16%  Similarity=0.151  Sum_probs=70.1

Q ss_pred             HHHcCCHHHHHHH----------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17691        126 VLLLIQVSEAEEC----------YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ  195 (673)
Q Consensus       126 ~~~~g~~~~A~~~----------~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  195 (673)
                      +...|+.++|+..          ++-+-+++-..-+.+..++..+.+...+.-|.+.|++.-..        ..+-..+.
T Consensus       713 LiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHv  784 (1081)
T KOG1538|consen  713 LISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHV  784 (1081)
T ss_pred             hhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhhee
Confidence            3445566665543          22333334445556666666677777777777777664221        23445566


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI  245 (673)
Q Consensus       196 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al  245 (673)
                      +.+++.+|....++--+.-   .++|+-.|..+.+..+++||.+.|.+|=
T Consensus       785 e~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAG  831 (1081)
T KOG1538|consen  785 ETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAG  831 (1081)
T ss_pred             ecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence            7888998887766543333   3478888999999999999998888764

>KOG1258|consensus

Probab=90.25  E-value=6.6  Score=43.85  Aligned_cols=139  Identities=11%  Similarity=0.067  Sum_probs=114.0

Q ss_pred             CHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17691        131 QVSEAEECYNTALRL-----CPT---HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTD  202 (673)
Q Consensus       131 ~~~~A~~~~~~al~~-----~p~---~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  202 (673)
                      ...+.+..++..++.     .|-   +...|......-...|+++.....|++++--.....+.|...+......|+.+-
T Consensus       270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~  349 (577)
T KOG1258|consen  270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSL  349 (577)
T ss_pred             hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhH
Confidence            445555566666553     222   244566777777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        203 ALLHYKEAIRIQ-PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       203 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      |-..+.++.++. |..+..+..-+.+....|++..|...+++..+-.|+...+-..-.......|+.+
T Consensus       350 ~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~  417 (577)
T KOG1258|consen  350 ANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLE  417 (577)
T ss_pred             HHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchh
Confidence            999999988874 6677888888899999999999999999999888998888777777777777765

>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long)

Probab=90.19  E-value=2.5  Score=44.27  Aligned_cols=81  Identities=14%  Similarity=0.062  Sum_probs=60.5

Q ss_pred             hhHHHHHHHcCCCCCeEEe-ccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHH
Q psy17691        558 ANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA  635 (673)
Q Consensus       558 ~~~~~~~~~~g~~~~rv~~-~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~  635 (673)
                      +.+.+...+.-- .+++.. ...+|.+||++.+..||++.-.| ---|--|.|=.|++|+||+...-.++-.     .|+
T Consensus       232 ~~V~~~~~~lF~-~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np~~~-----~l~  305 (360)
T PF07429_consen  232 QQVIQAGKELFG-AENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNPFWQ-----DLK  305 (360)
T ss_pred             HHHHHHHHHhcC-ccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCChHHH-----HHH
Confidence            445555444422 367765 56999999999999999998776 4456678899999999999887776654     577


Q ss_pred             hcCCCcccc
Q psy17691        636 TLGCPELIA  644 (673)
Q Consensus       636 ~~gl~~~ia  644 (673)
                      ..|++=+..
T Consensus       306 ~~~ipVlf~  314 (360)
T PF07429_consen  306 EQGIPVLFY  314 (360)
T ss_pred             hCCCeEEec
Confidence            888876554

This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall

>KOG4014|consensus

Probab=89.86  E-value=9.2  Score=36.35  Aligned_cols=144  Identities=13%  Similarity=0.061  Sum_probs=96.6

Q ss_pred             CCChhHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhhCCCCHHH
Q psy17691        114 PDDGTTFSYIISVLL--LIQVSEAEECYNTALRLCPTHADSLNNLANIKR-----EQGYIEEATRLYLKALEVFPEFAAA  186 (673)
Q Consensus       114 p~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~-----~~g~~~eA~~~~~~al~~~p~~~~~  186 (673)
                      ...++...+++.++.  +.++++|...|+.--+.+ .++...+.+|..+.     ..++...|++.|+.+-.  -+.+.+
T Consensus        31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a  107 (248)
T KOG4014|consen   31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA  107 (248)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence            344556666666665  678888888887765443 34566667776655     34678899999998876  456777


Q ss_pred             HHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------------------CCHH
Q psy17691        187 HSNLASVLQQQ-----G--KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM------------------------QDIQ  235 (673)
Q Consensus       187 ~~~la~~~~~~-----g--~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~------------------------g~~~  235 (673)
                      -.++|.++..-     +  +.++|.+++.++..++  +..+.++|...|..-                        .+.+
T Consensus       108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMd  185 (248)
T KOG4014|consen  108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMD  185 (248)
T ss_pred             HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHH
Confidence            77788776532     2  3778999999987764  445666666555543                        4556


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        236 GALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       236 eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      +|.++--+|-++  +++.+-.|+.+.|..
T Consensus       186 ka~qfa~kACel--~~~~aCAN~SrMykl  212 (248)
T KOG4014|consen  186 KALQFAIKACEL--DIPQACANVSRMYKL  212 (248)
T ss_pred             HHHHHHHHHHhc--CChHHHhhHHHHHHc
Confidence            777777666665  456777777777643

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=89.83  E-value=2.2  Score=43.25  Aligned_cols=71  Identities=17%  Similarity=0.073  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHS  256 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~  256 (673)
                      ...++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|.++|.+.-|++.++..++..|+.+.+-.
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            34445555666677777777777777777777777777777777777777777777777777777665543

>KOG0529|consensus

Probab=89.43  E-value=10  Score=40.61  Aligned_cols=127  Identities=17%  Similarity=0.097  Sum_probs=95.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----CHHHHH
Q psy17691        131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQG--YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG----KLTDAL  204 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~eA~  204 (673)
                      ..++-+.+...+++.+|+...+|+.+..++.+.+  ++..=++..+++++.+|.+..+|...=.+.....    ...+=+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            5677888899999999999999999999999776  4688899999999999999888776555544332    246678


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHc------CC------HHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        205 LHYKEAIRIQPSFADAYSNMGNTLKEM------QD------IQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       205 ~~~~~al~~~p~~~~~~~~lg~~~~~~------g~------~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      ++..+++.-++.|-.+|.+...++..+      |.      ...-++.-..|+-.+|++..+|+.
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence            889999999999999999988887632      21      223334445555556666666654

>KOG0985|consensus

Probab=89.35  E-value=27  Score=41.60  Aligned_cols=125  Identities=12%  Similarity=0.059  Sum_probs=68.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA  203 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  203 (673)
                      ....+.|.|++-+.++..+-+... .+.+-..|-.+|.+.++..|-.+..     ..|+.+. .-..|.-++..|.|+.|
T Consensus      1141 ~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aA 1213 (1666)
T KOG0985|consen 1141 DVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAA 1213 (1666)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHH
Confidence            344456677777777666655422 1222333444455555555443322     2344333 23456666667777777


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        204 LLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       204 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      .-+|..        ..-|..|+..+..+|+|..|...-++|-     +...|.....++.+.+++
T Consensus      1214 kl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn-----s~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1214 KLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN-----STKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred             HHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHhchhhh
Confidence            666643        3446677777777777777777777662     344555444444444444

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.28  E-value=5.2  Score=42.69  Aligned_cols=89  Identities=18%  Similarity=0.116  Sum_probs=65.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCC--------CC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        157 ANIKREQGYIEEATRLYLKALEVFP--------EF----------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA  218 (673)
Q Consensus       157 g~~~~~~g~~~eA~~~~~~al~~~p--------~~----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  218 (673)
                      |..++++++|..|..-|+.+|++..        ..          .-.--.|..+|...++.+.|+..--+.|.++|.+.
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            4455566666666666666666521        11          12334578889999999999999999999999998


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        219 DAYSNMGNTLKEMQDIQGALQCYSRAI  245 (673)
Q Consensus       219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al  245 (673)
                      .-+...|.|+..+.+|.+|-..+.-|.
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999998887666553

>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT

Probab=89.26  E-value=1.2  Score=45.66  Aligned_cols=89  Identities=16%  Similarity=0.185  Sum_probs=56.8

Q ss_pred             cChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHHH
Q psy17691        487 IDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQA  566 (673)
Q Consensus       487 ~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (673)
                      ......++...+++..|+..++++.+|..-.                                     ....   +.+..
T Consensus       138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~-------------------------------------~~~~---~~~~~  177 (269)
T PF05159_consen  138 SQADFLDMLESFAKENPDAKLVVKPHPDERG-------------------------------------GNKY---SYLEE  177 (269)
T ss_pred             cHhHHHHHHHHHHHHCCCCEEEEEECchhhC-------------------------------------CCCh---hHhhh
Confidence            3445677888888889999999887652110                                     0001   22233


Q ss_pred             cCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC
Q psy17691        567 LGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       567 ~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                      .--...++.+....+..+.+.   .+|.++-    -.+|+.+|||.+|.||||+.-
T Consensus       178 ~~~~~~~~~~~~~~~~~~Ll~---~s~~Vvt----inStvGlEAll~gkpVi~~G~  226 (269)
T PF05159_consen  178 LPNLPNVVIIDDDVNLYELLE---QSDAVVT----INSTVGLEALLHGKPVIVFGR  226 (269)
T ss_pred             hhcCCCeEEECCCCCHHHHHH---hCCEEEE----ECCHHHHHHHHcCCceEEecC
Confidence            211235666666666566555   5777652    357899999999999999654

Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=88.76  E-value=2.1  Score=36.24  Aligned_cols=55  Identities=20%  Similarity=0.256  Sum_probs=39.9

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        195 QQQGKLTDALLHYKEAIRIQPS---------FADAYSNMGNTLKEMQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       195 ~~~g~~~eA~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p  249 (673)
                      .+.|+|.+|++.+.+.+.....         ...+..++|.++...|++++|+..+++|+++..
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4456777776666666554221         135678899999999999999999999998743

>KOG1464|consensus

Probab=88.72  E-value=29  Score=35.10  Aligned_cols=117  Identities=12%  Similarity=0.084  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPE------------FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF--A  218 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~  218 (673)
                      ...||.+|+..++|.+-.+.+++.-+-...            -.+.|..--..|..+++-.+-...|++++.+...-  +
T Consensus       148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP  227 (440)
T KOG1464|consen  148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP  227 (440)
T ss_pred             cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence            346899999999888877777665443221            13455555677888888888888999999875432  2


Q ss_pred             HHHH----HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH--HHHHHHHHHHHcCCCc
Q psy17691        219 DAYS----NMGNTLKEMQDIQGALQCYSRAIQIN-----PGFAD--AHSNLASIHKDSGKRG  269 (673)
Q Consensus       219 ~~~~----~lg~~~~~~g~~~eA~~~~~~Al~l~-----p~~~~--a~~~La~~~~~~g~~~  269 (673)
                      ....    .=|..+.+.|++++|-..|-+|++-.     |....  -|.-|+..+.+.|-..
T Consensus       228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNP  289 (440)
T KOG1464|consen  228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP  289 (440)
T ss_pred             HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCC
Confidence            2222    22455778899999999998888753     22222  3455677777776443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=88.67  E-value=1.4  Score=45.14  Aligned_cols=62  Identities=32%  Similarity=0.501  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17691        135 AEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ  196 (673)
Q Consensus       135 A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  196 (673)
                      |+.+|++|+.+.|++...++.||.++...|+.-+|+-+|-+++-..--.+.+..||..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999887766668888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=88.62  E-value=2.4  Score=35.81  Aligned_cols=28  Identities=39%  Similarity=0.496  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRI  213 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~  213 (673)
                      +..++|.++...|++++|+..+++++++
T Consensus        43 all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   43 ALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3444555555555555555555555544

>KOG3807|consensus

Probab=88.49  E-value=11  Score=38.99  Aligned_cols=129  Identities=17%  Similarity=0.104  Sum_probs=79.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA  203 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  203 (673)
                      ....+..+..+-++.-..+++++|+.+.++..|+.-  +.--..+|.+.++++++...    ..++-..-...+|...+|
T Consensus       192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~~da  265 (556)
T KOG3807|consen  192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQHEA  265 (556)
T ss_pred             HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccchhh
Confidence            344455677788888899999999999998888753  33346788888988887632    222233333333333333


Q ss_pred             HHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHc
Q psy17691        204 LLHYKEAIRIQPSFAD--AYSNMGNTLKEMQDIQGALQCYSRAIQINPGF--ADAHSNLASIHKDS  265 (673)
Q Consensus       204 ~~~~~~al~~~p~~~~--~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~--~~a~~~La~~~~~~  265 (673)
                      ..      +.+ .+..  +-..|+.|-.++|+..||++.++...+-.|-.  -.++-||...+.+.
T Consensus       266 ~~------rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~  324 (556)
T KOG3807|consen  266 QL------RRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLEL  324 (556)
T ss_pred             hh------hcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence            21      111 2222  33567888888888888888888877666522  23445555444443

>PRK02797 4-alpha-L-fucosyltransferase; Provisional

Probab=88.45  E-value=3.8  Score=42.41  Aligned_cols=80  Identities=16%  Similarity=0.089  Sum_probs=60.2

Q ss_pred             hhHHHHHHHcCCCCCeEEec-cCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHH
Q psy17691        558 ANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA  635 (673)
Q Consensus       558 ~~~~~~~~~~g~~~~rv~~~-~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~  635 (673)
                      +.+++...+..- ++++..+ ..+|.+||++.+..|||..--| ---|--|+|=.+.+|+|||...-.++-.     .|.
T Consensus       193 ~~V~~~~~~lF~-~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~fwq-----dl~  266 (322)
T PRK02797        193 EEVRQAGLALFG-AENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPFWQ-----DLT  266 (322)
T ss_pred             HHHHHHHHHhcC-cccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCchHH-----HHH
Confidence            455555555442 4676555 6899999999999999998777 4456678899999999999987776654     477


Q ss_pred             hcCCCccc
Q psy17691        636 TLGCPELI  643 (673)
Q Consensus       636 ~~gl~~~i  643 (673)
                      ..|++=+.
T Consensus       267 e~gv~Vlf  274 (322)
T PRK02797        267 EQGLPVLF  274 (322)
T ss_pred             hCCCeEEe
Confidence            77887643

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=87.97  E-value=3.4  Score=41.82  Aligned_cols=76  Identities=20%  Similarity=0.028  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        152 SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT  227 (673)
Q Consensus       152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  227 (673)
                      ...++=..+.+.++++.|..+.++.+.++|+++.-+...|.+|.+.|.+.-|++.++..++..|+++.+-......
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            3445556778889999999999999999999998899999999999999999999999999999987766544433

>KOG2041|consensus

Probab=87.69  E-value=13  Score=42.22  Aligned_cols=81  Identities=17%  Similarity=0.189  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK  229 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~  229 (673)
                      ..++.++|..+..+..+++|.++|.+.-.        .-++..+++...+|++-..    ....-|++...+-.+|..+.
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~  863 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFT  863 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHH
Confidence            34667777777777777777777665421        1233344444444433222    22223455555555555555


Q ss_pred             HcCCHHHHHHHHH
Q psy17691        230 EMQDIQGALQCYS  242 (673)
Q Consensus       230 ~~g~~~eA~~~~~  242 (673)
                      ..|--++|.++|-
T Consensus       864 svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  864 SVGMCDQAVEAYL  876 (1189)
T ss_pred             hhchHHHHHHHHH
Confidence            5555555555443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.66  E-value=4.5  Score=41.46  Aligned_cols=63  Identities=17%  Similarity=0.191  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR  212 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  212 (673)
                      ..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|+..|+...|+..|++.-+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555555555555555555554433

>KOG3616|consensus

Probab=87.55  E-value=4.4  Score=45.96  Aligned_cols=102  Identities=19%  Similarity=0.172  Sum_probs=60.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK  208 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  208 (673)
                      ..+|.+|+..++.....+. ....|-.++.-|...|+|+.|.+.|.++-        ....--..|-+.|++++|.+.-+
T Consensus       745 akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~  815 (1636)
T KOG3616|consen  745 AKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAE  815 (1636)
T ss_pred             hhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHH
Confidence            3456666655554433221 12345566777888888888888887752        22233455667788888877666


Q ss_pred             HHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691        209 EAIRIQPSF-ADAYSNMGNTLKEMQDIQGALQCY  241 (673)
Q Consensus       209 ~al~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~  241 (673)
                      ++..  |.. ...|...+.-+.+.|++.+|.+.|
T Consensus       816 e~~~--~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  816 ECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            5432  322 334555566666666666665544

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=86.91  E-value=8.2  Score=46.44  Aligned_cols=130  Identities=14%  Similarity=0.021  Sum_probs=91.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQ----G---YIEEATRLYLKALEVFPEFAAAHSNLASV  193 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~----g---~~~eA~~~~~~al~~~p~~~~~~~~la~~  193 (673)
                      ..++..+.|++|+..|++.-...|..   .++.+..|..+.++    |   .+++|+..|++.- -.|.-+--|...|.+
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  561 (932)
T PRK13184        483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALV  561 (932)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHH
Confidence            34556778999999999999998875   55778888776643    2   4666776666632 346667778888999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHH
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM-----QDIQGALQCYSRAIQINPGFADA  254 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~Al~l~p~~~~a  254 (673)
                      |..+|+|+|-+++|.-|++..|+++..-...-.+..++     .+...|....--++...|.....
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (932)
T PRK13184        562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISS  627 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence            99999999999999999999998876433322222221     23345666666777777766543

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=86.77  E-value=9.8  Score=39.56  Aligned_cols=93  Identities=15%  Similarity=0.117  Sum_probs=57.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691        131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV--FPEFAAAHSNLASVLQQQGKLTDALLHYK  208 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~  208 (673)
                      +|..-..+|+-.....|+ +-+-.|.+....+..-.+.++...+.....  -.++...+...|..+.++|+.++|...|+
T Consensus       311 DW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd  389 (415)
T COG4941         311 DWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD  389 (415)
T ss_pred             ChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence            565555666665555554 344445555555554455556555554443  22334556667778888888888888888


Q ss_pred             HHHHhCCCCHHHHHHH
Q psy17691        209 EAIRIQPSFADAYSNM  224 (673)
Q Consensus       209 ~al~~~p~~~~~~~~l  224 (673)
                      +++.+.++..+..+.+
T Consensus       390 rAi~La~~~aer~~l~  405 (415)
T COG4941         390 RAIALARNAAERAFLR  405 (415)
T ss_pred             HHHHhcCChHHHHHHH
Confidence            8888877766654443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=86.62  E-value=34  Score=37.26  Aligned_cols=125  Identities=11%  Similarity=-0.073  Sum_probs=92.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17691        123 IISVLLLIQVSEAEECYNTALRLCPTHAD-----SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ  197 (673)
Q Consensus       123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  197 (673)
                      +-.+.+++++++|...|.+..+...+.+.     ++.++-.-.+-+++.+.-....-..-+..|..+....-.|...+++
T Consensus        13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~   92 (549)
T PF07079_consen   13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ   92 (549)
T ss_pred             hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence            34455688999999999999887665533     3333333334467777777777777778898888888899999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        198 GKLTDALLHYKEAIRIQPSF---------------ADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       198 g~~~eA~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      +++.+|++.+...-+.-...               ...-...+.++...|++.++...+++.+..
T Consensus        93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            99999999887765542111               112234678899999999999999998764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional

Probab=86.30  E-value=3.8  Score=43.83  Aligned_cols=53  Identities=13%  Similarity=-0.026  Sum_probs=41.6

Q ss_pred             eEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhh
Q psy17691        573 RILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRV  629 (673)
Q Consensus       573 rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~  629 (673)
                      .+.+.|..+-.+..+.+..||+++-.  -+|.+-.  |-++|+|||++-|++...|.
T Consensus       244 ~~~l~g~~sL~el~ali~~a~l~v~n--DSGp~Hl--AaA~g~P~v~lfGpt~p~~~  296 (352)
T PRK10422        244 VTALAGKTTFPELGALIDHAQLFIGV--DSAPAHI--AAAVNTPLICLFGATDHIFW  296 (352)
T ss_pred             cccccCCCCHHHHHHHHHhCCEEEec--CCHHHHH--HHHcCCCEEEEECCCCcccc
Confidence            35678999999999999999999754  3455555  45679999999998766554

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=86.25  E-value=2.4  Score=28.86  Aligned_cols=18  Identities=33%  Similarity=0.425  Sum_probs=6.7

Q ss_pred             HHHHHHHHcCCHHHHHHH
Q psy17691        189 NLASVLQQQGKLTDALLH  206 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~  206 (673)
                      .+|..+..+|++++|++.
T Consensus         6 ~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    6 GLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHH
Confidence            333333334444444433

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=85.89  E-value=8.9  Score=36.64  Aligned_cols=93  Identities=13%  Similarity=0.044  Sum_probs=70.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHH----HHHHHHH
Q psy17691        122 YIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPE--FAA----AHSNLAS  192 (673)
Q Consensus       122 ~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~----~~~~la~  192 (673)
                      .+..+.+.|+.++|+++|.++.+.....   .+.+.++-.+....+++.....+..++-..-..  +..    ....-|.
T Consensus        42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL  121 (177)
T PF10602_consen   42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGL  121 (177)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            3445567999999999999988764332   567888889999999999999999998776332  222    3344567


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Q psy17691        193 VLQQQGKLTDALLHYKEAIRIQ  214 (673)
Q Consensus       193 ~~~~~g~~~eA~~~~~~al~~~  214 (673)
                      .+...++|.+|.+.|-.+..-.
T Consensus       122 ~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  122 ANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHhchHHHHHHHHHccCcCC
Confidence            7788899999999987765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK14089 ipid-A-disaccharide synthase; Provisional

Probab=85.82  E-value=1.3  Score=47.11  Aligned_cols=54  Identities=15%  Similarity=0.160  Sum_probs=35.8

Q ss_pred             HhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHH---hcCCCcccc
Q psy17691        587 RRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA---TLGCPELIA  644 (673)
Q Consensus       587 ~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~---~~gl~~~ia  644 (673)
                      ..++.||++|-    ..||+|+|++.+|+|.|...--...+..-+..+.   .+|++.+|+
T Consensus       231 ~~m~~aDlal~----~SGT~TLE~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~  287 (347)
T PRK14089        231 KALLEAEFAFI----CSGTATLEAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFF  287 (347)
T ss_pred             HHHHhhhHHHh----cCcHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhc
Confidence            56778999985    4588888999999998874433333333334444   456666664

>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative

Probab=85.53  E-value=4.5  Score=43.07  Aligned_cols=52  Identities=13%  Similarity=-0.008  Sum_probs=41.4

Q ss_pred             EEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhh
Q psy17691        574 ILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRV  629 (673)
Q Consensus       574 v~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~  629 (673)
                      +.+.|..+-.+..+.+..+|+++-.  -+|.+-.  |-++|+|+|++-|++...+.
T Consensus       243 ~~l~g~~sL~el~ali~~a~l~Vs~--DSGp~Hl--AaA~g~p~v~Lfgpt~p~~~  294 (344)
T TIGR02201       243 TSLAGKLTLPQLAALIDHARLFIGV--DSVPMHM--AAALGTPLVALFGPSKHIFW  294 (344)
T ss_pred             cccCCCCCHHHHHHHHHhCCEEEec--CCHHHHH--HHHcCCCEEEEECCCCcccc
Confidence            4578999999999999999999765  4555554  56789999999998665544

This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.

>KOG1839|consensus

Probab=84.97  E-value=5  Score=48.75  Aligned_cols=134  Identities=20%  Similarity=0.180  Sum_probs=97.9

Q ss_pred             cCCCChhHHHHHH-HHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q psy17691        112 LSPDDGTTFSYII-SVLLLIQVSEAEECYNTALRL--------CPTHADSLNNLANIKREQGYIEEATRLYLKALEV---  179 (673)
Q Consensus       112 l~p~~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~---  179 (673)
                      +.|+....+..+. .+...+++++|+..-+++.-+        .|+....+.+++...+..++...|...+.+++.+   
T Consensus       968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen  968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred             cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence            4556666665544 445689999999988777654        2455678889999999999999999999999876   


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        180 -----FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS--------FADAYSNMGNTLKEMQDIQGALQCYSRAI  245 (673)
Q Consensus       180 -----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al  245 (673)
                           .|.-.....+++.++...++++.|+++.+.|++.+..        ....+..++.++..++++..|....+...
T Consensus      1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred             ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence                 4555667789999999999999999999999986432        23445555666555555555555554443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=84.70  E-value=38  Score=39.19  Aligned_cols=122  Identities=18%  Similarity=0.117  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCH
Q psy17691        132 VSEAEECYNTALRLCPT----HADSLNNLANIKR-EQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKL  200 (673)
Q Consensus       132 ~~~A~~~~~~al~~~p~----~~~a~~~Lg~~~~-~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~  200 (673)
                      ...|+.+++-+++..+-    .+.+.+.+|.++. ...++++|+.++++++.+...+      ..+.+.++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            46788888888853221    2557888999887 7899999999999998886443      23455678888888777


Q ss_pred             HHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Q psy17691        201 TDALLHYKEAIRIQPS----FADAYSNM--GNTLKEMQDIQGALQCYSRAIQIN--PGFADA  254 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~----~~~~~~~l--g~~~~~~g~~~eA~~~~~~Al~l~--p~~~~a  254 (673)
                      . |+..+++.++...+    .....+.+  ...+...+++..|++.+++.....  .+++.+
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence            7 99999999887554    12222222  222333379999999999988775  344443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=84.62  E-value=4.8  Score=41.25  Aligned_cols=64  Identities=19%  Similarity=0.237  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      ..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4577788999999999999999999999999999999999999999999999999999987664

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=84.30  E-value=3.4  Score=28.13  Aligned_cols=33  Identities=6%  Similarity=0.069  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q psy17691        219 DAYSNMGNTLKEMQDIQGALQC--YSRAIQINPGF  251 (673)
Q Consensus       219 ~~~~~lg~~~~~~g~~~eA~~~--~~~Al~l~p~~  251 (673)
                      +.+..+|..+..+|++++|+..  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            5678899999999999999999  55777777653

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=84.13  E-value=7.1  Score=31.71  Aligned_cols=51  Identities=16%  Similarity=0.166  Sum_probs=28.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHH
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYS---NMGNTLKEMQDIQGALQCYSRA  244 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~---~lg~~~~~~g~~~eA~~~~~~A  244 (673)
                      ++.+.+.++|+..++++++..++..+-+.   .+..+|...|+|.+++++--+=
T Consensus        16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q   69 (80)
T PF10579_consen   16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ   69 (80)
T ss_pred             HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666555444333   3334555666666666554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.11  E-value=1.7  Score=30.02  Aligned_cols=28  Identities=36%  Similarity=0.399  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17691        152 SLNNLANIKREQGYIEEATRLYLKALEV  179 (673)
Q Consensus       152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~  179 (673)
                      ++..||.+-...++|++|+..|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4455555555556666666665555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2581|consensus

Probab=83.96  E-value=15  Score=39.26  Aligned_cols=125  Identities=15%  Similarity=0.050  Sum_probs=90.0

Q ss_pred             HcCCHHHHHHHHHHHHHhC-CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC-HHHHHHHHH
Q psy17691        128 LLIQVSEAEECYNTALRLC-PT--------HADSLNNLANIKREQGYIEEATRLYLKALEVF-----PEF-AAAHSNLAS  192 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~-p~--------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-----p~~-~~~~~~la~  192 (673)
                      ..+++++|..+-+..+..- -.        .+..|+.+..+|...|+...-...+..-+...     ..- +...+.|=.
T Consensus       138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr  217 (493)
T KOG2581|consen  138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR  217 (493)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence            4678999888777665531 11        14568888889999999777666666555432     221 344556667


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh--CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        193 VLQQQGKLTDALLHYKEAIRI--QP--SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       193 ~~~~~g~~~eA~~~~~~al~~--~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~  252 (673)
                      .|...+.|+.|-....++.--  ..  ..+...+.+|.+..-+++|+.|.+++-+|+...|++.
T Consensus       218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            788888999998887776521  11  2345677899999999999999999999999999843

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=83.93  E-value=70  Score=34.87  Aligned_cols=125  Identities=12%  Similarity=0.035  Sum_probs=79.6

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691        127 LLLIQVSEAEECYNTALRLCPTHADSLNNLANI-KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALL  205 (673)
Q Consensus       127 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  205 (673)
                      .+..-.+.|...|-++-+..--..+++..-|.+ +..+|++.-|-..|+-.+...|+.+..-+..-..+...++-+.|..
T Consensus       408 ~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nara  487 (660)
T COG5107         408 LRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARA  487 (660)
T ss_pred             HHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHH
Confidence            344556777777777765542333344433433 4567888888888888888888887666666666777788888888


Q ss_pred             HHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        206 HYKEAIRIQPSF--ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       206 ~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~  251 (673)
                      .|+++++.-.+.  ...|..+-..-..-|+.+.+...=++..+..|+.
T Consensus       488 LFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         488 LFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence            888777643322  3344444444455566666666666666666653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=83.88  E-value=1.4  Score=27.50  Aligned_cols=22  Identities=18%  Similarity=0.064  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q psy17691        220 AYSNMGNTLKEMQDIQGALQCY  241 (673)
Q Consensus       220 ~~~~lg~~~~~~g~~~eA~~~~  241 (673)
                      ++.++|.++..+|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3444555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=83.30  E-value=1.5  Score=27.33  Aligned_cols=21  Identities=38%  Similarity=0.276  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHH
Q psy17691        153 LNNLANIKREQGYIEEATRLY  173 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~  173 (673)
                      ...+|.++..+|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            344444444444444444443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=83.02  E-value=4.4  Score=48.67  Aligned_cols=97  Identities=14%  Similarity=0.158  Sum_probs=77.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        157 ANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQ----G---KLTDALLHYKEAIRIQPSFADAYSNMGN  226 (673)
Q Consensus       157 g~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~eA~~~~~~al~~~p~~~~~~~~lg~  226 (673)
                      ..++...+.|++|+..|++.-.-.|+.   .++.+..|.++..+    |   .+++|+..|++. .-.|.-+--|...|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHH
Confidence            345667788999999999999999876   57888888887654    2   366677766653 335666777888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691        227 TLKEMQDIQGALQCYSRAIQINPGFADA  254 (673)
Q Consensus       227 ~~~~~g~~~eA~~~~~~Al~l~p~~~~a  254 (673)
                      +|.++|+++|-+++|.-|++..|+++..
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            9999999999999999999999888754

>KOG0546|consensus

Probab=82.66  E-value=1.3  Score=46.29  Aligned_cols=79  Identities=23%  Similarity=0.209  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK  263 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~  263 (673)
                      ....+++.+-...+.+..|+.....+++.++....+++..+..+....++++|++.++.+....|++......+...-.
T Consensus       276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~  354 (372)
T KOG0546|consen  276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ  354 (372)
T ss_pred             ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence            4556678888888888888888888888888888889999999999999999999999999888888777665554433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=82.60  E-value=12  Score=36.37  Aligned_cols=55  Identities=9%  Similarity=0.157  Sum_probs=32.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q psy17691        183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS----FADAYSNMGNTLKEMQDIQGAL  238 (673)
Q Consensus       183 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~eA~  238 (673)
                      .++..+.||..|. ..+.++|+..+.+++++...    +++.+..|+.++.++|+++.|-
T Consensus       140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            3555555655554 44566666666666665432    3566666666666666666653

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.57  E-value=2.2  Score=29.49  Aligned_cols=29  Identities=28%  Similarity=0.551  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        219 DAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      +++..||.+-...++|++|+..|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45667777777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=82.47  E-value=5.2  Score=38.75  Aligned_cols=73  Identities=22%  Similarity=0.111  Sum_probs=54.4

Q ss_pred             CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q psy17691        131 QVSEAEECYNTALRL-CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE----FAAAHSNLASVLQQQGKLTDAL  204 (673)
Q Consensus       131 ~~~~A~~~~~~al~~-~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~  204 (673)
                      .-++|...|-++-.. .-++++..+.||..|. ..+.++|+..+.+++++.+.    +++.+..|+.++.++|+++.|-
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            445666655554322 1256888888888777 57789999999999988544    4888999999999999998874

>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.17  E-value=2.7  Score=42.53  Aligned_cols=45  Identities=16%  Similarity=0.171  Sum_probs=39.1

Q ss_pred             CeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeec
Q psy17691        572 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL  620 (673)
Q Consensus       572 ~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~  620 (673)
                      =||+.+|.+|+++|=.++..||+-+    --|--|..-|.|+|.|.+.-
T Consensus       238 lrvvklPFvpqddyd~LL~lcD~n~----VRGEDSFVRAq~agkPflWH  282 (370)
T COG4394         238 LRVVKLPFVPQDDYDELLWLCDFNL----VRGEDSFVRAQLAGKPFLWH  282 (370)
T ss_pred             eEEEEecCCcHhHHHHHHHhcccce----eecchHHHHHHHcCCCcEEE
Confidence            3789999999999999999999875    46778889999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	673
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		1e-110
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		6e-54
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		4e-26
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		2e-20
2vsy_A	568	Xanthomonas Campestris Putative Ogt (Xcc0866), Apos		8e-23
2vsn_A	568	Structure And Topological Arrangement Of An O-Glcna		8e-23
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-15
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		3e-14
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-14
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-12
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-07
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		2e-05
3cv0_A	327	Structure Of Peroxisomal Targeting Signal 1 (Pts1)		3e-05
3cvq_A	327	Structure Of Peroxisomal Targeting Signal 1 (pts1)		3e-05
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		1e-04
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		2e-04
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		2e-04
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		7e-04
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		9e-04

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/382 (53%), Positives = 243/382 (63%), Gaps = 70/382 (18%)
Query: 315 FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQ 374
           F L     Q MWLGYPGTSGA +MDYIITD  TSP  +A QYSEKLA+MP T+FIGDH  
Sbjct: 333 FALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHAN 392
Query: 375 MFPHLKERFIVSGK-----YSEKLAF-----------MPDTYFI-------GDHNQM--- 408
           MFPHLK++ ++  K     Y  ++             +PD   +       GD+      
Sbjct: 393 MFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNT 452
Query: 409 ---FPHLKERFIVSGKT-MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVIT 464
               P +    I      MI  GQ+Q ++NG  + NGLAT Q N K ATGEEVP++I++T
Sbjct: 453 ALNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVT 512
Query: 465 SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISXXX 524
           +R QYGLPEDAIVYCNFNQLYKIDPSTLQMW N+LK                        
Sbjct: 513 TRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKR----------------------- 549
Query: 525 XXXXXXXSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEE 584
                            VPNS+LWLL+FPAVGE NIQ  AQ +GL Q+RI+FS VA KEE
Sbjct: 550 -----------------VPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEE 592
Query: 585 HVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA 644
           HVRRGQLADVCLDTPLCNGHTT MDVLW GTP+VT+PGETLASRVAASQL  LGC ELIA
Sbjct: 593 HVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIA 652
Query: 645 RTHKEYQDIAIRLGTDRDYCEK 666
           +  +EY+DIA++LGTD +Y +K
Sbjct: 653 KNRQEYEDIAVKLGTDLEYLKK 674

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score =  209 bits (531), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 127/250 (50%), Positives = 151/250 (60%), Gaps = 30/250 (12%)
Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           ++ A   Y +AIE QPNF  A+ NL      +G+               PNF DAY NL 
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210
Query: 47  NALKEKGQINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSR 104
           N LKE     +  +    Y R   L+P + +  G ++  +       L         +  
Sbjct: 211 NVLKEA---RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT----YRRA 263
Query: 105 VEIFCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQ 163
           +E     L P     +  + + L     V+EAE+CYNTALRLCPTHADSLNNLANIKREQ
Sbjct: 264 IE-----LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318
Query: 164 GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN 223
           G IEEA RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSN
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378
Query: 224 MGNTLKEMQD 233
           MGNTLKEMQD
Sbjct: 379 MGNTLKEMQD 388

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 139/312 (44%), Gaps = 50/312 (16%)
Query: 12  AIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQ-- 54
           AI+  P   +AY NL N  KE+GQ               P+F D Y NLA AL   G   
Sbjct: 59  AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 55  ------INVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF 108
                 ++ L   P  Y              V SD GN     L++++  +         
Sbjct: 119 GAVQAYVSALQYNPDLYC-------------VRSDLGN-----LLKALGRLEEAKA---- 156
Query: 109 CYALSPDDGTTFSYIISVLLLIQVSEAE-----ECYNTALRLCPTHADSLNNLANIKREQ 163
           CY  + +    F+   S L  +  ++ E       +  A+ L P   D+  NL N+ +E 
Sbjct: 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216
Query: 164 GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN 223
              + A   YL+AL + P  A  H NLA V  +QG +  A+  Y+ AI +QP F DAY N
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWL 283
           + N LKE   +  A  CY+ A+++ P  AD+ +NLA+I ++ G     +R    +   + 
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336
Query: 284 LLLDAHSNLASI 295
               AHSNLAS+
Sbjct: 337 EFAAAHSNLASV 348

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 9/193 (4%)
Query: 112 LSPD--DGTTFSYIISVLLLIQVSEAE---ECYNTALRLCPTHADSLNNLANIKREQGYI 166
           L PD  DG    YI     L+   + E   + Y +AL+  P      ++L N+ +  G +
Sbjct: 96  LKPDFIDG----YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151
Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
           EEA   YLKA+E  P FA A SNL  V   QG++  A+ H+++A+ + P+F DAY N+GN
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211
Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLL 286
            LKE +    A+  Y RA+ ++P  A  H NLA ++ + G     I T   +        
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271
Query: 287 DAHSNLASIHKDS 299
           DA+ NLA+  K+ 
Sbjct: 272 DAYCNLANALKEK 284

>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Apostructure Length = 568

Iteration: 1
 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 92/196 (46%), Gaps = 40/196 (20%)
Query: 465 SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISXXX 524
           SR Q GLPE  +V C FN  YK++P ++                                
Sbjct: 367 SRTQCGLPEQGVVLCCFNNSYKLNPQSM-------------------------------- 394
Query: 525 XXXXXXXSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEE 584
                   A    VL+ VP+S+LWLL  P   +A ++A A A G+D  R++F       +
Sbjct: 395 --------ARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQ 446
Query: 585 HVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA 644
           ++ R + AD+ LDT   N HTT+ D LWTG PV+T PGET A+RVA S    LG  E+  
Sbjct: 447 YLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNV 506
Query: 645 RTHKEYQDIAIRLGTD 660
                +   A+ L +D
Sbjct: 507 ADDAAFVAKAVALASD 522

>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac Transferase Homolog: Insight Into Molecular Control Of Intracellular Glycosylation Length = 568

Iteration: 1
 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 92/196 (46%), Gaps = 40/196 (20%)
Query: 465 SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISXXX 524
           SR Q GLPE  +V C FN  YK++P ++                                
Sbjct: 367 SRTQCGLPEQGVVLCCFNNSYKLNPQSM-------------------------------- 394
Query: 525 XXXXXXXSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEE 584
                   A    VL+ VP+S+LWLL  P   +A ++A A A G+D  R++F       +
Sbjct: 395 --------ARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQ 446
Query: 585 HVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA 644
           ++ R + AD+ LDT   N HTT+ D LWTG PV+T PGET A+RVA S    LG  E+  
Sbjct: 447 YLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNV 506
Query: 645 RTHKEYQDIAIRLGTD 660
                +   A+ L +D
Sbjct: 507 ADDAAFVAKAVALASD 522

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 67/118 (56%)
Query: 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
             EA E Y  AL L P  A++  NL N   +QG  +EA   Y KALE+ P  A A  NL 
Sbjct: 17  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
           +   +QG   +A+ +Y++A+ + P  A+A+ N+GN   +  D   A++ Y +A++++P
Sbjct: 77  NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 68/117 (58%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A++  NL N   +QG  +EA   Y KALE++P  A A  NL +   +QG   +A+ +Y++
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
           A+ + P+ A+A+ N+GN   +  D   A++ Y +A+++ P  A+A  NL +  +  G
Sbjct: 69  ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 68/117 (58%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A++  NL N   +QG  +EA   Y KALE+ P  A A  NL +   +QG   +A+ +Y++
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
           A+ + P+ A+A+ N+GN   +  D   A++ Y +A++++P  A+A  NL +  +  G
Sbjct: 69  ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 65/117 (55%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A++  NL N   +QG  ++A   Y KALE+ P  A+A  NL +   +QG    A+ +Y++
Sbjct: 9   AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
           A+ + P+ A A+   GN   +  D Q A++ Y +A++++P  A A  NL +  +  G
Sbjct: 69  ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 49/83 (59%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
           A A  NL +   +QG   +A+ +Y++A+ + P+ A+A+ N+GN   +  D   A++ Y +
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 244 AIQINPGFADAHSNLASIHKDSG 266
           A++++P  A+A  NL +  +  G
Sbjct: 69  ALELDPNNAEAKQNLGNAKQKQG 91

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
           A A  NL +   +QG   +A+ +Y++A+ + P  A+A+ N+GN   +  D   A++ Y +
Sbjct: 3   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 244 AIQINP 249
           A++++P
Sbjct: 63  ALELDP 68

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 50/109 (45%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A+ L    N + +    E A   Y KA+E+ P  A    N A+   + G    A+   + 
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
           AI I P+++ AY  MG  L  +     A+  Y +A++++P      SNL
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120

>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide Length = 327

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
           E   L   ALE+ P  A  H++L  +         A  + + A+ ++P  A  ++ +G T
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215
Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
           L      Q AL  Y+RA+ INPG+     N+A
Sbjct: 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMA 247

>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed To Pts1 Peptide (7- Skl) Length = 327

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
           E   L   ALE+ P  A  H++L  +         A  + + A+ ++P  A  ++ +G T
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215
Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
           L      Q AL  Y+RA+ INPG+     N+A
Sbjct: 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMA 247

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 135 AEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS-- 192
           A   Y   L+  P + ++L  L     + G   +A     K + +    A A+  L S  
Sbjct: 24  AIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83
Query: 193 -VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
            ++ ++    DAL   + AI +   +ADAY  +G     M +   A++ Y + I I PGF
Sbjct: 84  FMIDEKQAAIDAL---QRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140
Query: 252 ADAHSNLASIHKDSGKR 268
             A+ ++   ++  G R
Sbjct: 141 IRAYQSIGLAYEGKGLR 157

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQG 198
           P  A  LNNLA + + QG  EE    Y +ALE++        P  A   +NLAS   +QG
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Query: 199 KLTDALLHYKEAI 211
           K  DA   YKE +
Sbjct: 184 KYQDAETLYKEIL 196

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 54/108 (50%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
           P  A  + N  N   ++G   +A + Y +A++  P+ A  +SN A+   +  +   AL  
Sbjct: 13  PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72
Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA 254
            +E I+++P+F   Y+     L+ M+D   A+  Y +A+ ++    +A
Sbjct: 73  CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQG 198
           P  A  LNNLA + + QG  EE    Y +ALE++        P  A   +NLAS   +QG
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209
Query: 199 KLTDALLHYKEAI 211
           K   A   YKE +
Sbjct: 210 KFKQAETLYKEIL 222

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQG 198
           P  A  L+NLA + + QG  EE    Y +ALE++        P  A   +NLAS   +QG
Sbjct: 124 PDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Query: 199 KLTDALLHYKEAI 211
           K  DA   YKE +
Sbjct: 184 KYQDAETLYKEIL 196

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	673
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-110
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-37
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-82
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-35
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-28
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-28
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-63
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-61
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-60
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-58
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-53
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-47
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-43
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-34
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-20
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-53
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-48
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-35
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-27
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-53
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-42
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-34
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-27
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-51
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-41
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-38
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-19
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-49
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-42
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-35
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-34
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-32
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-17
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-49
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-42
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-42
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-41
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-40
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-40
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-36
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-28
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-48
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-44
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-38
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-35
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-28
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-23
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-48
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-45
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-40
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-17
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-47
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-46
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-41
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-35
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-35
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-47
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-46
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-44
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-43
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-41
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-39
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-30
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-28
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-25
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-45
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-26
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-45
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-38
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-36
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-33
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-26
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-45
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-40
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-34
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-32
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-44
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-42
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-37
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-37
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-23
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-22
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-20
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-20
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-42
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-37
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-32
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-31
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-19
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-42
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-40
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-16
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-41
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-37
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-30
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-30
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-25
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-25
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-20
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-41
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-33
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-31
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-09
3q3e_A	631	HMW1C-like glycosyltransferase; N-glycosylation; 2	4e-39
3q3e_A	631	HMW1C-like glycosyltransferase; N-glycosylation; 2	4e-10
3q3e_A	631	HMW1C-like glycosyltransferase; N-glycosylation; 2	2e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-39
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-36
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-36
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-31
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-38
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-36
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-32
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-29
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-26
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-24
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-17
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-38
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-35
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-34
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-23
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-19
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-15
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-37
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-29
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-23
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-34
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-34
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-33
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-32
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-32
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-32
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-32
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-31
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-30
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-30
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-27
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-25
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-21
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-17
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-17
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-32
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-31
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-28
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-17
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	6e-31
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-27
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	8e-17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-28
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-23
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-28
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-24
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-26
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-21
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-16
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-26
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-21
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-21
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-20
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-12
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-21
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-25
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-23
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-07
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-25
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-16
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-08
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-08
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	6e-25
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	8e-23
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-24
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-21
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-23
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-18
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-23
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-13
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	6e-23
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-20
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	6e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	7e-23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-19
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-17
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-22
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-22
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-17
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-22
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-21
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-20
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-11
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-22
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-17
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-11
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-21
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-20
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-18
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-20
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-09
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-20
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	6e-12
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-19
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-13
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-10
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-19
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-10
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-19
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-16
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-04
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-18
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	8e-11
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-04
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-17
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-11
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	8e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-17
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-17
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-15
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-10
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-17
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-15
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-14
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-17
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	9e-17
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-13
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	7e-12
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	6e-07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	8e-17
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-08
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-16
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-09
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-04
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-16
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-08
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	5e-16
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-13
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	2e-12
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	9e-09
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	2e-08
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-08
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-07
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	6e-12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-05
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	8e-12
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-10
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-09
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-07
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-05
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	6e-10
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-04
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-10
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	9e-08
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-10
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	3e-10
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	5e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-09
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	2e-09
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	2e-08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-08
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	5e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	7e-08
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-07
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-07
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	5e-07
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	2e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-05
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	3e-05
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	4e-05

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  348 bits (893), Expect = e-110
 Identities = 261/755 (34%), Positives = 346/755 (45%), Gaps = 193/755 (25%)

Query: 15  LQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLH 59
             P   D+  NLAN  +E+G                P F  A+ NLA+ L+++G++    
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL---- 59

Query: 60  KPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALS--PDDG 117
                   + A                                  +  +  A+   P   
Sbjct: 60  --------QEA----------------------------------LMHYKEAIRISPTFA 77

Query: 118 TTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA 176
             +S + + L  +  V  A +CY  A+++ P  AD+ +NLA+I ++ G I EA   Y  A
Sbjct: 78  DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA 137

Query: 177 LEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQG 236
           L++ P+F  A+ NLA  LQ     TD     K+ + I     +  + + +       +  
Sbjct: 138 LKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK-NRLPSVHPHHSMLYP 196

Query: 237 ALQCYSRAIQINPGFADAHSNLAS------IHKDSGKRGFFIRTDLNS--------AYFW 282
               + +AI    G                  KD       +R    S        ++  
Sbjct: 197 LSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLM 256

Query: 283 LLLLDAHSNLA----------------------------SIHKDSVVMSLLQIIHEFIVG 314
             +   H+                                + +          IH+  + 
Sbjct: 257 QSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIH 316

Query: 315 FDLTFYLF----------------QVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSE 358
             +    +                Q MWLGYPGTSGA +MDYIITD  TSP  +A QYSE
Sbjct: 317 ILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSE 376

Query: 359 KLAFMPDTYFIGDHNQMFPHLKERFIVSGK----------------YSEKLAFMPDTYFI 402
           KLA+MP T+FIGDH  MFPHLK++ ++  K                    L  +PD   +
Sbjct: 377 KLAYMPHTFFIGDHANMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIV 436

Query: 403 --------------GDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTN 448
                              M          +   MI  GQ+Q ++NG  + NGLAT Q N
Sbjct: 437 KMKCPDGGDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQIN 496

Query: 449 TKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILW 508
            K ATGEEVP++I++T+R QYGLPEDAIVYCNFNQLYKIDPSTLQMW N           
Sbjct: 497 NKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWAN----------- 545

Query: 509 LLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALG 568
                                        +LK VPNS+LWLL+FPAVGE NIQ  AQ +G
Sbjct: 546 -----------------------------ILKRVPNSVLWLLRFPAVGEPNIQQYAQNMG 576

Query: 569 LDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASR 628
           L Q+RI+FS VA KEEHVRRGQLADVCLDTPLCNGHTT MDVLW GTP+VT+PGETLASR
Sbjct: 577 LPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASR 636

Query: 629 VAASQLATLGCPELIARTHKEYQDIAIRLGTDRDY 663
           VAASQL  LGC ELIA+  +EY+DIA++LGTD +Y
Sbjct: 637 VAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEY 671

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  146 bits (369), Expect = 7e-37
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 1/163 (0%)

Query: 111 ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
              P    + + + ++      + EA   Y  AL + P  A + +NLA++ ++QG ++EA
Sbjct: 3   GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62

Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
              Y +A+ + P FA A+SN+ + L++   +  AL  Y  AI+I P+FADA+SN+ +  K
Sbjct: 63  LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 122

Query: 230 EMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFI 272
           +  +I  A+  Y  A+++ P F DA+ NLA   +       + 
Sbjct: 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 73.3 bits (179), Expect = 1e-13
 Identities = 66/157 (42%), Positives = 85/157 (54%), Gaps = 38/157 (24%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKG-------- 53
           I  AI +YR A++L+P+FPDAYCNLA+ L+        D       ++            
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPS 186

Query: 54  -----------------------------QINVLHKPPYKYTRELAPGNRI-RIGYVSSD 83
                                        +INVLHKPPY++ ++L   +   R+GYVSSD
Sbjct: 187 VHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSD 246

Query: 84  FGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF 120
           FGNHPTSHLMQS+PGMHN  + E+FCYALSPDDGT F
Sbjct: 247 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNF 283

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  269 bits (690), Expect = 3e-82
 Identities = 128/608 (21%), Positives = 191/608 (31%), Gaps = 188/608 (30%)

Query: 111 ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
           AL P      + +  V     + +EA      A    P H      L +   + G  E A
Sbjct: 51  ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA 110

Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQG---KLTDALLHYKEAIRIQPSFADAYSNMGN 226
              Y +A ++ PE     + L +  ++      L       + A+       + ++ +  
Sbjct: 111 AAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170

Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR---GFFIRTDLNS---AY 280
                     A +  + A       A +   LA     S      GF       +     
Sbjct: 171 DAS-------AAEQLACARTRAQAIAASVRPLAPTRVRSKGPLRVGFVS-NGFGAHPTGL 222

Query: 281 FWLLLLDAHS-------------------------NLASIHKDSVVMSLLQIIHEFIV-- 313
             + L +A                             AS   D   +  L    + I   
Sbjct: 223 LTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQASTLHDVTALGHLATA-KHIRHH 281

Query: 314 GFDLTFYL------------------FQVMWLGYPGTSGASYMDYIITDAVTSPLALASQ 355
           G DL F L                   QV WL YPGTSGA +MDY++ DA   P AL   
Sbjct: 282 GIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPF 341

Query: 356 YSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKER 415
           YSE +                                   +   +   D +++       
Sbjct: 342 YSEHVLR---------------------------------LQGAFQPSDTSRVVAEPP-- 366

Query: 416 FIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDA 475
                                                            SR Q GLPE  
Sbjct: 367 -------------------------------------------------SRTQCGLPEQG 377

Query: 476 IVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSAST 535
           +V C FN  YK++P ++   + VL+ VP+S+LWLL  P   +A +               
Sbjct: 378 VVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARL--------------- 422

Query: 536 SIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC 595
                                    +A A A G+D  R++F       +++ R + AD+ 
Sbjct: 423 -------------------------RAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLF 457

Query: 596 LDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAI 655
           LDT   N HTT+ D LWTG PV+T PGET A+RVA S    LG  E+       +   A+
Sbjct: 458 LDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAV 517

Query: 656 RLGTDRDY 663
            L +D   
Sbjct: 518 ALASDPAA 525

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  139 bits (353), Expect = 3e-35
 Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 6/166 (3%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
                      A+R  P    +   LA+ +   G          + L + P    A + L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
             V   Q +  +A +  ++A    P        +G+ L++    + A   Y+RA Q+ P 
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 251 FADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIH 296
                + L +  +                    +       + ++ 
Sbjct: 124 EPYITAQLLNWRRRLCDWRAL------DVLSAQVRAAVAQGVGAVE 163

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  119 bits (301), Expect = 1e-28
 Identities = 63/415 (15%), Positives = 105/415 (25%), Gaps = 85/415 (20%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
               +   R A+  +P    A+  LA+A    G                P  P+A   L 
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 47  NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
                + +                                     L Q+           
Sbjct: 65  RVRWTQQRHAEAAV------------------------------LLQQAS---------- 84

Query: 107 IFCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
                 +P+      ++   L    Q   A   Y  A +L P        L N +R    
Sbjct: 85  ----DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCD 140

Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
                 L  +      +   A    A + +       A      A     + A +   + 
Sbjct: 141 WRALDVLSAQVRAAVAQGVGAVEPFAFLSED----ASAAEQLACARTRAQAIAASVRPLA 196

Query: 226 NTLKEMQD------IQGALQCYSRAIQINPGFAD---------AHSNLASIHKDSGKRGF 270
            T    +       +      +   +     F            H    S    S  R  
Sbjct: 197 PTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR 256

Query: 271 FIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVGFDLTFYL---FQVMWL 327
             +         +  L   +    I    + +             ++        QV WL
Sbjct: 257 LAQAS---TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWL 313

Query: 328 GYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKER 382
            YPGTSGA +MDY++ DA   P AL   YSE +  +   +   D +++      R
Sbjct: 314 AYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSRVVAEPPSR 368

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  119 bits (299), Expect = 2e-28
 Identities = 17/105 (16%), Positives = 30/105 (28%)

Query: 163 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS 222
                        A+   P+   A   LA      G  T   +  +  + + P   +A +
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 223 NMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
            +G      Q    A     +A    P        L    +D+G+
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ 106

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  212 bits (543), Expect = 9e-63
 Identities = 91/329 (27%), Positives = 144/329 (43%), Gaps = 58/329 (17%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           +  AI+ YR A+ L+P+F D Y NLA AL   G                P+      +L 
Sbjct: 83  LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142

Query: 47  NALKEKGQ----INVLHKPPYKYTRELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGM 99
           N LK  G+            Y    E  P        +G V +  G    +         
Sbjct: 143 NLLKALGRLEEAKAC-----YLKAIETQPNFAVAWSNLGCVFNAQGEIWLA--------- 188

Query: 100 HNKSRVEIFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLN 154
                  I  +     L P+    +  + +VL        A   Y  AL L P HA    
Sbjct: 189 -------IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241

Query: 155 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ 214
           NLA +  EQG I+ A   Y +A+E+ P F  A+ NLA+ L+++G + +A   Y  A+R+ 
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 215 PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR----GF 270
           P+ AD+ +N+ N  +E  +I+ A++ Y +A+++ P FA AHSNLAS+ +  GK       
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361

Query: 271 FIRT-DLNSAYFWLLLLDAHSNLASIHKD 298
           +     ++  +      DA+SN+ +  K+
Sbjct: 362 YKEAIRISPTFA-----DAYSNMGNTLKE 385

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  208 bits (531), Expect = 5e-61
 Identities = 81/322 (25%), Positives = 126/322 (39%), Gaps = 78/322 (24%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           +D +      AI+  P   +AY NL N  KE+GQ               P+F D Y NLA
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108

Query: 47  NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
            AL   G +            E A                                    
Sbjct: 109 AALVAAGDM------------EGA------------------------------------ 120

Query: 107 IFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKR 161
           +  Y      +PD     S + ++L  L ++ EA+ CY  A+   P  A + +NL  +  
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180

Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
            QG I  A   + KA+ + P F  A+ NL +VL++      A+  Y  A+ + P+ A  +
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240

Query: 222 SNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG----FFIRT-DL 276
            N+     E   I  A+  Y RAI++ P F DA+ NLA+  K+ G        +     L
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

Query: 277 NSAYFWLLLLDAHSNLASIHKD 298
              +      D+ +NLA+I ++
Sbjct: 301 CPTHA-----DSLNNLANIKRE 317

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  205 bits (524), Expect = 4e-60
 Identities = 79/322 (24%), Positives = 129/322 (40%), Gaps = 78/322 (24%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
            + A     +    +P+       L++   +  +               P   +AY NL 
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74

Query: 47  NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
           N  KE+GQ+            + A                                    
Sbjct: 75  NVYKERGQL------------QEA------------------------------------ 86

Query: 107 IFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKR 161
           I  Y     L PD    +  + + L+    +  A + Y +AL+  P      ++L N+ +
Sbjct: 87  IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146

Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
             G +EEA   YLKA+E  P FA A SNL  V   QG++  A+ H+++A+ + P+F DAY
Sbjct: 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206

Query: 222 SNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR----GFFIR-TDL 276
            N+GN LKE +    A+  Y RA+ ++P  A  H NLA ++ + G        + R  +L
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266

Query: 277 NSAYFWLLLLDAHSNLASIHKD 298
              +      DA+ NLA+  K+
Sbjct: 267 QPHFP-----DAYCNLANALKE 283

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  200 bits (512), Expect = 3e-58
 Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 44/289 (15%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
           + A+  Y  A++  P+      +L N LK  G+               PNF  A+ NL  
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177

Query: 48  ALKEKGQIN--VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHL-MQSVPGMHNKSR 104
               +G+I   + H   ++    L P              N   +++ + +V  +     
Sbjct: 178 VFNAQGEIWLAIHH---FEKAVTLDP--------------NFLDAYINLGNV--LKEARI 218

Query: 105 VE--IFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLA 157
            +  +  Y    +LSP+       +  V      +  A + Y  A+ L P   D+  NLA
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 158 NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
           N  +E+G + EA   Y  AL + P  A + +NLA++ ++QG + +A+  Y++A+ + P F
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
           A A+SN+ + L++   +Q AL  Y  AI+I+P FADA+SN+ +  K+  
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  186 bits (476), Expect = 3e-53
 Identities = 128/256 (50%), Positives = 147/256 (57%), Gaps = 44/256 (17%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
           + A   Y +AIE QPNF  A+ NL      +G+               PNF DAY NL N
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211

Query: 48  ALKEKGQIN--VLHKPPYKYTRELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGMHNK 102
            LKE    +  V     Y     L+P +      +  V  + G    +            
Sbjct: 212 VLKEARIFDRAVAA---YLRALSLSPNHAVVHGNLACVYYEQGLIDLA------------ 256

Query: 103 SRVEIFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLA 157
               I  Y     L P     +  + + L     V+EAE+CYNTALRLCPTHADSLNNLA
Sbjct: 257 ----IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

Query: 158 NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
           NIKREQG IEEA RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+F
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

Query: 218 ADAYSNMGNTLKEMQD 233
           ADAYSNMGNTLKEMQD
Sbjct: 373 ADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  170 bits (432), Expect = 4e-47
 Identities = 56/265 (21%), Positives = 98/265 (36%), Gaps = 68/265 (25%)

Query: 23  YCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKYTR 67
              LA+   + G                P+       L++   +  ++            
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRL------------ 49

Query: 68  ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGTTFSYI 123
           + +                                              +P     +S +
Sbjct: 50  DRS------------------------------------AHFSTLAIKQNPLLAEAYSNL 73

Query: 124 ISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
            +V     Q+ EA E Y  ALRL P   D   NLA      G +E A + Y+ AL+  P+
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133

Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYS 242
                S+L ++L+  G+L +A   Y +AI  QP+FA A+SN+G       +I  A+  + 
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193

Query: 243 RAIQINPGFADAHSNLASIHKDSGK 267
           +A+ ++P F DA+ NL ++ K++  
Sbjct: 194 KAVTLDPNFLDAYINLGNVLKEARI 218

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  159 bits (404), Expect = 4e-43
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 10/173 (5%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
               AE       R  P +   L  L++I  +   ++ +      A++  P  A A+SNL
Sbjct: 14  DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
            +V +++G+L +A+ HY+ A+R++P F D Y N+   L    D++GA+Q Y  A+Q NP 
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133

Query: 251 FADAHSNLASIHKDSGK----RGFFIRT-DLNSAYFWLLLLDAHSNLASIHKD 298
                S+L ++ K  G+    +  +++  +    +       A SNL  +   
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA-----VAWSNLGCVFNA 181

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  134 bits (339), Expect = 2e-34
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 10/151 (6%)

Query: 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
              LA+ + + G  E A R  ++     P+       L+S+  Q  +L  +      AI+
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK----- 267
             P  A+AYSN+GN  KE   +Q A++ Y  A+++ P F D + NLA+    +G      
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 268 RGFFIRTDLNSAYFWLLLLDAHSNLASIHKD 298
           + +      N   +        S+L ++ K 
Sbjct: 122 QAYVSALQYNPDLY-----CVRSDLGNLLKA 147

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 92.2 bits (230), Expect = 4e-20
 Identities = 61/183 (33%), Positives = 77/183 (42%), Gaps = 68/183 (37%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           IDLAIDTYRRAIELQP+FPDAYCNLANALKEKG                P   D+  NLA
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

Query: 47  NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
           N  +E+G I            E A                                    
Sbjct: 313 NIKREQGNI------------EEA------------------------------------ 324

Query: 107 IFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKR 161
           +  Y     + P+     S + SVL    ++ EA   Y  A+R+ PT AD+ +N+ N  +
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384

Query: 162 EQG 164
           E  
Sbjct: 385 EMQ 387

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  186 bits (474), Expect = 3e-53
 Identities = 43/289 (14%), Positives = 90/289 (31%), Gaps = 63/289 (21%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           +  A+  +  A++  P   +A+  L     E  Q               P+   A   LA
Sbjct: 80  LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALA 139

Query: 47  NALKEKGQIN---------VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVP 97
            +   +             + + P Y                                  
Sbjct: 140 VSFTNESLQRQACEILRDWLRYTPAY---------------------------------A 166

Query: 98  GMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTH--ADSLNN 155
            +   +        L    G +   + S+L      E +E +  A+RL PT    D    
Sbjct: 167 HLVTPAEEGAGGAGL----GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222

Query: 156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
           L  +    G  ++A   +  AL V P      + L + L    +  +A+  Y+ A+ +QP
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282

Query: 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264
            +  +  N+G +   +   + A++ +  A+ +            ++ ++
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  174 bits (442), Expect = 1e-48
 Identities = 46/306 (15%), Positives = 80/306 (26%), Gaps = 89/306 (29%)

Query: 3   DLAIDTYRRAIELQPNFP----DAYCNLANALKEKGQ---------------PNFPDAYC 43
           DL   TY +  + +   P               ++G                P   +A+ 
Sbjct: 43  DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102

Query: 44  NLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKS 103
            L     E  Q              LA                                 
Sbjct: 103 YLGTTQAENEQE------------LLA--------------------------------- 117

Query: 104 RVEIFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLAN 158
              I        L PD+ T    +           +A E     LR  P +A  +     
Sbjct: 118 ---ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174

Query: 159 IKR---------------EQGYIEEATRLYLKALEVFPEF--AAAHSNLASVLQQQGKLT 201
                                   E   L+L A+ + P          L  +    G+  
Sbjct: 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 234

Query: 202 DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI 261
            A+  +  A+ ++P+    ++ +G TL      + A+  Y RA+++ PG+  +  NL   
Sbjct: 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 294

Query: 262 HKDSGK 267
             + G 
Sbjct: 295 CINLGA 300

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  136 bits (345), Expect = 2e-35
 Identities = 37/276 (13%), Positives = 73/276 (26%), Gaps = 63/276 (22%)

Query: 9   YRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRE 68
           + RA     +  D +  L        Q    +     A A       + L    Y    +
Sbjct: 3   FERAKSAIESDVDFWDKL--------QAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQ 54

Query: 69  LAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLL 128
               N                   ++  P    +              G         L 
Sbjct: 55  FEEENP------------------LRDHPQPFEE--------------GLRR------LQ 76

Query: 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188
              +  A   +  A++  P H ++   L   + E      A     + LE+ P+   A  
Sbjct: 77  EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM 136

Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS---------------NMGNTLKEMQD 233
            LA     +     A    ++ +R  P++A   +                +  +L     
Sbjct: 137 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196

Query: 234 IQGALQCYSRAIQINPGF--ADAHSNLASIHKDSGK 267
                + +  A++++P     D    L  +   SG+
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  114 bits (287), Expect = 1e-27
 Identities = 25/185 (13%), Positives = 49/185 (26%), Gaps = 25/185 (13%)

Query: 139 YNTALRLCPTHADSLNNLAN------------IKREQGYIEEATRLYLKALEVFPE---- 182
           +  A     +  D  + L                    Y +  +  Y K  +   E    
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62

Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYS 242
                        Q+G L +A+L ++ A++  P   +A+  +G T  E +    A+    
Sbjct: 63  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122

Query: 243 RAIQINPGFADAHSNLASIHKDSGK---------RGFFIRTDLNSAYFWLLLLDAHSNLA 293
           R +++ P    A   LA    +                                  + L 
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182

Query: 294 SIHKD 298
              + 
Sbjct: 183 PSKRI 187

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 27/256 (10%), Positives = 53/256 (20%), Gaps = 88/256 (34%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYC---------NLANALKEKG------------------ 34
              A +  R  +   P +               L  + +  G                  
Sbjct: 148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 207

Query: 35  ---QPNFPDA--YCNLANALKEKGQIN--VLHKPPYKYTRELAPGNRI---RIGYVSSDF 84
               P   D    C L       G+ +  V     +     + P + +   ++G      
Sbjct: 208 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC---FTAALSVRPNDYLLWNKLGAT---- 260

Query: 85  GNHPTSHLMQSVPGMHNKSRVE--IFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEE 137
                         + N ++ E  +  Y     L P    +   +    + +    EA E
Sbjct: 261 --------------LANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306

Query: 138 CYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ 197
            +  AL +             +                            S L   L   
Sbjct: 307 HFLEALNMQRKSRGPRGEGGAMSEN-----------------------IWSTLRLALSML 343

Query: 198 GKLTDALLHYKEAIRI 213
           G+           +  
Sbjct: 344 GQSDAYGAADARDLST 359

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 23/203 (11%), Positives = 47/203 (23%), Gaps = 61/203 (30%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN--VLHK 60
               + +  A+ L P   D                  D  C L       G+ +  V   
Sbjct: 198 LEVKELFLAAVRLDPTSIDP-----------------DVQCGLGVLFNLSGEYDKAVDC- 239

Query: 61  PPYKYTRELAPGNRI---RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE--IFCY----A 111
             +     + P + +   ++G                    + N ++ E  +  Y     
Sbjct: 240 --FTAALSVRPNDYLLWNKLGAT------------------LANGNQSEEAVAAYRRALE 279

Query: 112 LSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIK---------- 160
           L P    +   +    + +    EA E +  AL +             +           
Sbjct: 280 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339

Query: 161 -REQGYIEEATRLYLKALEVFPE 182
               G  +       + L     
Sbjct: 340 LSMLGQSDAYGAADARDLSTLLT 362

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 9/79 (11%), Positives = 16/79 (20%), Gaps = 16/79 (20%)

Query: 205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQG------------ALQCYSRAIQINP--- 249
           + ++ A     S  D +  +   L+EM                     Y +  Q      
Sbjct: 1   MEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENP 60

Query: 250 -GFADAHSNLASIHKDSGK 267
                            G 
Sbjct: 61  LRDHPQPFEEGLRRLQEGD 79

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  184 bits (468), Expect = 9e-53
 Identities = 43/288 (14%), Positives = 79/288 (27%), Gaps = 61/288 (21%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           +  A   +    +  P   +A+ +L     E  +               P     +  LA
Sbjct: 37  LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96

Query: 47  NALKEKGQIN---------VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVP 97
            +   +   N         +L +P Y                                  
Sbjct: 97  VSHTNEHNANAALASLRAWLLSQPQY---------------------------------E 123

Query: 98  GMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLA 157
            + + +        +  DD    S         +  E     + AL + P  A    +L 
Sbjct: 124 QLGSVNLQA----DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179

Query: 158 NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
            +       + A     +A+E+ P+ A   + L + L    +  +AL  Y  A+ I P +
Sbjct: 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239

Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265
                NM  +   M     A +   RAI +  G        +     S
Sbjct: 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRS 287

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  154 bits (392), Expect = 3e-42
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 134 EAEECYNTALRLCPTHAD---------------SLNNLANIKREQGYIEEATRLYLKALE 178
            A       L   P +                 ++ +            E   L   ALE
Sbjct: 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166

Query: 179 VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL 238
           + P  A  H++L  +         A  + + A+ ++P  A  ++ +G TL      Q AL
Sbjct: 167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226

Query: 239 QCYSRAIQINPGFADAHSNLASIHKDSGK 267
             Y+RA+ INPG+     N+A  + +  +
Sbjct: 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQ 255

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  131 bits (331), Expect = 8e-34
 Identities = 16/143 (11%), Positives = 37/143 (25%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
            + +    Y         + ++         +   + EA   +    +  PE   A  +L
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
                +  K   A++    A  + P     ++ +  +     +   AL      +   P 
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121

Query: 251 FADAHSNLASIHKDSGKRGFFIR 273
           +    S       D         
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSE 144

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  113 bits (285), Expect = 1e-27
 Identities = 17/104 (16%), Positives = 38/104 (36%)

Query: 164 GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN 223
           G++ +    Y         +          + +   L +A L ++   +  P   +A+ +
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           +G T  E +    A+   + A  ++P     H+ LA  H +   
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 5/65 (7%), Positives = 14/65 (21%), Gaps = 15/65 (23%)

Query: 5  AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
              Y         + +       ++ +                  P   +A+ +L    
Sbjct: 6  NNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQ 65

Query: 50 KEKGQ 54
           E  +
Sbjct: 66 AENEK 70

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 8/73 (10%), Positives = 19/73 (26%), Gaps = 4/73 (5%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA-S 192
            A +    A+ +           +        + +  R+ L  +   P+           
Sbjct: 258 LAAKQLVRAIYMQVGGTTPTGEASREATRS--MWDFFRMLLNVMNR-PDLVELTYAQNVE 314

Query: 193 VLQQQGKLTDALL 205
              ++  L   LL
Sbjct: 315 PFAKEFGLQSMLL 327

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  180 bits (459), Expect = 2e-52
 Identities = 42/273 (15%), Positives = 80/273 (29%), Gaps = 38/273 (13%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQP--NFPDAYCNLANALKEKGQINVLH 59
           +  +   +  +  L P               +G    ++  A      A++E  +  + +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60

Query: 60  KPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPD 115
                        N      + S       +                +  Y     L   
Sbjct: 61  ------------INF---ANLLSSVNELERA----------------LAFYDKALELDSS 89

Query: 116 DGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYL 174
             T +    +V +      EA++ +  ALR    + D    L  +  +    + A     
Sbjct: 90  AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149

Query: 175 KALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI 234
           +A+E+      A       L  +G L +AL  +       P  ADA+ N G T    ++ 
Sbjct: 150 RAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR 209

Query: 235 QGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           + AL+   +AI I P    A      +      
Sbjct: 210 EKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 70.6 bits (174), Expect = 7e-14
 Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 14/108 (12%)

Query: 200 LTDALLHYKEAIRIQPSFADAYSNMGNTL----KEMQDIQGALQCYSRAIQINPGFADAH 255
           +  +  H+  +  + P  +   S  G        E  D + A + +++AI+ N   A  +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60

Query: 256 SNLASIHKDSGKR----GFFIRT-DLNSAYFWLLLLDAHSNLASIHKD 298
            N A++     +      F+ +  +L+S+        A+    +++  
Sbjct: 61  INFANLLSSVNELERALAFYDKALELDSSAA-----TAYYGAGNVYVV 103

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  179 bits (456), Expect = 4e-51
 Identities = 45/292 (15%), Positives = 92/292 (31%), Gaps = 42/292 (14%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
                   +E  P            L E  +               P+ P ++  +    
Sbjct: 41  CYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100

Query: 50  KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
              G  N   +        L        G     +G+   S  ++     H+++   +  
Sbjct: 101 LMVGHKNEHARRYLSKATTLEKTY----GPAWIAYGH---SFAVE---SEHDQA---MAA 147

Query: 110 Y----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
           Y     L         YI     L      AE  ++ AL + P     ++ +  +  + G
Sbjct: 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207

Query: 165 YIEEATRLYLKALEVFPE---------FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
             + A + +L ALE             +    +NL  V ++  K  +AL ++++A+ + P
Sbjct: 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267

Query: 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
             A  YS +G     M + + A+  +  A+ +      + + L    +    
Sbjct: 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  152 bits (387), Expect = 2e-41
 Identities = 38/324 (11%), Positives = 82/324 (25%), Gaps = 86/324 (26%)

Query: 9   YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
              +++      D   +LA                       P            L E  
Sbjct: 11  IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN 70

Query: 54  QINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
           + N L    Y   +  +L P              ++P S                   +A
Sbjct: 71  KANELF---YLSHKLVDLYP--------------SNPVSW------------------FA 95

Query: 112 LSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATR 171
           +    G  +      ++  +   A    + A  L  T+  +     +    +   ++A  
Sbjct: 96  V----GCYYL-----MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA 146

Query: 172 LYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM 231
            Y  A ++          +            A   + +A+ I P        +G    + 
Sbjct: 147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206

Query: 232 QDIQGALQCYSRAIQINPG---------FADAHSNLASIHKDSGKRGFFIRTDLNSA--- 279
            + + A + +  A++             +    +NL  + +   K           A   
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK--------YAEALDY 258

Query: 280 YFWLLLLD-----AHSNLASIHKD 298
           +   L+L       +S +  IH  
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSL 282

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  143 bits (362), Expect = 5e-38
 Identities = 31/266 (11%), Positives = 75/266 (28%), Gaps = 69/266 (25%)

Query: 1   LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNL 45
             + A     +A  L+  +  A+    ++   + +                        +
Sbjct: 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165

Query: 46  ANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRV 105
                                 +LA                       Q+          
Sbjct: 166 GLEYGLTNNS------------KLA------------------ERFFSQA---------- 185

Query: 106 EIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTH---------ADSLNN 155
                +++P+D      +  V     +   AE+ +  AL                  LNN
Sbjct: 186 ----LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241

Query: 156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
           L ++ R+     EA   + +AL + P+ A+ +S +  +    G   +A+ ++  A+ ++ 
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 216 SFADAYSNMGNTLKEMQDIQGALQCY 241
               + + +G+ ++       A    
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 87.3 bits (217), Expect = 7e-19
 Identities = 16/140 (11%), Positives = 34/140 (24%), Gaps = 11/140 (7%)

Query: 165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224
           Y + +  +  ++++   E      +LA                   +   P  A      
Sbjct: 3   YNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62

Query: 225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK-----RGFFIR-TDLNS 278
             TL E+           + + + P    +   +   +   G      R +  + T L  
Sbjct: 63  IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122

Query: 279 AYFWLLLLDAHSNLASIHKD 298
            Y       A          
Sbjct: 123 TY-----GPAWIAYGHSFAV 137

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  176 bits (448), Expect = 1e-49
 Identities = 44/293 (15%), Positives = 75/293 (25%), Gaps = 74/293 (25%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           + + I     AI   P   +A+  L     E                  PN   A   LA
Sbjct: 81  LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140

Query: 47  NALKEKGQIN---------VLHKPPYK---YTRELAPGNRIRIGYVSSDFGNHPTSHLMQ 94
            +                 +   P YK     ++ +PG   R+     D           
Sbjct: 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVL------- 193

Query: 95  SVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTH--ADS 152
                                                    +E Y  A          D 
Sbjct: 194 --------------------------------------EGVKELYLEAAHQNGDMIDPDL 215

Query: 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
              L  +    G    A   +  AL V PE  +  + L + L    +  +A+  Y  A+ 
Sbjct: 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275

Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265
           IQP F  +  N+G +   +   + A+  +  A+ +     +           +
Sbjct: 276 IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGN 328

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  155 bits (394), Expect = 4e-42
 Identities = 38/309 (12%), Positives = 79/309 (25%), Gaps = 66/309 (21%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANA-----------------------LKEKGQPNFPDA 41
           A        E        +  +A                            +        
Sbjct: 8   AKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPG 67

Query: 42  YCNLANALKEKGQIN--VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLM----QS 95
                    ++G +   +L     +      P                  +       Q+
Sbjct: 68  AFEEGLKRLKEGDLPVTILF---MEAAILQDP--------------GDAEAWQFLGITQA 110

Query: 96  VPGMHNKSRVEIFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHA 150
                  +   I        L P++      +           +A E     ++  P + 
Sbjct: 111 ENENEQAA---IVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYK 167

Query: 151 DSLNNLANIKRE----------QGYIEEATRLYLKALEVFPEF--AAAHSNLASVLQQQG 198
             + N                    +E    LYL+A     +       + L  +    G
Sbjct: 168 YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227

Query: 199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
           +   A+  +  A+ ++P     ++ +G TL      + A++ Y+RA++I PGF  +  NL
Sbjct: 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL 287

Query: 259 ASIHKDSGK 267
                + G 
Sbjct: 288 GISCINLGA 296

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  137 bits (346), Expect = 1e-35
 Identities = 24/181 (13%), Positives = 48/181 (26%), Gaps = 12/181 (6%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
            VS +E+ Y                    + ++G +         A+   P  A A   L
Sbjct: 46  TVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFL 105

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
                +      A++  +  + +QP+   A   +  +       Q A +     I+ NP 
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

Query: 251 FADAHSNLASIHKDSGKRGFFIRT-----DLNSAYFWLLLL-------DAHSNLASIHKD 298
           +     N       + +             +   Y             D  + L  +   
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225

Query: 299 S 299
           S
Sbjct: 226 S 226

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  134 bits (340), Expect = 1e-34
 Identities = 38/266 (14%), Positives = 70/266 (26%), Gaps = 69/266 (25%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
             A +  +  I+  P +     N   +     +         ++ +  +   +  + K  
Sbjct: 150 QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR---------MSKSPVDSSVLEGV-KEL 199

Query: 63  YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY 122
           Y                                                L    G  F  
Sbjct: 200 YLEAAHQNGDMIDPDLQ------------------------------TGL----GVLFH- 224

Query: 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
                L  + + A + +N AL + P      N L          EEA   Y +ALE+ P 
Sbjct: 225 -----LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279

Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA--------YSNMGNTLKEMQDI 234
           F  +  NL       G   +A+ ++  A+ +Q    +           N+   L+    +
Sbjct: 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL 339

Query: 235 QGA-----------LQCYSRAIQINP 249
                         L    RA  ++P
Sbjct: 340 MDQPELFQAANLGDLDVLLRAFNLDP 365

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  127 bits (320), Expect = 4e-32
 Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 8/142 (5%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIK--------REQGYIEEATRLYLKALEVFPEFAA 185
            A+    +              +A           + Q  +  + + Y    E   +   
Sbjct: 7   RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66

Query: 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI 245
                     ++G L   +L  + AI   P  A+A+  +G T  E ++ Q A+    R +
Sbjct: 67  GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126

Query: 246 QINPGFADAHSNLASIHKDSGK 267
           ++ P    A   LA  + ++  
Sbjct: 127 ELQPNNLKALMALAVSYTNTSH 148

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 18/145 (12%)

Query: 167 EEATRLYLKALEVFPEFAAAHSNLAS--------VLQQQGKLTDALLHYKEAIRIQPSFA 218
           E A        E + +  A    +A           Q Q  ++ +   Y           
Sbjct: 6   ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW 65

Query: 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIR----- 273
                 G    +  D+   +     AI  +PG A+A   L     ++      I      
Sbjct: 66  PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125

Query: 274 TDLNSAYFWLLLLDAHSNLASIHKD 298
            +L         L A   LA  + +
Sbjct: 126 LELQPNN-----LKALMALAVSYTN 145

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 4/79 (5%), Positives = 12/79 (15%), Gaps = 8/79 (10%)

Query: 197 QGKLTDALLHYKEAIRIQPSFADAYSNMGNT--------LKEMQDIQGALQCYSRAIQIN 248
             +   A    +            +  M            +    +  + + Y    +  
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 249 PGFADAHSNLASIHKDSGK 267
                            G 
Sbjct: 62  FKDWPGAFEEGLKRLKEGD 80

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  179 bits (456), Expect = 2e-49
 Identities = 35/285 (12%), Positives = 71/285 (24%), Gaps = 38/285 (13%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
            +    +A  L P    A  +     +                   P    A  +     
Sbjct: 193 LLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 252

Query: 50  KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE--I 107
           +    +  L  P       L P                  +    S  G      V+  +
Sbjct: 253 QALETVQRL-LPVLCQAHGLTP--------------QQVVAIASNSG-GKQALETVQRLL 296

Query: 108 FCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKRE 162
                   L+P      +        L  V         A  L P    ++ +    K+ 
Sbjct: 297 PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 356

Query: 163 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS 222
              ++    +  +A  + PE   A ++     Q    +   L    +A  + P    A +
Sbjct: 357 LETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIA 416

Query: 223 NMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           +     + ++ +Q  L    +A  + P    A ++          
Sbjct: 417 SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALES 461

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  160 bits (406), Expect = 1e-42
 Identities = 29/281 (10%), Positives = 67/281 (23%), Gaps = 60/281 (21%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
              +    +A  L P    A  +     +                   P    A  +   
Sbjct: 157 QALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGG 216

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
             +                R L                                ++    
Sbjct: 217 GKQALE----------TVQRLLP------------VL----------------CQA---- 234

Query: 108 FCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
             + L+P      +        L  V         A  L P    ++ + +  K+    +
Sbjct: 235 --HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETV 292

Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
           +    +  +A  + P+   A ++     Q    +   L    +A  + P    A ++   
Sbjct: 293 QRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG 352

Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
             + ++ +Q  L    +A  + P    A ++     +    
Sbjct: 353 GKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALET 393

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  159 bits (405), Expect = 2e-42
 Identities = 29/279 (10%), Positives = 66/279 (23%), Gaps = 60/279 (21%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
            +    +A  L P    A  +     +                   P    A  +     
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184

Query: 50  KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
           +    +  L        +                                          
Sbjct: 185 QALETVQRLLP---VLCQAHG--------------------------------------- 202

Query: 110 YALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEE 168
             L+P      +        L  V         A  L P    ++ +    K+    ++ 
Sbjct: 203 --LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 260

Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
              +  +A  + P+   A ++ +   Q    +   L    +A  + P    A ++ G   
Sbjct: 261 LLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320

Query: 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           + ++ +Q  L    +A  + P    A ++     +    
Sbjct: 321 QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET 359

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  156 bits (397), Expect = 2e-41
 Identities = 28/279 (10%), Positives = 65/279 (23%), Gaps = 60/279 (21%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
            +    +A  L P    A  +     +                   P    A  +     
Sbjct: 91  LLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGK 150

Query: 50  KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
           +    +  L        +                                          
Sbjct: 151 QALETVQALLP---VLCQAHG--------------------------------------- 168

Query: 110 YALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEE 168
             L+P+     +        L  V         A  L P    ++ +    K+    ++ 
Sbjct: 169 --LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 226

Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
              +  +A  + P+   A ++     Q    +   L    +A  + P    A ++     
Sbjct: 227 LLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGK 286

Query: 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           + ++ +Q  L    +A  + P    A ++     +    
Sbjct: 287 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET 325

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  154 bits (391), Expect = 1e-40
 Identities = 27/275 (9%), Positives = 65/275 (23%), Gaps = 60/275 (21%)

Query: 9   YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
               + L P    A  +     +                   P    A  +     +   
Sbjct: 61  TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120

Query: 54  QINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALS 113
            +  L        +                                            L+
Sbjct: 121 TVQRLLP---VLCQAHG-----------------------------------------LT 136

Query: 114 PDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRL 172
           P+     +        +  V         A  L P    ++ +    K+    ++    +
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196

Query: 173 YLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ 232
             +A  + P+   A ++     Q    +   L    +A  + P    A ++ G   + ++
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 256

Query: 233 DIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
            +Q  L    +A  + P    A ++ +   +    
Sbjct: 257 TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALET 291

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  152 bits (387), Expect = 5e-40
 Identities = 31/271 (11%), Positives = 63/271 (23%), Gaps = 61/271 (22%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
            +    +A  L P    A  + +   +                   P    A  +     
Sbjct: 261 LLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320

Query: 50  KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
           +                R L                                ++      
Sbjct: 321 QALE----------TVQRLLP------------VL----------------CQA------ 336

Query: 110 YALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEE 168
           + L+P      +        L  V         A  L P    ++ +    K+    ++ 
Sbjct: 337 HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQR 396

Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
              +  +A  + PE   A ++     Q    +   L    +A  + P    A ++ G   
Sbjct: 397 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGR 456

Query: 229 KEMQDIQGALQCYSRAIQINP-GFADAHSNL 258
             ++ I   L     A+         A + L
Sbjct: 457 PALESIVAQLSRPDPALAALTNDHLVALACL 487

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  141 bits (356), Expect = 5e-36
 Identities = 29/283 (10%), Positives = 66/283 (23%), Gaps = 60/283 (21%)

Query: 1   LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKG---------------QPNFPDAYCNL 45
           L+ +A +     ++L                 +                 P    A  + 
Sbjct: 19  LLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASH 78

Query: 46  ANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRV 105
               +    +  L        +                                      
Sbjct: 79  DGGKQALETVQRLLP---VLCQAHG----------------------------------- 100

Query: 106 EIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
                 L+P      +        L  V         A  L P    ++ +    K+   
Sbjct: 101 ------LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 154

Query: 165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224
            ++    +  +A  + PE   A ++     Q    +   L    +A  + P    A ++ 
Sbjct: 155 TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 214

Query: 225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           G   + ++ +Q  L    +A  + P    A ++     +    
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET 257

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  116 bits (293), Expect = 9e-28
 Identities = 21/242 (8%), Positives = 51/242 (21%), Gaps = 61/242 (25%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           +   +    +A  L P    A  +     +                   P    A  +  
Sbjct: 292 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD 351

Query: 47  NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
              +    +  L        +                                       
Sbjct: 352 GGKQALETVQRLLP---VLCQAHG------------------------------------ 372

Query: 107 IFCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
                L+P+     +        +  V         A  L P    ++ +    K+    
Sbjct: 373 -----LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALET 427

Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS-FADAYSNM 224
           ++    +  +A  + P+   A ++          +   L     A+    +    A + +
Sbjct: 428 VQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACL 487

Query: 225 GN 226
           G 
Sbjct: 488 GG 489

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 10/88 (11%), Positives = 23/88 (26%), Gaps = 4/88 (4%)

Query: 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE--MQDIQGALQ 239
           E    H   +     +  LT A       +++        +  G       +   + AL 
Sbjct: 2   EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL- 60

Query: 240 CYSRAIQINPGFADAHSNLASIHKDSGK 267
                + + P    A ++     +    
Sbjct: 61  -TGAPLNLTPEQVVAIASHDGGKQALET 87

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  168 bits (429), Expect = 1e-48
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 12/148 (8%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANI-----------KREQGYIEEATRLYLKALEV 179
            V+ A E   T +   P +      L+             +R +GY+E+A  +   A  V
Sbjct: 54  LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113

Query: 180 FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239
            P +A  H     V    G+   A    K+A+ ++    +  S +      M  +  AL 
Sbjct: 114 NPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALA 172

Query: 240 CYSRAIQINPGFADAHSNLASIHKDSGK 267
            Y++A++  P   D     AS     GK
Sbjct: 173 QYAKALEQAPKDLDLRVRYASALLLKGK 200

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  156 bits (396), Expect = 5e-44
 Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 22/184 (11%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
           +   A   +  AL+  P   ++L  LA  + + G +  A       +   P +   +  L
Sbjct: 20  RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79

Query: 191 ASVL-----------QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239
           +              + +G L  AL   K+A R+ P +A  +   G     + +   A  
Sbjct: 80  SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA 139

Query: 240 CYSRAIQINPGFADAHSNLASIHKDSGK----RGFFIRT-DLNSAYFWLLLLDAHSNLAS 294
              +A+ +     +  S LA ++   G+       + +  +           D     AS
Sbjct: 140 SLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL-----DLRVRYAS 193

Query: 295 IHKD 298
               
Sbjct: 194 ALLL 197

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  139 bits (352), Expect = 8e-38
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 11/132 (8%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
            T   +   L       G  + A  L+ +AL+  P+   A   LA    + G +  AL +
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQG-----------ALQCYSRAIQINPGFADAH 255
            K  +   P +   Y  +      +                AL     A ++NP +A  H
Sbjct: 62  GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121

Query: 256 SNLASIHKDSGK 267
                ++   G+
Sbjct: 122 LQRGLVYALLGE 133

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  132 bits (334), Expect = 2e-35
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 1/116 (0%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
           +A      A R+ P +A        +    G  ++A     +AL +        S LA +
Sbjct: 102 QALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAEL 160

Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
               G+L +AL  Y +A+   P   D      + L      + A +  +     + 
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  111 bits (281), Expect = 3e-28
 Identities = 15/129 (11%), Positives = 37/129 (28%), Gaps = 11/129 (8%)

Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
                    L   L   G+   AL  ++ A++  P   +A   +  T  ++  +  AL+ 
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 241 YSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLN------SAYFWLLLLD-----AH 289
               +   P +   +  L+  +    ++               S       ++      H
Sbjct: 62  GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121

Query: 290 SNLASIHKD 298
                ++  
Sbjct: 122 LQRGLVYAL 130

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 96.8 bits (242), Expect = 5e-23
 Identities = 37/209 (17%), Positives = 57/209 (27%), Gaps = 48/209 (22%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
            D A+  + RA++  P  P+A   LA    + G                P +   Y  L+
Sbjct: 21  YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80

Query: 47  NALKEKGQINVLHKPP----------YKYTRELAPGNRIRIGYVSSDFGNHPTSHL-MQS 95
            A     +     +             K    + P               +   HL    
Sbjct: 81  EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--------------RYAPLHLQRGL 126

Query: 96  VPGMHNKSRVE--IFCY--ALSPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCPTH 149
           V         +        AL+ +D       ++ L L    + EA   Y  AL   P  
Sbjct: 127 V--YALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALE 178
            D     A+    +G  EEA R       
Sbjct: 185 LDLRVRYASALLLKGKAEEAARAAALEHH 213

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  165 bits (421), Expect = 7e-48
 Identities = 22/137 (16%), Positives = 45/137 (32%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
           + S+A               D   +L     + G ++  T L  ++L   P+     + L
Sbjct: 23  RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVL 82

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
                Q  K   A+    +     P   +    +G  L  +     A+  +  A+ + P 
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142

Query: 251 FADAHSNLASIHKDSGK 267
               H  +A  ++  G+
Sbjct: 143 EGKVHRAIAFSYEQMGR 159

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  159 bits (404), Expect = 2e-45
 Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 3/133 (2%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
            V    E    +L   P +      L     +    + A  L +K  E  P        L
Sbjct: 57  AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL 116

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
              L   G+  +A+  +K A+ ++P+    +  +  + ++M   + AL  + +A +++  
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE- 175

Query: 251 FADAHSNLASIHK 263
              A   LA + +
Sbjct: 176 --GASVELALVPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  145 bits (369), Expect = 1e-40
 Identities = 14/121 (11%), Positives = 35/121 (28%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
                   +      + G   +A  L  +  +          +L     + G +      
Sbjct: 5   DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64

Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
            + ++   P      + +G T  ++Q    A+    +  + NP   +    L     + G
Sbjct: 65  LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124

Query: 267 K 267
           +
Sbjct: 125 R 125

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 78.6 bits (195), Expect = 5e-17
 Identities = 27/185 (14%), Positives = 47/185 (25%), Gaps = 47/185 (25%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
              A+    +  +      D   +L  A  + G                P+       L 
Sbjct: 24  YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83

Query: 47  NALKEKGQIN--VLHKPPYKYTRELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGMHN 101
               +  + +  V          E  P N   R R+G    + G    +           
Sbjct: 84  LTYVQVQKYDLAVPL---LIKVAEANPINFNVRFRLGVALDNLGRFDEA----------- 129

Query: 102 KSRVEIFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNL 156
                I  +     L P++G     I      + +  EA   +  A  L    +     L
Sbjct: 130 -----IDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS---VEL 181

Query: 157 ANIKR 161
           A + R
Sbjct: 182 ALVPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 50.1 bits (121), Expect = 3e-07
 Identities = 6/59 (10%), Positives = 15/59 (25%), Gaps = 15/59 (25%)

Query: 13 IELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQIN 56
          +         Y +   +  + G+                   D   +L  A  + G ++
Sbjct: 1  MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVD 59

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  175 bits (444), Expect = 4e-47
 Identities = 30/290 (10%), Positives = 79/290 (27%), Gaps = 75/290 (25%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
           +         ++  P     +  +        +               P F  A+   A+
Sbjct: 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH 415

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
           +   +G+                                             H+++   I
Sbjct: 416 SFAIEGE---------------------------------------------HDQA---I 427

Query: 108 FCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKRE 162
             Y     L       + ++    + +  +  A E   ++  L       LN L  +   
Sbjct: 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN 487

Query: 163 QGYIEEATRLYLKALEVF-------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
           +  ++ A   +  AL +          +AA  +NL    ++      A+    + + +  
Sbjct: 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547

Query: 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265
           + A+ ++ +       +    A+     ++ I+P    A   L    +++
Sbjct: 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEEN 597

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  172 bits (437), Expect = 3e-46
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 65/302 (21%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
             + Y  +I       D     A+ L  + +               P   D Y     +L
Sbjct: 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349

Query: 50  KEKGQINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSH----LMQSVPGMHNKS 103
            E G+ N L+          +  P                  +     +        +++
Sbjct: 350 HESGEKNKLY---LISNDLVDRHP--------------EKAVTWLAVGIYYLCVNKISEA 392

Query: 104 RVEIFCY----ALSPDD-------GTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADS 152
                 +     + P           +F+         +  +A   Y TA RL       
Sbjct: 393 ---RRYFSKSSTMDPQFGPAWIGFAHSFAI------EGEHDQAISAYTTAARLFQGTHLP 443

Query: 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
              L     + G I  A      +  +F       + L  V   +  +  A+ H++ A+ 
Sbjct: 444 YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503

Query: 213 I-------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265
           +       +  +A  ++N+G+  ++++    A+   ++ + ++   A+ H+ +A ++   
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563

Query: 266 GK 267
             
Sbjct: 564 KI 565

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  157 bits (399), Expect = 4e-41
 Identities = 37/270 (13%), Positives = 82/270 (30%), Gaps = 35/270 (12%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
           D A + Y+ A+ +     +A+  L +               +L  A +E   +  L    
Sbjct: 217 DRAKECYKEALMVDAKCYEAFDQLVSN--------------HLLTADEEWDLV--LKLNY 260

Query: 63  YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY--ALSPDDGTTF 120
             Y++E A   R       +                 H         Y  +++  + ++ 
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTS--------------HEDELRRAEDYLSSINGLEKSSD 306

Query: 121 SYIISVLLLIQ---VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKAL 177
             +     L       +        L + P + D          E G   +   +    +
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366

Query: 178 EVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA 237
           +  PE A     +        K+++A  ++ ++  + P F  A+    ++     +   A
Sbjct: 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426

Query: 238 LQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           +  Y+ A ++  G    +  L   H   G 
Sbjct: 427 ISAYTTAARLFQGTHLPYLFLGMQHMQLGN 456

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  141 bits (357), Expect = 1e-35
 Identities = 33/257 (12%), Positives = 72/257 (28%), Gaps = 12/257 (4%)

Query: 14  ELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGN 73
           E  P   D        +++ G                     +   K  YK    +    
Sbjct: 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD-RAKECYKEALMVDAKC 233

Query: 74  RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI---ISVLLLI 130
                    +  +   S+ + +     +      +      D     S     ++     
Sbjct: 234 --------YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
                 E Y +++      +D L   A+    +    +   +  K LE+ P     +   
Sbjct: 286 DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
            + L + G+     L   + +   P  A  +  +G     +  I  A + +S++  ++P 
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405

Query: 251 FADAHSNLASIHKDSGK 267
           F  A    A      G+
Sbjct: 406 FGPAWIGFAHSFAIEGE 422

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  139 bits (351), Expect = 8e-35
 Identities = 42/252 (16%), Positives = 72/252 (28%), Gaps = 67/252 (26%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           I  A   + ++  + P F  A+   A++   +G+                     Y  L 
Sbjct: 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448

Query: 47  NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
               + G I             LA                    +L  S           
Sbjct: 449 MQHMQLGNI------------LLA------------------NEYLQSS----------- 467

Query: 107 IFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLC-------PTHADSLNNLAN 158
              YAL   D    + +  V      +  A   +  AL L           A +  NL +
Sbjct: 468 ---YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524

Query: 159 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA 218
             R+    + A     + L +    A  H+ +A V   +     A+ H  E++ I P+  
Sbjct: 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584

Query: 219 DAYSNMGNTLKE 230
            A   +   L+E
Sbjct: 585 MASDLLKRALEE 596

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  173 bits (441), Expect = 4e-47
 Identities = 44/302 (14%), Positives = 82/302 (27%), Gaps = 87/302 (28%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
              +        L+ N   A C        K                 P  P++Y  LA 
Sbjct: 226 HSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLAL 284

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
            L +K               +                                       
Sbjct: 285 TLADKENS------------QEF------------------------------------F 296

Query: 108 FCY----ALSPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADSLNNLANIKR 161
             +     L+P+   T+ Y    +  I      A+E +  A  L P +      LA +  
Sbjct: 297 KFFQKAVDLNPEYPPTY-YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355

Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
           +QG   E+   + +    FP      +  A +L  +G    A+  Y  A R++      +
Sbjct: 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415

Query: 222 SNMGNTL----------------KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265
             +G  +                 + +    A++  ++A +++P    A   LA +    
Sbjct: 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475

Query: 266 GK 267
            K
Sbjct: 476 EK 477

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  170 bits (433), Expect = 5e-46
 Identities = 42/280 (15%), Positives = 85/280 (30%), Gaps = 33/280 (11%)

Query: 2   IDLAIDTYRRAIELQP-----NFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN 56
           +      +   +E+       N+  AY  L++AL+     +  D    +AN L  K    
Sbjct: 167 LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL--YSATDEGYLVANDLLTKSTDM 224

Query: 57  VLH-KPPYKYTRELAPGNRI---RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY-- 110
                        L     +     G       N   +                      
Sbjct: 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA----------------QVLLQE 268

Query: 111 --ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE 167
              L P    ++ ++   L       E  + +  A+ L P +  +  +   +       +
Sbjct: 269 SINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK 327

Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
            A   + KA  + PE    +  LA +L +QGK T++   + E     P+  +  +     
Sbjct: 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI 387

Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           L +  D   A++ Y  A ++       H  +  +   +  
Sbjct: 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  165 bits (420), Expect = 3e-44
 Identities = 45/295 (15%), Positives = 90/295 (30%), Gaps = 39/295 (13%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
            + AI  Y+ AIEL PN P  Y N++      G                P+   A    A
Sbjct: 41  FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100

Query: 47  NALKEKGQIN--------VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPG 98
           +A +  G           +     +          R            + +    +    
Sbjct: 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160

Query: 99  MHNKSRV----EIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLN 154
           + + + +     IF   L      T S             A    + AL+   +  D   
Sbjct: 161 LPSNTSLASFFGIFDSHLEVSSVNTSSNY---------DTAYALLSDALQRLYSATDEGY 211

Query: 155 NLAN--IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
            +AN  + +                 +    A A          +  L DA +  +E+I 
Sbjct: 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271

Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           + P+  ++Y  +  TL + ++ Q   + + +A+ +NP +   + +   ++     
Sbjct: 272 LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  162 bits (412), Expect = 3e-43
 Identities = 36/294 (12%), Positives = 81/294 (27%), Gaps = 85/294 (28%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           +  A    + +I L P  P++Y  LA  L +K                 P +P  Y +  
Sbjct: 259 LLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317

Query: 47  NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
                                                                +  +   
Sbjct: 318 QMYFIL---------------------------------------------QDYKNA--- 329

Query: 107 IFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKR 161
              +    +L+P++   +  +  +L    + +E+E  +N      PT  +     A I  
Sbjct: 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389

Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ----------------QGKLTDALL 205
           ++G  + A + Y  A  +       H  +  ++ +                + K   A+ 
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449

Query: 206 HYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
              +A  + P    A   +     +M+ I  A++ +  +  +     +      
Sbjct: 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  156 bits (396), Expect = 5e-41
 Identities = 37/289 (12%), Positives = 90/289 (31%), Gaps = 29/289 (10%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCN--LANALKEKGQPNFPDA----YCNLANALKEKG--- 53
             A+      + L  +F  A     L   L ++      +         +  L       
Sbjct: 110 TDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168

Query: 54  ----------QINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKS 103
                     +++ ++      T      + ++  Y ++D G    + L+     M++  
Sbjct: 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228

Query: 104 RVEIFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLAN 158
              +        L  +      Y      L   + +A+     ++ L P   +S   LA 
Sbjct: 229 ---LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLAL 284

Query: 159 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA 218
              ++   +E  + + KA+++ PE+   + +   +        +A   +++A  + P   
Sbjct: 285 TLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344

Query: 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
             Y  +   L +      +   ++      P   +  +  A I  D G 
Sbjct: 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD 393

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  151 bits (383), Expect = 2e-39
 Identities = 41/297 (13%), Positives = 84/297 (28%), Gaps = 85/297 (28%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
                 +++A++L P +P  Y +                         P     Y  LA 
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLAC 352

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
            L ++G          K+T   A                              N++    
Sbjct: 353 LLYKQG----------KFTESEA----------------------------FFNET-KLK 373

Query: 108 FCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANI------- 159
           F     P      ++   +L        A + Y+ A RL          +  +       
Sbjct: 374 F-----PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428

Query: 160 ---------KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEA 210
                    + ++     A +L  KA E+ P    A   LA +  Q  K+ +A+  ++++
Sbjct: 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488

Query: 211 IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
             +  +  +       T  E   IQ       + ++ +P  +       + ++  G 
Sbjct: 489 AILARTMDEKLQAT--TFAEAAKIQ-------KRLRADPIISAKMELTLARYRAKGM 536

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  123 bits (310), Expect = 8e-30
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 5/128 (3%)

Query: 134 EAEECYNTALRLCP----THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN 189
             E        L P     +A  L N  N         EA + Y  A+E+ P     +SN
Sbjct: 5   NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64

Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
           +++     G L   +    +A+ I+P  + A     +  + + +   A+   S  + +N 
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNG 123

Query: 250 GFADAHSN 257
            F  A   
Sbjct: 124 DFDGASIE 131

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  117 bits (294), Expect = 8e-28
 Identities = 33/247 (13%), Positives = 64/247 (25%), Gaps = 55/247 (22%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
              A + +++A  L P     Y  LA  L ++G+               P  P+     A
Sbjct: 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385

Query: 47  NALKEKGQIN--VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSR 104
             L ++G  +  +     Y   + L                     H             
Sbjct: 386 EILTDRGDFDTAIKQ---YDIAKRLEE--------------VQEKIH--------VGIG- 419

Query: 105 VEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
                   +       S   + L   + + A +    A  L P    +   LA +K +  
Sbjct: 420 ---PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476

Query: 165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224
            I+EA  L+  +  +                +  K        ++ +R  P  +      
Sbjct: 477 KIDEAIELFEDSAILARTMDEKLQATT--FAEAAK-------IQKRLRADPIISAKMELT 527

Query: 225 GNTLKEM 231
               +  
Sbjct: 528 LARYRAK 534

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  108 bits (271), Expect = 6e-25
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 164 GYIEEATRLYLKALEVFPE----FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD 219
           G          +   + P     +A    N  +         +A+ +Y+ AI + P+   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
            YSN+        D++  ++  ++A++I P  + A    AS ++  G 
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 92.5 bits (230), Expect = 8e-20
 Identities = 24/219 (10%), Positives = 48/219 (21%), Gaps = 61/219 (27%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
              +   +       P  P+     A  L ++G                      +  + 
Sbjct: 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419

Query: 47  NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
             + +   +                           D      +                
Sbjct: 420 PLIGKATILARQSSQDPTQ----------------LDEEKFNAA---------------- 447

Query: 107 IFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKR 161
           I        L P        +  + L + ++ EA E +  +  L  T  + L        
Sbjct: 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT---- 503

Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL 200
                 EA +   K L   P  +A      +  + +G L
Sbjct: 504 ----FAEAAK-IQKRLRADPIISAKMELTLARYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.8 bits (205), Expect = 9e-17
 Identities = 36/319 (11%), Positives = 65/319 (20%), Gaps = 118/319 (36%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
                   +   L P+   AY                    N  N               
Sbjct: 4   MNGEPDIAQLKGLSPSQRQAY---------------AVQLKNRGNHFFTAKNF------- 41

Query: 63  YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGT 118
                  A                                    I  Y     L P++  
Sbjct: 42  -----NEA------------------------------------IKYYQYAIELDPNEPV 60

Query: 119 TFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA------- 169
            +   IS   +    + +  E    AL + P H+ +L   A+     G   +A       
Sbjct: 61  FY-SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119

Query: 170 ----------------TRLYLKALEVFPEFAAA-HSNLASVLQQQGKLTDALLHYKEAIR 212
                             L  +A++V  E  +      + VL     L      +   + 
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179

Query: 213 IQPS-----FADAYSNMGNTLKEM-------------------QDIQGALQCYSRAIQIN 248
           +        +  AY+ + + L+ +                         L   +    + 
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR 239

Query: 249 PGFADAHSNLASIHKDSGK 267
              A A       H     
Sbjct: 240 ENAALALCYTGIFHFLKNN 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  161 bits (409), Expect = 2e-45
 Identities = 39/271 (14%), Positives = 66/271 (24%), Gaps = 70/271 (25%)

Query: 17  PNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKP 61
            +  D      N   +  Q                +      N A A  EKG        
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKG-------- 52

Query: 62  PYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDG 117
             +Y  E A                                    I           +  
Sbjct: 53  --EY--ETA------------------------------------ISTLNDAVEQGREMR 72

Query: 118 TTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA 176
             +  I      I             +        + +  A+I  +    E+  +     
Sbjct: 73  ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRNAEKELKKAEAE 131

Query: 177 LEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQG 236
             V PE A            +    +A+  Y E I+  P  A  YSN    L ++     
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE 191

Query: 237 ALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           A+   ++AI+ +P F  A+   A+      +
Sbjct: 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  108 bits (272), Expect = 1e-26
 Identities = 34/240 (14%), Positives = 60/240 (25%), Gaps = 43/240 (17%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
           + AI T   A+E        Y  ++             ++  + NA  + G         
Sbjct: 55  ETAISTLNDAVEQGREMRADYKVISK------------SFARIGNAYHKLG--------- 93

Query: 63  YKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDD 116
               +  E                    T H    +      +  E+        ++P+ 
Sbjct: 94  -DLKKTIEYYQ--------------KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEK 138

Query: 117 GTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLK 175
                              A + Y   ++  P  A   +N A    +     EA     K
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198

Query: 176 ALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ 235
           A+E  P F  A+   A+      +   AL     A        +  S         +  Q
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 8/68 (11%), Positives = 13/68 (19%), Gaps = 15/68 (22%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
            +  +        + P   +           K                 P     Y N A
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180

Query: 47  NALKEKGQ 54
            AL +   
Sbjct: 181 AALAKLMS 188

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.1 bits (144), Expect = 7e-10
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 16/67 (23%)

Query: 3  DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
          D AI+ Y +A EL  +      N A A  EKG+                     Y  ++ 
Sbjct: 22 DEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80

Query: 48 ALKEKGQ 54
          +    G 
Sbjct: 81 SFARIGN 87

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  160 bits (407), Expect = 4e-45
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 2/140 (1%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV--FPEFAAAHS 188
           +   A+E Y  AL     +A  LNN      EQ   EEA +  L+A +   +PE +    
Sbjct: 86  EPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE 145

Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
           NL  V  Q  K   A  ++++++R+  +       M + L + ++   A Q Y    Q  
Sbjct: 146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205

Query: 249 PGFADAHSNLASIHKDSGKR 268
              A +      + K    R
Sbjct: 206 GQNARSLLLGIRLAKVFEDR 225

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  142 bits (360), Expect = 1e-38
 Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 12/181 (6%)

Query: 125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA 184
           S L+       ++      +      D+   L     ++G  E+A     KALE+ P  A
Sbjct: 12  SGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA 71

Query: 185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA 244
            AH+ LA V Q + +   A   Y++A+      A   +N G  L E +  + A Q    A
Sbjct: 72  DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA 131

Query: 245 IQ--INPGFADAHSNLASIHKDSGK----RGFFIRT-DLNSAYFWLLLLDAHSNLASIHK 297
            Q  + P  +    NL  +     K    + +F ++  LN              +A +  
Sbjct: 132 SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP-----SVALEMADLLY 186

Query: 298 D 298
            
Sbjct: 187 K 187

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  137 bits (346), Expect = 1e-36
 Identities = 36/262 (13%), Positives = 69/262 (26%), Gaps = 40/262 (15%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYK 64
                 +  + +    DAY  L     ++G      A   L  AL+          P   
Sbjct: 22  GDQNPLKTDKGRDEARDAYIQLGLGYLQRGN--TEQAKVPLRKALE--------IDPSS- 70

Query: 65  YTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGTTF 120
                A         V         +                   Y    A    +    
Sbjct: 71  ---ADAHAAL---AVVFQTEMEPKLA----------------DEEYRKALASDSRNARVL 108

Query: 121 SYIISVLL-LIQVSEAEECYNTALR--LCPTHADSLNNLANIKREQGYIEEATRLYLKAL 177
           +     L    +  EA +    A +  L P  +    NL  +  +     +A   + K+L
Sbjct: 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168

Query: 178 EVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA 237
            +     +    +A +L ++ +   A  +Y    +     A +        K  +D   A
Sbjct: 169 RLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228

Query: 238 LQCYSRAIQINPGFADAHSNLA 259
                +  ++ PG  +     A
Sbjct: 229 ASYGLQLKRLYPGSLEYQEFQA 250

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  125 bits (317), Expect = 9e-33
 Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 15/161 (9%)

Query: 145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL 204
           +  +H    ++   + R     ++     LK  +   E   A+  L     Q+G    A 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57

Query: 205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264
           +  ++A+ I PS ADA++ +    +   + + A + Y +A+  +   A   +N      +
Sbjct: 58  VPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117

Query: 265 SGK----RGFF---IRTDLNSAYFWLLLLDAHSNLASIHKD 298
             +            +  L              NL  +   
Sbjct: 118 QKRYEEAYQRLLEASQDTLYPERS-----RVFENLGLVSLQ 153

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  108 bits (271), Expect = 2e-26
 Identities = 29/218 (13%), Positives = 58/218 (26%), Gaps = 60/218 (27%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
            LA + YR+A+           N    L E+    + +AY  L  A           +  
Sbjct: 88  KLADEEYRKALASDSRNARVLNNYGGFLYEQK--RYEEAYQRLLEAS----------QDT 135

Query: 63  YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY 122
               R     N   +G VS                                         
Sbjct: 136 LYPERSRVFEN---LGLVSLQMK------------------------------------- 155

Query: 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
                   + ++A+E +  +LRL          +A++  ++     A + Y    +   +
Sbjct: 156 --------KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA 220
            A +      + +       A  +  +  R+ P   + 
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  106 bits (268), Expect = 4e-26
 Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 46/217 (21%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
            + A    R+A+E+ P+  DA+  LA   + + +                       N  
Sbjct: 53  TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112

Query: 47  NALKEKGQ----INVLHK---PPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGM 99
             L E+ +       L +         R     N   +G VS        +         
Sbjct: 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN---LGLVSLQMKKPAQA--------- 160

Query: 100 HNKSRVEIFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLN 154
                     +     L+ +  +    +  +L    +   A + Y+   +    +A SL 
Sbjct: 161 -------KEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLL 213

Query: 155 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
               + +     + A    L+   ++P         A
Sbjct: 214 LGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  163 bits (415), Expect = 4e-45
 Identities = 34/298 (11%), Positives = 82/298 (27%), Gaps = 63/298 (21%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
             A+  +  A++  P+   AY   A      G+                +F  A     +
Sbjct: 20  ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79

Query: 48  ALKEKGQIN--VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRV 105
            L ++G+++        +K   +  P              +       +S     ++ + 
Sbjct: 80  LLLKQGKLDEAEDD---FKKVLKSNP--------------SEQEEKEAESQLVKADEMQR 122

Query: 106 EIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
                  + D                 + A    +  L +C   A+     A    ++G 
Sbjct: 123 LRSQALDAFDGA-------------DYTAAITFLDKILEVCVWDAELRELRAECFIKEGE 169

Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM- 224
             +A      A ++  +   A   ++++  Q G    +L   +E +++       +++  
Sbjct: 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229

Query: 225 -----------GNTLKEMQDIQGALQCYSRAIQINPGFAD----AHSNLASIHKDSGK 267
                         L        A   Y   ++  P  A+    +   +        K
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  151 bits (384), Expect = 1e-40
 Identities = 38/294 (12%), Positives = 81/294 (27%), Gaps = 53/294 (18%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN-VLHK 60
           +D A D +++ ++  P+  +     +  +K     +      + A    +       +  
Sbjct: 87  LDEAEDDFKKVLKSNPSEQEEKEAESQLVK----ADEMQRLRSQALDAFDGADYTAAI-- 140

Query: 61  PPYKYTR--ELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----A 111
                 +  E+   +   R          G    +                I        
Sbjct: 141 --TFLDKILEVCVWDAELRELRAECFIKEGEPRKA----------------ISDLKAASK 182

Query: 112 LSPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADSLNNLANIKR-------- 161
           L  D+   F Y IS L         +       L+L   H     +   +K+        
Sbjct: 183 LKSDNTEAF-YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241

Query: 162 ----EQGYIEEATRLYLKALEVFPEFAA----AHSNLASVLQQQGKLTDALLHYKEAIRI 213
                 G   +AT  Y   ++  P  A     +   +     +  K  +A+    E +++
Sbjct: 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301

Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           +P   +A  +        +    A+Q Y  A + N         L    +   +
Sbjct: 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  132 bits (334), Expect = 5e-34
 Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 15/152 (9%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
           Q+++A   ++ A+   P +  +    A +    G  + A     K + +  +F AA    
Sbjct: 18  QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR 77

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK---------------EMQDIQ 235
             +L +QGKL +A   +K+ ++  PS  +        +K               +  D  
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 236 GALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
            A+    + +++    A+     A      G+
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGE 169

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  126 bits (318), Expect = 6e-32
 Identities = 21/124 (16%), Positives = 45/124 (36%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
            +    L       G + +A   +  A++  P+   A+   A+V    GK   AL    +
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269
            I ++  F  A    G+ L +   +  A   + + ++ NP   +     + + K    + 
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122

Query: 270 FFIR 273
              +
Sbjct: 123 LRSQ 126

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  164 bits (417), Expect = 5e-44
 Identities = 33/279 (11%), Positives = 86/279 (30%), Gaps = 48/279 (17%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
           +  +D      +L+     +  +       K   +   A+ ++  A++   ++N      
Sbjct: 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN--DPLGAHEDIKKAIELFPRVNSYIY-- 275

Query: 63  YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGT 118
                         +  + +D  +                       +     L  ++ +
Sbjct: 276 --------------MALIMADRNDSTEY----------------YNYFDKALKLDSNNSS 305

Query: 119 TFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKAL 177
            + +   +  ++    +A + ++ A  L P +      LA +   +   ++   L+ +A 
Sbjct: 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK 365

Query: 178 EVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL--------- 228
             FPE     +  A +L  +     AL  Y  AI ++      Y  +   +         
Sbjct: 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425

Query: 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
             +++   A     +A +++P    A   LA +      
Sbjct: 426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  159 bits (403), Expect = 4e-42
 Identities = 32/286 (11%), Positives = 81/286 (28%), Gaps = 78/286 (27%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
             A +  ++AIEL P   ++Y  +A  + ++                  N    Y +   
Sbjct: 254 LGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
                               + A                                     
Sbjct: 313 MNFILQNY------------DQA------------------------------------G 324

Query: 108 FCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKRE 162
             +     L P++   +  +  +     +  + E  ++ A R  P   +  N  A I  +
Sbjct: 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384

Query: 163 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ---------GKLTDALLHYKEAIRI 213
           +   ++A + Y  A+E+  +    +  +A ++ +              +A    ++A ++
Sbjct: 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444

Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
            P    A   +     + +DI  A+  +  +  +     +    + 
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  144 bits (365), Expect = 4e-37
 Identities = 37/299 (12%), Positives = 90/299 (30%), Gaps = 36/299 (12%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
           D AI  Y  A+EL+ + P  Y NL+      G                P++       A+
Sbjct: 23  DDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81

Query: 48  ALKEKGQ-------INVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMH 100
           A +  G+       ++VL          + P     +   +          +  +     
Sbjct: 82  ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPT 141

Query: 101 NKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLA--- 157
             S           ++  + + + S   + +       Y+ +        + L+NL    
Sbjct: 142 ELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS 201

Query: 158 ---------NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208
                    +  +     EE      +  ++  + A +  +       +     A    K
Sbjct: 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK 261

Query: 209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           +AI + P   ++Y  M   + +  D       + +A++++   +  + +   ++     
Sbjct: 262 KAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  143 bits (363), Expect = 8e-37
 Identities = 28/265 (10%), Positives = 65/265 (24%), Gaps = 8/265 (3%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQ-PNFPDAYCNLANALKEKGQINVLHKPPY 63
                  A                  +E         ++  +          +  ++   
Sbjct: 129 KFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADK 188

Query: 64  KYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI 123
           +    L       +   S +  +       ++      +         L      +  + 
Sbjct: 189 ELMNGL-----SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243

Query: 124 ISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
                L      A E    A+ L P   +S   +A I  ++    E    + KAL++   
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN 302

Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYS 242
            ++ + +   +         A   + +A  + P     Y  +                +S
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362

Query: 243 RAIQINPGFADAHSNLASIHKDSGK 267
            A +  P   +  +  A I  D   
Sbjct: 363 EAKRKFPEAPEVPNFFAEILTDKND 387

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  102 bits (255), Expect = 5e-23
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 2/112 (1%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
             +A +L +  N        ++A + Y  ALE+  +    +SNL++     G L   +  
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEM 61

Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
             +A+ ++P ++       +  + +     A+   S  + +N  F DA    
Sbjct: 62  STKALELKPDYSKVLLRRASANEGLGKFADAMFDLS-VLSLNGDFNDASIEP 112

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  100 bits (252), Expect = 1e-22
 Identities = 30/254 (11%), Positives = 63/254 (24%), Gaps = 62/254 (24%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
               + + +A++L  N    Y +                         P     Y  LA 
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC 346

Query: 48  ALKEKGQIN--VLHKPPYKYTRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNK 102
               + + +        +   +   P           + +D  +   +            
Sbjct: 347 LAYRENKFDDCETL---FSEAKRKFPEAPEVPNFFAEILTDKNDFDKA------------ 391

Query: 103 SRVEIFCY----ALSPDDGTTFS----------YIISVLLLIQVSEAEECYNTALRLCPT 148
               +  Y     L       +            +     +    EA      A +L P 
Sbjct: 392 ----LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447

Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208
              +   LA +K +Q  I+EA  L+ ++ ++          +     +  K        +
Sbjct: 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT--FAEAAK-------VQ 498

Query: 209 EAIRIQPSFADAYS 222
           + IR  P  A    
Sbjct: 499 QRIRSDPVLAKKIQ 512

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 17/87 (19%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
            ++A A  +  +   +  K  DA+ +Y  A+ ++      YSN+      + D++  ++ 
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEM 61

Query: 241 YSRAIQINPGFADAHSNLASIHKDSGK 267
            ++A+++ P ++      AS ++  GK
Sbjct: 62  STKALELKPDYSKVLLRRASANEGLGK 88

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 93.3 bits (232), Expect = 4e-20
 Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 6/158 (3%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
           +A + YN AL L        +NL+      G +++   +  KALE+ P+++      AS 
Sbjct: 24  DAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82

Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYS----NMGNTLKEMQDIQGALQCYSRAIQINP 249
            +  GK  DA+      + +   F DA            + M  ++        A     
Sbjct: 83  NEGLGKFADAMFDLS-VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPT 141

Query: 250 GFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLD 287
             +   +      +++      + +        L   +
Sbjct: 142 ELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 89.8 bits (223), Expect = 5e-19
 Identities = 42/305 (13%), Positives = 80/305 (26%), Gaps = 74/305 (24%)

Query: 16  QPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHK 60
           +  +  A  +  N      +                + P  Y NL+      G       
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGD------ 54

Query: 61  PPYK-----YTR--ELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY 110
              K      T+  EL P      +R    +   G    +              + +   
Sbjct: 55  --LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADA-----------MFDLSVLSL 101

Query: 111 ALSPDDGTTFSYIISVLLLIQVSEAEE---CYNTALRLCPTHADSLNNLANIKR------ 161
               +D +    +   L    +S+ +E     +TA       +         K+      
Sbjct: 102 NGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161

Query: 162 -------EQGYIEEATRLYLKALEVFPEFAAAHSNLA------------SVLQQQGKLTD 202
                       E     Y ++ E   E     SNL             S  +      +
Sbjct: 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221

Query: 203 ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH 262
            L    E  +++   A +  + G       D  GA +   +AI++ P   +++  +A I 
Sbjct: 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIM 280

Query: 263 KDSGK 267
            D   
Sbjct: 281 ADRND 285

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 31/211 (14%), Positives = 56/211 (26%), Gaps = 46/211 (21%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
            D A   + +A EL P     Y  LA     + +               P  P+     A
Sbjct: 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379

Query: 47  NALKEKGQIN--VLHKPPYKYTR--ELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPG- 98
             L +K   +  +       Y    EL        + I  +         +  +++    
Sbjct: 380 EILTDKNDFDKALKQ-----YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434

Query: 99  --MHNKSRVEIFCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNN 155
             +  K         L P        +  + L    + EA   +  +  L  T  + L  
Sbjct: 435 TNLLEK------ASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488

Query: 156 LANIKREQGYIEEATRLYLKALEVFPEFAAA 186
           +     E   +++  R         P  A  
Sbjct: 489 ITF--AEAAKVQQRIRSD-------PVLAKK 510

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  154 bits (391), Expect = 1e-42
 Identities = 36/261 (13%), Positives = 66/261 (25%), Gaps = 62/261 (23%)

Query: 1   LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNL 45
           L  LA + + +A+ ++P+ P+ +  L   L + G                P +  A+ N 
Sbjct: 58  LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117

Query: 46  ANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRV 105
             AL   G+             +LA            D                      
Sbjct: 118 GIALYYGGRD------------KLA----------QDDLLAF------------------ 137

Query: 106 EIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIK---RE 162
               Y   P+D     ++      +   +A+E                N +        E
Sbjct: 138 ----YQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 193

Query: 163 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS 222
           Q  +E           +    +  +  L       G L  A   +K A+         + 
Sbjct: 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 253

Query: 223 NMGNTLKEMQDIQGALQCYSR 243
                L  +   Q  L    +
Sbjct: 254 YALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  138 bits (350), Expect = 5e-37
 Identities = 25/175 (14%), Positives = 52/175 (29%), Gaps = 5/175 (2%)

Query: 128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH 187
             + ++  E+   +        A  L     +    G    A   + +AL + P+     
Sbjct: 21  QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF 80

Query: 188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247
           + L   L Q G    A   +   + + P++  A+ N G  L      + A        Q 
Sbjct: 81  NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140

Query: 248 NPGFADAHSNLASIHKDSGKRG----FFIRTDLNSAYFWLLLLDAHSNLASIHKD 298
           +P        L    +   ++          + +    W   +     L +I + 
Sbjct: 141 DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQ 194

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  126 bits (318), Expect = 1e-32
 Identities = 16/114 (14%), Positives = 41/114 (35%)

Query: 154 NNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI 213
             L    +++  +    ++         E A        +    G    A   + +A+ I
Sbjct: 13  VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI 72

Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           +P   + ++ +G  L +  +   A + +   ++++P +  AH N        G+
Sbjct: 73  RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 126

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  122 bits (309), Expect = 2e-31
 Identities = 14/137 (10%), Positives = 39/137 (28%), Gaps = 4/137 (2%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGY---IEEATRLYLKALEVFPEFAAAHSNL 190
            A++      +  P        L   +++       E   + + K+ +    +      L
Sbjct: 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
            + + +Q  +        +   +    ++    +G     + D+  A   +  A+  N  
Sbjct: 189 GN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247

Query: 251 FADAHSNLASIHKDSGK 267
               H          G+
Sbjct: 248 NFVEHRYALLELSLLGQ 264

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 4/88 (4%)

Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIR----IQPSFADAYSNMGNTLKEMQDIQGALQ 239
                 LA  LQ   +    L   ++ +          A      G     +     A  
Sbjct: 5   WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARN 64

Query: 240 CYSRAIQINPGFADAHSNLASIHKDSGK 267
            +S+A+ I P   +  + L      +G 
Sbjct: 65  DFSQALAIRPDMPEVFNYLGIYLTQAGN 92

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 6/90 (6%), Positives = 17/90 (18%), Gaps = 14/90 (15%)

Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQ----INPGFADAHSNLASIHKDSGKRGFFIR 273
                 +   L+     +  L    + +      +   A        ++   G R     
Sbjct: 5   WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARN 64

Query: 274 -----TDLNSAYFWLLLLDAHSNLASIHKD 298
                  +          +  + L      
Sbjct: 65  DFSQALAIRPDMP-----EVFNYLGIYLTQ 89

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  148 bits (376), Expect = 3e-42
 Identities = 42/116 (36%), Positives = 67/116 (57%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
           EA E Y  AL L P  A++  NL N   +QG  +EA   Y KALE+ P  A A  NL + 
Sbjct: 19  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78

Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
             +QG   +A+ +Y++A+ + P  A+A+ N+GN   +  D   A++ Y +A++++P
Sbjct: 79  YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  143 bits (363), Expect = 2e-40
 Identities = 39/118 (33%), Positives = 67/118 (56%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A++  NL N   +QG  +EA   Y KALE+ P  A A  NL +   +QG   +A+ +Y++
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           A+ + P  A+A+ N+GN   +  D   A++ Y +A++++P  A+A  NL + +   G 
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 74.7 bits (185), Expect = 3e-16
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 15/70 (21%)

Query: 2  IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           D AI+ Y++A+EL P   +A+ NL NA  ++G                P   +A+ NL 
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76

Query: 47 NALKEKGQIN 56
          NA  ++G  +
Sbjct: 77 NAYYKQGDYD 86

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.8 bits (128), Expect = 1e-08
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ 35
           D AI+ Y++A+EL P   +A+ NL NA  ++G 
Sbjct: 86  DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 51.6 bits (125), Expect = 4e-08
 Identities = 22/49 (44%), Positives = 27/49 (55%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
           EA E Y  AL L P  A++  NL N   +QG  +EA   Y KALE+ P 
Sbjct: 87  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 48.9 bits (118), Expect = 3e-07
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 15/51 (29%)

Query: 21 DAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQIN 56
          +A+ NL NA  ++G                P   +A+ NL NA  ++G  +
Sbjct: 2  EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 52

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  154 bits (392), Expect = 4e-41
 Identities = 34/298 (11%), Positives = 76/298 (25%), Gaps = 63/298 (21%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
             A+  +  A++  P+   AY   A      G+                +F  A     +
Sbjct: 43  ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102

Query: 48  ALKEKGQIN--VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRV 105
            L ++G+++        +K   +  P         S    +     L             
Sbjct: 103 LLLKQGKLDEAEDD---FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 106 EIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
                                        A    +  L +C   A+     A    ++G 
Sbjct: 160 T---------------------------AAIAFLDKILEVCVWDAELRELRAECFIKEGE 192

Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM- 224
             +A      A ++  +   A   ++++  Q G    +L   +E +++       +++  
Sbjct: 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 252

Query: 225 -----------GNTLKEMQDIQGALQCYSRAIQINPGFAD----AHSNLASIHKDSGK 267
                         L        A   Y   ++  P  A+    +   +        K
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK 310

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  142 bits (361), Expect = 6e-37
 Identities = 37/316 (11%), Positives = 76/316 (24%), Gaps = 97/316 (30%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYC---------------NLANALKEKGQ----------- 35
           +D A D +++ ++  P+  +                  + A      G            
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169

Query: 36  ----PNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSH 91
                   +     A    ++G+               A                     
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEP------------RKA--------------------- 196

Query: 92  LMQSVPGMHNKSRVEIFCYAL--SPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCP 147
                        +     A     D+   F Y IS L         +       L+L  
Sbjct: 197 -------------ISDLKAASKLKNDNTEAF-YKISTLYYQLGDHELSLSEVRECLKLDQ 242

Query: 148 THADSLNNLANIKR------------EQGYIEEATRLYLKALEVFPEFAA----AHSNLA 191
            H     +   +K+              G   +AT  Y   ++  P  A     +   + 
Sbjct: 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERIC 302

Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
               +  K  +A+    E ++++P   +A  +        +    A+Q Y  A + N   
Sbjct: 303 HCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362

Query: 252 ADAHSNLASIHKDSGK 267
                 L    +   +
Sbjct: 363 QQIREGLEKAQRLLKQ 378

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  124 bits (314), Expect = 1e-30
 Identities = 35/276 (12%), Positives = 76/276 (27%), Gaps = 52/276 (18%)

Query: 19  FPDAYCNLANALKEKGQ----PNFPDAYCNLANALKEKGQINVLHKPPYK-----YTR-- 67
               + +    L  +          + +  L   L   GQ               +    
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQ--------LADALSQFHAAV 53

Query: 68  ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGTTFSYI 123
           +  P N          +    T  L     G    +   +        L  D        
Sbjct: 54  DGDPDN-------YIAYYRRATVFLAM---GKSKAA---LPDLTKVIQLKMDFTAARLQR 100

Query: 124 ISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIK---------------REQGYIE 167
             +LL   ++ EAE+ +   L+  P+  +     + +                   G   
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
            A     K LEV    A      A    ++G+   A+   K A +++    +A+  +   
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220

Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
             ++ D + +L      ++++       ++   + K
Sbjct: 221 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  122 bits (308), Expect = 6e-30
 Identities = 25/152 (16%), Positives = 55/152 (36%), Gaps = 15/152 (9%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
           Q+++A   ++ A+   P +  +    A +    G  + A     K +++  +F AA    
Sbjct: 41  QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYS---------------NMGNTLKEMQDIQ 235
             +L +QGKL +A   +K+ ++  PS  +                  +         D  
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 236 GALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
            A+    + +++    A+     A      G+
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGE 192

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  109 bits (273), Expect = 2e-25
 Identities = 22/119 (18%), Positives = 35/119 (29%), Gaps = 11/119 (9%)

Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208
           H    ++       +    ++                 H  L   L   G+L DAL  + 
Sbjct: 2   HHHHHHSSGVDLGTENLYFQS-----------MADVEKHLELGKKLLAAGQLADALSQFH 50

Query: 209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
            A+   P    AY         M   + AL   ++ IQ+   F  A      +    GK
Sbjct: 51  AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  108 bits (271), Expect = 3e-25
 Identities = 32/270 (11%), Positives = 79/270 (29%), Gaps = 59/270 (21%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKP 61
              AI   + A +L+ +  +A+  ++    + G  +   +   +   L    +++  HK 
Sbjct: 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLG--DHELSLSEVRECL----KLDQDHKR 246

Query: 62  PYK-YTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF 120
            +  Y +       I         G +                                 
Sbjct: 247 CFAHYKQVKKLNKLIESAEELIRDGRY--------------------------------- 273

Query: 121 SYIISVLLLIQVSEAEECYNTALRLCPTHAD----SLNNLANIKREQGYIEEATRLYLKA 176
                       ++A   Y + ++  P+ A+    S   + +   +     EA R+  + 
Sbjct: 274 ------------TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321

Query: 177 LEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQG 236
           L++ P+   A  + A     +    +A+  Y+ A     +       +    + ++  Q 
Sbjct: 322 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381

Query: 237 ALQCYSRAIQINPGFAD---AHSNLASIHK 263
                   ++ N    +   A+  LA    
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWH 411

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 32/271 (11%), Positives = 65/271 (23%), Gaps = 88/271 (32%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNL------------ANALKEKGQPNFPDAYCNLANAL 49
            +L++   R  ++L  +    + +             A  L   G+  + DA     + +
Sbjct: 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR--YTDATSKYESVM 284

Query: 50  KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
           K         +P        +                                      C
Sbjct: 285 K--------TEPSIAEYTVRSKERI----------------------------------C 302

Query: 110 YALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
           +  S                 +  EA    +  L++ P + ++L + A     +   +EA
Sbjct: 303 HCFS--------------KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 348

Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHY------------------KEAI 211
            + Y  A E           L    +   +      +                   K A+
Sbjct: 349 IQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLAL 408

Query: 212 RIQPSFADAYSNMGNTLKEMQDIQGALQCYS 242
           +  P             K+  DI  A +  S
Sbjct: 409 QWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  144 bits (365), Expect = 8e-41
 Identities = 39/120 (32%), Positives = 68/120 (56%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
              A++  NL N   +QG  +EA   Y KALE+ P  A A  NL +   +QG   +A+ +
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
           Y++A+ + P+ A+A+ N+GN   +  D   A++ Y +A++++P  A+A  NL +  +  G
Sbjct: 66  YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  122 bits (309), Expect = 5e-33
 Identities = 37/98 (37%), Positives = 57/98 (58%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
           EA E Y  AL L P +A++  NL N   +QG  +EA   Y KALE+ P  A A  NL + 
Sbjct: 27  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86

Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM 231
             +QG   +A+ +Y++A+ + P+ A+A  N+GN  ++ 
Sbjct: 87  YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  116 bits (293), Expect = 7e-31
 Identities = 25/87 (28%), Positives = 49/87 (56%)

Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
              A A  NL +   +QG   +A+ +Y++A+ + P+ A+A+ N+GN   +  D   A++ 
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 241 YSRAIQINPGFADAHSNLASIHKDSGK 267
           Y +A++++P  A+A  NL + +   G 
Sbjct: 66  YQKALELDPNNAEAWYNLGNAYYKQGD 92

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 75.9 bits (188), Expect = 8e-17
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 15/70 (21%)

Query: 2  IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           D AI+ Y++A+EL PN  +A+ NL NA  ++G                PN  +A+ NL 
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84

Query: 47 NALKEKGQIN 56
          NA  ++G  +
Sbjct: 85 NAYYKQGDYD 94

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 74.4 bits (184), Expect = 4e-16
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
           EA E Y  AL L P +A++  NL N   +QG  +EA   Y KALE+ P  A A  NL + 
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120

Query: 194 LQQQG 198
            Q+QG
Sbjct: 121 KQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 54.7 bits (133), Expect = 3e-09
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 15/55 (27%)

Query: 17 PNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQIN 56
           N  +A+ NL NA  ++G                PN  +A+ NL NA  ++G  +
Sbjct: 6  GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 54.7 bits (133), Expect = 3e-09
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKG 34
           D AI+ Y++A+EL PN  +A  NL NA +++G
Sbjct: 94  DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Length = 631

 Score =  152 bits (385), Expect = 4e-39
 Identities = 24/195 (12%), Positives = 54/195 (27%), Gaps = 40/195 (20%)

Query: 470 GLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRL 529
               + +     +   K++P  L+    +       + +                     
Sbjct: 436 RENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHF------------------- 476

Query: 530 RPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG 589
                              L +   +    ++   ++   D         +   +++R  
Sbjct: 477 ------------------ALGQSNGITHPYVERFIKSYLGD--SATAHPHSPYHQYLRIL 516

Query: 590 QLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPE-LIARTHK 648
              D+ ++          +D++  G   V   G  +   +       LG PE LIA T  
Sbjct: 517 HNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVD 576

Query: 649 EYQDIAIRLGTDRDY 663
           EY + A+RL  +   
Sbjct: 577 EYVERAVRLAENHQE 591

>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Length = 631

 Score = 61.9 bits (150), Expect = 4e-10
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 323 QVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKER 382
           Q + LG+P T+ + +++Y+I +     +     +SE L  +P        + + P   + 
Sbjct: 376 QAIALGHPATTHSDFIEYVIVEDD--YVGSEECFSETLLRLPKDALPYVPSALAPEKVDY 433

>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Length = 631

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 14/129 (10%)

Query: 1   LIDLAIDTYRRAIELQ--PNFPDAYCNLANALKEKGQ-PNFPDAYCNLANALKEKGQINV 57
            I  +    +RA  LQ  P   D   NL N             +Y    N    K  +N 
Sbjct: 189 FIGTSTAFNKRATILQWFPRHLDQLKNLNNIPSAISHDVYMHCSYDTSVNKHDVKRALNH 248

Query: 58  L----------HKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
           +           K              + +  +      H       +   +  +    +
Sbjct: 249 VIRRHIESEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSM-IAAREHFYL 307

Query: 108 FCYALSPDD 116
                   D
Sbjct: 308 IGLGSPSVD 316

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  143 bits (364), Expect = 6e-39
 Identities = 37/281 (13%), Positives = 68/281 (24%), Gaps = 46/281 (16%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
             AI+ + +    + N P  Y   A    E     +  A  ++      K          
Sbjct: 20  AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA--KYDLAQKDI-ETYFSKVNATKAKSAD 76

Query: 63  YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGT 118
           ++Y            G +    G    +                I  Y            
Sbjct: 77  FEY-----------YGKILMKKGQDSLA----------------IQQYQAAVDRDTTRLD 109

Query: 119 TFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKAL 177
            +  I S          A +     +R   T       L           +A   ++K L
Sbjct: 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169

Query: 178 EVFPEFAAAHSNLASVLQQQG---KLTDALLHYKEAIRIQPS--------FADAYSNMGN 226
           E+ P     +   A     Q    K   A  +Y++ I +             +A   +  
Sbjct: 170 ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY 229

Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
                +D   A   +   + ++P    A   L    +    
Sbjct: 230 YYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  137 bits (347), Expect = 1e-36
 Identities = 32/275 (11%), Positives = 64/275 (23%), Gaps = 68/275 (24%)

Query: 20  PDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYK 64
            D     A+ L +                   N P  Y   A    E  + ++  K    
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 65  YTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYII 124
           Y  ++                                           +      F Y  
Sbjct: 63  YFSKVN-----------------------------------------ATKAKSADFEYYG 81

Query: 125 SVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF 183
            +L+   Q S A + Y  A+    T  D    + +    +G    A +   K +      
Sbjct: 82  KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141

Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD---IQGALQC 240
                 L        +   A   + + + ++P+    Y                  A   
Sbjct: 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPY 201

Query: 241 YSRAIQI--------NPGFADAHSNLASIHKDSGK 267
           Y + I++             +A+  +A  +  +  
Sbjct: 202 YEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  135 bits (343), Expect = 4e-36
 Identities = 16/136 (11%), Positives = 44/136 (32%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
           +  E Y + +      +        I  ++G    A + Y  A++        +  + S 
Sbjct: 58  KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117

Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
              +G    A+ + ++ IR   +    +  +G      ++   A   + + +++ P    
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177

Query: 254 AHSNLASIHKDSGKRG 269
            +   A  +       
Sbjct: 178 GYLWRARANAAQDPDT 193

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  123 bits (310), Expect = 1e-31
 Identities = 32/262 (12%), Positives = 54/262 (20%), Gaps = 79/262 (30%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
            I+TY   +         +      L +KGQ                   D Y  + +  
Sbjct: 59  DIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118

Query: 50  KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
             K                                             G    +   I  
Sbjct: 119 YNK---------------------------------------------GNFPLA---IQY 130

Query: 110 Y----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
                  +  D   F  +        +  +A+  +   L L P         A     Q 
Sbjct: 131 MEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQD 190

Query: 165 ---YIEEATRLYLKALEVFPE--------FAAAHSNLASVLQQQGKLTDALLHYKEAIRI 213
                  A   Y K +EV              A+  +A           A   +K  + +
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

Query: 214 QPSFADAYSNMGNTLKEMQDIQ 235
            P+   A   +   L+      
Sbjct: 251 DPTNKKAIDGLKMKLEHHHHHH 272

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  140 bits (354), Expect = 4e-38
 Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 3/140 (2%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
              +A      AL+  P +  +    A I +     ++A   + +AL + P+ A  ++N 
Sbjct: 23  DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82

Query: 191 ASVL-QQQGKLTDALLHYKEAIR--IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247
              L  +  +  +++ ++ +A+     P+   A  N G    +      A     R++  
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142

Query: 248 NPGFADAHSNLASIHKDSGK 267
            P F  A   LA     +G+
Sbjct: 143 QPQFPPAFKELARTKMLAGQ 162

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  135 bits (342), Expect = 2e-36
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 3/132 (2%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANI-KREQGYIEEATRLYLKALEV--FPEFAAAH 187
              +A+E +  AL + P  A+  NN             E+   + KAL    +P    A+
Sbjct: 57  VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN 116

Query: 188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247
            N      +QG+   A  + K ++  QP F  A+  +  T      +  A   + +    
Sbjct: 117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176

Query: 248 NPGFADAHSNLA 259
                     L 
Sbjct: 177 VEVLQADDLLLG 188

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  122 bits (309), Expect = 7e-32
 Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 13/160 (8%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
              ++    LA          +AT     AL+  P+   A    A + Q       A   
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64

Query: 207 YKEAIRIQPSFADAYSNMGNTLK-EMQDIQGALQCYSRAIQ--INPGFADAHSNLASIHK 263
           +++A+ I+P  A+  +N G  L   +     ++  + +A+     P    A+ N      
Sbjct: 65  FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA 124

Query: 264 DSGK----RGFFIRT-DLNSAYFWLLLLDAHSNLASIHKD 298
             G+      +  R+      +       A   LA     
Sbjct: 125 KQGQFGLAEAYLKRSLAAQPQF-----PPAFKELARTKML 159

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  115 bits (289), Expect = 3e-29
 Identities = 35/266 (13%), Positives = 62/266 (23%), Gaps = 75/266 (28%)

Query: 14  ELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVL 58
           E      +    LA                       P    A+   A   +        
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVN--- 58

Query: 59  HKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSP 114
                    + A                                       +    ++ P
Sbjct: 59  ---------DKA------------------------------------QESFRQALSIKP 73

Query: 115 DDGTTFSYIISVLLLIQVSEAEE---CYNTALR--LCPTHADSLNNLANIKREQGYIEEA 169
           D            L  +++   E    ++ AL     PT   +  N      +QG    A
Sbjct: 74  DSAEIN-NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132

Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
                ++L   P+F  A   LA      G+L DA  ++K+             ++    K
Sbjct: 133 EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD--DLLLGWK 190

Query: 230 EMQDIQGALQCYSRAIQINPGFADAH 255
             + +  A   Y    Q+   F  + 
Sbjct: 191 IAKALGNAQAAYEYEAQLQANFPYSE 216

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  106 bits (267), Expect = 3e-26
 Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 13/129 (10%)

Query: 178 EVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA 237
           E   + +   + LA    +      A    ++A++  P    A+       + ++    A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 238 LQCYSRAIQINPGFADAHSNLASIHKDSGKR-----GFF---IRTDLNSAYFWLLLLDAH 289
            + + +A+ I P  A+ ++N          R      +F   +        +      A+
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY-----IAN 116

Query: 290 SNLASIHKD 298
            N       
Sbjct: 117 LNKGICSAK 125

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  100 bits (251), Expect = 4e-24
 Identities = 34/219 (15%), Positives = 62/219 (28%), Gaps = 61/219 (27%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
           D A +++R+A+ ++P+  +   N    L  +      ++      AL +          P
Sbjct: 59  DKAQESFRQALSIKPDSAEINNNYGWFLCGRLN-RPAESMAYFDKALAD----------P 107

Query: 63  YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY 122
              T  +A  N+   G  S+  G                                     
Sbjct: 108 TYPTPYIANLNK---GICSAKQG------------------------------------- 127

Query: 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
                   Q   AE     +L   P    +   LA  K   G + +A   + K       
Sbjct: 128 --------QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179

Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
             A    L    +    L +A   Y+   ++Q +F  + 
Sbjct: 180 LQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPYSE 216

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 78.8 bits (195), Expect = 9e-17
 Identities = 31/218 (14%), Positives = 54/218 (24%), Gaps = 48/218 (22%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
             A  +   A++  P    A+   A   +                   P+  +   N   
Sbjct: 25  RQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84

Query: 48  ALKEKGQ-----INVLHK---PPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGM 99
            L  +       +    K    P   T  +A  N+   G  S+  G    +         
Sbjct: 85  FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK---GICSAKQGQFGLA--------- 132

Query: 100 HNKSRVEIFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTH-ADSL 153
                          A  P     F  +    +L  Q+ +A+  +           AD L
Sbjct: 133 -------EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185

Query: 154 NNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
                I +  G  + A     +    FP      + L 
Sbjct: 186 LLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  145 bits (368), Expect = 8e-38
 Identities = 47/306 (15%), Positives = 77/306 (25%), Gaps = 77/306 (25%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ-------------------PNFPDAYC 43
             AID  R+AI L P+       LA  L +  +                   P   D   
Sbjct: 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251

Query: 44  NLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKS 103
           + A   + K + +       K   E  P              N+   H            
Sbjct: 252 SAAKFYRRKDEPD-KAIELLKKALEYIP--------------NNAYLH--------CQIG 288

Query: 104 RVEIFCY---ALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIK 160
                CY        +           LL  +  A      A           + LA++ 
Sbjct: 289 ----CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344

Query: 161 REQGYIEEATRLYLKALEVFPEFAAA---HSNLASVLQQQGKLTD-ALLHYKEAIRIQ-- 214
                 EEA   + K         A    H    +    Q K  D A+ H+ E ++I   
Sbjct: 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404

Query: 215 ----------------------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
                                  + ++A   +    +  + +Q A +   R ++      
Sbjct: 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464

Query: 253 DAHSNL 258
            A S  
Sbjct: 465 SASSWN 470

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  139 bits (352), Expect = 1e-35
 Identities = 45/338 (13%), Positives = 82/338 (24%), Gaps = 92/338 (27%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ------------------PNFPDAYCN 44
           + A   + +A+E +P  P+    LA A                        P+       
Sbjct: 155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214

Query: 45  LANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSR 104
           LA  L +  +         K   E                                    
Sbjct: 215 LALKLHKMREEGEEEGEGEKLVEE------------------------------------ 238

Query: 105 VEIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQ 163
                   +P                 +  +A E    AL   P +A     +    R +
Sbjct: 239 ----ALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294

Query: 164 GY-------------------IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL 204
            +                   I  A     KA E         S LAS+     +  +A 
Sbjct: 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE 354

Query: 205 LHYKEAIRIQPSFADA---YSNMGNTLK-EMQDIQGALQCYSRAIQINPGFADAHSNLAS 260
            ++++    + +       +   GN    +M+    A+  +   ++IN    +       
Sbjct: 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDK 414

Query: 261 IHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKD 298
           + K +       R   N A        A   LA + + 
Sbjct: 415 LQKIAKM-----RLSKNGADSE-----ALHVLAFLQEL 442

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  134 bits (338), Expect = 9e-34
 Identities = 44/279 (15%), Positives = 77/279 (27%), Gaps = 26/279 (9%)

Query: 2   IDLAIDTYRRAIELQPNFPDA--YCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLH 59
           +D   D      E Q     A     LA     KGQ     A   L  A     ++    
Sbjct: 31  LDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNE--AALECLRKAE----ELIQQE 84

Query: 60  KPPYKYTRELAP-GNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGT 118
                  R L   GN     +V    G      +         +     F      +   
Sbjct: 85  HADQAEIRSLVTWGN---YAWVYYHMGRLSDVQIYVDKVKHVCE----KFSSPYRIESPE 137

Query: 119 TFSYIISVLLLI---QVSEAEECYNTALRLCPTHADSLNNLANIKR---EQGYIEEATRL 172
                    L     Q   A+ C+  AL   P + +  + LA            + A   
Sbjct: 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDP 197

Query: 173 YLKALEVFPEFAAAHSNLASVLQ----QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
             +A+ + P+       LA  L     +  +  +     +EA+   P   D   +     
Sbjct: 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY 257

Query: 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           +   +   A++   +A++  P  A  H  +   ++    
Sbjct: 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVF 296

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  103 bits (257), Expect = 2e-23
 Identities = 28/235 (11%), Positives = 57/235 (24%), Gaps = 35/235 (14%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKP 61
            D AI+  ++A+E  PN    +C +    + K           +    K    I      
Sbjct: 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322

Query: 62  PYKYTRELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALS----P 114
             K   E           +  + +    +              +     F    S    P
Sbjct: 323 -LKKADEANDNLFRVCSILASLHALADQY--------------EEAEYYFQKEFSKELTP 367

Query: 115 DDGTTFSYIISVLLLIQ---VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATR 171
                         L Q     +A   +   +++     +       +++          
Sbjct: 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQK---------- 417

Query: 172 LYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
           +    L      + A   LA + +   K+  A    +  +        A S  G 
Sbjct: 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 91.5 bits (227), Expect = 1e-19
 Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 21/161 (13%)

Query: 130 IQVSEAEECYNTALRLCPT--HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH 187
             + + E+              A   N LA +K  +G  E A     KA E+  +  A  
Sbjct: 29  NSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ 88

Query: 188 ---------SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS--------NMGNTLKE 230
                     N A V    G+L+D  ++  +   +   F+  Y           G T  +
Sbjct: 89  AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLK 148

Query: 231 M--QDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269
                 + A  C+ +A++  P   +  S LA          
Sbjct: 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWP 189

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 77.7 bits (191), Expect = 3e-15
 Identities = 25/195 (12%), Positives = 54/195 (27%), Gaps = 44/195 (22%)

Query: 1   LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHK 60
           LI  A+   ++A E   N       LA+      Q  + +A                   
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQ--YEEAEYYFQKEFS---------- 362

Query: 61  PPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE-IFCY----ALSPD 115
                 +EL P  +  +     +F  +              K   + I  +     ++  
Sbjct: 363 ------KELTPVAKQLLHLRYGNFQLY------------QMKCEDKAIHHFIEGVKINQK 404

Query: 116 DGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLK 175
                             + ++     L      +++L+ LA ++     +++A     +
Sbjct: 405 SREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455

Query: 176 ALEVFPEFAAAHSNL 190
            LE      +A S  
Sbjct: 456 GLESGSLIPSASSWN 470

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  144 bits (364), Expect = 3e-37
 Identities = 38/285 (13%), Positives = 79/285 (27%), Gaps = 65/285 (22%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
               D  R+  ++Q         +   L          A      AL      +   +  
Sbjct: 68  HSVEDAGRKQQDVQEEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVL 125

Query: 63  YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY 122
                +L P                  +         +                G  +  
Sbjct: 126 LSKAVKLEP--------------ELVEAW--------NQL--------------GEVYWK 149

Query: 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG---------YIEEATRLY 173
                    V+ A  C++ AL  C  +  SL NL+ + R+           ++ ++ R  
Sbjct: 150 ------KGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202

Query: 174 LKALEVFPEFAAAHSNLASVL--------QQQGKLTDALLHYKEAIRIQ---PSFADAYS 222
             A+++      +   L +          Q       AL  Y +A ++     S  D + 
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL 262

Query: 223 NMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           N     K  +    AL+ +S+A  ++P + +       + +   +
Sbjct: 263 NRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  119 bits (299), Expect = 8e-29
 Identities = 50/355 (14%), Positives = 104/355 (29%), Gaps = 58/355 (16%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKG----------------QPNFPDAYCNL 45
           ++  +      +        A      AL                    +P   +A+  L
Sbjct: 84  MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQL 143

Query: 46  ANALKEKGQIN---------VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSV 96
                +KG +          + H       + L+   R     + +D G+  + H+M SV
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLR----QLQTDSGDEHSRHVMDSV 199

Query: 97  PGMHNKSRVEIFCYALSPDD-------GTTFSYIISVLL--LIQVSEAEECYNTALRL-- 145
                K  V++        D       G  +  +            +A   Y  A ++  
Sbjct: 200 --RQAKLAVQM-----DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252

Query: 146 -CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL 204
              ++ D   N A + + +    EA   + +A  + P +         +L+   +LT  L
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312

Query: 205 LHY-----KEAIRIQPSFADAYSNM-GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
                   K+   +  S   A+    G+   +    Q           + PG       L
Sbjct: 313 ESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVL 372

Query: 259 ----ASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIH 309
                S+  +      F   D +   + +++ +   +   +  DSV +    + H
Sbjct: 373 GKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNVVQSWGVLIGDSVAIPEPNLRH 427

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  103 bits (257), Expect = 2e-23
 Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 19/172 (11%)

Query: 114 PDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKRE----------- 162
              G+  + +     + + S   +    A  +       ++ L   +             
Sbjct: 15  VPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAG 74

Query: 163 ------QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLT-DALLHYKEAIRIQP 215
                 Q  +E+  +   + L      A A       L      + +A +   +A++++P
Sbjct: 75  RKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP 134

Query: 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
              +A++ +G    +  D+  A  C+S A+        +  NL+ + +    
Sbjct: 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQT 185

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 47.7 bits (113), Expect = 8e-06
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 12/123 (9%)

Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
              A        VLQ+   L D L  ++++     S  DA     +  +EM+     LQ 
Sbjct: 34  SMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEK---TLQQ 90

Query: 241 YSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLL-----DAHSNLASI 295
               +      A A          +          L+ A    + L     +A + L  +
Sbjct: 91  MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA----VKLEPELVEAWNQLGEV 146

Query: 296 HKD 298
           +  
Sbjct: 147 YWK 149

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  140 bits (353), Expect = 1e-34
 Identities = 34/281 (12%), Positives = 82/281 (29%), Gaps = 27/281 (9%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
              +    +A  L P+   A  +     +                   P+   A  +   
Sbjct: 311 QRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 370

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
             +    +  L  P       L P     +  ++S+ G      + + +P +        
Sbjct: 371 GKQALETVQRL-LPVLCQAHGLTPDQ---VVAIASNGGKQALETVQRLLPVLCQA----- 421

Query: 108 FCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
             + L+PD     +        +  V            L P    ++ +    K+    +
Sbjct: 422 --HGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETV 479

Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
           ++   +  +A  + P+   A ++     Q    +   L    +A  + P    A ++ G 
Sbjct: 480 QQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGG 539

Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
             + ++ +Q  L    +A  + P    A ++     +    
Sbjct: 540 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 580

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  139 bits (352), Expect = 2e-34
 Identities = 31/282 (10%), Positives = 79/282 (28%), Gaps = 26/282 (9%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           +   +    +A  L P+   A  +     +                   P    A  +  
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHD 470

Query: 47  NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
              +    +  L        +         +   S+  G    + + + +P +  ++   
Sbjct: 471 GGKQALETVQQLLPV---LCQAHGLTPDQVVAIASNIGGKQALATVQRLLP-VLCQA--- 523

Query: 107 IFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
              + L+PD     +        L  V         A  L P    ++ +    K+    
Sbjct: 524 ---HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 580

Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
           ++    +  +A  +      A ++     Q    +   L    +A  + P+   A ++  
Sbjct: 581 VQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHD 640

Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
              + ++ +Q  L    +A  + P    A ++     +    
Sbjct: 641 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 682

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  135 bits (340), Expect = 5e-33
 Identities = 32/279 (11%), Positives = 73/279 (26%), Gaps = 30/279 (10%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
              +    +A  L P+   A  +     +                   P+   A  +   
Sbjct: 514 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 573

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
             +    +  L  P       L                ++              +  + +
Sbjct: 574 GKQALETVQRL-LPVLCQAHGLTQVQ-------VVAIASNIGGKQALE----TVQRLLPV 621

Query: 108 FCYAL--SPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
            C A   +P      +        L  V         A  L P    ++ +    K+   
Sbjct: 622 LCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 681

Query: 165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224
            ++    +  +A  +  E   A ++     Q    +   L    +A  + P    A ++ 
Sbjct: 682 TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 741

Query: 225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
           G   + ++ +Q  L    +A  + P    A ++     +
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQ 780

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  134 bits (337), Expect = 1e-32
 Identities = 27/281 (9%), Positives = 65/281 (23%), Gaps = 60/281 (21%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
              +    +A  L P+   A  +     +                   P+   A  +   
Sbjct: 480 QQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGG 539

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
             +    +  L        +                                        
Sbjct: 540 GKQALETVQRLLP---VLCQAHG------------------------------------- 559

Query: 108 FCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
               L+PD     +        +  V         A  L      ++ +    K+    +
Sbjct: 560 ----LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETV 615

Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
           +    +  +A  + P    A ++     Q    +   L    +A  + P    A ++ G 
Sbjct: 616 QRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 675

Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
             + ++ +Q  L    +A  +      A ++     +    
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALET 716

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  133 bits (336), Expect = 2e-32
 Identities = 32/280 (11%), Positives = 72/280 (25%), Gaps = 25/280 (8%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
              +    +A  L P+   A  +     +                   P+   A  +   
Sbjct: 277 QRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDG 336

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
             +    +  L  P       L P   + I        ++                  + 
Sbjct: 337 GKQALETVQRL-LPVLCQAHGLTPDQVVAI-------ASNGGGKQALETVQRLLPVLCQA 388

Query: 108 FCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE 167
             + L+PD     +       L  V         A  L P    ++ +    K+    ++
Sbjct: 389 --HGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQ 446

Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
               +  +   + P    A ++     Q    +   L    +A  + P    A ++    
Sbjct: 447 RLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG 506

Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
            + +  +Q  L    +A  + P    A ++     +    
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 546

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  132 bits (334), Expect = 3e-32
 Identities = 29/281 (10%), Positives = 67/281 (23%), Gaps = 61/281 (21%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
              +    +A  L P    A  +     +                   P+   A  +   
Sbjct: 209 QRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIG 268

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
             +       + +      +                                        
Sbjct: 269 GKQALET---VQRLLPVLCQAHG------------------------------------- 288

Query: 108 FCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
               L+PD     +        L  V         A  L P    ++ +    K+    +
Sbjct: 289 ----LTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETV 344

Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
           +    +  +A  + P+   A ++     Q    +   L    +A  + P    A ++ G 
Sbjct: 345 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 404

Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
             + ++ +Q  L    +A  + P    A ++     +    
Sbjct: 405 -KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALET 444

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  132 bits (333), Expect = 4e-32
 Identities = 29/281 (10%), Positives = 67/281 (23%), Gaps = 61/281 (21%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
              +    +A  L P+   A  +     +                   P+   A  +   
Sbjct: 243 QRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGG 302

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
             +                R L    +                                 
Sbjct: 303 GKQALE----------TVQRLLPVLCQA-------------------------------- 320

Query: 108 FCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
             + L+PD     +        L  V         A  L P    ++ +    K+    +
Sbjct: 321 --HGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 378

Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
           +    +  +A  + P+   A ++     Q    +   L    +A  + P    A ++   
Sbjct: 379 QRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDG 437

Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
             + ++ +Q  L    +   + P    A ++     +    
Sbjct: 438 GKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALET 478

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  129 bits (325), Expect = 4e-31
 Identities = 22/158 (13%), Positives = 50/158 (31%), Gaps = 1/158 (0%)

Query: 111 ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
            L+P      +        L  V         A  L P    ++ +    K+    ++  
Sbjct: 186 NLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRL 245

Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
             +  +A  + P+   A ++     Q    +   L    +A  + P    A ++ G   +
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQ 305

Query: 230 EMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
            ++ +Q  L    +A  + P    A ++     +    
Sbjct: 306 ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALET 343

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  127 bits (319), Expect = 2e-30
 Identities = 33/282 (11%), Positives = 74/282 (26%), Gaps = 29/282 (10%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLAN---------ALKEKGQ-----PNFPDAYCNLANA 48
              +    +A  L P+   A  +             L    Q     P+   A  +    
Sbjct: 379 QRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 438

Query: 49  LKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF 108
            +    +  L  P    T  L P              +H              +  + + 
Sbjct: 439 KQALETVQRL-LPVLCQTHGLTPAQ-------VVAIASHDGGKQALE----TVQQLLPVL 486

Query: 109 CYALSPDDGTTFSYIISVLLLI---QVSEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
           C A         +   ++        V         A  L P    ++ +    K+    
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 546

Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
           ++    +  +A  + P+   A ++     Q    +   L    +A  +      A ++  
Sbjct: 547 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI 606

Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
              + ++ +Q  L    +A  + P    A ++     +    
Sbjct: 607 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALET 648

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  127 bits (319), Expect = 2e-30
 Identities = 34/319 (10%), Positives = 83/319 (26%), Gaps = 39/319 (12%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           +   +    +A  L P+   A  +     +                   P+   A  +  
Sbjct: 344 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 403

Query: 47  NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
                +    +L  P       L P              +   +       G      V+
Sbjct: 404 GKQALETVQRLL--PVLCQAHGLTP--------------DQVVAIASHDG-GKQALETVQ 446

Query: 107 --IFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANI 159
             +        L+P      +        L  V +       A  L P    ++ +    
Sbjct: 447 RLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG 506

Query: 160 KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD 219
           K+    ++    +  +A  + P+   A ++     Q    +   L    +A  + P    
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

Query: 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSA 279
           A ++ G   + ++ +Q  L    +A  +      A ++     +        +     + 
Sbjct: 567 AIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAH 626

Query: 280 YFWLLLLDAHSNLASIHKD 298
                 + A ++     + 
Sbjct: 627 GLTPAQVVAIASHDGGKQA 645

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  115 bits (290), Expect = 8e-27
 Identities = 28/272 (10%), Positives = 74/272 (27%), Gaps = 26/272 (9%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
              +    +A  L P+   A  +     +                        A  +   
Sbjct: 548 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIG 607

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
             +       + +      +         +   S D G      + + +P +  ++    
Sbjct: 608 GKQALET---VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLP-VLCQA---- 659

Query: 108 FCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
             + L+PD     +        L  V         A  L      ++ +    K+    +
Sbjct: 660 --HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETV 717

Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
           +    +  +A  + P+   A ++     Q    +   L    +A  + P+   A ++   
Sbjct: 718 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIG 777

Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
             + ++ +Q  L    +   +      A ++ 
Sbjct: 778 GKQALETVQRLLPVLCQDHGLTLAQVVAIASN 809

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  112 bits (281), Expect = 1e-25
 Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 5/139 (3%)

Query: 134 EAEECYNTALR-----LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188
           EA      AL      L P    ++ +    K+    ++    +  +A  + P    A +
Sbjct: 171 EAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIA 230

Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
           +     Q    +   L    +A  + P    A ++     + ++ +Q  L    +A  + 
Sbjct: 231 SHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 290

Query: 249 PGFADAHSNLASIHKDSGK 267
           P    A ++     +    
Sbjct: 291 PDQVVAIASHGGGKQALET 309

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 99.0 bits (246), Expect = 1e-21
 Identities = 18/135 (13%), Positives = 42/135 (31%)

Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
           ++A E     L+L       +     +   +        L    L + P    A ++   
Sbjct: 141 TDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNG 200

Query: 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
             Q    +   L    +A  + P+   A ++     + ++ +Q  L    +A  + P   
Sbjct: 201 GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQV 260

Query: 253 DAHSNLASIHKDSGK 267
            A ++     +    
Sbjct: 261 VAIASNIGGKQALET 275

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 85.5 bits (211), Expect = 2e-17
 Identities = 29/274 (10%), Positives = 73/274 (26%), Gaps = 31/274 (11%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
              +    +A  L P+   A  +     +                   P    A  +   
Sbjct: 718 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIG 777

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
             +    +  L  P       L     + I        N      +++V     +  + +
Sbjct: 778 GKQALETVQRL-LPVLCQDHGLTLAQVVAIAS------NIGGKQALETV-----QRLLPV 825

Query: 108 FC--YALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
            C  + L+ D     +  I     +  V            L P    ++ +    K+   
Sbjct: 826 LCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALE 885

Query: 165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224
            ++    +  +   +  +   A ++     Q    +   L    +   + P    A ++ 
Sbjct: 886 TVQRLLPVLCQDHGLTLDQVVAIASNGGK-QALETVQRLLPVLCQDHGLTPDQVVAIASN 944

Query: 225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
               + ++ +Q  L    +   + P    A ++ 
Sbjct: 945 SGGKQALETVQRLLPVLCQDHGLTPNQVVAIASN 978

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 84.7 bits (209), Expect = 4e-17
 Identities = 30/277 (10%), Positives = 73/277 (26%), Gaps = 27/277 (9%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
              +    +A  L      A  +     +                   P+   A  +   
Sbjct: 684 QRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 743

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
             +    +  L  P       L P   +     S+  G      + + +P +        
Sbjct: 744 GKQALETVQRLL-PVLCQAHGLTPAQVVA--IASNIGGKQALETVQRLLPVLCQD----- 795

Query: 108 FCYALSPDD-GTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
             + L+        S I     L  V         A  L      ++ +    K+    +
Sbjct: 796 --HGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETV 853

Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
           +    +  +   + P+   A ++     Q    +   L    +   +      A ++ G 
Sbjct: 854 QRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGG 913

Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
             + ++ +Q  L    +   + P    A ++ +   +
Sbjct: 914 K-QALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQ 949

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 77.0 bits (189), Expect = 1e-14
 Identities = 29/273 (10%), Positives = 72/273 (26%), Gaps = 26/273 (9%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
              +    +A  L P+   A  +     +                        A  +   
Sbjct: 650 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNG 709

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
             +    +  L  P       L P     +   S+  G      + + +P +  ++    
Sbjct: 710 GKQALETVQRLL-PVLCQAHGLTPDQ--VVAIASNGGGKQALETVQRLLP-VLCQA---- 761

Query: 108 FCYALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
             + L+P       S I     L  V            L      ++ +    K+    +
Sbjct: 762 --HGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETV 819

Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
           +    +  +A  +  +   A ++     Q    +   L    +   + P    A ++   
Sbjct: 820 QRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIG 879

Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
             + ++ +Q  L    +   +      A ++  
Sbjct: 880 GKQALETVQRLLPVLCQDHGLTLDQVVAIASNG 912

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 10/135 (7%)

Query: 139 YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198
           ++ AL     H  +  ++  + +    +      Y   +   PE       +    Q  G
Sbjct: 77  HHEALVG---HGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHED-IVGVGKQWSG 132

Query: 199 KLT-DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA-----IQINPGFA 252
               +ALL     +R  P   D    +    +       A+     A     + + P   
Sbjct: 133 ARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQV 192

Query: 253 DAHSNLASIHKDSGK 267
            A ++     +    
Sbjct: 193 VAIASNNGGKQALET 207

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  121 bits (306), Expect = 9e-32
 Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 17/154 (11%)

Query: 131 QVSEAEECYNTALRLCPTHAD----------------SLNNLANIKREQGYIEEATRLYL 174
           Q  +A   +   + L     +                    LA   ++    ++A   Y 
Sbjct: 19  QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78

Query: 175 KALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM-QD 233
           + L+  P         A +   +G+  DAL  Y++ ++++     A   +GN      + 
Sbjct: 79  ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138

Query: 234 IQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
            +  L+   + +        A          + +
Sbjct: 139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTR 172

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  119 bits (301), Expect = 4e-31
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 2/135 (1%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
           +A   Y   L+  P + D L   A ++  +G  ++A R+Y K L++  +  AA+  L + 
Sbjct: 72  KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131

Query: 194 LQQQGKLTD-ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
                +     L    + +        A    G +       + A     + I   P   
Sbjct: 132 YYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191

Query: 253 DAHSNLASIHKDSGK 267
            A   L  I +   +
Sbjct: 192 -AQKTLDKILRIEKE 205

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  112 bits (281), Expect = 2e-28
 Identities = 19/137 (13%), Positives = 45/137 (32%), Gaps = 16/137 (11%)

Query: 148 THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH----------------SNLA 191
              D +    +   E G   +A   + + + +  +    +                + LA
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
              ++      A L YKE ++  P+  D               + AL+ Y + +Q+    
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

Query: 252 ADAHSNLASIHKDSGKR 268
             A+  L + +  + ++
Sbjct: 122 LAANIFLGNYYYLTAEQ 138

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 79.8 bits (197), Expect = 4e-17
 Identities = 32/211 (15%), Positives = 55/211 (26%), Gaps = 38/211 (18%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQ----INVL 58
             A+  +R+ I L  +  + Y        +K           LA A K+           
Sbjct: 21  GQAVSYFRQTIALNIDRTEMYYWTN---VDKNSEISSKLATELALAYKKNRNYDKAYLF- 76

Query: 59  HKPPYKYTRELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----A 111
               YK   + AP N         +    G    +                +  Y     
Sbjct: 77  ----YKELLQKAPNNVDCLEACAEMQVCRGQEKDA----------------LRMYEKILQ 116

Query: 112 LSPDDGTTFSYI--ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
           L  D+     ++     L   Q  +  E     L        +       K      E+A
Sbjct: 117 LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKA 176

Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKL 200
                K +  FP    A   L  +L+ + ++
Sbjct: 177 RNSLQKVILRFPS-TEAQKTLDKILRIEKEV 206

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 22/184 (11%), Positives = 37/184 (20%), Gaps = 64/184 (34%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
           D A   Y+  ++  PN  D     A     +GQ                +   A   L N
Sbjct: 71  DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGN 130

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
                 +                                               K ++E 
Sbjct: 131 YYYLTAE---------------------------------------------QEKKKLET 145

Query: 108 FCYALS--PDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
               LS                L   +  +A       +   P+   +   L  I R + 
Sbjct: 146 DYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKILRIEK 204

Query: 165 YIEE 168
            +  
Sbjct: 205 EVNR 208

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score =  115 bits (290), Expect = 6e-31
 Identities = 25/86 (29%), Positives = 49/86 (56%)

Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
              A A  NL +   +QG   +A+ +Y++A+ + P+ A+A+ N+GN   +  D   A++ 
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 241 YSRAIQINPGFADAHSNLASIHKDSG 266
           Y +A++++P  A+A  NL +  +  G
Sbjct: 66  YQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score =  104 bits (262), Expect = 4e-27
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
              A++  NL N   +QG  +EA   Y KALE+ P  A A  NL +   +QG   +A+ +
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 207 YKEAIRIQPSFADAYSNMGNTLKE 230
           Y++A+ + P+ A+A  N+GN  ++
Sbjct: 66  YQKALELDPNNAEAKQNLGNAKQK 89

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 76.7 bits (190), Expect = 2e-17
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 15/66 (22%)

Query: 3  DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
          D AI+ Y++A+EL PN  +A+ NL NA  ++G                PN  +A  NL N
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85

Query: 48 ALKEKG 53
          A +++G
Sbjct: 86 AKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 75.1 bits (186), Expect = 8e-17
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 16/92 (17%)

Query: 215 PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRT 274
            + A+A+ N+GN   +  D   A++ Y +A++++P  A+A  NL + +   G        
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD------- 58

Query: 275 DLNSA---YFWLLLL-----DAHSNLASIHKD 298
             + A   Y   L L     +A  NL +  + 
Sbjct: 59  -YDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 73.6 bits (182), Expect = 2e-16
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
           EA E Y  AL L P +A++  NL N   +QG  +EA   Y KALE+ P  A A  NL + 
Sbjct: 27  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86

Query: 194 LQQQG 198
            Q+QG
Sbjct: 87  KQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 55.9 bits (136), Expect = 4e-10
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 15/55 (27%)

Query: 17 PNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQIN 56
           N  +A+ NL NA  ++G                PN  +A+ NL NA  ++G  +
Sbjct: 6  GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  117 bits (294), Expect = 2e-28
 Identities = 59/316 (18%), Positives = 100/316 (31%), Gaps = 77/316 (24%)

Query: 5   AIDTYRRAIELQ----PNFPDAYCNLANALKEKGQP------------------NFPD-- 40
            +  ++ AI+            Y  L NA    G                    +     
Sbjct: 67  GVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126

Query: 41  -AYCNLANALKEKGQIN---VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSV 96
            +  NL N LK  G+ +   +  +      R+L  G+R+  G    + GN          
Sbjct: 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGN---------- 174

Query: 97  PGMHNKSRVEIFCY-ALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC------PTH 149
                        Y A     G          +   ++ A E Y   L+L          
Sbjct: 175 ------------VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ 222

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTDA 203
             +  NL N     G  + A   + + L +  EF        A+SNL +     G+  DA
Sbjct: 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282

Query: 204 LLHYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI------NPGF 251
             HYK  + +      +   A +  ++GNT   + +   A++ ++R + I        G 
Sbjct: 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342

Query: 252 ADAHSNLASIHKDSGK 267
           A A  +L + H   G 
Sbjct: 343 ARACWSLGNAHSAIGG 358

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  102 bits (256), Expect = 2e-23
 Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 22/161 (13%)

Query: 129 LIQVSEAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVF-- 180
           L         ++   +         +    L          G        +  A++    
Sbjct: 21  LGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE 80

Query: 181 --PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQ 232
                +A +S L +     G    A+ ++K  + +      +   A +  N+GNTLK M 
Sbjct: 81  DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140

Query: 233 DIQGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
               A  C  R + +            A  NL +++   GK
Sbjct: 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 12/92 (13%)

Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVF------P 181
           +A E Y   L L          A S  +L N          A   + + L +        
Sbjct: 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340

Query: 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRI 213
             A A  +L +     G    AL + ++ +++
Sbjct: 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score =  107 bits (271), Expect = 4e-28
 Identities = 13/108 (12%), Positives = 38/108 (35%), Gaps = 2/108 (1%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
             + +       ++ + G   E+  L+ KA+++ PE +         L    +  +A+  
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 207 YKEAIRIQP--SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
           Y   I +       D ++   + L+ ++  +   +      ++     
Sbjct: 63  YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 96.4 bits (241), Expect = 5e-24
 Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
            +    +     +    G  T+++  +++AI++ P  +  +   G  L  ++  + A+ C
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 241 YSRAIQINP--GFADAHSNLASIHKDSGK 267
           Y+  I +       D  +  A   +    
Sbjct: 63  YNYVINVIEDEYNKDVWAAKADALRYIEG 91

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 65.9 bits (162), Expect = 2e-13
 Identities = 6/55 (10%), Positives = 19/55 (34%)

Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           +     + Y   G    +  +   ++  + +AIQ++P  +           +  +
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER 55

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 59.0 bits (144), Expect = 6e-11
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 17/67 (25%)

Query: 5  AIDTYRRAIELQPNFPDAYCNLANALKEKGQ-----------------PNFPDAYCNLAN 47
          +ID + +AI+L P     +     AL    +                     D +   A+
Sbjct: 25 SIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84

Query: 48 ALKEKGQ 54
          AL+    
Sbjct: 85 ALRYIEG 91

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 6/53 (11%), Positives = 10/53 (18%), Gaps = 15/53 (28%)

Query: 17 PNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQ 54
             P+ Y        + G                P     +     AL    +
Sbjct: 3  DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER 55

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  111 bits (280), Expect = 1e-26
 Identities = 56/357 (15%), Positives = 103/357 (28%), Gaps = 84/357 (23%)

Query: 3   DLAIDTYRRAIELQ----PNFPDAYCNLANALKEKGQ---------------------PN 37
              +  +  A+++           Y  L NA                             
Sbjct: 26  RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85

Query: 38  FPDAYCNLANALKEKGQIN---VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQ 94
              A  NL N LK  G  +   V  +     +REL   +++       + GN    +  +
Sbjct: 86  EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGN---VYHAK 140

Query: 95  SVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC------PT 148
              G                +                   A + Y   L L         
Sbjct: 141 ---GKSFGCPGPQDVGEFPEEVRDALQ------------AAVDFYEENLSLVTALGDRAA 185

Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTD 202
              +  NL N     G   +A   + + L +  EF        A+SNL +     G+   
Sbjct: 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245

Query: 203 ALLHYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI------NPG 250
           A  +YK+ + +      +   A +  ++GNT   +QD + A+  + + + I        G
Sbjct: 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305

Query: 251 FADAHSNLASIHKDSG---------KRGFFIRTDLNSAYFWLLLLDAHSNLASIHKD 298
              A  +L + +   G         ++   I  ++         L A  NL+ +   
Sbjct: 306 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS---GELTARLNLSDLQMV 359

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 96.2 bits (240), Expect = 2e-21
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 16/134 (11%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVF----PEFAAAHSNLASVLQQQGKLTDALL 205
              L        + G        +  A++V        +A +S L +          AL 
Sbjct: 9   CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68

Query: 206 HYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN------PGFAD 253
           ++   + +      Q   A A  N+GNTLK + +   A+ C  R + I+       G A 
Sbjct: 69  YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128

Query: 254 AHSNLASIHKDSGK 267
           A  NL +++   GK
Sbjct: 129 ALYNLGNVYHAKGK 142

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 79.3 bits (196), Expect = 8e-16
 Identities = 47/309 (15%), Positives = 88/309 (28%), Gaps = 66/309 (21%)

Query: 3   DLAIDTYRRAIELQPNFPD------AYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN 56
           D AI   +R +++     D      A  NL N    KG+        ++    +E     
Sbjct: 104 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD-- 161

Query: 57  VLHKPPYK-----YTRELA----PGNRI-------RIGYVSSDFGNHPTSHLMQSVPGMH 100
                  +     Y   L+     G+R         +G      GN        +V   H
Sbjct: 162 -----ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR-----DAVI-AH 210

Query: 101 NKSRVEIF-CYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLC------PTHADS 152
            +  + I   +     +   +S + +  + + +   A E Y   L L          A S
Sbjct: 211 EQR-LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269

Query: 153 LNNLANIKREQGYIEEATRLYLKALEVF------PEFAAAHSNLASVLQQQGKLTDALLH 206
             +L N        E+A   +LK L +            A  +L +     G    A+  
Sbjct: 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329

Query: 207 YKEAIRIQ-------------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP---G 250
            ++ + I               + +D    +G +      I         ++       G
Sbjct: 330 AEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLG 389

Query: 251 FADAHSNLA 259
              +  N+ 
Sbjct: 390 RRHSMENME 398

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 10/97 (10%)

Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ----PSFADAYSNMGNTLKEMQDIQG 236
                  +     L + G     +  ++ A+++      + +  YS +GN    + D   
Sbjct: 6   EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65

Query: 237 ALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
           AL+ +   + +        G A A  NL +  K  G 
Sbjct: 66  ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 102

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN----PGFADAHSNLASIHKDSGK 267
             +     +  G  L +  D +  +  +  A+Q+        +  +S L + +     
Sbjct: 5   MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD 62

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  109 bits (275), Expect = 2e-26
 Identities = 53/300 (17%), Positives = 90/300 (30%), Gaps = 80/300 (26%)

Query: 5   AIDTYRRAIELQPNFPD------AYCNLANALKEKGQPNFPDA--YCNLANALKEK---- 52
           A++ +   + L     D      A  NL N LK  G  NF +A   C     +  +    
Sbjct: 62  ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG--NFDEAIVCCQRHLDISRELNDK 119

Query: 53  -GQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
            G+   L+                 +G V    G        Q         R  +    
Sbjct: 120 VGEARALYN----------------LGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL---- 159

Query: 112 LSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC------PTHADSLNNLANIKREQGY 165
                                  A + Y   L L            +  NL N     G 
Sbjct: 160 ---------------------QAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 198

Query: 166 IEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTDALLHYKEAIRI------ 213
             +A   + + L +  EF        A+SNL +     G+   A  +YK+ + +      
Sbjct: 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258

Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN------PGFADAHSNLASIHKDSGK 267
           +   A +  ++GNT   +QD + A+  + + + I        G   A  +L + +   G 
Sbjct: 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 44/178 (24%)

Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVF------P 181
           +A E ++  L L          A +  NL N  +  G  +EA     + L++        
Sbjct: 61  KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 120

Query: 182 EFAAAHSNLASVLQQQGK--------------------LTDALLHYKEAIRI------QP 215
             A A  NL +V   +GK                    L  A+  Y+E + +      + 
Sbjct: 121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA 180

Query: 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
           +   A+ N+GNT   + + + A+  + + + I            A+SNL + +   G+
Sbjct: 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 95.4 bits (238), Expect = 2e-21
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 16/134 (11%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVF----PEFAAAHSNLASVLQQQGKLTDALL 205
              L        + G        +  A++V        +A +S L +          AL 
Sbjct: 5   CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64

Query: 206 HYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN------PGFAD 253
           ++   + +      Q   A A  N+GNTLK + +   A+ C  R + I+       G A 
Sbjct: 65  YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124

Query: 254 AHSNLASIHKDSGK 267
           A  NL +++   GK
Sbjct: 125 ALYNLGNVYHAKGK 138

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 92.3 bits (230), Expect = 2e-20
 Identities = 27/176 (15%), Positives = 50/176 (28%), Gaps = 42/176 (23%)

Query: 134 EAEECYNTALRLC----PTHADSLNNLANIKREQGYIEEATRLYLKALEVF------PEF 183
                +  A+++      T +   + L N         +A   +   L +          
Sbjct: 23  AGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82

Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEM------ 231
           A A  NL + L+  G   +A++  +  + I      +   A A  N+GN           
Sbjct: 83  AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142

Query: 232 --------------QDIQGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
                           +Q A+  Y   + +            A  NL + H   G 
Sbjct: 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 198

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 43/255 (16%), Positives = 78/255 (30%), Gaps = 54/255 (21%)

Query: 3   DLAIDTYRRAIELQPNFPD------AYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN 56
           D AI   +R +++     D      A  NL N    KG+        +     ++     
Sbjct: 100 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED----- 154

Query: 57  VLHKPPYK-----YTRELA----PGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
              +   +     Y   L+     G+R   G    + GN   +H +    G    +   +
Sbjct: 155 --VRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGN---THYLL---GNFRDA---V 203

Query: 108 FCY--ALS--------PDDGTTFSYIISVLLLI-QVSEAEECYNTALRLC------PTHA 150
             +   L           +   +S + +  + + +   A E Y   L L          A
Sbjct: 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263

Query: 151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTDAL 204
            S  +L N        E+A   +LK L +  E         A  +L +     G    A+
Sbjct: 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323

Query: 205 LHYKEAIRIQPSFAD 219
              ++ + I     D
Sbjct: 324 HFAEKHLEISREVGD 338

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score =  102 bits (257), Expect = 6e-26
 Identities = 16/118 (13%), Positives = 35/118 (29%)

Query: 139 YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198
                 L     + L  L   + + G  ++A +++     +    A     L +  Q  G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHS 256
               AL  Y     +  +      +      ++ D+ GA   +  A  +        +
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 90.2 bits (224), Expect = 2e-21
 Identities = 16/95 (16%), Positives = 29/95 (30%)

Query: 173 YLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ 232
                 +  +       L     Q GK  DA   ++    +    A  +  +G   + + 
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 233 DIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
             + ALQ YS    ++        + A  H   G 
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD 101

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 3/105 (2%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
           +A++ +     L    A     L   ++  G  E+A + Y     +         + A  
Sbjct: 36  DAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95

Query: 194 LQQQGKLTDALLHYKEAIRI---QPSFADAYSNMGNTLKEMQDIQ 235
             Q G L  A   +  A  +   QP+     +  G  L+ +   +
Sbjct: 96  HLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 8/66 (12%), Positives = 15/66 (22%), Gaps = 15/66 (22%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
           A   ++    L       +  L    +  G                 N P    + A   
Sbjct: 37  AQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96

Query: 50  KEKGQI 55
            + G +
Sbjct: 97  LQLGDL 102

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 17/195 (8%), Positives = 35/195 (17%), Gaps = 79/195 (40%)

Query: 8   TYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEK 52
           T      L  +  +    L     + G+                     +  L    +  
Sbjct: 6   TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65

Query: 53  GQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY-- 110
           G              E A                                    +  Y  
Sbjct: 66  GLY------------EQA------------------------------------LQSYSY 77

Query: 111 --ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE 167
              +  ++     +     L +  +  AE  + +A  L           A          
Sbjct: 78  GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG------- 130

Query: 168 EATRLYLKALEVFPE 182
                 L+A+    +
Sbjct: 131 ----AMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
           + A+ +Y     +  N P    + A    + G  +   A     +A  
Sbjct: 69  EQALQSYSYGALMDINEPRFPFHAAECHLQLG--DLDGAESGFYSARA 114

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score =  100 bits (252), Expect = 1e-25
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
           ++  T      L    +       L     +  +   AL H + A+   P+++ A+  +G
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60

Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFAD--AHSNLASIHKDSGKRG 269
            TL+   D  GA Q +   +       D      L    +   +  
Sbjct: 61  KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 93.9 bits (234), Expect = 3e-23
 Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 2/112 (1%)

Query: 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
           +    E     L     +      L     E    + A      AL+  P ++ A   L 
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60

Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFAD--AYSNMGNTLKEMQDIQGALQCY 241
             LQ QG    A   ++  +    S  D      +   L+ +         +
Sbjct: 61  KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 62.0 bits (151), Expect = 6e-12
 Identities = 8/66 (12%), Positives = 15/66 (22%), Gaps = 15/66 (22%)

Query: 5  AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
            +     +    +       L     E  Q               P +  A+  L   L
Sbjct: 4  ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 50 KEKGQI 55
          + +G  
Sbjct: 64 QGQGDR 69

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 3/100 (3%)

Query: 111 ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
           A   D+      +        Q   A      AL   PT++ +   L    + QG    A
Sbjct: 13  AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72

Query: 170 TRLYLKALEVFPEF--AAAHSNLASVLQQQGKLTDALLHY 207
            + +   L              L   L++  +      H+
Sbjct: 73  RQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 3  DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQP 36
          D A+   R A++  P +  A+  L   L+ +G  
Sbjct: 36 DAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  100 bits (252), Expect = 2e-25
 Identities = 31/117 (26%), Positives = 50/117 (42%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
              A+ L    N + +    E A   Y KA+E+ P  A    N A+   + G    A+  
Sbjct: 9   SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQD 68

Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
            + AI I P+++ AY  MG  L  +     A+  Y +A++++P      SNL     
Sbjct: 69  CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 74.9 bits (185), Expect = 3e-16
 Identities = 18/87 (20%), Positives = 34/87 (39%)

Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
              A       +   +      A+  Y +AI + P+ A  + N      ++ +  GA+Q 
Sbjct: 9   SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQD 68

Query: 241 YSRAIQINPGFADAHSNLASIHKDSGK 267
             RAI I+P ++ A+  +        K
Sbjct: 69  CERAICIDPAYSKAYGRMGLALSSLNK 95

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 53.4 bits (129), Expect = 9e-09
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
              + A+     GN   ++++ + A+  Y +AI++NP  A    N A+ +   G 
Sbjct: 7   EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN 61

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 15/65 (23%)

Query: 5  AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
          A+  Y +AIEL P     +CN A A  + G                P +  AY  +  AL
Sbjct: 31 AVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90

Query: 50 KEKGQ 54
              +
Sbjct: 91 SSLNK 95

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 50.3 bits (121), Expect = 9e-08
 Identities = 14/66 (21%), Positives = 25/66 (37%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
            A +    A+ + P ++ +   +           EA   Y KALE+ P+     SNL   
Sbjct: 64  GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123

Query: 194 LQQQGK 199
             +  +
Sbjct: 124 ELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 15/64 (23%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
             A+    RAI + P +  AY  +  AL    +               P+      NL  
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122

Query: 48  ALKE 51
           A  +
Sbjct: 123 AELK 126

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  101 bits (255), Expect = 6e-25
 Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 25/159 (15%)

Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---- 183
           EA   +    +             +L+ +  ++R  G  + A R +L+  E+        
Sbjct: 44  EARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103

Query: 184 ---AAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQDI 234
              +A    +A+V    G L  A   Y++++        Q + A A+  +G+  ++ +++
Sbjct: 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163

Query: 235 QGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
             A Q + RA  I      +    +  + L  +      
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 95.8 bits (239), Expect = 8e-23
 Identities = 19/159 (11%), Positives = 41/159 (25%), Gaps = 25/159 (15%)

Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---- 183
           EA +      +         T + +   L  +       +EA   +    +   +     
Sbjct: 4   EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 184 --AAAHSNLASVLQQQGKLTDALLHYKEAIRI-------QPSFADAYSNMGNTLKEMQDI 234
               A   +  V +  G    A   + E   +         + +     +        D+
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123

Query: 235 QGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
            GA Q Y +++            A A   L  + +    
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 12/81 (14%)

Query: 131 QVSEAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF- 183
            ++ A + Y  +L            A +   L ++ +++  + EA + +L+A ++F E  
Sbjct: 122 DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181

Query: 184 -----AAAHSNLASVLQQQGK 199
                    + L  +      
Sbjct: 182 DSEAVNELMTRLNGLEHHHHH 202

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 95.4 bits (238), Expect = 8e-24
 Identities = 13/77 (16%), Positives = 28/77 (36%)

Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
           PE       LA    +    + AL  ++E +   P +   Y ++G   + +     A+  
Sbjct: 4   PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63

Query: 241 YSRAIQINPGFADAHSN 257
           Y++ I++          
Sbjct: 64  YAQGIEVAREEGTQKDL 80

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 86.9 bits (216), Expect = 6e-21
 Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
           P    +   LA    +      A  L+ + +E  P++   + +L  + ++  +  DA+  
Sbjct: 4   PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63

Query: 207 YKEAIRIQPSFADAYS--NMGNTLKEMQDI 234
           Y + I +            + +   + + +
Sbjct: 64  YAQGIEVAREEGTQKDLSELQDAKLKAEGL 93

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 5/54 (9%), Positives = 19/54 (35%)

Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
            P        +     +  +   AL  +   ++ +P +   + +L  +++   +
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR 56

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 2/79 (2%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS-- 188
             S A   +   +   P +  +  +L  +       ++A   Y + +EV  E        
Sbjct: 22  NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81

Query: 189 NLASVLQQQGKLTDALLHY 207
            L     +   L     H+
Sbjct: 82  ELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 8/75 (10%), Positives = 19/75 (25%), Gaps = 17/75 (22%)

Query: 2  IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAY--CN 44
             A+  +   +E  P++   Y +L    +   +                          
Sbjct: 23 ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82

Query: 45 LANALKEKGQINVLH 59
          L +A  +   +   H
Sbjct: 83 LQDAKLKAEGLEHHH 97

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 7/56 (12%), Positives = 14/56 (25%), Gaps = 15/56 (26%)

Query: 16 QPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQIN 56
           P  P     LA    +                  P++   Y +L    +   + +
Sbjct: 3  DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTD 58

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 95.2 bits (237), Expect = 3e-23
 Identities = 19/121 (15%), Positives = 38/121 (31%)

Query: 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188
           +I    +         +     D + + A     +G IEEA   +               
Sbjct: 15  VIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIM 74

Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
            LA++ Q + +   A   Y  A  +  +      + G     ++    A +C+   IQ +
Sbjct: 75  GLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134

Query: 249 P 249
            
Sbjct: 135 N 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 79.8 bits (197), Expect = 8e-18
 Identities = 10/116 (8%), Positives = 30/116 (25%), Gaps = 3/116 (2%)

Query: 155 NLANIKREQGYIEEATR---LYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAI 211
           N+   +     + +A            +  +      + A     +G++ +A + ++   
Sbjct: 4   NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63

Query: 212 RIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
                  D    +    +  +  Q A   Y+ A  +         +          
Sbjct: 64  IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA 119

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 10/89 (11%), Positives = 16/89 (17%), Gaps = 23/89 (25%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
           A   +R          D    LA   + K Q                N      +     
Sbjct: 55  AEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114

Query: 50  KEKGQIN--------VLHKPPYKYTRELA 70
                          V+     +  +  A
Sbjct: 115 LRLKAPLKAKECFELVIQHSNDEKLKIKA 143

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 7/86 (8%), Positives = 23/86 (26%), Gaps = 3/86 (3%)

Query: 105 VEIFCYALS--PDDGTTFSYIISVL-LLIQVSEAEECYNTALRLCPTHADSLNNLANIKR 161
              F +       +      + ++  +  Q  +A + Y  A  L       + +    + 
Sbjct: 56  EVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115

Query: 162 EQGYIEEATRLYLKALEVFPEFAAAH 187
                 +A   +   ++   +     
Sbjct: 116 RLKAPLKAKECFELVIQHSNDEKLKI 141

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 7/35 (20%), Positives = 8/35 (22%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPN 37
             A D Y  A  L  N      +          P 
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPL 121

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 95.0 bits (236), Expect = 4e-23
 Identities = 14/131 (10%), Positives = 37/131 (28%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
            +            +     + L +LA  + + G  E+A  ++     +    +     L
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
            +  Q  G+   A+  Y     +         +    L +  ++  A      A ++   
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 251 FADAHSNLASI 261
             +       +
Sbjct: 122 XPEFXELSTRV 132

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 82.3 bits (203), Expect = 1e-18
 Identities = 15/104 (14%), Positives = 31/104 (29%)

Query: 164 GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN 223
           G +           E+  +      +LA    Q G   DA   ++    +    +  +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           +G   + M     A+  YS    ++        + A      G+
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE 104

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 67.6 bits (165), Expect = 1e-13
 Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 3/126 (2%)

Query: 112 LSPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
           +S D      Y ++          +A   +     L    +     L   ++  G  + A
Sbjct: 16  ISSDTLEQL-YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 74

Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
              Y     +         + A  L Q G+L +A      A  +  +  +          
Sbjct: 75  IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134

Query: 230 EMQDIQ 235
            ++ I+
Sbjct: 135 MLEAIK 140

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 15/67 (22%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
           A   ++    L       +  L    +  GQ                  P    + A  L
Sbjct: 40  AHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99

Query: 50  KEKGQIN 56
            + G++ 
Sbjct: 100 LQXGELA 106

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 22/198 (11%), Positives = 42/198 (21%), Gaps = 79/198 (39%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKG---------------QPNFPDAYCNLANAL 49
              T     E+  +  +   +LA    + G                      +  L    
Sbjct: 6   GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACR 65

Query: 50  KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
           +  GQ             +LA                                    I  
Sbjct: 66  QAMGQY------------DLA------------------------------------IHS 77

Query: 110 Y----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
           Y     +   +     +    LL   +++EAE     A  L     +       +     
Sbjct: 78  YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS--- 134

Query: 165 YIEEATRLYLKALEVFPE 182
                    L+A+++  E
Sbjct: 135 --------MLEAIKLKKE 144

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANAL 49
           DLAI +Y     +    P    + A  L + G+    ++   LA  L
Sbjct: 72  DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 94.9 bits (237), Expect = 6e-23
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTDA 203
             +  NL N     G   +A   + + L +  EF        A+SNL +     G+   A
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68

Query: 204 LLHYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN------PGF 251
             +YK+ + +      +   A +  ++GNT   +QD + A+  + + + I        G 
Sbjct: 69  SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128

Query: 252 ADAHSNLASIHKDSGK 267
             A  +L + +   G 
Sbjct: 129 GRACWSLGNAYTALGN 144

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 87.6 bits (218), Expect = 2e-20
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 18/132 (13%)

Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVF------P 181
           +A   +   L +            + +NL N     G  E A+  Y K L +        
Sbjct: 27  DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86

Query: 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ------PSFADAYSNMGNTLKEMQDIQ 235
             A +  +L +          A+ ++ + + I            A  ++GN    + +  
Sbjct: 87  VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146

Query: 236 GALQCYSRAIQI 247
            A+    + ++I
Sbjct: 147 QAMHFAEKHLEI 158

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
           + +   A+ N+GNT   + + + A+  + + + I            A+SNL + +   G+
Sbjct: 5   RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 6/53 (11%)

Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVF 180
           +A + +   L +            +  +L N     G  ++A     K LE+ 
Sbjct: 107 KAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 98.0 bits (245), Expect = 7e-23
 Identities = 43/169 (25%), Positives = 63/169 (37%), Gaps = 32/169 (18%)

Query: 131 QVSEAEECYNTALRLC-----PTH---ADSLNNLANIKREQGYIEEATRLYLKALEVF-- 180
               A      AL          H   A  LN LA + R+Q   +EA  L   AL +   
Sbjct: 16  PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75

Query: 181 ------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ--------PSFADAYSNMGN 226
                 P  AA  +NLA +  ++GK  +A    K A+ I+        P  A   +N+  
Sbjct: 76  TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135

Query: 227 TLKEMQDIQGALQCYSRAIQI--------NPGFADAHSNLASIHKDSGK 267
             +     +     Y RA++I        +P  A   +NLAS +   GK
Sbjct: 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 86.8 bits (216), Expect = 5e-19
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 23/137 (16%)

Query: 134 EAEECYNTALRLC-----PTH---ADSLNNLANIKREQGYIEEATRLYLKALEVF----- 180
           E E  Y  AL +      P     A + NNLA+   +QG  ++A  LY + L        
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204

Query: 181 ----PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ------PSFADAYSNMGNTLKE 230
                +      +     + + K  D+  + +     +      P+      ++G   + 
Sbjct: 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRR 264

Query: 231 MQDIQGALQCYSRAIQI 247
              ++ A      A + 
Sbjct: 265 QGKLEAAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 81.0 bits (201), Expect = 4e-17
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 24/140 (17%)

Query: 152 SLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQGKLTDA 203
           S ++  +          A  L  +ALE          P+ A   + LA V + Q K  +A
Sbjct: 3   SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62

Query: 204 LLHYKEAIRIQ--------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI-------- 247
                +A+ I+        P+ A   +N+     +    + A     RA++I        
Sbjct: 63  AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122

Query: 248 NPGFADAHSNLASIHKDSGK 267
           +P  A   +NLA + ++ GK
Sbjct: 123 HPDVAKQLNNLALLCQNQGK 142

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 66.0 bits (162), Expect = 5e-12
 Identities = 35/267 (13%), Positives = 66/267 (24%), Gaps = 103/267 (38%)

Query: 5   AIDTYRRAIELQ-----PNFPD---AYCNLANALKEKGQ--------------------P 36
           A      A+ ++      + P       NLA    ++G+                     
Sbjct: 62  AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121

Query: 37  NFPD---AYCNLANALKEKGQINVLHKPPYK-----YTRELAPGNRIRIGYVSSDFG-NH 87
             PD      NLA   + +G+         +     Y R L     I      +  G + 
Sbjct: 122 FHPDVAKQLNNLALLCQNQGK--------AEEVEYYYRRALE----IYA----TRLGPDD 165

Query: 88  P---TSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQ--VSEAEECYNTA 142
           P    +         +N                      ++   L Q    +AE  Y   
Sbjct: 166 PNVAKT--------KNN----------------------LASCYLKQGKYQDAETLYKEI 195

Query: 143 LRLC------PTH---ADSLNNLANIKREQGYIEEATRLYLKAL--EVF----PEFAAAH 187
           L           +        +    +  +    ++          +      P      
Sbjct: 196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTL 255

Query: 188 SNLASVLQQQGKLTDALLHYKEAIRIQ 214
            +L ++ ++QGKL  A      A R +
Sbjct: 256 RSLGALYRRQGKLEAAHTLEDCASRNR 282

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 95.6 bits (238), Expect = 1e-22
 Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208
            A SL N   +  ++   + A   +          +    N+  +      +T+A   + 
Sbjct: 5   EAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFT 61

Query: 209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI-QINPGFADAHSNLASIHK 263
            +I      A AY   G    + +    A++    A+ Q+       +  L    K
Sbjct: 62  RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK 117

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 95.2 bits (237), Expect = 2e-22
 Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 19/142 (13%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
            A + ++    +   H+    N+  +      + EA + + +++      A A+     +
Sbjct: 24  GALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80

Query: 194 LQQQGKLTDALLHYKEAIR-IQPSFADAYS---------------NMGNTLKEMQDIQGA 237
             Q  K   A+   KEA+  ++ +    Y                N+     + ++ + A
Sbjct: 81  YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140

Query: 238 LQCYSRAIQINPGFADAHSNLA 259
            +  + A  +      +  + A
Sbjct: 141 EEQLALATSMKSEPRHSKIDKA 162

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
           A +  N   +   +     AL  +     +Q   +    N+G     ++++  A + ++R
Sbjct: 6   AISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62

Query: 244 AIQINPGFADAHSNLASIHKDSGK 267
           +I  +   A A+     ++  + K
Sbjct: 63  SINRDKHLAVAYFQRGMLYYQTEK 86

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 9/67 (13%), Positives = 14/67 (20%), Gaps = 16/67 (23%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ----------------PNFPDAYCNLA 46
             A   + R+I    +   AY        +  +                 N    Y  L 
Sbjct: 54  TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 113

Query: 47  NALKEKG 53
              K   
Sbjct: 114 LQFKLFA 120

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 5/67 (7%), Positives = 11/67 (16%), Gaps = 18/67 (26%)

Query: 3  DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
            A+D +               N+                         +   AY     
Sbjct: 23 KGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 79

Query: 48 ALKEKGQ 54
             +  +
Sbjct: 80 LYYQTEK 86

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 20/214 (9%), Positives = 47/214 (21%), Gaps = 67/214 (31%)

Query: 22  AYCNLANALKEKGQ------------PNFPDAYCNLANALKEKGQINVLHKPPYKYTR-- 67
           +  N      +K                      N+         +    +    +TR  
Sbjct: 8   SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMT---EAEKAFTRSI 64

Query: 68  ELAPG------NRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFS 121
                       R   G +      +                 ++    AL    G    
Sbjct: 65  NRDKHLAVAYFQR---GMLYYQTEKY--------------DLAIKDLKEALIQLRG---- 103

Query: 122 YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFP 181
                      ++  +     L+      + L N+A +  ++   ++A      A  +  
Sbjct: 104 -----------NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152

Query: 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
           E             +  K+  A+    +    +P
Sbjct: 153 E------------PRHSKIDKAMECVWKQKLYEP 174

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 98.0 bits (245), Expect = 1e-22
 Identities = 42/166 (25%), Positives = 62/166 (37%), Gaps = 32/166 (19%)

Query: 134 EAEECYNTALRLC-----PTH---ADSLNNLANIKREQGYIEEATRLYLKALEVF----- 180
            A      AL          H   A  LN LA + R+Q   ++A  L   AL +      
Sbjct: 45  VAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104

Query: 181 ---PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ--------PSFADAYSNMGNTLK 229
              P  AA  +NLA +  ++GK  +A    K A+ I+        P  A   +N+    +
Sbjct: 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164

Query: 230 EMQDIQGALQCYSRAIQIN--------PGFADAHSNLASIHKDSGK 267
                +     Y RA++I         P  A   +NLAS +   GK
Sbjct: 165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK 210

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 94.9 bits (237), Expect = 2e-21
 Identities = 38/165 (23%), Positives = 55/165 (33%), Gaps = 31/165 (18%)

Query: 134 EAEECYNTALRLC-----PTH---ADSLNNLANIKREQGYIEEATRLYLKALEVF----- 180
           EAE     AL +        H   A  LNNLA + + QG  EE    Y +ALE++     
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188

Query: 181 ---PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ---------PSFADAYSNMGNTL 228
              P  A   +NLAS   +QGK   A   YKE +                  + +     
Sbjct: 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE 248

Query: 229 KEMQDIQGALQCYSRAIQIN------PGFADAHSNLASIHKDSGK 267
           +     +                   P       NL ++++  GK
Sbjct: 249 ECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK 293

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 90.7 bits (226), Expect = 4e-20
 Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 24/145 (16%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQG 198
           P    +L+NL      QG  E A  L  +ALE          P+ A   + LA V + Q 
Sbjct: 24  PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN 83

Query: 199 KLTDALLHYKEAIRIQ--------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI--- 247
           K  DA     +A+ I+        P+ A   +N+     +    + A     RA++I   
Sbjct: 84  KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143

Query: 248 -----NPGFADAHSNLASIHKDSGK 267
                +P  A   +NLA + ++ GK
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGK 168

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 15/96 (15%)

Query: 134 EAEECYNTALRLC---------PTHADSLNNLANIKREQGYIEEATRLYLKAL--EVF-- 180
           +AE  Y   L              +     +    +  +G  ++ T         +    
Sbjct: 213 QAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272

Query: 181 --PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ 214
             P       NL ++ ++QGK   A    + A+R +
Sbjct: 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 92.3 bits (230), Expect = 2e-22
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
              A +  +L N   +Q   E+A   Y KA+E+ P     ++N A+V  ++ K  + +  
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64

Query: 207 YKEAIRIQPS-------FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
            ++A+ +           A A S  GN  ++  D+  A+Q + R++       +    + 
Sbjct: 65  CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123

Query: 260 SIHK 263
            + K
Sbjct: 124 ELEK 127

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
            + A A  +L +   +Q     A +HY +AI + PS    Y+N      E +     +Q 
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64

Query: 241 YSRAIQINP-------GFADAHSNLASIHKDSGK 267
             +A+++           A A S   +  +    
Sbjct: 65  CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQND 98

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 59.6 bits (145), Expect = 5e-11
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
               A A  ++GN   + +D + A   Y +AI+++P     ++N A+++ +  K
Sbjct: 4   MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK 57

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 22/74 (29%)

Query: 3  DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ----------------------PNFPD 40
          + A   Y +AIEL P+    Y N A    E+ +                           
Sbjct: 25 EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84

Query: 41 AYCNLANALKEKGQ 54
          A     NA +++  
Sbjct: 85 AMSRAGNAFQKQND 98

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 89.4 bits (222), Expect = 2e-21
 Identities = 13/105 (12%), Positives = 32/105 (30%)

Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208
           + ++         +   + EA   +    +  PE   A  +L     +  K   A++   
Sbjct: 16  YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75

Query: 209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
            A  + P     ++ +  +     +   AL      +   P +  
Sbjct: 76  HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 86.4 bits (214), Expect = 2e-20
 Identities = 15/82 (18%), Positives = 33/82 (40%)

Query: 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI 245
                   + +   L +A L ++   + +P   +A+ ++G T  E +    A+   + A 
Sbjct: 19  NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78

Query: 246 QINPGFADAHSNLASIHKDSGK 267
            ++P     H+ LA  H +   
Sbjct: 79  MLDPKDIAVHAALAVSHTNEHN 100

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 79.8 bits (197), Expect = 4e-18
 Identities = 16/89 (17%), Positives = 31/89 (34%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
            ++EA   +    +  P   ++  +L   + E      A      A  + P+  A H+ L
Sbjct: 32  NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFAD 219
           A     +     AL   +  +  QP +  
Sbjct: 92  AVSHTNEHNANAALASLRAWLLSQPQYEQ 120

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 15/70 (21%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           +  A   +    + +P   +A+ +L     E  +               P     +  LA
Sbjct: 33  LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92

Query: 47  NALKEKGQIN 56
            +   +   N
Sbjct: 93  VSHTNEHNAN 102

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK-----RGFF 271
           + +     G ++ ++ ++  A   +    Q  P   +A  +L     ++ K         
Sbjct: 16  YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75

Query: 272 IRTDLNSAYFWLLLLDAHSNLASIHKD 298
               L+        +  H+ LA  H +
Sbjct: 76  HARMLDPKD-----IAVHAALAVSHTN 97

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
            LAI     A  L P     +  LA +   +   N   A  +L   L 
Sbjct: 68  GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN--AALASLRAWLL 113

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 91.8 bits (228), Expect = 4e-20
 Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 25/159 (15%)

Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVF------- 180
            A + +  A             A+    ++           +     +A E++       
Sbjct: 121 SAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180

Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQDI 234
                 HS  A+      +  DA+ H+++A  +               N+G         
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240

Query: 235 QGALQCYSRAIQIN------PGFADAHSNLASIHKDSGK 267
           + A+  + RAI +       P    A+  +  IH   GK
Sbjct: 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 69.5 bits (170), Expect = 8e-13
 Identities = 31/270 (11%), Positives = 75/270 (27%), Gaps = 44/270 (16%)

Query: 3   DLAIDTYRRAIELQPNFPD------AYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN 56
             AI  +++A        D       +  ++ +     Q  F   Y   A  + ++    
Sbjct: 120 LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE---- 175

Query: 57  VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTS--HLMQS---VPGMHNKSRVEIFCYA 111
                   Y   L             D   +  +  H  ++            +    Y 
Sbjct: 176 -----HEAYNIRLLQ-CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229

Query: 112 LSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC------PTHADSLNNLANIKREQGY 165
           +    G   +         Q  +A   +  A+ +       P+   +   +  I  + G 
Sbjct: 230 I----GLCKNS------QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279

Query: 166 IEEATRLYLKALEVFPEF----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQ---PSFA 218
           I++A   + K +    +       +       L   G   +A+  + + +  +       
Sbjct: 280 IDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLE 339

Query: 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
           D   ++     E ++ Q A   + +  Q+ 
Sbjct: 340 DFAIDVAKYYHERKNFQKASAYFLKVEQVR 369

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 18/138 (13%), Positives = 41/138 (29%), Gaps = 19/138 (13%)

Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTD 202
           H   L  L  +++ +   +      L  ++              +         Q +   
Sbjct: 62  HNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLS 121

Query: 203 ALLHYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI-------NP 249
           A+  +K+A         +   A+ +  M  +   M+    ++    +A +I       N 
Sbjct: 122 AIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181

Query: 250 GFADAHSNLASIHKDSGK 267
                HS  A+   D  +
Sbjct: 182 RLLQCHSLFATNFLDLKQ 199

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 85.4 bits (212), Expect = 5e-20
 Identities = 27/128 (21%), Positives = 57/128 (44%)

Query: 136 EECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ 195
              ++    + P  A  + N  N   ++G   +A + Y +A++  P+ A  +SN A+   
Sbjct: 2   GHHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT 61

Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
           +  +   AL   +E I+++P+F   Y+     L+ M+D   A+  Y +A+ ++    +A 
Sbjct: 62  KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAA 121

Query: 256 SNLASIHK 263
                   
Sbjct: 122 DGYQRCMM 129

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 62.6 bits (153), Expect = 6e-12
 Identities = 24/95 (25%), Positives = 40/95 (42%)

Query: 173 YLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ 232
           +     + P+ A    N  +   Q+G    A+ HY EAI+  P  A  YSN      ++ 
Sbjct: 5   HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64

Query: 233 DIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           + Q AL+     IQ+ P F   ++  A+  +    
Sbjct: 65  EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD 99

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 15/65 (23%)

Query: 5  AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
          A+  Y  AI+  P     Y N A    +  +               P F   Y   A AL
Sbjct: 35 AMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94

Query: 50 KEKGQ 54
          +    
Sbjct: 95 EAMKD 99

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 12/64 (18%), Positives = 20/64 (31%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
            A +     ++L PT        A          +A  +Y KAL++      A       
Sbjct: 68  LALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127

Query: 194 LQQQ 197
           +  Q
Sbjct: 128 MMAQ 131

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 85.7 bits (212), Expect = 1e-19
 Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 3/134 (2%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
                 +     +R  P +++    L      Q     +   Y +AL++  E A  ++ L
Sbjct: 25  NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84

Query: 191 ASVLQQQGK---LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247
           A+VL  Q              +A+ +  +   A   + +      +   A++ + + + +
Sbjct: 85  ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144

Query: 248 NPGFADAHSNLASI 261
           N    +    + SI
Sbjct: 145 NSPRINRTQLVESI 158

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 66.4 bits (162), Expect = 6e-13
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 7/132 (5%)

Query: 139 YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198
           +           D L+  A     Q   E   +     +   P+ +   + L      Q 
Sbjct: 3   WQAVRAEYQRQRDPLHQFA----SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQN 58

Query: 199 KLTDALLHYKEAIRIQPSFADAYSNMGNTL---KEMQDIQGALQCYSRAIQINPGFADAH 255
             +++LL Y++A++++   A+ Y+ +   L                 +A+ ++     A 
Sbjct: 59  DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118

Query: 256 SNLASIHKDSGK 267
             LAS       
Sbjct: 119 MLLASDAFMQAN 130

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 58.0 bits (140), Expect = 6e-10
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 181 PEFAAAHSNLASVLQQ------QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI 234
           P++ A  +              Q      L   ++ IR  P  ++ ++ +G       D 
Sbjct: 1   PKWQAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDY 60

Query: 235 QGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFF 271
             +L  Y +A+Q+    A+ ++ LA++      +   
Sbjct: 61  SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 18/70 (25%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ------------------PNFPDAYCN 44
             ++  YR+A++L+    + Y  LA  L  +                     N   A   
Sbjct: 61  SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML 120

Query: 45  LANALKEKGQ 54
           LA+    +  
Sbjct: 121 LASDAFMQAN 130

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFAD-AYSNMGNTLKEMQDIQGALQCYSRAIQI 247
                L  QG + +AL   +E ++ +P   D AY  MGN  +++ D Q AL  Y  AI++
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 248 NPGFADAHSN 257
           NP      + 
Sbjct: 65  NPDSPALQAR 74

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 155 NLANIKREQGYIEEATRLYLKALEVFPEFAA-AHSNLASVLQQQGKLTDALLHYKEAIRI 213
                   QG IE A +   + L+  P     A+  + +  ++ G    AL +Y+ AI +
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
            P      +         + +   L  Y++ +         H
Sbjct: 65  NPDSPALQAR--------KMVMDILNFYNKDMYNQLEHHHHH 98

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 131 QVSEAEECYNTALRLCPTHADSL-NNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN 189
            +  A +     L+  P   D     + N  R+ G  ++A   Y  A+E+ P+  A  + 
Sbjct: 15  DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA- 73

Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
                  +  + D L  Y + +  Q      +
Sbjct: 74  -------RKMVMDILNFYNKDMYNQLEHHHHH 98

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 18/67 (26%)

Query: 2  IDLAIDTYRRAIELQPNFPD-AYCNLANALKEKGQ---------------PNFPD--AYC 43
          I+ A+      ++ +P   D AY  + NA ++ G                P+ P   A  
Sbjct: 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75

Query: 44 NLANALK 50
           + + L 
Sbjct: 76 MVMDILN 82

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 89.5 bits (222), Expect = 2e-19
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 24/158 (15%)

Query: 134 EAEECYNTALRLCPT------HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---- 183
           EA   Y  A +  P        A+    +A           +    L+AL+++       
Sbjct: 119 EAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178

Query: 184 ---AAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQDI 234
                +   +A           AL H + A+ +          A +  N+ N+     D 
Sbjct: 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238

Query: 235 QGALQCYSRAIQIN-----PGFADAHSNLASIHKDSGK 267
           Q A++ + +A +++              L+     +G+
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ 276

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 79.9 bits (197), Expect = 4e-16
 Identities = 40/289 (13%), Positives = 73/289 (25%), Gaps = 79/289 (27%)

Query: 3   DLAIDTYRRAIELQPNFPD------AYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN 56
             AI  YR A +  P   D       +  +A A     Q +    +   A  + +     
Sbjct: 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH--- 174

Query: 57  VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDD 116
                   Y+      +   I     DF ++                             
Sbjct: 175 ------PLYSIRTI-QSLFVIAGNYDDFKHY----------------------------- 198

Query: 117 GTTFSYIISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEAT 170
                            +A      AL L          A SL N+AN     G  + A 
Sbjct: 199 ----------------DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242

Query: 171 RLYLKALEVFPE-----FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD-AYSNM 224
             + KA +V  E            L+  L + G+   A    +E +    + +   Y  +
Sbjct: 243 EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302

Query: 225 GNTLKEMQDIQGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
              L+ +       +     +        +        + A++ + S  
Sbjct: 303 FLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCH 351

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 17/171 (9%), Positives = 42/171 (24%), Gaps = 34/171 (19%)

Query: 131 QVSEAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF- 183
            V +AE       +               + +    +      E  + Y     V     
Sbjct: 27  SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86

Query: 184 --------------AAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSN 223
                           +          Q +  +A+ +Y+EA +           A+ +  
Sbjct: 87  TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFK 146

Query: 224 MGNTLKEMQDIQGALQCYSRAIQI-------NPGFADAHSNLASIHKDSGK 267
           +      M+    ++    +A+ I       +     +   +A  + D   
Sbjct: 147 VAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH 197

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 17/145 (11%), Positives = 40/145 (27%), Gaps = 28/145 (19%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVF------PEFAAAHSNLASVLQ------QQ 197
              +N    + R Q  + +A  L  +  +         +    +S +    Q      + 
Sbjct: 13  GVKINEWYKMIR-QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEP 71

Query: 198 GKLTDALLHYKEAIRIQPSFADAYSNM---------GNTLKEMQDIQGALQCYSRAIQIN 248
           GK         E +    +     + +         G    + ++   A+  Y  A +  
Sbjct: 72  GKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKEL 131

Query: 249 ------PGFADAHSNLASIHKDSGK 267
                    A+ H  +A  +    +
Sbjct: 132 PFVSDDIEKAEFHFKVAEAYYHMKQ 156

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 81.7 bits (202), Expect = 3e-18
 Identities = 25/105 (23%), Positives = 44/105 (41%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           +D L +  N    +    +A  LY +AL + P      SN A+     G+   A    + 
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA 254
           A  + P ++ A+S +G    +M D +GA + Y + I+        
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 60.1 bits (146), Expect = 8e-11
 Identities = 14/72 (19%), Positives = 27/72 (37%)

Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
            + + + A+  Y +A+ I P+     SN           + A +    A  ++P ++ A 
Sbjct: 23  ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW 82

Query: 256 SNLASIHKDSGK 267
           S L     D   
Sbjct: 83  SRLGLARFDMAD 94

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 15/65 (23%)

Query: 5  AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
          AID Y +A+ + P  P    N A A    GQ               P +  A+  L  A 
Sbjct: 30 AIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89

Query: 50 KEKGQ 54
           +   
Sbjct: 90 FDMAD 94

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 9/107 (8%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH--SNLA 191
           +A E    A  + P ++ + + L   + +    + A   Y K +E      +      L 
Sbjct: 63  KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122

Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL 238
           +  ++  +                   D  +        M D+    
Sbjct: 123 TTKRKIEE-------ANRGAEPPADDVDDAAGASRGAGGMPDLSSLA 162

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
           +D   + GN     ++   A+  Y++A+ I P      SN A
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRA 52

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A     L N   ++   + A + Y KA E+ P      +N A+V  ++G         ++
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 210 AIRIQP-------SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
           AI +           A AY+ +GN+  + +  + A+  Y++++  + 
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCY 241
           + A     L +   ++     AL HY +A  + P+     +N      E  D     +  
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 242 SRAIQINPG-------FADAHSNLASIHKDSGK 267
            +AI++           A A++ + + +    K
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEK 94

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 22/74 (29%)

Query: 3  DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ----------------------PNFPD 40
          D A+  Y +A EL P       N A    EKG                            
Sbjct: 21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80

Query: 41 AYCNLANALKEKGQ 54
          AY  + N+  ++ +
Sbjct: 81 AYARIGNSYFKEEK 94

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 82.6 bits (204), Expect = 2e-17
 Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 20/142 (14%)

Query: 131 QVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF- 183
           ++ EA +    A  +   +      A +L+    +  E   + +A  LY +A  VF    
Sbjct: 91  RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAVHLYQQAAAVFENEE 149

Query: 184 -----AAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQ 232
                A      + +L +Q K  +A    ++   +       P+                
Sbjct: 150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA 209

Query: 233 DIQGALQCYSRAIQINPGFADA 254
           D   A +C   +  I PGF+ +
Sbjct: 210 DYVAAQKCVRESYSI-PGFSGS 230

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 82.6 bits (204), Expect = 2e-17
 Identities = 21/157 (13%), Positives = 45/157 (28%), Gaps = 23/157 (14%)

Query: 134 EAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVF-----PE 182
           +A++ Y         +      A +      + ++   + EA +   KA  ++     P+
Sbjct: 54  QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113

Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ------PSFADAYSNMGNTLKEMQDIQG 236
            AA   + A  L +   L+ A+  Y++A  +          A+        L   Q    
Sbjct: 114 TAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE 173

Query: 237 ALQCYSRAIQIN------PGFADAHSNLASIHKDSGK 267
           A     +   +       P           +      
Sbjct: 174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 28/165 (16%)

Query: 131 QVSEAEECYNTA--------LRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEV 179
           ++SEA E    A        ++  P +   A      A   +    +E+A   YL+  E 
Sbjct: 6   KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEA 65

Query: 180 FPEF------AAAHSNLASVLQQQGKLTDALLHYKEAIRI-----QPSFADAYSNMGNTL 228
                     A A      +L+   ++ +A+ + ++A  +      P  A    +    L
Sbjct: 66  HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL 125

Query: 229 KEMQDIQGALQCYSRAIQINPGF------ADAHSNLASIHKDSGK 267
            E  D+  A+  Y +A  +          A+     + +     K
Sbjct: 126 MEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK 170

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 59.9 bits (145), Expect = 7e-10
 Identities = 27/231 (11%), Positives = 58/231 (25%), Gaps = 66/231 (28%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
           + A D Y +  E   N      + A A            +      LK+  ++    +  
Sbjct: 53  EQAKDAYLQEAEAHANNRS-LFHAAKA------------FEQAGMMLKDLQRMPEAVQ-- 97

Query: 63  YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDD-GTTFS 121
                                                + +    ++    +PD       
Sbjct: 98  -------------------------------------YIEKASVMYVENGTPDTAAMALD 120

Query: 122 YIISVLLLIQVSEAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLK 175
               ++  + +S+A   Y  A  +          A+ +   + +   Q   +EA     K
Sbjct: 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180

Query: 176 ALEVF------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA 220
              ++      P           V   +     A    +E+  I P F+ +
Sbjct: 181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGS 230

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 23/125 (18%)

Query: 163 QGYIEEATRLYLKALEV-----------FPEFAAAHSNLASVLQQQGKLTDALLHYKEAI 211
              I EA     KA +            +   A+ ++  A   +   +L  A   Y +  
Sbjct: 4   AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA 63

Query: 212 RIQPSF------ADAYSNMGNTLKEMQDIQGALQCYSRAIQI------NPGFADAHSNLA 259
               +       A A+   G  LK++Q +  A+Q   +A  +          A A     
Sbjct: 64  EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123

Query: 260 SIHKD 264
            + + 
Sbjct: 124 KLMEP 128

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 17/89 (19%)

Query: 196 QQGKLTDALLHYKEA--------IRIQPSF---ADAYSNMGNTLKEMQDIQGALQCYSRA 244
              K+++A  H  +A        ++ +P +   A  Y+      K  + ++ A   Y + 
Sbjct: 3   AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE 62

Query: 245 IQINP------GFADAHSNLASIHKDSGK 267
            + +         A A      + KD  +
Sbjct: 63  AEAHANNRSLFHAAKAFEQAGMMLKDLQR 91

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 21/119 (17%)

Query: 134 EAEECYNTALRLC---PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
           +A   Y  A+         A+    L +  R  G   +A  +    ++ FP   A     
Sbjct: 8   QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
           A VL   G+    +    + I                          +Q Y +AI    
Sbjct: 68  AMVLYNLGRYEQGVELLLKIIAETSD------------------DETIQSYKQAILFYA 108

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 3/90 (3%)

Query: 163 QGYIEEATRLYLKALEVF---PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD 219
            G   +A   Y KA+       + A  +  L S  +  G+   A       ++  P+   
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
                   L  +   +  ++   + I    
Sbjct: 63  LRVFYAMVLYNLGRYEQGVELLLKIIAETS 92

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 197 QGKLTDALLHYKEAIRI---QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
            G    A+ +Y++AI         A+ Y  +G+T + + + + A    +  ++  P    
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 254 AHSNLASIHKDSGK 267
                A +  + G+
Sbjct: 63  LRVFYAMVLYNLGR 76

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 18/68 (26%)

Query: 5  AIDTYRRAIEL---QPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
          A+  Y +AI       +  + Y  L +  +  G+               PN        A
Sbjct: 9  AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68

Query: 47 NALKEKGQ 54
            L   G+
Sbjct: 69 MVLYNLGR 76

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 8/50 (16%), Positives = 12/50 (24%), Gaps = 2/50 (4%)

Query: 3  DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEK 52
            A       ++  PN        A  L   G+         L   + E 
Sbjct: 44 RKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE--QGVELLLKIIAET 91

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 83.6 bits (206), Expect = 3e-17
 Identities = 17/159 (10%), Positives = 49/159 (30%), Gaps = 2/159 (1%)

Query: 111 ALSPDDGTTFSYIISVLLLIQVS-EAEECYNTALRLCPTHADSLNNLANIKRE-QGYIEE 168
             S      + Y  +VL   + S  A +    A+ L   +    +    + +  Q  + E
Sbjct: 91  IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE 150

Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
                   +E  P+      +   +++     +  L    + +        A+ +    +
Sbjct: 151 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 210

Query: 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           +E +     LQ   + ++ +       +    +  ++  
Sbjct: 211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 81.7 bits (201), Expect = 9e-17
 Identities = 24/204 (11%), Positives = 64/204 (31%), Gaps = 16/204 (7%)

Query: 112 LSPDDGTTFSYIISVL--LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
           L+  + T + +   +L  L   + E        +   P +    ++   +        + 
Sbjct: 126 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE 185

Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
                  L    +   A  +   V+Q+     + L +  + ++        ++     + 
Sbjct: 186 LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 245

Query: 230 EM------QDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG--------KRGFFIRTD 275
                     ++  +Q     I++ P    A + L  I +D G         +   ++  
Sbjct: 246 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPS 305

Query: 276 LNSAYFWLLLLDAHSNLASIHKDS 299
            +S Y    L+D + ++     D+
Sbjct: 306 HSSPYLIAFLVDIYEDMLENQCDN 329

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 70.5 bits (172), Expect = 4e-13
 Identities = 15/127 (11%), Positives = 41/127 (32%), Gaps = 1/127 (0%)

Query: 142 ALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK-L 200
            +       D  +    + +     E A +L   A+E+             +L+   K L
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS 260
            + + +    I  QP     + +    ++ ++D    L+  +  +  +     A  +   
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208

Query: 261 IHKDSGK 267
           + ++   
Sbjct: 209 VIQEFKL 215

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 66.6 bits (162), Expect = 7e-12
 Identities = 27/257 (10%), Positives = 73/257 (28%), Gaps = 44/257 (17%)

Query: 12  AIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAP 71
            I     F D Y      L+   +     A+    +A     ++N  +   + + R L  
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDER--SERAFKLTRDA----IELNAANYTVWHFRRVL-- 140

Query: 72  GNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGTTFSYIISVL 127
                               L + +         E+          P +   + +   ++
Sbjct: 141 -----------------LKSLQKDLHE-------EMNYITAIIEEQPKNYQVWHHRRVLV 176

Query: 128 -LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA 186
             L   S+  E     L     +  +  +   + +E    +   +   + L+      + 
Sbjct: 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSV 236

Query: 187 HSNLASVLQQQGKLTD------ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
            +    V+       D       + +  E I++ P    A++ +   L++   +      
Sbjct: 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNL 295

Query: 241 YSRAIQINPGFADAHSN 257
            ++ + + P  +  +  
Sbjct: 296 LNQLLDLQPSHSSPYLI 312

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 51.2 bits (122), Expect = 6e-07
 Identities = 27/203 (13%), Positives = 65/203 (32%), Gaps = 25/203 (12%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEK------GQINVL 58
            ++     IE QP     + +    ++    P+    +         K       +  V+
Sbjct: 151 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 210

Query: 59  HKPPYKYTRELAPGNRIRIGYVSSDFGNHPT-SHLMQSVPGMHNKSRVEIFCYALS---- 113
            +    +  EL   ++     +  D  N+   +     +      +   +    +     
Sbjct: 211 QEFK-LWDNELQYVDQ----LLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265

Query: 114 -----PDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADS--LNNLANIKRE--QG 164
                P + + ++Y+  +L    +S+     N  L L P+H+    +  L +I  +  + 
Sbjct: 266 MIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLEN 325

Query: 165 YIEEATRLYLKALEVFPEFAAAH 187
             +    +  KALE+    A   
Sbjct: 326 QCDNKEDILNKALELCEILAKEK 348

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 76.1 bits (188), Expect = 8e-17
 Identities = 19/114 (16%), Positives = 45/114 (39%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
            + L    N     G I++A + Y +A+++ P     +SN ++   ++G    A     +
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
            + ++P +   YS     L+ +   + A + Y   ++           L ++  
Sbjct: 64  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 15/102 (14%)

Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
           +E+   L  K  +                   G + DAL  Y EAI++ P     YSN  
Sbjct: 1   MEQVNELKEKGNKAL---------------SVGNIDDALQCYSEAIKLDPHNHVLYSNRS 45

Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
               +  D Q A +   + + + P +   +S  A+  +   +
Sbjct: 46  AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 15/65 (23%)

Query: 5  AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
          A+  Y  AI+L P+    Y N + A  +KG                P++   Y   A AL
Sbjct: 23 ALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82

Query: 50 KEKGQ 54
          +   +
Sbjct: 83 EFLNR 87

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 79.0 bits (194), Expect = 3e-16
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 4/146 (2%)

Query: 127 LLLIQVSEAEECYNTALRLC--PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA 184
           L+   +   ++  + ALR        + +     I  +   ++ A +   K  +   +  
Sbjct: 105 LMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT 164

Query: 185 AAHSNLASVLQQQG--KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYS 242
                 A V    G  KL DA   ++E            +            + A     
Sbjct: 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224

Query: 243 RAIQINPGFADAHSNLASIHKDSGKR 268
            A+  + G  +   NL  + +  GK 
Sbjct: 225 EALDKDSGHPETLINLVVLSQHLGKP 250

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 75.9 bits (186), Expect = 3e-15
 Identities = 28/255 (10%), Positives = 71/255 (27%), Gaps = 16/255 (6%)

Query: 5   AIDTYRRAIELQP-NFPDAYCNLANALKEKGQPN-----FPDAYCNLANALKEKGQINVL 58
            I+  +R     P    +    L  A   + +          +      A++   +    
Sbjct: 18  CINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLAS 77

Query: 59  HKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGT 118
           H        EL       +         + T  LM +    ++++           D   
Sbjct: 78  HSRRDAIVAELDREMSRSVDV------TNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131

Query: 119 TFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGY--IEEATRLYLK 175
             +  + +LL + ++  A +              +    A +    G   +++A  ++ +
Sbjct: 132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191

Query: 176 ALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ 235
             +         +  A+    QG+   A    +EA+       +   N+    + +    
Sbjct: 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP 251

Query: 236 GALQCY-SRAIQINP 249
                Y S+    + 
Sbjct: 252 EVTNRYLSQLKDAHR 266

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 74.2 bits (183), Expect = 3e-16
 Identities = 21/109 (19%), Positives = 40/109 (36%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A+           +     A + Y + ++  PE A  +SN A+ L +     +A+    +
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
           AI   P+F  AY         +++   AL+    A   +    +  S  
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 112

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 17/72 (23%), Positives = 31/72 (43%)

Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
            +    +A+  Y E I+  P  A  YSN    L ++     A+   ++AI+ +P F  A+
Sbjct: 16  TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 75

Query: 256 SNLASIHKDSGK 267
              A+      +
Sbjct: 76  IRKATAQIAVKE 87

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 15/67 (22%)

Query: 3  DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
            A+  Y   I+  P     Y N A AL +                  PNF  AY   A 
Sbjct: 21 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80

Query: 48 ALKEKGQ 54
          A     +
Sbjct: 81 AQIAVKE 87

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
           A+     G       D   A++ Y+  I+  P  A  +SN A
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 45

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 74.2 bits (183), Expect = 4e-16
 Identities = 30/117 (25%), Positives = 50/117 (42%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
           P  A    N  N   ++G    A R Y +A++  PE A  +SN A+ L +  +   AL  
Sbjct: 10  PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD 69

Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
               IR+   F   Y      L  M++   A + Y  A+Q++P   +A   + +  +
Sbjct: 70  CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 22/93 (23%), Positives = 39/93 (41%)

Query: 175 KALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI 234
           +   + PE A    N  +   ++G    A+ HY EA++  P  A  YSN    L ++ + 
Sbjct: 4   RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63

Query: 235 QGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
           Q AL      I+++  F   +   A+      +
Sbjct: 64  QRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE 96

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 75.1 bits (185), Expect = 5e-16
 Identities = 25/121 (20%), Positives = 46/121 (38%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A+ L   AN   +    E A + Y +A+E+ P  A  + N +    +      AL     
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269
           AI +   +   Y     +   +   + AL+ Y   +++ P   DA       +K   ++ 
Sbjct: 73  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132

Query: 270 F 270
           F
Sbjct: 133 F 133

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 72.1 bits (176), Expect = 1e-13
 Identities = 22/197 (11%), Positives = 58/197 (29%), Gaps = 26/197 (13%)

Query: 125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNL-----ANIKREQGYIEEATRLYLKALEV 179
           S+   +     +    T  ++ P     L N        +  +   +  A+ L  + ++ 
Sbjct: 169 SLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS 228

Query: 180 FPEFAAAHSNLASVLQQ--------QGKLTDALLHYKEAIRI--QPSFADAYSNMGNTLK 229
            PEF  A +  A V           + +L          + +    + +  Y     +  
Sbjct: 229 SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSAL 288

Query: 230 EMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK---------RGFFIRTDLNSAY 280
                  + Q  +  I +   +   +  L  +++  G            F +R    +  
Sbjct: 289 VKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPG-ANTL 346

Query: 281 FWLLLLDAHSNLASIHK 297
           +W+      +++  +  
Sbjct: 347 YWIENGIFQTSVPYVVP 363

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 69.2 bits (168), Expect = 2e-12
 Identities = 20/126 (15%), Positives = 49/126 (38%), Gaps = 3/126 (2%)

Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
           +  +   ++   +C      L +L +I R +    +A   Y  A ++ P     ++ LA 
Sbjct: 138 AIVKPQSSSCSYIC---QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAI 194

Query: 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
           +   +G     + +Y  +I ++  F  A +N+   L +  + +  ++           F 
Sbjct: 195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFI 254

Query: 253 DAHSNL 258
             H ++
Sbjct: 255 KFHGHV 260

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 57.3 bits (137), Expect = 9e-09
 Identities = 22/87 (25%), Positives = 36/87 (41%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
           Q S+AE  Y  A +L P++    N LA +   +G        Y +++ V   F AA +NL
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSF 217
              L +  +  D +           +F
Sbjct: 227 QKALSKALESRDEVKTKWGVSDFIKAF 253

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 56.1 bits (134), Expect = 2e-08
 Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 5/164 (3%)

Query: 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
            + L  I  +Q +     +    +     +    H  L  + + + + + A  +Y+ A +
Sbjct: 123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVH--LGDIARYRNQTSQAESYYRHAAQ 180

Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFI 272
           + PS    Y+ +        D    +  Y R+I +   F  A +NL      + +    +
Sbjct: 181 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 240

Query: 273 RTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVGFD 316
           +T    + F    +  H ++   +    +  L  +  +    F 
Sbjct: 241 KTKWGVSDFIKAFIKFHGHV---YLSKSLEKLSPLREKLEEQFK 281

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 21/103 (20%), Positives = 35/103 (33%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
              A  L    N         EA   Y +A+   P  A  ++N A    +  +   AL  
Sbjct: 6   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 65

Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
            + A+ +      A+  +G    EM+    A+    RA  +  
Sbjct: 66  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 13/108 (12%)

Query: 134 EAEECYNTALRLCPTHADSLNN--LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
           EA  CY  A+   P  A    N  L  +K +Q   E+A     +ALE+  +   AH  L 
Sbjct: 27  EAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--PEQALADCRRALELDGQSVKAHFFLG 84

Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239
               +     +A+ + + A  +              L    DI  AL+
Sbjct: 85  QCQLEMESYDEAIANLQRAYSLAKE---------QRLNFGDDIPSALR 123

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 18/72 (25%), Positives = 27/72 (37%)

Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
              K  +A   Y  AI   P  A  Y+N      +MQ  + AL    RA++++     AH
Sbjct: 21  VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 80

Query: 256 SNLASIHKDSGK 267
             L     +   
Sbjct: 81  FFLGQCQLEMES 92

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 20/50 (40%)

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
              ++   A      GN L   +    A  CY RAI  NP  A  ++N A
Sbjct: 1   GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRA 50

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 62.8 bits (153), Expect = 6e-12
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 167 EEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN 223
             A   Y +AL +       A  H N A+   +      A     +AI        A   
Sbjct: 45  GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104

Query: 224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
               L+++  +  A+    R + + P        L +I  
Sbjct: 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 196 QQGKLTDALLHYKEAIRIQPSFAD---AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
           + G    AL  Y +A+ +  +  D    + N      +++D   A    S+AI+ + G  
Sbjct: 40  KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV 99

Query: 253 DAHSNLASIHKDSGK 267
            A    +   +  G+
Sbjct: 100 KALYRRSQALEKLGR 114

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 66.5 bits (162), Expect = 8e-12
 Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 24/161 (14%)

Query: 131 QVSEAEECYNTALRLCP-----THADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-- 183
              EAE     AL   P     +   + + L  +   +G +  +  L  +  ++  +   
Sbjct: 29  NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88

Query: 184 ----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQ--------PSFADAYSNMGNTLKEM 231
                 +    + +L  QG L  A    ++A ++         P            L   
Sbjct: 89  WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 148

Query: 232 QDIQGALQCYSRAIQINPGFADA-----HSNLASIHKDSGK 267
             +  A       I++   +         + L       G 
Sbjct: 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 189

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 61.5 bits (149), Expect = 3e-10
 Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 19/138 (13%)

Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPE-----FAAAHSNLASVLQQQGKLTDA 203
           HA+     A +    G  +EA RL   ALE  P         A S L  VL  +G+LT +
Sbjct: 13  HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 72

Query: 204 LLHYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI--------NP 249
           L   ++  ++            +       L     +Q A +   +A Q+         P
Sbjct: 73  LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132

Query: 250 GFADAHSNLASIHKDSGK 267
                    A +     +
Sbjct: 133 MHEFLVRIRAQLLWAWAR 150

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 18/151 (11%), Positives = 44/151 (29%), Gaps = 19/151 (12%)

Query: 131 QVSEAEECYNTALRLCPTHAD------SLNNLANIKREQGYIEEATRLYLKALEVFPEF- 183
           +++ +        ++   H        SL   + I   QG+++ A     KA ++  E  
Sbjct: 68  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 127

Query: 184 -------AAAHSNLASVLQQQGKLTDALLHYKEAIRI-----QPSFADAYSNMGNTLKEM 231
                         A +L    +L +A    +  I +             + +       
Sbjct: 128 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187

Query: 232 QDIQGALQCYSRAIQINPGFADAHSNLASIH 262
            D+  A    +R   +          +++ +
Sbjct: 188 GDLDNARSQLNRLENLLGNGKYHSDWISNAN 218

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 15/160 (9%), Positives = 41/160 (25%), Gaps = 22/160 (13%)

Query: 131 QVSEAEECYNTALRLC-----PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-- 183
           ++ EAE    + + +            L  L      +G ++ A     +   +      
Sbjct: 150 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 209

Query: 184 -----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQ----PSFADAYSNMGNTLKEMQDI 234
                + A+       Q  G    A    +   + +          + N+      + + 
Sbjct: 210 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF 269

Query: 235 QGALQCYSRAIQI------NPGFADAHSNLASIHKDSGKR 268
           + A        +                 L  ++  +G++
Sbjct: 270 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 16/119 (13%)

Query: 131 QVSEAEECYNTALRL----CPTHADSLNNLANIKREQGYIEEATRLYLKALEVF------ 180
             + A        +              N+A  +   G  E A  +  +  E        
Sbjct: 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 289

Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI-QP-----SFADAYSNMGNTLKEMQD 233
            +       L  +  Q G+ +DA     +A+++         F      M   L+++  
Sbjct: 290 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQ 348

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 15/154 (9%), Positives = 32/154 (20%), Gaps = 23/154 (14%)

Query: 131 QVSEAEECYNTALRLCPTH-------ADSLNNLANIKREQGYIEEATRLYLKALEV---- 179
            +  A    N    L           +++        +  G    A        +     
Sbjct: 189 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 248

Query: 180 FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQD 233
                    N+A      G+   A +  +E                    +     +   
Sbjct: 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308

Query: 234 IQGALQCYSRAIQI-NPG-----FADAHSNLASI 261
              A +    A+++ N       F      +A  
Sbjct: 309 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 342

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 1/97 (1%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
            +      N   +QG   EA   Y + +   P+    +SN A  L + G+ T A+   ++
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ 246
            +R   +            + ++  QGA+      + 
Sbjct: 64  GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVV 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 13/68 (19%), Positives = 26/68 (38%)

Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
           +QG   +A+  Y + I  QP     YSN    L ++ +   A+Q   + ++         
Sbjct: 16  KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75

Query: 256 SNLASIHK 263
                 ++
Sbjct: 76  IRSKLQYR 83

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
            +     GN+L +    + A+ CY + I   P     +SN A
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKA 45

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 15/61 (24%)

Query: 5  AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
          A+  Y + I  QP  P  Y N A AL + G+                             
Sbjct: 23 AVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82

Query: 50 K 50
          +
Sbjct: 83 R 83

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 21/100 (21%), Positives = 35/100 (35%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A  L    N         EA   Y +A+   P  A  ++N A    +  +   AL   + 
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
           A+ +      A+  +G    EM+    A+    RA  +  
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 53.0 bits (127), Expect = 9e-08
 Identities = 19/90 (21%), Positives = 32/90 (35%)

Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
            EA  CY  A+   P  A    N A    +    E+A     +ALE+  +   AH  L  
Sbjct: 21  PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80

Query: 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYS 222
              +     +A+ + + A  +       + 
Sbjct: 81  CQLEMESYDEAIANLQRAYSLAKEQRLNFG 110

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 18/72 (25%), Positives = 27/72 (37%)

Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
              K  +A   Y  AI   P  A  Y+N      +MQ  + AL    RA++++     AH
Sbjct: 16  VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75

Query: 256 SNLASIHKDSGK 267
             L     +   
Sbjct: 76  FFLGQCQLEMES 87

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 23/132 (17%)

Query: 155 NLANIKREQG-------YIEEATRLYLKALEVFPEF----------------AAAHSNLA 191
             A   +E+G        I EA   Y +AL+ F                    + + NLA
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95

Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
           +   +      A+ H  + ++I  +   A   +G        ++ A +   +A  +NP  
Sbjct: 96  TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155

Query: 252 ADAHSNLASIHK 263
            D  ++      
Sbjct: 156 LDIRNSYELCVN 167

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 60.8 bits (147), Expect = 3e-10
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 20/141 (14%)

Query: 134 EAEECYNTALRLCPTH------ADSLNNLANIKR-EQGYIEEATRLYLKALEVFPEF--- 183
            A +    A+++          A+    L  I   +     +A   Y  A E + +    
Sbjct: 95  NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154

Query: 184 ---AAAHSNLASVLQQQGKLTDALLHYKEAIRI-------QPSFADAYSNMGNTLKEMQD 233
                     A +    G+  +A   Y + I+        Q S  D +   G       D
Sbjct: 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD 214

Query: 234 IQGALQCYSRAIQINPGFADA 254
              A +        +P FAD+
Sbjct: 215 AVAAARTLQEGQSEDPNFADS 235

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 23/158 (14%)

Query: 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
           +S+  E    A +     +  +   +    +    EEA  L ++A              A
Sbjct: 1   ISDPVELLKRAEKKGVPSSGFMKLFSG--SDSYKFEEAADLCVQA--------------A 44

Query: 192 SVLQQQGKLTDALLHYKEAIRIQ------PSFADAYSNMGNTLKEMQDIQGALQCYSRAI 245
           ++ + + +L  A   + +A   Q          + Y       K   +   A+     AI
Sbjct: 45  TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104

Query: 246 QINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWL 283
           QI           A+   + G+       D   A    
Sbjct: 105 QIFTHRGQ-FRRGANFKFELGEILENDLHDYAKAIDCY 141

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 22/131 (16%)

Query: 155 NLANIKREQG-------YIEEATRLYLKALEVFPEF---------------AAAHSNLAS 192
             + I +E+G         ++A   Y K +                      A+H NLA 
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204

Query: 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
              +    + A+    +A+ +  +     S  G     + D + A   + + +Q+ P   
Sbjct: 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264

Query: 253 DAHSNLASIHK 263
            A + LA   +
Sbjct: 265 AAKTQLAVCQQ 275

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 55.9 bits (134), Expect = 2e-09
 Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 21/135 (15%)

Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGK----------LTDALLHYKEAIRIQPS 216
           E+  +      +  P  A   +    VL +  +          + +A+  ++EA+ I P 
Sbjct: 19  EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78

Query: 217 FADAYSNMGNTL-----------KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265
             +A   +GN             +   +   A Q + +A+   P       +L    K  
Sbjct: 79  KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 138

Query: 266 GKRGFFIRTDLNSAY 280
                  +  L  ++
Sbjct: 139 QLHAEAYKQGLGGSH 153

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 9/89 (10%), Positives = 13/89 (14%), Gaps = 25/89 (28%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQ-------------------------PNFP 39
                    +  P   D        L E  Q                         P   
Sbjct: 21  IRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80

Query: 40  DAYCNLANALKEKGQINVLHKPPYKYTRE 68
           +A   + NA      +             
Sbjct: 81  EAVWCIGNAYTSFAFLTPDETEAKHNFDL 109

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 4e-09
 Identities = 64/417 (15%), Positives = 123/417 (29%), Gaps = 112/417 (26%)

Query: 51  EKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY 110
           E G+        Y+Y +++             +F       + +S+  +  +    I   
Sbjct: 10  ETGEHQ------YQY-KDILSVFEDAF---VDNFDCKDVQDMPKSI--LSKEEIDHII-- 55

Query: 111 ALSPDDGTTFSYIISVLLLIQVSEAEECYNTALR------LCPTHADSLNNLANIKREQG 164
            +S D  +    +   LL  Q    ++     LR      + P   +        +    
Sbjct: 56  -MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM--- 111

Query: 165 YIEEATRLYLKALEVFPEF----AAAHSNLASVLQQQ--------------GK--LT-DA 203
           YIE+  RLY    +VF ++       +  L   L +               GK  +  D 
Sbjct: 112 YIEQRDRLY-NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 204 LLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ--CYSRAIQINPGFADAHSNLASI 261
            L YK  ++ +  F   + N+ N       ++  LQ   Y    QI+P +     + ++I
Sbjct: 171 CLSYK--VQCKMDFKIFWLNLKNCNSPETVLE-MLQKLLY----QIDPNWTSRSDHSSNI 223

Query: 262 --HKDSGK---RGFFIRTDLNSAYFWLLLLD--AHSNLAS----------IHKDSVVMSL 304
                S +   R         +    LL+L    ++   +            +   V   
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 305 L---QIIHEFIVGFDLTFYLFQVMWLGYPGTSGASYMDYIITD----AV-TSPLALASQY 356
           L      H  +    +T    +V  L         Y+D    D     + T+P  L S  
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSL------LLKYLDCRPQDLPREVLTTNPRRL-SII 333

Query: 357 SEKLAFMPDT------YFIGDHNQMF---------PHLKERFIVSGKYSEKLAFMPD 398
           +E +     T              +             ++ F       ++L+  P 
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-------DRLSVFPP 383

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-05
 Identities = 66/475 (13%), Positives = 135/475 (28%), Gaps = 137/475 (28%)

Query: 4   LAIDTYRRAIELQPNFPD-------AYCNLANALKEKGQ-------PNF---PDAYCNL- 45
           +A+D    + ++Q              CN    + E  Q       PN+    D   N+ 
Sbjct: 166 VALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 46  --ANALKEKGQINVLHKPPYK---------YTRELA----PGNRI----RIGYVSSDFGN 86
              ++++ + +  +L   PY+            +         +I    R   V+     
Sbjct: 225 LRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 87  HPTSH--LMQSVPGMHNKSRVEIFCYALS------PDDGTTFSYIISVLLLIQVSEAEEC 138
             T+H  L      +       +    L       P +  T     +   L  ++E+   
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT----TNPRRLSIIAES--- 336

Query: 139 YNTALRLCPTHADSLNNLANIKREQGYIE---------EATRLYLKALEVFPEFAAAHSN 189
               +R      D+  ++ N  +    IE         E  +++   L VFP  A   + 
Sbjct: 337 ----IRDGLATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFPPSAHIPTI 390

Query: 190 LASVLQQQGKLTD-----ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA 244
           L S++      +D       LH    +  QP           +   +  I   L+     
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK---------ESTISIPSIYLELKVKLEN 441

Query: 245 IQINPGFADAHSNLASIHKDSGKRGFF---IRTDLNSAYFWLLLLDAHSNLASIHKDSVV 301
                     H ++  +   +  + F    +       YF+  +   H      H     
Sbjct: 442 E------YALHRSI--VDHYNIPKTFDSDDLIPPYLDQYFYSHI--GH------H----- 480

Query: 302 MSLLQIIHEF----IVGFDLTFYLFQVMWLGYPGTSGAS----------YMDYIITDAVT 347
           +  ++         +V  D  F   ++        +  S          Y  YI  +   
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN--- 537

Query: 348 SPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFI 402
            P     +Y   +  + D  F+    +     K   ++      ++A M +   I
Sbjct: 538 DP-----KYERLVNAILD--FLPKIEENLICSKYTDLL------RIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 68/563 (12%), Positives = 139/563 (24%), Gaps = 181/563 (32%)

Query: 195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL--KEMQDIQGALQCYSRAIQINPGFA 252
           + Q +  D L  +++A        D      + L  +E+  I  +    S  ++      
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR------ 66

Query: 253 DAHSNLASIHKDSGKRGF--FIRTDLNSAYFWL----------------LLLDAHSNLAS 294
                L        +     F+   L   Y +L                + ++    L +
Sbjct: 67  -----LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 295 ----IHKDSV-----VMSL---LQII--HEFIV-----GF-----------DLTFYL--- 321
                 K +V      + L   L  +   + ++     G                     
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 322 FQVMWLGYPGTSGASYMDYIITDAVTSPL-ALASQYSEKLAFMPDTYFIGDHNQMFPHLK 380
           F++ WL           +    + V   L  L  Q        P+     DH+       
Sbjct: 182 FKIFWL----NLK----NCNSPETVLEMLQKLLYQ------IDPNWTSRSDHSSNIKLRI 227

Query: 381 E-------RFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMI--------- 424
                   R + S  Y        +   +  + Q        F +S K ++         
Sbjct: 228 HSIQAELRRLLKSKPY-------ENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTD 279

Query: 425 -ASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ 483
             S    T ++       L  ++        + +    +    Q   LP +       N 
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEV-------KSLLLKYLDCRPQD--LPREV---LTTNP 327

Query: 484 L--------YKIDPSTLQMWVNVL-----KAVPNSILWLLKFPAVGEANISRPLFRPRLR 530
                     +   +T   W +V        + +S+  L       E    R +F     
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-------EPAEYRKMFD---- 376

Query: 531 PSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ 590
                S+              FP    A+I      L      +++ +V   +  V    
Sbjct: 377 ---RLSV--------------FPP--SAHI--PTILLS-----LIWFDV--IKSDVM--V 406

Query: 591 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR--THK 648
           + +      L                 +++P   L  +V       L    ++      K
Sbjct: 407 VVNKLHKYSLVEKQPKES--------TISIPSIYLELKVKLENEYALH-RSIVDHYNIPK 457

Query: 649 EYQDIAIRLGTDRDYCEKALLYH 671
            +    +       Y    + +H
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHH 480

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 5e-04
 Identities = 48/412 (11%), Positives = 115/412 (27%), Gaps = 101/412 (24%)

Query: 307 IIHEFIVGF--DLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMP 364
           I+  F   F  +      Q                 I++      + ++         + 
Sbjct: 21  ILSVFEDAFVDNFDCKDVQ------------DMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 365 DT----------YFIGD-HNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMF---P 410
            T           F+ +     +  L        K  ++   M    +I   ++++    
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPI----KTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 411 HLKERFIVSGKTMIASGQVQTSV------NGIVLQNGLATNQTNTKTATGEEVPQSIVIT 464
              +  +   +  +   +++ ++        +++   L +     KT    +V  S  + 
Sbjct: 125 VFAKYNVSRLQPYL---KLRQALLELRPAKNVLIDGVLGSG----KTWVALDVCLSYKVQ 177

Query: 465 SRQQYGL----------PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPA 514
            +  + +          PE  +       LY+IDP+      +    +   I  +     
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSR-SDHSSNIKLRIHSI----- 230

Query: 515 VGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK-FPAVGEANIQATAQALGLDQHR 573
             +A + R L + +   +    +VL  V N+       F      N+            +
Sbjct: 231 --QAELRR-LLKSKPYENCL--LVLLNVQNA--KAWNAF------NLSC----------K 267

Query: 574 ILF----SNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLA-SR 628
           IL       V           ++       L      S+ + +       LP E L  + 
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 629 VAASQLATLGCPELIARTHKEYQDIAI-RLGTDRDYCEKAL-------LYHE 672
              S +A     + +A     ++ +   +L T  +     L       ++  
Sbjct: 328 RRLSIIAES-IRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 20/148 (13%)

Query: 120 FSYIISVLLLIQVSEAEECYNTALRLCPTHADS------LNNLANIKREQGYIEEATRLY 173
           +     VL  +            L    T  D        N +ANI  E GY+++   L+
Sbjct: 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLF 178

Query: 174 LKALEVFPEF-------AAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADA 220
            + L+                 N A  L    +  ++L    +AI I             
Sbjct: 179 EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238

Query: 221 YSNMGNTLKEM-QDIQGALQCYSRAIQI 247
           Y   G  L+++  +       Y +A   
Sbjct: 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 55.0 bits (132), Expect = 4e-08
 Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 17/164 (10%)

Query: 117 GTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA 176
                Y + V+   +  E +   +  +      AD      N   ++  +EEA + Y  A
Sbjct: 146 MADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMA 205

Query: 177 LEVFPEFA-----------------AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD 219
           +    +                     H N+A+ L +  +  +A+ H    +  +     
Sbjct: 206 IAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK 265

Query: 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
           A    G    E+  +  A   + +A +  P        L ++ +
Sbjct: 266 ALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 51.8 bits (123), Expect = 5e-08
 Identities = 18/144 (12%), Positives = 41/144 (28%), Gaps = 25/144 (17%)

Query: 150 ADSLNNL--ANIKREQGYIEEATRLYLKALEVFPEF------------AAAHSNLASVLQ 195
             +   L  A  +   G  +EA     +A+E+                A  H+ LA  L 
Sbjct: 9   VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 68

Query: 196 QQGKLTDALLHYKEAIR-------IQPSFADAYS----NMGNTLKEMQDIQGALQCYSRA 244
                 +AL    +A+        +       +     +    L  +     A+  + + 
Sbjct: 69  GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128

Query: 245 IQINPGFADAHSNLASIHKDSGKR 268
           +++             + + +  R
Sbjct: 129 VEMIEERKGETPGKERMMEVAIDR 152

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 25/121 (20%), Positives = 46/121 (38%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A+ L   AN   +    E A + Y +A+E+ P  A  + N +    +      AL     
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269
           AI +   +   Y     +   +   + AL+ Y   +++ P   DA       +K   ++ 
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125

Query: 270 F 270
           F
Sbjct: 126 F 126

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 17/134 (12%), Positives = 35/134 (26%), Gaps = 25/134 (18%)

Query: 155 NLANIKREQG-------YIEEATRLYLKALEVFPEF------------------AAAHSN 189
                 R++G         +EA   Y  AL                           ++N
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68

Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
           ++      G L +A     E ++ + +   A             +  A +     ++ +P
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

Query: 250 GFADAHSNLASIHK 263
             A   +    I  
Sbjct: 129 AAASVVAREMKIVT 142

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 19/169 (11%), Positives = 52/169 (30%), Gaps = 10/169 (5%)

Query: 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF-PEFAAAH 187
           L+ +    + +  A +     +  L    ++   + + +EA  +Y +A+     +    +
Sbjct: 43  LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 102

Query: 188 SNLASVLQQQGKLTDALLHYKEAIRIQPS-FADAYSNMGNTLKEMQDIQGALQCYSRAIQ 246
              A   + + K       Y   + I+       Y       +  + I+     + +A +
Sbjct: 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162

Query: 247 INPGFADAHSNLASIHKDSGK-----RGFF---IRTDLNSAYFWLLLLD 287
                   +   A +     K        F   ++   +   + L  +D
Sbjct: 163 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID 211

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 22/257 (8%), Positives = 64/257 (24%), Gaps = 31/257 (12%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYK 64
            +  Y + + +  + PD +   A  L++  +        N A    ++   N+  +    
Sbjct: 35  VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE-AANIYER---- 89

Query: 65  YTRELAPGN-RIRIGYVSS--DFGNHPTSH-LMQSVPGMHNKSRVEIFCYALSPDDGTTF 120
               L   N  +   Y         +   H +   +  + +     ++            
Sbjct: 90  AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYI----------- 138

Query: 121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIK-REQGYIEEATRLYLKALEV 179
            Y+        +      +  A     T        A ++         A +++   L+ 
Sbjct: 139 QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 198

Query: 180 FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP-------SFADAYSNMGNTLKEMQ 232
           + +           L    +  +  + ++  +                +         + 
Sbjct: 199 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF---ESNIG 255

Query: 233 DIQGALQCYSRAIQINP 249
           D+   L+   R      
Sbjct: 256 DLASILKVEKRRFTAFR 272

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 18/123 (14%), Positives = 39/123 (31%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
           + ++A     T      +  D     A+   E    E A  L       + + +      
Sbjct: 21  EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA 80

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
              L QQ   +  L   ++ +   P   +    +     ++   + AL+     +++N G
Sbjct: 81  KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140

Query: 251 FAD 253
             D
Sbjct: 141 AQD 143

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 14/122 (11%), Positives = 31/122 (25%)

Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
            +  + L    +   +QG   +A  +     +            A  L +  +   A   
Sbjct: 3   ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQEL 62

Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
                      +         L +       L+   + +  NP   +    LA  +   G
Sbjct: 63  LATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVG 122

Query: 267 KR 268
           + 
Sbjct: 123 RD 124

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 16/130 (12%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKA---LEVFPEFA-------------AAHSNLASV 193
           ++ L N+ N   +    E A + Y K    +E     A             +   N+ + 
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282

Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
             +      A+    EA+ I PS   A        + +++   AL    +A +I P    
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342

Query: 254 AHSNLASIHK 263
             + L  + +
Sbjct: 343 IQAELLKVKQ 352

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 4/157 (2%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
           Q+ +A E    A++  P  A   ++   +    G  E A    ++++++FPE+    S L
Sbjct: 12  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 71

Query: 191 ASVLQQQGKLTDALLHYKEAIRI-QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
             +++      D       A  + +           N     QD +   +   +  ++  
Sbjct: 72  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131

Query: 250 GFADAHSNL--ASIHKDSGKRGFFIRT-DLNSAYFWL 283
                 ++   + +     + G +I        YF +
Sbjct: 132 EKGFLANDTSFSDVRDIDDRLGGYIELFSTAGNYFLV 168

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
                 +G+L  AL    EAI+  P  A   S+    L    D + A +   ++I++ P 
Sbjct: 4   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63

Query: 251 FADAHSNLASIHKDSGKRGFFIRTDLNSAYF-----WL-LLLDAHSNLASIHKDSVVMSL 304
           +    S L  + K +  R  F +    +            L+  + ++ S   + V    
Sbjct: 64  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 123

Query: 305 LQI 307
           LQI
Sbjct: 124 LQI 126

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	673
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	100.0
3q3e_A	631	HMW1C-like glycosyltransferase; N-glycosylation; 2	100.0
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.91
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.9
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.9
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.89
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.87
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.87
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.87
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.86
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.86
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.86
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.86
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.85
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.85
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.85
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.85
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.85
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.84
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.84
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.84
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.83
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.82
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.82
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.81
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.81
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.8
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.8
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.8
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.78
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.77
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.76
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.75
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.74
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.74
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.74
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.74
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.74
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.73
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.73
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.73
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.72
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.71
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.71
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.7
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.7
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.69
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.69
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.67
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.67
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.67
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.66
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.66
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.66
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.66
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.65
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.65
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.64
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.64
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.63
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.63
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.63
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.63
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.63
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.62
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.62
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.61
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.61
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.61
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.61
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.6
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.6
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.59
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.59
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.59
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.59
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.58
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.58
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.58
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.58
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.58
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.57
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.57
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.56
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.56
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.56
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.56
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.56
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.55
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.54
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.54
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.54
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.54
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.53
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.53
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.52
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.52
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.51
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.51
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.51
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.51
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.51
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.49
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.49
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.48
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.48
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.48
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.47
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.47
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.47
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.47
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.47
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.45
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.45
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.44
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.44
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.43
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.43
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.43
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.43
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.43
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.43
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.43
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.43
2bfw_A	200	GLGA glycogen synthase; glycosyltransferase family	99.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.42
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.42
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.42
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.41
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.41
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.41
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.41
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.4
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.4
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.4
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.39
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.39
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.38
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.37
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.35
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.35
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.35
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.35
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.35
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.34
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.34
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.33
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.31
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.31
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.3
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.3
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.3
3c48_A	438	Predicted glycosyltransferases; retaining glycosyl	99.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.3
3okp_A	394	GDP-mannose-dependent alpha-(1-6)-phosphatidylino	99.29
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.28
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.28
2x6q_A	416	Trehalose-synthase TRET; biosynthetic protein; 2.2	99.28
3oy2_A	413	Glycosyltransferase B736L; rossmann fold, GDP-mann	99.27
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.27
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.27
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.27
2f9f_A	177	First mannosyl transferase (WBAZ-1); alpha-beta pr	99.23
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.22
3fro_A	439	GLGA glycogen synthase; glycosyltransferase family	99.19
2jjm_A	394	Glycosyl transferase, group 1 family protein; anth	99.19
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.16
2iw1_A	374	Lipopolysaccharide core biosynthesis protein RFAG;	99.16
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.16
3qhp_A	166	Type 1 capsular polysaccharide biosynthesis prote	99.16
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.16
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.13
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.13
2gek_A	406	Phosphatidylinositol mannosyltransferase (PIMA); G	99.13
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.09
2r60_A	499	Glycosyl transferase, group 1; rossmann-fold; 1.80	99.09
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.06
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.05
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.03
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.0
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.99
3s28_A	816	Sucrose synthase 1; glycosyltransferase, sucrose m	98.99
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.98
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.95
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.94
2qzs_A	485	Glycogen synthase; glycosyl-transferase, GT-B fold	98.94
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.94
1rzu_A	485	Glycogen synthase 1; glycosyl-transferase, GT-B fo	98.93
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.85
1vgv_A	384	UDP-N-acetylglucosamine 2-epimerase; structural ge	98.83
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.81
2iuy_A	342	Avigt4, glycosyltransferase; antibiotics, family G	98.81
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.81
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.77
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.72
3beo_A	375	UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a	98.72
3vue_A	536	GBSS-I, granule-bound starch synthase 1, chloropla	98.66
2x0d_A	413	WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge	98.66
1f0k_A	364	MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe	98.65
2xci_A	374	KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci	98.65
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.62
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.6
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.55
1v4v_A	376	UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t	98.53
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.5
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.5
3dzc_A	396	UDP-N-acetylglucosamine 2-epimerase; structural ge	98.5
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.49
2o6l_A	170	UDP-glucuronosyltransferase 2B7; drug metabolism,	98.49
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.48
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.47
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.47
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.45
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.42
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.42
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.41
1uqt_A	482	Alpha, alpha-trehalose-phosphate synthase; glycosy	98.39
3tsa_A	391	SPNG, NDP-rhamnosyltransferase; glycosyltransferas	98.34
2hy7_A	406	Glucuronosyltransferase GUMK; glycosyltransferases	98.33
2iyf_A	430	OLED, oleandomycin glycosyltransferase; antibiotic	98.26
3otg_A	412	CALG1; calicheamicin, TDP, structural genomics, PS	98.25
3t5t_A	496	Putative glycosyltransferase; GTB fold, pseudoglyc	98.25
3ot5_A	403	UDP-N-acetylglucosamine 2-epimerase; structural ge	98.23
3ia7_A	402	CALG4; glycosysltransferase, calicheamicin, enediy	98.23
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.21
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.19
4fzr_A	398	SSFS6; structural genomics, PSI-biology, protein s	98.12
2p6p_A	384	Glycosyl transferase; X-RAY-diffraction,urdamycina	98.09
3rsc_A	415	CALG2; TDP, enediyne, structural genomics, PSI-2,	98.08
4hwg_A	385	UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc	97.97
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.96
3s2u_A	365	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape	97.95
2iya_A	424	OLEI, oleandomycin glycosyltransferase; carbohydra	97.92
3oti_A	398	CALG3; calicheamicin, TDP, structural genomics, PS	97.85
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.83
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.79
1iir_A	415	Glycosyltransferase GTFB; rossmann fold; 1.80A {Am	97.78
2yjn_A	441	ERYCIII, glycosyltransferase; transferase, cytochr	97.71
1rrv_A	416	Glycosyltransferase GTFD; GT-B, glycosyltransferas	97.7
3rhz_A	339	GTF3, nucleotide sugar synthetase-like protein; gl	97.64
4amg_A	400	Snogd; transferase, polyketide biosynthesis, GT1 f	97.57
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.57
3h4t_A	404	Glycosyltransferase GTFA, glycosyltransferase; van	97.49
2c1x_A	456	UDP-glucose flavonoid 3-O glycosyltransferase; WIN	97.46
3hbf_A	454	Flavonoid 3-O-glucosyltransferase; glycosyltransfe	97.43
2pq6_A	482	UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl	97.42
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.33
2acv_A	463	Triterpene UDP-glucosyl transferase UGT71G1; glyco	97.31
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.3
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.24
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.22
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.99
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.96
2vch_A	480	Hydroquinone glucosyltransferase; glycosyltransfer	96.93
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.85
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.82
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.52
3nb0_A	725	Glycogen [starch] synthase isoform 2; glycogen syn	96.43
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.83
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.75
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.28
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.17
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.9
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.77
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.64
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.28
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.09
1psw_A	348	ADP-heptose LPS heptosyltransferase II; structural	93.97
3hbm_A	282	UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je	93.87
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.84
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.07
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.47
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.31
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.13
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	91.08
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.49
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	90.42
3tov_A	349	Glycosyl transferase family 9; structural genomics	90.17
2gt1_A	326	Lipopolysaccharide heptosyltransferase-1; GT-B fol	90.09
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	89.59
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.15
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	88.55
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	87.94
2jzc_A	224	UDP-N-acetylglucosamine transferase subunit ALG13;	85.37
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	85.07
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	82.52
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	81.12

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=100.00  E-value=3.8e-89  Score=791.23  Aligned_cols=521  Identities=50%  Similarity=0.780  Sum_probs=429.7

Q ss_pred             cCCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17691        112 LSPDDGTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL  190 (673)
Q Consensus       112 l~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  190 (673)
                      ..|+++.++..++. +..+|++++|+.+|+++++++|++..+++++|.+|.++|++++|+.+|+++++++|++..+|+++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45888888866655 55699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG-  269 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~-  269 (673)
                      |.++..+|++++|+++|+++++++|+++.+++++|.+|.++|++++|+++|++|++++|++..++.+||.++..+|+++ 
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             --------cccC--------------------CCCHHH------------------------------------------
Q psy17691        270 --------FFIR--------------------TDLNSA------------------------------------------  279 (673)
Q Consensus       270 --------l~l~--------------------p~~~~a------------------------------------------  279 (673)
                              +++.                    +.....                                          
T Consensus       164 A~~~~~kal~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~aia~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~klrIGyv  243 (723)
T 4gyw_A          164 YDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV  243 (723)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSSCTTGGGGSCCCHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCCSSTTTTTCEEEEEE
T ss_pred             HHHHHHHHHHhChhHHhhccCcccchhhhhhhhcCHHHHHHHHHHHHHhhhhhhhcccCccccCccccccccccceeeee
Confidence                    1111                    111111                                          


Q ss_pred             ----------HHHHHHHhhccccc----cc--cc-------------chhhhhhh---------hh-----hhhhh--cc
Q psy17691        280 ----------YFWLLLLDAHSNLA----SI--HK-------------DSVVMSLL---------QI-----IHEFI--VG  314 (673)
Q Consensus       280 ----------~~~l~~~~~~~~~~----~~--~~-------------~~~~~~l~---------~~-----~DiLv--~G  314 (673)
                                ++..++...|++-.    .+  ..             .++|.+++         +.     |||||  +|
T Consensus       244 S~df~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~i~~d~iDIlidl~g  323 (723)
T 4gyw_A          244 SSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNG  323 (723)
T ss_dssp             ESCSSSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHHSSEEEEGGGCCCHHHHHHHHHHTTCSEEEESCS
T ss_pred             chhhccCcHHHHHHHHHHHhccCceeEEEEEcCCCCccHHHHHHHHhhccccccccCCcHHHHHHHHHhccceeEEeccC
Confidence                      11111111111100    00  00             02232222         11     49999  66


Q ss_pred             ---------ccccchhhhhhhhcCCCCCCCcccccccccCccCchhhhHHHHhhhccCCCccccccccccCchhhhhhhh
Q psy17691        315 ---------FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIV  385 (673)
Q Consensus       315 ---------fa~rpApvQ~~~lGyp~ttG~~~~Dy~l~d~~~~p~~~~~~ysE~l~~lp~~~~~~~~~~~~~~~~~~~~~  385 (673)
                               |++|||||||+|||||+|||+++|||+|+|++++|++.+.+||||++|||++|+|+++...+|.+......
T Consensus       324 ~t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P~~~~~~ysEklirLP~~~~~~d~~~~~p~~~~~~~~  403 (723)
T 4gyw_A          324 YTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVI  403 (723)
T ss_dssp             SBTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSCGGGGGGCSSEEEECSSCSCCCCHHHHCGGGSSCEEE
T ss_pred             CCCCCcchhhhcCCCCceeeeccCCCCCCCCcCCEEEeCCCCCCchhhhcceeeeeeCCCccccCCcccccccccccccc
Confidence                     99999999999999999999999999999999999999999999999999999999998877765432111


Q ss_pred             ccc-----cccc-----------cccCCCccccc----------CC---CCccchh-hhhhhhccccccccccceeeecC
Q psy17691        386 SGK-----YSEK-----------LAFMPDTYFIG----------DH---NQMFPHL-KERFIVSGKTMIASGQVQTSVNG  435 (673)
Q Consensus       386 ~~~-----~~~~-----------~~~~~~~~~~~----------~~---~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~  435 (673)
                      ...     |++.           ....|+..+..          +.   ....|.+ .+.+..+..++...|++...++|
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~g  483 (723)
T 4gyw_A          404 DFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQITING  483 (723)
T ss_dssp             CCC---CCCSSSEEEECTTHHHHHHTSSSCEEEC-----------------CEEEECSSHHHHHHHHHHHHTCCEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            000     0000           00000000000          00   0000000 01111223456677888999999


Q ss_pred             ceeccCccccccccccccCcccCcccccccccccCCCCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCc
Q psy17691        436 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAV  515 (673)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~  515 (673)
                      +.+.+|+.+.+.+......++.|.+....+|+.+|||++.|||||||+++||+|+++++|++||++||+|+|||+.    
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~R~~~gLp~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~----  559 (723)
T 4gyw_A          484 FSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLR----  559 (723)
T ss_dssp             EEEEETTCHHHHCHHHHHTSSCCCSEEEEEGGGGTCCTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEE----
T ss_pred             cccccccccccccccccccccccccccccchhhcCCCCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEe----
Confidence            9999999999999888888899988888999999999999999999999999999999999999999999999987    


Q ss_pred             CCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEE
Q psy17691        516 GEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC  595 (673)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~  595 (673)
                                                          ++...+++++++++++||+++||+|.++++.++|++.|+.+||+
T Consensus       560 ------------------------------------~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~~Di~  603 (723)
T 4gyw_A          560 ------------------------------------FPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVC  603 (723)
T ss_dssp             ------------------------------------TTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGGCSEE
T ss_pred             ------------------------------------CcHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCCCeEE
Confidence                                                24556789999999999999999999999999999999999999


Q ss_pred             ecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhhc
Q psy17691        596 LDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYHE  672 (673)
Q Consensus       596 Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~~  672 (673)
                      |||||||||||++|||||||||||+.|++|+||+|+|+|+++||+||||.|.+|||++|++||+|+++|+++|.++.
T Consensus       604 LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~~~~~Y~~~a~~la~d~~~l~~lr~~l~  680 (723)
T 4gyw_A          604 LDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVW  680 (723)
T ss_dssp             ECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             eCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998763

>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A

Probab=100.00  E-value=2.2e-55  Score=485.19  Aligned_cols=237  Identities=16%  Similarity=0.176  Sum_probs=206.1

Q ss_pred             hhhhh--cc---------ccccchhhhhhhhcCCCCCCCcccccccccCccCchhhhHHHHhhhccCCCccccccccccC
Q psy17691        308 IHEFI--VG---------FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMF  376 (673)
Q Consensus       308 ~DiLv--~G---------fa~rpApvQ~~~lGyp~ttG~~~~Dy~l~d~~~~p~~~~~~ysE~l~~lp~~~~~~~~~~~~  376 (673)
                      +||||  +|         +++|||||||+|||||+|||+++|||+|+|+...|  .+.+|+|+++|||++|+|+++... 
T Consensus       350 IDILVdL~g~t~~~~i~~aa~RpAPVQvs~lGyp~TTGl~~iDY~i~D~~~~~--~~~~ysEklirLP~~~~~~~p~~~-  426 (631)
T 3q3e_A          350 AAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPYVPSAL-  426 (631)
T ss_dssp             CSEEEESCCSSSHHHHHHTTSCCSSEEEEECSSCSCCCCTTCCEEEEEGGGCC--CGGGCSSEEEEECTTSSCCCCCTT-
T ss_pred             CCEEEECCCCCCchhHHHHhCCCchheEeccCCCcccCcccCCEEEeCCCCCC--cccCceeeEEECCCCccccCCccc-
Confidence            49999  55         56999999999999999999999999999997665  478999999999999998542100 


Q ss_pred             chhhhhhhhccccccccccCCCcccccCCCCccchhhhhhhhccccccccccceeeecCceeccCccccccccccccCcc
Q psy17691        377 PHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEE  456 (673)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (673)
                                                                                                      
T Consensus       427 --------------------------------------------------------------------------------  426 (631)
T 3q3e_A          427 --------------------------------------------------------------------------------  426 (631)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCcccccccccccCCCCC--cEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCcc
Q psy17691        457 VPQSIVITSRQQYGLPED--AIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSAS  534 (673)
Q Consensus       457 ~~~~~~~~~r~~~~l~~~--~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (673)
                            .+.|..+|++++  .|||||||++.|++|+++++|++||+++|+++||+...   |+                 
T Consensus       427 ------~p~r~~~~lp~~~G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~---g~-----------------  480 (631)
T 3q3e_A          427 ------APEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFAL---GQ-----------------  480 (631)
T ss_dssp             ------CCSSCCCCCCSCCSEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEE---SS-----------------
T ss_pred             ------CCccccccCCcCCCeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEec---CC-----------------
Confidence                  012445678865  89999999999999999999999999999999975320   00                 


Q ss_pred             chhhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcC
Q psy17691        535 TSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTG  614 (673)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~G  614 (673)
                                       .++. ...+.+++.++||+ +||+|.|+++..+|++.|+.+||+||||||+||||++||||||
T Consensus       481 -----------------~~g~-~~~~~~~~~~~GI~-~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~GgtTtlEALwmG  541 (631)
T 3q3e_A          481 -----------------SNGI-THPYVERFIKSYLG-DSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLG  541 (631)
T ss_dssp             -----------------CCGG-GHHHHHHHHHHHHG-GGEEEECCCCHHHHHHHHHTCSEEECCSSSCCSHHHHHHHHTT
T ss_pred             -----------------Cchh-hHHHHHHHHHcCCC-ccEEEcCCCCHHHHHHHHhcCcEEEeCCcccCChHHHHHHHcC
Confidence                             0122 34455667899997 8999999999999999999999999999999999999999999


Q ss_pred             CceeecCCCcchhhhHHHHHHhcCCCcc-ccCCHHHHHHHHHHhcCCHHHHHHHHhhhc
Q psy17691        615 TPVVTLPGETLASRVAASQLATLGCPEL-IARTHKEYQDIAIRLGTDRDYCEKALLYHE  672 (673)
Q Consensus       615 vPvvt~~g~~~~~r~~~~~l~~~gl~~~-ia~~~~~yv~~a~~la~d~~~~~~~~~~~~  672 (673)
                      |||||+.|+++++|+++|+|+++|++|| |+.|+++||++|++|++|+++|+++|.+..
T Consensus       542 VPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D~~~l~~LR~~Lr  600 (631)
T 3q3e_A          542 LVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRYII  600 (631)
T ss_dssp             CCEEEECCSSHHHHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCEEeccCCcHHHHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9999999999999999999999999995 999999999999999999999999998764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=100.00  E-value=9.9e-46  Score=420.36  Aligned_cols=416  Identities=29%  Similarity=0.423  Sum_probs=335.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEA  210 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  210 (673)
                      ++++|+.+|+++++++|++..++.++|.+|..+|++++|+++|+++++++|++..+++++|.++...|++++|++.|+++
T Consensus        38 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  117 (568)
T 2vsy_A           38 DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA  117 (568)
T ss_dssp             CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHH-----------HHHHH----c--CCC--
Q psy17691        211 IRIQPSFADAYSNMGNTLKEM---QDIQGALQCYSRAIQINPGFADAHSNLA-----------SIHKD----S--GKR--  268 (673)
Q Consensus       211 l~~~p~~~~~~~~lg~~~~~~---g~~~eA~~~~~~Al~l~p~~~~a~~~La-----------~~~~~----~--g~~--  268 (673)
                      ++.+|++..++.++|.++..+   |++++|++.|+++++.+|++...+..++           ..+..    .  ...  
T Consensus       118 l~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (568)
T 2vsy_A          118 HQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAP  197 (568)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTTSCCCHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhCCCCHHHHHHHHHHHHHhccCcccCCCCC
Confidence            999999999999999999999   9999999999999999998765554443           11111    0  000  


Q ss_pred             -----c-----cccCC---CCHHHHHHHHHHhh--cccc-----c-cccc--ch----------hhh--------hhhhh
Q psy17691        269 -----G-----FFIRT---DLNSAYFWLLLLDA--HSNL-----A-SIHK--DS----------VVM--------SLLQI  307 (673)
Q Consensus       269 -----~-----l~l~p---~~~~a~~~l~~~~~--~~~~-----~-~~~~--~~----------~~~--------~l~~~  307 (673)
                           .     +.+.+   ......+...+...  +.+.     . ....  .+          .+.        .+.+.
T Consensus       198 ~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  277 (568)
T 2vsy_A          198 TRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKH  277 (568)
T ss_dssp             CCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTSEEEECTTCCHHHHHHH
T ss_pred             CCCCCCCCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHHHHHHHhcCeEEECCCCCHHHHHHH
Confidence                 0     11111   12333433444433  3211     0 0000  00          111        11111


Q ss_pred             -----hhhhh--cc---------ccccchhhhhhhhcCCCCCCCcccccccccCccCchhhhHHHHhhhccCCCcccccc
Q psy17691        308 -----IHEFI--VG---------FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGD  371 (673)
Q Consensus       308 -----~DiLv--~G---------fa~rpApvQ~~~lGyp~ttG~~~~Dy~l~d~~~~p~~~~~~ysE~l~~lp~~~~~~~  371 (673)
                           +||++  .|         ++.+++|+|++|+||+.|+|+..+||+++|.+..+.+....|.|++..+|+.|....
T Consensus       278 i~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~i~~ipn~~~~~~  357 (568)
T 2vsy_A          278 IRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSD  357 (568)
T ss_dssp             HHHTTCSEEEECSSCTTCSSCHHHHTCCSSEEEEESSSSSCCCCTTCCEEEECTTTSCTTTGGGCSSEEEECSSCSCCCC
T ss_pred             HHhCCCCEEEECCCCCCcchHHHHhcCCCceeEeeecCCcccCCCCceEEEECCCcCCcccccCCcceeEcCCCcCCCCC
Confidence                 38876  22         677899999999999999999999999999998888877778888888887332100


Q ss_pred             ccccCchhhhhhhhccccccccccCCCcccccCCCCccchhhhhhhhccccccccccceeeecCceeccCcccccccccc
Q psy17691        372 HNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKT  451 (673)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (673)
                                                 ..         +                                         
T Consensus       358 ---------------------------~~---------~-----------------------------------------  360 (568)
T 2vsy_A          358 ---------------------------TS---------R-----------------------------------------  360 (568)
T ss_dssp             ---------------------------TT---------C-----------------------------------------
T ss_pred             ---------------------------CC---------C-----------------------------------------
Confidence                                       00         0                                         


Q ss_pred             ccCcccCcccccccccccCCCCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCC
Q psy17691        452 ATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRP  531 (673)
Q Consensus       452 ~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~  531 (673)
                             .......|+++|++.+.++|++.+...|..+.++++|.+|+++.|+.+|+++|                    
T Consensus       361 -------~~~~~~~r~~~~~~~~~~v~~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G--------------------  413 (568)
T 2vsy_A          361 -------VVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLS--------------------  413 (568)
T ss_dssp             -------CCCCCCCTGGGTCCTTSCEEEECCCGGGCCHHHHHHHHHHHHHCTTCEEEEEC--------------------
T ss_pred             -------CCCCCCCccccCCCCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCcEEEEec--------------------
Confidence                   00001357788999888888777766699999999999999999999999987                    


Q ss_pred             CccchhhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhh
Q psy17691        532 SASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL  611 (673)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal  611 (673)
                                          .++...+.+++.++++|++++||+|+|.++.+++...|+.+||+++|+++++|+|++|||
T Consensus       414 --------------------~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~~g~~~lEAm  473 (568)
T 2vsy_A          414 --------------------GPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDAL  473 (568)
T ss_dssp             --------------------CSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHH
T ss_pred             --------------------CCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCCCCcHHHHHHH
Confidence                                134557789999999999769999999999999999999999999999998899999999


Q ss_pred             hcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        612 WTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       612 ~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      +||+|||+++|..+.++++++++..+|++|+|.+|.++|++.+.+|.+|++.+.+++..
T Consensus       474 a~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~~~~~la~~i~~l~~~~~~~~~~~~~  532 (568)
T 2vsy_A          474 WTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHAR  532 (568)
T ss_dssp             HTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hCCCCEEeccCCCchHHHHHHHHHHCCChhhhcCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988754

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=4.5e-25  Score=236.87  Aligned_cols=271  Identities=30%  Similarity=0.445  Sum_probs=207.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..++++++.+|.++.+|..+|.++...|+               |+...++..+|.++...|++++|.. .++.
T Consensus        48 ~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~  126 (388)
T 1w3b_A           48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ-AYVS  126 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHH-HHHH
Confidence            47889999999999999999999999999999986               7777888889999999999998876 5666


Q ss_pred             HhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHH-HHHcCCHHHHHHHH
Q psy17691         66 TRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIIS-VLLLIQVSEAEECY  139 (673)
Q Consensus        66 ~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~-~~~~g~~~~A~~~~  139 (673)
                      +..+.|+..   ..++.++...++...              +...+  .+..+|++..++..++. +...|++++|+..|
T Consensus       127 al~~~p~~~~~~~~l~~~~~~~g~~~~--------------A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  192 (388)
T 1w3b_A          127 ALQYNPDLYCVRSDLGNLLKALGRLEE--------------AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF  192 (388)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHTTSCHHH--------------HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHccCHHH--------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            777777764   456777776665433              33332  34456777777755544 34477788888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        140 NTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD  219 (673)
Q Consensus       140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  219 (673)
                      +++++++|++..++..+|.++...|++++|+..|+++++.+|++..++.++|.++...|++++|++.|+++++.+|+++.
T Consensus       193 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  272 (388)
T 1w3b_A          193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD  272 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence            88888888777778888888888888888888888888888877777777888888888888888888888877777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHHHH
Q psy17691        220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLLLL  286 (673)
Q Consensus       220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~~  286 (673)
                      ++.++|.++.+.|++++|+.+|+++++++|++..++.+++.++...|+++         +++.|++..++++++..
T Consensus       273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  348 (388)
T 1w3b_A          273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV  348 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            77778888877788888888888887777777777777777777777776         56677777777777644

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=1.5e-24  Score=232.88  Aligned_cols=272  Identities=25%  Similarity=0.310  Sum_probs=247.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..|+++++.+|++..++..+|.++...|+               |..+.+++.+|.++...|++++|.. .++.
T Consensus        14 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~   92 (388)
T 1w3b_A           14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE-HYRH   92 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH-HHHH
Confidence            58999999999999999999999999999999986               7888999999999999999999986 6777


Q ss_pred             HhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHH-HcCCHHHHHHHH
Q psy17691         66 TRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVL-LLIQVSEAEECY  139 (673)
Q Consensus        66 ~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~  139 (673)
                      +..+.|++.   ..++.++...++...+              +..+  .+..+|+....+..++.++ ..|++++|+.+|
T Consensus        93 al~~~p~~~~~~~~l~~~~~~~g~~~~A--------------~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (388)
T 1w3b_A           93 ALRLKPDFIDGYINLAAALVAAGDMEGA--------------VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY  158 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHSCSSHH--------------HHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHcCcchHHHHHHHHHHHHHcCCHHHH--------------HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence            888888874   5678888887775443              3332  4567899888886665554 589999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        140 NTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD  219 (673)
Q Consensus       140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  219 (673)
                      +++++.+|++..++.++|.++...|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|++..
T Consensus       159 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  238 (388)
T 1w3b_A          159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV  238 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHHHHh
Q psy17691        220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLLLLD  287 (673)
Q Consensus       220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~~~  287 (673)
                      ++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|+++         +++.|+++.++.+++...
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  315 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998         678999999999888554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=2.7e-22  Score=210.61  Aligned_cols=271  Identities=14%  Similarity=0.136  Sum_probs=233.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..|+++++.+|+++.++..+|.++...|+               |+...+++.+|.++...|++++|.. .++.
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~   96 (359)
T 3ieg_A           18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAED-DFKK   96 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHH-HHHH
Confidence            58999999999999999999999999999999997               7788999999999999999999986 6777


Q ss_pred             HhhcCC---Cchh---hh------------hhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHH-H
Q psy17691         66 TRELAP---GNRI---RI------------GYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYI-I  124 (673)
Q Consensus        66 ~~~l~p---~~~~---~l------------~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~-~  124 (673)
                      +..+.|   .+..   .+            +.++...++              ...++..+  .....|++...+... .
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~  162 (359)
T 3ieg_A           97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD--------------YTAAITFLDKILEVCVWDAELRELRAE  162 (359)
T ss_dssp             HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            777777   4431   12            333444333              34444444  456688888887555 4


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH------------HHHH
Q psy17691        125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS------------NLAS  192 (673)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~------------~la~  192 (673)
                      .+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++.            .+|.
T Consensus       163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~  242 (359)
T 3ieg_A          163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE  242 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence            5567999999999999999999999999999999999999999999999999999999988665            4488


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        193 VLQQQGKLTDALLHYKEAIRIQPSFAD----AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       193 ~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      ++...|++++|+..|+++++..|++..    ++..+|.++..+|++++|+.+|+++++.+|++..++.++|.++...|++
T Consensus       243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  322 (359)
T 3ieg_A          243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMY  322 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH
Confidence            899999999999999999999999874    4678999999999999999999999999999999999999999999999


Q ss_pred             c---------cccCCCCHHHHHHHHHH
Q psy17691        269 G---------FFIRTDLNSAYFWLLLL  286 (673)
Q Consensus       269 ~---------l~l~p~~~~a~~~l~~~  286 (673)
                      +         ++++|+++.++..++.+
T Consensus       323 ~~A~~~~~~a~~~~p~~~~~~~~l~~~  349 (359)
T 3ieg_A          323 DEAIQDYEAAQEHNENDQQIREGLEKA  349 (359)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            7         78999999988777644

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=4.1e-22  Score=217.41  Aligned_cols=272  Identities=14%  Similarity=0.132  Sum_probs=235.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..|+++++.+|+++.++..+|.++...|+               |+...+++.+|.++...|++++|.. .++.
T Consensus        41 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~  119 (450)
T 2y4t_A           41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAED-DFKK  119 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHH
Confidence            47899999999999999999999999999999997               7788899999999999999999986 6677


Q ss_pred             HhhcCCCch---hhh---------------hhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHH-H
Q psy17691         66 TRELAPGNR---IRI---------------GYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYI-I  124 (673)
Q Consensus        66 ~~~l~p~~~---~~l---------------~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~-~  124 (673)
                      +..+.|.+.   ...               +..+...++              ...++..+  .....|++...+..+ .
T Consensus       120 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~  185 (450)
T 2y4t_A          120 VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD--------------YTAAIAFLDKILEVCVWDAELRELRAE  185 (450)
T ss_dssp             HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            777777654   211               222333332              33444444  445678888877555 5


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH------------HH
Q psy17691        125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL------------AS  192 (673)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l------------a~  192 (673)
                      .+...|++++|+.+|+++++.+|+++.++..+|.+|...|++++|+..|+++++.+|++...+..+            |.
T Consensus       186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  265 (450)
T 2y4t_A          186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE  265 (450)
T ss_dssp             HHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            566799999999999999999999999999999999999999999999999999999999888776            99


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        193 VLQQQGKLTDALLHYKEAIRIQPSFA----DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       193 ~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      ++...|++++|+..|+++++..|+++    .++.++|.++.+.|++++|+.+|+++++++|++..++.++|.++...|++
T Consensus       266 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  345 (450)
T 2y4t_A          266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY  345 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH
Confidence            99999999999999999999999985    47899999999999999999999999999999999999999999999999


Q ss_pred             c---------cccCCCCHHHHHHHHHHh
Q psy17691        269 G---------FFIRTDLNSAYFWLLLLD  287 (673)
Q Consensus       269 ~---------l~l~p~~~~a~~~l~~~~  287 (673)
                      +         ++++|+++.++..++.+.
T Consensus       346 ~~A~~~~~~al~~~p~~~~~~~~l~~~~  373 (450)
T 2y4t_A          346 DEAIQDYETAQEHNENDQQIREGLEKAQ  373 (450)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            8         789999999988887543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.91  E-value=3e-22  Score=208.14  Aligned_cols=241  Identities=17%  Similarity=0.131  Sum_probs=203.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcC-ChhhhcCChhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG-QINVLHKPPYK   64 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g-~~~~A~~~~~~   64 (673)
                      ++++|+..|+++++.+|.+..++..++.++...|+               |+...+++.+|.++...| ++++|.     
T Consensus        37 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~-----  111 (330)
T 3hym_B           37 DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHAR-----  111 (330)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHH-----
T ss_pred             CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHH-----
Confidence            47899999999999999999999999999988886               334444444444444444 443332     


Q ss_pred             HHhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHH
Q psy17691         65 YTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNT  141 (673)
Q Consensus        65 ~~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~  141 (673)
                                                               ..+  .+..+|++...+..+ ..+...|++++|+.+|++
T Consensus       112 -----------------------------------------~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  150 (330)
T 3hym_B          112 -----------------------------------------RYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFT  150 (330)
T ss_dssp             -----------------------------------------HHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             -----------------------------------------HHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence                                                     222  344567777777554 455679999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Q psy17691        142 ALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ-------  214 (673)
Q Consensus       142 al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------  214 (673)
                      +++..|++..++..+|.++...|++++|+..++++++.+|++..++.++|.++...|++++|+..++++++..       
T Consensus       151 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  230 (330)
T 3hym_B          151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV  230 (330)
T ss_dssp             HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC
T ss_pred             HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986       


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHH
Q psy17691        215 --PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWL  283 (673)
Q Consensus       215 --p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l  283 (673)
                        |....++.++|.++..+|++++|+.+|+++++++|++..++.++|.++...|+++         ++++|+++.++..+
T Consensus       231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  310 (330)
T 3hym_B          231 TVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML  310 (330)
T ss_dssp             TTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHH
Confidence              6677899999999999999999999999999999999999999999999999987         78899999999888


Q ss_pred             HHHh
Q psy17691        284 LLLD  287 (673)
Q Consensus       284 ~~~~  287 (673)
                      +.+.
T Consensus       311 ~~~~  314 (330)
T 3hym_B          311 GHCI  314 (330)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.90  E-value=2e-22  Score=199.26  Aligned_cols=158  Identities=23%  Similarity=0.232  Sum_probs=144.8

Q ss_pred             hcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHh
Q psy17691        111 ALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQ-----------GYIEEATRLYLKALE  178 (673)
Q Consensus       111 ~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~-----------g~~~eA~~~~~~al~  178 (673)
                      ..+|++..++..+ ..+...|++++|+..|+++++++|+++.++.++|.++..+           |++++|+..|+++++
T Consensus        33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  112 (217)
T 2pl2_A           33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER  112 (217)
T ss_dssp             TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence            3567777777555 4555689999999999999999999999999999999999           999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691        179 VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL  258 (673)
Q Consensus       179 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~L  258 (673)
                      ++|++..++.++|.++..+|++++|++.|+++++++ +++.++.++|.+|..+|++++|+..|+++++++|++..++.++
T Consensus       113 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l  191 (217)
T 2pl2_A          113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY  191 (217)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            999999999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCc
Q psy17691        259 ASIHKDSGKRG  269 (673)
Q Consensus       259 a~~~~~~g~~~  269 (673)
                      |.++...|+++
T Consensus       192 a~~~~~~g~~~  202 (217)
T 2pl2_A          192 ASALLLKGKAE  202 (217)
T ss_dssp             HHHHTC-----
T ss_pred             HHHHHHccCHH
Confidence            99999999876

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.90  E-value=8.2e-22  Score=208.85  Aligned_cols=241  Identities=18%  Similarity=0.199  Sum_probs=189.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..|+++++.+|++..++..+|.++...|+               |+...++..+|.++...|++++|.. .++.
T Consensus        79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~  157 (368)
T 1fch_A           79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE-ILRD  157 (368)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHH
Confidence            35677777777777777777777777777777775               5556666666666666666666654 3444


Q ss_pred             HhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691         66 TRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRL  145 (673)
Q Consensus        66 ~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  145 (673)
                      +..+.|.............                           ........+..++.++..|++++|+.+|+++++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  210 (368)
T 1fch_A          158 WLRYTPAYAHLVTPAEEGA---------------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  210 (368)
T ss_dssp             HHHTSTTTGGGCC------------------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcCcHHHHHHHHHHh---------------------------hhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence            4444443321110000000                           0000011111344555889999999999999999


Q ss_pred             CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        146 CPT--HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN  223 (673)
Q Consensus       146 ~p~--~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  223 (673)
                      +|+  ++.++..+|.++...|++++|+.+|+++++.+|++..++.++|.++...|++++|+..|+++++++|++..++.+
T Consensus       211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  290 (368)
T 1fch_A          211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN  290 (368)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            999  899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHcCCCc
Q psy17691        224 MGNTLKEMQDIQGALQCYSRAIQINPGF-----------ADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       224 lg~~~~~~g~~~eA~~~~~~Al~l~p~~-----------~~a~~~La~~~~~~g~~~  269 (673)
                      +|.+|..+|++++|+.+|++++++.|++           ..+|.+++.++..+|+++
T Consensus       291 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  347 (368)
T 1fch_A          291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  347 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence            9999999999999999999999999988           899999999999999987

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.89  E-value=5.1e-22  Score=210.95  Aligned_cols=235  Identities=17%  Similarity=0.137  Sum_probs=194.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..|+++++.+|+++.++..+|.++..+|+               |+...++..+|.++...|++++|.. .++.
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~  158 (365)
T 4eqf_A           80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE-ALKN  158 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHH-HHHH
Confidence            57899999999999999999999999999999997               6677778888888888888887764 3444


Q ss_pred             HhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691         66 TRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALR  144 (673)
Q Consensus        66 ~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~  144 (673)
                      +..+.|.......    .++                             .....+ ..+..+...|++++|+.+|+++++
T Consensus       159 al~~~p~~~~~~~----~~~-----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  205 (365)
T 4eqf_A          159 WIKQNPKYKYLVK----NKK-----------------------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAH  205 (365)
T ss_dssp             HHHHCHHHHCC----------------------------------------------------CCHHHHHHHHHHHHHHH
T ss_pred             HHHhCccchHHHh----hhc-----------------------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            4443332210000    000                             000111 123445568899999999999999


Q ss_pred             hCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        145 LCPT--HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS  222 (673)
Q Consensus       145 ~~p~--~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  222 (673)
                      .+|+  ++.++..+|.++..+|++++|+.+|+++++.+|++..++.++|.++...|++++|+..|+++++++|++..++.
T Consensus       206 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  285 (365)
T 4eqf_A          206 QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY  285 (365)
T ss_dssp             HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH
Confidence            9999  89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCCc
Q psy17691        223 NMGNTLKEMQDIQGALQCYSRAIQINPG------------FADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       223 ~lg~~~~~~g~~~eA~~~~~~Al~l~p~------------~~~a~~~La~~~~~~g~~~  269 (673)
                      ++|.+|..+|++++|+.+|+++++++|+            +..+|.+|+.++...|+.+
T Consensus       286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  344 (365)
T 4eqf_A          286 NLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE  344 (365)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence            9999999999999999999999999887            3678999999999999876

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.88  E-value=6.3e-21  Score=197.84  Aligned_cols=239  Identities=16%  Similarity=0.119  Sum_probs=199.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..|+++++.+|++..++..+|.++...|+               |+...++..+|.++...|++++|.. .++.
T Consensus        36 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~  114 (327)
T 3cv0_A           36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA-SLRA  114 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHH-HHHH
Confidence            47899999999999999999999999999999997               6677778888888888888888765 4444


Q ss_pred             HhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHH--HHHcCCHHHHHHHHHHHH
Q psy17691         66 TRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIIS--VLLLIQVSEAEECYNTAL  143 (673)
Q Consensus        66 ~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~--~~~~g~~~~A~~~~~~al  143 (673)
                      +....|..........                             ...++.......++.  +...|++++|+.++++++
T Consensus       115 ~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  165 (327)
T 3cv0_A          115 WLLSQPQYEQLGSVNL-----------------------------QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL  165 (327)
T ss_dssp             HHHTSTTTTTC-------------------------------------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHhCCccHHHHHHHh-----------------------------HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence            4444443321110000                             000111111111133  556789999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        144 RLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN  223 (673)
Q Consensus       144 ~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  223 (673)
                      +.+|++..++..+|.++...|++++|+.+++++++.+|++..++.++|.++...|++++|+..|+++++.+|++..++.+
T Consensus       166 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  245 (327)
T 3cv0_A          166 EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN  245 (327)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCCc
Q psy17691        224 MGNTLKEMQDIQGALQCYSRAIQINPG------------FADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       224 lg~~~~~~g~~~eA~~~~~~Al~l~p~------------~~~a~~~La~~~~~~g~~~  269 (673)
                      +|.++..+|++++|+.+|++++++.|+            +..++.+++.++...|+++
T Consensus       246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  303 (327)
T 3cv0_A          246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD  303 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence            999999999999999999999999999            7999999999999999976

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=5.5e-21  Score=198.60  Aligned_cols=225  Identities=16%  Similarity=0.193  Sum_probs=194.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-C---------------CCcHHHHHHHHHHHHHcCChhhhcCChhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKG-Q---------------PNFPDAYCNLANALKEKGQINVLHKPPYK   64 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g-~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~   64 (673)
                      ++++|+..++++++.+|+++.++..+|.++...| +               |+...+++.+|.++...|++++|.. .++
T Consensus        71 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~  149 (330)
T 3hym_B           71 KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA-AYF  149 (330)
T ss_dssp             CHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHH-HHH
T ss_pred             hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHH-HHH
Confidence            4789999999999999999999999999999999 6               4555666666666666666666543 111


Q ss_pred             HHhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHH-HHHHHHHcCCHHHHHHHHHHHH
Q psy17691         65 YTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFS-YIISVLLLIQVSEAEECYNTAL  143 (673)
Q Consensus        65 ~~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al  143 (673)
                      .                                           .....|+....+. .+..+...|++++|+.+|++++
T Consensus       150 ~-------------------------------------------a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  186 (330)
T 3hym_B          150 T-------------------------------------------AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQAL  186 (330)
T ss_dssp             H-------------------------------------------HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             H-------------------------------------------HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            1                                           2334566555554 4455667999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691        144 RLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF---------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ  214 (673)
Q Consensus       144 ~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  214 (673)
                      +.+|++..++..+|.++...|++++|+.+++++++..         |....++.++|.++...|++++|+.+|+++++.+
T Consensus       187 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  266 (330)
T 3hym_B          187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI  266 (330)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999986         6778899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCCc
Q psy17691        215 PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH-KDSGKRG  269 (673)
Q Consensus       215 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~-~~~g~~~  269 (673)
                      |++..++.++|.++..+|++++|+.+|+++++++|++..++..++.++ ...|+.+
T Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence            999999999999999999999999999999999999999999999988 5566543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.88  E-value=8.7e-22  Score=211.71  Aligned_cols=154  Identities=14%  Similarity=0.030  Sum_probs=90.8

Q ss_pred             cCCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17691        112 LSPDDGTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL  190 (673)
Q Consensus       112 l~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  190 (673)
                      ++|++..+|...+. +..+|++++|+.+|+++++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+++
T Consensus       161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l  240 (382)
T 2h6f_A          161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR  240 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            44555555543333 33456666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        191 ASVLQQ-QGKLTDA-----LLHYKEAIRIQPSFADAYSNMGNTLKEMQ--DIQGALQCYSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       191 a~~~~~-~g~~~eA-----~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~Al~l~p~~~~a~~~La~~~  262 (673)
                      |.++.. .|.+++|     +++|+++++++|++..+|+++|.++...|  ++++|++.++++ +.+|++..++..||.+|
T Consensus       241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~  319 (382)
T 2h6f_A          241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIY  319 (382)
T ss_dssp             HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHH
Confidence            666666 3333555     35566666666666666666666666655  456666666555 55666666666666666


Q ss_pred             HHcC
Q psy17691        263 KDSG  266 (673)
Q Consensus       263 ~~~g  266 (673)
                      .++|
T Consensus       320 ~~~~  323 (382)
T 2h6f_A          320 EDML  323 (382)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=4.7e-20  Score=193.41  Aligned_cols=251  Identities=16%  Similarity=0.134  Sum_probs=215.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------C---CcHHHHHHH------------HHHHH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------P---NFPDAYCNL------------ANALK   50 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~---~~a~a~~~l------------a~~l~   50 (673)
                      ++++|+..|+++++.+|++..++..+|.++...|+               |   +....+..+            |..+.
T Consensus        52 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (359)
T 3ieg_A           52 KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF  131 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999997               5   555566555            78899


Q ss_pred             HcCChhhhcCChhhHHhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHH-H
Q psy17691         51 EKGQINVLHKPPYKYTRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYI-I  124 (673)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~-~  124 (673)
                      ..|++++|.. .++.+....|.+.   ..++.++...++.              ..++..+  .+...|++...+..+ .
T Consensus       132 ~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~A~~~~~~~~~~~~~~~~~~~~la~  196 (359)
T 3ieg_A          132 DGADYTAAIT-FLDKILEVCVWDAELRELRAECFIKEGEP--------------RKAISDLKAASKLKSDNTEAFYKIST  196 (359)
T ss_dssp             HTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------HHHHHHHHHHHTTCSCCHHHHHHHHH
T ss_pred             HccCHHHHHH-HHHHHHHhCCCchHHHHHHHHHHHHCCCH--------------HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999986 6667777777664   4567777766653              3344443  455678888887555 4


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHH
Q psy17691        125 SVLLLIQVSEAEECYNTALRLCPTHADSLN------------NLANIKREQGYIEEATRLYLKALEVFPEFAA----AHS  188 (673)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~  188 (673)
                      .+...|++++|+..|+++++.+|++..++.            .+|.++...|++++|+..++++++..|++..    ++.
T Consensus       197 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  276 (359)
T 3ieg_A          197 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKE  276 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            556799999999999999999999988765            4488899999999999999999999999874    467


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG  266 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g  266 (673)
                      .+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+.+|+++++++|++..++..++.++...+
T Consensus       277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999876654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.87  E-value=1.8e-20  Score=212.28  Aligned_cols=269  Identities=17%  Similarity=0.161  Sum_probs=223.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHH
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKYT   66 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~   66 (673)
                      +++|+..|+++++. |.+..++..+|.+|...|+               |+....+..++.++...|++++|.. .++..
T Consensus       288 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~  365 (597)
T 2xpi_A          288 LRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL-ISNDL  365 (597)
T ss_dssp             HHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHH-HHHHH
Confidence            67888888888877 7788888888888888887               3444556667777888888888775 44455


Q ss_pred             hhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHH
Q psy17691         67 RELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYI-ISVLLLIQVSEAEECYN  140 (673)
Q Consensus        67 ~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~  140 (673)
                      ....|.+.   ..++..+...++.              .++...+  .....|++...|..+ ..+...|++++|+..|+
T Consensus       366 ~~~~~~~~~~~~~l~~~~~~~g~~--------------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  431 (597)
T 2xpi_A          366 VDRHPEKAVTWLAVGIYYLCVNKI--------------SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT  431 (597)
T ss_dssp             HHHCTTSHHHHHHHHHHHHHTTCH--------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhhCcccHHHHHHHHHHHHHhccH--------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55556553   3455666665543              3334433  345678888787555 45567999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------C
Q psy17691        141 TALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI------Q  214 (673)
Q Consensus       141 ~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~  214 (673)
                      ++++..|++..++..+|.+|...|++++|++.|+++++.+|.++.++..+|.++...|++++|++.|+++++.      +
T Consensus       432 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  511 (597)
T 2xpi_A          432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN  511 (597)
T ss_dssp             HHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998      6


Q ss_pred             CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHH
Q psy17691        215 PSF-ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLL  284 (673)
Q Consensus       215 p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~  284 (673)
                      |++ ..+|..+|.+|.+.|++++|++.|+++++++|++..++..++.+|...|+++         ++++|+++.++..++
T Consensus       512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~  591 (597)
T 2xpi_A          512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK  591 (597)
T ss_dssp             SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            664 7899999999999999999999999999999999999999999999999987         788999999998887


Q ss_pred             HH
Q psy17691        285 LL  286 (673)
Q Consensus       285 ~~  286 (673)
                      .+
T Consensus       592 ~~  593 (597)
T 2xpi_A          592 RA  593 (597)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.87  E-value=4.9e-21  Score=189.23  Aligned_cols=173  Identities=16%  Similarity=0.125  Sum_probs=162.1

Q ss_pred             CCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy17691        114 PDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS  192 (673)
Q Consensus       114 p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  192 (673)
                      |++...+ ..+..+...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++..+++++|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            4455555 445566789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        193 VLQQQ-----------GKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       193 ~~~~~-----------g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      ++..+           |++++|+..|+++++++|+++.++.++|.++..+|++++|+.+|+++++++ +++.++.++|.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence            99999           999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHcCCCc---------cccCCCCHHHHHHHHHHh
Q psy17691        262 HKDSGKRG---------FFIRTDLNSAYFWLLLLD  287 (673)
Q Consensus       262 ~~~~g~~~---------l~l~p~~~~a~~~l~~~~  287 (673)
                      +...|+++         ++++|+++.++.+++.+.
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~  195 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL  195 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            99999998         788999999999988654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.87  E-value=1.3e-21  Score=210.25  Aligned_cols=177  Identities=11%  Similarity=0.030  Sum_probs=157.9

Q ss_pred             HhcCCCChhHHHHHH-HHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy17691        110 YALSPDDGTTFSYII-SVLLLIQ-VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH  187 (673)
Q Consensus       110 ~~l~p~~~~~~~~~~-~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  187 (673)
                      +.++|++..+|...+ .+..+|+ +++|+.+|+++++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|
T Consensus       124 l~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~  203 (382)
T 2h6f_A          124 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW  203 (382)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             HHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHH
Confidence            346788888886555 4556886 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE-MQDIQGA-----LQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       188 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~eA-----~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      +++|.++..+|++++|+.+|+++++++|++..+|+++|.++.. .|..++|     +.+|+++++++|++..+|.+++.+
T Consensus       204 ~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~l  283 (382)
T 2h6f_A          204 QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI  283 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999 5555788     599999999999999999999999


Q ss_pred             HHHcCC--Cc--------cccCCCCHHHHHHHHHH
Q psy17691        262 HKDSGK--RG--------FFIRTDLNSAYFWLLLL  286 (673)
Q Consensus       262 ~~~~g~--~~--------l~l~p~~~~a~~~l~~~  286 (673)
                      +...|.  ++        ++.+|+++.++..++.+
T Consensus       284 l~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~  318 (382)
T 2h6f_A          284 LQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDI  318 (382)
T ss_dssp             HTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred             HHccCccchHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            998883  44        46788888888777643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.86  E-value=1.1e-19  Score=198.11  Aligned_cols=251  Identities=16%  Similarity=0.132  Sum_probs=215.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcH---HHHHH------------HHHHHH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFP---DAYCN------------LANALK   50 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a---~a~~~------------la~~l~   50 (673)
                      ++++|+..|+++++.+|++..++..+|.+|..+|+               |+..   ..+..            +|..+.
T Consensus        75 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  154 (450)
T 2y4t_A           75 KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF  154 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999997               4444   44433            366689


Q ss_pred             HcCChhhhcCChhhHHhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHH-H
Q psy17691         51 EKGQINVLHKPPYKYTRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYI-I  124 (673)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~-~  124 (673)
                      ..|++++|.. .++.+....|.+.   ..++.++...++...              ++..+  .....|++...+..+ .
T Consensus       155 ~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--------------A~~~~~~~~~~~~~~~~~~~~l~~  219 (450)
T 2y4t_A          155 GSGDYTAAIA-FLDKILEVCVWDAELRELRAECFIKEGEPRK--------------AISDLKAASKLKNDNTEAFYKIST  219 (450)
T ss_dssp             HHTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCGGG--------------GHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             HcCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHCCCHHH--------------HHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999986 6677777777664   456777777776443              33333  345578888887555 4


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHH
Q psy17691        125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNL------------ANIKREQGYIEEATRLYLKALEVFPEFA----AAHS  188 (673)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~L------------g~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~  188 (673)
                      .+...|++++|+..|+++++.+|++...+..+            |.++...|++++|+.+|+++++..|+++    ..+.
T Consensus       220 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~  299 (450)
T 2y4t_A          220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE  299 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            55679999999999999999999999988776            9999999999999999999999999985    4789


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG  266 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g  266 (673)
                      ++|.++...|++++|+..++++++.+|+++.+|..+|.++..+|++++|+.+|+++++++|++..++..++.+....+
T Consensus       300 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  377 (450)
T 2y4t_A          300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK  377 (450)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998766554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.86  E-value=5.2e-21  Score=202.62  Aligned_cols=178  Identities=21%  Similarity=0.316  Sum_probs=157.1

Q ss_pred             HHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHHcCCHHHHHH
Q psy17691        109 CYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLN----------------NLANIKREQGYIEEATR  171 (673)
Q Consensus       109 ~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----------------~Lg~~~~~~g~~~eA~~  171 (673)
                      .+...|++..++..+ ..+...|++++|+..|+++++.+|++...+.                .++.++ ..|++++|+.
T Consensus       124 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~  202 (368)
T 1fch_A          124 CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKE  202 (368)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHH
Confidence            344567777777555 4556699999999999999999999877665                567666 8999999999


Q ss_pred             HHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        172 LYLKALEVFPE--FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       172 ~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p  249 (673)
                      .|+++++.+|.  +..++.++|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+.+|+++++++|
T Consensus       203 ~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  282 (368)
T 1fch_A          203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP  282 (368)
T ss_dssp             HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999  8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCc---------cccCCCC-----------HHHHHHHHHHh
Q psy17691        250 GFADAHSNLASIHKDSGKRG---------FFIRTDL-----------NSAYFWLLLLD  287 (673)
Q Consensus       250 ~~~~a~~~La~~~~~~g~~~---------l~l~p~~-----------~~a~~~l~~~~  287 (673)
                      ++..++.++|.++...|+++         +.+.|++           ..++..++.+.
T Consensus       283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~  340 (368)
T 1fch_A          283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL  340 (368)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH
Confidence            99999999999999999987         5566666           77777777543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.1e-21  Score=211.89  Aligned_cols=266  Identities=18%  Similarity=0.127  Sum_probs=177.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..|+++++.+| ++.++..+|.++...|+               |+...+++.+|.++...|++++|.. .++.
T Consensus        21 ~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~   98 (514)
T 2gw1_A           21 KYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMF-DLSV   98 (514)
T ss_dssp             CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred             cHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHH-HHHH
Confidence            58999999999999999 69999999999999997               8888999999999999999999986 5556


Q ss_pred             HhhcCCCchhhhhhhh-------------hhc--------------------------------------CCCcccc---
Q psy17691         66 TRELAPGNRIRIGYVS-------------SDF--------------------------------------GNHPTSH---   91 (673)
Q Consensus        66 ~~~l~p~~~~~l~~~~-------------~~l--------------------------------------~~~~~a~---   91 (673)
                      +....|..........             ..+                                      +......   
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (514)
T 2gw1_A           99 LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA  178 (514)
T ss_dssp             HHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred             HHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence            6666653321110000             000                                      0000000   


Q ss_pred             -----------c------ccccCCCCchhHHHHHHH--h-----c--CCC-------ChhHHHH-HHHHHHcCCHHHHHH
Q psy17691         92 -----------L------MQSVPGMHNKSRVEIFCY--A-----L--SPD-------DGTTFSY-IISVLLLIQVSEAEE  137 (673)
Q Consensus        92 -----------~------~~~~~~~~~~~a~~~~~~--~-----l--~p~-------~~~~~~~-~~~~~~~g~~~~A~~  137 (673)
                                 .      ...........++..+..  .     +  .|+       ....+.. +..+...|++++|+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  258 (514)
T 2gw1_A          179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE  258 (514)
T ss_dssp             SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence                       0      000001222333333321  1     2  222       2333332 334445677777777


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        138 CYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF  217 (673)
Q Consensus       138 ~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~  217 (673)
                      +|+++++.+|+ ..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++.+|++
T Consensus       259 ~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  337 (514)
T 2gw1_A          259 DIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN  337 (514)
T ss_dssp             HHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh
Confidence            77777777777 77777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       218 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ..++..+|.++...|++++|+.+|+++++..|++..++.++|.++...|+++
T Consensus       338 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  389 (514)
T 2gw1_A          338 IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD  389 (514)
T ss_dssp             SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHH
Confidence            7777777777777777777777777777777777777777777777777765

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.86  E-value=6.1e-20  Score=207.95  Aligned_cols=272  Identities=16%  Similarity=0.111  Sum_probs=229.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------------------------------HcCC-------
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALK--------------------------------------EKGQ-------   35 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~--------------------------------------~~g~-------   35 (673)
                      ++++|+..|+++++.+|++..++..++.++.                                      ..|+       
T Consensus       215 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~  294 (597)
T 2xpi_A          215 NFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY  294 (597)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence            4789999999999999999999888865431                                      1111       


Q ss_pred             -------CCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHH
Q psy17691         36 -------PNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRV  105 (673)
Q Consensus        36 -------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~  105 (673)
                             +.+...+..++..+...|++++|.. .++......|.+.   ..++.++...++..              ++.
T Consensus       295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------------~A~  359 (597)
T 2xpi_A          295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLA-ITTKILEIDPYNLDVYPLHLASLHESGEKN--------------KLY  359 (597)
T ss_dssp             HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCCTTHHHHHHHHHHHTCHH--------------HHH
T ss_pred             HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHcCcccHHHHHHHHHHHHHhCCHH--------------HHH
Confidence                   4678889999999999999999986 5666666666543   34455555555432              233


Q ss_pred             HHH--HHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17691        106 EIF--CYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE  182 (673)
Q Consensus       106 ~~~--~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~  182 (673)
                      ..+  .....|++...+..+ ..+...|++++|+.+|+++++.+|++..+|..+|.+|.+.|++++|++.|+++++..|+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  439 (597)
T 2xpi_A          360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG  439 (597)
T ss_dssp             HHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            332  335678888887655 45667999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHH
Q psy17691        183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI------NPGF-ADAH  255 (673)
Q Consensus       183 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l------~p~~-~~a~  255 (673)
                      +..++..+|.+|...|++++|++.|+++++..|+++.+|..+|.+|.+.|++++|+++|+++++.      +|++ ..++
T Consensus       440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~  519 (597)
T 2xpi_A          440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW  519 (597)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998      6665 7899


Q ss_pred             HHHHHHHHHcCCCc---------cccCCCCHHHHHHHHHHh
Q psy17691        256 SNLASIHKDSGKRG---------FFIRTDLNSAYFWLLLLD  287 (673)
Q Consensus       256 ~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~~~  287 (673)
                      .+++.++...|+++         ++++|+++.++..++...
T Consensus       520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  560 (597)
T 2xpi_A          520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY  560 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            99999999999998         678899999998888543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.86  E-value=4.4e-20  Score=176.29  Aligned_cols=141  Identities=19%  Similarity=0.221  Sum_probs=122.8

Q ss_pred             cCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17691        112 LSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL  190 (673)
Q Consensus       112 l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  190 (673)
                      ++|++..++..+ ..+...|++++|+..+++++...|++..++..+|.++...+++++|...++++++.+|++..++..+
T Consensus        34 ~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~l  113 (184)
T 3vtx_A           34 ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKL  113 (184)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            456666666444 4455688999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~  252 (673)
                      |.++..+|++++|++.|+++++++|+++.++.++|.+|.++|++++|+.+|++|++++|+++
T Consensus       114 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          114 GLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            99999999999999999999999999999999999999999999999999999999988753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.85  E-value=2.2e-20  Score=208.30  Aligned_cols=266  Identities=18%  Similarity=0.210  Sum_probs=197.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..|+++++.+|+++.++..+|.+|..+|+               |+...+++.+|.++...|++++|.... + 
T Consensus        40 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~-~-  117 (537)
T 3fp2_A           40 NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-S-  117 (537)
T ss_dssp             CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH-H-
T ss_pred             cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHH-H-
Confidence            46899999999999999999999999999999997               888999999999999999999998633 3 


Q ss_pred             HhhcCCCchhhh--------------hhhhhhcCCC------------------------------------ccc--ccc
Q psy17691         66 TRELAPGNRIRI--------------GYVSSDFGNH------------------------------------PTS--HLM   93 (673)
Q Consensus        66 ~~~l~p~~~~~l--------------~~~~~~l~~~------------------------------------~~a--~~~   93 (673)
                      ...+.|+.....              ......++..                                    ...  ...
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (537)
T 3fp2_A          118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS  197 (537)
T ss_dssp             HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence            444444322100              0000000000                                    000  000


Q ss_pred             cccC-------------CCCchhHHHHH--HHhcCCCChhH-------HHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691         94 QSVP-------------GMHNKSRVEIF--CYALSPDDGTT-------FSY-IISVLLLIQVSEAEECYNTALRLCPTHA  150 (673)
Q Consensus        94 ~~~~-------------~~~~~~a~~~~--~~~l~p~~~~~-------~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~  150 (673)
                      ....             ......++..+  .+...|++...       +.. +..+...|++++|+..|+++++.+|+ .
T Consensus       198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~  276 (537)
T 3fp2_A          198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P  276 (537)
T ss_dssp             HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-c
Confidence            0000             00122333333  33456766543       322 23445688999999999999999988 8


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE  230 (673)
Q Consensus       151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  230 (673)
                      .++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++.++|.++..
T Consensus       277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  356 (537)
T 3fp2_A          277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK  356 (537)
T ss_dssp             HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        231 MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       231 ~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +|++++|+.+|+++++.+|++..++.++|.++...|+++
T Consensus       357 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  395 (537)
T 3fp2_A          357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFD  395 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence            999999999999999999999999999999999888876

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.85  E-value=7.8e-20  Score=203.86  Aligned_cols=270  Identities=16%  Similarity=0.127  Sum_probs=175.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH----------------------------------
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLA----------------------------------   46 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la----------------------------------   46 (673)
                      ++++|+..|+++++++|++..++..+|.++..+|+++.+...+...                                  
T Consensus        74 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~  153 (537)
T 3fp2_A           74 DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD  153 (537)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC--
T ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999999999999866555443200                                  


Q ss_pred             --------------------------------------------------------HHHHHcCChhhhcCChhhHHhhcC
Q psy17691         47 --------------------------------------------------------NALKEKGQINVLHKPPYKYTRELA   70 (673)
Q Consensus        47 --------------------------------------------------------~~l~~~g~~~~A~~~~~~~~~~l~   70 (673)
                                                                              ......+++++|.. .++.+....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~-~~~~~l~~~  232 (537)
T 3fp2_A          154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD-MYHSLLSAN  232 (537)
T ss_dssp             -----CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH-HHHHHHC--
T ss_pred             ccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHC
Confidence                                                                    00001123333332 344455555


Q ss_pred             CCch----------hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHH-HHHHcCCHHHHHH
Q psy17691         71 PGNR----------IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYII-SVLLLIQVSEAEE  137 (673)
Q Consensus        71 p~~~----------~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~-~~~~~g~~~~A~~  137 (673)
                      |++.          ..++.++...++.              ..++..+  ....+|+ ...+..++ .+...|++++|+.
T Consensus       233 p~~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~  297 (537)
T 3fp2_A          233 TVDDPLRENAALALCYTGIFHFLKNNL--------------LDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFK  297 (537)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTCH--------------HHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHH
T ss_pred             CCcchhhHHHHHHHHHHHHHHHhcccH--------------HHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHH
Confidence            6542          2334444444432              2233332  3345566 44444333 3344677777777


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        138 CYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF  217 (673)
Q Consensus       138 ~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~  217 (673)
                      +|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++.++|.++...|++++|+..|+++++.+|++
T Consensus       298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  377 (537)
T 3fp2_A          298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL  377 (537)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc----------CCCc---------ccc
Q psy17691        218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD------AHSNLASIHKDS----------GKRG---------FFI  272 (673)
Q Consensus       218 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~------a~~~La~~~~~~----------g~~~---------l~l  272 (673)
                      +.++.++|.++...|++++|+.+|++++++.|++..      .+.+++.++...          |+++         +.+
T Consensus       378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  457 (537)
T 3fp2_A          378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL  457 (537)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence            777777777777777777777777777776654432      244555666666          6555         556


Q ss_pred             CCCCHHHHHHHHHH
Q psy17691        273 RTDLNSAYFWLLLL  286 (673)
Q Consensus       273 ~p~~~~a~~~l~~~  286 (673)
                      +|+++.++.+++..
T Consensus       458 ~p~~~~~~~~l~~~  471 (537)
T 3fp2_A          458 DPRSEQAKIGLAQL  471 (537)
T ss_dssp             CTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            77777777666643

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.85  E-value=7.7e-20  Score=202.37  Aligned_cols=173  Identities=16%  Similarity=0.232  Sum_probs=99.1

Q ss_pred             cCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17691        112 LSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL  190 (673)
Q Consensus       112 l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  190 (673)
                      ..|++...+... ..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++.++
T Consensus       299 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  378 (514)
T 2gw1_A          299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF  378 (514)
T ss_dssp             TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred             cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHH
Confidence            344444444333 3333455666666666666666665555666666666666666666666666666666555566666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRIQPSFAD------AYSNMGNTLKE---MQDIQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~~p~~~~------~~~~lg~~~~~---~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      |.++...|++++|+..|+++++..|++..      ++.++|.++..   .|++++|+.+|+++++.+|++..++..+|.+
T Consensus       379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  458 (514)
T 2gw1_A          379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM  458 (514)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            66666666666666666666655555433      55566666666   5666666666666666666666666666666


Q ss_pred             HHHcCCCc---------cccCCCCHHHHHHHH
Q psy17691        262 HKDSGKRG---------FFIRTDLNSAYFWLL  284 (673)
Q Consensus       262 ~~~~g~~~---------l~l~p~~~~a~~~l~  284 (673)
                      +...|+++         +.++|+++.++..+.
T Consensus       459 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  490 (514)
T 2gw1_A          459 KLQQEDIDEAITLFEESADLARTMEEKLQAIT  490 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            66666554         445555555544443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.85  E-value=1.8e-20  Score=199.03  Aligned_cols=215  Identities=18%  Similarity=0.263  Sum_probs=163.9

Q ss_pred             HHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCC
Q psy17691         40 DAYCNLANALKEKGQINVLHKPPYKYTRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSP  114 (673)
Q Consensus        40 ~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p  114 (673)
                      ..++.+|..+...|++++|.. .++.+....|.+.   ..++.++...++.              .+++..+  .+.++|
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~lg~~~~~~g~~--------------~~A~~~~~~al~~~p  130 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTIL-FMEAAILQDPGDAEAWQFLGITQAENENE--------------QAAIVALQRCLELQP  130 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------HHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCcCCHHHHHHHHHHHHHCCCH--------------HHHHHHHHHHHhcCC
Confidence            345555555555666555553 4444444455442   3445555554432              2233333  445678


Q ss_pred             CChhHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHhhCCC-
Q psy17691        115 DDGTTFSYII-SVLLLIQVSEAEECYNTALRLCPTHADSLNNL----------ANIKREQGYIEEATRLYLKALEVFPE-  182 (673)
Q Consensus       115 ~~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~L----------g~~~~~~g~~~eA~~~~~~al~~~p~-  182 (673)
                      ++..++..++ .+...|++++|+.+|+++++++|++..++..+          |.++...|++++|+.+|+++++.+|+ 
T Consensus       131 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  210 (365)
T 4eqf_A          131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM  210 (365)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred             CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence            8888875554 45569999999999999999998876666554          89999999999999999999999999 


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        183 -FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       183 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                       ++.++.++|.++...|++++|++.|+++++.+|+++.+|.++|.+|..+|++++|+.+|+++++++|++..++.++|.+
T Consensus       211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  290 (365)
T 4eqf_A          211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS  290 (365)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCc
Q psy17691        262 HKDSGKRG  269 (673)
Q Consensus       262 ~~~~g~~~  269 (673)
                      +...|+++
T Consensus       291 ~~~~g~~~  298 (365)
T 4eqf_A          291 CINLGAYR  298 (365)
T ss_dssp             HHHHTCCH
T ss_pred             HHHCCCHH
Confidence            99999987

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=9.1e-20  Score=182.29  Aligned_cols=229  Identities=19%  Similarity=0.157  Sum_probs=167.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      ++++|+..|+++++.+ +++.++..+|.++...|+++.+..++..+.........+.      .    ..+.....++.+
T Consensus        20 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~----~~~~~~~~l~~~   88 (258)
T 3uq3_A           20 QFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY------K----VISKSFARIGNA   88 (258)
T ss_dssp             CHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH------H----HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch------H----HHHHHHHHHHHH
Confidence            5789999999999999 9999999999999999985555444444433322110000      0    000001222333


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLAN  158 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~  158 (673)
                      +...++..              +++..+  ...+.|+       ...+...|++++|+..++++++.+|++..++..+|.
T Consensus        89 ~~~~~~~~--------------~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  147 (258)
T 3uq3_A           89 YHKLGDLK--------------KTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGK  147 (258)
T ss_dssp             HHHTTCHH--------------HHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHHcccHH--------------HHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence            33333211              112211  1222333       223455678888888888888888888888999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        159 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL  238 (673)
Q Consensus       159 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~  238 (673)
                      ++...|++++|+.+|+++++.+|.+..++.++|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+
T Consensus       148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  227 (258)
T 3uq3_A          148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL  227 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99999999999999999999999988899999999999999999999999999999998999999999999999999999


Q ss_pred             HHHHHHHHhC------CCCHHHHHHHHHH
Q psy17691        239 QCYSRAIQIN------PGFADAHSNLASI  261 (673)
Q Consensus       239 ~~~~~Al~l~------p~~~~a~~~La~~  261 (673)
                      .+|+++++++      |++..++..++.+
T Consensus       228 ~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          228 ETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            9999999888      8888887777654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.84  E-value=9.8e-20  Score=173.85  Aligned_cols=161  Identities=20%  Similarity=0.214  Sum_probs=151.8

Q ss_pred             ChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17691        116 DGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL  194 (673)
Q Consensus       116 ~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  194 (673)
                      ....|.. +..+...|++++|+.+|+++++++|+++.++..+|.+|..+|++++|+..+++++...|++..++..+|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            4455654 455667999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-----
Q psy17691        195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG-----  269 (673)
Q Consensus       195 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~-----  269 (673)
                      ...+++++|+..++++++++|++..++..+|.++..+|++++|+++|+++++++|++..++.++|.+|..+|+++     
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999997     


Q ss_pred             ----cccCCCC
Q psy17691        270 ----FFIRTDL  276 (673)
Q Consensus       270 ----l~l~p~~  276 (673)
                          ++++|++
T Consensus       164 ~~~al~~~p~~  174 (184)
T 3vtx_A          164 FKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHTTHHH
T ss_pred             HHHHHhCCccC
Confidence                6677764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.84  E-value=1e-19  Score=180.66  Aligned_cols=142  Identities=21%  Similarity=0.229  Sum_probs=94.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA  203 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  203 (673)
                      ..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            33445666777777777777776666666777777777777777777777777777776666677777777777777777


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        204 LLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       204 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      +..++++++.+|++..++..+|.++..+|++++|+.+|+++++++|++..++..++.+....
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~  240 (243)
T 2q7f_A          179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH  240 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence            77777777776666666777777777777777777777777777777666666665554433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.84  E-value=4.9e-20  Score=186.65  Aligned_cols=223  Identities=14%  Similarity=0.066  Sum_probs=168.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      ++++|+..|+++++.+|++..++..+|.++...|+++.+..++..+..   ...                          
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~--------------------------   68 (272)
T 3u4t_A           18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS---KVN--------------------------   68 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT---TSC--------------------------
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---ccC--------------------------
Confidence            578999999999999999999999999999999976555544443322   000                          


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHHHHhcCCC-ChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPD-DGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLAN  158 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~-~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~  158 (673)
                                                      ++. ...++ ..+..+...|++++|+.+|+++++.+|++..++..+|.
T Consensus        69 --------------------------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  116 (272)
T 3u4t_A           69 --------------------------------ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS  116 (272)
T ss_dssp             --------------------------------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred             --------------------------------chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence                                            001 12223 33445556788888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HH
Q psy17691        159 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD---IQ  235 (673)
Q Consensus       159 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~  235 (673)
                      ++...|++++|+.+|+++++.+|.+..+++++|...+..+++++|++.|+++++.+|++..++..+|.++..+|+   ++
T Consensus       117 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~  196 (272)
T 3u4t_A          117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG  196 (272)
T ss_dssp             HHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSC
T ss_pred             HHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhH
Confidence            888888888888888888888888888888888445555688888888888888888888888888888888887   77


Q ss_pred             HHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHH
Q psy17691        236 GALQCYSRAIQIN---PG-----FADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLL  284 (673)
Q Consensus       236 eA~~~~~~Al~l~---p~-----~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~  284 (673)
                      +|+..|++++++.   |+     ...++..+|.++...|+++         ++++|+++.++-.++
T Consensus       197 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~  262 (272)
T 3u4t_A          197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK  262 (272)
T ss_dssp             TTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence            7888888888775   43     2357777888888888876         667888887765554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.84  E-value=1.7e-19  Score=198.20  Aligned_cols=256  Identities=18%  Similarity=0.177  Sum_probs=183.3

Q ss_pred             CHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCCC-----------------------cHHHHHHHHHH
Q psy17691          1 LIDLAIDTYRRAIEL---------QPNFPDAYCNLANALKEKGQPN-----------------------FPDAYCNLANA   48 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l---------~P~~~~a~~~Lg~~~~~~g~~~-----------------------~a~a~~~la~~   48 (673)
                      ++++|+++|++|+++         +|....+|.++|.+|..+|+.+                       .+..+..+|.+
T Consensus        66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~  145 (472)
T 4g1t_A           66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT  145 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence            579999999999987         7888999999999999999843                       34555556666


Q ss_pred             HHHcC--ChhhhcCChhhHHhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHH
Q psy17691         49 LKEKG--QINVLHKPPYKYTRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFS  121 (673)
Q Consensus        49 l~~~g--~~~~A~~~~~~~~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~  121 (673)
                      +...+  ++++|.. ++++++.+.|++.   ..++.+...++...           ....+++.+  ++.++|++..++.
T Consensus       146 ~~~~~~~~y~~A~~-~~~kal~~~p~~~~~~~~~~~~~~~l~~~~-----------~~~~al~~~~~al~l~p~~~~~~~  213 (472)
T 4g1t_A          146 RLKCGGNQNERAKV-CFEKALEKKPKNPEFTSGLAIASYRLDNWP-----------PSQNAIDPLRQAIRLNPDNQYLKV  213 (472)
T ss_dssp             HHHHCTTHHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHHHSC-----------CCCCTHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHccccHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHhcCch-----------HHHHHHHHHHHHhhcCCcchHHHH
Confidence            65543  5778875 7888889999875   23343332222111           112233333  4567788877775


Q ss_pred             HHHHHH-----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17691        122 YIISVL-----LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ  196 (673)
Q Consensus       122 ~~~~~~-----~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  196 (673)
                      .++..+     ..+++++|+.+|+++++.+|++..++.++|.+|...|++++|+..|+++++.+|++..++.++|.+|..
T Consensus       214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~  293 (472)
T 4g1t_A          214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA  293 (472)
T ss_dssp             HHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            554332     246788888888888888888888888888888888888888888888888888888888888887754


Q ss_pred             c-------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H
Q psy17691        197 Q-------------------GKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD---A  254 (673)
Q Consensus       197 ~-------------------g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~---a  254 (673)
                      +                   +.+++|+..|+++++++|.+..++.++|.++..+|++++|+.+|++++++++++..   .
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~  373 (472)
T 4g1t_A          294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL  373 (472)
T ss_dssp             HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence            3                   33677888888888888888888888888888888888888888888888776543   3


Q ss_pred             HHHHHHHH-HHcCCC
Q psy17691        255 HSNLASIH-KDSGKR  268 (673)
Q Consensus       255 ~~~La~~~-~~~g~~  268 (673)
                      +.+++.+. ...|++
T Consensus       374 ~~~~~~~~~~~~~~~  388 (472)
T 4g1t_A          374 HLRYGNFQLYQMKCE  388 (472)
T ss_dssp             HHHHHHHHHHTSSCH
T ss_pred             HHHHHHHHHHHCCCH
Confidence            45555443 344544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=3.2e-19  Score=184.72  Aligned_cols=230  Identities=12%  Similarity=0.007  Sum_probs=182.6

Q ss_pred             CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCCcHH------------HHHHHHHHHHHcCChhhhcCChhhHHh
Q psy17691          1 LIDLAIDTYRRAIELQPNF-PDAYCNLANALKEKGQPNFPD------------AYCNLANALKEKGQINVLHKPPYKYTR   67 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~-~~a~~~Lg~~~~~~g~~~~a~------------a~~~la~~l~~~g~~~~A~~~~~~~~~   67 (673)
                      +|++|+..+++....+|++ .++...++.+|..+|+++.+.            ++..++..+...++.+           
T Consensus        14 ~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~-----------   82 (291)
T 3mkr_A           14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRD-----------   82 (291)
T ss_dssp             CHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHH-----------
T ss_pred             HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHH-----------
Confidence            4788898888888888877 468888889999888633222            2222333333222222           


Q ss_pred             hcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHH--h--cCCCChhHHHHH-HHHHHcCCHHHHHHHHHHH
Q psy17691         68 ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY--A--LSPDDGTTFSYI-ISVLLLIQVSEAEECYNTA  142 (673)
Q Consensus        68 ~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~--~--l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~a  142 (673)
                                                         .++..+..  .  .+|++...+..+ ..+...|++++|+.+|++ 
T Consensus        83 -----------------------------------~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-  126 (291)
T 3mkr_A           83 -----------------------------------AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-  126 (291)
T ss_dssp             -----------------------------------HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-
T ss_pred             -----------------------------------HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-
Confidence                                               23333321  2  358888887655 455679999999999998 


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691        143 LRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA--SVLQQQGKLTDALLHYKEAIRIQPSFADA  220 (673)
Q Consensus       143 l~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~eA~~~~~~al~~~p~~~~~  220 (673)
                          |++.+++..+|.++.++|++++|++.|+++++.+|++.......+  .++...|++++|+..|+++++.+|+++.+
T Consensus       127 ----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~  202 (291)
T 3mkr_A          127 ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLL  202 (291)
T ss_dssp             ----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHH
Confidence                899999999999999999999999999999999999865444333  33445589999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc----------cccCCCCHHHHH
Q psy17691        221 YSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG----------FFIRTDLNSAYF  281 (673)
Q Consensus       221 ~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~----------l~l~p~~~~a~~  281 (673)
                      ++++|.++.++|++++|+..|+++++++|++++++.++|.++...|+..          ++++|+++.+.-
T Consensus       203 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            9999999999999999999999999999999999999999999999985          568899887653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.83  E-value=7.6e-20  Score=202.71  Aligned_cols=204  Identities=16%  Similarity=0.142  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQP-NFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~-~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      +++|+..++++....|+++.+++.+|.++...|++ +.+..++..+                                  
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~a----------------------------------  129 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA----------------------------------  129 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHH----------------------------------
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHH----------------------------------
Confidence            45666677777777777777777777777777755 4444443332                                  


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANI  159 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~  159 (673)
                                                   +.++|++..+|..+ ..++..|++++|+.+|+++++++|+ ..++.++|.+
T Consensus       130 -----------------------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~  179 (474)
T 4abn_A          130 -----------------------------VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMV  179 (474)
T ss_dssp             -----------------------------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHH
T ss_pred             -----------------------------HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHH
Confidence                                         23456777777555 4556799999999999999999999 7999999999


Q ss_pred             HHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHH
Q psy17691        160 KREQ---------GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ--------GKLTDALLHYKEAIRIQP---SFAD  219 (673)
Q Consensus       160 ~~~~---------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~eA~~~~~~al~~~p---~~~~  219 (673)
                      +..+         |++++|+.+|+++++++|++..+|+++|.+|..+        |++++|+++|+++++++|   +++.
T Consensus       180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  259 (474)
T 4abn_A          180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD  259 (474)
T ss_dssp             HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred             HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH
Confidence            9999         9999999999999999999999999999999999        999999999999999999   9999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +|+++|.+|..+|++++|+++|+++++++|++..++.+++.++..+|+++
T Consensus       260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~  309 (474)
T 4abn_A          260 LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT  309 (474)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.82  E-value=1.1e-18  Score=173.01  Aligned_cols=176  Identities=21%  Similarity=0.180  Sum_probs=163.0

Q ss_pred             cCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17691        112 LSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL  190 (673)
Q Consensus       112 l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  190 (673)
                      ..|++...+... ..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus        52 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  131 (243)
T 2q7f_A           52 ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML  131 (243)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            456666666444 5566799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG-  269 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~-  269 (673)
                      |.++...|++++|+..++++++..|++..++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|+++ 
T Consensus       132 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  211 (243)
T 2q7f_A          132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREK  211 (243)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             --------cccCCCCHHHHHHHHHHh
Q psy17691        270 --------FFIRTDLNSAYFWLLLLD  287 (673)
Q Consensus       270 --------l~l~p~~~~a~~~l~~~~  287 (673)
                              ++++|+++.++..++.+.
T Consensus       212 A~~~~~~~~~~~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          212 ALEMLDKAIDIQPDHMLALHAKKLLG  237 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred             HHHHHHHHHccCcchHHHHHHHHHHH
Confidence                    678999999988876443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.82  E-value=4.7e-19  Score=175.38  Aligned_cols=185  Identities=15%  Similarity=0.123  Sum_probs=159.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhhcCCCcccccccc
Q psy17691         16 QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQS   95 (673)
Q Consensus        16 ~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~   95 (673)
                      .+.++.+++.+|.++...|+++.+..++..+..                                               
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-----------------------------------------------   35 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLK-----------------------------------------------   35 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------------------
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----------------------------------------------
Confidence            466789999999999999976555555544332                                               


Q ss_pred             cCCCCchhHHHHHHHhcCC-CChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691         96 VPGMHNKSRVEIFCYALSP-DDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLY  173 (673)
Q Consensus        96 ~~~~~~~~a~~~~~~~l~p-~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~  173 (673)
                                      +.| .+...+ ..+.++...|++++|+.+|+++++.+|++..++..+|.++..+|++++|+..|
T Consensus        36 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   99 (228)
T 4i17_A           36 ----------------LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATL   99 (228)
T ss_dssp             ----------------HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----------------ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHH
Confidence                            222 333343 44556677999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCH----------
Q psy17691        174 LKALEVFPEFA-------AAHSNLASVLQQQGKLTDALLHYKEAIRIQPS--FADAYSNMGNTLKEMQDI----------  234 (673)
Q Consensus       174 ~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~----------  234 (673)
                      +++++++|++.       .++.++|.++...|++++|++.|+++++++|+  ++.++.++|.+|..+|+.          
T Consensus       100 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  179 (228)
T 4i17_A          100 TEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLAS  179 (228)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999998       67999999999999999999999999999999  999999999999999988          


Q ss_pred             -----------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        235 -----------------QGALQCYSRAIQINPGFADAHSNLASIHK  263 (673)
Q Consensus       235 -----------------~eA~~~~~~Al~l~p~~~~a~~~La~~~~  263 (673)
                                       ++|+.+|+++++++|++..+...++.+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          180 SNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence                             99999999999999999999998887754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.82  E-value=1.8e-19  Score=208.51  Aligned_cols=139  Identities=29%  Similarity=0.484  Sum_probs=131.0

Q ss_pred             hcCCCChhHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy17691        111 ALSPDDGTTFSYII-SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN  189 (673)
Q Consensus       111 ~l~p~~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  189 (673)
                      +++|++..++..++ .+..+|++++|+.+|+++++++|+++.+++++|.+|.++|++++|+++|+++++++|++..++++
T Consensus        37 ~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~  116 (723)
T 4gyw_A           37 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN  116 (723)
T ss_dssp             HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            45678888886554 55569999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       190 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p  249 (673)
                      +|.+|..+|++++|++.|+++++++|+++.++.++|.+|..+|++++|++.|++++++.|
T Consensus       117 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA  176 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence            999999999999999999999999999999999999999999999999999999998754

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.81  E-value=2.2e-18  Score=172.49  Aligned_cols=205  Identities=20%  Similarity=0.135  Sum_probs=167.7

Q ss_pred             HhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhhcCCCccccc
Q psy17691         14 ELQPNF-PDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHL   92 (673)
Q Consensus        14 ~l~P~~-~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~l~~~~~a~~   92 (673)
                      +.+|.+ +.+++.+|.++...|+++.+..++..+..                                            
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------------------------------------   65 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE--------------------------------------------   65 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHH--------------------------------------------
T ss_pred             ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh--------------------------------------------
Confidence            456776 88999999999999977766665544332                                            


Q ss_pred             ccccCCCCchhHHHHHHHhcCCCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691         93 MQSVPGMHNKSRVEIFCYALSPDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATR  171 (673)
Q Consensus        93 ~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~  171 (673)
                                         ..|+...++.. +..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.
T Consensus        66 -------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  126 (252)
T 2ho1_A           66 -------------------IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQ  126 (252)
T ss_dssp             -------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             -------------------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHH
Confidence                               23444455543 4455668899999999999999999888899999999999999999999


Q ss_pred             HHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        172 LYLKALE--VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       172 ~~~~al~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p  249 (673)
                      +++++++  ..|.+..++.++|.++...|++++|+++|+++++..|++..++..+|.++..+|++++|+.+|+++++..|
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  206 (252)
T 2ho1_A          127 RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG  206 (252)
T ss_dssp             HHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            9999988  77888888999999999999999999999999999998888999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHH
Q psy17691        250 GFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYF  281 (673)
Q Consensus       250 ~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~  281 (673)
                      ++..++..++.++...|+++         +++.|+++.+..
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  247 (252)
T 2ho1_A          207 QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE  247 (252)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            88888888999988888887         566777776543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.81  E-value=3.8e-18  Score=166.67  Aligned_cols=170  Identities=19%  Similarity=0.104  Sum_probs=139.8

Q ss_pred             CCCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHH
Q psy17691        113 SPDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQ-GYIEEATRLYLKALE--VFPEFAAAHS  188 (673)
Q Consensus       113 ~p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~-g~~~eA~~~~~~al~--~~p~~~~~~~  188 (673)
                      .|++...+.. +..+...|++++|+.+|+++++.+|++..++..+|.++... |++++|+..++++++  ..|.+..++.
T Consensus        38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  117 (225)
T 2vq2_A           38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL  117 (225)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHH
Confidence            3444555543 34455688899999999999988888888888899999888 899999999999888  6666688888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP-GFADAHSNLASIHKDSGK  267 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p-~~~~a~~~La~~~~~~g~  267 (673)
                      ++|.++...|++++|+..++++++..|++..++..+|.++...|++++|+.+|+++++..| ++...+..++.++...|+
T Consensus       118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (225)
T 2vq2_A          118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN  197 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence            8999999999999999999999988888888888999999999999999999999988888 888888888888888888


Q ss_pred             Cc---------cccCCCCHHHHHH
Q psy17691        268 RG---------FFIRTDLNSAYFW  282 (673)
Q Consensus       268 ~~---------l~l~p~~~~a~~~  282 (673)
                      .+         +...|+++.+...
T Consensus       198 ~~~a~~~~~~~~~~~p~~~~~~~~  221 (225)
T 2vq2_A          198 AQAAYEYEAQLQANFPYSEELQTV  221 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHH
Confidence            76         3467777766543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.80  E-value=8e-20  Score=169.65  Aligned_cols=140  Identities=14%  Similarity=0.097  Sum_probs=134.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691        128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHY  207 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~  207 (673)
                      ..|++++|+..+++++..+|+++.+++.+|.+|.+.|++++|+++|+++++++|+++.+|+++|.++...|++++|+.+|
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~   88 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY   88 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        208 KEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC-YSRAIQINPGFADAHSNLASIHKDSGK  267 (673)
Q Consensus       208 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~-~~~Al~l~p~~~~a~~~La~~~~~~g~  267 (673)
                      +++++++|+++.++.++|.+|.++|++++|... +++|++++|+++.++..++.++...|+
T Consensus        89 ~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           89 RRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999887765 599999999999999999999988875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.80  E-value=1.5e-18  Score=171.71  Aligned_cols=153  Identities=18%  Similarity=0.153  Sum_probs=144.4

Q ss_pred             ChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy17691        116 DGTTF-SYIISVLLLIQVSEAEECYNTALRLCP-THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV  193 (673)
Q Consensus       116 ~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  193 (673)
                      ++..+ ..+..++..|++++|+..|+++++++| .+..+++++|.++...|++++|+.+|+++++.+|++..++.++|.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            44555 555667789999999999999999999 8999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFA-------DAYSNMGNTLKEMQDIQGALQCYSRAIQINPG--FADAHSNLASIHKD  264 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~--~~~a~~~La~~~~~  264 (673)
                      +..+|++++|+..|+++++++|+++       .++.++|.++..+|++++|+.+|+++++++|+  +..++.++|.++..
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  165 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN  165 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence            9999999999999999999999998       67999999999999999999999999999999  99999999999998


Q ss_pred             cCCC
Q psy17691        265 SGKR  268 (673)
Q Consensus       265 ~g~~  268 (673)
                      .|+.
T Consensus       166 ~~~~  169 (228)
T 4i17_A          166 NGAD  169 (228)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8877

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.80  E-value=8.7e-18  Score=174.96  Aligned_cols=212  Identities=12%  Similarity=0.118  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCh-------hhhcCChhhHHhhcCCCchh
Q psy17691          3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQI-------NVLHKPPYKYTRELAPGNRI   75 (673)
Q Consensus         3 ~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~-------~~A~~~~~~~~~~l~p~~~~   75 (673)
                      ++|+..|+++++.+|+++++|+.+|..+...++            .+...|+.       ++|.. .++.+...      
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~------------~l~~~g~~~~~~~~~~~A~~-~~~rAl~~------   93 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK------------LLAEKGDMNNAKLFSDEAAN-IYERAIST------   93 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------HHHHTSCCHHHHHHHHHHHH-HHHHHHTT------
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch------------hhhhccchhhcccchHHHHH-HHHHHHHH------
Confidence            689999999999999999999999999876531            12223332       33322 23333330      


Q ss_pred             hhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHH-HH
Q psy17691         76 RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYII-SVLLLIQVSEAEECYNTALRLCPTHAD-SL  153 (673)
Q Consensus        76 ~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p~~~~-a~  153 (673)
                                                          ++|++..+|...+ .+...|++++|+..|++++++.|+++. +|
T Consensus        94 ------------------------------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  137 (308)
T 2ond_A           94 ------------------------------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY  137 (308)
T ss_dssp             ------------------------------------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHH
T ss_pred             ------------------------------------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHH
Confidence                                                2344444443322 223355555555555555555555544 55


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        154 NNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ-QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ  232 (673)
Q Consensus       154 ~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g  232 (673)
                      ..+|.++.+.|++++|...|+++++.+|.+..+|...+.+... .|++++|++.|+++++.+|+++.+|.++|.++.++|
T Consensus       138 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  217 (308)
T 2ond_A          138 IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN  217 (308)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            5555555555555555555555555555554444444433322 455555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHcCCCc
Q psy17691        233 DIQGALQCYSRAIQI---NP-GFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       233 ~~~eA~~~~~~Al~l---~p-~~~~a~~~La~~~~~~g~~~  269 (673)
                      ++++|+..|+++++.   .| +...+|..++..+...|+.+
T Consensus       218 ~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~  258 (308)
T 2ond_A          218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA  258 (308)
T ss_dssp             CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred             CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            555555555555553   33 24445555555555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=5.7e-18  Score=169.15  Aligned_cols=159  Identities=19%  Similarity=0.174  Sum_probs=123.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------
Q psy17691        126 VLLLIQVSEAEECYNTALRLCPTH-------ADSLNNLANIKREQGYIEEATRLYLKALE--------------------  178 (673)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~--------------------  178 (673)
                      +...|++++|+.+++++++.+|++       ..++..+|.++...|++++|+.+|+++++                    
T Consensus        48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~  127 (258)
T 3uq3_A           48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKK  127 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHH
Confidence            334555555555555555554443       44555555555555555555555555555                    


Q ss_pred             ------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        179 ------VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       179 ------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~  252 (673)
                            .+|.+..++..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+.+|+++++.+|++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  207 (258)
T 3uq3_A          128 AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV  207 (258)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH
Confidence                  77888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCc---------cccC------CCCHHHHHHHH
Q psy17691        253 DAHSNLASIHKDSGKRG---------FFIR------TDLNSAYFWLL  284 (673)
Q Consensus       253 ~a~~~La~~~~~~g~~~---------l~l~------p~~~~a~~~l~  284 (673)
                      .++..+|.++...|+++         ++++      |++..++..+.
T Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~  254 (258)
T 3uq3_A          208 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY  254 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence            99999999999999987         4555      66666555443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.79  E-value=1.7e-18  Score=155.72  Aligned_cols=122  Identities=25%  Similarity=0.284  Sum_probs=115.9

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691        141 TALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA  220 (673)
Q Consensus       141 ~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  220 (673)
                      ++..++|+.++++.++|..++++|+|++|+++|+++++++|.++.+|+++|.++..+|++++|+..|+++++++|++..+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        221 YSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       221 ~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~  262 (673)
                      |.++|.++..+|++++|+.+|+++++++|++.+++.+|+.++
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999998874

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=9e-18  Score=173.96  Aligned_cols=178  Identities=21%  Similarity=0.261  Sum_probs=154.9

Q ss_pred             HhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHH
Q psy17691        110 YALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNL--------------AN-IKREQGYIEEATRLY  173 (673)
Q Consensus       110 ~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~L--------------g~-~~~~~g~~~eA~~~~  173 (673)
                      +...|++...+..+ ..+...|++++|+..|+++++.+|++...+..+              +. ++...|++++|+..+
T Consensus        82 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  161 (327)
T 3cv0_A           82 RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL  161 (327)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHH
T ss_pred             HhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence            44577777777554 455679999999999999999999998887777              66 688899999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        174 LKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       174 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                      +++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++.++|.++...|++++|+.+|+++++.+|++..
T Consensus       162 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  241 (327)
T 3cv0_A          162 HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR  241 (327)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCc---------cccCCC------------CHHHHHHHHHHh
Q psy17691        254 AHSNLASIHKDSGKRG---------FFIRTD------------LNSAYFWLLLLD  287 (673)
Q Consensus       254 a~~~La~~~~~~g~~~---------l~l~p~------------~~~a~~~l~~~~  287 (673)
                      ++.++|.++...|+++         +.+.|+            +..++..++.+.
T Consensus       242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  296 (327)
T 3cv0_A          242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL  296 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH
Confidence            9999999999999987         566777            677777776543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.78  E-value=1.9e-18  Score=189.94  Aligned_cols=258  Identities=17%  Similarity=0.073  Sum_probs=164.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---C---------------CCcHHHHHHHHHHHHHcC----Chhhhc
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKG---Q---------------PNFPDAYCNLANALKEKG----QINVLH   59 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g---~---------------~~~a~a~~~la~~l~~~g----~~~~A~   59 (673)
                      |++|+.+|+++++++|++++++..+|.++...+   +               |+...++..+|..+...+    ++++|.
T Consensus       154 y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~  233 (472)
T 4g1t_A          154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE  233 (472)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            789999999999999999999999999976654   2               555666666666655543    344444


Q ss_pred             CChhhHHhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHHH------
Q psy17691         60 KPPYKYTRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVLL------  128 (673)
Q Consensus        60 ~~~~~~~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~~------  128 (673)
                      . .++.+....|...   ..++.++...+...              .++..+  ++...|++..++..++..+.      
T Consensus       234 ~-~~~~al~~~~~~~~~~~~lg~~~~~~~~~~--------------~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~  298 (472)
T 4g1t_A          234 K-LVEEALEKAPGVTDVLRSAAKFYRRKDEPD--------------KAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQV  298 (472)
T ss_dssp             H-HHHHHHHHCSSCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHhCccHHHHHHHHHHHHHHcCchH--------------HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHh
Confidence            3 4555666666653   34566666655432              233333  44567777777655544331      


Q ss_pred             --------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHH
Q psy17691        129 --------------LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA---AHSNLA  191 (673)
Q Consensus       129 --------------~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~la  191 (673)
                                    .+.+++|+..|+++++.+|.+..++..+|.++...|++++|+.+|+++++++|++..   ++.++|
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~  378 (472)
T 4g1t_A          299 MNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYG  378 (472)
T ss_dssp             HHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence                          234677888888888888888888888888888888888888888888888776543   355666


Q ss_pred             HHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-
Q psy17691        192 SVL-QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG-  269 (673)
Q Consensus       192 ~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~-  269 (673)
                      .++ ...|++++|+..|+++++++|++......          .+.+...++++++.+|+++.++.+||.+|...|+++ 
T Consensus       379 ~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~  448 (472)
T 4g1t_A          379 NFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQ  448 (472)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            543 46678888888888888777765432221          233344556666667777778888888888877776 


Q ss_pred             --------cccCCCCHHHHHHHH
Q psy17691        270 --------FFIRTDLNSAYFWLL  284 (673)
Q Consensus       270 --------l~l~p~~~~a~~~l~  284 (673)
                              +++.|.+|.+..++|
T Consensus       449 A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          449 ADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHhcCCCCCcHhhcCC
Confidence                    667777777766654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.77  E-value=1.5e-18  Score=201.01  Aligned_cols=138  Identities=16%  Similarity=0.109  Sum_probs=131.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK  208 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  208 (673)
                      .|++++|+..|+++++.+|++..+++++|.++..+|++++|+..|+++++++|++..+++++|.++..+|++++ ++.|+
T Consensus       446 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~  524 (681)
T 2pzi_A          446 LGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQ  524 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred             cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence            44899999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK  267 (673)
Q Consensus       209 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~  267 (673)
                      ++++++|++..+++++|.++.++|++++|+++|+++++++|++..++.+++.++...++
T Consensus       525 ~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          525 TVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            99999999999999999999999999999999999999999999999999999877665

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.76  E-value=8e-18  Score=186.40  Aligned_cols=176  Identities=20%  Similarity=0.209  Sum_probs=164.3

Q ss_pred             hcCCCChhHHHHHHH-HHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy17691        111 ALSPDDGTTFSYIIS-VLLLIQV-SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS  188 (673)
Q Consensus       111 ~l~p~~~~~~~~~~~-~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  188 (673)
                      ...|+....+...+. +...|++ ++|+.+|+++++++|++..+++.+|.+|..+|++++|+.+|+++++++|+ ..++.
T Consensus        96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~  174 (474)
T 4abn_A           96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQ  174 (474)
T ss_dssp             TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHH
T ss_pred             ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHH
Confidence            456777777765554 5569999 99999999999999999999999999999999999999999999999999 79999


Q ss_pred             HHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC--
Q psy17691        189 NLASVLQQQ---------GKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM--------QDIQGALQCYSRAIQINP--  249 (673)
Q Consensus       189 ~la~~~~~~---------g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~eA~~~~~~Al~l~p--  249 (673)
                      ++|.++..+         |++++|++.|+++++++|++..+|+++|.+|..+        |++++|+.+|+++++++|  
T Consensus       175 ~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  254 (474)
T 4abn_A          175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA  254 (474)
T ss_dssp             HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence            999999999         9999999999999999999999999999999999        999999999999999999  


Q ss_pred             -CCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHHHHh
Q psy17691        250 -GFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLLLLD  287 (673)
Q Consensus       250 -~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~~~  287 (673)
                       +++.+++++|.+|...|+++         ++++|+++.++.+++.+.
T Consensus       255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~  302 (474)
T 4abn_A          255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL  302 (474)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence             99999999999999999998         789999999998887543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=2.1e-16  Score=163.45  Aligned_cols=143  Identities=10%  Similarity=0.012  Sum_probs=124.5

Q ss_pred             CCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17691        114 PDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLA--NIKREQGYIEEATRLYLKALEVFPEFAAAHSNL  190 (673)
Q Consensus       114 p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg--~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  190 (673)
                      |++..++.. +..+..+|++++|+..|+++++.+|++.......+  .++...|++++|+..|+++++.+|+++.+++++
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l  206 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ  206 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            445556544 45566799999999999999999999875544434  334456899999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHH
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQG-ALQCYSRAIQINPGFADAHS  256 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e-A~~~~~~Al~l~p~~~~a~~  256 (673)
                      |.++..+|++++|++.|+++++.+|++++++.++|.++..+|+.++ +.++++++++++|+++.+.-
T Consensus       207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            9999999999999999999999999999999999999999999976 57899999999999987754

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.75  E-value=2.4e-17  Score=166.69  Aligned_cols=202  Identities=15%  Similarity=0.067  Sum_probs=162.6

Q ss_pred             CHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhh
Q psy17691          1 LIDLAIDTYRRAIELQPNF----PDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIR   76 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~----~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~   76 (673)
                      ++++|+..|+++++ .|.+    ..++..+|.++...|+++.+..++..+.                             
T Consensus        52 ~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~-----------------------------  101 (272)
T 3u4t_A           52 KYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV-----------------------------  101 (272)
T ss_dssp             CHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------------
T ss_pred             hHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-----------------------------
Confidence            47899999999999 4443    3447777777777775444444333322                             


Q ss_pred             hhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691         77 IGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNN  155 (673)
Q Consensus        77 l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  155 (673)
                                                        ..+|++..++..+ ..+...|++++|+.+|+++++.+|++..++..
T Consensus       102 ----------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  147 (272)
T 3u4t_A          102 ----------------------------------DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYE  147 (272)
T ss_dssp             ----------------------------------HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHH
T ss_pred             ----------------------------------hcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHH
Confidence                                              2345555666444 55667999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CC-----CHHHHHHH
Q psy17691        156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK---LTDALLHYKEAIRIQ---PS-----FADAYSNM  224 (673)
Q Consensus       156 Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~---p~-----~~~~~~~l  224 (673)
                      +|......+++++|+..|+++++.+|++..++..+|.++...|+   +++|+..|+++++..   |+     ...++..+
T Consensus       148 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  227 (272)
T 3u4t_A          148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI  227 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            99555566799999999999999999999999999999999999   999999999999986   44     23689999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG  266 (673)
Q Consensus       225 g~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g  266 (673)
                      |.+|..+|++++|+++|+++++++|++..++..++.+....+
T Consensus       228 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          228 AYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence            999999999999999999999999999999999887765443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.74  E-value=1.1e-17  Score=193.51  Aligned_cols=173  Identities=15%  Similarity=0.028  Sum_probs=162.4

Q ss_pred             cCCCChhHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy17691        112 LSPDDGTTFSYIISVLLLIQVSEAEECYNTAL--------RLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF  183 (673)
Q Consensus       112 l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al--------~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~  183 (673)
                      .+|++...+...+  +..|++++|++.|++++        +.+|++..+++.+|.++..+|++++|+..|+++++.+|++
T Consensus       389 ~~p~~~~a~~~~a--~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  466 (681)
T 2pzi_A          389 VDPTDVAASVLQA--TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR  466 (681)
T ss_dssp             CCTTSTTHHHHHH--TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCcchHHhhc--ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence            4667766665444  67899999999999999        9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK  263 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~  263 (673)
                      ..+|+++|.++..+|++++|++.|+++++++|+++.+++++|.++.++|++++ +++|+++++++|++..+++++|.++.
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~  545 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS  545 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             HcCCCc---------cccCCCCHHHHHHHHHHh
Q psy17691        264 DSGKRG---------FFIRTDLNSAYFWLLLLD  287 (673)
Q Consensus       264 ~~g~~~---------l~l~p~~~~a~~~l~~~~  287 (673)
                      .+|+++         ++++|++..++++++.+.
T Consensus       546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            999997         789999999999998664

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.74  E-value=3.7e-18  Score=182.52  Aligned_cols=268  Identities=18%  Similarity=0.161  Sum_probs=198.3

Q ss_pred             CHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCCC---------------------cHHHHHHHHHHHHHcCCh
Q psy17691          1 LIDLAIDTYRRAIELQPNF----PDAYCNLANALKEKGQPN---------------------FPDAYCNLANALKEKGQI   55 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~----~~a~~~Lg~~~~~~g~~~---------------------~a~a~~~la~~l~~~g~~   55 (673)
                      ++++|+..|+++++.+|++    ..++..+|.++...|+++                     .+.++..+|.++...|++
T Consensus        24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  103 (406)
T 3sf4_A           24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF  103 (406)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCH
Confidence            4789999999999999998    468999999999999732                     345677889999999999


Q ss_pred             hhhcCChhhHHhhcCCC---------chhhhhhhhhhcCCCcccccccccCCC------CchhHHHHHHH------hc--
Q psy17691         56 NVLHKPPYKYTRELAPG---------NRIRIGYVSSDFGNHPTSHLMQSVPGM------HNKSRVEIFCY------AL--  112 (673)
Q Consensus        56 ~~A~~~~~~~~~~l~p~---------~~~~l~~~~~~l~~~~~a~~~~~~~~~------~~~~a~~~~~~------~l--  112 (673)
                      ++|.. .++.+..+.+.         ....++.++...++.............      ....++..+..      ..  
T Consensus       104 ~~A~~-~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~  182 (406)
T 3sf4_A          104 DEAIV-CCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD  182 (406)
T ss_dssp             HHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHH-HHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99876 44444443322         124556666555541100000000000      01222222211      11  


Q ss_pred             CCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q psy17691        113 SPDDGTTFS-YIISVLLLIQVSEAEECYNTALRLCPTHA------DSLNNLANIKREQGYIEEATRLYLKALEVFPEF--  183 (673)
Q Consensus       113 ~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~--  183 (673)
                      .+.....+. .+..+...|++++|+.++++++++.+...      .++.++|.++...|++++|+.++++++++.+..  
T Consensus       183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  262 (406)
T 3sf4_A          183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD  262 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence            111223343 34455679999999999999999866543      389999999999999999999999999987765  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Q psy17691        184 ----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINP----  249 (673)
Q Consensus       184 ----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p----  249 (673)
                          ..++.++|.++...|++++|+.+|++++++.+..      ..++..+|.+|..+|++++|+.+|++++++.+    
T Consensus       263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  342 (406)
T 3sf4_A          263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD  342 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence                7789999999999999999999999999985544      67899999999999999999999999999843    


Q ss_pred             --CCHHHHHHHHHHHHHcCCCc
Q psy17691        250 --GFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       250 --~~~~a~~~La~~~~~~g~~~  269 (673)
                        ....++..++.++...|+..
T Consensus       343 ~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          343 KSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CcchhHHHHHHHHHHHHhhHhH
Confidence              33678999999999999875

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.74  E-value=3.7e-17  Score=165.40  Aligned_cols=195  Identities=12%  Similarity=0.118  Sum_probs=161.7

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhhcCCCcccc
Q psy17691         12 AIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSH   91 (673)
Q Consensus        12 AL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~l~~~~~a~   91 (673)
                      ..+++|+++..++.+|..+...|+++.+...+..+                                             
T Consensus         7 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~---------------------------------------------   41 (261)
T 3qky_A            7 SGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAV---------------------------------------------   41 (261)
T ss_dssp             ----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------------------------------
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH---------------------------------------------
Confidence            35678999999999999999999655444443322                                             


Q ss_pred             cccccCCCCchhHHHHHHHhcCCCC---hhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--
Q psy17691         92 LMQSVPGMHNKSRVEIFCYALSPDD---GTTF-SYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKRE--  162 (673)
Q Consensus        92 ~~~~~~~~~~~~a~~~~~~~l~p~~---~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~--  162 (673)
                                        +...|++   ..++ ..+.+++..|++++|+..|+++++.+|++   ..+++.+|.++..  
T Consensus        42 ------------------l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~  103 (261)
T 3qky_A           42 ------------------FTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLS  103 (261)
T ss_dssp             ------------------GGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHC
T ss_pred             ------------------HHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhc
Confidence                              1233444   4555 44566778999999999999999998854   6789999999999  


Q ss_pred             ------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q psy17691        163 ------QGYIEEATRLYLKALEVFPEFAAAH-----------------SNLASVLQQQGKLTDALLHYKEAIRIQPS---  216 (673)
Q Consensus       163 ------~g~~~eA~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~eA~~~~~~al~~~p~---  216 (673)
                            +|++++|+..|+++++.+|++..+.                 +++|.+|...|++++|+..|+++++..|+   
T Consensus       104 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  183 (261)
T 3qky_A          104 PPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW  183 (261)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             ccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence                  9999999999999999999986555                 88999999999999999999999999998   


Q ss_pred             CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCCc
Q psy17691        217 FADAYSNMGNTLKEM----------QDIQGALQCYSRAIQINPGFA---DAHSNLASIHKDSGKRG  269 (673)
Q Consensus       217 ~~~~~~~lg~~~~~~----------g~~~eA~~~~~~Al~l~p~~~---~a~~~La~~~~~~g~~~  269 (673)
                      ...++..+|.+|..+          |++++|+.+|+++++..|+++   .+...++.++..+++++
T Consensus       184 ~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~  249 (261)
T 3qky_A          184 ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE  249 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence            567999999999977          999999999999999999984   56777888887777654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.74  E-value=1.5e-16  Score=155.26  Aligned_cols=174  Identities=16%  Similarity=0.104  Sum_probs=158.8

Q ss_pred             CCCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17691        113 SPDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA  191 (673)
Q Consensus       113 ~p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  191 (673)
                      .|++...+.. +..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++.+|.+..++.++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   83 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG   83 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            4555666644 455667999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        192 SVLQQQ-GKLTDALLHYKEAIR--IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       192 ~~~~~~-g~~~eA~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      .++... |++++|+..++++++  ..|.+..++.++|.++...|++++|+.+|+++++..|++..++..+|.++...|++
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence            999999 999999999999999  66777899999999999999999999999999999999999999999999999999


Q ss_pred             c---------cccCC-CCHHHHHHHHHH
Q psy17691        269 G---------FFIRT-DLNSAYFWLLLL  286 (673)
Q Consensus       269 ~---------l~l~p-~~~~a~~~l~~~  286 (673)
                      +         +...| ++..++..++..
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~  191 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKI  191 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            7         67788 888877655533

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.74  E-value=1.2e-17  Score=154.98  Aligned_cols=109  Identities=12%  Similarity=0.074  Sum_probs=101.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL  204 (673)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  204 (673)
                      .++..|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|+++.+++++|.++...|++++|.
T Consensus        40 ~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa  119 (150)
T 4ga2_A           40 LYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRA  119 (150)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Confidence            33445589999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             HH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        205 LH-YKEAIRIQPSFADAYSNMGNTLKEMQD  233 (673)
Q Consensus       205 ~~-~~~al~~~p~~~~~~~~lg~~~~~~g~  233 (673)
                      +. ++++++++|+++.++..++.++..+|+
T Consensus       120 ~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          120 KYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            65 599999999999999999999998885

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.73  E-value=2.5e-17  Score=161.40  Aligned_cols=138  Identities=19%  Similarity=0.144  Sum_probs=116.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q psy17691        122 YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK--  199 (673)
Q Consensus       122 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~--  199 (673)
                      .+..+...|++++|+..|+++++++|++..++.++|.++..+|++++|+.+|+++++++|++..+++++|.+|+..|+  
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            345566788999999999999999999999999999999999999999999999999999999999999999987765  


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        200 LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       200 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      .+++...|++++...|. ..+++++|.++..+|++++|+.+|+++++++|+. .+...|..+
T Consensus       140 ~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i  199 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI  199 (208)
T ss_dssp             HHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence            45677888887643332 3478889999999999999999999999999974 455555554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.73  E-value=1.5e-16  Score=149.85  Aligned_cols=141  Identities=17%  Similarity=0.159  Sum_probs=128.7

Q ss_pred             CCCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17691        113 SPDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA  191 (673)
Q Consensus       113 ~p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  191 (673)
                      .|++...+.. +..+...|++++|+.+++++++.+|++..++..+|.++...|++++|+.+++++++.+|.+..++..+|
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  117 (186)
T 3as5_A           38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG  117 (186)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence            3445555544 445567999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       192 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                      .++...|++++|+..++++++..|++..++..+|.++..+|++++|+.+++++++.+|++..
T Consensus       118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred             HHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence            99999999999999999999999999999999999999999999999999999999887643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.73  E-value=6.6e-17  Score=163.40  Aligned_cols=213  Identities=13%  Similarity=0.008  Sum_probs=159.7

Q ss_pred             CHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhh
Q psy17691          1 LIDLAIDTYRRAIELQ----PNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIR   76 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~----P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~   76 (673)
                      ++++|+..|+++++..    |+++.++..+|.++...|+++.+..++..+.                             
T Consensus        20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-----------------------------   70 (275)
T 1xnf_A           20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-----------------------------   70 (275)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------------
T ss_pred             hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-----------------------------
Confidence            3789999999999984    4567788888888888776444443333222                             


Q ss_pred             hhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691         77 IGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNN  155 (673)
Q Consensus        77 l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  155 (673)
                                                        ..+|++..++..+ ..+...|++++|+.+|+++++.+|++..++..
T Consensus        71 ----------------------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  116 (275)
T 1xnf_A           71 ----------------------------------AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN  116 (275)
T ss_dssp             ----------------------------------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             ----------------------------------HcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHH
Confidence                                              2345555666444 44556888999999999999988888888889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy17691        156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ  235 (673)
Q Consensus       156 Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  235 (673)
                      +|.++...|++++|+.+|+++++++|++......++.. ...|++++|+..+++++...|++...+. ++.++...++.+
T Consensus       117 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  194 (275)
T 1xnf_A          117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQ  194 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHH
Confidence            99999999999999999999998888887666655544 5668888898888888888887765544 666777777888


Q ss_pred             HHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCCc---------cccCCCCHH
Q psy17691        236 GALQCYSRAIQINPGF----ADAHSNLASIHKDSGKRG---------FFIRTDLNS  278 (673)
Q Consensus       236 eA~~~~~~Al~l~p~~----~~a~~~La~~~~~~g~~~---------l~l~p~~~~  278 (673)
                      +|+..++++++..|..    ..++.++|.++...|+++         +.++|++..
T Consensus       195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence            8888888887766533    677888888888888876         566776544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.72  E-value=2.3e-16  Score=157.75  Aligned_cols=175  Identities=17%  Similarity=0.150  Sum_probs=160.4

Q ss_pred             cCCCC-hhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy17691        112 LSPDD-GTTFS-YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN  189 (673)
Q Consensus       112 l~p~~-~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  189 (673)
                      .+|+. ...+. .+..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|++.++++++.+|.+..++.+
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  110 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN  110 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence            34444 44554 44556679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        190 LASVLQQQGKLTDALLHYKEAIR--IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK  267 (673)
Q Consensus       190 la~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~  267 (673)
                      +|.++...|++++|+++|+++++  ..|.+..++..+|.++...|++++|+.+|+++++.+|++..++..++.++...|+
T Consensus       111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  190 (252)
T 2ho1_A          111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE  190 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999  8898999999999999999999999999999999999999999999999999999


Q ss_pred             Cc---------cccCCCCHHHHHHHHHH
Q psy17691        268 RG---------FFIRTDLNSAYFWLLLL  286 (673)
Q Consensus       268 ~~---------l~l~p~~~~a~~~l~~~  286 (673)
                      ++         +...|++..++..++..
T Consensus       191 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~  218 (252)
T 2ho1_A          191 YVPARQYYDLFAQGGGQNARSLLLGIRL  218 (252)
T ss_dssp             HHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            87         67889998888777644

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.72  E-value=1.4e-15  Score=154.53  Aligned_cols=145  Identities=19%  Similarity=0.217  Sum_probs=118.2

Q ss_pred             hhHHH-HHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHH
Q psy17691        117 GTTFS-YIISVLL----LIQVSEAEECYNTALRLCPTHADSLNNLANIKRE----QGYIEEATRLYLKALEVFPEFAAAH  187 (673)
Q Consensus       117 ~~~~~-~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~  187 (673)
                      ..++. .+..+..    .+++++|+.+|+++++.  +++.+++++|.+|..    .+++++|+.+|+++++..  +..++
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~  149 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGC  149 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHH
Confidence            34443 3344556    78888999999888887  478888888988888    888999999999888875  67888


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        188 SNLASVLQQ----QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE----MQDIQGALQCYSRAIQINPGFADAHSNLA  259 (673)
Q Consensus       188 ~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~l~p~~~~a~~~La  259 (673)
                      +++|.++..    .+++++|+.+|+++++.  +++.++.++|.+|..    .+++++|+.+|+++++..+  ..++.+||
T Consensus       150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~  225 (273)
T 1ouv_A          150 TILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLG  225 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHH
Confidence            888888888    88889999999888887  457888888988888    8889999999988888865  78888888


Q ss_pred             HHHHH----cCCCc
Q psy17691        260 SIHKD----SGKRG  269 (673)
Q Consensus       260 ~~~~~----~g~~~  269 (673)
                      .+|..    .++++
T Consensus       226 ~~~~~g~~~~~~~~  239 (273)
T 1ouv_A          226 AMQYNGEGVTRNEK  239 (273)
T ss_dssp             HHHHTTSSSSCCST
T ss_pred             HHHHcCCCcccCHH
Confidence            88887    67765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.72  E-value=1.6e-17  Score=154.30  Aligned_cols=121  Identities=15%  Similarity=0.051  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAI  211 (673)
Q Consensus       132 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  211 (673)
                      +-.+-..++++++++|++..+++.+|.++.++|++++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|++++
T Consensus        18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            33344568888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        212 RIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       212 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~  252 (673)
                      +++|+++.+|+++|.+|..+|++++|+.+|++++++.|+..
T Consensus        98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999999865

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.72  E-value=2.7e-15  Score=152.45  Aligned_cols=143  Identities=13%  Similarity=0.186  Sum_probs=84.8

Q ss_pred             hhHHHHHHHhcCCCChhHHHHHHHH-HH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q psy17691        102 KSRVEIFCYALSPDDGTTFSYIISV-LL----LIQVSEAEECYNTALRLCPTHADSLNNLANIKRE----QGYIEEATRL  172 (673)
Q Consensus       102 ~~a~~~~~~~l~p~~~~~~~~~~~~-~~----~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~----~g~~~eA~~~  172 (673)
                      .+++..+...+..++..++..++.. ..    .+++++|+.+|+++++.+  +..++.++|.+|..    .+++++|+.+
T Consensus        95 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~  172 (273)
T 1ouv_A           95 NKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALAS  172 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            3344444444434455555444333 33    566666666666666653  45566666666666    6666666666


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q psy17691        173 YLKALEVFPEFAAAHSNLASVLQQ----QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE----MQDIQGALQCYSRA  244 (673)
Q Consensus       173 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~A  244 (673)
                      |+++++.  ++..+++++|.+|..    .+++++|+.+|+++++.++  +.++.++|.+|..    .+++++|+.+|+++
T Consensus       173 ~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a  248 (273)
T 1ouv_A          173 YDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKG  248 (273)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred             HHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence            6666655  345666666666666    6666666666666666544  5566666666666    66666666666666


Q ss_pred             HHhCCC
Q psy17691        245 IQINPG  250 (673)
Q Consensus       245 l~l~p~  250 (673)
                      +++.|+
T Consensus       249 ~~~~~~  254 (273)
T 1ouv_A          249 CKLGAK  254 (273)
T ss_dssp             HHHTCH
T ss_pred             HHcCCH
Confidence            666554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.71  E-value=2.6e-16  Score=148.32  Aligned_cols=149  Identities=16%  Similarity=0.127  Sum_probs=143.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      ..+..+...|++++|+..++++++.+|++..++..+|.++...|++++|+.+++++++.+|.+..++.++|.++...|++
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   92 (186)
T 3as5_A           13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY   92 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Confidence            34456667999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ++|++.++++++.+|++..++..+|.++...|++++|+.+|+++++..|++..++..+|.++...|+++
T Consensus        93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  161 (186)
T 3as5_A           93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE  161 (186)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.71  E-value=2.4e-16  Score=159.48  Aligned_cols=169  Identities=14%  Similarity=0.045  Sum_probs=149.3

Q ss_pred             cCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---H
Q psy17691        112 LSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---A  184 (673)
Q Consensus       112 l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~  184 (673)
                      ..+++...+ ..+..++..|++++|+..|+++++.+|++   ..+++.+|.++..+|++++|+..|+++++.+|++   .
T Consensus        10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            456666665 55566778999999999999999999999   9999999999999999999999999999998865   6


Q ss_pred             HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHH
Q psy17691        185 AAHSNLASVLQQ--------QGKLTDALLHYKEAIRIQPSFADAY-----------------SNMGNTLKEMQDIQGALQ  239 (673)
Q Consensus       185 ~~~~~la~~~~~--------~g~~~eA~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~eA~~  239 (673)
                      .+++.+|.++..        +|++++|+..|+++++..|++..+.                 +++|.+|..+|++++|+.
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  169 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV  169 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            789999999999        9999999999999999999986655                 889999999999999999


Q ss_pred             HHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCCc---------cccCCCCHHHH
Q psy17691        240 CYSRAIQINPG---FADAHSNLASIHKDS----------GKRG---------FFIRTDLNSAY  280 (673)
Q Consensus       240 ~~~~Al~l~p~---~~~a~~~La~~~~~~----------g~~~---------l~l~p~~~~a~  280 (673)
                      .|+++++..|+   ...+++.+|.++..+          |+++         ++..|+++.+.
T Consensus       170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  232 (261)
T 3qky_A          170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR  232 (261)
T ss_dssp             HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence            99999999998   567999999999988          4444         56778876543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.70  E-value=2.6e-16  Score=141.31  Aligned_cols=117  Identities=18%  Similarity=0.132  Sum_probs=110.7

Q ss_pred             cCCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17691        112 LSPDDGTTFS-YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL  190 (673)
Q Consensus       112 l~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  190 (673)
                      ++|+....+. .+..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++..+|+++
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            6788777774 556677899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL  228 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  228 (673)
                      |.++..+|++++|++.|+++++++|++.+++.+++.++
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999875

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.70  E-value=4.9e-17  Score=175.04  Aligned_cols=251  Identities=19%  Similarity=0.195  Sum_probs=183.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFP----DAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIR   76 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~----~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~   76 (673)
                      ++++|+..|+++++++|++.    .++..+|.+|...|+++.+..++..+..+.........           .......
T Consensus        63 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~  131 (411)
T 4a1s_A           63 DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG-----------EAKSSGN  131 (411)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH-----------HHHHHHH
Confidence            57899999999999999987    58999999999999876666666655544322110000           0001133


Q ss_pred             hhhhhhhcCCCcccccccccCCCCchhHHHHHHHh-cCCCChhHHHH-HHHHHHcCC-----------------HHHHHH
Q psy17691         77 IGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA-LSPDDGTTFSY-IISVLLLIQ-----------------VSEAEE  137 (673)
Q Consensus        77 l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~-l~p~~~~~~~~-~~~~~~~g~-----------------~~~A~~  137 (673)
                      ++.++...++...+...       ...++...... ..+....++.. +..+...|+                 +++|+.
T Consensus       132 l~~~~~~~g~~~~A~~~-------~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          132 LGNTLKVMGRFDEAAIC-------CERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHTTCHHHHHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHH-------HHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            44555555443322111       11111111111 01223334444 445556889                 999999


Q ss_pred             HHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHH
Q psy17691        138 CYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA------AAHSNLASVLQQQGKLTDALL  205 (673)
Q Consensus       138 ~~~~al~~~------p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~eA~~  205 (673)
                      ++++++++.      +....++.++|.++..+|++++|+.++++++++.+...      .++.++|.++..+|++++|+.
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE  284 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            999999874      33456899999999999999999999999999876543      389999999999999999999


Q ss_pred             HHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCc
Q psy17691        206 HYKEAIRIQPSF------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF------ADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       206 ~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~La~~~~~~g~~~  269 (673)
                      +|++++++.+..      ..++.++|.++..+|++++|+.+|++++++.+..      ..++.++|.++...|+++
T Consensus       285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  360 (411)
T 4a1s_A          285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE  360 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence            999999987754      6789999999999999999999999999885432      458899999999999875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.69  E-value=2.5e-16  Score=154.21  Aligned_cols=158  Identities=13%  Similarity=0.061  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17691        119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNN----------------LANIKREQGYIEEATRLYLKALEVFPE  182 (673)
Q Consensus       119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~----------------Lg~~~~~~g~~~eA~~~~~~al~~~p~  182 (673)
                      .+..+..++..|++++|+.+|+++++.+|+++.+++.                +|.+|..+|++++|+..|+++++++|+
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   86 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN   86 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence            3456677788999999999999999999999999999                999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD--IQGALQCYSRAIQINPGFADAHSNLAS  260 (673)
Q Consensus       183 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~eA~~~~~~Al~l~p~~~~a~~~La~  260 (673)
                      +..+++++|.++...|++++|+..|+++++++|+++.+++++|.+|..+|+  ..++...|++++...|. ..+++++|.
T Consensus        87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~  165 (208)
T 3urz_A           87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGL  165 (208)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987764  45677888887643332 347888999


Q ss_pred             HHHHcCCCc---------cccCCCCH
Q psy17691        261 IHKDSGKRG---------FFIRTDLN  277 (673)
Q Consensus       261 ~~~~~g~~~---------l~l~p~~~  277 (673)
                      ++...|+++         ++++|+..
T Consensus       166 ~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          166 SKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCHH
Confidence            999999987         78889754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.69  E-value=1.5e-16  Score=164.32  Aligned_cols=248  Identities=18%  Similarity=0.166  Sum_probs=173.1

Q ss_pred             CHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc-CChhhhcCChhhHHhhcCCCchh
Q psy17691          1 LIDLAIDTYRRAIELQPNF----PDAYCNLANALKEKGQPNFPDAYCNLANALKEK-GQINVLHKPPYKYTRELAPGNRI   75 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~----~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~-g~~~~A~~~~~~~~~~l~p~~~~   75 (673)
                      ++++|+..|+++++.+|++    ..++..+|.++...|+++.+..++..+..+... ++....            .....
T Consensus        20 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------------~~~~~   87 (338)
T 3ro2_A           20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE------------AKASG   87 (338)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH------------HHHHH
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH------------HHHHH
Confidence            5789999999999999999    478889999999999866665555554433221 110000            00012


Q ss_pred             hhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCC---hhHHH-HHHHHHHcCC--------------------
Q psy17691         76 RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDD---GTTFS-YIISVLLLIQ--------------------  131 (673)
Q Consensus        76 ~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~---~~~~~-~~~~~~~~g~--------------------  131 (673)
                      .++.++...++...+...       ...++.... . ..+.   ..++. .+..+...|+                    
T Consensus        88 ~l~~~~~~~g~~~~A~~~-------~~~al~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  158 (338)
T 3ro2_A           88 NLGNTLKVLGNFDEAIVC-------CQRHLDISR-E-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA  158 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHH-------HHHHHHHHH-H-TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHH-------HHHHHHHHH-H-hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence            334444444432222110       000111000 0 1111   22333 3344556788                    


Q ss_pred             HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC
Q psy17691        132 VSEAEECYNTALRL------CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGK  199 (673)
Q Consensus       132 ~~~A~~~~~~al~~------~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~  199 (673)
                      +++|+.++++++++      .+....++..+|.++...|++++|+.++++++++.+..      ..++.++|.++...|+
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  238 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  238 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence            99999999998886      23345688999999999999999999999999886543      3488999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q psy17691        200 LTDALLHYKEAIRIQPSF------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF------ADAHSNLASIHKDSGK  267 (673)
Q Consensus       200 ~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~La~~~~~~g~  267 (673)
                      +++|+..+++++++.+..      ..++..+|.++..+|++++|+.+|++++++.+..      ..++..+|.++...|+
T Consensus       239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  318 (338)
T 3ro2_A          239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN  318 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            999999999999886655      6788999999999999999999999999875432      4578889999999998


Q ss_pred             Cc
Q psy17691        268 RG  269 (673)
Q Consensus       268 ~~  269 (673)
                      ++
T Consensus       319 ~~  320 (338)
T 3ro2_A          319 HD  320 (338)
T ss_dssp             HH
T ss_pred             hH
Confidence            75

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.68  E-value=1.7e-14  Score=160.11  Aligned_cols=245  Identities=17%  Similarity=0.124  Sum_probs=134.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC-------------CCcHHHHHHHHHHHHH----cCChhhhc
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKE----KGQ-------------PNFPDAYCNLANALKE----KGQINVLH   59 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~----~g~-------------~~~a~a~~~la~~l~~----~g~~~~A~   59 (673)
                      ++++|+..|+++++.  +++.+++.||.+|..    .++             ...+.+++.+|.++..    .+++++|.
T Consensus        58 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~  135 (490)
T 2xm6_A           58 DLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV  135 (490)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            367788888888775  677888888888887    665             4566677777887777    67777776


Q ss_pred             CChhhHHhhcC-CCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHH-H----cCCHH
Q psy17691         60 KPPYKYTRELA-PGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVL-L----LIQVS  133 (673)
Q Consensus        60 ~~~~~~~~~l~-p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~-~----~g~~~  133 (673)
                      . .++.+.... +.....++.++..-...          .....+++..+.......+..++..++..+ .    .++++
T Consensus       136 ~-~~~~a~~~~~~~a~~~Lg~~y~~g~g~----------~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~  204 (490)
T 2xm6_A          136 K-WFRLAAEQGRDSGQQSMGDAYFEGDGV----------TRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDA  204 (490)
T ss_dssp             H-HHHHHHHTTCHHHHHHHHHHHHHTSSS----------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             H-HHHHHHHCCCHHHHHHHHHHHHcCCCC----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHH
Confidence            5 333333322 22234556555431100          011233444443333334444443333322 2    45555


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q psy17691        134 EAEECYNTALRLCPTHADSLNNLANIKRE----QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ----QGKLTDALL  205 (673)
Q Consensus       134 ~A~~~~~~al~~~p~~~~a~~~Lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~  205 (673)
                      +|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++.  .+..+++++|.++..    .+++++|+.
T Consensus       205 ~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~  280 (490)
T 2xm6_A          205 ISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALE  280 (490)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence            555555555543  345555555555554    55555555555555543  345555555555555    555555555


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        206 HYKEAIRIQPSFADAYSNMGNTLKEM-----QDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG  266 (673)
Q Consensus       206 ~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g  266 (673)
                      +|+++.+.  .++.+++++|.+|...     +++++|+.+|+++++.  ++..++++||.+|...|
T Consensus       281 ~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g  342 (490)
T 2xm6_A          281 WYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLG  342 (490)
T ss_dssp             HHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCC
Confidence            55555443  3455555555555555     5555555555555543  34455555555555543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.67  E-value=1.9e-16  Score=146.54  Aligned_cols=123  Identities=11%  Similarity=0.014  Sum_probs=116.1

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        136 EECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP  215 (673)
Q Consensus       136 ~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p  215 (673)
                      -..|+++++++|++..+++.+|.++...|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691        216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL  258 (673)
Q Consensus       216 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~L  258 (673)
                      +++.+++++|.+|..+|++++|+.+|+++++++|+++......
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  129 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS  129 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence            9999999999999999999999999999999999876554333

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.67  E-value=5.1e-16  Score=160.34  Aligned_cols=145  Identities=16%  Similarity=0.100  Sum_probs=118.5

Q ss_pred             hHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------
Q psy17691        118 TTFSYI-ISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQ-GYIEEATRLYLKALEVFPEF------  183 (673)
Q Consensus       118 ~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~-g~~~eA~~~~~~al~~~p~~------  183 (673)
                      .++..+ ..+..+|++++|+.+|++++++.+..      ..++.++|.+|..+ |++++|+.+|++++++.|..      
T Consensus        78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~  157 (292)
T 1qqe_A           78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS  157 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence            345444 44556899999999999999997654      56899999999996 99999999999999998764      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--
Q psy17691        184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD-------AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA--  254 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a--  254 (673)
                      ..++.++|.++..+|++++|+.+|++++++.|++..       ++.++|.++..+|++++|+.+|+++++++|++...  
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  237 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE  237 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence            567999999999999999999999999999987643       68999999999999999999999999999987654  


Q ss_pred             ---HHHHHHHH
Q psy17691        255 ---HSNLASIH  262 (673)
Q Consensus       255 ---~~~La~~~  262 (673)
                         +..++..+
T Consensus       238 ~~~l~~l~~~~  248 (292)
T 1qqe_A          238 SNFLKSLIDAV  248 (292)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence               34455554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.67  E-value=1.2e-15  Score=154.04  Aligned_cols=201  Identities=13%  Similarity=0.059  Sum_probs=163.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      ++++|+..|+++++.+|+++.++..+|.++...|+++.+..++..+..                                
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------------------------------  105 (275)
T 1xnf_A           58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--------------------------------  105 (275)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------------
T ss_pred             cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh--------------------------------
Confidence            578999999999999999999999999999999865555444433322                                


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANI  159 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~  159 (673)
                                                     ..|++..++.. +..+...|++++|+.+|+++++.+|++......++..
T Consensus       106 -------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          106 -------------------------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             -------------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             -------------------------------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence                                           34555555544 4556679999999999999999999998777666644


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHH
Q psy17691        160 KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS----FADAYSNMGNTLKEMQDIQ  235 (673)
Q Consensus       160 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~  235 (673)
                       ...|++++|+..+++++...|.+...+. ++.++...++.++|+..++++++..|.    +..++..+|.++..+|+++
T Consensus       155 -~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  232 (275)
T 1xnf_A          155 -EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD  232 (275)
T ss_dssp             -HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             -HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence             6679999999999999999998866654 777888889999999999999887764    3789999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        236 GALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       236 eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +|+.+|+++++++|++...+   +.++..+|+++
T Consensus       233 ~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~  263 (275)
T 1xnf_A          233 SATALFKLAVANNVHNFVEH---RYALLELSLLG  263 (275)
T ss_dssp             HHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchhHHHH---HHHHHHHHHHH
Confidence            99999999999999775543   44555555543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.66  E-value=5.3e-16  Score=175.53  Aligned_cols=156  Identities=16%  Similarity=0.137  Sum_probs=129.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK  208 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  208 (673)
                      .|++++|+..|+++++.+|++..++..+|.++..+|++++|++.|+++++++|++..++.++|.++..+|++++|+++|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCCc---------cccCCCC
Q psy17691        209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS---GKRG---------FFIRTDL  276 (673)
Q Consensus       209 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~---g~~~---------l~l~p~~  276 (673)
                      ++++++|++..++.++|.+|..+|++++|+++|+++++++|++..++.+++.++...   |+++         ++.+|++
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999999999999999   7765         5677776


Q ss_pred             HHHHHHHH
Q psy17691        277 NSAYFWLL  284 (673)
Q Consensus       277 ~~a~~~l~  284 (673)
                      ...+..++
T Consensus       162 ~~~~~~l~  169 (568)
T 2vsy_A          162 VEPFAFLS  169 (568)
T ss_dssp             SCHHHHTT
T ss_pred             cChHHHhC
Confidence            66655544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.66  E-value=4.3e-15  Score=154.52  Aligned_cols=216  Identities=12%  Similarity=0.046  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          2 IDLAIDTYRRAIE-LQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         2 ~~eAi~~~~kAL~-l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      +++|+..|++|++ ++|++..+|..+|.++...|+.+.+...+..+                                  
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a----------------------------------  125 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL----------------------------------  125 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------------------------
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------------------------
Confidence            4899999999999 79999999999999999888644443333222                                  


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChh-HHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGT-TFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLAN  158 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~-~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~  158 (673)
                                                   +.+.|++.. +|.. +..+...|++++|+..|+++++..|.+..++...+.
T Consensus       126 -----------------------------l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  176 (308)
T 2ond_A          126 -----------------------------LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL  176 (308)
T ss_dssp             -----------------------------HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred             -----------------------------HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence                                         123455544 5544 444556899999999999999999999888887777


Q ss_pred             HHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHcCC
Q psy17691        159 IKRE-QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI---QP-SFADAYSNMGNTLKEMQD  233 (673)
Q Consensus       159 ~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p-~~~~~~~~lg~~~~~~g~  233 (673)
                      +... .|++++|..+|+++++.+|++..+|.+++.++..+|++++|+..|+++++.   .| +...+|..++..+...|+
T Consensus       177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~  256 (308)
T 2ond_A          177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD  256 (308)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence            6544 799999999999999999999999999999999999999999999999996   55 478899999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-cccCCCCHHHHHHHH
Q psy17691        234 IQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG-FFIRTDLNSAYFWLL  284 (673)
Q Consensus       234 ~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~-l~l~p~~~~a~~~l~  284 (673)
                      +++|...++++++..|++.+... ++.+   ..++. +.++|+++.++..+|
T Consensus       257 ~~~a~~~~~~a~~~~p~~~~~~~-~~~~---~~r~~~l~~~P~~~~~ln~lg  304 (308)
T 2ond_A          257 LASILKVEKRRFTAFREEYEGKE-TALL---VDRYKFMDLYPCSASELKALG  304 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTSSCH-HHHH---HTTTCBTTBCSSCHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHcccccccch-HHHH---HHHHHhcccCCCCHHHHHhcC
Confidence            99999999999999998654321 1222   34445 889999999887665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.66  E-value=1.7e-15  Score=156.13  Aligned_cols=168  Identities=11%  Similarity=0.040  Sum_probs=151.7

Q ss_pred             hhHHHHHHHhcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17691        102 KSRVEIFCYALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF  180 (673)
Q Consensus       102 ~~a~~~~~~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~  180 (673)
                      ...+........|++...+ ..+..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++++.+
T Consensus       102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            3444444444457776666 445566789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q psy17691        181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF--ADAHSNL  258 (673)
Q Consensus       181 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~--~~a~~~L  258 (673)
                      |+....+...+..+...++.++|++.|+++++.+|++..+++++|.++...|++++|+..|+++++.+|++  ..++.+|
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence            98887888888889999999999999999999999999999999999999999999999999999999998  8899999


Q ss_pred             HHHHHHcCCCc
Q psy17691        259 ASIHKDSGKRG  269 (673)
Q Consensus       259 a~~~~~~g~~~  269 (673)
                      +.++...|+.+
T Consensus       262 ~~~~~~~g~~~  272 (287)
T 3qou_A          262 QEILAALGTGD  272 (287)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHHcCCCC
Confidence            99999999865

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.66  E-value=3.6e-14  Score=157.37  Aligned_cols=262  Identities=14%  Similarity=0.079  Sum_probs=172.1

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC-------------CCcHHHHHHHHHHHHH----cCChhhhcCChhh
Q psy17691          6 IDTYRRAIELQPNFPDAYCNLANALKE----KGQ-------------PNFPDAYCNLANALKE----KGQINVLHKPPYK   64 (673)
Q Consensus         6 i~~~~kAL~l~P~~~~a~~~Lg~~~~~----~g~-------------~~~a~a~~~la~~l~~----~g~~~~A~~~~~~   64 (673)
                      +..++++.+  ++++++++.+|.+|..    .++             ..++.+++.+|..+..    .+++++|.. .++
T Consensus        27 ~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~-~~~  103 (490)
T 2xm6_A           27 LEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVI-WYK  103 (490)
T ss_dssp             HHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH-HHH
T ss_pred             HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH-HHH
Confidence            445555443  5677888888887777    554             3556677777777777    777777765 333


Q ss_pred             HHhhcC-CCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHH-H----cCCHHHHHHH
Q psy17691         65 YTRELA-PGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVL-L----LIQVSEAEEC  138 (673)
Q Consensus        65 ~~~~l~-p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~-~----~g~~~~A~~~  138 (673)
                      ++.... +.....++.++..-...          .....+++..+....+.++..++..++.++ .    .+++++|+.+
T Consensus       104 ~a~~~~~~~a~~~Lg~~y~~g~g~----------~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  173 (490)
T 2xm6_A          104 KAALKGLPQAQQNLGVMYHEGNGV----------KVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREW  173 (490)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSSS----------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHcCCCC----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            333322 22234556665541100          012344555555555566666665554443 3    6678888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q psy17691        139 YNTALRLCPTHADSLNNLANIKRE----QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ----QGKLTDALLHYKEA  210 (673)
Q Consensus       139 ~~~al~~~p~~~~a~~~Lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~a  210 (673)
                      |+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  +++.+++++|.+|..    .+++++|+.+|+++
T Consensus       174 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a  249 (490)
T 2xm6_A          174 YSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQS  249 (490)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            8887775  567788888888877    77888888888887764  467777888888776    77788888888887


Q ss_pred             HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCCc-------cccCC
Q psy17691        211 IRIQPSFADAYSNMGNTLKE----MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS-----GKRG-------FFIRT  274 (673)
Q Consensus       211 l~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~-----g~~~-------l~l~p  274 (673)
                      ++.  .++.+++++|.+|..    .+++++|+.+|+++.+.  +++.++++||.+|...     ++++       .....
T Consensus       250 ~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~  325 (490)
T 2xm6_A          250 AEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ  325 (490)
T ss_dssp             HTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred             HHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence            765  456777888888877    77888888888887654  5677778888877776     4444       22344


Q ss_pred             CCHHHHHHHHHHhh
Q psy17691        275 DLNSAYFWLLLLDA  288 (673)
Q Consensus       275 ~~~~a~~~l~~~~~  288 (673)
                      +++.++++++....
T Consensus       326 ~~~~a~~~lg~~y~  339 (490)
T 2xm6_A          326 GDATAQANLGAIYF  339 (490)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            66677777775543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.65  E-value=1.6e-14  Score=149.71  Aligned_cols=206  Identities=11%  Similarity=-0.005  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhh
Q psy17691          3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSS   82 (673)
Q Consensus         3 ~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~   82 (673)
                      ++|+.++.++|.++|++..+|...+.++..+|.                 .++++++.                      
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~-----------------~~~~eeL~----------------------   90 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPN-----------------RNLYDELD----------------------   90 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT-----------------SCHHHHHH----------------------
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc-----------------ccHHHHHH----------------------
Confidence            578888888888999888888888888887772                 11111110                      


Q ss_pred             hcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHH-----Hc---CCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691         83 DFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVL-----LL---IQVSEAEECYNTALRLCPTHADSLN  154 (673)
Q Consensus        83 ~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~-----~~---g~~~~A~~~~~~al~~~p~~~~a~~  154 (673)
                                            .-...+..+|++..+|...+.++     ..   +++++++.+++++++.+|++..+|.
T Consensus        91 ----------------------~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~  148 (306)
T 3dra_A           91 ----------------------WCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWS  148 (306)
T ss_dssp             ----------------------HHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ----------------------HHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence                                  00112334566666664443333     23   5666777777777777777777777


Q ss_pred             HHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        155 NLANIKREQGYIE--EATRLYLKALEVFPEFAAAHSNLASVLQQQGK------LTDALLHYKEAIRIQPSFADAYSNMGN  226 (673)
Q Consensus       155 ~Lg~~~~~~g~~~--eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~lg~  226 (673)
                      ..+.++...|+++  +++++++++++.+|.+..+|++.+.++...++      ++++++++++++..+|++..+|+.++.
T Consensus       149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~  228 (306)
T 3dra_A          149 YRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLG  228 (306)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHH
Confidence            7777777666666  67777777777777777777777776666665      667777777777777777777777777


Q ss_pred             HHHHcCCHHH-HHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCCc
Q psy17691        227 TLKEMQDIQG-ALQCYSRAIQIN---PGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       227 ~~~~~g~~~e-A~~~~~~Al~l~---p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ++.+.|+..+ ...+++++++++   |.+..++..|+.++.+.|+.+
T Consensus       229 ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~  275 (306)
T 3dra_A          229 IHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN  275 (306)
T ss_dssp             HHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence            7766666443 334555555554   666667777777766666655

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.65  E-value=1.1e-15  Score=145.18  Aligned_cols=150  Identities=14%  Similarity=0.093  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-Hc
Q psy17691        119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ-QQ  197 (673)
Q Consensus       119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~-~~  197 (673)
                      .+..+..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+| ++..+..++.+.. ..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence            345566778899999999999999999999999999999999999999999999999999999 8877776665533 33


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCCc
Q psy17691        198 GKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF--ADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       198 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~--~~a~~~La~~~~~~g~~~  269 (673)
                      ++..+|+..++++++.+|+++.+++++|.++..+|++++|+..|+++++.+|+.  ..++.+++.++...|+.+
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  161 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN  161 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence            344568999999999999999999999999999999999999999999999976  569999999999999875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.64  E-value=6.9e-15  Score=145.60  Aligned_cols=132  Identities=16%  Similarity=0.131  Sum_probs=117.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHhh
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHAD---SLNNLANIKRE------------------QGYIEEATRLYLKALEV  179 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~Lg~~~~~------------------~g~~~eA~~~~~~al~~  179 (673)
                      ..+..++..|++++|+..|+++++.+|++..   +++.+|.++..                  +|++++|+..|+++++.
T Consensus        46 ~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  125 (225)
T 2yhc_A           46 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG  125 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence            4456667789999999999999999999864   88999999886                  57999999999999999


Q ss_pred             CCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHH
Q psy17691        180 FPEFAAAH-----------------SNLASVLQQQGKLTDALLHYKEAIRIQPSFA---DAYSNMGNTLKEMQDIQGALQ  239 (673)
Q Consensus       180 ~p~~~~~~-----------------~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~  239 (673)
                      +|++..++                 ..+|.+|...|++++|+..|+++++..|+++   +++..+|.++.++|++++|++
T Consensus       126 ~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~  205 (225)
T 2yhc_A          126 YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK  205 (225)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence            99986544                 6789999999999999999999999999986   689999999999999999999


Q ss_pred             HHHHHHHhCCCCH
Q psy17691        240 CYSRAIQINPGFA  252 (673)
Q Consensus       240 ~~~~Al~l~p~~~  252 (673)
                      .++++....|++.
T Consensus       206 ~~~~l~~~~~~~~  218 (225)
T 2yhc_A          206 VAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHCCSCCC
T ss_pred             HHHHHHhhCCCch
Confidence            9999998888753

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.64  E-value=8.4e-16  Score=140.61  Aligned_cols=125  Identities=14%  Similarity=0.066  Sum_probs=113.9

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        137 ECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS  216 (673)
Q Consensus       137 ~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  216 (673)
                      ..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..+|+++|.++...|++++|+..|+++++++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       217 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      ++.+++++|.+|..+|++++|+.+|+++++++|+++........+
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            999999999999999999999999999999999887655544444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.63  E-value=1.9e-15  Score=156.10  Aligned_cols=144  Identities=12%  Similarity=0.079  Sum_probs=116.2

Q ss_pred             HHHHHHH-HHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-----
Q psy17691        119 TFSYIIS-VLLL-IQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA-----  185 (673)
Q Consensus       119 ~~~~~~~-~~~~-g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-----  185 (673)
                      ++..++. +... |++++|+.+|++++++.|..      ..++.++|.++..+|++++|+.+|++++++.|++..     
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  198 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence            3444444 4454 99999999999999998754      568999999999999999999999999999987643     


Q ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        186 --AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD-----AYSNMGNTLK--EMQDIQGALQCYSRAIQINPGFADAHS  256 (673)
Q Consensus       186 --~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-----~~~~lg~~~~--~~g~~~eA~~~~~~Al~l~p~~~~a~~  256 (673)
                        ++.++|.++..+|++++|+.+|+++++++|+...     .+..++..+.  ..+++++|+..|++++.++|.+...+.
T Consensus       199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~  278 (292)
T 1qqe_A          199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN  278 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence              6899999999999999999999999999998765     3455666665  467899999999999999998877777


Q ss_pred             HHHHHH
Q psy17691        257 NLASIH  262 (673)
Q Consensus       257 ~La~~~  262 (673)
                      .+-...
T Consensus       279 ~~k~~~  284 (292)
T 1qqe_A          279 KIKESI  284 (292)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            665554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=5.8e-15  Score=131.55  Aligned_cols=119  Identities=17%  Similarity=0.173  Sum_probs=110.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN  226 (673)
Q Consensus       147 p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~  226 (673)
                      |..+..+..+|..+...|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|++..++.++|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHc
Q psy17691        227 TLKEMQDIQGALQCYSRAIQIN------PGFADAHSNLASIHKDS  265 (673)
Q Consensus       227 ~~~~~g~~~eA~~~~~~Al~l~------p~~~~a~~~La~~~~~~  265 (673)
                      ++..+|++++|+.+|+++++++      |++..++..+..+....
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999      99999999988877553

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.63  E-value=1.8e-15  Score=155.29  Aligned_cols=195  Identities=27%  Similarity=0.310  Sum_probs=151.4

Q ss_pred             CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCC
Q psy17691          1 LIDLAIDTYRRAIEL--------QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPG   72 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l--------~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~   72 (673)
                      ++++|+..|++++++        +|....++..+|.++...|+++.+..++..+.......               ..  
T Consensus        42 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~--  104 (311)
T 3nf1_A           42 RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT---------------LG--  104 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------------HC--
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---------------hC--
Confidence            478999999999995        67778888889999988887766666665554432110               00  


Q ss_pred             chhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-----
Q psy17691         73 NRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFS-YIISVLLLIQVSEAEECYNTALRLC-----  146 (673)
Q Consensus        73 ~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~-----  146 (673)
                                                            ...+....++. .+..+...|++++|+.+|++++++.     
T Consensus       105 --------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  146 (311)
T 3nf1_A          105 --------------------------------------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  146 (311)
T ss_dssp             --------------------------------------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             --------------------------------------CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence                                                  00112233343 3345556899999999999999884     


Q ss_pred             ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q psy17691        147 ---PTHADSLNNLANIKREQGYIEEATRLYLKALEV--------FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI--  213 (673)
Q Consensus       147 ---p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--  213 (673)
                         |....++..+|.++...|++++|+.+++++++.        .|....++.++|.++...|++++|+++|+++++.  
T Consensus       147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  226 (311)
T 3nf1_A          147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH  226 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence               555778999999999999999999999999988        6666788999999999999999999999999974  


Q ss_pred             -----------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        214 -----------------------------------------------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       214 -----------------------------------------------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  246 (673)
                                                                     +|....++.++|.+|..+|++++|+.+|+++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          227 EREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             HHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                                                           355567888899999999999999999999988


Q ss_pred             hCCC
Q psy17691        247 INPG  250 (673)
Q Consensus       247 l~p~  250 (673)
                      +.|+
T Consensus       307 l~~~  310 (311)
T 3nf1_A          307 SRKQ  310 (311)
T ss_dssp             HHC-
T ss_pred             Hhhc
Confidence            8764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.63  E-value=1.1e-15  Score=145.15  Aligned_cols=133  Identities=14%  Similarity=0.068  Sum_probs=111.7

Q ss_pred             CCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17691        113 SPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKR-EQGYIEEATRLYLKALEVFPEFAAAHSNL  190 (673)
Q Consensus       113 ~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~l  190 (673)
                      +|++..++..+ ..+...|++++|+..|+++++.+| ++..+..++.+.. ..++..+|+..++++++.+|++..+++++
T Consensus        36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l  114 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL  114 (176)
T ss_dssp             HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH
Confidence            45666665444 344557799999999999999999 8877776665533 33444568999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRIQPSF--ADAYSNMGNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  246 (673)
                      |.++...|++++|+..|+++++.+|+.  ..++.++|.++..+|+.++|+..|++++.
T Consensus       115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999999999999999999999875  56999999999999999999999999875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.63  E-value=6.6e-15  Score=145.72  Aligned_cols=150  Identities=9%  Similarity=-0.028  Sum_probs=136.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA---AAHSNLASV  193 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~  193 (673)
                      +..+..++..|++++|+..|+++++.+|++   ..+++.+|.+|..+|++++|+..|+++++.+|++.   .+++.+|.+
T Consensus         8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~   87 (225)
T 2yhc_A            8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT   87 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence            455667788999999999999999999986   47999999999999999999999999999999985   489999999


Q ss_pred             HHH------------------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHH
Q psy17691        194 LQQ------------------QGKLTDALLHYKEAIRIQPSFADAY-----------------SNMGNTLKEMQDIQGAL  238 (673)
Q Consensus       194 ~~~------------------~g~~~eA~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~eA~  238 (673)
                      +..                  .|++++|+..|+++++..|++..++                 ..+|.+|.++|++++|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~  167 (225)
T 2yhc_A           88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVV  167 (225)
T ss_dssp             HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            886                  5789999999999999999987544                 67899999999999999


Q ss_pred             HHHHHHHHhCCCCH---HHHHHHHHHHHHcCCCc
Q psy17691        239 QCYSRAIQINPGFA---DAHSNLASIHKDSGKRG  269 (673)
Q Consensus       239 ~~~~~Al~l~p~~~---~a~~~La~~~~~~g~~~  269 (673)
                      ..|+++++..|+++   +++..+|.++.++|+++
T Consensus       168 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~  201 (225)
T 2yhc_A          168 NRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA  201 (225)
T ss_dssp             HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence            99999999999986   68999999999999976

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.62  E-value=2e-15  Score=152.25  Aligned_cols=192  Identities=27%  Similarity=0.297  Sum_probs=148.8

Q ss_pred             HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCc
Q psy17691          2 IDLAIDTYRRAIEL--------QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGN   73 (673)
Q Consensus         2 ~~eAi~~~~kAL~l--------~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~   73 (673)
                      +++|+..|++++++        +|..+.++..+|.++...|+++.+..++..+........                   
T Consensus        17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------   77 (283)
T 3edt_B           17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL-------------------   77 (283)
T ss_dssp             SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------------------
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc-------------------
Confidence            45677777777764        366678888888888888876666666655544321100                   


Q ss_pred             hhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHh-------
Q psy17691         74 RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFS-YIISVLLLIQVSEAEECYNTALRL-------  145 (673)
Q Consensus        74 ~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~-------  145 (673)
                                 +                         ...|....++. .+..+...|++++|+.+|+++++.       
T Consensus        78 -----------~-------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           78 -----------G-------------------------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             -----------C-------------------------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             -----------C-------------------------CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence                       0                         00122233443 344556699999999999999998       


Q ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q psy17691        146 -CPTHADSLNNLANIKREQGYIEEATRLYLKALEV--------FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ--  214 (673)
Q Consensus       146 -~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--  214 (673)
                       +|....++.++|.++...|++++|+.++++++++        .|....++.++|.++..+|++++|+.++++++++.  
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             4667889999999999999999999999999998        67778899999999999999999999999999862  


Q ss_pred             -----------------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        215 -----------------------------------------------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       215 -----------------------------------------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                                                                     |....++..+|.+|..+|++++|+.+|++++++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                                                           334567888999999999999999999998875


Q ss_pred             C
Q psy17691        248 N  248 (673)
Q Consensus       248 ~  248 (673)
                      .
T Consensus       282 ~  282 (283)
T 3edt_B          282 R  282 (283)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.62  E-value=2.1e-15  Score=140.01  Aligned_cols=107  Identities=13%  Similarity=-0.006  Sum_probs=99.0

Q ss_pred             cCCCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17691        112 LSPDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL  190 (673)
Q Consensus       112 l~p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  190 (673)
                      ++|++...+.. +..++..|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+++
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            56667766644 45566799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRIQPSFA  218 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~~p~~~  218 (673)
                      |.+|..+|++++|+.+|++++++.|+..
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999864

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.61  E-value=1.3e-15  Score=160.83  Aligned_cols=135  Identities=13%  Similarity=0.037  Sum_probs=122.4

Q ss_pred             CCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        113 SPDDGTTFS-YIISVLLLIQVSEAEECYNTALRLCPTH---------------ADSLNNLANIKREQGYIEEATRLYLKA  176 (673)
Q Consensus       113 ~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~Lg~~~~~~g~~~eA~~~~~~a  176 (673)
                      .|+....+. .+..++..|++++|+.+|+++++++|++               ..++.++|.+|..+|++++|+.+|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344455554 4455667899999999999999999998               699999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q psy17691        177 LEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA-LQCYSRAIQI  247 (673)
Q Consensus       177 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA-~~~~~~Al~l  247 (673)
                      ++++|++..+++++|.++..+|++++|+..|+++++++|++..++.++|.++..+|++++| ...|++++..
T Consensus       223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 5677777654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.61  E-value=4e-14  Score=125.43  Aligned_cols=131  Identities=32%  Similarity=0.444  Sum_probs=124.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      ..+..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++
T Consensus         6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   85 (136)
T 2fo7_A            6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY   85 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence            34456667999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~  251 (673)
                      ++|++.++++++..|++..++..+|.++...|++++|+.+|+++++.+|++
T Consensus        86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999999999999999999999999998863

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.61  E-value=4.3e-16  Score=164.51  Aligned_cols=141  Identities=16%  Similarity=0.181  Sum_probs=135.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---------------AAAHSNLASV  193 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~la~~  193 (673)
                      ++++++|+..|+++++.+|+++.++.++|.++..+|++++|+.+|+++++++|++               ..+++++|.+
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            4578889999999999999999999999999999999999999999999999999               6999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++.+++.++...|+++
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  281 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  281 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.61  E-value=5.3e-15  Score=152.46  Aligned_cols=170  Identities=16%  Similarity=0.063  Sum_probs=149.7

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhhcCCCcccccc
Q psy17691         14 ELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLM   93 (673)
Q Consensus        14 ~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~l~~~~~a~~~   93 (673)
                      ..-|++.+.++.+|..+...|+++.+...+..+                                               
T Consensus       111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~a-----------------------------------------------  143 (287)
T 3qou_A          111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDA-----------------------------------------------  143 (287)
T ss_dssp             HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------------------------------
T ss_pred             HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH-----------------------------------------------
Confidence            345999999999999999999755555444332                                               


Q ss_pred             cccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691         94 QSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRL  172 (673)
Q Consensus        94 ~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~  172 (673)
                                      +..+|++..++..+ ..+...|++++|+..|+++++.+|+........+..+...++.++|+..
T Consensus       144 ----------------l~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~  207 (287)
T 3qou_A          144 ----------------WQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQ  207 (287)
T ss_dssp             ----------------HHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             ----------------HHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHH
Confidence                            23567777777554 5566799999999999999999998887888888889999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        173 YLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF--ADAYSNMGNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       173 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  246 (673)
                      |+++++.+|++..+++++|.++...|++++|++.|+++++.+|++  ..++.++|.++..+|+.++|...|++++.
T Consensus       208 l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          208 LQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998  88999999999999999999999999885

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.60  E-value=6.7e-15  Score=139.35  Aligned_cols=131  Identities=13%  Similarity=0.103  Sum_probs=120.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HHHH
Q psy17691        128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV-LQQQGKL--TDAL  204 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~eA~  204 (673)
                      ..|++++|+..++++++.+|++..++..+|.++...|++++|+.+|+++++++|++..++.++|.+ +...|++  ++|+
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~  101 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR  101 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence            456899999999999999999999999999999999999999999999999999999999999999 8899999  9999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691        205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL  258 (673)
Q Consensus       205 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~L  258 (673)
                      ..|+++++.+|++..++.++|.++..+|++++|+.+|+++++++|++......+
T Consensus       102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  155 (177)
T 2e2e_A          102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV  155 (177)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            999999999999999999999999999999999999999999999886554333

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.60  E-value=3.5e-15  Score=159.74  Aligned_cols=212  Identities=14%  Similarity=0.150  Sum_probs=162.4

Q ss_pred             CHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCch
Q psy17691          1 LIDLAIDTYRRAIEL------QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNR   74 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l------~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~   74 (673)
                      ++++|+..|++++++      .+..+.++..+|.+|..+|+++.+..++..+..+.......                  
T Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~------------------  179 (383)
T 3ulq_A          118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY------------------  179 (383)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT------------------
T ss_pred             CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc------------------
Confidence            478999999999987      22356788888888888888777777777666554332100                  


Q ss_pred             hhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q psy17691         75 IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTH----  149 (673)
Q Consensus        75 ~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~----  149 (673)
                                                            .+....++ ..+..+...|++++|+.+|++++++.+..    
T Consensus       180 --------------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  221 (383)
T 3ulq_A          180 --------------------------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ  221 (383)
T ss_dssp             --------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             --------------------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH
Confidence                                                  00112233 33455667899999999999999885543    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Q psy17691        150 --ADSLNNLANIKREQGYIEEATRLYLKALE-----VF-PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ-----PS  216 (673)
Q Consensus       150 --~~a~~~Lg~~~~~~g~~~eA~~~~~~al~-----~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~  216 (673)
                        ..++.++|.+|..+|++++|+.+|+++++     .+ |....++.++|.++..+|++++|+.++++++++.     |.
T Consensus       222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  301 (383)
T 3ulq_A          222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI  301 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence              35899999999999999999999999999     46 7778899999999999999999999999999883     33


Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        217 FADAYSNMGNTLKEMQD---IQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       217 ~~~~~~~lg~~~~~~g~---~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ....+..+|.++...|+   +++|+..+++. ...+....++..||.+|...|+++
T Consensus       302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~  356 (383)
T 3ulq_A          302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQ  356 (383)
T ss_dssp             HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHH
Confidence            34456789999999999   78888888776 334445668889999999999875

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.60  E-value=1.7e-14  Score=158.63  Aligned_cols=137  Identities=15%  Similarity=0.126  Sum_probs=98.9

Q ss_pred             HHHHH-HHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17691        119 TFSYI-ISVLLLI---QVSEAEECYNTALRLCPTHADSLNNLANIKREQ----GYIEEATRLYLKALEVFPEFAAAHSNL  190 (673)
Q Consensus       119 ~~~~~-~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~l  190 (673)
                      ++..+ ..+...|   ++++|+.+|+++.+..+..+..++++|.+|...    +++++|+.+|+++.   |+++.+++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            44333 3444566   777777777777777777777777777777654    67777777777776   7777777777


Q ss_pred             HHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        191 ASV-L--QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ-----DIQGALQCYSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       191 a~~-~--~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~eA~~~~~~Al~l~p~~~~a~~~La~~~  262 (673)
                      |.+ +  ...+++++|+++|+++.+..  ++.+++++|.+|. .|     ++++|+.+|+++.   ++++.++++||.+|
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y  328 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY  328 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence            777 3  45677777777777777543  6777777777777 44     7777777777777   77777777777776


Q ss_pred             HH
Q psy17691        263 KD  264 (673)
Q Consensus       263 ~~  264 (673)
                      ..
T Consensus       329 ~~  330 (452)
T 3e4b_A          329 RR  330 (452)
T ss_dssp             HT
T ss_pred             HC
Confidence            65

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.60  E-value=2.3e-14  Score=126.70  Aligned_cols=124  Identities=25%  Similarity=0.348  Sum_probs=116.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       146 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  225 (673)
                      +|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       226 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      .++..+|++++|+.+|+++++++|++..++..++.++...|+++
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=2.2e-14  Score=161.74  Aligned_cols=139  Identities=12%  Similarity=0.020  Sum_probs=133.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q psy17691        131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQG--YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG-KLTDALLHY  207 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~  207 (673)
                      .+++++..++++++.+|++..+|+..+.++...+  ++++|+++++++++.+|.+..+|.+.+.++...| .++++++++
T Consensus        88 ~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~  167 (567)
T 1dce_A           88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  167 (567)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHH
Confidence            4889999999999999999999999999999999  7799999999999999999999999999999999 999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        208 KEAIRIQPSFADAYSNMGNTLKEM--------------QDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       208 ~~al~~~p~~~~~~~~lg~~~~~~--------------g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +++++.+|.+..+|++++.++..+              +.+++|++++.+|+.++|++..+|+.++.++...++++
T Consensus       168 ~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             HTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred             HHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence            999999999999999999999985              66899999999999999999999999999998888755

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.59  E-value=5.6e-15  Score=151.60  Aligned_cols=130  Identities=28%  Similarity=0.358  Sum_probs=115.8

Q ss_pred             hHHH-HHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------
Q psy17691        118 TTFS-YIISVLLLIQVSEAEECYNTALRL--------CPTHADSLNNLANIKREQGYIEEATRLYLKALEVF--------  180 (673)
Q Consensus       118 ~~~~-~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~--------  180 (673)
                      .++. .+..+...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.++++++++.        
T Consensus        70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  149 (311)
T 3nf1_A           70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH  149 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3443 445566799999999999999998        35567899999999999999999999999999884        


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI--------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       181 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      |....++.++|.++...|++++|+++|+++++.        .|....++.++|.++..+|++++|+.+|+++++.
T Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            556788999999999999999999999999998        6777789999999999999999999999999975

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.59  E-value=9.2e-14  Score=155.69  Aligned_cols=152  Identities=13%  Similarity=0.092  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q psy17691        133 SEAEECYNTALRLCPTHADSLNNLANIKRE-------QGYIE-------EATRLYLKALE-VFPEFAAAHSNLASVLQQQ  197 (673)
Q Consensus       133 ~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~-------~g~~~-------eA~~~~~~al~-~~p~~~~~~~~la~~~~~~  197 (673)
                      ++++..|++++..+|+++.+|..+|..+..       .|+++       +|...|+++++ ..|++..+|..+|.++...
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            356667777777777777777777777665       56665       67777777775 6777777777777777777


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCCc------
Q psy17691        198 GKLTDALLHYKEAIRIQPSFA-DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI-HKDSGKRG------  269 (673)
Q Consensus       198 g~~~eA~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~-~~~~g~~~------  269 (673)
                      |++++|.+.|++++++.|.++ .+|.++|.++.++|++++|++.|++|++..|.....+...+.+ +...|+++      
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~  414 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  414 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence            777777777777777777664 4677777777777777777777777777766665555555444 23456554      


Q ss_pred             ---cccCCCCHHHHHHHH
Q psy17691        270 ---FFIRTDLNSAYFWLL  284 (673)
Q Consensus       270 ---l~l~p~~~~a~~~l~  284 (673)
                         ++..|+++.++..++
T Consensus       415 e~al~~~p~~~~~~~~~~  432 (530)
T 2ooe_A          415 ELGLKKYGDIPEYVLAYI  432 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHH
Confidence               556677766665555

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.59  E-value=1.9e-14  Score=128.04  Aligned_cols=122  Identities=22%  Similarity=0.299  Sum_probs=111.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       146 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  225 (673)
                      .|.+..+++.+|.++...|++++|+..|+++++.+|++..+++++|.++...|++++|+..++++++.+|++..++.++|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            35668889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK  267 (673)
Q Consensus       226 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~  267 (673)
                      .++..+|++++|+.+|+++++++|++..++..++.++...|+
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999887764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.59  E-value=1.7e-14  Score=135.04  Aligned_cols=117  Identities=21%  Similarity=0.256  Sum_probs=107.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       146 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  225 (673)
                      ++.++..++.+|.++...|++++|+.+|+++++++|++..+++++|.++..+|++++|+..|+++++++|++..+|+++|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       226 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~  262 (673)
                      .+|..+|++++|+.+|+++++++|++..++.+++...
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999999999999999999999988776665543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.58  E-value=1e-13  Score=155.25  Aligned_cols=209  Identities=11%  Similarity=0.107  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchh
Q psy17691          3 DLAIDTYRRAIELQPNFPDAYCNLANALKE-------KGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRI   75 (673)
Q Consensus         3 ~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~-------~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~   75 (673)
                      +.|+..|++++..+|+++++|+.+|..+..       .|+.+.+.....            +                  
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~------------~------------------  304 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD------------E------------------  304 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH------------H------------------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH------------H------------------
Confidence            367889999999999999999999999886       454331111000            1                  


Q ss_pred             hhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHh-cCCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCH-
Q psy17691         76 RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYA-LSPDDGTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHA-  150 (673)
Q Consensus        76 ~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~-l~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~-  150 (673)
                                                  +...+  ++. ..|++...|...+. +...|++++|...|+++++..|.++ 
T Consensus       305 ----------------------------A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  356 (530)
T 2ooe_A          305 ----------------------------AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT  356 (530)
T ss_dssp             ----------------------------HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH
T ss_pred             ----------------------------HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch
Confidence                                        11111  222 35777777755544 4568999999999999999999985 


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV-LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK  229 (673)
Q Consensus       151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~  229 (673)
                      .+|..+|.++.+.|++++|...|+++++..|.....+...+.+ +...|++++|...|+++++..|+++.+|.+++.++.
T Consensus       357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~  436 (530)
T 2ooe_A          357 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  436 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            6999999999999999999999999999999888777777766 346899999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCCc
Q psy17691        230 EMQDIQGALQCYSRAIQINPGFAD----AHSNLASIHKDSGKRG  269 (673)
Q Consensus       230 ~~g~~~eA~~~~~~Al~l~p~~~~----a~~~La~~~~~~g~~~  269 (673)
                      ..|+.++|...|++++...|.++.    .|..........|+.+
T Consensus       437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~  480 (530)
T 2ooe_A          437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA  480 (530)
T ss_dssp             TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred             hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999998765544    8888888888888765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.58  E-value=5.4e-14  Score=136.82  Aligned_cols=141  Identities=13%  Similarity=0.048  Sum_probs=126.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK  199 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  199 (673)
                      +..+..++..|++++|+..|++++  +| ++.+++++|.++...|++++|+.+|+++++++|++..+++++|.++...|+
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence            355566778999999999999996  33 789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        200 LTDALLHYKEAIRIQPSFA----------------DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK  263 (673)
Q Consensus       200 ~~eA~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~  263 (673)
                      +++|++.|+++++..|++.                .+++++|.++..+|++++|+.+|+++++++|++.......+....
T Consensus        87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~  166 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV  166 (213)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence            9999999999999888776                999999999999999999999999999999987655544444433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.58  E-value=5e-14  Score=154.86  Aligned_cols=239  Identities=14%  Similarity=0.079  Sum_probs=183.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------------CCcHHHHHHHHHHHHHcCChhhhcCC---h
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ----------------PNFPDAYCNLANALKEKGQINVLHKP---P   62 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~----------------~~~a~a~~~la~~l~~~g~~~~A~~~---~   62 (673)
                      +++|+..|+++++.  +++.++++||.+|...++                ...+.+++.+|..+...+.++++...   .
T Consensus        90 ~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~  167 (452)
T 3e4b_A           90 HHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI  167 (452)
T ss_dssp             HHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence            56788888888874  445588888888887664                23456777888888888876665543   3


Q ss_pred             hhHHhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHH--hcCCCChhHHHHHHHHHHc-----CCHHHH
Q psy17691         63 YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY--ALSPDDGTTFSYIISVLLL-----IQVSEA  135 (673)
Q Consensus        63 ~~~~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~--~l~p~~~~~~~~~~~~~~~-----g~~~~A  135 (673)
                      ++.+....|.....++.++...+...           ...+++..+..  ...+.....+..++.++..     +++++|
T Consensus       168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~-----------~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A  236 (452)
T 3e4b_A          168 CKAALNTTDICYVELATVYQKKQQPE-----------QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA  236 (452)
T ss_dssp             HHHHTTTCTTHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCcc-----------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence            33344445555566777776644211           23445555543  4455556655666666654     599999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHH
Q psy17691        136 EECYNTALRLCPTHADSLNNLANI-K--REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG-----KLTDALLHY  207 (673)
Q Consensus       136 ~~~~~~al~~~p~~~~a~~~Lg~~-~--~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~eA~~~~  207 (673)
                      +.+|+++.   |+++.++++||.+ +  ...+++++|+.+|+++.+.  +++.++++||.+|. .|     ++++|+.+|
T Consensus       237 ~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~  310 (452)
T 3e4b_A          237 QALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHF  310 (452)
T ss_dssp             HHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred             HHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence            99999998   8999999999999 4  5789999999999999865  58999999999998 56     999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        208 KEAIRIQPSFADAYSNMGNTLKE----MQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       208 ~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      +++.   +.++.++++||.+|..    ..++++|+.+|+++.+  .+++.+.++||.+|..
T Consensus       311 ~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          311 EKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQ  366 (452)
T ss_dssp             HTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred             HHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHh
Confidence            9999   8899999999999987    4599999999999986  5678899999999864

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.58  E-value=3.3e-13  Score=140.65  Aligned_cols=207  Identities=12%  Similarity=0.047  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhh
Q psy17691          3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSS   82 (673)
Q Consensus         3 ~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~   82 (673)
                      ++|+..+.++|.++|++..+|...+.++..+++.......   ...      ++++                        
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~---~~~------l~~E------------------------   93 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEES---AAL------VKAE------------------------   93 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHH---HHH------HHHH------------------------
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhh---hHH------HHHH------------------------
Confidence            5899999999999999999999999999887631111000   000      0000                        


Q ss_pred             hcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHH-HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691         83 DFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVL-LLI--QVSEAEECYNTALRLCPTHADSLNNLANI  159 (673)
Q Consensus        83 ~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~-~~g--~~~~A~~~~~~al~~~p~~~~a~~~Lg~~  159 (673)
                                          -..-...+..+|.+..+|..-+.++ ..+  .+++++.++.++++.+|.+..+|...+.+
T Consensus        94 --------------------L~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~v  153 (331)
T 3dss_A           94 --------------------LGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFV  153 (331)
T ss_dssp             --------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             --------------------HHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                                0011124456888888886655444 466  48999999999999999999999999999


Q ss_pred             HHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691        160 KREQGY-IEEATRLYLKALEVFPEFAAAHSNLASVLQQQ--------------GKLTDALLHYKEAIRIQPSFADAYSNM  224 (673)
Q Consensus       160 ~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~--------------g~~~eA~~~~~~al~~~p~~~~~~~~l  224 (673)
                      +...|. ++++++++.++++.+|.+..+|++++.++...              +.++++++++.+++..+|++..+|+.+
T Consensus       154 l~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~  233 (331)
T 3dss_A          154 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH  233 (331)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999998 68999999999999999999999999998877              568899999999999999999999876


Q ss_pred             HHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        225 GNTLKEM-----------QDIQGALQCYSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       225 g~~~~~~-----------g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~  262 (673)
                      ..++...           +.+++++++++++++++|++.-.+..++.+.
T Consensus       234 r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~  282 (331)
T 3dss_A          234 RWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM  282 (331)
T ss_dssp             HHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence            6666555           4588999999999999999865555554443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.58  E-value=9e-14  Score=136.43  Aligned_cols=187  Identities=15%  Similarity=0.095  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhh
Q psy17691          3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSS   82 (673)
Q Consensus         3 ~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~   82 (673)
                      .+|+..|+++.+.  .++.+++.||.+|...++++.+..++..+..                                  
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------------------------------   46 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA----------------------------------   46 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------------------------------
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----------------------------------
Confidence            4688999999876  7899999999999998866666555554421                                  


Q ss_pred             hcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691         83 DFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLI----QVSEAEECYNTALRLCPTHADSLNNLAN  158 (673)
Q Consensus        83 ~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g----~~~~A~~~~~~al~~~p~~~~a~~~Lg~  158 (673)
                                                     ..++.++..++.++..+    ++++|+.+|+++.+  +.++.++++||.
T Consensus        47 -------------------------------~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~   93 (212)
T 3rjv_A           47 -------------------------------QGDGDALALLAQLKIRNPQQADYPQARQLAEKAVE--AGSKSGEIVLAR   93 (212)
T ss_dssp             -------------------------------TTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred             -------------------------------cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHH
Confidence                                           22344444444444445    89999999999965  578999999999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        159 IKRE----QGYIEEATRLYLKALEVFP--EFAAAHSNLASVLQQ----QGKLTDALLHYKEAIRIQPSFADAYSNMGNTL  228 (673)
Q Consensus       159 ~~~~----~g~~~eA~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  228 (673)
                      +|..    .+++++|+.+|+++.+..+  .++.++++||.+|..    .+++++|+.+|+++++. +.++.++++||.+|
T Consensus        94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y  172 (212)
T 3rjv_A           94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMF  172 (212)
T ss_dssp             HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence            9998    8999999999999999988  458999999999999    88999999999999998 66788999999999


Q ss_pred             HHc-C-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        229 KEM-Q-----DIQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       229 ~~~-g-----~~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      ... |     ++++|+.+|+++.+..  +..+...|+.+
T Consensus       173 ~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l  209 (212)
T 3rjv_A          173 QQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRI  209 (212)
T ss_dssp             HHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred             HcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHh
Confidence            875 3     8999999999999884  56666666554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.57  E-value=1.1e-14  Score=134.50  Aligned_cols=112  Identities=13%  Similarity=0.041  Sum_probs=99.8

Q ss_pred             hcCCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy17691        111 ALSPDDGTTFS-YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN  189 (673)
Q Consensus       111 ~l~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  189 (673)
                      .++|++...+. .+..++..|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++++
T Consensus        15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   94 (148)
T 2vgx_A           15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH   94 (148)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            34555555554 34455668899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYS  222 (673)
Q Consensus       190 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  222 (673)
                      +|.++..+|++++|++.|+++++++|+++....
T Consensus        95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           95 AAECLLQXGELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence            999999999999999999999999998776543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.57  E-value=5.7e-15  Score=158.77  Aligned_cols=233  Identities=19%  Similarity=0.181  Sum_probs=168.1

Q ss_pred             CHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc-CChhhhcCChhhHHhhcCCCc
Q psy17691          1 LIDLAIDTYRRAIEL------QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEK-GQINVLHKPPYKYTRELAPGN   73 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l------~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~-g~~~~A~~~~~~~~~~l~p~~   73 (673)
                      ++++|+..|++++++      +|....++..+|.+|...|+++.+..++..+..+... ++....            ...
T Consensus       101 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------------~~~  168 (411)
T 4a1s_A          101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE------------GRA  168 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH------------HHH
T ss_pred             CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH------------HHH
Confidence            478999999999998      6778899999999999999877776666665554322 110000            001


Q ss_pred             hhhhhhhhhhcCC----------CcccccccccCCCCchhHHHHHHH------hc--CCCChhHH-HHHHHHHHcCCHHH
Q psy17691         74 RIRIGYVSSDFGN----------HPTSHLMQSVPGMHNKSRVEIFCY------AL--SPDDGTTF-SYIISVLLLIQVSE  134 (673)
Q Consensus        74 ~~~l~~~~~~l~~----------~~~a~~~~~~~~~~~~~a~~~~~~------~l--~p~~~~~~-~~~~~~~~~g~~~~  134 (673)
                      ...++.++...++          ...+..       ....++..+..      ..  .+....++ ..+..+...|++++
T Consensus       169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  241 (411)
T 4a1s_A          169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKE-------ALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQA  241 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCCHHHHH-------HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHcCcccccccchhhhhhhhH-------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHH
Confidence            1233444444433          000000       01112221111      01  11222344 34455667999999


Q ss_pred             HHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHH
Q psy17691        135 AEECYNTALRLCPTHA------DSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTD  202 (673)
Q Consensus       135 A~~~~~~al~~~p~~~------~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~e  202 (673)
                      |+.+|++++++.+...      .++..+|.+|..+|++++|+.+|++++++.+..      ..++.++|.++...|++++
T Consensus       242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  321 (411)
T 4a1s_A          242 AIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT  321 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            9999999999876543      389999999999999999999999999987754      6789999999999999999


Q ss_pred             HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        203 ALLHYKEAIRIQPSF------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       203 A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~  252 (673)
                      |+.+|++++++.+..      ..++..+|.+|..+|++++|+.+|++++++.+...
T Consensus       322 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  377 (411)
T 4a1s_A          322 AIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX  377 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence            999999999985432      56899999999999999999999999999987543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.56  E-value=3.9e-14  Score=143.83  Aligned_cols=223  Identities=10%  Similarity=-0.035  Sum_probs=158.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      ++++|++.|.++++++|+..++|.+++.|    |+ ....++..+..       ..+++. .++....+.|......-.+
T Consensus        21 d~~~A~~~F~~a~~~dP~~~Daw~g~~a~----g~-~~~~~L~~~~r-------~~~a~~-~~~~~l~l~p~~l~a~~~~   87 (282)
T 4f3v_A           21 SEARSLDLFTEITNYDESACDAWIGRIRC----GD-TDRVTLFRAWY-------SRRNFG-QLSGSVQISMSTLNARIAI   87 (282)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHT----TC-CCHHHHHHHHH-------TGGGTT-HHHHTTTCCGGGGCCEEEC
T ss_pred             CHHHHHHHHHHHHHhChhhhHHHHhHHHc----cC-CcHHHHHHHHH-------HHHHHH-HHHHHhcCChhhhhhhhcc
Confidence            46789999999999999999999999433    22 11122222111       122221 2333334444332100000


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIK  160 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~  160 (673)
                         .+.+..-         .         ......+...+.++..+...|++++|.+.|+.++...|++. +.+.+|.++
T Consensus        88 ---~g~y~~~---------~---------~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~  145 (282)
T 4f3v_A           88 ---GGLYGDI---------T---------YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVY  145 (282)
T ss_dssp             ---CTTTCCC---------E---------EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHH
T ss_pred             ---CCccccc---------c---------cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHH
Confidence               0000000         0         00011122234566777789999999999999999999988 999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHH
Q psy17691        161 REQGYIEEATRLYLKALEVFPEF--AAAHSNLASVLQQQGKLTDALLHYKEAIRIQ--PS-FADAYSNMGNTLKEMQDIQ  235 (673)
Q Consensus       161 ~~~g~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~-~~~~~~~lg~~~~~~g~~~  235 (673)
                      .+.+++++|+.+|+++.+..+..  ..+++++|.++..+|++++|+.+|++++...  |. ..++++++|.++.++|+.+
T Consensus       146 ~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~d  225 (282)
T 4f3v_A          146 GAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES  225 (282)
T ss_dssp             HHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHH
T ss_pred             HHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHH
Confidence            99999999999999887753222  4589999999999999999999999998654  55 6679999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        236 GALQCYSRAIQINPGFADAHSNLA  259 (673)
Q Consensus       236 eA~~~~~~Al~l~p~~~~a~~~La  259 (673)
                      +|...|++++..+|+ ..++..|.
T Consensus       226 eA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          226 AAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHhcCCc-HHHHHHHh
Confidence            999999999999999 87776663

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.56  E-value=1.7e-14  Score=153.94  Aligned_cols=244  Identities=18%  Similarity=0.142  Sum_probs=163.5

Q ss_pred             CCHHHHHHHHHHHHHcCC---------------CCc----HHHHHHHHHHHHHcCChhhhcCChhhHHhhcCC---C---
Q psy17691         18 NFPDAYCNLANALKEKGQ---------------PNF----PDAYCNLANALKEKGQINVLHKPPYKYTRELAP---G---   72 (673)
Q Consensus        18 ~~~~a~~~Lg~~~~~~g~---------------~~~----a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p---~---   72 (673)
                      ....++..+|.++...|+               ++.    +..+..+|.++...|++++|.. .++.+..+..   +   
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE-YHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHhccccHH
Confidence            456677888888888886               343    4678888999999999988875 3333333211   1   


Q ss_pred             ---chhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCC-CChhHHHH-HHHHHHcCC----------------
Q psy17691         73 ---NRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSP-DDGTTFSY-IISVLLLIQ----------------  131 (673)
Q Consensus        73 ---~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p-~~~~~~~~-~~~~~~~g~----------------  131 (673)
                         ....++.++...++...+...       ...++.......++ ....++.. +..+...|+                
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~  158 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVC-------CQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE  158 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence               123455566665554333111       01111111110000 01223333 344556778                


Q ss_pred             ----HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHH
Q psy17691        132 ----VSEAEECYNTALRL------CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA------AAHSNLASVLQ  195 (673)
Q Consensus       132 ----~~~A~~~~~~al~~------~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~la~~~~  195 (673)
                          +++|+.++++++++      .+....++.++|.++..+|++++|+.++++++++.+...      .++.++|.++.
T Consensus       159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  238 (406)
T 3sf4_A          159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI  238 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence                88888888888876      233456788888888888888888888888888765543      37888888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q psy17691        196 QQGKLTDALLHYKEAIRIQPSF------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF------ADAHSNLASIHK  263 (673)
Q Consensus       196 ~~g~~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~La~~~~  263 (673)
                      ..|++++|+.+|++++++.+..      ..++.++|.++..+|++++|+.+|++++++.+..      ..++.++|.++.
T Consensus       239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~  318 (406)
T 3sf4_A          239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT  318 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            8888888888888888876655      6678888888888888888888888888875443      567788888888


Q ss_pred             HcCCCc
Q psy17691        264 DSGKRG  269 (673)
Q Consensus       264 ~~g~~~  269 (673)
                      ..|+++
T Consensus       319 ~~g~~~  324 (406)
T 3sf4_A          319 ALGNHD  324 (406)
T ss_dssp             HHTCHH
T ss_pred             HcCCHH
Confidence            888865

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.56  E-value=6.5e-14  Score=125.68  Aligned_cols=111  Identities=23%  Similarity=0.265  Sum_probs=98.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q psy17691        149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF-------ADAY  221 (673)
Q Consensus       149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~  221 (673)
                      .+.++.++|..++++|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|++.|+++++++|++       ..++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999998765       3588


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        222 SNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS  260 (673)
Q Consensus       222 ~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~  260 (673)
                      .++|.++..+|++++|+++|+++++..|+ ++....|..
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  124 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE  124 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence            99999999999999999999999999885 555555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.56  E-value=2.1e-13  Score=119.34  Aligned_cols=121  Identities=33%  Similarity=0.527  Sum_probs=110.2

Q ss_pred             CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691        146 CPTH-ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM  224 (673)
Q Consensus       146 ~p~~-~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  224 (673)
                      +|.. ..+++.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            4555 778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG  266 (673)
Q Consensus       225 g~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g  266 (673)
                      |.++...|++++|+.+|+++++.+|++..++.+++.++...|
T Consensus        84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999887765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.56  E-value=1.3e-14  Score=132.64  Aligned_cols=119  Identities=14%  Similarity=0.012  Sum_probs=103.8

Q ss_pred             cCCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17691        112 LSPDDGTTFS-YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL  190 (673)
Q Consensus       112 l~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  190 (673)
                      .+|++...+. .+..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+.+|+++++++|+++.+++++
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            3455555543 445566788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE  230 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  230 (673)
                      |.++...|++++|++.|+++++++|+++........+...
T Consensus        93 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  132 (142)
T 2xcb_A           93 AECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM  132 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            9999999999999999999999999887766555544433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.55  E-value=2.3e-13  Score=142.48  Aligned_cols=138  Identities=12%  Similarity=-0.014  Sum_probs=123.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-------
Q psy17691        131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQ-G-YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLT-------  201 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~-g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-------  201 (673)
                      .+++++..+++++..+|++..+|+..+.++... + +++++++++.++++.+|.+..+|+..+.++...|+++       
T Consensus       104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~  183 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW  183 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence            488899999999999999999999999999887 7 8899999999999999999999999999988888877       


Q ss_pred             -HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        202 -DALLHYKEAIRIQPSFADAYSNMGNTLKEMQD-------IQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       202 -eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                       +++++++++++.+|.|..+|++++.++..+++       ++++++++++++.++|++..+|+++..++...|+.
T Consensus       184 ~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          184 GSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence             89999999999999999999999999988887       78999999999999999999999988888887764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.54  E-value=2e-14  Score=148.29  Aligned_cols=240  Identities=18%  Similarity=0.146  Sum_probs=163.6

Q ss_pred             CHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCch
Q psy17691          1 LIDLAIDTYRRAIEL------QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNR   74 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l------~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~   74 (673)
                      ++++|+..+++++++      .|....++..+|.++...|+++.+..++..+..+..........           ....
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----------~~~~  126 (338)
T 3ro2_A           58 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE-----------ARAL  126 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-----------HHHH
T ss_pred             CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH-----------HHHH
Confidence            478999999999987      55667899999999999998777777766665554332110000           0011


Q ss_pred             hhhhhhhhhcCCCcccccccccCC------CCchhHHHHHHH------hc--CCCChhHH-HHHHHHHHcCCHHHHHHHH
Q psy17691         75 IRIGYVSSDFGNHPTSHLMQSVPG------MHNKSRVEIFCY------AL--SPDDGTTF-SYIISVLLLIQVSEAEECY  139 (673)
Q Consensus        75 ~~l~~~~~~l~~~~~a~~~~~~~~------~~~~~a~~~~~~------~l--~p~~~~~~-~~~~~~~~~g~~~~A~~~~  139 (673)
                      ..++.++...++............      .....++..+..      ..  .+.....+ ..+..+...|++++|+.++
T Consensus       127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  206 (338)
T 3ro2_A          127 YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH  206 (338)
T ss_dssp             HHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            233444444333100000000000      001122222211      11  11112334 3345566799999999999


Q ss_pred             HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691        140 NTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTDALLHY  207 (673)
Q Consensus       140 ~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~  207 (673)
                      +++++..+..      ..++..+|.++...|++++|+.++++++++.+..      ..++.++|.++...|++++|+.++
T Consensus       207 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (338)
T 3ro2_A          207 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH  286 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999886543      3489999999999999999999999999987665      778999999999999999999999


Q ss_pred             HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        208 KEAIRIQPSF------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       208 ~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~  251 (673)
                      +++++..+..      ..++..+|.+|..+|++++|..+|++++++.+..
T Consensus       287 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          287 LKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            9999885542      5588999999999999999999999999987653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.54  E-value=3e-13  Score=125.35  Aligned_cols=127  Identities=16%  Similarity=0.135  Sum_probs=116.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      ..+..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++.+|.+..+++++|.++...|++
T Consensus        18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~   97 (166)
T 1a17_A           18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   97 (166)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH
Confidence            44456677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh
Q psy17691        201 TDALLHYKEAIRIQPSFADAYSNMGNT--LKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~eA~~~~~~Al~l  247 (673)
                      ++|+.+|+++++.+|++..++..++.+  +...|++++|+..++++..+
T Consensus        98 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           98 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            999999999999999999888555554  88899999999999987654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.54  E-value=1.3e-14  Score=140.24  Aligned_cols=142  Identities=17%  Similarity=0.138  Sum_probs=120.8

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHH
Q psy17691        128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA----------------AAHSNLA  191 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~----------------~~~~~la  191 (673)
                      ..|++++|.+.++...+..+.....+..+|..+...|++++|+..|++++++.|.++                .++.++|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la   95 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA   95 (198)
T ss_dssp             ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence            456777777777777776677788889999999999999999999999999988876                8899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       192 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      .++...|++++|+.+++++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++.+++.++...++..
T Consensus        96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  173 (198)
T 2fbn_A           96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  173 (198)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999888776543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.54  E-value=2.1e-14  Score=132.68  Aligned_cols=111  Identities=15%  Similarity=0.106  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPE-------FAA-----AHSNLASVLQQQGKLTDALLHYKEAIRI----  213 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~eA~~~~~~al~~----  213 (673)
                      +..+.++|..++..|+|++|+..|+++++++|+       +..     +|.|+|.++..+|++++|+.+|+++|++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            456788888888899999999999999998888       444     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        214 ---QPSFADAY----SNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS  260 (673)
Q Consensus       214 ---~p~~~~~~----~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~  260 (673)
                         +|++..+|    +++|.++..+|++++|+.+|+++++++|++..+...+..
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~  144 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER  144 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence               99999999    999999999999999999999999999887655444433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.53  E-value=1.8e-13  Score=123.09  Aligned_cols=121  Identities=21%  Similarity=0.145  Sum_probs=108.6

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        144 RLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN  223 (673)
Q Consensus       144 ~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  223 (673)
                      ..+|.++..+..+|.++...|++++|+.+|+++++.+|++..+++++|.++..+|++++|+..|+++++++|+++.++.+
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH
Q psy17691        224 MGNTLKEMQDIQGALQCYSRAIQINPG-----FADAHSNLASIHKD  264 (673)
Q Consensus       224 lg~~~~~~g~~~eA~~~~~~Al~l~p~-----~~~a~~~La~~~~~  264 (673)
                      +|.++..+|++++|+.+|+++++++|+     +..+...+..+...
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887     67777777666543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.53  E-value=3.5e-15  Score=164.39  Aligned_cols=141  Identities=16%  Similarity=0.170  Sum_probs=129.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---------------AAAHSNLASV  193 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~la~~  193 (673)
                      ++++++|+..|+++++..|+.+.++.++|.+++.+|+|++|+..|+++++++|.+               ..+|+++|.+
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            4577889999999999999999999999999999999999999999999999998               6899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      |.++|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++.+++.++..+|+++
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998887754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=2.2e-13  Score=121.23  Aligned_cols=111  Identities=17%  Similarity=0.043  Sum_probs=104.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      ..+..++..|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++..+++++|.++..+|++
T Consensus         9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~   88 (126)
T 3upv_A            9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY   88 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCH
Confidence            44566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHc
Q psy17691        201 TDALLHYKEAIRIQ------PSFADAYSNMGNTLKEM  231 (673)
Q Consensus       201 ~eA~~~~~~al~~~------p~~~~~~~~lg~~~~~~  231 (673)
                      ++|+..|+++++++      |++..++..++.+..++
T Consensus        89 ~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           89 ASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999      99999999998887653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.52  E-value=4.5e-13  Score=116.04  Aligned_cols=114  Identities=17%  Similarity=0.295  Sum_probs=106.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL  228 (673)
Q Consensus       149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  228 (673)
                      .+..++.+|.++...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..++++++.+|++..++.++|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       229 ~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~  262 (673)
                      ..+|++++|+.+|+++++.+|++..++..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999999988775

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.51  E-value=1.1e-13  Score=139.51  Aligned_cols=153  Identities=27%  Similarity=0.311  Sum_probs=130.1

Q ss_pred             ChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Q psy17691        116 DGTTFSY-IISVLLLIQVSEAEECYNTALRLC--------PTHADSLNNLANIKREQGYIEEATRLYLKALEV-------  179 (673)
Q Consensus       116 ~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-------  179 (673)
                      ...++.. +..+...|++++|+.+|+++++..        |....++..+|.++..+|++++|+.+|++++++       
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            3445544 455667999999999999999883        556789999999999999999999999999998       


Q ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q psy17691        180 -FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI--------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI---  247 (673)
Q Consensus       180 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l---  247 (673)
                       +|....++.++|.++...|++++|+.+|++++++        .|....++.++|.++..+|++++|+.+|++++++   
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             4667889999999999999999999999999999        6777889999999999999999999999999987   


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCC
Q psy17691        248 ------NPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       248 ------~p~~~~a~~~La~~~~~~g~~  268 (673)
                            .+.....+..++..+...+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (283)
T 3edt_B          202 KEFGSVNGDNKPIWMHAEEREESKDKR  228 (283)
T ss_dssp             HHSSSCCSSCCCHHHHHHHHHHTTCCC
T ss_pred             hcCCCcchhHHHHHHHHHHHHhcCCch
Confidence                  444555666666665554443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.51  E-value=8.5e-14  Score=148.82  Aligned_cols=212  Identities=17%  Similarity=0.088  Sum_probs=155.8

Q ss_pred             CHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCch
Q psy17691          1 LIDLAIDTYRRAIELQ------PNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNR   74 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~------P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~   74 (673)
                      ++++|+..|++|+++.      +..+.++.++|.+|..+|+++.+..++..+..+......                   
T Consensus       116 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-------------------  176 (378)
T 3q15_A          116 EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL-------------------  176 (378)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT-------------------
T ss_pred             CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC-------------------
Confidence            4778888888888763      234567777888888887766666666665554432110                   


Q ss_pred             hhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q psy17691         75 IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPT-----  148 (673)
Q Consensus        75 ~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~-----  148 (673)
                                                           ..+....++ ..+..+...|++++|+.+|++++++.+.     
T Consensus       177 -------------------------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  219 (378)
T 3q15_A          177 -------------------------------------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR  219 (378)
T ss_dssp             -------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             -------------------------------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence                                                 000112233 3345566789999999999999987431     


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC
Q psy17691        149 -HADSLNNLANIKREQGYIEEATRLYLKALE-----VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ-----PSF  217 (673)
Q Consensus       149 -~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~~  217 (673)
                       ...++.++|.+|..+|++++|+.+++++++     .+|....++.++|.++..+|++++|+.++++++++.     +..
T Consensus       220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  299 (378)
T 3q15_A          220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY  299 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence             245788999999999999999999999999     677778899999999999999999999999999984     334


Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        218 ADAYSNMGNTLKEMQD---IQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       218 ~~~~~~lg~~~~~~g~---~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ...+..++.++...++   +.+|+.++++. ...+.....+..+|.+|...|+++
T Consensus       300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~  353 (378)
T 3q15_A          300 KELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFE  353 (378)
T ss_dssp             HHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHH
Confidence            4566778888888888   78888887762 223344567788999999998875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.51  E-value=1.1e-13  Score=123.15  Aligned_cols=100  Identities=13%  Similarity=0.076  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ  232 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g  232 (673)
                      ++.+|..+.+.|++++|+..|+++++.+|++..+|+++|.++...|++++|+..|+++++++|++..++.++|.++..+|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHHhCCCCH
Q psy17691        233 DIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       233 ~~~eA~~~~~~Al~l~p~~~  252 (673)
                      ++++|+.+|+++++++|++.
T Consensus       100 ~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHC------
T ss_pred             CHHHHHHHHHHHHHhCcCCC
Confidence            77777777777777776654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.51  E-value=5.5e-13  Score=138.10  Aligned_cols=162  Identities=8%  Similarity=-0.035  Sum_probs=102.4

Q ss_pred             HHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----H
Q psy17691        123 IISVLLLIQ-VSEAEECYNTALRLCPTHADSLNNLANIKREQG--YIEEATRLYLKALEVFPEFAAAHSNLASVL----Q  195 (673)
Q Consensus       123 ~~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~----~  195 (673)
                      .......|. .++|+.++.++|.++|++..+|+..+.++...+  +++++++++.+++..+|++..+|+..+.++    .
T Consensus        39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~  118 (306)
T 3dra_A           39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIME  118 (306)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence            333344443 346666666666666666666666666666666  666666666666666666666666666666    4


Q ss_pred             Hc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---
Q psy17691        196 QQ---GKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ--GALQCYSRAIQINPGFADAHSNLASIHKDSGK---  267 (673)
Q Consensus       196 ~~---g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~---  267 (673)
                      ..   ++++++++++.++++.+|++..+|+..+.++...|+++  ++++++.++++.+|.+..+|.+.+.+....|+   
T Consensus       119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~  198 (306)
T 3dra_A          119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT  198 (306)
T ss_dssp             HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred             hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch
Confidence            44   56666666666666666666666666666666666666  66666666666666666666666666665554   


Q ss_pred             ---Cc---------cccCCCCHHHHHHHH
Q psy17691        268 ---RG---------FFIRTDLNSAYFWLL  284 (673)
Q Consensus       268 ---~~---------l~l~p~~~~a~~~l~  284 (673)
                         ++         +..+|+|.++++.++
T Consensus       199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~  227 (306)
T 3dra_A          199 DNTIDEELNYVKDKIVKCPQNPSTWNYLL  227 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence               22         456666666665554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.51  E-value=1.2e-13  Score=128.93  Aligned_cols=117  Identities=15%  Similarity=0.082  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEV------------------FPEFAAAHSNLASVLQQQGKLTDALLHYKEAI  211 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  211 (673)
                      +..+..+|..++..|++++|+..|++++++                  +|.+..+++++|.++..+|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567788888888888888888888888888                  67777899999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcC
Q psy17691        212 RIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA-DAHSNLASIHKDSG  266 (673)
Q Consensus       212 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~-~a~~~La~~~~~~g  266 (673)
                      +++|+++.+++++|.+|..+|++++|+.+|+++++++|++. .+...++.+....+
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998 66777777765543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=4.6e-13  Score=121.54  Aligned_cols=120  Identities=18%  Similarity=0.117  Sum_probs=105.5

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691        145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY  221 (673)
Q Consensus       145 ~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  221 (673)
                      .+|.+...++.+|..+...|++++|+.+|+++++.+|++   ..++.++|.++...|++++|+..++++++.+|++..++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            457788888899999999999999999999999988887   88889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        222 SNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       222 ~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      .++|.++..+|++++|+.+|+++++++|++..++..++.+...
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998888888777543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.49  E-value=1.2e-13  Score=147.76  Aligned_cols=151  Identities=17%  Similarity=0.124  Sum_probs=128.7

Q ss_pred             hHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Q psy17691        118 TTFS-YIISVLLLIQVSEAEECYNTALRLCPTH-------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------  183 (673)
Q Consensus       118 ~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------  183 (673)
                      .++. .+..+...|++++|+.++++++++.+..       ..++.++|.+|..+|++++|+.+|++++++.+..      
T Consensus       144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  223 (383)
T 3ulq_A          144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM  223 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence            3443 4455667999999999999999985433       4689999999999999999999999999986543      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH
Q psy17691        184 AAAHSNLASVLQQQGKLTDALLHYKEAIR-----IQ-PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN-----PGFA  252 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~-----~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~-----p~~~  252 (673)
                      ..++.++|.+|..+|++++|+.+|+++++     .+ |....++.++|.++..+|++++|+.++++++++.     |...
T Consensus       224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  303 (383)
T 3ulq_A          224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL  303 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            35899999999999999999999999999     46 7788999999999999999999999999999983     3334


Q ss_pred             HHHHHHHHHHHHcCCC
Q psy17691        253 DAHSNLASIHKDSGKR  268 (673)
Q Consensus       253 ~a~~~La~~~~~~g~~  268 (673)
                      ..+..++.++...|+.
T Consensus       304 ~~~~~l~~~~~~~~~~  319 (383)
T 3ulq_A          304 SEFEFLKSLYLSGPDE  319 (383)
T ss_dssp             HHHHHHHHHHTSSCCH
T ss_pred             HHHHHHHHHHhCCCcH
Confidence            4467788898888873

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.48  E-value=8.4e-13  Score=116.76  Aligned_cols=119  Identities=32%  Similarity=0.480  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE  230 (673)
Q Consensus       151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  230 (673)
                      .+++.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        231 MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       231 ~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      .|++++|+.+++++++..|++..++..++.++...|+++
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  120 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD  120 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHH
Confidence            999999999999999999999999999999999999875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.48  E-value=3.6e-13  Score=127.34  Aligned_cols=94  Identities=18%  Similarity=0.124  Sum_probs=88.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANI-KREQGYI--EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALL  205 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~-~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  205 (673)
                      .|++++|+.+|+++++++|+++.++..+|.+ +...|++  ++|+.+++++++.+|++..+++++|.++...|++++|+.
T Consensus        57 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  136 (177)
T 2e2e_A           57 QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE  136 (177)
T ss_dssp             TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH
Confidence            4489999999999999999999999999999 8899999  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHH
Q psy17691        206 HYKEAIRIQPSFADAYS  222 (673)
Q Consensus       206 ~~~~al~~~p~~~~~~~  222 (673)
                      .|+++++.+|++.....
T Consensus       137 ~~~~al~~~p~~~~~~~  153 (177)
T 2e2e_A          137 LWQKVMDLNSPRINRTQ  153 (177)
T ss_dssp             HHHHHHHTCCTTSCHHH
T ss_pred             HHHHHHhhCCCCccHHH
Confidence            99999999999865443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.48  E-value=6.5e-13  Score=137.97  Aligned_cols=202  Identities=17%  Similarity=0.131  Sum_probs=146.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCCCcHHHHH-HHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKE-KGQPNFPDAYC-NLANALKEKGQINVLHKPPYKYTRELAPGNRIRIG   78 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~-~g~~~~a~a~~-~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~   78 (673)
                      ++++|.++++++.+..+..          ++. .++++.+..++ ..+.++...|++++|.. .+..+..+.+       
T Consensus         6 ~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~-~~~~al~~~~-------   67 (307)
T 2ifu_A            6 KISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKD-AYLQEAEAHA-------   67 (307)
T ss_dssp             HHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHH-------
Confidence            4789999999999876642          111 24444444333 34566777788777764 2222221110       


Q ss_pred             hhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q psy17691         79 YVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYII-SVLLLIQVSEAEECYNTALRLCPTH------AD  151 (673)
Q Consensus        79 ~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p~~------~~  151 (673)
                          ..+.                          ......++..++ .+..+|++++|+.+|++++++.+..      ..
T Consensus        68 ----~~~~--------------------------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           68 ----NNRS--------------------------LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             ----HTTC--------------------------HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ----HcCC--------------------------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                0000                          001123444444 4456899999999999999985432      56


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q psy17691        152 SLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF------AD  219 (673)
Q Consensus       152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~  219 (673)
                      ++.++|.+|.. |++++|+.+|++++++.+..      ..++.++|.++..+|++++|+.+|++++++.+++      ..
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            88999999998 99999999999999987654      5789999999999999999999999999986543      34


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~  252 (673)
                      ++.++|.++..+|++++|+.+|++++ ++|++.
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            78899999999999999999999999 998764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.47  E-value=4.1e-14  Score=155.82  Aligned_cols=132  Identities=11%  Similarity=0.005  Sum_probs=114.3

Q ss_pred             CCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        114 PDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTH---------------ADSLNNLANIKREQGYIEEATRLYLKAL  177 (673)
Q Consensus       114 p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~Lg~~~~~~g~~~eA~~~~~~al  177 (673)
                      |+....+ ..+..++..|++++|+.+|+++++++|++               ..+++++|.+|.++|++++|+.+|++++
T Consensus       265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  344 (457)
T 1kt0_A          265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL  344 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3444455 44556677999999999999999999998               7999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Q psy17691        178 EVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ-CYSRAI  245 (673)
Q Consensus       178 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~-~~~~Al  245 (673)
                      +++|++..+++++|.+|..+|++++|+..|+++++++|++..++.+++.++..++++++|.. .|++++
T Consensus       345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998875 344443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.47  E-value=8.7e-13  Score=122.19  Aligned_cols=120  Identities=19%  Similarity=0.186  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK  229 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~  229 (673)
                      +..+..+|.++...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..++++++.+|+++.++.++|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCCc
Q psy17691        230 EMQDIQGALQCYSRAIQINPGFADAHSNLASI--HKDSGKRG  269 (673)
Q Consensus       230 ~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~--~~~~g~~~  269 (673)
                      .+|++++|+.+|+++++++|++..++..++.+  +...|+++
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~  134 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE  134 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988665555  66666554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.47  E-value=6.3e-13  Score=118.11  Aligned_cols=120  Identities=17%  Similarity=0.154  Sum_probs=111.1

Q ss_pred             CCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy17691        114 PDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS  192 (673)
Q Consensus       114 p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  192 (673)
                      |.....+.. +..++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++.+|.+..+++++|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            445555544 4556679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD  233 (673)
Q Consensus       193 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  233 (673)
                      ++...|++++|+++|+++++.+|++..++..++.++..+|+
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999988774

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.47  E-value=6.3e-13  Score=124.22  Aligned_cols=114  Identities=20%  Similarity=0.145  Sum_probs=104.0

Q ss_pred             ChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17691        116 DGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL  194 (673)
Q Consensus       116 ~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  194 (673)
                      ....+ ..+..++..|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..+|+++|.++
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34445 44556678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK  229 (673)
Q Consensus       195 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~  229 (673)
                      ..+|++++|+.+|+++++++|++..++.+++....
T Consensus        90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            99999999999999999999999988777765543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.47  E-value=1.5e-12  Score=114.82  Aligned_cols=119  Identities=18%  Similarity=0.218  Sum_probs=110.7

Q ss_pred             ChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17691        116 DGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL  194 (673)
Q Consensus       116 ~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  194 (673)
                      ....+ ..+..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++.+|++..+++.+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            34444 34455667999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI  234 (673)
Q Consensus       195 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  234 (673)
                      ...|++++|+..|+++++.+|++..++..+|.++..+|++
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999998875

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.45  E-value=1.9e-12  Score=114.93  Aligned_cols=116  Identities=17%  Similarity=0.173  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q psy17691        151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFA---AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF---ADAYSNM  224 (673)
Q Consensus       151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l  224 (673)
                      .+++.+|.++...|++++|+..|+++++.+|++.   .+++.+|.++...|++++|+..|+++++.+|++   +.+++++
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3467888888899999999999999998888887   788889999999999999999999999998888   8888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG  266 (673)
Q Consensus       225 g~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g  266 (673)
                      |.++..+|++++|+.+|+++++..|++..+...+..+..-.+
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            999999999999999999999999988877766665544433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.45  E-value=9.8e-13  Score=128.97  Aligned_cols=156  Identities=18%  Similarity=0.107  Sum_probs=136.1

Q ss_pred             HHHHHHHhcCCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHh
Q psy17691        104 RVEIFCYALSPDDGTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG----YIEEATRLYLKALE  178 (673)
Q Consensus       104 a~~~~~~~l~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g----~~~eA~~~~~~al~  178 (673)
                      ++..+....+..++.++..++. +...+++++|+.+|+++++.  .++.++++||.+|.. +    ++++|+.+|+++.+
T Consensus         5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~   81 (212)
T 3rjv_A            5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE   81 (212)
T ss_dssp             TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence            3444545555677777766554 45689999999999999875  689999999999998 7    99999999999965


Q ss_pred             hCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q psy17691        179 VFPEFAAAHSNLASVLQQ----QGKLTDALLHYKEAIRIQP--SFADAYSNMGNTLKE----MQDIQGALQCYSRAIQIN  248 (673)
Q Consensus       179 ~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p--~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~l~  248 (673)
                        ++++.++++||.+|..    .+++++|+++|+++++..+  +++.++++||.+|..    .+++++|+.+|+++++. 
T Consensus        82 --~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-  158 (212)
T 3rjv_A           82 --AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-  158 (212)
T ss_dssp             --TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-
T ss_pred             --CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-
Confidence              6789999999999998    8999999999999999988  358999999999999    89999999999999998 


Q ss_pred             CCCHHHHHHHHHHHHHc
Q psy17691        249 PGFADAHSNLASIHKDS  265 (673)
Q Consensus       249 p~~~~a~~~La~~~~~~  265 (673)
                      ++++.++++||.+|...
T Consensus       159 ~~~~~a~~~Lg~~y~~g  175 (212)
T 3rjv_A          159 SRTGYAEYWAGMMFQQG  175 (212)
T ss_dssp             SCTTHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHcC
Confidence            77788999999999765

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.44  E-value=1e-12  Score=116.07  Aligned_cols=118  Identities=20%  Similarity=0.216  Sum_probs=106.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q psy17691        148 THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF-------ADA  220 (673)
Q Consensus       148 ~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~  220 (673)
                      +.+..++.+|.++...|++++|+.+|+++++.+|.+..+++++|.++...|++++|+.+|+++++..|++       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3467788999999999999999999999999999999999999999999999999999999999998877       889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        221 YSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG  266 (673)
Q Consensus       221 ~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g  266 (673)
                      +.++|.++..+|++++|+.+|+++++..| +...+..++.+....+
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998 5888888888776554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.44  E-value=6.2e-12  Score=131.05  Aligned_cols=164  Identities=15%  Similarity=0.060  Sum_probs=139.7

Q ss_pred             hhHHHHH--HHhcCCCChhHHHHHHHHHH-cCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--H
Q psy17691        102 KSRVEIF--CYALSPDDGTTFSYIISVLL-LIQ----------VSEAEECYNTALRLCPTHADSLNNLANIKREQGY--I  166 (673)
Q Consensus       102 ~~a~~~~--~~~l~p~~~~~~~~~~~~~~-~g~----------~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~--~  166 (673)
                      .++++..  .+.++|++..+|..-+.++. .+.          +++++.++++++..+|++..+|+..+.++...++  +
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~  126 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  126 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence            3445443  56788999999866655443 443          7899999999999999999999999999999984  8


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------
Q psy17691        167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGK-LTDALLHYKEAIRIQPSFADAYSNMGNTLKEM--------------  231 (673)
Q Consensus       167 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------  231 (673)
                      ++++.++.++++.+|.+..+|.+.+.++...|. ++++++++.++++.+|.+..+|++++.++...              
T Consensus       127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~  206 (331)
T 3dss_A          127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE  206 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccch
Confidence            999999999999999999999999999999998 69999999999999999999999999999887              


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        232 QDIQGALQCYSRAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       232 g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      +.++++++++.+++..+|++..+|+.+..++...
T Consensus       207 ~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~  240 (331)
T 3dss_A          207 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG  240 (331)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            5688999999999999999999998666555444

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.43  E-value=1.8e-12  Score=135.70  Aligned_cols=171  Identities=9%  Similarity=0.045  Sum_probs=155.0

Q ss_pred             CCChhHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17691        114 PDDGTTFSYIISVLLL-IQVSEAEECYNTALRLCPTHADSLNNLANIKREQG-YIEEATRLYLKALEVFPEFAAAHSNLA  191 (673)
Q Consensus       114 p~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la  191 (673)
                      ++...++.+....+.. +..++|+.++.+++.++|++..+|+..+.++...| .++++++.+++++..+|++..+|+..+
T Consensus        51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~  130 (349)
T 3q7a_A           51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL  130 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            3445566666666654 46689999999999999999999999999999999 599999999999999999999999999


Q ss_pred             HHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        192 SVLQQQ-G-KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ--------GALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       192 ~~~~~~-g-~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--------eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      .++... + +++++++++.++++.+|++..+|...+.++.+.|+++        +++++++++++.+|.|..+|.+.+.+
T Consensus       131 wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~l  210 (349)
T 3q7a_A          131 LLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYL  210 (349)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999998 8 9999999999999999999999999999999999888        99999999999999999999999999


Q ss_pred             HHHcCCC-------c---------cccCCCCHHHHHHHH
Q psy17691        262 HKDSGKR-------G---------FFIRTDLNSAYFWLL  284 (673)
Q Consensus       262 ~~~~g~~-------~---------l~l~p~~~~a~~~l~  284 (673)
                      +...++.       +         +.++|++.++++++.
T Consensus       211 L~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr  249 (349)
T 3q7a_A          211 RVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLR  249 (349)
T ss_dssp             HTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9998873       2         778999999997754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.43  E-value=5.1e-13  Score=114.69  Aligned_cols=106  Identities=15%  Similarity=0.135  Sum_probs=98.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q psy17691        146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS--FADAYSN  223 (673)
Q Consensus       146 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~  223 (673)
                      +|++..++..+|.++...|++++|+.+|+++++.+|.+..++.++|.++...|++++|++.|+++++.+|+  +..++.+
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            67888889999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q psy17691        224 MGNTLKEM-QDIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       224 lg~~~~~~-g~~~eA~~~~~~Al~l~p~~  251 (673)
                      +|.++..+ |++++|++++++++...|++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            99999999 99999999999999998875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.43  E-value=5.4e-13  Score=136.93  Aligned_cols=166  Identities=15%  Similarity=0.012  Sum_probs=123.9

Q ss_pred             CChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy17691        115 DDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV  193 (673)
Q Consensus       115 ~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  193 (673)
                      +....+ ..+..++..|++++|+..|+++++.+|+++.++.++|.+|..+|++++|+..++++++++|++..+++++|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            344444 4456667799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCC
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD-----SGKR  268 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~-----~g~~  268 (673)
                      +..+|++++|+..|+++++++|++...+........   +..++..+........+.+..+...++.++..     ...+
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~  158 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEEC  158 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998876432222222222   22333444444445667777776666665421     1222


Q ss_pred             c--cccCCCCHHHHHHH
Q psy17691        269 G--FFIRTDLNSAYFWL  283 (673)
Q Consensus       269 ~--l~l~p~~~~a~~~l  283 (673)
                      +  ++++|++......+
T Consensus       159 ~~al~~~p~~~~~~~~l  175 (281)
T 2c2l_A          159 QRNHEGHEDDGHIRAQQ  175 (281)
T ss_dssp             SGGGTTTSCHHHHTHHH
T ss_pred             HhhhccccchhhhhhHH
Confidence            2  66778766544333

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.43  E-value=5.1e-12  Score=130.08  Aligned_cols=149  Identities=11%  Similarity=-0.006  Sum_probs=129.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHA------DSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHS  188 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~  188 (673)
                      ..+..+...|++++|+..++++++..+...      ..++.+|.++...|++++|+.+++++++..+..      ..+++
T Consensus        80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 2qfc_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            445667789999999999999999987754      346778999999999999999999999876544      66899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHH
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAI---RIQPSFA----DAYSNMGNTLKEMQDIQGALQCYSRAIQINPG------FADAH  255 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al---~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~------~~~a~  255 (673)
                      ++|.+|..+|++++|+.+|++++   +..+++.    .+++++|.+|..+|++++|+.+|++++++.++      ...++
T Consensus       160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~  239 (293)
T 2qfc_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            99999999999999999999999   5566643    68999999999999999999999999988543      27889


Q ss_pred             HHHHHHHHHcCCCc
Q psy17691        256 SNLASIHKDSGKRG  269 (673)
Q Consensus       256 ~~La~~~~~~g~~~  269 (673)
                      +++|.++..+|+++
T Consensus       240 ~~lg~~y~~~g~~~  253 (293)
T 2qfc_A          240 YQRGECLRKLEYEE  253 (293)
T ss_dssp             HHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHcCCcH
Confidence            99999999999976

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.43  E-value=7.3e-12  Score=109.34  Aligned_cols=116  Identities=32%  Similarity=0.402  Sum_probs=107.9

Q ss_pred             hhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17691        117 GTTFS-YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ  195 (673)
Q Consensus       117 ~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  195 (673)
                      ...+. .+..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++.+|.+..++.++|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            44554 44556679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ  232 (673)
Q Consensus       196 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g  232 (673)
                      ..|++++|+..++++++.+|++..++.++|.++..+|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999988765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.43  E-value=1.8e-12  Score=125.12  Aligned_cols=125  Identities=15%  Similarity=0.060  Sum_probs=110.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHA----------------DSLNNLANIKREQGYIEEATRLYLKALEVFPEFA  184 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~  184 (673)
                      ..+..++..|++++|+.+|++++++.|+++                .++.++|.++..+|++++|+.+++++++++|++.
T Consensus        43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  122 (198)
T 2fbn_A           43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV  122 (198)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH
Confidence            445566789999999999999999999887                8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q psy17691        185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL-QCYSRAI  245 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~-~~~~~Al  245 (673)
                      .+++++|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++. ..|.+.+
T Consensus       123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          123 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999888877 4444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.43  E-value=4.6e-12  Score=130.39  Aligned_cols=124  Identities=21%  Similarity=0.240  Sum_probs=108.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHH
Q psy17691        125 SVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKAL---EVFPEFA----AAHSNLA  191 (673)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al---~~~p~~~----~~~~~la  191 (673)
                      .+...|++++|+.+|+++++..+..      ..+++++|.+|..+|++++|+.+|++++   +..|++.    .+++++|
T Consensus       124 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg  203 (293)
T 2qfc_A          124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA  203 (293)
T ss_dssp             HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHH
Confidence            3445789999999999999876544      6689999999999999999999999999   4566643    6899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q psy17691        192 SVLQQQGKLTDALLHYKEAIRIQPS------FADAYSNMGNTLKEMQDIQGA-LQCYSRAIQIN  248 (673)
Q Consensus       192 ~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~eA-~~~~~~Al~l~  248 (673)
                      .+|..+|++++|+.++++++++.++      ...+++++|.+|..+|++++| ..+|++|+.+.
T Consensus       204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999988543      278999999999999999999 88899998763

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.43  E-value=3.9e-13  Score=123.96  Aligned_cols=70  Identities=16%  Similarity=0.169  Sum_probs=50.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE----------EATRLYLKALEVFPEFAAAHSNLASVLQQQG  198 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~----------eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  198 (673)
                      .+++++|+..++++++++|+++++|+++|.++...++++          +|+..|+++++++|++..+|+++|.+|..+|
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            347899999999999999999999999999998888765          5555555555555555555555555555543

>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8

Probab=99.43  E-value=7.9e-13  Score=127.95  Aligned_cols=155  Identities=9%  Similarity=0.026  Sum_probs=124.1

Q ss_pred             ccccccCCCCCcEEEecCCc---ccccChhhHHHHHHHH--hcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhh
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQ---LYKIDPSTLQMWVNVL--KAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIV  538 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~---~~K~~~~~~~~~~~il--~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (673)
                      ..|+++|++.+. +++++++   ..|..+.++++|.++.  +..|+.+|+++|                           
T Consensus        26 ~~r~~~~~~~~~-~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G---------------------------   77 (200)
T 2bfw_A           26 SLLSKFGMDEGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIG---------------------------   77 (200)
T ss_dssp             HHHHHTTCCSCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEEC---------------------------
T ss_pred             HHHHHcCCCCCC-EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEEC---------------------------
Confidence            467889998765 5555565   4589999999999998  888999999988                           


Q ss_pred             hhccCchhhhhccCChh--hhhhHHHHHHHcCCCCCeEEe-ccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcC
Q psy17691        539 LKAVPNSILWLLKFPAV--GEANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTG  614 (673)
Q Consensus       539 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~rv~~-~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~G  614 (673)
                                    .+.  ..+.+++.+.+.|    +|+| .|.++.++....|+.+|+++-|. ..+.|++++|||++|
T Consensus        78 --------------~~~~~~~~~l~~~~~~~~----~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G  139 (200)
T 2bfw_A           78 --------------KGDPELEGWARSLEEKHG----NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLG  139 (200)
T ss_dssp             --------------CBCHHHHHHHHHHHHHCT----TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTT
T ss_pred             --------------CCChHHHHHHHHHHHhcC----CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCC
Confidence                          223  4567888888887    8999 99999999999999999998876 446699999999999


Q ss_pred             CceeecCCCcchhhhHHHHHHhcCCCccccC--CHHHHHHHHHHhcC-CHHHHHHHHhhh
Q psy17691        615 TPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT-DRDYCEKALLYH  671 (673)
Q Consensus       615 vPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~yv~~a~~la~-d~~~~~~~~~~~  671 (673)
                      +|||+-....+.     .++  -|-..++..  |.+++++...++.+ |++.+.+++...
T Consensus       140 ~PvI~~~~~~~~-----e~~--~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~a  192 (200)
T 2bfw_A          140 AIPIASAVGGLR-----DII--TNETGILVKAGDPGELANAILKALELSRSDLSKFRENC  192 (200)
T ss_dssp             CEEEEESCHHHH-----HHC--CTTTCEEECTTCHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             CCEEEeCCCChH-----HHc--CCCceEEecCCCHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999997542211     122  255556654  89999999999999 999999887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.42  E-value=1.4e-12  Score=147.06  Aligned_cols=162  Identities=12%  Similarity=0.013  Sum_probs=149.1

Q ss_pred             HHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17691        127 LLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGY----------IEEATRLYLKALEVFPEFAAAHSNLASVLQ  195 (673)
Q Consensus       127 ~~~g-~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~----------~~eA~~~~~~al~~~p~~~~~~~~la~~~~  195 (673)
                      ...| ..++|+..++++++.+|++..+|+..+.++...|+          +++|+++++++++.+|++..+|+..+.++.
T Consensus        39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~  118 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3444 45788999999999999999999999999999998          999999999999999999999999999999


Q ss_pred             HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC----
Q psy17691        196 QQG--KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ-DIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR----  268 (673)
Q Consensus       196 ~~g--~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~----  268 (673)
                      ..+  ++++|++++.++++.+|.+..+|...+.++...| .++++++++.++++.+|++..+|.+.+.++...++.    
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence            999  7799999999999999999999999999999999 999999999999999999999999999999886322    


Q ss_pred             ----------c---------cccCCCCHHHHHHHHHHhh
Q psy17691        269 ----------G---------FFIRTDLNSAYFWLLLLDA  288 (673)
Q Consensus       269 ----------~---------l~l~p~~~~a~~~l~~~~~  288 (673)
                                +         +.++|++..+|+.++.+..
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~  237 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG  237 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence                      1         6789999999998875543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.42  E-value=1.1e-12  Score=116.43  Aligned_cols=101  Identities=19%  Similarity=0.168  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691        119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG  198 (673)
Q Consensus       119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  198 (673)
                      .+..+..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..+++++|.++...|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            44566777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHH
Q psy17691        199 KLTDALLHYKEAIRIQPSFAD  219 (673)
Q Consensus       199 ~~~eA~~~~~~al~~~p~~~~  219 (673)
                      ++++|+..|+++++++|++..
T Consensus       100 ~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999998653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.42  E-value=1.9e-12  Score=133.36  Aligned_cols=122  Identities=20%  Similarity=0.231  Sum_probs=105.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHH
Q psy17691        126 VLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVF-------PEFAAAHSNLAS  192 (673)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~la~  192 (673)
                      +...+++++|+.+|+++++..+..      ..++.++|.+|..+|++++|+.+|+++++..       +....+++++|.
T Consensus       125 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~  204 (293)
T 3u3w_A          125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK  204 (293)
T ss_dssp             HTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             HHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence            344679999999999999975433      3479999999999999999999999999632       223568999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q psy17691        193 VLQQQGKLTDALLHYKEAIRIQPSF------ADAYSNMGNTLKEMQ-DIQGALQCYSRAIQI  247 (673)
Q Consensus       193 ~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~g-~~~eA~~~~~~Al~l  247 (673)
                      +|..+|++++|+.++++++++.+..      +.+++++|.+|..+| .+++|+++|++|+.+
T Consensus       205 ~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          205 ALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            9999999999999999999986443      789999999999999 579999999999976

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=2.6e-12  Score=124.71  Aligned_cols=124  Identities=15%  Similarity=0.097  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE  230 (673)
Q Consensus       151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  230 (673)
                      ..++++|.++...|++++|+..|++++  +| ++.+++++|.++...|++++|+..|+++++++|++..+++++|.++..
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            457889999999999999999999995  33 789999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCCc---------cccCCCCH
Q psy17691        231 MQDIQGALQCYSRAIQINPGFA----------------DAHSNLASIHKDSGKRG---------FFIRTDLN  277 (673)
Q Consensus       231 ~g~~~eA~~~~~~Al~l~p~~~----------------~a~~~La~~~~~~g~~~---------l~l~p~~~  277 (673)
                      +|++++|+.+|++++++.|++.                .+++++|.++...|+++         +.++|++.
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            9999999999999999888776                99999999999999987         55666553

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.41  E-value=6.2e-13  Score=122.87  Aligned_cols=108  Identities=17%  Similarity=0.090  Sum_probs=97.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh-------C
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPT-------HAD-----SLNNLANIKREQGYIEEATRLYLKALEV-------F  180 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----a~~~Lg~~~~~~g~~~eA~~~~~~al~~-------~  180 (673)
                      ...+..++..|++++|+.+|+++++++|+       +..     +|.++|.++..+|++++|+.+|++++++       +
T Consensus        15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~   94 (159)
T 2hr2_A           15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   94 (159)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence            35566777899999999999999999999       544     9999999999999999999999999999       9


Q ss_pred             CCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        181 PEFAAAH----SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT  227 (673)
Q Consensus       181 p~~~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  227 (673)
                      |++..+|    +++|.++..+|++++|+..|+++++++|++......+..+
T Consensus        95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            9999999    9999999999999999999999999999886655544443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.41  E-value=3e-12  Score=114.92  Aligned_cols=121  Identities=18%  Similarity=0.093  Sum_probs=107.3

Q ss_pred             CCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17691        113 SPDDGTTFS-YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA  191 (673)
Q Consensus       113 ~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  191 (673)
                      ++.....+. .+..++..|++++|+.+|+++++.+|++..++.++|.++..+|++++|+..++++++++|++..+++++|
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            455566664 4556677999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC
Q psy17691        192 SVLQQQGKLTDALLHYKEAIRIQPS-----FADAYSNMGNTLKEMQD  233 (673)
Q Consensus       192 ~~~~~~g~~~eA~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~  233 (673)
                      .++...|++++|+..|+++++++|+     +..+...+..+..+...
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988     67777777776655433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.41  E-value=7.4e-13  Score=122.07  Aligned_cols=101  Identities=18%  Similarity=0.212  Sum_probs=92.5

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        161 REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL----------TDALLHYKEAIRIQPSFADAYSNMGNTLKE  230 (673)
Q Consensus       161 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  230 (673)
                      .+.++|++|++.++++++++|+++++|+++|.++..++++          ++|+..|+++++++|++.++|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999998875          599999999999999999999999999998


Q ss_pred             cC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        231 MQ-----------DIQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       231 ~g-----------~~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      +|           ++++|+++|++|++++|++...+.++..+
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            85           89999999999999999998777766443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.41  E-value=3.4e-12  Score=114.33  Aligned_cols=104  Identities=21%  Similarity=0.199  Sum_probs=93.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-------AAAHSNLASV  193 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~la~~  193 (673)
                      ..+..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++       ..++.++|.+
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~   92 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNA   92 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            345667789999999999999999999999999999999999999999999999999998876       4589999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  225 (673)
                      +..+|++++|+++|+++++..|+ ++....+.
T Consensus        93 ~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           93 FQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            99999999999999999999886 55554443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.40  E-value=1.2e-12  Score=135.83  Aligned_cols=145  Identities=13%  Similarity=0.125  Sum_probs=126.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLA  191 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la  191 (673)
                      ..+...|++++|+.+|++++++.+..      ..++.++|.+|..+|++++|+.+|++++++.+..      ..++.++|
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  123 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG  123 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34556899999999999999986533      5689999999999999999999999999985432      56889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q psy17691        192 SVLQQQGKLTDALLHYKEAIRIQPSF------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF------ADAHSNLA  259 (673)
Q Consensus       192 ~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~La  259 (673)
                      .+|.. |++++|+.+|++++++.+..      ..++.++|.+|..+|++++|+.+|++++++.|++      ..++.+++
T Consensus       124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g  202 (307)
T 2ifu_A          124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV  202 (307)
T ss_dssp             HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            99998 99999999999999987654      5789999999999999999999999999986644      34788899


Q ss_pred             HHHHHcCCCc
Q psy17691        260 SIHKDSGKRG  269 (673)
Q Consensus       260 ~~~~~~g~~~  269 (673)
                      .++..+|+++
T Consensus       203 ~~~~~~g~~~  212 (307)
T 2ifu_A          203 LVQLHRADYV  212 (307)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHHHcCCHH
Confidence            9999999987

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.40  E-value=1.8e-12  Score=120.90  Aligned_cols=115  Identities=17%  Similarity=0.057  Sum_probs=104.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRL------------------CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE  182 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~  182 (673)
                      ..+..++..|++++|+..|++++++                  +|.+..++.++|.+|..+|++++|+..++++++++|+
T Consensus        16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~   95 (162)
T 3rkv_A           16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET   95 (162)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence            4566778899999999999999999                  7777889999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHH
Q psy17691        183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA-DAYSNMGNTLKEMQDIQ  235 (673)
Q Consensus       183 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~  235 (673)
                      +..+++++|.++..+|++++|+..|+++++++|++. .+...++.+....++..
T Consensus        96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A           96 NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998 67778888776654443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.40  E-value=3.6e-13  Score=149.01  Aligned_cols=126  Identities=17%  Similarity=0.175  Sum_probs=114.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691        126 VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALL  205 (673)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  205 (673)
                      ++..|++++|+.+|+++++++|++..++.++|.+|.++|++++|++.|+++++++|++..+++++|.+|..+|++++|++
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~   95 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR   95 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q psy17691        206 HYKEAIRIQPSFADAYSNMGNT--LKEMQDIQGALQCYS-----------RAIQINPGF  251 (673)
Q Consensus       206 ~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~eA~~~~~-----------~Al~l~p~~  251 (673)
                      .|+++++++|++..++.+++.+  +.++|++++|++.++           ++++++|++
T Consensus        96 ~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           96 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999999999999  889999999999999           777777654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.39  E-value=1e-11  Score=107.40  Aligned_cols=109  Identities=17%  Similarity=0.236  Sum_probs=103.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      ..+..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++.++|.++...|++
T Consensus         9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   88 (118)
T 1elw_A            9 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   88 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH
Confidence            44556677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        201 TDALLHYKEAIRIQPSFADAYSNMGNTLK  229 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~  229 (673)
                      ++|++.|+++++.+|++..++..++.+..
T Consensus        89 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           89 EEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999988753

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.39  E-value=2e-11  Score=129.48  Aligned_cols=212  Identities=16%  Similarity=0.032  Sum_probs=143.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchh
Q psy17691          1 LIDLAIDTYRRAIELQPNFP-----DAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRI   75 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~-----~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~   75 (673)
                      ++++|+..++++++..|.+.     .++..+|.++...|+++.+..++..+...........                  
T Consensus        29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------   90 (373)
T 1hz4_A           29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH------------------   90 (373)
T ss_dssp             CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH------------------
T ss_pred             CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH------------------
Confidence            47889999999999887653     2567778888888876666666555544432210000                  


Q ss_pred             hhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhC--------
Q psy17691         76 RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLC--------  146 (673)
Q Consensus        76 ~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~--------  146 (673)
                                                             ....++ ..+..+...|++++|+.+++++++..        
T Consensus        91 ---------------------------------------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           91 ---------------------------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             ---------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             ---------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence                                                   000111 23344556888888888888888864        


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-H
Q psy17691        147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS--F-A  218 (673)
Q Consensus       147 p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~-~  218 (673)
                      |....++.++|.++...|++++|..+++++++..+..     ..++.++|.++...|++++|...+++++++.+.  . .
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~  211 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS  211 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcch
Confidence            2345567778888888888888888888888877652     456778888888888888888888888876322  2 1


Q ss_pred             HHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCCc
Q psy17691        219 DAYS----NMGNTLKEMQDIQGALQCYSRAIQINPGF----ADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       219 ~~~~----~lg~~~~~~g~~~eA~~~~~~Al~l~p~~----~~a~~~La~~~~~~g~~~  269 (673)
                      ....    .++.++...|++++|..+++++++..+..    ...+.+++.++...|+++
T Consensus       212 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~  270 (373)
T 1hz4_A          212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE  270 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHH
Confidence            1111    34455778888888888888888766543    335677788888888765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.38  E-value=3.4e-12  Score=136.31  Aligned_cols=147  Identities=16%  Similarity=0.113  Sum_probs=125.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPT-------HADSLNNLANIKREQGYIEEATRLYLKALEVFPE------FAAAH  187 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~  187 (673)
                      ..+..+...|++++|+.++++++++.+.       ...++.++|.+|..+|++++|+++|++++++.+.      ...++
T Consensus       146 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  225 (378)
T 3q15_A          146 KVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL  225 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3345566799999999999999998543       2558899999999999999999999999997432      25689


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHH
Q psy17691        188 SNLASVLQQQGKLTDALLHYKEAIR-----IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP-----GFADAHSN  257 (673)
Q Consensus       188 ~~la~~~~~~g~~~eA~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p-----~~~~a~~~  257 (673)
                      .++|.++..+|++++|+.+|+++++     .+|....++.++|.++..+|++++|+.++++++++.+     .....+..
T Consensus       226 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  305 (378)
T 3q15_A          226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF  305 (378)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999     7788889999999999999999999999999999843     34455666


Q ss_pred             HHHHHHHcCC
Q psy17691        258 LASIHKDSGK  267 (673)
Q Consensus       258 La~~~~~~g~  267 (673)
                      ++.++...|+
T Consensus       306 l~~ly~~~~~  315 (378)
T 3q15_A          306 LQAVYKETVD  315 (378)
T ss_dssp             HHHHHSSSCC
T ss_pred             HHHHHhCCCc
Confidence            7777766665

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.37  E-value=1.3e-12  Score=114.94  Aligned_cols=91  Identities=18%  Similarity=0.145  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691        130 IQVSEAEECYNTALRL---CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH  206 (673)
Q Consensus       130 g~~~~A~~~~~~al~~---~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~  206 (673)
                      |++++|+.+|++++++   +|++..++.++|.+|..+|++++|+.+|+++++.+|+++.+++++|.++...|++++|+..
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   83 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL   83 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence            4444555555555554   3444444555555555555555555555555555555544555555555555555555555


Q ss_pred             HHHHHHhCCCCHHH
Q psy17691        207 YKEAIRIQPSFADA  220 (673)
Q Consensus       207 ~~~al~~~p~~~~~  220 (673)
                      |+++++..|+++..
T Consensus        84 ~~~al~~~p~~~~~   97 (117)
T 3k9i_A           84 LLKIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHHHCCCHHH
T ss_pred             HHHHHHhCCCcHHH
Confidence            55555444444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.35  E-value=7.2e-12  Score=128.95  Aligned_cols=146  Identities=12%  Similarity=-0.004  Sum_probs=124.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Q psy17691        123 IISVLLLIQVSEAEECYNTALRLCPTHAD------SLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNL  190 (673)
Q Consensus       123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l  190 (673)
                      +..++..|++++|+..++++++..+..+.      .+..+|.++...+++++|+.+|++++++.+..      ..++.++
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            45667799999999999999998877655      34468999999999999999999999975443      3479999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRIQ-------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF------ADAHSN  257 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~  257 (673)
                      |.+|..+|++++|+.+|+++++..       +....+++++|.+|..+|++++|+.++++++++.+..      ..++.+
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            999999999999999999999642       2234589999999999999999999999999986443      789999


Q ss_pred             HHHHHHHcCCC
Q psy17691        258 LASIHKDSGKR  268 (673)
Q Consensus       258 La~~~~~~g~~  268 (673)
                      +|.++..+|+.
T Consensus       242 lg~~~~~~g~~  252 (293)
T 3u3w_A          242 RGECLRKLEYE  252 (293)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHhCCc
Confidence            99999999963

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.35  E-value=3.6e-12  Score=136.18  Aligned_cols=119  Identities=19%  Similarity=0.225  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALE----------------VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI  213 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  213 (673)
                      +..+..+|..+...|++++|+..|+++++                .+|.+..+++++|.++..+|++++|+++|++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            34577778888888888888888888877                66677788888888888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       214 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      +|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.++...+++
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~  357 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  357 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888877766554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.35  E-value=1.1e-12  Score=115.37  Aligned_cols=107  Identities=15%  Similarity=0.098  Sum_probs=94.0

Q ss_pred             HcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        162 EQGYIEEATRLYLKALEV---FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL  238 (673)
Q Consensus       162 ~~g~~~eA~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~  238 (673)
                      .+|++++|+.+|++++++   +|++..+++++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   68889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        239 QCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       239 ~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      .+|+++++..|+++........+....+.+
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l  111 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAILFYADKL  111 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999998876665555544443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.35  E-value=3.2e-11  Score=106.90  Aligned_cols=114  Identities=15%  Similarity=0.116  Sum_probs=102.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHH
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPTHA---DSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASV  193 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~  193 (673)
                      +..+..++..|++++|+..|+++++.+|++.   .+++.+|.++..+|++++|+..|+++++.+|++   +.+++++|.+
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            4456677789999999999999999999998   899999999999999999999999999999999   8999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD  233 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  233 (673)
                      +..+|++++|+..|+++++..|++..+...+..+-...++
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            9999999999999999999999998877766665554443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.7e-11  Score=111.10  Aligned_cols=118  Identities=18%  Similarity=0.078  Sum_probs=107.3

Q ss_pred             CCCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy17691        113 SPDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS  188 (673)
Q Consensus       113 ~p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  188 (673)
                      .+.....+.. +..++..|++++|+.+|+++++.+|++   ..++.++|.++...|++++|+.+++++++.+|++..+++
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            4556666644 455667999999999999999999998   899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE  230 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  230 (673)
                      ++|.++...|++++|+.+|+++++++|++..++..++.+..+
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999988887644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.34  E-value=7.1e-11  Score=140.01  Aligned_cols=214  Identities=16%  Similarity=0.146  Sum_probs=160.8

Q ss_pred             CCCHHHHHHHHHHHHHcCC----------CCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCc--hhhhhhhhhhc
Q psy17691         17 PNFPDAYCNLANALKEKGQ----------PNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGN--RIRIGYVSSDF   84 (673)
Q Consensus        17 P~~~~a~~~Lg~~~~~~g~----------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~--~~~l~~~~~~l   84 (673)
                      .+.+.+|+.+|.++...|+          .++...+...+.++...|++++|++ ++..++...++.  ...++.++..+
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIe-yL~mArk~~~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVK-YLQMARKKARESYVETELIFALAKT 1180 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhcccccccHHHHHHHHhh
Confidence            4667788888888888876          4556677777778888888877775 444444433322  12344444444


Q ss_pred             CCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691         85 GNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG  164 (673)
Q Consensus        85 ~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g  164 (673)
                      ++..               .++.+  ...++....+..+..+...|+|++|+.+|+++        ..|..+|.+|.++|
T Consensus      1181 ~rle---------------ele~f--I~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A         1181 NRLA---------------ELEEF--INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLG 1235 (1630)
T ss_pred             cCHH---------------HHHHH--HhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhC
Confidence            3211               12222  13444455556666677899999999999996        47899999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA  244 (673)
Q Consensus       165 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~A  244 (673)
                      ++++|++++++|     .+..+|...+.++...|++..|..+... +..+   ++.+..++..|...|.+++|+.+++++
T Consensus      1236 e~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A         1236 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred             CHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999998     5678999999999999999999998874 4433   556679999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHc
Q psy17691        245 IQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       245 l~l~p~~~~a~~~La~~~~~~  265 (673)
                      +.+++.+...+..|+.++.+-
T Consensus      1307 L~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A         1307 LGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred             hccChhHhHHHHHHHHHHHhC
Confidence            999999999999999988764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.34  E-value=8.6e-13  Score=139.25  Aligned_cols=132  Identities=14%  Similarity=0.007  Sum_probs=73.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy17691        122 YIISVLLLIQVSEAEECYNTALRLCPTHA-----------------DSLNNLANIKREQGYIEEATRLYLKALEVFPEFA  184 (673)
Q Consensus       122 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~  184 (673)
                      .+..++..|++++|+.+|+++++..|++.                 .+++++|.+|..+|++++|+.+|+++++++|++.
T Consensus       185 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~  264 (338)
T 2if4_A          185 DGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP  264 (338)
T ss_dssp             HHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            33445568889999999999998888776                 3778888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT-LKEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                      .+++++|.+|..+|++++|+..|+++++++|++..++.+++.+ ....+..+++...|++++...|++..
T Consensus       265 ~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            8888888888888888888888888888888888888888877 34456677777888888887776543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.33  E-value=1.1e-11  Score=118.80  Aligned_cols=133  Identities=20%  Similarity=0.279  Sum_probs=109.2

Q ss_pred             hhHHHHH-HHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC----
Q psy17691        117 GTTFSYI-ISVLLLIQVSEAEECYNTALRL------CPTHADSLNNLANIKREQGYIEEATRLYLKALEV---FPE----  182 (673)
Q Consensus       117 ~~~~~~~-~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~---~p~----  182 (673)
                      ..++..+ ..+...|++++|+.++++++++      .+....++.++|.++..+|++++|+.++++++++   .++    
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  105 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA  105 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            3444333 4455688999999999999994      3445678999999999999999999999999998   443    


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP--SF----ADAYSNMGNTLKEMQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       183 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~----~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p  249 (673)
                      ...++.++|.++...|++++|+.++++++++.+  .+    ..++.++|.++..+|++++|+.++++++++..
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999997632  22    34578999999999999999999999998744

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.31  E-value=1.1e-12  Score=138.55  Aligned_cols=120  Identities=18%  Similarity=0.173  Sum_probs=96.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691        146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA-----------------AAHSNLASVLQQQGKLTDALLHYK  208 (673)
Q Consensus       146 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~eA~~~~~  208 (673)
                      .++.+..+..+|..++..|++++|+.+|++++++.|++.                 .+++++|.++..+|++++|+.+|+
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344567899999999999999999999999999999877                 489999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       209 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      ++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++.+|+.+....
T Consensus       255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~  311 (338)
T 2if4_A          255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE  311 (338)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999885544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.31  E-value=5.2e-12  Score=135.38  Aligned_cols=223  Identities=16%  Similarity=0.139  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC----------cHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCC
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPN----------FPDAYCNLANALKEKGQINVLHKPPYKYTRELAP   71 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~----------~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p   71 (673)
                      +++|.+.+++.     +++.+|..||.++...|+.+          +...+...+..+...|++++|.. +++..++..+
T Consensus        19 ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~-yl~~ark~~~   92 (449)
T 1b89_A           19 LDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVK-YLQMARKKAR   92 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHhCc
Confidence            56778888776     44579999999999999743          34467777888888899999887 5555554322


Q ss_pred             Cc--hhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691         72 GN--RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPT  148 (673)
Q Consensus        72 ~~--~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~  148 (673)
                      +.  ...+..++..+|+........                 ..|+.. .| ..+..++..|+|++|..+|.++      
T Consensus        93 ~~~i~~~Li~~Y~Klg~l~e~e~f~-----------------~~pn~~-a~~~IGd~~~~~g~yeeA~~~Y~~a------  148 (449)
T 1b89_A           93 ESYVETELIFALAKTNRLAELEEFI-----------------NGPNNA-HIQQVGDRCYDEKMYDAAKLLYNNV------  148 (449)
T ss_dssp             ----------------CHHHHTTTT-----------------TCC-----------------CTTTHHHHHHHT------
T ss_pred             cchhHHHHHHHHHHhCCHHHHHHHH-----------------cCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence            22  234455555555433322111                 124333 55 4455667799999999999987      


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL  228 (673)
Q Consensus       149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  228 (673)
                        ..|..+|.++.++|++++|++.++++     +++.+|.....++...|+++.|..+..+ +..   +++-...+..+|
T Consensus       149 --~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Y  217 (449)
T 1b89_A          149 --SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYY  217 (449)
T ss_dssp             --TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHH
T ss_pred             --hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHH
Confidence              47889999999999999999999999     5789999999999999999999887775 223   444566788999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       229 ~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      .+.|++++|+.++++++.+++.+..++..|+.+|.+-
T Consensus       218 ek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          218 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999988654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.30  E-value=1.2e-12  Score=144.83  Aligned_cols=120  Identities=19%  Similarity=0.186  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK  229 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~  229 (673)
                      +.++..+|.++.++|++++|++.|+++++++|++..+++++|.++..+|++++|++.|+++++++|+++.+++++|.+|.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCCc
Q psy17691        230 EMQDIQGALQCYSRAIQINPGFADAHSNLASI--HKDSGKRG  269 (673)
Q Consensus       230 ~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~--~~~~g~~~  269 (673)
                      .+|++++|+++|+++++++|++..++.+++.+  +...|+++
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~  127 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE  127 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988  77767665

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.30  E-value=1.3e-11  Score=126.55  Aligned_cols=105  Identities=20%  Similarity=0.143  Sum_probs=102.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN  226 (673)
Q Consensus       147 p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~  226 (673)
                      |.++..+..+|..+...|++++|+..|+++++.+|++..+++++|.++..+|++++|+..|+++++++|++..+++++|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        227 TLKEMQDIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       227 ~~~~~g~~~eA~~~~~~Al~l~p~~  251 (673)
                      +|..+|++++|+.+|+++++++|++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999866

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.30  E-value=1.7e-11  Score=130.87  Aligned_cols=120  Identities=19%  Similarity=0.129  Sum_probs=112.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALR----------------LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA  184 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~  184 (673)
                      ..+..++..|++++|+.+|+++++                .+|.+..++.++|.+|..+|++++|+.+++++++++|++.
T Consensus       228 ~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~  307 (370)
T 1ihg_A          228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT  307 (370)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH
Confidence            445567789999999999999999                7788889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691        185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC  240 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~  240 (673)
                      .+++++|.+|..+|++++|++.|+++++++|++..++..++.++..+++++++...
T Consensus       308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          308 KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888654

>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*

Probab=99.30  E-value=1.4e-11  Score=134.06  Aligned_cols=162  Identities=20%  Similarity=0.189  Sum_probs=127.2

Q ss_pred             cccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhccc--CeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhh
Q psy17691        465 SRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVP--NSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLK  540 (673)
Q Consensus       465 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (673)
                      .|+++|++.+.+++++++++.  |..+.++++|.++.++.|  +.+|+++|.+.                          
T Consensus       233 ~r~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~--------------------------  286 (438)
T 3c48_A          233 SRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPS--------------------------  286 (438)
T ss_dssp             HHHHTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC--------------------------
T ss_pred             hHHhcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCC--------------------------
Confidence            678899998888888888764  888999999999999988  78999988100                          


Q ss_pred             ccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceee
Q psy17691        541 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVT  619 (673)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt  619 (673)
                                 .++...+.+++.+.+.|+. ++|.|.|.++.++....|+.+|+++-|. .++.|++.+|||++|+|||+
T Consensus       287 -----------~~g~~~~~l~~~~~~~~l~-~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~  354 (438)
T 3c48_A          287 -----------GPNATPDTYRHMAEELGVE-KRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIA  354 (438)
T ss_dssp             -----------------CHHHHHHHHTTCT-TTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEE
T ss_pred             -----------CCCcHHHHHHHHHHHcCCC-CcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEe
Confidence                       0134467788899999994 8999999999999999999999997765 56779999999999999999


Q ss_pred             cCCCcchhhhHHHHHHhcCCCccccC--CHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        620 LPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       620 ~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      -....+..     ++. -|-..++..  |.+++.+...++.+|++.+.+++..
T Consensus       355 ~~~~~~~e-----~i~-~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~  401 (438)
T 3c48_A          355 ARVGGLPI-----AVA-EGETGLLVDGHSPHAWADALATLLDDDETRIRMGED  401 (438)
T ss_dssp             ESCTTHHH-----HSC-BTTTEEEESSCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             cCCCChhH-----Hhh-CCCcEEECCCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            76543322     121 233455554  8999999999999999998887654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.30  E-value=2.4e-10  Score=135.48  Aligned_cols=249  Identities=16%  Similarity=0.125  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCCCcHHHHHH---------HHHHHHHcCChhhhcCChhhHHhh
Q psy17691          2 IDLAIDTYRRAIELQPN----FPDAYCNLANALKEKGQPNFPDAYCN---------LANALKEKGQINVLHKPPYKYTRE   68 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~----~~~a~~~Lg~~~~~~g~~~~a~a~~~---------la~~l~~~g~~~~A~~~~~~~~~~   68 (673)
                      +.+|++.|++++ ++|.    +...-..+..+..+. ++.....+..         .|..+...|.+++|.. .|++.. 
T Consensus      1001 p~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~-IYkKa~- 1076 (1630)
T 1xi4_A         1001 PNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIANIAISNELFEEAFA-IFRKFD- 1076 (1630)
T ss_pred             HHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHH-HHHHcC-
Confidence            679999999999 5555    333333344443333 2233333333         4899999999999875 333321 


Q ss_pred             cCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691         69 LAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCP  147 (673)
Q Consensus        69 l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p  147 (673)
                         .....+...+..+++              ...+.+.   ....+.+.+|... ..+...|++++|+.+|.++     
T Consensus      1077 ---~~~~A~~VLie~i~n--------------ldrAiE~---Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A         1077 ---VNTSAVQVLIEHIGN--------------LDRAYEF---AERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred             ---CHHHHHHHHHHHHhh--------------HHHHHHH---HHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence               111111222222222              1222222   1234567777555 4555689999999999886     


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------------------CHHHHHHHHHHHHHcCCH
Q psy17691        148 THADSLNNLANIKREQGYIEEATRLYLKALEVFPE---------------------------FAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       148 ~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~---------------------------~~~~~~~la~~~~~~g~~  200 (673)
                      +++..+..+|.++.+.|++++|+++|+.+.+..++                           +...+.++|..+...|+|
T Consensus      1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A         1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH
Confidence            88899999999999999999999999887765533                           234567799999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------------CCHHHH
Q psy17691        201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP-------------------------GFADAH  255 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p-------------------------~~~~a~  255 (673)
                      ++|+.+|+++        ..|..+|.+|.++|++++|++++++|....+                         .+++.+
T Consensus      1212 eeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deL 1283 (1630)
T 1xi4_A         1212 DAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL 1283 (1630)
T ss_pred             HHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHH
Confidence            9999999986        4789999999999999999999999843322                         122333


Q ss_pred             HHHHHHHHHcCCCc---------cccCCCCHHHHHHHHHHh
Q psy17691        256 SNLASIHKDSGKRG---------FFIRTDLNSAYFWLLLLD  287 (673)
Q Consensus       256 ~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~~~  287 (673)
                      ..++..|...|.++         +.+++.+...+..++++.
T Consensus      1284 eeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A         1284 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence            34455556666664         556666666665555443

>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*

Probab=99.29  E-value=8.6e-12  Score=133.47  Aligned_cols=157  Identities=15%  Similarity=0.141  Sum_probs=127.7

Q ss_pred             cccccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhh
Q psy17691        463 ITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLK  540 (673)
Q Consensus       463 ~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (673)
                      ...|+.+|++.+.+++++++++  .|..+.+++++.++.+..|+.+|+++|                             
T Consensus       186 ~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G-----------------------------  236 (394)
T 3okp_A          186 SATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVG-----------------------------  236 (394)
T ss_dssp             HHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEEC-----------------------------
T ss_pred             HHHHHhcCCCcCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEc-----------------------------
Confidence            3567889999998888888876  588999999999999999999999988                             


Q ss_pred             ccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC--------CCCcchhhhhhh
Q psy17691        541 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL--------CNGHTTSMDVLW  612 (673)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p--------~~g~~t~~eal~  612 (673)
                                  ++...+.+++.+  .|+ .++|+|.|.++.++....|..+|+++-|..        ++.|++.+|||+
T Consensus       237 ------------~g~~~~~l~~~~--~~~-~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a  301 (394)
T 3okp_A          237 ------------SGRYESTLRRLA--TDV-SQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQA  301 (394)
T ss_dssp             ------------CCTTHHHHHHHT--GGG-GGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHH
T ss_pred             ------------CchHHHHHHHHH--hcc-cCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHH
Confidence                        344455666655  666 389999999999999999999999987664        677999999999


Q ss_pred             cCCceeecCCCcchhhhHHHHHHhcCCCccccC--CHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        613 TGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       613 ~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      +|+|||+-.......-+      .-| ..++..  |.+++++...++.+|++.+.+++..
T Consensus       302 ~G~PvI~~~~~~~~e~i------~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~  354 (394)
T 3okp_A          302 CGVPVIAGTSGGAPETV------TPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAA  354 (394)
T ss_dssp             TTCCEEECSSTTGGGGC------CTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCCCEEEeCCCChHHHH------hcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            99999997654443311      124 556655  8999999999999999999888764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.28  E-value=2.6e-11  Score=103.83  Aligned_cols=105  Identities=14%  Similarity=0.072  Sum_probs=96.5

Q ss_pred             CCCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q psy17691        113 SPDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE--FAAAHSN  189 (673)
Q Consensus       113 ~p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~  189 (673)
                      +|++...+.. +..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++.+|.  +..++.+
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            4666666644 455567999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q psy17691        190 LASVLQQQ-GKLTDALLHYKEAIRIQPSF  217 (673)
Q Consensus       190 la~~~~~~-g~~~eA~~~~~~al~~~p~~  217 (673)
                      +|.++... |++++|+++++++++..|.+
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            99999999 99999999999999999875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.28  E-value=3e-11  Score=106.50  Aligned_cols=111  Identities=22%  Similarity=0.209  Sum_probs=101.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-------AAAHSNLASV  193 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~la~~  193 (673)
                      ..+..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++..|.+       ..+++++|.+
T Consensus         9 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~   88 (131)
T 1elr_A            9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Confidence            344556679999999999999999999999999999999999999999999999999998877       8999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ  232 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g  232 (673)
                      +...|++++|+++|+++++..| +...+..++.+....+
T Consensus        89 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           89 YFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            9999999999999999999999 5888888888876544

>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*

Probab=99.28  E-value=1e-11  Score=134.45  Aligned_cols=164  Identities=14%  Similarity=0.158  Sum_probs=126.5

Q ss_pred             ccccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA  541 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (673)
                      ..|+++|++.+.+++++++++  .|..+.++++|..+.+..|+.+|+++|..   .  .                     
T Consensus       220 ~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g---~--~---------------------  273 (416)
T 2x6q_A          220 RILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVM---A--H---------------------  273 (416)
T ss_dssp             HHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECC---C--T---------------------
T ss_pred             HHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecC---c--c---------------------
Confidence            467889999888888888866  48889999999999999999999998810   0  0                     


Q ss_pred             cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcC---hHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCce
Q psy17691        542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA---KEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPV  617 (673)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~---~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPv  617 (673)
                                ......+.+++..+..|+. ++|.|+|..+   .++....|..+|+++-|. .++.|++.+|||++|+||
T Consensus       274 ----------~~~~~~~~l~~~~~~~~~~-~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~Pv  342 (416)
T 2x6q_A          274 ----------DDPEGWIYFEKTLRKIGED-YDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPV  342 (416)
T ss_dssp             ----------TCHHHHHHHHHHHHHHTTC-TTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCE
T ss_pred             ----------cchhHHHHHHHHHHHhCCC-CcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCE
Confidence                      0011245677888889984 8999999654   678999999999997654 667899999999999999


Q ss_pred             eecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        618 VTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       618 vt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      |+-......     .++ .-|-..++..|.+++.+...++.+|++.+++++..
T Consensus       343 I~~~~~g~~-----e~i-~~~~~g~l~~d~~~la~~i~~ll~~~~~~~~~~~~  389 (416)
T 2x6q_A          343 IGRAVGGIK-----FQI-VDGETGFLVRDANEAVEVVLYLLKHPEVSKEMGAK  389 (416)
T ss_dssp             EEESCHHHH-----HHC-CBTTTEEEESSHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             EEccCCCCh-----hhe-ecCCCeEEECCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            996542111     111 12456677779999999999999999998887654

>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*

Probab=99.27  E-value=1.5e-11  Score=132.98  Aligned_cols=165  Identities=13%  Similarity=0.035  Sum_probs=126.3

Q ss_pred             ccccccCCCC--CcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691        464 TSRQQYGLPE--DAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL  539 (673)
Q Consensus       464 ~~r~~~~l~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (673)
                      ..|+++|++.  +.++|++++++  .|..+.++++|.++.+..|+.+|+++|.....                       
T Consensus       171 ~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~-----------------------  227 (413)
T 3oy2_A          171 DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHE-----------------------  227 (413)
T ss_dssp             THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTT-----------------------
T ss_pred             HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCccc-----------------------
Confidence            4567789988  88999999986  69999999999999999999999998811000                       


Q ss_pred             hccCchhhhhccCChhhhhhHHHHHHHcCCCCCe-------EEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhh
Q psy17691        540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHR-------ILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVL  611 (673)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~r-------v~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal  611 (673)
                                  ....-++.+++.+++.|++ ++       |.|.|.++.++....|+.+|+++-|. .++.|++.+|||
T Consensus       228 ------------~~~~l~~~~~~~~~~~~l~-~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAm  294 (413)
T 3oy2_A          228 ------------SKFDLHSIALRELVASGVD-NVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGA  294 (413)
T ss_dssp             ------------CSCCHHHHHHHHHHHHTCS-CHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHH
T ss_pred             ------------chhhHHHHHHHHHHHcCcc-cccccccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHH
Confidence                        0001136788888889995 66       88889999999999999999997654 668899999999


Q ss_pred             hcCCceeecCCCcchhhhHHHHHHh-c----------------CCCcccc-CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        612 WTGTPVVTLPGETLASRVAASQLAT-L----------------GCPELIA-RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       612 ~~GvPvvt~~g~~~~~r~~~~~l~~-~----------------gl~~~ia-~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      ++|+|||+-....+..     ++.. .                |+..++. .|.+++.+.. ++..|++.+++++..
T Consensus       295 a~G~PvI~s~~~g~~e-----~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~~~~~~~~~~  365 (413)
T 3oy2_A          295 VLGKPLIISAVGGADD-----YFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRKEYGKR  365 (413)
T ss_dssp             TTTCCEEEECCHHHHH-----HSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSHHHHHHHHHH
T ss_pred             HcCCCEEEcCCCChHH-----HHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            9999999855422111     1111 0                3322443 5899999999 999999999887654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.27  E-value=8.7e-11  Score=124.61  Aligned_cols=214  Identities=9%  Similarity=0.051  Sum_probs=152.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCch
Q psy17691          1 LIDLAIDTYRRAIELQPNFP------DAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNR   74 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~------~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~   74 (673)
                      ++++|+..+++++++.|...      .++.++|.++..+|+++.+..++..+..........                  
T Consensus        68 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~------------------  129 (373)
T 1hz4_A           68 ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE------------------  129 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT------------------
T ss_pred             cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc------------------
Confidence            47889999999998765432      235666677766666555555554444332110000                  


Q ss_pred             hhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q psy17691         75 IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFS-YIISVLLLIQVSEAEECYNTALRLCPT-----  148 (673)
Q Consensus        75 ~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~-----  148 (673)
                                                           ..|.....+. .+..++..|++++|+.+++++++..+.     
T Consensus       130 -------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  172 (373)
T 1hz4_A          130 -------------------------------------QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  172 (373)
T ss_dssp             -------------------------------------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             -------------------------------------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence                                                 0011222333 445567799999999999999998775     


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C-HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q psy17691        149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPE--F-AAAHS----NLASVLQQQGKLTDALLHYKEAIRIQPSF----  217 (673)
Q Consensus       149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~-~~~~~----~la~~~~~~g~~~eA~~~~~~al~~~p~~----  217 (673)
                      ...++..+|.++...|++++|..++++++++.+.  . .....    .++.++...|++++|...++++++..+..    
T Consensus       173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  252 (373)
T 1hz4_A          173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL  252 (373)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence            3567889999999999999999999999987432  2 12111    34556889999999999999998877653    


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCCc
Q psy17691        218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG------FADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       218 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~------~~~a~~~La~~~~~~g~~~  269 (673)
                      ...+..+|.++...|++++|...+++++...+.      ...++..++.++...|+++
T Consensus       253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  310 (373)
T 1hz4_A          253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS  310 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence            346788999999999999999999999887442      2257788899999998865

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.27  E-value=1.4e-11  Score=118.17  Aligned_cols=143  Identities=15%  Similarity=0.068  Sum_probs=118.0

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCH
Q psy17691        127 LLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV------FPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       127 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~  200 (673)
                      +..|++++|+..++......+....++..+|.++...|++++|+.++++++++      .+....++.++|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45789999999666555433367889999999999999999999999999994      344578899999999999999


Q ss_pred             HHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCC
Q psy17691        201 TDALLHYKEAIRI---QPSF----ADAYSNMGNTLKEMQDIQGALQCYSRAIQINP--GF----ADAHSNLASIHKDSGK  267 (673)
Q Consensus       201 ~eA~~~~~~al~~---~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p--~~----~~a~~~La~~~~~~g~  267 (673)
                      ++|+.++++++++   .+++    ..++.++|.++..+|++++|+.++++++++.+  ++    ..++.++|.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            9999999999998   4433    56799999999999999999999999997632  22    2356899999999998


Q ss_pred             Cc
Q psy17691        268 RG  269 (673)
Q Consensus       268 ~~  269 (673)
                      ++
T Consensus       163 ~~  164 (203)
T 3gw4_A          163 LL  164 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.27  E-value=2.8e-11  Score=110.48  Aligned_cols=130  Identities=17%  Similarity=0.140  Sum_probs=111.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHS  188 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~  188 (673)
                      ..+..+...|++++|+.+++++++..+..      ..++..+|.++..+|++++|+.++++++++.+..      ..++.
T Consensus        14 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   93 (164)
T 3ro3_A           14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY   93 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            33455667999999999999999986542      2589999999999999999999999999986543      67899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAIRIQPS------FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG  250 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~  250 (673)
                      ++|.++...|++++|++++++++++.+.      ...++.++|.++..+|++++|++++++++++...
T Consensus        94 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987432      2568899999999999999999999999987544

>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8

Probab=99.23  E-value=1.2e-11  Score=117.48  Aligned_cols=152  Identities=11%  Similarity=0.080  Sum_probs=114.3

Q ss_pred             cCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchh
Q psy17691        469 YGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSI  546 (673)
Q Consensus       469 ~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (673)
                      +.++.+..+|++++++  .|..+.+++++.++    |+.+|+++|                                   
T Consensus        17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G-----------------------------------   57 (177)
T 2f9f_A           17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVG-----------------------------------   57 (177)
T ss_dssp             CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEB-----------------------------------
T ss_pred             cccCCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEe-----------------------------------
Confidence            4566666666666665  47777777777664    889999988                                   


Q ss_pred             hhhccCChhhhhhHHHHHH--HcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeecCCC
Q psy17691        547 LWLLKFPAVGEANIQATAQ--ALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTLPGE  623 (673)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~--~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~~g~  623 (673)
                            .+...+.+++.+.  ..|+ .++|.|.|.++.++....|+.+|+++-| ...+.|++.+|||++|+|||+-...
T Consensus        58 ------~~~~~~~l~~~~~~~~~~l-~~~v~~~g~~~~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~  130 (177)
T 2f9f_A           58 ------WFSKGDHAERYARKIMKIA-PDNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEG  130 (177)
T ss_dssp             ------CCCTTSTHHHHHHHHHHHS-CTTEEEEESCCHHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSH
T ss_pred             ------cCccHHHHHHHHHhhhccc-CCcEEEeCCCCHHHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCC
Confidence                  2223356777777  7888 4899999999999999999999999874 4667899999999999999996542


Q ss_pred             cchhhhHHHHHHhcCCCccc-cCCHHHHHHHHHHhcCCHHH-HHHHHhhhc
Q psy17691        624 TLASRVAASQLATLGCPELI-ARTHKEYQDIAIRLGTDRDY-CEKALLYHE  672 (673)
Q Consensus       624 ~~~~r~~~~~l~~~gl~~~i-a~~~~~yv~~a~~la~d~~~-~~~~~~~~~  672 (673)
                      .+..     ++. -|-..++ ..|.+++++...++.+|++. ++++|...+
T Consensus       131 ~~~e-----~i~-~~~~g~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~a~  175 (177)
T 2f9f_A          131 GFKE-----TVI-NEKTGYLVNADVNEIIDAMKKVSKNPDKFKKDCFRRAK  175 (177)
T ss_dssp             HHHH-----HCC-BTTTEEEECSCHHHHHHHHHHHHHCTTTTHHHHHHHHH
T ss_pred             CHHH-----Hhc-CCCccEEeCCCHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence            2111     111 1334444 58999999999999999887 778877654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.22  E-value=3.6e-12  Score=129.32  Aligned_cols=180  Identities=12%  Similarity=0.031  Sum_probs=150.9

Q ss_pred             hhHHHHH--HHhcCCCChhHHHHH--------HHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------------
Q psy17691        102 KSRVEIF--CYALSPDDGTTFSYI--------ISVLLLIQVSEAEECYNTALRLCPTHAD--------------------  151 (673)
Q Consensus       102 ~~a~~~~--~~~l~p~~~~~~~~~--------~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------------  151 (673)
                      ..+...+  ...++|+...+|...        ..+...++..+++..+++++++.|....                    
T Consensus        23 ~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~  102 (282)
T 4f3v_A           23 ARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPL  102 (282)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHH
T ss_pred             HHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHh
Confidence            3444554  557899999999654        5566788889999999999998776543                    


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q psy17691        152 -SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF--ADAYSNMGNTL  228 (673)
Q Consensus       152 -a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~  228 (673)
                       +...++.++...|++++|.+.|+..+...|++. .++.+|.++++.+++++|+.+|+++.+..++.  ..+++++|.++
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence             445588999999999999999999999999988 99999999999999999999999887653221  45899999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHH
Q psy17691        229 KEMQDIQGALQCYSRAIQIN--PG-FADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWL  283 (673)
Q Consensus       229 ~~~g~~~eA~~~~~~Al~l~--p~-~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l  283 (673)
                      ..+|++++|+.+|++++.-.  |. ..++++++|.++.++|+.+         +..+|+ +.+...|
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            99999999999999998654  65 6689999999999999988         678898 7766554

>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*

Probab=99.19  E-value=4.7e-11  Score=129.55  Aligned_cols=180  Identities=10%  Similarity=0.049  Sum_probs=134.8

Q ss_pred             eeccCccccccccccccCcccCcccccccccccCCCCCcEEEecCCccc---ccChhhHHHHHHHHhcc--cCeeEEeec
Q psy17691        437 VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLY---KIDPSTLQMWVNVLKAV--PNSILWLLK  511 (673)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~---K~~~~~~~~~~~il~~~--p~~~l~~~~  511 (673)
                      ++.||+....+.+.....  .+.......|+++|++.+ +++++++++.   |..+.+++++.++.+..  |+.+|+++|
T Consensus       216 vi~ngvd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G  292 (439)
T 3fro_A          216 YVFNGIDCSFWNESYLTG--SRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIG  292 (439)
T ss_dssp             ECCCCCCTTTSCGGGSCS--CHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEEC
T ss_pred             ecCCCCCchhcCcccccc--hhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEc
Confidence            467787665543331100  011122356788999988 8888888654   88899999999999887  999999998


Q ss_pred             cCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhh--hhHHHHHHHcCCCCCeEEeccCcChHHHHHhc
Q psy17691        512 FPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGE--ANIQATAQALGLDQHRILFSNVAAKEEHVRRG  589 (673)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~  589 (673)
                                                               ++...  +.+++..++.|   ++++|.|..+.++....|
T Consensus       293 -----------------------------------------~g~~~~~~~l~~~~~~~~---~~~~~~g~~~~~~~~~~~  328 (439)
T 3fro_A          293 -----------------------------------------KGDPELEGWARSLEEKHG---NVKVITEMLSREFVRELY  328 (439)
T ss_dssp             -----------------------------------------CCCHHHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHH
T ss_pred             -----------------------------------------CCChhHHHHHHHHHhhcC---CEEEEcCCCCHHHHHHHH
Confidence                                                     23333  77888888888   788999999999999999


Q ss_pred             ccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccC--CHHHHHHHHHHhcC-CHHHHH
Q psy17691        590 QLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT-DRDYCE  665 (673)
Q Consensus       590 ~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~yv~~a~~la~-d~~~~~  665 (673)
                      ..+|+++-|. .++-|++.+|||++|+|||+-....+..     ++. -| ..++..  |.+++.+...++.. |++.++
T Consensus       329 ~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e-----~~~-~~-~g~~~~~~d~~~la~~i~~ll~~~~~~~~  401 (439)
T 3fro_A          329 GSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRD-----IIT-NE-TGILVKAGDPGELANAILKALELSRSDLS  401 (439)
T ss_dssp             TTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHH-----HCC-TT-TCEEECTTCHHHHHHHHHHHHHHTTTTTH
T ss_pred             HHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcce-----eEE-cC-ceEEeCCCCHHHHHHHHHHHHhcCHHHHH
Confidence            9999997765 5577999999999999999965532222     221 24 555554  89999999999998 888888


Q ss_pred             HHHhh
Q psy17691        666 KALLY  670 (673)
Q Consensus       666 ~~~~~  670 (673)
                      +++..
T Consensus       402 ~~~~~  406 (439)
T 3fro_A          402 KFREN  406 (439)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*

Probab=99.19  E-value=3.3e-11  Score=129.40  Aligned_cols=156  Identities=14%  Similarity=0.190  Sum_probs=119.8

Q ss_pred             ccccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA  541 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (673)
                      ..|+++|++.+.+++++++++  .|..+.++++|.++.+. ++.+|+++|                              
T Consensus       200 ~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G------------------------------  248 (394)
T 2jjm_A          200 QLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVG------------------------------  248 (394)
T ss_dssp             HHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEEC------------------------------
T ss_pred             HHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCEEEEEC------------------------------
Confidence            456788998887788888865  48889999999999877 678999888                              


Q ss_pred             cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeec
Q psy17691        542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTL  620 (673)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~  620 (673)
                                 ++...+.+++.+.+.|+ .++|.|.|.  .++....|..+|+++-|. .++.|++++|||++|+|||+-
T Consensus       249 -----------~g~~~~~l~~~~~~~~l-~~~v~~~g~--~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~  314 (394)
T 2jjm_A          249 -----------DGPEFCTILQLVKNLHI-EDRVLFLGK--QDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGT  314 (394)
T ss_dssp             -----------CCTTHHHHHHHHHTTTC-GGGBCCCBS--CSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEE
T ss_pred             -----------CchHHHHHHHHHHHcCC-CCeEEEeCc--hhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEe
Confidence                       34456778888999998 489999995  467778888999997765 567799999999999999987


Q ss_pred             CCCcchhhhHHHHHHhcCCCccccC--CHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        621 PGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       621 ~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      .......     ++ .-|-..++..  |.+++++...++.+|++.+.+++..
T Consensus       315 ~~~~~~e-----~v-~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~  360 (394)
T 2jjm_A          315 RVGGIPE-----VI-QHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGER  360 (394)
T ss_dssp             CCTTSTT-----TC-CBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             cCCChHH-----Hh-hcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            6543322     11 1133445554  8999999999999999998887654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.16  E-value=1.7e-10  Score=100.55  Aligned_cols=81  Identities=19%  Similarity=0.144  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691        135 AEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ  214 (673)
Q Consensus       135 A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  214 (673)
                      |+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++..+++++|.++...|++++|+..|++++++.
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555444


Q ss_pred             C
Q psy17691        215 P  215 (673)
Q Consensus       215 p  215 (673)
                      |
T Consensus        84 ~   84 (115)
T 2kat_A           84 Q   84 (115)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*

Probab=99.16  E-value=4.9e-11  Score=126.69  Aligned_cols=157  Identities=14%  Similarity=0.151  Sum_probs=123.3

Q ss_pred             ccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhc-ccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhh
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKA-VPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLK  540 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (673)
                      ..|+++|++.+.+++++++++.  |..+.+++++.++.+. .|+.+|+++|                             
T Consensus       185 ~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G-----------------------------  235 (374)
T 2iw1_A          185 IYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVG-----------------------------  235 (374)
T ss_dssp             HHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEES-----------------------------
T ss_pred             HHHHHhCCCCCCeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEc-----------------------------
Confidence            4678899999888888888664  7888889999988777 5899999988                             


Q ss_pred             ccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceee
Q psy17691        541 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVT  619 (673)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt  619 (673)
                                  ++. .+.+++.+.+.|+ .++|.|+|.  .++....|..+|+++-|. .++.|++++|||++|+|||+
T Consensus       236 ------------~g~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~  299 (374)
T 2iw1_A          236 ------------QDK-PRKFEALAEKLGV-RSNVHFFSG--RNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLT  299 (374)
T ss_dssp             ------------SSC-CHHHHHHHHHHTC-GGGEEEESC--CSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEE
T ss_pred             ------------CCC-HHHHHHHHHHcCC-CCcEEECCC--cccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEE
Confidence                        222 3567888889998 489999996  467888888999997654 66889999999999999999


Q ss_pred             cCCCcchhhhHHHHHHhcCCCccccC---CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        620 LPGETLASRVAASQLATLGCPELIAR---THKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       620 ~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      -.......     ++.. |-..++..   |.+++++...++.+|++.++++++..
T Consensus       300 ~~~~~~~e-----~i~~-~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~  348 (374)
T 2iw1_A          300 TAVCGYAH-----YIAD-ANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENA  348 (374)
T ss_dssp             ETTSTTTH-----HHHH-HTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             ecCCCchh-----hhcc-CCceEEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            77544333     3333 23344443   89999999999999999998887653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.16  E-value=6e-10  Score=114.47  Aligned_cols=159  Identities=9%  Similarity=-0.006  Sum_probs=127.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHH--H
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCP--THADSLNNLANIKREQGYIEEATRLYLKALEVFPE----FAAAHSNL--A  191 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~l--a  191 (673)
                      +..+..+...|++++|+..+++.+..+|  ++.+++..++.++..+|+.+.|.+.+++..+.+|+    +......+  |
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea  183 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES  183 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence            3444555668999999999999999887  88999999999999999999999999999999983    23334444  4


Q ss_pred             HHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHH
Q psy17691        192 SVLQQQG--KLTDALLHYKEAIRIQPS--FADAYSNMGNTLKEMQDIQGALQCYSRAIQI----------NPGFADAHSN  257 (673)
Q Consensus       192 ~~~~~~g--~~~eA~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l----------~p~~~~a~~~  257 (673)
                      ++....|  ++++|...|+++.+..|+  ....+.+   ++.++|++++|.+.++++++.          +|++++++.|
T Consensus       184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN  260 (310)
T 3mv2_B          184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN  260 (310)
T ss_dssp             HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence            4466666  899999999998888876  3334444   899999999999999988776          5889999999


Q ss_pred             HHHHHHHcCCCc-------cccCCCCHHHHH
Q psy17691        258 LASIHKDSGKRG-------FFIRTDLNSAYF  281 (673)
Q Consensus       258 La~~~~~~g~~~-------l~l~p~~~~a~~  281 (673)
                      ++.+...+|+-.       .+++|+++...-
T Consensus       261 ~i~l~~~lgk~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          261 QITLALMQGLDTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             HHHHHHHTTCTTHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHHhChHHHHHHHHHHHhCCCChHHHH
Confidence            998888888732       567888887543

>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}

Probab=99.16  E-value=1.1e-10  Score=109.16  Aligned_cols=144  Identities=13%  Similarity=0.065  Sum_probs=109.8

Q ss_pred             EEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCC
Q psy17691        476 IVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFP  553 (673)
Q Consensus       476 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (673)
                      ++|++++++  .|..+.++++|..+ +..|+.+|+++|                                         .
T Consensus         3 ~~i~~~G~~~~~Kg~~~li~a~~~l-~~~~~~~l~i~G-----------------------------------------~   40 (166)
T 3qhp_A            3 FKIAMVGRYSNEKNQSVLIKAVALS-KYKQDIVLLLKG-----------------------------------------K   40 (166)
T ss_dssp             EEEEEESCCSTTTTHHHHHHHHHTC-TTGGGEEEEEEC-----------------------------------------C
T ss_pred             eEEEEEeccchhcCHHHHHHHHHHh-ccCCCeEEEEEe-----------------------------------------C
Confidence            345555544  58889999999886 566999999988                                         3


Q ss_pred             hhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCC-ceeec-CCCcchhhhH
Q psy17691        554 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGT-PVVTL-PGETLASRVA  630 (673)
Q Consensus       554 ~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~Gv-Pvvt~-~g~~~~~r~~  630 (673)
                      +...+.+++.+.+.|+   ++.| |.++.++....|+.+|+++-|. ..+.|++.+|||++|+ |||+- .+.....   
T Consensus        41 g~~~~~~~~~~~~~~~---~v~~-g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~---  113 (166)
T 3qhp_A           41 GPDEKKIKLLAQKLGV---KAEF-GFVNSNELLEILKTCTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQ---  113 (166)
T ss_dssp             STTHHHHHHHHHHHTC---EEEC-CCCCHHHHHHHHTTCSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGG---
T ss_pred             CccHHHHHHHHHHcCC---eEEE-eecCHHHHHHHHHhCCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhh---
Confidence            4456778888899988   8999 9999999999999999997765 5677999999999996 99993 3322221   


Q ss_pred             HHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        631 ASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       631 ~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                        ++..-+. -+...|.+++.+...++.+|++.+.+++...
T Consensus       114 --~~~~~~~-~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~  151 (166)
T 3qhp_A          114 --FALDERS-LFEPNNAKDLSAKIDWWLENKLERERMQNEY  151 (166)
T ss_dssp             --GCSSGGG-EECTTCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             --hccCCce-EEcCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence              0111111 2334689999999999999999999887653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.16  E-value=2.8e-10  Score=99.21  Aligned_cols=101  Identities=18%  Similarity=0.250  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       167 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  246 (673)
                      ++|+..|+++++.+|++..+++++|.++...|++++|+..|+++++++|++..++.++|.++..+|++++|+.+|+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCC--CCHHHHHHHHHHHHHcCC
Q psy17691        247 INP--GFADAHSNLASIHKDSGK  267 (673)
Q Consensus       247 l~p--~~~~a~~~La~~~~~~g~  267 (673)
                      +.|  .+......+...+..+++
T Consensus        82 ~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHhcc
Confidence            987  455666667666655543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.13  E-value=3e-11  Score=103.95  Aligned_cols=86  Identities=19%  Similarity=0.233  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q psy17691        184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF------ADAHSN  257 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~  257 (673)
                      ...++++|.++...|++++|++.|+++++++|+++.++.++|.++..+|++++|+.+|+++++++|++      ..++++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            34555556666666666666666666666666666666666666666666666666666666666655      555666


Q ss_pred             HHHHHHHcCCCc
Q psy17691        258 LASIHKDSGKRG  269 (673)
Q Consensus       258 La~~~~~~g~~~  269 (673)
                      ++.++...|+++
T Consensus        84 ~~~~~~~~~~~~   95 (111)
T 2l6j_A           84 LELAQGAVGSVQ   95 (111)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHHHhHh
Confidence            666666555554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.13  E-value=4.7e-10  Score=92.61  Aligned_cols=82  Identities=29%  Similarity=0.533  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK  263 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~  263 (673)
                      ..+++.+|.++...|++++|+..|+++++.+|++..++.++|.++..+|++++|+.+|+++++++|++..++.++|.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555554


Q ss_pred             Hc
Q psy17691        264 DS  265 (673)
Q Consensus       264 ~~  265 (673)
                      ..
T Consensus        89 ~~   90 (91)
T 1na3_A           89 KQ   90 (91)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*

Probab=99.13  E-value=1.6e-10  Score=124.05  Aligned_cols=150  Identities=13%  Similarity=0.081  Sum_probs=117.7

Q ss_pred             CCCCCcEEEecCCcc---cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchh
Q psy17691        470 GLPEDAIVYCNFNQL---YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSI  546 (673)
Q Consensus       470 ~l~~~~~~~~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (673)
                      +++.+.+++++++++   .|..+.++++|.++.++.|+.+|+++|                                   
T Consensus       203 ~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G-----------------------------------  247 (406)
T 2gek_A          203 GYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVG-----------------------------------  247 (406)
T ss_dssp             TCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEES-----------------------------------
T ss_pred             hccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEc-----------------------------------
Confidence            344445666666766   688999999999999999999999988                                   


Q ss_pred             hhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-C-CCCCcchhhhhhhcCCceeecCCCc
Q psy17691        547 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-P-LCNGHTTSMDVLWTGTPVVTLPGET  624 (673)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~-p~~g~~t~~eal~~GvPvvt~~g~~  624 (673)
                            ++.. +.+++.++++   .++|.|.|.++..+....|+.+|+++-| . ..+.|++++|||++|+|||+-....
T Consensus       248 ------~~~~-~~l~~~~~~~---~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~~~  317 (406)
T 2gek_A          248 ------RGDE-DELREQAGDL---AGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDA  317 (406)
T ss_dssp             ------CSCH-HHHHHHTGGG---GGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECCCHH
T ss_pred             ------CCcH-HHHHHHHHhc---cCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEecCCc
Confidence                  2333 5677766655   5899999999999999999999999877 4 6677999999999999999976522


Q ss_pred             chhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        625 LASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       625 ~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      +.     .++. -|-..++.  .|.+++++...++.+|++.+.+++..
T Consensus       318 ~~-----e~i~-~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~  359 (406)
T 2gek_A          318 FR-----RVLA-DGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVAR  359 (406)
T ss_dssp             HH-----HHHT-TTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HH-----HHhc-CCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            21     1222 24455665  78999999999999999998887654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.12  E-value=5.7e-10  Score=92.11  Aligned_cols=85  Identities=34%  Similarity=0.473  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        148 THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT  227 (673)
Q Consensus       148 ~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  227 (673)
                      .+..+++.+|.++...|++++|+.+|+++++.+|++..++.++|.++...|++++|+..|+++++++|++..++.++|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcC
Q psy17691        228 LKEMQ  232 (673)
Q Consensus       228 ~~~~g  232 (673)
                      +..+|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            87765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.09  E-value=5e-10  Score=96.10  Aligned_cols=95  Identities=17%  Similarity=0.163  Sum_probs=89.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q psy17691        149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF------ADAYS  222 (673)
Q Consensus       149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~  222 (673)
                      ++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999      89999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHH
Q psy17691        223 NMGNTLKEMQDIQGALQCYSR  243 (673)
Q Consensus       223 ~lg~~~~~~g~~~eA~~~~~~  243 (673)
                      .+|.++..+|++++|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999998888776654

>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*

Probab=99.09  E-value=1.9e-10  Score=127.63  Aligned_cols=171  Identities=8%  Similarity=-0.031  Sum_probs=125.5

Q ss_pred             ccccccC-----CCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCe-eEEeeccCCcCCCCCCCCcccccCCCCccc
Q psy17691        464 TSRQQYG-----LPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNS-ILWLLKFPAVGEANISRPLFRPRLRPSAST  535 (673)
Q Consensus       464 ~~r~~~~-----l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  535 (673)
                      ..|+++|     ++.+.+++++++++  .|..+.++++|.++.+..|+. +|+++|.. .|...    .+          
T Consensus       246 ~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~-~~~~~----~y----------  310 (499)
T 2r60_A          246 KITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGI-ENPFE----DY----------  310 (499)
T ss_dssp             HHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSC-SBTTT----BC----------
T ss_pred             HHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCC-CCccc----cc----------
Confidence            4567778     88888888888876  488999999999988877876 67777710 00000    00          


Q ss_pred             hhhhhccCchhhhhccCChhh---hhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccc----cEEecCC-CCCCcchh
Q psy17691        536 SIVLKAVPNSILWLLKFPAVG---EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----DVCLDTP-LCNGHTTS  607 (673)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~----Di~Ld~~-p~~g~~t~  607 (673)
                             +       ..++..   .+.+++.++++|+. ++|+|+|.++.++....|+.+    ||++-|. .++-|++.
T Consensus       311 -------~-------~l~~~~~~y~~~l~~~~~~~~l~-~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~  375 (499)
T 2r60_A          311 -------S-------RAGQEEKEILGKIIELIDNNDCR-GKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAP  375 (499)
T ss_dssp             -------T-------TSCHHHHHHHHHHHHHHHHTTCB-TTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHH
T ss_pred             -------c-------cccccchHHHHHHHHHHHhcCCC-ceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHH
Confidence                   0       000112   57888999999994 899999999999999999999    9997654 66779999


Q ss_pred             hhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        608 MDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       608 ~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      +|||++|+|||+-.......     ++.. |-..++.  .|.+++.+...++.+|++.+.+++..
T Consensus       376 lEAma~G~PvI~s~~~g~~e-----~v~~-~~~g~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~  434 (499)
T 2r60_A          376 VEAMASGLPAVVTRNGGPAE-----ILDG-GKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEK  434 (499)
T ss_dssp             HHHHHTTCCEEEESSBHHHH-----HTGG-GTSSEEECTTCHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEecCCCHHH-----HhcC-CceEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            99999999999976433222     2222 3334444  48999999999999999998887654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.08  E-value=2e-09  Score=97.81  Aligned_cols=120  Identities=18%  Similarity=0.200  Sum_probs=107.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q psy17691        131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ----QGKLTDALLH  206 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~  206 (673)
                      ++++|+.+|+++.+.....  +.  +|.+|...+..++|+++|+++.+.  +++.++++||.+|..    .+++++|+++
T Consensus        10 d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            7899999999999986444  44  999999999999999999999987  789999999999999    8999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        207 YKEAIRIQPSFADAYSNMGNTLKE----MQDIQGALQCYSRAIQINPGFADAHSNLAS  260 (673)
Q Consensus       207 ~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~l~p~~~~a~~~La~  260 (673)
                      |+++.+.  .++.++++||.+|..    .+++++|+.+|++|.+.  ++..+..+|+.
T Consensus        84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~  137 (138)
T 1klx_A           84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN  137 (138)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence            9999987  679999999999999    99999999999999987  56777776654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.06  E-value=5.1e-10  Score=101.97  Aligned_cols=120  Identities=23%  Similarity=0.251  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF------  217 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------  217 (673)
                      ..++..+|.++...|++++|+.++++++++.+..      ..++.++|.++...|++++|+.++++++++.+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            5678999999999999999999999999986543      2589999999999999999999999999886543      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCCc
Q psy17691        218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG------FADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       218 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~------~~~a~~~La~~~~~~g~~~  269 (673)
                      ..++.++|.++..+|++++|+.++++++++.+.      ...++.++|.++...|+++
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  146 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD  146 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence            568999999999999999999999999987432      2567889999999999875

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.05  E-value=3.7e-10  Score=121.06  Aligned_cols=232  Identities=13%  Similarity=0.131  Sum_probs=133.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH--------------HHHHHcCChhhhcCChhhHH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLA--------------NALKEKGQINVLHKPPYKYT   66 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la--------------~~l~~~g~~~~A~~~~~~~~   66 (673)
                      ++++|++.|.++     +++..+...+.++...|+.+.+..++..+              .+|.+.|++.++... ++. 
T Consensus        47 ~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f-~~~-  119 (449)
T 1b89_A           47 MVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF-ING-  119 (449)
T ss_dssp             -------------------------------------------------------------------CHHHHTTT-TTC-
T ss_pred             CHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHH-HcC-
Confidence            467889999764     46678889999999988866665555444              366777777775532 211 


Q ss_pred             hhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691         67 RELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC  146 (673)
Q Consensus        67 ~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  146 (673)
                        -.......+|..+...|....+              ...+...     ......+.++..+|++++|+++|+++    
T Consensus       120 --pn~~a~~~IGd~~~~~g~yeeA--------------~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA----  174 (449)
T 1b89_A          120 --PNNAHIQQVGDRCYDEKMYDAA--------------KLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA----  174 (449)
T ss_dssp             --C----------------CTTTH--------------HHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH----
T ss_pred             --CcHHHHHHHHHHHHHcCCHHHH--------------HHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc----
Confidence              1112345566666666654433              3333322     22335567778899999999999999    


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN  226 (673)
Q Consensus       147 p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~  226 (673)
                       +++.+|.....++...|+++.|..+..+ +..+|++   ...+...|.+.|++++|+.++++++.+++.+...+..+|.
T Consensus       175 -~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~i  249 (449)
T 1b89_A          175 -NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI  249 (449)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred             -CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence             5789999999999999999999888775 3344444   5568899999999999999999999999999999999999


Q ss_pred             HHHH--cCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCCc
Q psy17691        227 TLKE--MQDIQGALQCYSRAIQINP-----GFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       227 ~~~~--~g~~~eA~~~~~~Al~l~p-----~~~~a~~~La~~~~~~g~~~  269 (673)
                      +|.+  .++..+.++.|.+.+.+.|     .+...|..+..+|...++++
T Consensus       250 l~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d  299 (449)
T 1b89_A          250 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD  299 (449)
T ss_dssp             HHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence            9875  4677888888888888888     88889999999999999998

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.03  E-value=3.5e-09  Score=114.24  Aligned_cols=119  Identities=13%  Similarity=0.089  Sum_probs=102.9

Q ss_pred             cCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCP------THADSLNNLANIKREQGYIEEATRLYLKALEVF------PEFAAAHSNLASVLQQ  196 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p------~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~la~~~~~  196 (673)
                      .|++++|+.++++++...+      ....++.++|.+|..+|++++|...+++++...      +....++.++|.+|..
T Consensus       108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
T 4b4t_Q          108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK  187 (434)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            6799999999999998742      336789999999999999999999999998762      3347799999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        197 QGKLTDALLHYKEAIRIQP---SF----ADAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       197 ~g~~~eA~~~~~~al~~~p---~~----~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                      +|++++|...|++++...+   ..    ...+..+|.++...|++++|..+|.++++.
T Consensus       188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            9999999999999998742   22    356788999999999999999999999875

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.00  E-value=2e-09  Score=91.65  Aligned_cols=87  Identities=18%  Similarity=0.337  Sum_probs=50.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHH
Q psy17691        180 FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP--GFADAHSN  257 (673)
Q Consensus       180 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p--~~~~a~~~  257 (673)
                      +|+++.+++++|.++...|++++|+..|+++++++|+++.+|.++|.+|..+|++++|+++|++++++.|  .+......
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            4566666666666666666666666666666666666666666666666666666666666666666544  23444444


Q ss_pred             HHHHHHHcC
Q psy17691        258 LASIHKDSG  266 (673)
Q Consensus       258 La~~~~~~g  266 (673)
                      +..++...+
T Consensus        83 l~~~l~~~~   91 (100)
T 3ma5_A           83 LQDAKLKAE   91 (100)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcc
Confidence            444444433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.99  E-value=1.5e-09  Score=119.68  Aligned_cols=123  Identities=14%  Similarity=-0.009  Sum_probs=106.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHH
Q psy17691        126 VLLLIQVSEAEECYNTALRL-----CPTH---ADSLNNLANIKREQGYIEEATRLYLKALEV-----FPEF---AAAHSN  189 (673)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~  189 (673)
                      +..+|+|++|+..|++++++     .|++   ..++.+||.+|..+|+|++|+.++++++++     .|++   ...+++
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            44589999999999999997     3444   567999999999999999999999999986     3444   567999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691        190 LASVLQQQGKLTDALLHYKEAIRI-----QPSF---ADAYSNMGNTLKEMQDIQGALQCYSRAIQIN  248 (673)
Q Consensus       190 la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~  248 (673)
                      ||.+|..+|++++|+..|++|+++     .|++   .+...+++.++.+++++++|...|+++.+..
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999986     4555   4567899999999999999999999987643

>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*

Probab=98.99  E-value=1.3e-09  Score=126.49  Aligned_cols=171  Identities=8%  Similarity=-0.031  Sum_probs=122.2

Q ss_pred             ccccccCC--CCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691        464 TSRQQYGL--PEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL  539 (673)
Q Consensus       464 ~~r~~~~l--~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (673)
                      ..|+.+|+  +.+.+++++++++.  |..+.+++++.++.+..|+.+|+++|......  ..            ..    
T Consensus       559 ~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~--~~------------~~----  620 (816)
T 3s28_A          559 ENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKE--SK------------DN----  620 (816)
T ss_dssp             CBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSC--CC------------CH----
T ss_pred             hHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCccc--cc------------ch----
Confidence            35677788  67777888888664  88999999999998888999999998210000  00            00    


Q ss_pred             hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccC----cChHHHHHhcc-cccEEecC-CCCCCcchhhhhhhc
Q psy17691        540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV----AAKEEHVRRGQ-LADVCLDT-PLCNGHTTSMDVLWT  613 (673)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~----~~~~~~~~~~~-~~Di~Ld~-~p~~g~~t~~eal~~  613 (673)
                                  -.....+.+++.+++.|+ .++|.|+|.    .+.++....|. .+||++-| ..++-|+|.+|||++
T Consensus       621 ------------e~~~~~~~L~~li~~lgL-~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~  687 (816)
T 3s28_A          621 ------------EEKAEMKKMYDLIEEYKL-NGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTC  687 (816)
T ss_dssp             ------------HHHHHHHHHHHHHHHTTC-BBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHT
T ss_pred             ------------hhHHHHHHHHHHHHHcCC-CCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHc
Confidence                        001135678888999999 499999994    44578888887 68999765 567889999999999


Q ss_pred             CCceeecCCCcchhhhHHHHHHhcCCCccccC--CHHHHHHHHHHhc----CCHHHHHHHHhhh
Q psy17691        614 GTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG----TDRDYCEKALLYH  671 (673)
Q Consensus       614 GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~yv~~a~~la----~d~~~~~~~~~~~  671 (673)
                      |+|||+-.......     ++ .-|-..++..  |.+++.+...++.    .|++.+++++...
T Consensus       688 G~PVIasd~GG~~E-----iV-~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~a  745 (816)
T 3s28_A          688 GLPTFATCKGGPAE-----II-VHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGG  745 (816)
T ss_dssp             TCCEEEESSBTHHH-----HC-CBTTTBEEECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred             CCCEEEeCCCChHH-----HH-ccCCcEEEeCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999865433222     11 1244555554  7899998886665    8999998887653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.98  E-value=8.5e-10  Score=93.12  Aligned_cols=90  Identities=19%  Similarity=0.190  Sum_probs=64.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        154 NNLANIKREQGYIEEATRLYLKALEVFPEFAA-AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ  232 (673)
Q Consensus       154 ~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g  232 (673)
                      +.+|.++...|++++|+..|+++++.+|++.. +++++|.++...|++++|++.|+++++++|++..++.+        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            45677777777777777777777777777777 77777777777777777777777777777777766643        4


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q psy17691        233 DIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       233 ~~~eA~~~~~~Al~l~p~~  251 (673)
                      .+.+++.+|++++..+|++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHhccCccc
Confidence            5666777777776666554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.95  E-value=3.2e-09  Score=90.38  Aligned_cols=87  Identities=15%  Similarity=0.207  Sum_probs=73.3

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q psy17691        145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS--FADAYS  222 (673)
Q Consensus       145 ~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~  222 (673)
                      .+|+++.+++.+|.+|..+|++++|+.+|+++++++|++..+|+++|.+|...|++++|++.|++++++.|.  +.....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            479999999999999999999999999999999999999999999999999999999999999999998654  344444


Q ss_pred             HHHHHHHHc
Q psy17691        223 NMGNTLKEM  231 (673)
Q Consensus       223 ~lg~~~~~~  231 (673)
                      .+..++...
T Consensus        82 ~l~~~l~~~   90 (100)
T 3ma5_A           82 ELQDAKLKA   90 (100)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            555554443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.94  E-value=1.2e-08  Score=104.71  Aligned_cols=184  Identities=15%  Similarity=0.034  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhhc
Q psy17691          5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDF   84 (673)
Q Consensus         5 Ai~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~l   84 (673)
                      |+..+++.++..+.+..++..+|.++...|+++.+..++..+.                                     
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i-------------------------------------  127 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGI-------------------------------------  127 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------------------------
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh-------------------------------------
Confidence            6778888888777778888999999999997555555444331                                     


Q ss_pred             CCCcccccccccCCCCchhHHHHHHHhcCC--CChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHH-
Q psy17691         85 GNHPTSHLMQSVPGMHNKSRVEIFCYALSP--DDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPT----HADSLNNL-  156 (673)
Q Consensus        85 ~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p--~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~L-  156 (673)
                                                ..+|  +..+++ ..+..++.+|+.+.|.+.++++.+.+|+    +..+...+ 
T Consensus       128 --------------------------~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La  181 (310)
T 3mv2_B          128 --------------------------DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA  181 (310)
T ss_dssp             --------------------------TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             --------------------------ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence                                      0111  233344 3345667799999999999999999983    23334444 


Q ss_pred             -HHHHHHcC--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHH
Q psy17691        157 -ANIKREQG--YIEEATRLYLKALEVFPE--FAAAHSNLASVLQQQGKLTDALLHYKEAIRI----------QPSFADAY  221 (673)
Q Consensus       157 -g~~~~~~g--~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----------~p~~~~~~  221 (673)
                       |++....|  ++.+|...|+++.+..|+  ....+++   ++..+|++++|.+.++++++.          +|++++++
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L  258 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL  258 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence             55566667  999999999999998887  3444444   899999999999999988776          48899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        222 SNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHS  256 (673)
Q Consensus       222 ~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~  256 (673)
                      .|+..+...+|+  +|.++++++.+.+|+++.+.-
T Consensus       259 aN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          259 ANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             HHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence            999999999998  999999999999999987643

>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A

Probab=98.94  E-value=4.1e-09  Score=116.36  Aligned_cols=156  Identities=15%  Similarity=-0.020  Sum_probs=116.4

Q ss_pred             ccccccCCCC--CcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691        464 TSRQQYGLPE--DAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL  539 (673)
Q Consensus       464 ~~r~~~~l~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (673)
                      ..|+++|++.  +.+++++++++  .|..+.++++|.++.+  ++.+|+++|.                           
T Consensus       279 ~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~---------------------------  329 (485)
T 2qzs_A          279 QLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGA---------------------------  329 (485)
T ss_dssp             HHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEE---------------------------
T ss_pred             HHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeC---------------------------
Confidence            4577889986  66777777765  5889999999999876  5899999881                           


Q ss_pred             hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEE-eccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCce
Q psy17691        540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRIL-FSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPV  617 (673)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~-~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPv  617 (673)
                                  .+....+.+++...+.|   ++|+ |.|. +.++....|..+|+++-|. .++.|++.+|||++|+||
T Consensus       330 ------------g~~~~~~~l~~~~~~~~---~~v~~~~g~-~~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~Pv  393 (485)
T 2qzs_A          330 ------------GDPVLQEGFLAAAAEYP---GQVGVQIGY-HEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLP  393 (485)
T ss_dssp             ------------ECHHHHHHHHHHHHHST---TTEEEEESC-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEE
T ss_pred             ------------CchHHHHHHHHHHHhCC---CcEEEeCCC-CHHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCE
Confidence                        01123567778777775   6886 7887 6677778999999996654 668899999999999999


Q ss_pred             eecCCCcchhhhHHHHHHhcC---------CCccccC--CHHHHHHHHHHhc---CCHHHHHHHHhh
Q psy17691        618 VTLPGETLASRVAASQLATLG---------CPELIAR--THKEYQDIAIRLG---TDRDYCEKALLY  670 (673)
Q Consensus       618 vt~~g~~~~~r~~~~~l~~~g---------l~~~ia~--~~~~yv~~a~~la---~d~~~~~~~~~~  670 (673)
                      |+-....+..     ++ .-|         -..++..  |.++..+...++.   .|++.+++++..
T Consensus       394 I~s~~gg~~e-----~v-~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~  454 (485)
T 2qzs_A          394 LVRRTGGLAD-----TV-SDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQ  454 (485)
T ss_dssp             EEESSHHHHH-----HC-CBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             EECCCCCccc-----ee-ccCccccccccccceEEECCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9865421111     11 112         4555543  8999999999988   899999888754

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.94  E-value=5.1e-08  Score=111.59  Aligned_cols=202  Identities=12%  Similarity=0.038  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhh
Q psy17691          5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPD-AYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSD   83 (673)
Q Consensus         5 Ai~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~-a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~   83 (673)
                      ....|+++|...|.+++.|+..+..+...|+.+.+. ..+..|.                                    
T Consensus       328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi------------------------------------  371 (679)
T 4e6h_A          328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ------------------------------------  371 (679)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH------------------------------------
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH------------------------------------
Confidence            457799999999999999999998888888654442 3333332                                    


Q ss_pred             cCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHh-----------CCC---
Q psy17691         84 FGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFS-YIISVLLLIQVSEAEECYNTALRL-----------CPT---  148 (673)
Q Consensus        84 l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~-----------~p~---  148 (673)
                                                 ...|.....|. ++......|++++|..+|+++++.           .|.   
T Consensus       372 ---------------------------~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~  424 (679)
T 4e6h_A          372 ---------------------------QCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES  424 (679)
T ss_dssp             ---------------------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             ---------------------------HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence                                       23455555554 344445688999999999999975           253   


Q ss_pred             --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCH
Q psy17691        149 --------HADSLNNLANIKREQGYIEEATRLYLKALEV-FPEFAAAHSNLASVLQQQGK-LTDALLHYKEAIRIQPSFA  218 (673)
Q Consensus       149 --------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~  218 (673)
                              ...+|...+....+.|+.+.|...|.+|++. .+....+|...+.+....++ ++.|.+.|+++++..|+++
T Consensus       425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~  504 (679)
T 4e6h_A          425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG  504 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH
T ss_pred             hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch
Confidence                    3457889999999999999999999999998 44556778877877777654 9999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCCc
Q psy17691        219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPG---FADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~---~~~a~~~La~~~~~~g~~~  269 (673)
                      ..|..++......|+.+.|...|++|+...|+   ....|..........|+.+
T Consensus       505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~  558 (679)
T 4e6h_A          505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN  558 (679)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999883   5677888888888888876

>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A

Probab=98.93  E-value=4.7e-09  Score=115.87  Aligned_cols=157  Identities=13%  Similarity=0.017  Sum_probs=116.2

Q ss_pred             ccccccCCCCC-cEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhh
Q psy17691        464 TSRQQYGLPED-AIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLK  540 (673)
Q Consensus       464 ~~r~~~~l~~~-~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (673)
                      ..|+++|++.+ .+++++++++  .|..+.++++|.++.+  ++.+|+++|.                            
T Consensus       279 ~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~----------------------------  328 (485)
T 1rzu_A          279 AVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGA----------------------------  328 (485)
T ss_dssp             HHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEEC----------------------------
T ss_pred             HHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeC----------------------------
Confidence            46778899975 5677777766  4888999999999876  5899999881                            


Q ss_pred             ccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEE-eccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCcee
Q psy17691        541 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRIL-FSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVV  618 (673)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~-~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvv  618 (673)
                                 .+...++.+++...++|   ++|+ |.|. +.++....|..+|+++-|. .++.|++.+|||++|+|||
T Consensus       329 -----------g~~~~~~~l~~~~~~~~---~~v~~~~g~-~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI  393 (485)
T 1rzu_A          329 -----------GDVALEGALLAAASRHH---GRVGVAIGY-NEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPV  393 (485)
T ss_dssp             -----------BCHHHHHHHHHHHHHTT---TTEEEEESC-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEE
T ss_pred             -----------CchHHHHHHHHHHHhCC---CcEEEecCC-CHHHHHHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEE
Confidence                       01123567777777775   6887 7887 6667678999999997654 6788999999999999999


Q ss_pred             ecCCCcchhhhHHHHHHhcC---------CCccccC--CHHHHHHHHHHhc---CCHHHHHHHHhhh
Q psy17691        619 TLPGETLASRVAASQLATLG---------CPELIAR--THKEYQDIAIRLG---TDRDYCEKALLYH  671 (673)
Q Consensus       619 t~~g~~~~~r~~~~~l~~~g---------l~~~ia~--~~~~yv~~a~~la---~d~~~~~~~~~~~  671 (673)
                      +-.......     ++. -|         -..++..  |.++..+...++.   .|++.+++++...
T Consensus       394 ~s~~gg~~e-----~v~-~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~  454 (485)
T 1rzu_A          394 VARTGGLAD-----TVI-DANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLG  454 (485)
T ss_dssp             EESSHHHHH-----HCC-BCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             EeCCCChhh-----eec-ccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            865421111     111 12         3455543  8899999999988   8999999887643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.85  E-value=5e-09  Score=88.26  Aligned_cols=89  Identities=20%  Similarity=0.220  Sum_probs=80.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHAD-SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK  199 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  199 (673)
                      ..+..++..|++++|+..|+++++.+|++.. +++.+|.++..+|++++|+.+|+++++++|++..++.+        +.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            4556677899999999999999999999999 99999999999999999999999999999999988755        66


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q psy17691        200 LTDALLHYKEAIRIQPSF  217 (673)
Q Consensus       200 ~~eA~~~~~~al~~~p~~  217 (673)
                      +.+|+..|++++..+|++
T Consensus        77 ~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           77 VMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHhccCccc
Confidence            788899999888887765

>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*

Probab=98.83  E-value=1.8e-08  Score=107.32  Aligned_cols=152  Identities=10%  Similarity=0.053  Sum_probs=110.1

Q ss_pred             cccccC-CCC-CcEEEecCCccc---ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691        465 SRQQYG-LPE-DAIVYCNFNQLY---KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL  539 (673)
Q Consensus       465 ~r~~~~-l~~-~~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (673)
                      .|+++| ++. +.+++++++++.   |..+.+++++.++.++.|+.++++...                           
T Consensus       194 ~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g---------------------------  246 (384)
T 1vgv_A          194 LAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVH---------------------------  246 (384)
T ss_dssp             HHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECC---------------------------
T ss_pred             HHHhccccCCCCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcC---------------------------
Confidence            466788 854 556777888765   667889999999999899998887430                           


Q ss_pred             hccCchhhhhccCChh-hhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCcee
Q psy17691        540 KAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVV  618 (673)
Q Consensus       540 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvv  618 (673)
                                   +++ ..+.+++.+   +. .++|.|.|.++.++...+|..+|+++-+.   |+ +++|||++|+|||
T Consensus       247 -------------~~~~~~~~l~~~~---~~-~~~v~~~g~~~~~~~~~~~~~ad~~v~~S---g~-~~lEA~a~G~PvI  305 (384)
T 1vgv_A          247 -------------LNPNVREPVNRIL---GH-VKNVILIDPQEYLPFVWLMNHAWLILTDS---GG-IQEEAPSLGKPVL  305 (384)
T ss_dssp             -------------BCHHHHHHHHHHH---TT-CTTEEEECCCCHHHHHHHHHHCSEEEESS---ST-GGGTGGGGTCCEE
T ss_pred             -------------CCHHHHHHHHHHh---hc-CCCEEEeCCCCHHHHHHHHHhCcEEEECC---cc-hHHHHHHcCCCEE
Confidence                         121 233344432   32 36899999888889999999999997654   44 4899999999999


Q ss_pred             ecCC-CcchhhhHHHHHHhcCCCcccc-CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        619 TLPG-ETLASRVAASQLATLGCPELIA-RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       619 t~~g-~~~~~r~~~~~l~~~gl~~~ia-~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      +.+. ....     .++ .-| ..++. .|.++..+...++.+|++.+++++...
T Consensus       306 ~~~~~~~~~-----e~v-~~g-~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~~~  353 (384)
T 1vgv_A          306 VMRDTTERP-----EAV-TAG-TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAH  353 (384)
T ss_dssp             EESSCCSCH-----HHH-HHT-SEEEECSSHHHHHHHHHHHHHCHHHHHHHHSSC
T ss_pred             EccCCCCcc-----hhh-hCC-ceEEeCCCHHHHHHHHHHHHhChHHHhhhhhcc
Confidence            8753 2211     123 336 44444 589999999999999999999987653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.81  E-value=3.3e-08  Score=106.53  Aligned_cols=150  Identities=13%  Similarity=0.137  Sum_probs=124.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPTHA-----------------DSLNNLANIKREQGYIEEATRLYLKALEVFPE  182 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~  182 (673)
                      +..+..+...|++++|++.|.++++..|+..                 .++.++|.+|..+|++++|.+++++++...+.
T Consensus         8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~   87 (434)
T 4b4t_Q            8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ   87 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            3455667788999999999999999887642                 36889999999999999999999999987665


Q ss_pred             C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q psy17691        183 F------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQP------SFADAYSNMGNTLKEMQDIQGALQCYSRAIQI---  247 (673)
Q Consensus       183 ~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l---  247 (673)
                      .      ..+..+++.++...|++++|+.++++++...+      ....++.++|.+|..+|++++|..++++++..   
T Consensus        88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~  167 (434)
T 4b4t_Q           88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK  167 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence            4      23566788888889999999999999987632      23678899999999999999999999999876   


Q ss_pred             ---CCCCHHHHHHHHHHHHHcCCCc
Q psy17691        248 ---NPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       248 ---~p~~~~a~~~La~~~~~~g~~~  269 (673)
                         .+....++.+++.+|...|+++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~  192 (434)
T 4b4t_Q          168 LDDKPSLVDVHLLESKVYHKLRNLA  192 (434)
T ss_dssp             SSCSTHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccchhHHHHHHHHHHHHHHhCcHH
Confidence               2334678999999999999987

>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*

Probab=98.81  E-value=2.6e-08  Score=104.44  Aligned_cols=128  Identities=16%  Similarity=0.056  Sum_probs=97.6

Q ss_pred             EecCCc--ccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChh
Q psy17691        478 YCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAV  555 (673)
Q Consensus       478 ~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (673)
                      ++++++  ..|..+.+++++.++     +.+|+++|                                         .++
T Consensus       165 i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~i~G-----------------------------------------~g~  198 (342)
T 2iuy_A          165 LLFMGRVSPHKGALEAAAFAHAC-----GRRLVLAG-----------------------------------------PAW  198 (342)
T ss_dssp             EEEESCCCGGGTHHHHHHHHHHH-----TCCEEEES-----------------------------------------CCC
T ss_pred             EEEEeccccccCHHHHHHHHHhc-----CcEEEEEe-----------------------------------------Ccc
Confidence            444444  458888999998876     78899888                                         334


Q ss_pred             hhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-----------CCCCcchhhhhhhcCCceeecCCCc
Q psy17691        556 GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-----------LCNGHTTSMDVLWTGTPVVTLPGET  624 (673)
Q Consensus       556 ~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-----------p~~g~~t~~eal~~GvPvvt~~g~~  624 (673)
                      ..+.+++..+..|   ++|.|+|.++.++....|+.+|+++-|.           .++.|++.+|||++|+|||+-....
T Consensus       199 ~~~~l~~~~~~~~---~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~  275 (342)
T 2iuy_A          199 EPEYFDEITRRYG---STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGC  275 (342)
T ss_dssp             CHHHHHHHHHHHT---TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTT
T ss_pred             cHHHHHHHHHHhC---CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCC
Confidence            4566777777777   7999999999999999999999997764           4678999999999999999976543


Q ss_pred             chhhhHHHHHHhc-CCCccccC-CHHHHHHHHHHhcC
Q psy17691        625 LASRVAASQLATL-GCPELIAR-THKEYQDIAIRLGT  659 (673)
Q Consensus       625 ~~~r~~~~~l~~~-gl~~~ia~-~~~~yv~~a~~la~  659 (673)
                      +..     ++... |-..++.. |.+++.+...++.+
T Consensus       276 ~~e-----~~~~~~~~~g~~~~~d~~~l~~~i~~l~~  307 (342)
T 2iuy_A          276 LAE-----IVPSVGEVVGYGTDFAPDEARRTLAGLPA  307 (342)
T ss_dssp             HHH-----HGGGGEEECCSSSCCCHHHHHHHHHTSCC
T ss_pred             hHH-----HhcccCCCceEEcCCCHHHHHHHHHHHHH
Confidence            322     22221 44556666 99999999888877

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.81  E-value=8.1e-08  Score=100.38  Aligned_cols=140  Identities=16%  Similarity=0.115  Sum_probs=109.7

Q ss_pred             CCCChhHH---HHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHH-HHHHH--H
Q psy17691        113 SPDDGTTF---SYIISVLLL---IQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI-------EEAT-RLYLK--A  176 (673)
Q Consensus       113 ~p~~~~~~---~~~~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~-------~eA~-~~~~~--a  176 (673)
                      .|.+..+|   ..+..++..   .+..+|+.+|++|++++|+++.++..++.+|.....+       .+++ ..++.  +
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            45665555   333334433   3578999999999999999999999888887532111       1111 12222  2


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691        177 LEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD  253 (673)
Q Consensus       177 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~  253 (673)
                      +..+|.++.++..++..+...|++++|+..++++++++|+ ..+|..+|.++...|++++|++.|++|+.++|....
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            3567999999999999999999999999999999999975 778899999999999999999999999999998653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.77  E-value=1.6e-07  Score=85.01  Aligned_cols=92  Identities=16%  Similarity=0.140  Sum_probs=80.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKRE----QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ----QGKL  200 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~  200 (673)
                      .+..++|+.+|+++.+.  .++.++++||.+|..    .+++++|+.+|+++.+.  .++.++++||.+|..    .+++
T Consensus        38 g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~  113 (138)
T 1klx_A           38 QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE  113 (138)
T ss_dssp             TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCH
Confidence            44778899999999987  789999999999999    89999999999999987  789999999999999    8999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691        201 TDALLHYKEAIRIQPSFADAYSNMGN  226 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~~~~~~~~lg~  226 (673)
                      ++|+++|+++.+..  ++.+..+|+.
T Consensus       114 ~~A~~~~~~Aa~~g--~~~A~~~l~~  137 (138)
T 1klx_A          114 KQAVKTFEKACRLG--SEDACGILNN  137 (138)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHC--
T ss_pred             HHHHHHHHHHHHCC--CHHHHHHHhh
Confidence            99999999999974  4566666553

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.72  E-value=2e-08  Score=110.71  Aligned_cols=115  Identities=16%  Similarity=0.048  Sum_probs=95.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---H
Q psy17691        155 NLANIKREQGYIEEATRLYLKALEV-----FPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRI-----QPSF---A  218 (673)
Q Consensus       155 ~Lg~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~  218 (673)
                      ..+..+..+|+|++|+..+++++++     .|++   ..++.+||.+|..+|+|++|+.++++++++     .|++   .
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            3445577899999999999999987     3444   567999999999999999999999999987     4555   5


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCCc
Q psy17691        219 DAYSNMGNTLKEMQDIQGALQCYSRAIQI-----NPGFA---DAHSNLASIHKDSGKRG  269 (673)
Q Consensus       219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l-----~p~~~---~a~~~La~~~~~~g~~~  269 (673)
                      ..+++||.+|..+|++++|+..|++|+++     -|+++   +...+|+.++.++++++
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~  452 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR  452 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999986     46664   45667888887777654

>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A

Probab=98.72  E-value=6.3e-08  Score=102.68  Aligned_cols=144  Identities=13%  Similarity=0.081  Sum_probs=104.9

Q ss_pred             CCCcEEEecCCccc---ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhh
Q psy17691        472 PEDAIVYCNFNQLY---KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILW  548 (673)
Q Consensus       472 ~~~~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (673)
                      +.+.++++++++..   |..+.++++|.++.++.|+.++++..                                     
T Consensus       203 ~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~~~-------------------------------------  245 (375)
T 3beo_A          203 GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPV-------------------------------------  245 (375)
T ss_dssp             TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEEEC-------------------------------------
T ss_pred             cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEEeC-------------------------------------
Confidence            44566777888765   77889999999998888998866532                                     


Q ss_pred             hccCChhhhhhHHHHHHHc-CCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecC--CCcc
Q psy17691        549 LLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP--GETL  625 (673)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~-g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~--g~~~  625 (673)
                           ++. ..+++.+++. +. .++|.|.|..+..+....|..+|+++-+.    |++++|||++|+|||+..  |. .
T Consensus       246 -----g~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~v~~s----g~~~lEA~a~G~Pvi~~~~~~~-~  313 (375)
T 3beo_A          246 -----HMN-PVVRETANDILGD-YGRIHLIEPLDVIDFHNVAARSYLMLTDS----GGVQEEAPSLGVPVLVLRDTTE-R  313 (375)
T ss_dssp             -----CSC-HHHHHHHHHHHTT-CTTEEEECCCCHHHHHHHHHTCSEEEECC----HHHHHHHHHHTCCEEECSSCCS-C
T ss_pred             -----CCC-HHHHHHHHHHhhc-cCCEEEeCCCCHHHHHHHHHhCcEEEECC----CChHHHHHhcCCCEEEecCCCC-C
Confidence                 111 1233434433 32 36899999999889999999999997543    556999999999999873  32 1


Q ss_pred             hhhhHHHHHHhcCCCcccc-CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        626 ASRVAASQLATLGCPELIA-RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       626 ~~r~~~~~l~~~gl~~~ia-~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      .     .++ .-| ..++. .|.++..+...+|.+|++.+++++...
T Consensus       314 ~-----e~v-~~g-~g~~v~~d~~~la~~i~~ll~~~~~~~~~~~~~  353 (375)
T 3beo_A          314 P-----EGI-EAG-TLKLAGTDEETIFSLADELLSDKEAHDKMSKAS  353 (375)
T ss_dssp             H-----HHH-HTT-SEEECCSCHHHHHHHHHHHHHCHHHHHHHCCCC
T ss_pred             c-----eee-cCC-ceEEcCCCHHHHHHHHHHHHhChHhHhhhhhcC
Confidence            1     123 335 44443 699999999999999999999887543

>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*

Probab=98.66  E-value=4e-08  Score=109.80  Aligned_cols=142  Identities=11%  Similarity=-0.014  Sum_probs=96.9

Q ss_pred             eeccCccccccccccccCcccCcc----------cccccccccCCC--CCcEEEecCCccc--ccChhhHHHHHHHHhcc
Q psy17691        437 VLQNGLATNQTNTKTATGEEVPQS----------IVITSRQQYGLP--EDAIVYCNFNQLY--KIDPSTLQMWVNVLKAV  502 (673)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~r~~~~l~--~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~  502 (673)
                      .|.||+.+..+++..-...+....          .....++.+||+  ++.++|++++|+.  |..+.+++++.++++. 
T Consensus       277 ~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~-  355 (536)
T 3vue_A          277 GIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQE-  355 (536)
T ss_dssp             ECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTS-
T ss_pred             EEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhh-
Confidence            478888776665432211111000          012345667887  4567888888775  9999999999999875 


Q ss_pred             cCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcCh
Q psy17691        503 PNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK  582 (673)
Q Consensus       503 p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~  582 (673)
                       +.+|++++.                                       .++.....++.....  . .+++.|.+..+.
T Consensus       356 -~~~l~l~G~---------------------------------------G~~~~~~~~~~~~~~--~-~~~v~~~~~~~~  392 (536)
T 3vue_A          356 -DVQIVLLGT---------------------------------------GKKKFEKLLKSMEEK--Y-PGKVRAVVKFNA  392 (536)
T ss_dssp             -SCEEEEECC---------------------------------------BCHHHHHHHHHHHHH--S-TTTEEEECSCCH
T ss_pred             -CCeEEEEec---------------------------------------cCchHHHHHHHHHhh--c-CCceEEEEeccH
Confidence             456666651                                       022233344444333  3 378999999888


Q ss_pred             HHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeecCC
Q psy17691        583 EEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       583 ~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                      ++....|..+|||+-| .-++-|++.+|||++|+|||+-.-
T Consensus       393 ~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~  433 (536)
T 3vue_A          393 PLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACAST  433 (536)
T ss_dssp             HHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSC
T ss_pred             HHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCC
Confidence            8888899999999664 567889999999999999998543

>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*

Probab=98.66  E-value=2.2e-08  Score=108.40  Aligned_cols=128  Identities=7%  Similarity=-0.071  Sum_probs=93.7

Q ss_pred             cccccChhhHHHHHHHHhcccC---eeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhh
Q psy17691        483 QLYKIDPSTLQMWVNVLKAVPN---SILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEAN  559 (673)
Q Consensus       483 ~~~K~~~~~~~~~~~il~~~p~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (673)
                      ...|..+..+++++.+.+..|+   .+|+++|                                         ++..+  
T Consensus       252 ~~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG-----------------------------------------~~~~~--  288 (413)
T 2x0d_A          252 VKRNAFTLIVEALKIFVQKYDRSNEWKIISVG-----------------------------------------EKHKD--  288 (413)
T ss_dssp             CGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEE-----------------------------------------SCCCC--
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCCceEEEEEc-----------------------------------------CCchh--
Confidence            3457788889999999888886   7898887                                         11111  


Q ss_pred             HHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcC
Q psy17691        560 IQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLG  638 (673)
Q Consensus       560 ~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~g  638 (673)
                           .++|+ .++|.|+|.++.++....|+.+|||+-|. .++-|++.+|||++|+|||+-.|.. ..     +.. -|
T Consensus       289 -----~~l~~-~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~~~~g~-~e-----~v~-~~  355 (413)
T 2x0d_A          289 -----IALGK-GIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVITNKYEN-KD-----LSN-WH  355 (413)
T ss_dssp             -----EEEET-TEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEEECBTT-BC-----GGG-TB
T ss_pred             -----hhcCC-cCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEEeCCCc-ch-----hhh-cC
Confidence                 23466 37999999999999999999999997754 4577999999999999999954421 11     122 24


Q ss_pred             CCcccc--CCHHHHHHHHHHhcCCHHHHHH
Q psy17691        639 CPELIA--RTHKEYQDIAIRLGTDRDYCEK  666 (673)
Q Consensus       639 l~~~ia--~~~~~yv~~a~~la~d~~~~~~  666 (673)
                      -..++.  .|.+++.+...+|.+|++.+++
T Consensus       356 ~~G~lv~~~d~~~la~ai~~ll~~~~~~~~  385 (413)
T 2x0d_A          356 SNIVSLEQLNPENIAETLVELCMSFNNRDV  385 (413)
T ss_dssp             TTEEEESSCSHHHHHHHHHHHHHHTC----
T ss_pred             CCEEEeCCCCHHHHHHHHHHHHcCHHHHHH
Confidence            444432  5899999999999998887765

>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*

Probab=98.65  E-value=6.4e-08  Score=102.26  Aligned_cols=151  Identities=12%  Similarity=0.062  Sum_probs=103.3

Q ss_pred             ccccCCCCCcE-EEecCCcc--cccChhhHHHHHHHHhcccCee-EEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691        466 RQQYGLPEDAI-VYCNFNQL--YKIDPSTLQMWVNVLKAVPNSI-LWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA  541 (673)
Q Consensus       466 r~~~~l~~~~~-~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (673)
                      |++++++.+.. ++.+.++.  .|..+.+++++.++.+   +.+ ++++|                              
T Consensus       174 ~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~---~~~~l~i~G------------------------------  220 (364)
T 1f0k_A          174 QQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD---SVTIWHQSG------------------------------  220 (364)
T ss_dssp             HHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG---GEEEEEECC------------------------------
T ss_pred             hhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC---CcEEEEEcC------------------------------
Confidence            45567776543 44455544  4777777788888754   566 45555                              


Q ss_pred             cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecC
Q psy17691        542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP  621 (673)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~  621 (673)
                                 ++. .+.+++.+++.|+  ++|.|.|.+  ++....|..+|+++-|.   ||+|++|||++|+|||+.+
T Consensus       221 -----------~~~-~~~l~~~~~~~~~--~~v~~~g~~--~~~~~~~~~ad~~v~~s---g~~~~~EAma~G~Pvi~~~  281 (364)
T 1f0k_A          221 -----------KGS-QQSVEQAYAEAGQ--PQHKVTEFI--DDMAAAYAWADVVVCRS---GALTVSEIAAAGLPALFVP  281 (364)
T ss_dssp             -----------TTC-HHHHHHHHHHTTC--TTSEEESCC--SCHHHHHHHCSEEEECC---CHHHHHHHHHHTCCEEECC
T ss_pred             -----------Cch-HHHHHHHHhhcCC--CceEEecch--hhHHHHHHhCCEEEECC---chHHHHHHHHhCCCEEEee
Confidence                       222 3567888888887  479999988  46667777899998763   6999999999999999986


Q ss_pred             CCcch--hhhHHHHHHhcCCCccccC--C--HHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        622 GETLA--SRVAASQLATLGCPELIAR--T--HKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       622 g~~~~--~r~~~~~l~~~gl~~~ia~--~--~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      -....  ....+..+...|. .++..  +  .++..+...++  |++.+++++...
T Consensus       282 ~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~  334 (364)
T 1f0k_A          282 FQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW--SRETLLTMAERA  334 (364)
T ss_dssp             CCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHH
Confidence            54321  1222334555666 44443  2  67777777777  999998887653

>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*

Probab=98.65  E-value=3.6e-08  Score=105.24  Aligned_cols=146  Identities=12%  Similarity=0.038  Sum_probs=103.3

Q ss_pred             EEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChh
Q psy17691        476 IVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAV  555 (673)
Q Consensus       476 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (673)
                      +++++  +..|-.+.++++|.++.++.|+.+|++++                                         .++
T Consensus       199 i~~~~--~~~k~~~~ll~A~~~l~~~~p~~~lvivG-----------------------------------------~g~  235 (374)
T 2xci_A          199 IVAGS--IHTGEVEIILKAFKEIKKTYSSLKLILVP-----------------------------------------RHI  235 (374)
T ss_dssp             EEEEE--ECGGGHHHHHHHHHHHHTTCTTCEEEEEE-----------------------------------------SSG
T ss_pred             EEEEe--CCCchHHHHHHHHHHHHhhCCCcEEEEEC-----------------------------------------CCH
Confidence            34444  45687788999999999999999999988                                         344


Q ss_pred             hh-hhHHHHHHHcCCCC-------CeEEeccCcChHHHHHhcccccEE-ecC-CCCCCcchhhhhhhcCCceeec-CCCc
Q psy17691        556 GE-ANIQATAQALGLDQ-------HRILFSNVAAKEEHVRRGQLADVC-LDT-PLCNGHTTSMDVLWTGTPVVTL-PGET  624 (673)
Q Consensus       556 ~~-~~~~~~~~~~g~~~-------~rv~~~~~~~~~~~~~~~~~~Di~-Ld~-~p~~g~~t~~eal~~GvPvvt~-~g~~  624 (673)
                      .+ +.+++.+++.|+..       ++|.|.+..  ++....|..+||+ +-| +-.+||.+.+|||++|+|||+- ....
T Consensus       236 ~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~--~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~  313 (374)
T 2xci_A          236 ENAKIFEKKARDFGFKTSFFENLEGDVILVDRF--GILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHK  313 (374)
T ss_dssp             GGHHHHHHHHHHTTCCEEETTCCCSSEEECCSS--SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTT
T ss_pred             HHHHHHHHHHHHCCCceEEecCCCCcEEEECCH--HHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccC
Confidence            44 57888899999852       468887753  5778899999995 543 4346789999999999999962 1111


Q ss_pred             chhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        625 LASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       625 ~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      +..  ....+...|. -+...|.+++.+...+|.+| +.+++|...
T Consensus       314 ~~e--~~~~~~~~G~-l~~~~d~~~La~ai~~ll~d-~~r~~mg~~  355 (374)
T 2xci_A          314 VND--LKEFLEKEGA-GFEVKNETELVTKLTELLSV-KKEIKVEEK  355 (374)
T ss_dssp             SHH--HHHHHHHTTC-EEECCSHHHHHHHHHHHHHS-CCCCCHHHH
T ss_pred             hHH--HHHHHHHCCC-EEEeCCHHHHHHHHHHHHhH-HHHHHHHHH
Confidence            111  1111222343 13347899999999999999 877666543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.62  E-value=6.5e-07  Score=93.55  Aligned_cols=76  Identities=14%  Similarity=0.049  Sum_probs=62.6

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        142 ALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA  218 (673)
Q Consensus       142 al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  218 (673)
                      ++..+|.++.++..++..+...|++++|+..+++|++++|+ ..+|..+|.++...|++++|++.|++|+.++|...
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            34567888888888888888888888888888888888864 66778888888888888888888888888888764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.60  E-value=4.9e-07  Score=90.78  Aligned_cols=106  Identities=15%  Similarity=0.176  Sum_probs=71.8

Q ss_pred             hCCCCHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHH
Q psy17691        145 LCPTHADSLNNLANIKRE---Q--G------YIEEATRLYLKALEVFPE--FAAAHSNLASVLQQQ-----GKLTDALLH  206 (673)
Q Consensus       145 ~~p~~~~a~~~Lg~~~~~---~--g------~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~eA~~~  206 (673)
                      .+|+++++++..|.+...   .  |      ...+|...++++++++|+  +..+|..+|.+|...     |+.++|.++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            356666666666555432   1  2      246677777777777777  455777777777774     777777777


Q ss_pred             HHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Q psy17691        207 YKEAIRIQPSF-ADAYSNMGNTLKE-MQDIQGALQCYSRAIQINPG  250 (673)
Q Consensus       207 ~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~l~p~  250 (673)
                      |+++++++|+. ...++.+|..+.. +|++++|.++++++++.+|.
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            77777777764 7777777777766 47777777777777776554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.55  E-value=6.2e-07  Score=81.61  Aligned_cols=95  Identities=11%  Similarity=0.034  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691        167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQG---KLTDALLHYKEAIRIQ-P-SFADAYSNMGNTLKEMQDIQGALQCY  241 (673)
Q Consensus       167 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~eA~~~~  241 (673)
                      ..+.+.|++.++.++.+.++.+++|.++.+.+   +.++++..+++.++.+ | ++.++++++|..++++|+|++|++++
T Consensus        15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            44555566666666666666666666666665   4556666666666666 5 44667777777777777777777777


Q ss_pred             HHHHHhCCCCHHHHHHHHHH
Q psy17691        242 SRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       242 ~~Al~l~p~~~~a~~~La~~  261 (673)
                      +++|+++|++..+..-...+
T Consensus        95 ~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           95 RGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHH
Confidence            77777777776665554433

>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3

Probab=98.53  E-value=4.9e-07  Score=95.98  Aligned_cols=142  Identities=12%  Similarity=0.030  Sum_probs=101.2

Q ss_pred             CCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEee-ccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhh
Q psy17691        473 EDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLL-KFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWL  549 (673)
Q Consensus       473 ~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (673)
                      .+.++++++++..  |..+.+++++.++.++.|+.++++. +                                      
T Consensus       197 ~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g--------------------------------------  238 (376)
T 1v4v_A          197 EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVH--------------------------------------  238 (376)
T ss_dssp             SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECC--------------------------------------
T ss_pred             CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECC--------------------------------------
Confidence            4456677777653  4567789999999888899888764 3                                      


Q ss_pred             ccCChh-hhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecC--CCcch
Q psy17691        550 LKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP--GETLA  626 (673)
Q Consensus       550 ~~~~~~-~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~--g~~~~  626 (673)
                         ++. .++.+++.+   +. .++|.|.|.++..+....|..+|+++-+.   ||+ ++|||++|+|||+..  |.. .
T Consensus       239 ---~~~~~~~~l~~~~---~~-~~~v~~~g~~g~~~~~~~~~~ad~~v~~S---~g~-~lEA~a~G~PvI~~~~~~~~-~  306 (376)
T 1v4v_A          239 ---LNPVVREAVFPVL---KG-VRNFVLLDPLEYGSMAALMRASLLLVTDS---GGL-QEEGAALGVPVVVLRNVTER-P  306 (376)
T ss_dssp             ---SCHHHHHHHHHHH---TT-CTTEEEECCCCHHHHHHHHHTEEEEEESC---HHH-HHHHHHTTCCEEECSSSCSC-H
T ss_pred             ---CCHHHHHHHHHHh---cc-CCCEEEECCCCHHHHHHHHHhCcEEEECC---cCH-HHHHHHcCCCEEeccCCCcc-h
Confidence               222 244455543   22 36899999888788999999999996543   555 789999999999753  221 1


Q ss_pred             hhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        627 SRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       627 ~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      .     +. .-|..-++..|.++..+...++.+|++.+++++..
T Consensus       307 ~-----~~-~~g~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~~  344 (376)
T 1v4v_A          307 E-----GL-KAGILKLAGTDPEGVYRVVKGLLENPEELSRMRKA  344 (376)
T ss_dssp             H-----HH-HHTSEEECCSCHHHHHHHHHHHHTCHHHHHHHHHS
T ss_pred             h-----hh-cCCceEECCCCHHHHHHHHHHHHhChHhhhhhccc
Confidence            1     22 23422233369999999999999999999988754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.50  E-value=3.7e-07  Score=99.02  Aligned_cols=108  Identities=11%  Similarity=-0.008  Sum_probs=87.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHH
Q psy17691        158 NIKREQGYIEEATRLYLKALEV-----FPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRI-----QPSF---ADAY  221 (673)
Q Consensus       158 ~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~  221 (673)
                      .-+..+|++++|+..+++++++     .|++   ..++.++|.+|..+|+|++|+.++++++++     .|++   ...+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3456789999999999999976     3444   567899999999999999999999999976     3444   4578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHc
Q psy17691        222 SNMGNTLKEMQDIQGALQCYSRAIQI-----NPGFA---DAHSNLASIHKDS  265 (673)
Q Consensus       222 ~~lg~~~~~~g~~~eA~~~~~~Al~l-----~p~~~---~a~~~La~~~~~~  265 (673)
                      ++||.+|..+|++++|+.+|++|+++     -|+++   ++..+|+.+..++
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999986     45554   4556777776554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.50  E-value=2.5e-07  Score=100.40  Aligned_cols=108  Identities=11%  Similarity=0.050  Sum_probs=89.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHH
Q psy17691        124 ISVLLLIQVSEAEECYNTALRL-----CPTH---ADSLNNLANIKREQGYIEEATRLYLKALEV-----FPEF---AAAH  187 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~  187 (673)
                      ..+..+|++++|+..+++++++     .|++   ..++.++|.+|..+|+|++|+.++++++++     .|++   ...+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            4455789999999999999986     3455   557899999999999999999999999976     3444   5679


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHc
Q psy17691        188 SNLASVLQQQGKLTDALLHYKEAIRI-----QPSFA---DAYSNMGNTLKEM  231 (673)
Q Consensus       188 ~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~  231 (673)
                      ++||.+|..+|++++|+..|++|+++     .|+++   +++.+|+.+...+
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987     56665   4556677766543

>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}

Probab=98.50  E-value=7.3e-07  Score=95.77  Aligned_cols=155  Identities=15%  Similarity=0.119  Sum_probs=106.4

Q ss_pred             ccccccC-CC-CCcEEEecCCc---ccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhh
Q psy17691        464 TSRQQYG-LP-EDAIVYCNFNQ---LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIV  538 (673)
Q Consensus       464 ~~r~~~~-l~-~~~~~~~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (673)
                      ..|+++| ++ .+.+++.+.+|   ..|..+.+++++.++.++.|+.++++..+                          
T Consensus       218 ~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g--------------------------  271 (396)
T 3dzc_A          218 TLESQFPMLDASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVH--------------------------  271 (396)
T ss_dssp             HHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECC--------------------------
T ss_pred             HHHHHhCccCCCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeC--------------------------
Confidence            4567889 44 45555555544   23545688999999988889988876431                          


Q ss_pred             hhccCchhhhhccCChhhhhhHHHHHHH-cCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCce
Q psy17691        539 LKAVPNSILWLLKFPAVGEANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPV  617 (673)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPv  617 (673)
                                    +++   .+++.+++ .+. .++|.|.+.+++.++..+|..||+++-+.   ||+ ++||+++|+||
T Consensus       272 --------------~~~---~~~~~l~~~~~~-~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---Gg~-~~EA~a~G~Pv  329 (396)
T 3dzc_A          272 --------------LNP---NVREPVNKLLKG-VSNIVLIEPQQYLPFVYLMDRAHIILTDS---GGI-QEEAPSLGKPV  329 (396)
T ss_dssp             --------------BCH---HHHHHHHHHTTT-CTTEEEECCCCHHHHHHHHHHCSEEEESC---SGG-GTTGGGGTCCE
T ss_pred             --------------CCh---HHHHHHHHHHcC-CCCEEEeCCCCHHHHHHHHHhcCEEEECC---ccH-HHHHHHcCCCE
Confidence                          111   12333333 243 36899999999889999999999996432   544 49999999999


Q ss_pred             eecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        618 VTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       618 vt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      |+....+  +|.  .+ ...|-.-+|..+.++.++...+|..|++.+++|+...
T Consensus       330 V~~~~~~--~~~--e~-v~~G~~~lv~~d~~~l~~ai~~ll~d~~~~~~m~~~~  378 (396)
T 3dzc_A          330 LVMRETT--ERP--EA-VAAGTVKLVGTNQQQICDALSLLLTDPQAYQAMSQAH  378 (396)
T ss_dssp             EECCSSC--SCH--HH-HHHTSEEECTTCHHHHHHHHHHHHHCHHHHHHHHTSC
T ss_pred             EEccCCC--cch--HH-HHcCceEEcCCCHHHHHHHHHHHHcCHHHHHHHhhcc
Confidence            9864221  221  12 2346444555579999999999999999999988643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.49  E-value=9.9e-07  Score=80.25  Aligned_cols=97  Identities=12%  Similarity=-0.050  Sum_probs=87.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691        131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQG---YIEEATRLYLKALEVF-P-EFAAAHSNLASVLQQQGKLTDALL  205 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g---~~~eA~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~eA~~  205 (673)
                      ....+.+.|++.++.++.+.++.+++|+++.+.+   ++++++..++..++.+ | ++.+++++||..+++.|+|++|.+
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            5677888899999999999999999999999988   7779999999999998 7 568999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHH
Q psy17691        206 HYKEAIRIQPSFADAYSNMGNT  227 (673)
Q Consensus       206 ~~~~al~~~p~~~~~~~~lg~~  227 (673)
                      +++++++++|++..+....-.+
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHH
Confidence            9999999999998887655444

>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}

Probab=98.49  E-value=1.8e-06  Score=80.87  Aligned_cols=97  Identities=10%  Similarity=0.153  Sum_probs=75.0

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccC---CH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---TH  647 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~  647 (673)
                      +++|.|.++++..+.+. |..||+++.   .+|++|++||+++|+|+|+.+-. .-...-+..+...|..-++-.   |.
T Consensus        67 ~~~v~~~~~~~~~~~l~-~~~ad~~I~---~~G~~t~~Ea~~~G~P~i~~p~~-~~Q~~na~~l~~~g~g~~~~~~~~~~  141 (170)
T 2o6l_A           67 GLNTRLYKWIPQNDLLG-HPKTRAFIT---HGGANGIYEAIYHGIPMVGIPLF-ADQPDNIAHMKARGAAVRVDFNTMSS  141 (170)
T ss_dssp             CTTEEEESSCCHHHHHT-STTEEEEEE---CCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHTTTSEEECCTTTCCH
T ss_pred             CCcEEEecCCCHHHHhc-CCCcCEEEE---cCCccHHHHHHHcCCCEEeccch-hhHHHHHHHHHHcCCeEEeccccCCH
Confidence            46899999999877765 489999995   57899999999999999998753 112334566777776554432   78


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhhc
Q psy17691        648 KEYQDIAIRLGTDRDYCEKALLYHE  672 (673)
Q Consensus       648 ~~yv~~a~~la~d~~~~~~~~~~~~  672 (673)
                      ++..+...++.+|++.++++++..+
T Consensus       142 ~~l~~~i~~ll~~~~~~~~a~~~~~  166 (170)
T 2o6l_A          142 TDLLNALKRVINDPSYKENVMKLSR  166 (170)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            9999999999999999988876543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.48  E-value=6.1e-07  Score=75.26  Aligned_cols=71  Identities=18%  Similarity=0.049  Sum_probs=37.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        146 CPTHADSLNNLANIKREQGY---IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS  216 (673)
Q Consensus       146 ~p~~~~a~~~Lg~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  216 (673)
                      +|++++++..+|.+++..++   .++|...++++++++|++..+++.+|..+++.|+|++|+.+++++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            34555555555555544333   455555555555555555555555555555555555555555555555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.47  E-value=7.2e-07  Score=74.81  Aligned_cols=72  Identities=18%  Similarity=0.095  Sum_probs=68.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        180 FPEFAAAHSNLASVLQQQGK---LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       180 ~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~  251 (673)
                      +|+++..+..+|.+++..++   .++|...++++++++|+++.++..+|..+.+.|+|++|+.+|+++++.+|..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            68999999999999987766   7999999999999999999999999999999999999999999999999884

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.47  E-value=5e-07  Score=97.93  Aligned_cols=93  Identities=12%  Similarity=-0.003  Sum_probs=78.8

Q ss_pred             HcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHH
Q psy17691        162 EQGYIEEATRLYLKALEV-----FPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRI-----QPSF---ADAYSNMG  225 (673)
Q Consensus       162 ~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~lg  225 (673)
                      ..|+|++|+..|++++++     .|++   ..++.+||.+|..+|+|++|+.++++++++     .|++   +..+++||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            468899999999999986     4555   567899999999999999999999999986     3444   45789999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Q psy17691        226 NTLKEMQDIQGALQCYSRAIQI-----NPGFADA  254 (673)
Q Consensus       226 ~~~~~~g~~~eA~~~~~~Al~l-----~p~~~~a  254 (673)
                      .+|..+|++++|+..|++|+++     -|+++..
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            9999999999999999999986     4666654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.45  E-value=6.1e-07  Score=97.20  Aligned_cols=93  Identities=13%  Similarity=-0.061  Sum_probs=80.3

Q ss_pred             cCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHH
Q psy17691        129 LIQVSEAEECYNTALRL-----CPTH---ADSLNNLANIKREQGYIEEATRLYLKALEV-----FPEF---AAAHSNLAS  192 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~-----~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~la~  192 (673)
                      .|+|++|+..|++++++     .|++   ..++.+||.+|..+|+|++|+.++++++++     .|++   ...+++||.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            57899999999999996     4555   457889999999999999999999999986     3444   567999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q psy17691        193 VLQQQGKLTDALLHYKEAIRI-----QPSFADAY  221 (673)
Q Consensus       193 ~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~  221 (673)
                      +|..+|++++|+..|++|+++     .|+++..-
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            999999999999999999987     57776543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.42  E-value=2.1e-06  Score=73.41  Aligned_cols=76  Identities=21%  Similarity=0.240  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVF-------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS  222 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  222 (673)
                      +.-.+.+|..++.+++|..|+.+|++|++..       +....++.++|.++.++|++++|+.+++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            3445566666666666666666666666542       123455555555555555555555555555555555555555


Q ss_pred             HHH
Q psy17691        223 NMG  225 (673)
Q Consensus       223 ~lg  225 (673)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.42  E-value=3.9e-06  Score=95.98  Aligned_cols=161  Identities=8%  Similarity=-0.026  Sum_probs=100.0

Q ss_pred             HHhcCCCChhHHHHHHHHH-HcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Q psy17691        109 CYALSPDDGTTFSYIISVL-LLIQVSEAE-ECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV-------  179 (673)
Q Consensus       109 ~~~l~p~~~~~~~~~~~~~-~~g~~~~A~-~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-------  179 (673)
                      ++...|..+..|.....+. ..|+.++|. ..|++|+...|.+...|..++......|++++|.+.|+++++.       
T Consensus       335 aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~  414 (679)
T 4e6h_A          335 AAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA  414 (679)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence            4445566666664444433 356666665 7777777777766666667777777777777777777776654       


Q ss_pred             ----CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHH
Q psy17691        180 ----FPE-----------FAAAHSNLASVLQQQGKLTDALLHYKEAIRI-QPSFADAYSNMGNTLKEMQD-IQGALQCYS  242 (673)
Q Consensus       180 ----~p~-----------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~  242 (673)
                          .|.           ...+|..++....+.|+.+.|.+.|.+|++. .+.....|...+.+..+.++ .+.|...|+
T Consensus       415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife  494 (679)
T 4e6h_A          415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLE  494 (679)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred             hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence                132           2345666666666666677777777777665 33344556555555555443 667777777


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        243 RAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       243 ~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ++++..|+++..|..++......|+.+
T Consensus       495 ~~Lk~~p~~~~~w~~y~~fe~~~~~~~  521 (679)
T 4e6h_A          495 LGLKYFATDGEYINKYLDFLIYVNEES  521 (679)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence            777777776666666666666666544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.41  E-value=2.4e-06  Score=73.12  Aligned_cols=76  Identities=16%  Similarity=0.198  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQ-------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      .-.+.+|..++..|+|..|+..|++|++..       .....++.++|.++.++|++++|+.+++++++++|++..+..|
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            345677778888888888888888777752       2346677778888888888888888888888888887777777


Q ss_pred             HHH
Q psy17691        258 LAS  260 (673)
Q Consensus       258 La~  260 (673)
                      ++.
T Consensus        86 ~~~   88 (104)
T 2v5f_A           86 LKY   88 (104)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*

Probab=98.39  E-value=1.1e-06  Score=96.59  Aligned_cols=181  Identities=12%  Similarity=0.021  Sum_probs=112.5

Q ss_pred             eeccCccccccccccccCcccCcccccccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccC----eeEEee
Q psy17691        437 VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPN----SILWLL  510 (673)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~  510 (673)
                      ++.||+.+..+.+....+. . .. ....|+++|   +..++++++|+.  |..+..++++.++++..|+    .+|+++
T Consensus       223 vip~GID~~~f~~~~~~~~-~-~~-~~~lr~~~~---~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~v  296 (482)
T 1uqt_A          223 VYPIGIEPKEIAKQAAGPL-P-PK-LAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQI  296 (482)
T ss_dssp             ECCCCCCHHHHHHHHHSCC-C-HH-HHHHHHHTT---TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEE
T ss_pred             EEeccCCHHHHHHHhcCcc-h-HH-HHHHHHHhC---CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEE
Confidence            4677876654432211000 0 00 124566776   456677778765  9999999999999999986    568877


Q ss_pred             ccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhh----hhhHHHHHHH----cCCC-CCeEE-eccCc
Q psy17691        511 KFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVG----EANIQATAQA----LGLD-QHRIL-FSNVA  580 (673)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~g~~-~~rv~-~~~~~  580 (673)
                      +.+..+                                    +++.    ++.+++...+    .|.. -..|+ |.|.+
T Consensus       297 G~p~~~------------------------------------~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v  340 (482)
T 1uqt_A          297 APTSRG------------------------------------DVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHF  340 (482)
T ss_dssp             CCBCST------------------------------------TSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCC
T ss_pred             ECCCcc------------------------------------chHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCC
Confidence            732111                                    1222    2233333332    2331 12466 56889


Q ss_pred             ChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCC-----ceeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHH
Q psy17691        581 AKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGT-----PVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQD  652 (673)
Q Consensus       581 ~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~Gv-----Pvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~  652 (673)
                      +.++..++|+.+|||+- |.-++=|.|.+|||++|+     |||+-.-.....        .+. ..++.  .|.++..+
T Consensus       341 ~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~--------~l~-~g~lv~p~d~~~lA~  411 (482)
T 1uqt_A          341 DRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAAN--------ELT-SALIVNPYDRDEVAA  411 (482)
T ss_dssp             CHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGG--------TCT-TSEEECTTCHHHHHH
T ss_pred             CHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHH--------HhC-CeEEECCCCHHHHHH
Confidence            99999999999999955 567788999999999997     666533111111        111 33444  38899999


Q ss_pred             HHHHhcCC-HHHHHHHH
Q psy17691        653 IAIRLGTD-RDYCEKAL  668 (673)
Q Consensus       653 ~a~~la~d-~~~~~~~~  668 (673)
                      ...++.++ ++.++++.
T Consensus       412 ai~~lL~~~~~~r~~~~  428 (482)
T 1uqt_A          412 ALDRALTMSLAERISRH  428 (482)
T ss_dssp             HHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHH
Confidence            88888885 55555443

>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*

Probab=98.34  E-value=1.3e-06  Score=93.28  Aligned_cols=142  Identities=14%  Similarity=0.186  Sum_probs=102.0

Q ss_pred             CCcEEEecCCcc--cccC-hhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhh
Q psy17691        473 EDAIVYCNFNQL--YKID-PSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWL  549 (673)
Q Consensus       473 ~~~~~~~~~~~~--~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (673)
                      ...+++.++++.  .|-. ...++...+. +..|+.++++..                                      
T Consensus       217 ~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~--------------------------------------  257 (391)
T 3tsa_A          217 SARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAV--------------------------------------  257 (391)
T ss_dssp             SSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEEC--------------------------------------
T ss_pred             CCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEE--------------------------------------
Confidence            445677777766  3344 7788888888 889998888765                                      


Q ss_pred             ccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhh
Q psy17691        550 LKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRV  629 (673)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~  629 (673)
                         .+...+.+.      ++ +++|.|.+..+..+.+   ..||+++-   .+|+.|++||+++|+|+|+++-. .-...
T Consensus       258 ---~~~~~~~l~------~~-~~~v~~~~~~~~~~ll---~~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~-~~q~~  320 (391)
T 3tsa_A          258 ---PPEHRALLT------DL-PDNARIAESVPLNLFL---RTCELVIC---AGGSGTAFTATRLGIPQLVLPQY-FDQFD  320 (391)
T ss_dssp             ---CGGGGGGCT------TC-CTTEEECCSCCGGGTG---GGCSEEEE---CCCHHHHHHHHHTTCCEEECCCS-TTHHH
T ss_pred             ---CCcchhhcc------cC-CCCEEEeccCCHHHHH---hhCCEEEe---CCCHHHHHHHHHhCCCEEecCCc-ccHHH
Confidence               111111121      33 4789999998865544   78999993   46667999999999999998542 22334


Q ss_pred             HHHHHHhcCCCccccC-----CHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        630 AASQLATLGCPELIAR-----THKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       630 ~~~~l~~~gl~~~ia~-----~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      .+..+...|..-++..     |.++..+...++.+|++.+++++..
T Consensus       321 ~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~  366 (391)
T 3tsa_A          321 YARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKL  366 (391)
T ss_dssp             HHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHH
T ss_pred             HHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            4556777787666654     7899999999999999999888754

>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*

Probab=98.33  E-value=6.2e-07  Score=96.67  Aligned_cols=121  Identities=9%  Similarity=0.011  Sum_probs=91.5

Q ss_pred             EEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChh
Q psy17691        476 IVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAV  555 (673)
Q Consensus       476 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (673)
                      .++++++++.+.-.-    +..+.+..|+.+|+++|                                         +++
T Consensus       223 ~~i~~vGrl~~~Kg~----~~~l~~~~~~~~l~ivG-----------------------------------------~g~  257 (406)
T 2hy7_A          223 IHAVAVGSMLFDPEF----FVVASKAFPQVTFHVIG-----------------------------------------SGM  257 (406)
T ss_dssp             EEEEEECCTTBCHHH----HHHHHHHCTTEEEEEES-----------------------------------------CSS
T ss_pred             cEEEEEeccccccCH----HHHHHHhCCCeEEEEEe-----------------------------------------Cch
Confidence            667777777643222    67777788999999988                                         222


Q ss_pred             hhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhh-------hcCCceeecCCCcchh
Q psy17691        556 GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVL-------WTGTPVVTLPGETLAS  627 (673)
Q Consensus       556 ~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal-------~~GvPvvt~~g~~~~~  627 (673)
                              .++.|+ .++|+|+|.++.++....|+.+|+++-|. .++.|++.+|||       ++|+|||+-..     
T Consensus       258 --------~~~~~l-~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~-----  323 (406)
T 2hy7_A          258 --------GRHPGY-GDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA-----  323 (406)
T ss_dssp             --------CCCTTC-CTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG-----
T ss_pred             --------HHhcCC-CCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh-----
Confidence                    244577 48999999999999999999999997765 667899999999       99999998543     


Q ss_pred             hhHHHHHHhcCCCccc---cCCHHHHHHHHHHhcCCHH
Q psy17691        628 RVAASQLATLGCPELI---ARTHKEYQDIAIRLGTDRD  662 (673)
Q Consensus       628 r~~~~~l~~~gl~~~i---a~~~~~yv~~a~~la~d~~  662 (673)
                            +. -|-..++   ..|.+++.+...++.+|++
T Consensus       324 ------v~-~~~~G~l~v~~~d~~~la~ai~~ll~~~~  354 (406)
T 2hy7_A          324 ------VV-GPYKSRFGYTPGNADSVIAAITQALEAPR  354 (406)
T ss_dssp             ------GT-CSCSSEEEECTTCHHHHHHHHHHHHHCCC
T ss_pred             ------cc-cCcceEEEeCCCCHHHHHHHHHHHHhCcc
Confidence                  11 1333433   3689999999888887765

>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}

Probab=98.26  E-value=5.5e-06  Score=89.62  Aligned_cols=143  Identities=18%  Similarity=0.224  Sum_probs=96.3

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeE-EeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSIL-WLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      .+.++|.++++..+...+.+....+.++..|+.++ ++++                                        
T Consensus       231 ~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G----------------------------------------  270 (430)
T 2iyf_A          231 AEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIG----------------------------------------  270 (430)
T ss_dssp             CSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC----------------------------------------
T ss_pred             CCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeC----------------------------------------
Confidence            44677888887775556666666666766666666 4444                                        


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA  631 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~  631 (673)
                       ++...+.+.      .+ +++|.|.|+.+..   ..|..+|+++-   .+|++|++||+++|+|+|+.+-.. -....+
T Consensus       271 -~~~~~~~l~------~~-~~~v~~~~~~~~~---~~l~~ad~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-~q~~~a  335 (430)
T 2iyf_A          271 -RKVTPAELG------EL-PDNVEVHDWVPQL---AILRQADLFVT---HAGAGGSQEGLATATPMIAVPQAV-DQFGNA  335 (430)
T ss_dssp             ----CGGGGC------SC-CTTEEEESSCCHH---HHHTTCSEEEE---CCCHHHHHHHHHTTCCEEECCCSH-HHHHHH
T ss_pred             -CCCChHHhc------cC-CCCeEEEecCCHH---HHhhccCEEEE---CCCccHHHHHHHhCCCEEECCCcc-chHHHH
Confidence             111111121      23 4789999999866   45668999875   457789999999999999986532 122234


Q ss_pred             HHHHhcCCCccccC---CHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        632 SQLATLGCPELIAR---THKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       632 ~~l~~~gl~~~ia~---~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      ..+...|..-++..   |.++..+...++.+|++.+++++..
T Consensus       336 ~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~  377 (430)
T 2iyf_A          336 DMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRI  377 (430)
T ss_dssp             HHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            55666676544432   7899999999999999988877653

>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*

Probab=98.25  E-value=3e-06  Score=91.03  Aligned_cols=93  Identities=17%  Similarity=0.191  Sum_probs=71.2

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccC---CH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---TH  647 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~  647 (673)
                      +++|.|.|..+..   ..+..+|+++.   .+|++|++|||++|+|||+.+-. .-....+..+...|..-++..   |.
T Consensus       291 ~~~v~~~~~~~~~---~~l~~ad~~v~---~~g~~t~~Ea~a~G~P~v~~p~~-~~q~~~~~~v~~~g~g~~~~~~~~~~  363 (412)
T 3otg_A          291 PANVRLESWVPQA---ALLPHVDLVVH---HGGSGTTLGALGAGVPQLSFPWA-GDSFANAQAVAQAGAGDHLLPDNISP  363 (412)
T ss_dssp             CTTEEEESCCCHH---HHGGGCSEEEE---SCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHHTSEEECCGGGCCH
T ss_pred             CCcEEEeCCCCHH---HHHhcCcEEEE---CCchHHHHHHHHhCCCEEecCCc-hhHHHHHHHHHHcCCEEecCcccCCH
Confidence            4789999998644   45567999983   35669999999999999998654 222334556777777666543   88


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        648 KEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       648 ~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      ++..+...+|.+|++.+++++..
T Consensus       364 ~~l~~ai~~ll~~~~~~~~~~~~  386 (412)
T 3otg_A          364 DSVSGAAKRLLAEESYRAGARAV  386 (412)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHH
Confidence            99999999999999999888654

>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*

Probab=98.25  E-value=3.1e-06  Score=92.43  Aligned_cols=167  Identities=9%  Similarity=-0.011  Sum_probs=105.8

Q ss_pred             eeccCccccccccccccCcccCcccccccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCe---eEEeec
Q psy17691        437 VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNS---ILWLLK  511 (673)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~---~l~~~~  511 (673)
                      ++.+|+.+..+.+...       ......|+++|   +..++.+++|+.  |..+..++++ +++++.|+.   +|++++
T Consensus       253 viP~GID~~~f~~~~~-------~~~~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg  321 (496)
T 3t5t_A          253 TMPLGYSPLTLDGRNP-------QLPEGIEEWAD---GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRM  321 (496)
T ss_dssp             ECCCCBCGGGC----C-------CCCTTHHHHHT---TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEE
T ss_pred             EeccEeCHHHhchhhH-------HHHHHHHHHhC---CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEE
Confidence            3677887766644321       11134567777   455666667765  9999999999 999999974   577666


Q ss_pred             cCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHHH--------cCCCCCeEEeccCcChH
Q psy17691        512 FPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQA--------LGLDQHRILFSNVAAKE  583 (673)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~rv~~~~~~~~~  583 (673)
                      .|..+                                    +++..+.+++.+.+        .|..  +|+|++..+.+
T Consensus       322 ~psr~------------------------------------~~~~y~~l~~~l~~lv~~in~~~g~~--~V~f~g~v~~~  363 (496)
T 3t5t_A          322 NPNRL------------------------------------YVPANADYVHRVETAVAEANAELGSD--TVRIDNDNDVN  363 (496)
T ss_dssp             ECCCT------------------------------------TSHHHHHHHHHHHHHHHHHHHHHCTT--SEEEEECCCHH
T ss_pred             CCCCC------------------------------------CchHHHHHHHHHHHHHHHhccccCCc--CEEEeCCCCHH
Confidence            33211                                    12222333333322        2543  79999999999


Q ss_pred             HHHHhcccccEEecC-CCCCCcchhhhhhhcC----CceeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHH
Q psy17691        584 EHVRRGQLADVCLDT-PLCNGHTTSMDVLWTG----TPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIR  656 (673)
Q Consensus       584 ~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~G----vPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~  656 (673)
                      +..++|+.+|||+-| .-.+=|.+.+|||++|    ++|++-.+.      ++..|   |-..++.  .|.++..+...+
T Consensus       364 el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aG------a~~~l---~~~allVnP~D~~~lA~AI~~  434 (496)
T 3t5t_A          364 HTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCG------AAEVL---GEYCRSVNPFDLVEQAEAISA  434 (496)
T ss_dssp             HHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBT------THHHH---GGGSEEECTTBHHHHHHHHHH
T ss_pred             HHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCC------CHHHh---CCCEEEECCCCHHHHHHHHHH
Confidence            999999999999765 4667899999999995    444442221      11223   2123333  378888887777


Q ss_pred             hcCCH
Q psy17691        657 LGTDR  661 (673)
Q Consensus       657 la~d~  661 (673)
                      +.+++
T Consensus       435 aL~m~  439 (496)
T 3t5t_A          435 ALAAG  439 (496)
T ss_dssp             HHHCC
T ss_pred             HHcCC
Confidence            76654

>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}

Probab=98.23  E-value=5e-06  Score=89.44  Aligned_cols=146  Identities=13%  Similarity=0.132  Sum_probs=102.8

Q ss_pred             CCCcEEEecCCccc---ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhh
Q psy17691        472 PEDAIVYCNFNQLY---KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILW  548 (673)
Q Consensus       472 ~~~~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (673)
                      +.+.+++.+.++..   |..+.+++++.++.++.|+.++++..+                                    
T Consensus       222 ~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~------------------------------------  265 (403)
T 3ot5_A          222 GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMH------------------------------------  265 (403)
T ss_dssp             TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECC------------------------------------
T ss_pred             cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecC------------------------------------
Confidence            45566777777643   434788999999998899988876531                                    


Q ss_pred             hccCChhhhhhHHHHHHH-cCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchh
Q psy17691        549 LLKFPAVGEANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLAS  627 (673)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~-~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~  627 (673)
                          +++   .+++.+++ .+. .++|.|.+.+++.++..+|..||+++-..   ||.+ +||+++|+|||+.+..  .+
T Consensus       266 ----~~~---~~~~~l~~~~~~-~~~v~l~~~l~~~~~~~l~~~ad~vv~~S---Gg~~-~EA~a~g~PvV~~~~~--~~  331 (403)
T 3ot5_A          266 ----LNP---AVREKAMAILGG-HERIHLIEPLDAIDFHNFLRKSYLVFTDS---GGVQ-EEAPGMGVPVLVLRDT--TE  331 (403)
T ss_dssp             ----SCH---HHHHHHHHHHTT-CTTEEEECCCCHHHHHHHHHHEEEEEECC---HHHH-HHGGGTTCCEEECCSS--CS
T ss_pred             ----CCH---HHHHHHHHHhCC-CCCEEEeCCCCHHHHHHHHHhcCEEEECC---ccHH-HHHHHhCCCEEEecCC--Cc
Confidence                111   12233332 344 36899999999999999999999996432   5555 9999999999997421  12


Q ss_pred             hhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        628 RVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       628 r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      |.-  .. ..|-.-+|..|.++.++...++..|++.+++++..
T Consensus       332 ~~e--~v-~~g~~~lv~~d~~~l~~ai~~ll~~~~~~~~m~~~  371 (403)
T 3ot5_A          332 RPE--GI-EAGTLKLIGTNKENLIKEALDLLDNKESHDKMAQA  371 (403)
T ss_dssp             CHH--HH-HHTSEEECCSCHHHHHHHHHHHHHCHHHHHHHHHS
T ss_pred             chh--he-eCCcEEEcCCCHHHHHHHHHHHHcCHHHHHHHHhh
Confidence            222  12 44633345458999999999999999999988754

>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}

Probab=98.23  E-value=4.4e-06  Score=89.18  Aligned_cols=144  Identities=13%  Similarity=0.194  Sum_probs=99.3

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      ...+++.++++..+...+.+....+.++..|.-.++..+                                         
T Consensus       230 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------------------------------------  268 (402)
T 3ia7_A          230 DAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIG-----------------------------------------  268 (402)
T ss_dssp             TCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECC-----------------------------------------
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeC-----------------------------------------
Confidence            445777777777766666777777777777633333343                                         


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAAS  632 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~  632 (673)
                      ++...+.+.      .+ +++|.+.+..+..   ..+..||+++.   .+|+.|++||+++|+|+|+++-...-....+.
T Consensus       269 ~~~~~~~~~------~~-~~~v~~~~~~~~~---~ll~~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~  335 (402)
T 3ia7_A          269 GFLDPAVLG------PL-PPNVEAHQWIPFH---SVLAHARACLT---HGTTGAVLEAFAAGVPLVLVPHFATEAAPSAE  335 (402)
T ss_dssp             TTSCGGGGC------SC-CTTEEEESCCCHH---HHHTTEEEEEE---CCCHHHHHHHHHTTCCEEECGGGCGGGHHHHH
T ss_pred             CcCChhhhC------CC-CCcEEEecCCCHH---HHHhhCCEEEE---CCCHHHHHHHHHhCCCEEEeCCCcccHHHHHH
Confidence            111111111      12 5789999998876   55557999884   36668899999999999988652233445566


Q ss_pred             HHHhcCCCccccC---CHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        633 QLATLGCPELIAR---THKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       633 ~l~~~gl~~~ia~---~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      .+...|..-.+..   |.++..+...+|.+|++.+++++..
T Consensus       336 ~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~  376 (402)
T 3ia7_A          336 RVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRM  376 (402)
T ss_dssp             HHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            7788887665543   7899999999999999988887654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.21  E-value=7.7e-05  Score=82.30  Aligned_cols=60  Identities=12%  Similarity=-0.057  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy17691        132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS  192 (673)
Q Consensus       132 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  192 (673)
                      .+.....|++++...|..+.+|...+..+.+.|+.++|...|++|+.. |.+...|...+.
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~  254 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGL  254 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHh
Confidence            345678999999999999999999999999999999999999999999 988666655444

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.19  E-value=6.1e-06  Score=82.84  Aligned_cols=111  Identities=16%  Similarity=0.091  Sum_probs=91.2

Q ss_pred             HHHHHhcCCCChhHHHHHHHHH----H--------cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCH
Q psy17691        106 EIFCYALSPDDGTTFSYIISVL----L--------LIQVSEAEECYNTALRLCPT--HADSLNNLANIKREQ-----GYI  166 (673)
Q Consensus       106 ~~~~~~l~p~~~~~~~~~~~~~----~--------~g~~~~A~~~~~~al~~~p~--~~~a~~~Lg~~~~~~-----g~~  166 (673)
                      +......++++...+...+...    .        .+...+|...++++++++|+  +..+|..+|.+|...     |+.
T Consensus       141 ~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~  220 (301)
T 3u64_A          141 HKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGM  220 (301)
T ss_dssp             HHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCH
T ss_pred             HHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCH
Confidence            3334445677766654333221    1        12468999999999999999  567999999999995     999


Q ss_pred             HHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC
Q psy17691        167 EEATRLYLKALEVFPEF-AAAHSNLASVLQQQ-GKLTDALLHYKEAIRIQPS  216 (673)
Q Consensus       167 ~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~  216 (673)
                      ++|.++|++|++++|+. ...++.+|..+... |++++|.++++++++..|.
T Consensus       221 ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          221 EKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            99999999999999975 99999999999884 9999999999999998876

>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*

Probab=98.12  E-value=5.6e-06  Score=88.62  Aligned_cols=94  Identities=19%  Similarity=0.200  Sum_probs=69.4

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccC---CH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---TH  647 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~  647 (673)
                      +++|.|.+..+..+.+.   .||+++   ..+|++|++|||++|+|+|+++-. .-....+..+...|..-++-.   |.
T Consensus       283 ~~~v~~~~~~~~~~ll~---~ad~~v---~~gG~~t~~Ea~~~G~P~v~~p~~-~~q~~~a~~~~~~g~g~~~~~~~~~~  355 (398)
T 4fzr_A          283 PEGVLAAGQFPLSAIMP---ACDVVV---HHGGHGTTLTCLSEGVPQVSVPVI-AEVWDSARLLHAAGAGVEVPWEQAGV  355 (398)
T ss_dssp             CTTEEEESCCCHHHHGG---GCSEEE---ECCCHHHHHHHHHTTCCEEECCCS-GGGHHHHHHHHHTTSEEECC------
T ss_pred             CCcEEEeCcCCHHHHHh---hCCEEE---ecCCHHHHHHHHHhCCCEEecCCc-hhHHHHHHHHHHcCCEEecCcccCCH
Confidence            57899999987665555   599999   367779999999999999998652 223344556777787666543   67


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        648 KEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       648 ~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ++..+...++.+|++.+++++...
T Consensus       356 ~~l~~ai~~ll~~~~~~~~~~~~~  379 (398)
T 4fzr_A          356 ESVLAACARIRDDSSYVGNARRLA  379 (398)
T ss_dssp             -CHHHHHHHHHHCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHH
Confidence            888888889999999998887643

>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}

Probab=98.09  E-value=2.4e-05  Score=83.17  Aligned_cols=92  Identities=14%  Similarity=0.205  Sum_probs=68.4

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccC---CH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---TH  647 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~  647 (673)
                      +++|.+ ++.+..++   +..+|+|+-.   +|+.|++||+++|+|+|+.+-.. -....+..+...|..-++..   |.
T Consensus       263 ~~~v~~-~~~~~~~~---l~~~d~~v~~---~G~~t~~Ea~~~G~P~v~~p~~~-dq~~~a~~~~~~g~g~~~~~~~~~~  334 (384)
T 2p6p_A          263 VPQARV-GWTPLDVV---APTCDLLVHH---AGGVSTLTGLSAGVPQLLIPKGS-VLEAPARRVADYGAAIALLPGEDST  334 (384)
T ss_dssp             CTTSEE-ECCCHHHH---GGGCSEEEEC---SCTTHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHHTSEEECCTTCCCH
T ss_pred             CCceEE-cCCCHHHH---HhhCCEEEeC---CcHHHHHHHHHhCCCEEEccCcc-cchHHHHHHHHCCCeEecCcCCCCH
Confidence            478899 99887665   4679999963   67789999999999999997521 11233445666676544432   78


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        648 KEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       648 ~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      ++..+...++.+|++.+++++.-
T Consensus       335 ~~l~~~i~~ll~~~~~~~~~~~~  357 (384)
T 2p6p_A          335 EAIADSCQELQAKDTYARRAQDL  357 (384)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHH
Confidence            88888888999999998887654

>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*

Probab=98.08  E-value=2.7e-05  Score=83.58  Aligned_cols=142  Identities=15%  Similarity=0.239  Sum_probs=98.7

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEe-eccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWL-LKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      ...+++.++++..+...+.+....+.++..| .++++ .+                                        
T Consensus       246 ~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~g----------------------------------------  284 (415)
T 3rsc_A          246 DLPVVLVSLGTTFNDRPGFFRDCARAFDGQP-WHVVMTLG----------------------------------------  284 (415)
T ss_dssp             CCCEEEEECTTTSCCCHHHHHHHHHHHTTSS-CEEEEECT----------------------------------------
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHHhcCC-cEEEEEeC----------------------------------------
Confidence            4467788888776666667777777777777 45544 33                                        


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA  631 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~  631 (673)
                       ++...+.+.      .+ +++|.+.+..+..+++.   .||+++.   .+|+.|++||+++|+|+|.++- ..-....+
T Consensus       285 -~~~~~~~l~------~~-~~~v~~~~~~~~~~ll~---~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~-~~~q~~~a  349 (415)
T 3rsc_A          285 -GQVDPAALG------DL-PPNVEAHRWVPHVKVLE---QATVCVT---HGGMGTLMEALYWGRPLVVVPQ-SFDVQPMA  349 (415)
T ss_dssp             -TTSCGGGGC------CC-CTTEEEESCCCHHHHHH---HEEEEEE---SCCHHHHHHHHHTTCCEEECCC-SGGGHHHH
T ss_pred             -CCCChHHhc------CC-CCcEEEEecCCHHHHHh---hCCEEEE---CCcHHHHHHHHHhCCCEEEeCC-cchHHHHH
Confidence             111111111      23 47899999998775554   5999884   3666899999999999999864 22234445


Q ss_pred             HHHHhcCCCccccC---CHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        632 SQLATLGCPELIAR---THKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       632 ~~l~~~gl~~~ia~---~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      ..+...|..-.+..   |.++..+...++.+|++.+++++..
T Consensus       350 ~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~  391 (415)
T 3rsc_A          350 RRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAM  391 (415)
T ss_dssp             HHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            67777787655543   7899999999999999998887653

>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}

Probab=97.97  E-value=6.7e-06  Score=87.76  Aligned_cols=149  Identities=11%  Similarity=0.076  Sum_probs=103.6

Q ss_pred             ccccccCCCCCcEEEecCCccc-----ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhh
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQLY-----KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIV  538 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~~~-----K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (673)
                      ..|+++|++.+.+++.+.++..     |..+.+++++.++.++. +..+++..                           
T Consensus       193 ~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~-~~~vv~p~---------------------------  244 (385)
T 4hwg_A          193 DILDKLSLTPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY-NFLIIFST---------------------------  244 (385)
T ss_dssp             CHHHHTTCCTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH-CCEEEEEE---------------------------
T ss_pred             HHHHHcCCCcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC-CeEEEEEC---------------------------
Confidence            4567889987777777777654     34457788888887655 55555422                           


Q ss_pred             hhccCchhhhhccCChhhhhhHHHHHHHc-C-CC-CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCC
Q psy17691        539 LKAVPNSILWLLKFPAVGEANIQATAQAL-G-LD-QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGT  615 (673)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-~~-~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~Gv  615 (673)
                                    .    .++++.+++. | +. .++|.+.+.++..++..++..+|+++-.   +|| .+.||+++|+
T Consensus       245 --------------~----p~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~---SGg-v~~EA~alG~  302 (385)
T 4hwg_A          245 --------------H----PRTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSD---SGT-ITEEASILNL  302 (385)
T ss_dssp             --------------C----HHHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEEC---CTT-HHHHHHHTTC
T ss_pred             --------------C----hHHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEEC---Ccc-HHHHHHHcCC
Confidence                          1    1255556665 5 42 3689999999988999999999999832   255 5699999999


Q ss_pred             ceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHH
Q psy17691        616 PVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKA  667 (673)
Q Consensus       616 Pvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~  667 (673)
                      |||++...+-  |.-.   ...|-.-+|-.|.++.++...+|.+|++.++++
T Consensus       303 Pvv~~~~~te--r~e~---v~~G~~~lv~~d~~~i~~ai~~ll~d~~~~~~m  349 (385)
T 4hwg_A          303 PALNIREAHE--RPEG---MDAGTLIMSGFKAERVLQAVKTITEEHDNNKRT  349 (385)
T ss_dssp             CEEECSSSCS--CTHH---HHHTCCEECCSSHHHHHHHHHHHHTTCBTTBCC
T ss_pred             CEEEcCCCcc--chhh---hhcCceEEcCCCHHHHHHHHHHHHhChHHHHHh
Confidence            9999866431  2221   234654455568999999999999887765443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.96  E-value=0.00047  Score=75.95  Aligned_cols=113  Identities=10%  Similarity=-0.057  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG-KLTDALLHYKEAIRIQPSFADAYSNMGNTL  228 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  228 (673)
                      ..+|...+..+.+.++.+.|...|++| +..+.....|...|.+....+ +.+.|...|+++++..|+++..|..++...
T Consensus       286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            457788888888888899999999999 443345667777777766666 599999999999999999998888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK  267 (673)
Q Consensus       229 ~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~  267 (673)
                      ...|+.+.|...|+++    +.....|......-...|+
T Consensus       365 ~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~  399 (493)
T 2uy1_A          365 LRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS  399 (493)
T ss_dssp             HHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred             HHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence            9999999999999997    3456666666666555564

>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}

Probab=97.95  E-value=2.7e-05  Score=82.45  Aligned_cols=106  Identities=11%  Similarity=0.040  Sum_probs=76.5

Q ss_pred             hhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc---chhhhHHHHH
Q psy17691        558 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET---LASRVAASQL  634 (673)
Q Consensus       558 ~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~---~~~r~~~~~l  634 (673)
                      +.+.+.....++   ++.+.+..+  +.-.+|..+|+++.   -+|++|++|++++|+|+|..+-+.   -.....+..+
T Consensus       224 ~~~~~~~~~~~~---~~~v~~f~~--dm~~~l~~aDlvI~---raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l  295 (365)
T 3s2u_A          224 EITAERYRTVAV---EADVAPFIS--DMAAAYAWADLVIC---RAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFL  295 (365)
T ss_dssp             HHHHHHHHHTTC---CCEEESCCS--CHHHHHHHCSEEEE---CCCHHHHHHHHHHTCCEEECC-----CCHHHHHHHHH
T ss_pred             ccccceeccccc---ccccccchh--hhhhhhccceEEEe---cCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHH
Confidence            345566666665   355566654  34455668999984   368899999999999998775432   2344556778


Q ss_pred             HhcCCCccccC---CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        635 ATLGCPELIAR---THKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       635 ~~~gl~~~ia~---~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ...|..-+|..   |.++..+...+|.+|++.|++|+...
T Consensus       296 ~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a  335 (365)
T 3s2u_A          296 VRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQA  335 (365)
T ss_dssp             HTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred             HHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            88888766643   57899999999999999999998764

>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}

Probab=97.92  E-value=6.6e-05  Score=80.93  Aligned_cols=92  Identities=16%  Similarity=0.262  Sum_probs=70.2

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccC---CH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---TH  647 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~  647 (673)
                      +++|.+.++.++.+   .+..+|+++.   .+|.+|++||+++|||+|+++-.. -...-+..+...|..-.+..   |.
T Consensus       304 ~~~v~~~~~~~~~~---~l~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~~~~~~  376 (424)
T 2iya_A          304 PPNVEVHQWVPQLD---ILTKASAFIT---HAGMGSTMEALSNAVPMVAVPQIA-EQTMNAERIVELGLGRHIPRDQVTA  376 (424)
T ss_dssp             CTTEEEESSCCHHH---HHTTCSEEEE---CCCHHHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHTTSEEECCGGGCCH
T ss_pred             CCCeEEecCCCHHH---HHhhCCEEEE---CCchhHHHHHHHcCCCEEEecCcc-chHHHHHHHHHCCCEEEcCcCCCCH
Confidence            47899999998764   4567999885   577899999999999999997642 22344556667777554432   78


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHh
Q psy17691        648 KEYQDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       648 ~~yv~~a~~la~d~~~~~~~~~  669 (673)
                      ++..+...++.+|++.+++++.
T Consensus       377 ~~l~~~i~~ll~~~~~~~~~~~  398 (424)
T 2iya_A          377 EKLREAVLAVASDPGVAERLAA  398 (424)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCHHHHHHHHH
Confidence            9999988899999988877664

>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*

Probab=97.85  E-value=2e-05  Score=84.38  Aligned_cols=90  Identities=13%  Similarity=0.096  Sum_probs=63.0

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH--HHHHhcCCCccccC---
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA--SQLATLGCPELIAR---  645 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~ia~---  645 (673)
                      +++|.+.+..+..+.+.   .||+++.   .+|+.|++|||++|+|+|+++-.. -....+  ..+...|..-++..   
T Consensus       282 ~~~v~~~~~~~~~~ll~---~ad~~v~---~~G~~t~~Eal~~G~P~v~~p~~~-dq~~~a~~~~~~~~g~g~~~~~~~~  354 (398)
T 3oti_A          282 PRNVRAVGWTPLHTLLR---TCTAVVH---HGGGGTVMTAIDAGIPQLLAPDPR-DQFQHTAREAVSRRGIGLVSTSDKV  354 (398)
T ss_dssp             CTTEEEESSCCHHHHHT---TCSEEEE---CCCHHHHHHHHHHTCCEEECCCTT-CCSSCTTHHHHHHHTSEEECCGGGC
T ss_pred             CCcEEEEccCCHHHHHh---hCCEEEE---CCCHHHHHHHHHhCCCEEEcCCCc-hhHHHHHHHHHHHCCCEEeeCCCCC
Confidence            57899999998777665   5999983   477789999999999999975411 111223  45666676655532   


Q ss_pred             CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        646 THKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       646 ~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      +.+...    ++.+|++.++++++..
T Consensus       355 ~~~~l~----~ll~~~~~~~~~~~~~  376 (398)
T 3oti_A          355 DADLLR----RLIGDESLRTAAREVR  376 (398)
T ss_dssp             CHHHHH----HHHHCHHHHHHHHHHH
T ss_pred             CHHHHH----HHHcCHHHHHHHHHHH
Confidence            333333    8888999999887643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.83  E-value=0.00015  Score=63.48  Aligned_cols=92  Identities=13%  Similarity=0.009  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691        131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEE---ATRLYLKALEVF-P-EFAAAHSNLASVLQQQGKLTDALL  205 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~e---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~eA~~  205 (673)
                      ....+...|++.+..++...++.+++|+++....+...   ++..++..++.+ | ..-+.++.||..+++.|+|++|..
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            44455555555555555555555555555555554444   555555555544 2 234455555555555555555555


Q ss_pred             HHHHHHHhCCCCHHHHH
Q psy17691        206 HYKEAIRIQPSFADAYS  222 (673)
Q Consensus       206 ~~~~al~~~p~~~~~~~  222 (673)
                      +++..|+.+|++..+..
T Consensus        96 ~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           96 YVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHhCCCCHHHHH
Confidence            55555555555544443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.79  E-value=0.00021  Score=62.51  Aligned_cols=99  Identities=11%  Similarity=0.018  Sum_probs=85.6

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        164 GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTD---ALLHYKEAIRIQ-P-SFADAYSNMGNTLKEMQDIQGAL  238 (673)
Q Consensus       164 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~eA~  238 (673)
                      .....+.+.|.+.+..++....+.+++|+++....+...   ++..++..++.+ | ..-++++.||..++++|+|++|.
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            445677888888888888999999999999999887666   999999998887 5 46789999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        239 QCYSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       239 ~~~~~Al~l~p~~~~a~~~La~~~  262 (673)
                      .+++..|+.+|++.++..-...+.
T Consensus        95 ~~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           95 KYVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999998876554443

>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5

Probab=97.78  E-value=0.00012  Score=78.62  Aligned_cols=92  Identities=13%  Similarity=0.061  Sum_probs=69.9

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcccc---CCH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA---RTH  647 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~  647 (673)
                      +++|.+.++.|+.+.   +..||+++.   .+|.+|++||+++|||+|+++-.. -....+..+...|..-.+.   -|.
T Consensus       284 ~~~v~~~~~~~~~~~---l~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~~~~~~  356 (415)
T 1iir_A          284 GADCFAIGEVNHQVL---FGRVAAVIH---HGGAGTTHVAARAGAPQILLPQMA-DQPYYAGRVAELGVGVAHDGPIPTF  356 (415)
T ss_dssp             GGGEEECSSCCHHHH---GGGSSEEEE---CCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHHTSEEECSSSSCCH
T ss_pred             CCCEEEeCcCChHHH---HhhCCEEEe---CCChhHHHHHHHcCCCEEECCCCC-ccHHHHHHHHHCCCcccCCcCCCCH
Confidence            468999999997665   488999995   577789999999999999986521 1223445567777655443   278


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        648 KEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       648 ~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      ++..+...++ +|++.++++++.
T Consensus       357 ~~l~~~i~~l-~~~~~~~~~~~~  378 (415)
T 1iir_A          357 DSLSAALATA-LTPETHARATAV  378 (415)
T ss_dssp             HHHHHHHHHH-TSHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCHHHHHHHHHH
Confidence            8988888889 999988887654

>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}

Probab=97.71  E-value=9.5e-05  Score=80.23  Aligned_cols=93  Identities=14%  Similarity=0.094  Sum_probs=71.1

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccC---CH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---TH  647 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~  647 (673)
                      +++|.+.+..+..+.   +..||+++.   .+|+.|++||+++|||+|+++-.. -...-+..+...|..-.+-.   |.
T Consensus       318 ~~~v~~~~~~~~~~l---l~~ad~~V~---~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~~~~~~  390 (441)
T 2yjn_A          318 PDNVRTVGFVPMHAL---LPTCAATVH---HGGPGSWHTAAIHGVPQVILPDGW-DTGVRAQRTQEFGAGIALPVPELTP  390 (441)
T ss_dssp             CSSEEECCSCCHHHH---GGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHHTSEEECCTTTCCH
T ss_pred             CCCEEEecCCCHHHH---HhhCCEEEE---CCCHHHHHHHHHhCCCEEEeCCcc-cHHHHHHHHHHcCCEEEcccccCCH
Confidence            478999999987554   578999995   577889999999999999997631 12334455666776555542   78


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        648 KEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       648 ~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      ++..+...++.+|++.+++++..
T Consensus       391 ~~l~~~i~~ll~~~~~~~~~~~~  413 (441)
T 2yjn_A          391 DQLRESVKRVLDDPAHRAGAARM  413 (441)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHH
Confidence            89988888999999998887653

>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5

Probab=97.70  E-value=0.00024  Score=76.32  Aligned_cols=93  Identities=12%  Similarity=0.065  Sum_probs=70.5

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcccc---CCH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA---RTH  647 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~  647 (673)
                      ++++.+.++.++.+.   +..||+++.   .+|..|++||+++|||+|+++-.. -...-+..+...|..-.+.   .|.
T Consensus       285 ~~~v~~~~~~~~~~l---l~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~~~~~~  357 (416)
T 1rrv_A          285 RDDCFAIDEVNFQAL---FRRVAAVIH---HGSAGTEHVATRAGVPQLVIPRNT-DQPYFAGRVAALGIGVAHDGPTPTF  357 (416)
T ss_dssp             CTTEEEESSCCHHHH---GGGSSEEEE---CCCHHHHHHHHHHTCCEEECCCSB-THHHHHHHHHHHTSEEECSSSCCCH
T ss_pred             CCCEEEeccCChHHH---hccCCEEEe---cCChhHHHHHHHcCCCEEEccCCC-CcHHHHHHHHHCCCccCCCCCCCCH
Confidence            467899999987664   478999996   678889999999999999987522 1223444566667655443   378


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        648 KEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       648 ~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ++..+...++ .|++.++++++-.
T Consensus       358 ~~l~~~i~~l-~~~~~~~~~~~~~  380 (416)
T 1rrv_A          358 ESLSAALTTV-LAPETRARAEAVA  380 (416)
T ss_dssp             HHHHHHHHHH-TSHHHHHHHHHHT
T ss_pred             HHHHHHHHHh-hCHHHHHHHHHHH
Confidence            8988888899 9999998887643

>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*

Probab=97.64  E-value=0.00012  Score=76.64  Aligned_cols=91  Identities=13%  Similarity=-0.000  Sum_probs=68.3

Q ss_pred             eEEeccCcChHHHHHhcccccEEecCC--C------CCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcccc
Q psy17691        573 RILFSNVAAKEEHVRRGQLADVCLDTP--L------CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA  644 (673)
Q Consensus       573 rv~~~~~~~~~~~~~~~~~~Di~Ld~~--p------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia  644 (673)
                      +|.|+|+.|+++....+..+|+.|=..  .      ++-+..+.|+|++|+|||+........     ++..-|. .+++
T Consensus       215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~-----~v~~~~~-G~~~  288 (339)
T 3rhz_A          215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQE-----LIENNGL-GWIV  288 (339)
T ss_dssp             TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTH-----HHHHHTC-EEEE
T ss_pred             CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHH-----HHHhCCe-EEEe
Confidence            899999999999999997777776541  1      345788999999999999876544433     4444444 4667


Q ss_pred             CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        645 RTHKEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       645 ~~~~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ++.++.++....+  +++.+++|+...
T Consensus       289 ~~~~e~~~~i~~l--~~~~~~~m~~na  313 (339)
T 3rhz_A          289 KDVEEAIMKVKNV--NEDEYIELVKNV  313 (339)
T ss_dssp             SSHHHHHHHHHHC--CHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh--CHHHHHHHHHHH
Confidence            7889998888876  466788877654

>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*

Probab=97.57  E-value=0.00014  Score=77.34  Aligned_cols=91  Identities=18%  Similarity=0.124  Sum_probs=61.2

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEY  650 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y  650 (673)
                      ++++.+.++.|+.+.+.   .+|+|+   ..+|.+|++||+++|||+|+++-.. -...-+..+...|..-.+ .+.+.-
T Consensus       287 ~~~v~~~~~~p~~~lL~---~~~~~v---~h~G~~s~~Eal~~GvP~v~~P~~~-dQ~~na~~v~~~G~g~~l-~~~~~~  358 (400)
T 4amg_A          287 PANVRVVEWIPLGALLE---TCDAII---HHGGSGTLLTALAAGVPQCVIPHGS-YQDTNRDVLTGLGIGFDA-EAGSLG  358 (400)
T ss_dssp             CTTEEEECCCCHHHHHT---TCSEEE---ECCCHHHHHHHHHHTCCEEECCC----CHHHHHHHHHHTSEEEC-CTTTCS
T ss_pred             CCCEEEEeecCHHHHhh---hhhhee---ccCCccHHHHHHHhCCCEEEecCcc-cHHHHHHHHHHCCCEEEc-CCCCch
Confidence            57899999999877664   589987   3788899999999999999986432 122334456666764333 222222


Q ss_pred             HHHHHHhcCCHHHHHHHHh
Q psy17691        651 QDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       651 v~~a~~la~d~~~~~~~~~  669 (673)
                      .+...++.+|++.|++.+.
T Consensus       359 ~~al~~lL~d~~~r~~a~~  377 (400)
T 4amg_A          359 AEQCRRLLDDAGLREAALR  377 (400)
T ss_dssp             HHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHcCHHHHHHHHH
Confidence            3455567789888776654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.57  E-value=0.0008  Score=60.24  Aligned_cols=123  Identities=13%  Similarity=0.072  Sum_probs=93.2

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        145 LCPTHADSLNNLANIKREQGYI------EEATRLYLKALEVFPEF--------AAAHSNLASVLQQQGKLTDALLHYKEA  210 (673)
Q Consensus       145 ~~p~~~~a~~~Lg~~~~~~g~~------~eA~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~eA~~~~~~a  210 (673)
                      ..|++++.|........+.|+.      ++-++.|++|+..-|-.        ...|...|.. ...++.++|.+.|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            4677788888777777777777      77778888887765542        4566677755 5568999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        211 IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       211 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      ++++...+.+|...|..-.++|+..+|.+.+.+|+.+.|...+.. ..+..-.+.|+..
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l-e~a~~nl~~~~~~  144 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML-EIALRNLNLQKKQ  144 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH-HHHHHHHHTTCSC
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH-HHHHHhhhcCCCe
Confidence            888888888999999999999999999999999999988765543 3344445566654

>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*

Probab=97.49  E-value=0.0011  Score=70.88  Aligned_cols=93  Identities=16%  Similarity=0.099  Sum_probs=69.2

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccC---CH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---TH  647 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~  647 (673)
                      +++|.+.+..|+.+.+   ..+|+++   ..+|..|+.||+++|||+|.++-. .-....+..+...|..-.+..   |.
T Consensus       267 ~~~v~~~~~~~~~~ll---~~~d~~v---~~gG~~t~~Eal~~GvP~v~~p~~-~dQ~~na~~~~~~G~g~~l~~~~~~~  339 (404)
T 3h4t_A          267 GDDCLVVGEVNHQVLF---GRVAAVV---HHGGAGTTTAVTRAGAPQVVVPQK-ADQPYYAGRVADLGVGVAHDGPTPTV  339 (404)
T ss_dssp             CTTEEEESSCCHHHHG---GGSSEEE---ECCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHHTSEEECSSSSCCH
T ss_pred             CCCEEEecCCCHHHHH---hhCcEEE---ECCcHHHHHHHHHcCCCEEEcCCc-ccHHHHHHHHHHCCCEeccCcCCCCH
Confidence            4789999999876655   4699998   356778999999999999998642 122334455677777655432   78


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691        648 KEYQDIAIRLGTDRDYCEKALLYH  671 (673)
Q Consensus       648 ~~yv~~a~~la~d~~~~~~~~~~~  671 (673)
                      ++..+...++.+ ++.+++++.-.
T Consensus       340 ~~l~~ai~~ll~-~~~~~~~~~~~  362 (404)
T 3h4t_A          340 ESLSAALATALT-PGIRARAAAVA  362 (404)
T ss_dssp             HHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-HHHHHHHHHHH
Confidence            899888888888 88888877644

>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*

Probab=97.46  E-value=0.0005  Score=74.94  Aligned_cols=141  Identities=13%  Similarity=0.154  Sum_probs=90.9

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      ...++|.||+.......+.+....+-++..+.-.+|..+....                        ..+          
T Consensus       270 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~------------------------~~l----------  315 (456)
T 2c1x_A          270 PTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKAR------------------------VHL----------  315 (456)
T ss_dssp             TTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGG------------------------GGS----------
T ss_pred             CcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcch------------------------hhC----------
Confidence            4568888888777666666666666666555445565541000                        000          


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAAS  632 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~  632 (673)
                      +    +.+.++     + .+++.+.++.|+.+.|. +..+|+|+.   .+|.+|++||+++|||+|+++-. .-...-+.
T Consensus       316 ~----~~~~~~-----~-~~~~~v~~w~pq~~vL~-h~~~~~fvt---h~G~~S~~Eal~~GvP~i~~P~~-~dQ~~Na~  380 (456)
T 2c1x_A          316 P----EGFLEK-----T-RGYGMVVPWAPQAEVLA-HEAVGAFVT---HCGWNSLWESVAGGVPLICRPFF-GDQRLNGR  380 (456)
T ss_dssp             C----TTHHHH-----H-TTTEEEESCCCHHHHHT-STTEEEEEE---CCCHHHHHHHHHHTCCEEECCCS-TTHHHHHH
T ss_pred             C----HHHHhh-----c-CCceEEecCCCHHHHhc-CCcCCEEEe---cCCcchHHHHHHhCceEEecCCh-hhHHHHHH
Confidence            0    111111     1 36788889998765443 336888886   89999999999999999999753 22334556


Q ss_pred             HHHhc-CCCcccc---CCHHHHHHHHHHhcCCHH
Q psy17691        633 QLATL-GCPELIA---RTHKEYQDIAIRLGTDRD  662 (673)
Q Consensus       633 ~l~~~-gl~~~ia---~~~~~yv~~a~~la~d~~  662 (673)
                      .+... |..-.+.   -+.++..+...++..|++
T Consensus       381 ~l~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~~  414 (456)
T 2c1x_A          381 MVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEK  414 (456)
T ss_dssp             HHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHH
T ss_pred             HHHHHhCeEEEecCCCcCHHHHHHHHHHHHCCCc
Confidence            66666 7765443   267888887778888874

>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*

Probab=97.43  E-value=0.00086  Score=72.81  Aligned_cols=141  Identities=12%  Similarity=0.155  Sum_probs=92.1

Q ss_pred             CCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       472 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      +...++|.||+.....+++.+...+.-|+..+.-.+|..+..                                      
T Consensus       271 ~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~--------------------------------------  312 (454)
T 3hbf_A          271 ENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD--------------------------------------  312 (454)
T ss_dssp             CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSC--------------------------------------
T ss_pred             CCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc--------------------------------------
Confidence            345788899988888888888888888877766666765510                                      


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA  631 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~  631 (673)
                        .  .+.+-+.|.+. + ++|+.+.++.|+.+.|. +..+++|+.   ++|.+|++||++.|||+|+++--. -...-+
T Consensus       313 --~--~~~lp~~~~~~-~-~~~~~vv~w~Pq~~vL~-h~~v~~fvt---H~G~~S~~Eal~~GvP~i~~P~~~-DQ~~Na  381 (454)
T 3hbf_A          313 --P--KEKLPKGFLER-T-KTKGKIVAWAPQVEILK-HSSVGVFLT---HSGWNSVLECIVGGVPMISRPFFG-DQGLNT  381 (454)
T ss_dssp             --H--HHHSCTTHHHH-T-TTTEEEESSCCHHHHHH-STTEEEEEE---CCCHHHHHHHHHHTCCEEECCCST-THHHHH
T ss_pred             --c--hhcCCHhHHhh-c-CCceEEEeeCCHHHHHh-hcCcCeEEe---cCCcchHHHHHHcCCCEecCcccc-cHHHHH
Confidence              0  00010111111 2 46888889999876665 222336664   789999999999999999997521 133344


Q ss_pred             HHHHh-cCCCcccc---CCHHHHHHHHHHhcCCH
Q psy17691        632 SQLAT-LGCPELIA---RTHKEYQDIAIRLGTDR  661 (673)
Q Consensus       632 ~~l~~-~gl~~~ia---~~~~~yv~~a~~la~d~  661 (673)
                      ..+.. +|..-.+.   -+.++..+...++..|+
T Consensus       382 ~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~~  415 (454)
T 3hbf_A          382 ILTESVLEIGVGVDNGVLTKESIKKALELTMSSE  415 (454)
T ss_dssp             HHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSSH
T ss_pred             HHHHHhhCeeEEecCCCCCHHHHHHHHHHHHCCC
Confidence            55665 47654442   26788887777888875

>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10

Probab=97.42  E-value=0.0016  Score=71.41  Aligned_cols=144  Identities=15%  Similarity=0.223  Sum_probs=91.4

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCc-CCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAV-GEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      ...++|.||+.....+...+...++-|...+.-.+|..+.... ++                                  
T Consensus       294 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~----------------------------------  339 (482)
T 2pq6_A          294 PGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGG----------------------------------  339 (482)
T ss_dssp             TTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTT----------------------------------
T ss_pred             CCceEEEecCCcccCCHHHHHHHHHHHHhcCCcEEEEEcCCccccc----------------------------------
Confidence            4467888888776666666666677777766556665541100 00                                  


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA  631 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~  631 (673)
                       ...-.+.+.+.     + ++++.+.++.|+.+.|+ +..+|+|+.   ++|.+|++||+++|||+|+++-. .-...-+
T Consensus       340 -~~~l~~~~~~~-----~-~~~~~v~~~~pq~~~L~-h~~~~~~vt---h~G~~s~~Eal~~GvP~i~~P~~-~dQ~~na  407 (482)
T 2pq6_A          340 -SVIFSSEFTNE-----I-ADRGLIASWCPQDKVLN-HPSIGGFLT---HCGWNSTTESICAGVPMLCWPFF-ADQPTDC  407 (482)
T ss_dssp             -GGGSCHHHHHH-----H-TTTEEEESCCCHHHHHT-STTEEEEEE---CCCHHHHHHHHHHTCCEEECCCS-TTHHHHH
T ss_pred             -cccCcHhHHHh-----c-CCCEEEEeecCHHHHhc-CCCCCEEEe---cCCcchHHHHHHcCCCEEecCcc-cchHHHH
Confidence             00000112121     2 46888889999776443 344666775   89999999999999999999764 2233445


Q ss_pred             HHHH-hcCCCcccc--CCHHHHHHHHHHhcCCHH
Q psy17691        632 SQLA-TLGCPELIA--RTHKEYQDIAIRLGTDRD  662 (673)
Q Consensus       632 ~~l~-~~gl~~~ia--~~~~~yv~~a~~la~d~~  662 (673)
                      ..+. ..|..-.+.  -+.++..+...++..|++
T Consensus       408 ~~~~~~~G~g~~l~~~~~~~~l~~~i~~ll~~~~  441 (482)
T 2pq6_A          408 RFICNEWEIGMEIDTNVKREELAKLINEVIAGDK  441 (482)
T ss_dssp             HHHHHTSCCEEECCSSCCHHHHHHHHHHHHTSHH
T ss_pred             HHHHHHhCEEEEECCCCCHHHHHHHHHHHHcCCc
Confidence            5554 677765443  378888888888888885

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.33  E-value=0.01  Score=65.30  Aligned_cols=149  Identities=12%  Similarity=-0.019  Sum_probs=118.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhhC-CCCHHHHHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLC-PTHADSLNNLANIKREQG---------YIEEATRLYLKALEVF-PEFAAAHSN  189 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~Lg~~~~~~g---------~~~eA~~~~~~al~~~-p~~~~~~~~  189 (673)
                      ..+..+.+.|+.++|++.|++..+.. .-+...|..+-.++...+         +.++|.+.|++..+.. .-+..+|..
T Consensus        31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~  110 (501)
T 4g26_A           31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN  110 (501)
T ss_dssp             HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            34556667899999999999998863 235667777766666544         3788999999887653 236778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Q psy17691        190 LASVLQQQGKLTDALLHYKEAIRIQ-PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN-PGFADAHSNLASIHKDSGK  267 (673)
Q Consensus       190 la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~-p~~~~a~~~La~~~~~~g~  267 (673)
                      +-..|.+.|++++|.+.|++..+.. ..+...|+.+-..|.+.|+.++|.+.|++..+.. .-+...|..|..++.+.|+
T Consensus       111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~  190 (501)
T 4g26_A          111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN  190 (501)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence            9999999999999999999987763 2357889999999999999999999999988753 2246788889999999999


Q ss_pred             Cc
Q psy17691        268 RG  269 (673)
Q Consensus       268 ~~  269 (673)
                      .+
T Consensus       191 ~d  192 (501)
T 4g26_A          191 AD  192 (501)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*

Probab=97.31  E-value=0.0022  Score=70.05  Aligned_cols=149  Identities=16%  Similarity=0.203  Sum_probs=93.7

Q ss_pred             CCcEEEecCCccc-ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691        473 EDAIVYCNFNQLY-KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK  551 (673)
Q Consensus       473 ~~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (673)
                      ...++|.||+... .++.+.+...++-|+..+.-.+|..+..   +..                                
T Consensus       275 ~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~---~~~--------------------------------  319 (463)
T 2acv_A          275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE---KKV--------------------------------  319 (463)
T ss_dssp             TTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC---GGG--------------------------------
T ss_pred             CCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC---ccc--------------------------------
Confidence            4568888888777 7777777777777776655555655410   000                                


Q ss_pred             CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691        552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA  631 (673)
Q Consensus       552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~  631 (673)
                      .+    +.+.+....    .+|+.+.++.|+.+.|. +..+|+|+.   ++|.+|++||+++|||+|+++-..- ...-+
T Consensus       320 l~----~~~~~~~~~----~~~~~v~~w~pq~~vL~-h~~~~~fvt---h~G~~s~~Eal~~GvP~i~~P~~~d-Q~~Na  386 (463)
T 2acv_A          320 FP----EGFLEWMEL----EGKGMICGWAPQVEVLA-HKAIGGFVS---HCGWNSILESMWFGVPILTWPIYAE-QQLNA  386 (463)
T ss_dssp             SC----TTHHHHHHH----HCSEEEESSCCHHHHHH-STTEEEEEE---CCCHHHHHHHHHTTCCEEECCCSTT-HHHHH
T ss_pred             CC----hhHHHhhcc----CCCEEEEccCCHHHHhC-CCccCeEEe---cCCchhHHHHHHcCCCeeeccchhh-hHHHH
Confidence            01    112222110    25777888998766542 346888875   8999999999999999999976322 23344


Q ss_pred             HH-HHhcCCCccc---------cCCHHHHHHHHHHhcC-CHHHHHHHHh
Q psy17691        632 SQ-LATLGCPELI---------ARTHKEYQDIAIRLGT-DRDYCEKALL  669 (673)
Q Consensus       632 ~~-l~~~gl~~~i---------a~~~~~yv~~a~~la~-d~~~~~~~~~  669 (673)
                      .. +...|..-.+         .-+.++..+...++.+ +++.+++.++
T Consensus       387 ~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~r~~a~~  435 (463)
T 2acv_A          387 FRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQE  435 (463)
T ss_dssp             HHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTCTTCTHHHHHHH
T ss_pred             HHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence            44 4677776555         1267777777667776 4566665543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.30  E-value=0.0012  Score=60.47  Aligned_cols=131  Identities=11%  Similarity=0.010  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHH
Q psy17691        119 TFSYIISVLLLIQVSEAEECYNTALRLCPTH---------ADSLNNLANIKREQGYIEEATRLYLKALEVFP---EFAAA  186 (673)
Q Consensus       119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p---~~~~~  186 (673)
                      .+..+..++..+.|+.|+-....++....++         ..++..+|.+++.+++|..|...|+++|+...   .....
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3455677788999999999998877764332         34788899999999999999999999987632   22221


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        187 HSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       187 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~  262 (673)
                      ...++.    ...+..       ... .+.+.++.+.++.||.++|++++|+..++.. -..-..+.....||.+|
T Consensus       103 ~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          103 RPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             cccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            111110    000000       111 1345678889999999999999999887652 12224566666677665

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.24  E-value=0.0045  Score=55.40  Aligned_cols=110  Identities=14%  Similarity=0.147  Sum_probs=90.1

Q ss_pred             hcCCCChhHH-HHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691        111 ALSPDDGTTF-SYIISVLLLIQV------SEAEECYNTALRLCPTH--------ADSLNNLANIKREQGYIEEATRLYLK  175 (673)
Q Consensus       111 ~l~p~~~~~~-~~~~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~a~~~Lg~~~~~~g~~~eA~~~~~~  175 (673)
                      ...|++.+.| .++..+-..|+.      ++-++.|++|+..-|..        ...|...|.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            4578888887 445555557888      88899999999987653        4466667755 567999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691        176 ALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY  221 (673)
Q Consensus       176 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  221 (673)
                      ++.++...+.+|...|..-.++|+...|.+.+.+++...|...+.+
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            9999999999999999999999999999999999999999866543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.22  E-value=0.0017  Score=59.36  Aligned_cols=96  Identities=13%  Similarity=-0.006  Sum_probs=56.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCP---THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ  196 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  196 (673)
                      ...+..++..++|.+|...|+++++...   ........++.    ...       +..... .+.+.++.+.++.||.+
T Consensus        67 ~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~----~ss-------~p~s~~-~~~e~Elkykia~C~~~  134 (167)
T 3ffl_A           67 VYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN----SAS-------TPQSQC-LPSEIEVKYKLAECYTV  134 (167)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------------------------C-CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc----cCC-------Cccccc-ccchHHHHHHHHHHHHH
Confidence            3566778889999999999999988632   22211111110    000       000111 13456788889999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        197 QGKLTDALLHYKEAIRIQPSFADAYSNMGNTL  228 (673)
Q Consensus       197 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  228 (673)
                      ++++++|+..++..- ..-..+.....||.+|
T Consensus       135 l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          135 LKQDKDAIAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             TTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             HCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence            999999988876532 1223466777777665

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.99  E-value=0.041  Score=60.48  Aligned_cols=131  Identities=6%  Similarity=-0.026  Sum_probs=106.6

Q ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691        131 QVSEAEECYNTALRLC-PTHADSLNNLANIKREQGYIEEATRLYLKALEVF-PEFAAAHSNLASVLQQQGKLTDALLHYK  208 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~-p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~  208 (673)
                      ..++|.+.|++..+.. .-+..+|..+-..|.+.|++++|.+.|++..+.. .-+...|+.+-..|.+.|+.++|.+.|+
T Consensus        85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence            4789999999988763 2367889999999999999999999999988763 3367889999999999999999999999


Q ss_pred             HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q psy17691        209 EAIRIQ-PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI--NPGFADAHSNLASIH  262 (673)
Q Consensus       209 ~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l--~p~~~~a~~~La~~~  262 (673)
                      +..+.. ..+...|..+-.+|.+.|+.++|.+.+++.-+.  .|+ ...+..+-..+
T Consensus       165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F  220 (501)
T 4g26_A          165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF  220 (501)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence            988763 225788999999999999999999999998764  444 34444443333

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.96  E-value=0.021  Score=50.67  Aligned_cols=75  Identities=7%  Similarity=-0.071  Sum_probs=43.1

Q ss_pred             CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        183 FAAAHSNLASVLQQQGKL---TDALLHYKEAIRIQPS-FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       183 ~~~~~~~la~~~~~~g~~---~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      ...+.+++|+++....+.   .+++..++..++.+|. ..++++.||..+.++|+|++|..+.+..|+.+|++.++..-
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            455555555555554432   3455566666655553 34566666666666666666666666666666666555443

>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*

Probab=96.93  E-value=0.0063  Score=66.65  Aligned_cols=164  Identities=15%  Similarity=0.189  Sum_probs=92.3

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      ...++|.||+.....+.+.+...++-|+..+.-.+|.++.+...+.  . ..+    ... ....+-..+|         
T Consensus       267 ~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~--~-~~~----~~~-~~~~~~~~lp---------  329 (480)
T 2vch_A          267 LGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIAN--S-SYF----DSH-SQTDPLTFLP---------  329 (480)
T ss_dssp             TTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTT--T-TTT----CC---CSCGGGGSC---------
T ss_pred             CCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCcccccc--c-ccc----ccc-cccchhhhcC---------
Confidence            4578888888887778888887777787777666676552110000  0 000    000 0000000011         


Q ss_pred             ChhhhhhHHHHHHHcCCCCCe-EEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691        553 PAVGEANIQATAQALGLDQHR-ILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA  631 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~r-v~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~  631 (673)
                           +++.++     + .+| +++.++.|+.+.|+. ..+..|+.   ++|.+|++||+++|||+|+++-- .-...-+
T Consensus       330 -----~~~~~~-----~-~~~g~~v~~w~Pq~~vL~h-~~v~~fvt---HgG~~S~~Eal~~GvP~i~~P~~-~DQ~~na  393 (480)
T 2vch_A          330 -----PGFLER-----T-KKRGFVIPFWAPQAQVLAH-PSTGGFLT---HCGWNSTLESVVSGIPLIAWPLY-AEQKMNA  393 (480)
T ss_dssp             -----TTHHHH-----T-TTTEEEEESCCCHHHHHHS-TTEEEEEE---CCCHHHHHHHHHHTCCEEECCCS-TTHHHHH
T ss_pred             -----HHHHHH-----h-CCCeEEEeCccCHHHHhCC-CCcCeEEe---cccchhHHHHHHcCCCEEecccc-ccchHHH
Confidence                 122222     1 233 455568887766642 22335654   89999999999999999999863 2233334


Q ss_pred             HHH-HhcCCCcccc------CCHHHHHHHHHHhcC---CHHHHHHHHh
Q psy17691        632 SQL-ATLGCPELIA------RTHKEYQDIAIRLGT---DRDYCEKALL  669 (673)
Q Consensus       632 ~~l-~~~gl~~~ia------~~~~~yv~~a~~la~---d~~~~~~~~~  669 (673)
                      ..+ ...|..-.+.      -|.++..+...++..   |++.|++.++
T Consensus       394 ~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~r~~a~~  441 (480)
T 2vch_A          394 VLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKE  441 (480)
T ss_dssp             HHHHHTTCCEECCCCCTTSCCCHHHHHHHHHHHHTSTHHHHHHHHHHH
T ss_pred             HHHHHHhCeEEEeecccCCccCHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence            444 5667654332      267777777777777   5566665543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.85  E-value=0.028  Score=49.96  Aligned_cols=81  Identities=7%  Similarity=-0.130  Sum_probs=66.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        147 PTHADSLNNLANIKREQGYI---EEATRLYLKALEVFPE-FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS  222 (673)
Q Consensus       147 p~~~~a~~~Lg~~~~~~g~~---~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  222 (673)
                      .-..++.+++|+++....+.   .+++..++..++..|. .-+.++.||..+++.|+|++|.++.+..|+..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45688889999998887654   4688889998888884 5788899999999999999999999999999999887765


Q ss_pred             HHHHH
Q psy17691        223 NMGNT  227 (673)
Q Consensus       223 ~lg~~  227 (673)
                      ....+
T Consensus       116 Lk~~I  120 (144)
T 1y8m_A          116 LKSMV  120 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.82  E-value=0.012  Score=51.56  Aligned_cols=77  Identities=8%  Similarity=-0.131  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691        149 HADSLNNLANIKREQGYI---EEATRLYLKALEVFPE-FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM  224 (673)
Q Consensus       149 ~~~a~~~Lg~~~~~~g~~---~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  224 (673)
                      .+.+.+++|+++....+.   .+++..++..++.+|. ..+.++.||..+++.|+|++|.++.+..++..|++..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            355666666666655433   3456666666655553 355566666666666666666666666666666665554443


Q ss_pred             H
Q psy17691        225 G  225 (673)
Q Consensus       225 g  225 (673)
                      .
T Consensus       119 ~  119 (134)
T 3o48_A          119 S  119 (134)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.52  E-value=0.023  Score=49.83  Aligned_cols=74  Identities=7%  Similarity=-0.063  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        184 AAAHSNLASVLQQQGKL---TDALLHYKEAIRIQPS-FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~---~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      ..+.+++|+++.+..+.   .+++..++..++.+|. ..+.++.+|..+.++|+|++|..+.+..|+..|++..+..-
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            45555555555555432   3455555555555552 34555666666666666666666666666666666555433

>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*

Probab=96.43  E-value=0.0047  Score=69.16  Aligned_cols=70  Identities=11%  Similarity=0.023  Sum_probs=53.1

Q ss_pred             hhhhHHHHHHHcCCCC---Ce--EEecc-CcChH------HHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeecCC
Q psy17691        556 GEANIQATAQALGLDQ---HR--ILFSN-VAAKE------EHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTLPG  622 (673)
Q Consensus       556 ~~~~~~~~~~~~g~~~---~r--v~~~~-~~~~~------~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~~g  622 (673)
                      ..+.+...+++.|+.-   +|  |+|.| .++..      ++...|+.||+|+-| +-++-|.|.+|||++|+||||-.-
T Consensus       471 ~~D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~  550 (725)
T 3nb0_A          471 ANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNV  550 (725)
T ss_dssp             GGCHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETT
T ss_pred             CccHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCC
Confidence            3466777888888752   34  67776 55544      578888999999765 567889999999999999999665


Q ss_pred             Ccc
Q psy17691        623 ETL  625 (673)
Q Consensus       623 ~~~  625 (673)
                      ..+
T Consensus       551 gG~  553 (725)
T 3nb0_A          551 SGF  553 (725)
T ss_dssp             BHH
T ss_pred             CCh
Confidence            443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.076  Score=60.71  Aligned_cols=115  Identities=12%  Similarity=0.040  Sum_probs=84.8

Q ss_pred             cCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhh--------CCCC----------HHH
Q psy17691        129 LIQ-VSEAEECYNTALRLCPTHADSLNNLANIKR---EQGYIEEATRLYLKALEV--------FPEF----------AAA  186 (673)
Q Consensus       129 ~g~-~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~---~~g~~~eA~~~~~~al~~--------~p~~----------~~~  186 (673)
                      .++ ++.|+..+++..+.+|.... ++..+.+..   ...+--+|+..+.++++.        .+.+          ...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            455 68899999999999987643 222232222   123455677777777642        2333          223


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        187 HSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA  244 (673)
Q Consensus       187 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~A  244 (673)
                      +..-+..+..+|+++-|+++.++|+...|.+...|..|+.+|..+|+++.|+-.+..+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4444677788999999999999999999999999999999999999999999776553

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.75  E-value=1.1  Score=40.87  Aligned_cols=29  Identities=14%  Similarity=0.187  Sum_probs=20.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        222 SNMGNTLKEMQDIQGALQCYSRAIQINPG  250 (673)
Q Consensus       222 ~~lg~~~~~~g~~~eA~~~~~~Al~l~p~  250 (673)
                      .+.+.-|..+|-.++...+|...-+.+|.
T Consensus       212 a~aa~~yf~lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          212 SNAARRYFNLGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence            34556667777777777777777777764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.28  E-value=0.36  Score=44.63  Aligned_cols=103  Identities=11%  Similarity=0.009  Sum_probs=71.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17691        123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTD  202 (673)
Q Consensus       123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  202 (673)
                      ....+..|+++.|.+..++.     ++...|..||.....+|+++-|+.+|+++-.        +..+..+|...|+.+.
T Consensus        12 F~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHH
Confidence            34556788999998887665     6788899999999999999999999988632        2345555666777665


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691        203 ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR  243 (673)
Q Consensus       203 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~  243 (673)
                      -.+..+.+.....     ++....++..+|+++++++.|.+
T Consensus        79 L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           79 LSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence            5555444443322     12333456677888888877755

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.17  E-value=0.083  Score=57.64  Aligned_cols=81  Identities=19%  Similarity=0.277  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      ..+..||.+......++.|..+|.+|+.+.|++...++.||.+....|+.-+|+-+|.+++.....++.+..||..++.+
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            36678899999999999999999999999999999999999999999999999999999999888899999999998876


Q ss_pred             c
Q psy17691        265 S  265 (673)
Q Consensus       265 ~  265 (673)
                      .
T Consensus       233 ~  233 (497)
T 1ya0_A          233 A  233 (497)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.90  E-value=0.41  Score=47.27  Aligned_cols=122  Identities=16%  Similarity=0.116  Sum_probs=85.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA  203 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  203 (673)
                      ..+++.|+.++|++..+..++.+|.+......|..++.-.|+++.|.+-++.+.+++|+....-..+-.+.       .|
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~a   77 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KA   77 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HH
Confidence            34566789999999999999999999999999999999999999999999999999998754322221111       11


Q ss_pred             HHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        204 LLHYKEAIRI--------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       204 ~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~  252 (673)
                      ...=++.+.-        .|........-+......|+.++|.+.-.+|++..|...
T Consensus        78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~  134 (273)
T 1zbp_A           78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  134 (273)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence            1111112211        111122333445566677999999999999999887644

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.77  E-value=0.4  Score=50.62  Aligned_cols=106  Identities=14%  Similarity=0.084  Sum_probs=73.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691        128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA-TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH  206 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~  206 (673)
                      ..|+.++|...+++|+.+.....-.  ...     ...+-.+ ...+++..      ..+...++..+...|++++|+..
T Consensus       127 ~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          127 AAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHHHHHHH
Confidence            3578888888888888875332100  000     0111111 11111111      12455678888899999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       207 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  246 (673)
                      +++++..+|-+-.+|..+-.+|...|+..+|++.|+++-+
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.64  E-value=0.13  Score=56.00  Aligned_cols=79  Identities=22%  Similarity=0.344  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        152 SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE  230 (673)
Q Consensus       152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  230 (673)
                      .+..||.+......++.|..+|.+|..+.|++...++.||.+....|+.-+|+-+|.+++......+.+..|+...+.+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            5667888888888899999999999999999999999999999999999999999999988877788888888887765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.28  E-value=0.33  Score=55.96  Aligned_cols=44  Identities=11%  Similarity=0.033  Sum_probs=24.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA  176 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~a  176 (673)
                      ..|++++|.+..+     ..++...|..+|..+.+.++++.|+++|.++
T Consensus       664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3445555544432     2244556666666666666666666666654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.09  E-value=0.6  Score=49.26  Aligned_cols=63  Identities=13%  Similarity=0.014  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR  212 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  212 (673)
                      ..+...++..+...|++++|+..+++++..+|-+..+|..+-.++...|+..+|++.|+++-+
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            346677888999999999999999999999999999999999999999999999999988754

>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7

Probab=93.97  E-value=0.08  Score=54.78  Aligned_cols=52  Identities=12%  Similarity=0.053  Sum_probs=41.1

Q ss_pred             EEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhh
Q psy17691        574 ILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRV  629 (673)
Q Consensus       574 v~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~  629 (673)
                      +.+.|..+..+..+.+..+|+++-.=  +|+++.  |.++|+|+|++-|.+...|.
T Consensus       244 ~~l~g~~sl~e~~ali~~a~l~I~~D--sg~~Hl--Aaa~g~P~v~lfg~t~~~~~  295 (348)
T 1psw_A          244 RNLAGETQLDQAVILIAACKAIVTND--SGLMHV--AAALNRPLVALYGPSSPDFT  295 (348)
T ss_dssp             EECTTTSCHHHHHHHHHTSSEEEEES--SHHHHH--HHHTTCCEEEEESSSCTTSS
T ss_pred             EeccCcCCHHHHHHHHHhCCEEEecC--CHHHHH--HHHcCCCEEEEECCCCcccc
Confidence            56788999999999999999997532  444444  88899999999988765544

>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*

Probab=93.87  E-value=0.21  Score=50.23  Aligned_cols=76  Identities=11%  Similarity=-0.049  Sum_probs=51.9

Q ss_pred             hhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHh
Q psy17691        557 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLAT  636 (673)
Q Consensus       557 ~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~  636 (673)
                      .+.+++.....    .++.+.+..+  +...+|..+|+++.+    ||+|+.|++++|+|.|..+-... .+.-+..|..
T Consensus       197 ~~~l~~~~~~~----~~v~v~~~~~--~m~~~m~~aDlvI~~----gG~T~~E~~~~g~P~i~ip~~~~-Q~~nA~~l~~  265 (282)
T 3hbm_A          197 LKKLQKFAKLH----NNIRLFIDHE--NIAKLMNESNKLIIS----ASSLVNEALLLKANFKAICYVKN-QESTATWLAK  265 (282)
T ss_dssp             HHHHHHHHHTC----SSEEEEESCS--CHHHHHHTEEEEEEE----SSHHHHHHHHTTCCEEEECCSGG-GHHHHHHHHH
T ss_pred             HHHHHHHHhhC----CCEEEEeCHH--HHHHHHHHCCEEEEC----CcHHHHHHHHcCCCEEEEeCCCC-HHHHHHHHHH
Confidence            35565554432    3677777653  455566689999982    56899999999999988764432 3456677777


Q ss_pred             cCCCccc
Q psy17691        637 LGCPELI  643 (673)
Q Consensus       637 ~gl~~~i  643 (673)
                      .|...++
T Consensus       266 ~G~~~~~  272 (282)
T 3hbm_A          266 KGYEVEY  272 (282)
T ss_dssp             TTCEEEC
T ss_pred             CCCEEEc
Confidence            7775543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.84  E-value=0.85  Score=41.46  Aligned_cols=103  Identities=11%  Similarity=0.040  Sum_probs=69.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Q psy17691        147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI-------------  213 (673)
Q Consensus       147 p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------------  213 (673)
                      |..++....++.+++-.|++..++-.+.+     -+...+.+.-+.+|...++|..|+.+++..++-             
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            44445556667777777777666554432     233555566667777777777777777777632             


Q ss_pred             ----CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691        214 ----QPSFAD-AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA  254 (673)
Q Consensus       214 ----~p~~~~-~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a  254 (673)
                          +|.+.+ .+..+|.++.+.|+.+||+.+|.......|-...+
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence                344444 56678999999999999999999999998875544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.07  E-value=0.32  Score=55.55  Aligned_cols=106  Identities=15%  Similarity=0.054  Sum_probs=79.4

Q ss_pred             cCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH--H-cCCHHHHHHHHHHHHHh--------CCCC----------HHH
Q psy17691        163 QGY-IEEATRLYLKALEVFPEFAAAHSNLASVLQ--Q-QGKLTDALLHYKEAIRI--------QPSF----------ADA  220 (673)
Q Consensus       163 ~g~-~~eA~~~~~~al~~~p~~~~~~~~la~~~~--~-~g~~~eA~~~~~~al~~--------~p~~----------~~~  220 (673)
                      .++ ++.|+..+++..+.+|.....+ ..+.+..  . ..+--+|+....++++.        .+.+          ...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            445 6889999999999999765433 2222221  1 22345677777777642        2222          235


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        221 YSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       221 ~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +..-+..+...|+++-|+++.++|+...|.....|+.|+.+|..+|+++
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e  388 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYE  388 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHH
Confidence            5556778889999999999999999999999999999999999999998

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.47  E-value=1.5  Score=50.23  Aligned_cols=79  Identities=11%  Similarity=0.055  Sum_probs=50.1

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHc
Q psy17691        160 KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEA--------IRIQPSFADAYSNMGNTLKEM  231 (673)
Q Consensus       160 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a--------l~~~p~~~~~~~~lg~~~~~~  231 (673)
                      ..+.|++++|.+..+     .-++...|..+|..+.+.++++.|+++|.++        +.....+.+.+..++......
T Consensus       662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~  736 (814)
T 3mkq_A          662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT  736 (814)
T ss_dssp             HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence            355677777666543     2356778888888888888888888888775        122244455555666666666


Q ss_pred             CCHHHHHHHHHH
Q psy17691        232 QDIQGALQCYSR  243 (673)
Q Consensus       232 g~~~eA~~~~~~  243 (673)
                      |+++.|..+|.+
T Consensus       737 ~~~~~A~~~~~~  748 (814)
T 3mkq_A          737 GKFNLAFNAYWI  748 (814)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CchHHHHHHHHH
Confidence            666666555443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.31  E-value=1.6  Score=45.81  Aligned_cols=117  Identities=10%  Similarity=0.006  Sum_probs=84.9

Q ss_pred             CHHHHHHHHHHHHHhCCCC--H--H--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHcC
Q psy17691        131 QVSEAEECYNTALRLCPTH--A--D--SLNNLANIKREQGYIEEATRLYLKALEVFPE--F----AAAHSNLASVLQQQG  198 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~--~--~--a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~----~~~~~~la~~~~~~g  198 (673)
                      ..+.-++.+.++++..-+.  .  .  .-..+|.+|+..|+|.+|.+.+.+.++.-..  +    .+++..-..+|..++
T Consensus        74 ~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~  153 (394)
T 3txn_A           74 GTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALS  153 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Confidence            3344445555555432222  1  1  2347899999999999999999988875322  1    567778888999999


Q ss_pred             CHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q psy17691        199 KLTDALLHYKEAIRIQ---PSFA----DAYSNMGNTLK-EMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       199 ~~~eA~~~~~~al~~~---p~~~----~~~~~lg~~~~-~~g~~~eA~~~~~~Al~l  247 (673)
                      ++.++...|.++....   +.++    .....-|..+. ..++|.+|..+|-++++-
T Consensus       154 n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          154 NLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            9999999999987653   1223    34556788888 899999999999999854

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.13  E-value=0.72  Score=49.34  Aligned_cols=101  Identities=10%  Similarity=-0.042  Sum_probs=79.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH----H
Q psy17691        149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQ--PSFA----D  219 (673)
Q Consensus       149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~----~  219 (673)
                      ...++..+|..|.+.|++++|.++|.++.......   .+.+.....++...+++..+...++++-...  ..++    .
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            45578899999999999999999999988764332   6788888888999999999999999986652  2222    2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        220 AYSNMGNTLKEMQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p  249 (673)
                      .....|.++...++|.+|-.+|..++....
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            344567777888999999999988876543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.08  E-value=2  Score=46.54  Aligned_cols=142  Identities=13%  Similarity=0.006  Sum_probs=69.1

Q ss_pred             HHHcCCHHHHHHHHHHHHH---h--------CCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHhh-----
Q psy17691        126 VLLLIQVSEAEECYNTALR---L--------CPTHADSLNNLANIKREQGYIEEAT----------RLYLKALEV-----  179 (673)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~---~--------~p~~~~a~~~Lg~~~~~~g~~~eA~----------~~~~~al~~-----  179 (673)
                      ++..+++++|.++-...+.   +        ++-.+.+|+.++.++...|+..+..          ..+..+++.     
T Consensus       146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~  225 (523)
T 4b4t_S          146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH  225 (523)
T ss_dssp             ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence            3457889998888776651   1        3334667888888888888776532          233333333     


Q ss_pred             CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        180 FPE-FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF-------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       180 ~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~  251 (673)
                      ++. ....++.+-..|...+.|++|..+..++.  .|..       ...++.+|.++.-+++|.+|.+++..|++..|.+
T Consensus       226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            222 25677888899999999999999999984  4432       3467788999999999999999999999988754


Q ss_pred             H-------HHHHHHHHHHHHcCCCc
Q psy17691        252 A-------DAHSNLASIHKDSGKRG  269 (673)
Q Consensus       252 ~-------~a~~~La~~~~~~g~~~  269 (673)
                      .       .++..+..+-.-+|+..
T Consensus       304 ~~a~gfr~~a~K~lI~V~LLlG~iP  328 (523)
T 4b4t_S          304 SKSLGFLQQSNKLHCCIQLLMGDIP  328 (523)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred             hhhhhHHHHHHHHHHhHHhhcCCCC
Confidence            2       23333444445578876

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.49  E-value=2.4  Score=51.36  Aligned_cols=141  Identities=13%  Similarity=-0.013  Sum_probs=81.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---C--------------------
Q psy17691        124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV---F--------------------  180 (673)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~---~--------------------  180 (673)
                      ..+...++++-+.+    .+...|.++...+.+|.++...|++++|..+|+++-.-   +                    
T Consensus       820 ~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~  895 (1139)
T 4fhn_B          820 EKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ  895 (1139)
T ss_dssp             HHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred             HHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence            33445555554433    34556777777788888888888888888888776221   0                    


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691        181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF-A----DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH  255 (673)
Q Consensus       181 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~----~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~  255 (673)
                      ...+..|..+..++.+.+.++.+++..+.|++..+.+ .    ..|.++=..+...|+|++|...+...= -.....+..
T Consensus       896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~~~r~~cL  974 (1139)
T 4fhn_B          896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TTPLKKSCL  974 (1139)
T ss_dssp             CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HSSSCHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CHHHHHHHH
Confidence            1113345556666666677777777777777654322 2    145555556666677776666554321 112234455


Q ss_pred             HHHHHHHHHcCCCc
Q psy17691        256 SNLASIHKDSGKRG  269 (673)
Q Consensus       256 ~~La~~~~~~g~~~  269 (673)
                      ..|...+.+.|+.+
T Consensus       975 r~LV~~lce~~~~~  988 (1139)
T 4fhn_B          975 LDFVNQLTKQGKIN  988 (1139)
T ss_dssp             HHHHHHHHHHCCHH
T ss_pred             HHHHHHHHhCCChh
Confidence            55555555555543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=90.42  E-value=2.9  Score=49.07  Aligned_cols=94  Identities=9%  Similarity=-0.055  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEV----FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ-PSFADAYSNMGNT  227 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~  227 (673)
                      ++.+-..|.+.|+.++|.+.|++.-+.    ..-+...|+.|-..|.+.|+.++|.+.|++..+.. .-+...|+.+-.+
T Consensus       130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g  209 (1134)
T 3spa_A          130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC  209 (1134)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            444444444555555555544332211    12233444444444555555555555554444331 1123444444444


Q ss_pred             HHHcCC-HHHHHHHHHHHHH
Q psy17691        228 LKEMQD-IQGALQCYSRAIQ  246 (673)
Q Consensus       228 ~~~~g~-~~eA~~~~~~Al~  246 (673)
                      +.+.|+ .++|.+.|++..+
T Consensus       210 lcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          210 MGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             HHHHTCCHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHH
Confidence            444444 2344444444443

>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}

Probab=90.17  E-value=0.61  Score=48.36  Aligned_cols=54  Identities=13%  Similarity=0.084  Sum_probs=42.8

Q ss_pred             CeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhh
Q psy17691        572 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRV  629 (673)
Q Consensus       572 ~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~  629 (673)
                      .-+.+.|..+-.+..+.+..+|+++-.  -+|.+..  |.++|+|+|++-|.+...|.
T Consensus       242 ~~~~l~g~~sl~e~~ali~~a~~~i~~--DsG~~Hl--Aaa~g~P~v~lfg~t~p~~~  295 (349)
T 3tov_A          242 KPIVATGKFQLGPLAAAMNRCNLLITN--DSGPMHV--GISQGVPIVALYGPSNPFFY  295 (349)
T ss_dssp             CCEECTTCCCHHHHHHHHHTCSEEEEE--SSHHHHH--HHTTTCCEEEECSSCCHHHH
T ss_pred             ccEEeeCCCCHHHHHHHHHhCCEEEEC--CCCHHHH--HHhcCCCEEEEECCCCcccc
Confidence            346788999999999999999999763  2344444  88899999999998776554

>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*

Probab=90.09  E-value=0.77  Score=46.83  Aligned_cols=82  Identities=11%  Similarity=0.001  Sum_probs=52.1

Q ss_pred             EEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHh--c-CCCccc-cCCHHH
Q psy17691        574 ILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLAT--L-GCPELI-ARTHKE  649 (673)
Q Consensus       574 v~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~--~-gl~~~i-a~~~~~  649 (673)
                      +.+.|..+-.+..+.+..||+++-.=  +|.+. + |.++|+|+|++-|.+...|.+----..  + |-...+ .=++|+
T Consensus       236 ~~l~g~~sl~el~ali~~a~l~I~~D--SG~~H-l-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~~~~  311 (326)
T 2gt1_A          236 VEVLPKMSLEGVARVLAGAKFVVSVD--TGLSH-L-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANA  311 (326)
T ss_dssp             EEECCCCCHHHHHHHHHTCSEEEEES--SHHHH-H-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCCHHH
T ss_pred             ccccCCCCHHHHHHHHHhCCEEEecC--CcHHH-H-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCCHHH
Confidence            56789999999999999999997532  34444 4 666999999999987665542100000  0 100111 126777


Q ss_pred             HHHHHHHhcC
Q psy17691        650 YQDIAIRLGT  659 (673)
Q Consensus       650 yv~~a~~la~  659 (673)
                      -.+.+.++..
T Consensus       312 V~~~i~~~l~  321 (326)
T 2gt1_A          312 VKQFIEENAE  321 (326)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHHHH
Confidence            7777766654

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=89.59  E-value=4.4  Score=45.31  Aligned_cols=118  Identities=8%  Similarity=-0.102  Sum_probs=81.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691        128 LLIQVSEAEECYNTALRLCPTHAD----SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA  203 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~----a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  203 (673)
                      ..++.+.|...+.+..+...-+..    .+..++.-+...+...++...+.+......+ ......++......|+++.|
T Consensus       226 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~d~~~a  304 (618)
T 1qsa_A          226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRRGL  304 (618)
T ss_dssp             HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHHHH
T ss_pred             HhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHCCCHHHH
Confidence            345889999999887654433332    2223333334445466788888887654443 33344444455677999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        204 LLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       204 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  246 (673)
                      ...+++.-..........+.+|.++..+|+.++|..+|+++.+
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            9999775554445678899999999999999999999999875

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.15  E-value=1.6  Score=43.09  Aligned_cols=59  Identities=25%  Similarity=0.241  Sum_probs=36.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA  252 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~  252 (673)
                      +.+.|+.++|++..+..++.+|.+......+-.++.-.|+++.|.+.++.+.+++|+..
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            34456666666666666666666666666666666666666666666666666666554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.55  E-value=5.2  Score=42.80  Aligned_cols=98  Identities=15%  Similarity=0.161  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCH--
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFP--EF----AAAHSNLASVLQQQGKLTDALLHYKEAIR---IQPSFA--  218 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~p~~~--  218 (673)
                      ......|+.+|...|++.+|...++....-.-  .+    .+.+.....++...+++.+|...++++..   ..+..+  
T Consensus       137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence            34567889999999999999999988764311  11    56778888999999999999999998742   233333  


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691        219 --DAYSNMGNTLKEMQDIQGALQCYSRAIQI  247 (673)
Q Consensus       219 --~~~~~lg~~~~~~g~~~eA~~~~~~Al~l  247 (673)
                        ..+...|.++...++|.+|-.+|..+++.
T Consensus       217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              46677889999999999999999999865

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=87.94  E-value=4  Score=37.61  Aligned_cols=79  Identities=15%  Similarity=0.069  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL  228 (673)
Q Consensus       149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  228 (673)
                      +++..+.++   .+.|+++.|.+..++.     ++...|..||.....+|+++-|..+|+++-     +   +..+..+|
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~Ly   70 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFLY   70 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHHH
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHHH
Confidence            445555554   5689999999887765     678899999999999999999999998752     2   23444455


Q ss_pred             HHcCCHHHHHHHHHH
Q psy17691        229 KEMQDIQGALQCYSR  243 (673)
Q Consensus       229 ~~~g~~~eA~~~~~~  243 (673)
                      .-.|+.++-...-+.
T Consensus        71 ~~tg~~e~L~kla~i   85 (177)
T 3mkq_B           71 LVTGDVNKLSKMQNI   85 (177)
T ss_dssp             HHHTCHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHH
Confidence            555665544433333

>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A

Probab=85.37  E-value=0.5  Score=45.67  Aligned_cols=75  Identities=16%  Similarity=0.206  Sum_probs=50.0

Q ss_pred             eEEeccCcChHHHHHhcc-cccEEecCCCCCCcchhhhhhhcCCceeecCCCcc---hhhhHHHHHHhcCCCccccCCHH
Q psy17691        573 RILFSNVAAKEEHVRRGQ-LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL---ASRVAASQLATLGCPELIARTHK  648 (673)
Q Consensus       573 rv~~~~~~~~~~~~~~~~-~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l~~~gl~~~ia~~~~  648 (673)
                      ++...+..+  ++-..+. .||+++.   .+|.+|++|++++|+|.|..+.+..   ....-+..|...|.--.+  +.+
T Consensus       115 ~v~v~~f~~--~m~~~l~~~AdlvIs---haGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~--~~~  187 (224)
T 2jzc_A          115 KVIGFDFST--KMQSIIRDYSDLVIS---HAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC--APT  187 (224)
T ss_dssp             EEEECCSSS--SHHHHHHHHCSCEEE---SSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE--CSC
T ss_pred             eEEEeeccc--hHHHHHHhcCCEEEE---CCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc--CHH
Confidence            455556543  4445566 7999885   6899999999999999999987532   234446677777875333  444


Q ss_pred             HHHHHH
Q psy17691        649 EYQDIA  654 (673)
Q Consensus       649 ~yv~~a  654 (673)
                      +..+..
T Consensus       188 ~L~~~i  193 (224)
T 2jzc_A          188 ETGLIA  193 (224)
T ss_dssp             TTTHHH
T ss_pred             HHHHHH
Confidence            443333

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=85.07  E-value=14  Score=43.54  Aligned_cols=94  Identities=11%  Similarity=-0.041  Sum_probs=76.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRL----CPTHADSLNNLANIKREQGYIEEATRLYLKALEVF-PEFAAAHSNLASVLQ  195 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~  195 (673)
                      ..+..+.+.|+.++|...|++.-+.    -.-+...|+.|-..|.+.|++++|.+.|++..+.. .-+...|+.+-..+.
T Consensus       132 aLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glc  211 (1134)
T 3spa_A          132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG  211 (1134)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence            4446677899999999999775432    23467899999999999999999999999997753 335778888888899


Q ss_pred             HcCC-HHHHHHHHHHHHHhC
Q psy17691        196 QQGK-LTDALLHYKEAIRIQ  214 (673)
Q Consensus       196 ~~g~-~~eA~~~~~~al~~~  214 (673)
                      +.|+ .++|.+.+++..+..
T Consensus       212 K~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          212 RQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHTCCHHHHHHHHHHHHHHT
T ss_pred             hCCCcHHHHHHHHHHHHHcC
Confidence            9998 578999999988764

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=82.52  E-value=9.3  Score=40.02  Aligned_cols=92  Identities=12%  Similarity=-0.072  Sum_probs=72.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCC----HHHHH
Q psy17691        122 YIISVLLLIQVSEAEECYNTALRLCPT------HADSLNNLANIKREQGYIEEATRLYLKALEVF---PEF----AAAHS  188 (673)
Q Consensus       122 ~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~---p~~----~~~~~  188 (673)
                      .+..++..|+|.+|...+.+.++.-..      -.+++..-..+|...+++.++...|.++....   +.+    +....
T Consensus       105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~  184 (394)
T 3txn_A          105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL  184 (394)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence            345567899999999999998885221      15677788889999999999999999997653   122    34455


Q ss_pred             HHHHHHH-HcCCHHHHHHHHHHHHHh
Q psy17691        189 NLASVLQ-QQGKLTDALLHYKEAIRI  213 (673)
Q Consensus       189 ~la~~~~-~~g~~~eA~~~~~~al~~  213 (673)
                      .-|..+. ..++|.+|...|-++++.
T Consensus       185 ~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          185 QSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            6688888 899999999999988754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.12  E-value=8.7  Score=40.77  Aligned_cols=95  Identities=6%  Similarity=-0.104  Sum_probs=74.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHHHHHHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCP---THADSLNNLANIKREQGYIEEATRLYLKALEVFP--EF----AAAHSNLA  191 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p--~~----~~~~~~la  191 (673)
                      ..+..++..|++++|.++|.++.....   .-.+.+.....++...+++..+...++++.....  .+    .......|
T Consensus       136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g  215 (429)
T 4b4t_R          136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG  215 (429)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence            455666779999999999999988643   2367888889999999999999999999976522  22    23445567


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        192 SVLQQQGKLTDALLHYKEAIRIQP  215 (673)
Q Consensus       192 ~~~~~~g~~~eA~~~~~~al~~~p  215 (673)
                      .++...++|.+|...|-.++....
T Consensus       216 l~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          216 IHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhChHHHHHHHHHHHhccCC
Confidence            778889999999999988876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	673
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-33
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-29
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-29
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-29
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-09
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-33
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-20
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.003
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-18
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-15
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-17
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-12
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-16
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-10
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-16
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	5e-09
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-08
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	5e-15
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	7e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-13
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-12
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	8e-11
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-10
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	9e-10
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-12
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-09
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-12
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-10
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-11
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	6e-07
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-04
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-11
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	9e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	0.003
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	0.003
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-11
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-07
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	6e-04
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-10
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	0.004
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	3e-10
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	5e-10
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-09
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	8e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.002
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	7e-10
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-09
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	6e-05
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	9e-09
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	9e-08
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	5e-06
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	1e-05
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	4e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-08
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	3e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	0.002
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	0.004
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	3e-08
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	0.002
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	6e-08
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	2e-06
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	3e-04
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	4e-07

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (326), Expect = 2e-33
 Identities = 63/311 (20%), Positives = 112/311 (36%), Gaps = 24/311 (7%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
           + A     +    +P+       L++   +  +               P   +AY NL N
Sbjct: 16  EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN 75

Query: 48  ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
             KE+GQ+    +      R         I   ++          +Q+       +    
Sbjct: 76  VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135

Query: 108 FCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE 167
              +   +       +              CY  A+   P  A + +NL  +   QG I 
Sbjct: 136 CVRSDLGNLLKALGRLEEAK---------ACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186

Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
            A   + KA+ + P F  A+ NL +VL++      A+  Y  A+ + P+ A  + N+   
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246

Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLD 287
             E   I  A+  Y RAI++ P F DA+ NLA+  K+ G           +        D
Sbjct: 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306

Query: 288 AHSNLASIHKD 298
           + +NLA+I ++
Sbjct: 307 SLNNLANIKRE 317

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (297), Expect = 1e-29
 Identities = 80/342 (23%), Positives = 130/342 (38%), Gaps = 50/342 (14%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKP 61
           +D +      AI+  P   +AY NL N  KE+GQ      +   A  LK       ++  
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108

Query: 62  PYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----------- 110
                     G             +                   E               
Sbjct: 109 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168

Query: 111 ----------------------------ALSPDDGTTFSYIISVLLLI-QVSEAEECYNT 141
                                        L P+    +  + +VL        A   Y  
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228

Query: 142 ALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLT 201
           AL L P HA    NLA +  EQG I+ A   Y +A+E+ P F  A+ NLA+ L+++G + 
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288

Query: 202 DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI 261
           +A   Y  A+R+ P+ AD+ +N+ N  +E  +I+ A++ Y +A+++ P FA AHSNLAS+
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348

Query: 262 HKDSGK----RGFFIRT-DLNSAYFWLLLLDAHSNLASIHKD 298
            +  GK       +     ++  +      DA+SN+ +  K+
Sbjct: 349 LQQQGKLQEALMHYKEAIRISPTFA-----DAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 4e-29
 Identities = 68/236 (28%), Positives = 112/236 (47%), Gaps = 17/236 (7%)

Query: 35  QPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGN---RIRIGYVSSDFGNHPTSH 91
           QPNF  A+ NL      +G+I +      K    L P      I +G V  +      + 
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV-TLDPNFLDAYINLGNVLKEARIFDRAV 223

Query: 92  LMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHA 150
                          +   +LSP+       +  V      +  A + Y  A+ L P   
Sbjct: 224 ------------AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271

Query: 151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEA 210
           D+  NLAN  +E+G + EA   Y  AL + P  A + +NLA++ ++QG + +A+  Y++A
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331

Query: 211 IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
           + + P FA A+SN+ + L++   +Q AL  Y  AI+I+P FADA+SN+ +  K+  
Sbjct: 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 5e-29
 Identities = 118/234 (50%), Positives = 139/234 (59%), Gaps = 34/234 (14%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
            LAI  + +A+ L PNF DAY NL N LKE     F  A      A      ++  H   
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI--FDRA----VAAYLRALSLSPNHAVV 239

Query: 63  YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALS--PDDGTTF 120
           +             +  V  + G    +              ++ +  A+   P     +
Sbjct: 240 H-----------GNLACVYYEQGLIDLA--------------IDTYRRAIELQPHFPDAY 274

Query: 121 SYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV 179
             + + L     V+EAE+CYNTALRLCPTHADSLNNLANIKREQG IEEA RLY KALEV
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 180 FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD 233
           FPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSNMGNTLKEMQD
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (180), Expect = 1e-14
 Identities = 20/94 (21%), Positives = 39/94 (41%)

Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
            LA    Q G    A  H  +  R +P        + +   + + +  +    + AI+ N
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 249 PGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFW 282
           P  A+A+SNL +++K+ G+    I    ++    
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 2e-14
 Identities = 26/87 (29%), Positives = 42/87 (48%)

Query: 155 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ 214
            LA+ + + G  E A R  ++     P+       L+S+  Q  +L  +      AI+  
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 215 PSFADAYSNMGNTLKEMQDIQGALQCY 241
           P  A+AYSN+GN  KE   +Q A++ Y
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHY 90

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 7e-12
 Identities = 46/168 (27%), Positives = 78/168 (46%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
               AE       R  P +   L  L++I  +   ++ +      A++  P  A A+SNL
Sbjct: 14  DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
            +V +++G+L +A+ HY+ A+R++P F D Y N+   L    D++GA+Q Y  A+Q NP 
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133

Query: 251 FADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKD 298
                S+L ++ K  G+        L +         A SNL  +   
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 15/67 (22%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
           I+ A+  YR+A+E+ P F  A+ NLA+ L+++G+               P F DAY N+ 
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380

Query: 47  NALKEKG 53
           N LKE  
Sbjct: 381 NTLKEMQ 387

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 3e-33
 Identities = 35/288 (12%), Positives = 87/288 (30%), Gaps = 32/288 (11%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYK 64
           +    R+A  L+ +  D+    A     +      D Y  +           ++    Y 
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQA--LQDLYQKM-----------LVTDLEYA 51

Query: 65  YTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYII 124
             ++    +     + +        + L        N +R E+        +  +  Y  
Sbjct: 52  LDKK-VEQDLWNHAFKNQI------TTLQGQAKNRANPNRSEVQANLSLFLEAASGFY-- 102

Query: 125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA 184
                   ++  +   T   +        + L  I  +Q +     +    +        
Sbjct: 103 --------TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQ 152

Query: 185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA 244
               +L  + + + + + A  +Y+ A ++ PS    Y+ +        D    +  Y R+
Sbjct: 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212

Query: 245 IQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNL 292
           I +   F  A +NL      + +    ++T    + F    +  H ++
Sbjct: 213 IAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHV 260

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.3 bits (231), Expect = 1e-20
 Identities = 25/200 (12%), Positives = 49/200 (24%), Gaps = 40/200 (20%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS----- 188
           ++ +    A  L     DS    A +   +  +++    Y K L    E+A         
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL 60

Query: 189 ------NLASVLQQQGKL------------------------TDALLHYKEAIRIQPSFA 218
                 N  + LQ Q K                         T  L        +     
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120

Query: 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNS 278
              S +G    +       ++  S +            +L  I +   +         ++
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHA 178

Query: 279 AYFWLLLLDAHSNLASIHKD 298
           A         ++ LA +   
Sbjct: 179 AQLVPSNGQPYNQLAILASS 198

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 7e-05
 Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 15/84 (17%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
              A   YR A +L P+    Y  LA     KG                  FP A  NL 
Sbjct: 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227

Query: 47  NALKEKGQINVLHKPPYKYTRELA 70
            AL +  +     K  +  +  + 
Sbjct: 228 KALSKALESRDEVKTKWGVSDFIK 251

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 0.003
 Identities = 8/67 (11%), Positives = 15/67 (22%), Gaps = 17/67 (25%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
              +     +            +L +  + + Q               P+    Y  LA 
Sbjct: 137 SAIVKPQSSSC--SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAI 194

Query: 48  ALKEKGQ 54
               KG 
Sbjct: 195 LASSKGD 201

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 81.6 bits (201), Expect = 7e-18
 Identities = 18/130 (13%), Positives = 45/130 (34%), Gaps = 1/130 (0%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
           Q+ +A E    A++  P  A   ++   +    G  E A    ++++++FPE+    S L
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 191 ASVLQQQGKLTDALLHYKE-AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
             +++      D         +  +           N     QD +   +   +  ++  
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130

Query: 250 GFADAHSNLA 259
                 ++ +
Sbjct: 131 EKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 72.8 bits (178), Expect = 7e-15
 Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 1/108 (0%)

Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
            +G +++A  L ++A++  P+ A+  S+   +L   G    A     ++I++ P +    
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 222 SNMGNTLKEMQDIQGALQCYSRAIQI-NPGFADAHSNLASIHKDSGKR 268
           S + + +K  Q  +   Q  + A  +             ++   S   
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY 115

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 15/68 (22%)

Query: 2  IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
          +  A++    AI+  P       +    L   G                P +      L 
Sbjct: 12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 71

Query: 47 NALKEKGQ 54
          + +K    
Sbjct: 72 HLVKAAQA 79

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.1 bits (191), Expect = 4e-17
 Identities = 22/131 (16%), Positives = 41/131 (31%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A  L    N         EA   Y +A+   P  A  ++N A    +  +   AL   + 
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269
           A+ +      A+  +G    EM+    A+    RA  +         +         K+ 
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123

Query: 270 FFIRTDLNSAY 280
            +   +    +
Sbjct: 124 RWNSIEERRIH 134

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.4 bits (158), Expect = 1e-12
 Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 5/165 (3%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
           EA  CY  A+   P  A    N A    +    E+A     +ALE+  +   AH  L   
Sbjct: 22  EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81

Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
             +     +A+ + + A  +       + +          ++ A +    +I+      +
Sbjct: 82  QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP-----SALRIAKKKRWNSIEERRIHQE 136

Query: 254 AHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKD 298
           +  +       + +R   +     +           +  A I   
Sbjct: 137 SELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (106), Expect = 6e-06
 Identities = 11/147 (7%), Positives = 33/147 (22%), Gaps = 3/147 (2%)

Query: 91  HLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTH 149
                +               L         ++    L +    EA      A  L    
Sbjct: 46  LCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105

Query: 150 ADSLNNLAN--IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHY 207
             +  +     ++  +     +        E            A   ++  +       +
Sbjct: 106 RLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGH 165

Query: 208 KEAIRIQPSFADAYSNMGNTLKEMQDI 234
           ++   I+   A   +     + +M ++
Sbjct: 166 EDDGHIRAQQACIEAKHDKYMADMDEL 192

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 12/69 (17%), Positives = 15/69 (21%), Gaps = 15/69 (21%)

Query: 3  DLAIDTYRRAIELQPNFPDAYCNLANALKEKG---------------QPNFPDAYCNLAN 47
            A   Y RAI   P     Y N A    +                       A+  L  
Sbjct: 21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80

Query: 48 ALKEKGQIN 56
             E    +
Sbjct: 81 CQLEMESYD 89

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (191), Expect = 2e-16
 Identities = 39/265 (14%), Positives = 83/265 (31%), Gaps = 15/265 (5%)

Query: 2   IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKP 61
           +  A+  +  A++  P   +A+  L     E  Q     +         E    N     
Sbjct: 35  LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC---LELKPDNQTALM 91

Query: 62  PYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFS 121
               +       R     +       P    + +                          
Sbjct: 92  ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK----------R 141

Query: 122 YIISVLLLIQVSEAEECYNTALRLCPTHADSLNN--LANIKREQGYIEEATRLYLKALEV 179
            + S+L      E +E +  A+RL PT  D      L  +    G  ++A   +  AL V
Sbjct: 142 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 201

Query: 180 FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239
            P      + L + L    +  +A+  Y+ A+ +QP +  +  N+G +   +   + A++
Sbjct: 202 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261

Query: 240 CYSRAIQINPGFADAHSNLASIHKD 264
            +  A+ +            ++ ++
Sbjct: 262 HFLEALNMQRKSRGPRGEGGAMSEN 286

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 6e-10
 Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 2/138 (1%)

Query: 155 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ 214
                + ++G +  A  L+  A++  P+   A   L +   +  +   A+   +  + ++
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 215 PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRT 274
           P    A   +  +       + A +     ++  P +A   +         G      + 
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--GGAGLGPSKR 141

Query: 275 DLNSAYFWLLLLDAHSNL 292
            L S     L L+     
Sbjct: 142 ILGSLLSDSLFLEVKELF 159

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 18/124 (14%), Positives = 43/124 (34%)

Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
                  Q+G L +A+L ++ A++  P   +A+  +G T  E +    A+    R +++ 
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 249 PGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQII 308
           P    A   LA    +   +        +   +        +        + +    +I+
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143

Query: 309 HEFI 312
              +
Sbjct: 144 GSLL 147

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 15/134 (11%)

Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
            +  A   +  A++  P H ++   L   + E      A     + LE+ P+   A   L
Sbjct: 34  DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL 93

Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG---------------NTLKEMQDIQ 235
           A     +     A    ++ +R  P++A   +                   +L       
Sbjct: 94  AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 153

Query: 236 GALQCYSRAIQINP 249
              + +  A++++P
Sbjct: 154 EVKELFLAAVRLDP 167

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 9e-06
 Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 207 YKEAIRIQP-----SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI 261
           Y +  + +           +   G    +  D+  A+  +  A+Q +P   +A   L + 
Sbjct: 4   YDKGYQFEEENPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62

Query: 262 HKDSGKRGFFIR 273
             ++ +    I 
Sbjct: 63  QAENEQELLAIS 74

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.1 bits (191), Expect = 3e-16
 Identities = 29/278 (10%), Positives = 70/278 (25%), Gaps = 29/278 (10%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALK--------EKGQPNFPDAYCNLANALKE----- 51
            ++   + +   P+F   +      L+        E+           L + L+      
Sbjct: 48  VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY 107

Query: 52  ----KGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
                    +   P   + REL    R      + +   H   +              E+
Sbjct: 108 GTWHHRCWLLSRLPEPNWARELELCARF---LEADERNFHCWDYRRFVAAQAAVAPAEEL 164

Query: 108 FCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKRE 162
                    +  + +++ Y   +L  L    ++         +     + + N       
Sbjct: 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA----FF 220

Query: 163 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS 222
               +++   Y + L    E                   ++    +E             
Sbjct: 221 TDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 280

Query: 223 NMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS 260
            +   L  +   +  LQ +S    ++P  A    +L S
Sbjct: 281 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.2 bits (134), Expect = 5e-09
 Identities = 14/134 (10%), Positives = 37/134 (27%), Gaps = 13/134 (9%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA------- 186
              +      +L   +  +   +   ++     E    L  + L   P+FA         
Sbjct: 14  AEAKRLEREQKL-KLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREV 72

Query: 187 ---HSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM--QDIQGALQCY 241
                   S  +    +   L   +  +R+ P     + +    L  +   +    L+  
Sbjct: 73  LQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 132

Query: 242 SRAIQINPGFADAH 255
           +R ++ +       
Sbjct: 133 ARFLEADERNFHCW 146

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.6 bits (130), Expect = 2e-08
 Identities = 18/198 (9%), Positives = 45/198 (22%), Gaps = 32/198 (16%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
              +      I    +   ++   +  L +            L   +  K ++ ++    
Sbjct: 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK-ELELVQNAF 219

Query: 63  YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY 122
           +    + +     R     ++                  +  VE                
Sbjct: 220 FTDPNDQSAWFYHRWLLGRAEPLFR-------------CELSVEKSTV------------ 254

Query: 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
                 L    E+ +              ++  L        Y +E  + +     V P 
Sbjct: 255 ------LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308

Query: 183 FAAAHSNLASVLQQQGKL 200
            AA   +L S    +  +
Sbjct: 309 RAAYLDDLRSKFLLENSV 326

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 13/122 (10%), Positives = 37/122 (30%), Gaps = 10/122 (8%)

Query: 159 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA 218
             + +   E+A    L+  +    + +A   +    Q        L    + +   P FA
Sbjct: 4   RLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFA 63

Query: 219 DAYSNMGNTLKEMQD----------IQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR 268
             ++     L+ ++           ++  L      +++NP       +   +     + 
Sbjct: 64  TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123

Query: 269 GF 270
            +
Sbjct: 124 NW 125

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 5e-15
 Identities = 11/120 (9%), Positives = 32/120 (26%), Gaps = 5/120 (4%)

Query: 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH---SNLASVLQQQGKLTDALLHYKE 209
           +  + N       + +  + +           +     +      +    +   ++  +E
Sbjct: 2   MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE 61

Query: 210 AIRIQPS--FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
            +         D    +      +++ + AL+     +Q  P    A      I K   K
Sbjct: 62  LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 7e-07
 Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 2/68 (2%)

Query: 134 EAEECYNTALRLCPT--HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
           +        L         D +  LA         E+A +     L+  P+   A     
Sbjct: 54  KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113

Query: 192 SVLQQQGK 199
            + +   K
Sbjct: 114 LIDKAMKK 121

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 4e-13
 Identities = 20/183 (10%), Positives = 55/183 (30%), Gaps = 2/183 (1%)

Query: 111 ALSPDDGTTFSYIISVLLLIQVSE-AEECYNTALRLCPTHADSLNNLANIKRE-QGYIEE 168
             S      + Y  +VL   + SE A +    A+ L   +    +    + +  Q  + E
Sbjct: 37  IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE 96

Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
                   +E  P+      +   +++     +  L    + +        A+ +    +
Sbjct: 97  EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 156

Query: 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDA 288
           +E +     LQ   + ++ +       +    +  ++         +    Y   ++   
Sbjct: 157 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 216

Query: 289 HSN 291
             N
Sbjct: 217 PHN 219

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 1e-12
 Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 8/179 (4%)

Query: 142 ALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK-L 200
            +       D  +    + +     E A +L   A+E+             +L+   K L
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS 260
            + + +    I  QP     + +    ++ ++D    L+  +  +  +     A  +   
Sbjct: 95  HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 154

Query: 261 IHKDSGKRG-------FFIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFI 312
           + ++              ++ D+ +   W       SN    +  +V+   +Q   E I
Sbjct: 155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 213

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 8e-11
 Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 173 YLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ 232
            +  +    +F   +    +VLQ+  +   A    ++AI +  +    +      LK +Q
Sbjct: 32  PVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ 91

Query: 233 -DIQGALQCYSRAIQINPGFADAHSNLASIHKD 264
            D+   +   +  I+  P       +   + + 
Sbjct: 92  KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 124

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 3e-10
 Identities = 30/274 (10%), Positives = 65/274 (23%), Gaps = 41/274 (14%)

Query: 7   DTYRRAIELQPNFPDAYCNLANALKEKG---------------QPNFPDAYCNLANALKE 51
                 I     F D Y      L+                         +      LK 
Sbjct: 30  PNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKS 89

Query: 52  KGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
             +   LH+     T        I     +    +H    +            +      
Sbjct: 90  LQKD--LHEEMNYITA------IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 141

Query: 112 LSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG------Y 165
            + +          +          +  +  L+    +    N    +            
Sbjct: 142 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 201

Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
           +E   +  L+ +++ P   +A + L  +LQ +G L+       + + +QPS +  Y    
Sbjct: 202 LEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLI-- 258

Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
                       +  Y   ++      +   N A
Sbjct: 259 ---------AFLVDIYEDMLENQCDNKEDILNKA 283

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 9e-10
 Identities = 24/204 (11%), Positives = 63/204 (30%), Gaps = 16/204 (7%)

Query: 112 LSPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
           L+  + T + +   +L  +Q  + E        +   P +    ++   +        + 
Sbjct: 72  LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE 131

Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
                  L    +   A  +   V+Q+     + L +  + ++        ++     + 
Sbjct: 132 LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 191

Query: 230 EMQDIQG------ALQCYSRAIQINPGFADAHSNLASIHKDSG--------KRGFFIRTD 275
                         +Q     I++ P    A + L  I +D G         +   ++  
Sbjct: 192 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPS 251

Query: 276 LNSAYFWLLLLDAHSNLASIHKDS 299
            +S Y    L+D + ++     D+
Sbjct: 252 HSSPYLIAFLVDIYEDMLENQCDN 275

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 66.4 bits (160), Expect = 1e-12
 Identities = 28/263 (10%), Positives = 62/263 (23%), Gaps = 19/263 (7%)

Query: 12  AIELQPNFPD----AYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTR 67
           A+ LQP        A      A +                     G    L +  +    
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA-LARNDFSQAL 64

Query: 68  ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVL 127
            + P        V +  G + T             S +E+             +      
Sbjct: 65  AIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY--- 117

Query: 128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA--A 185
              +   A++      +  P        L   +++    +    L     +   E     
Sbjct: 118 -GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN 176

Query: 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI 245
                   + +Q  +        +   +    ++    +G     + D+  A   +  A+
Sbjct: 177 IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236

Query: 246 QINPGFADAHSN----LASIHKD 264
             N      H      L+ + +D
Sbjct: 237 ANNVHNFVEHRYALLELSLLGQD 259

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 26/205 (12%), Positives = 59/205 (28%), Gaps = 8/205 (3%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
            LA + + +A+ ++P+ P+ +  L   L + G  +      +    L        L++  
Sbjct: 54  ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 113

Query: 63  Y----KYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGT 118
                   +              +D       +L +          V    +  S  +  
Sbjct: 114 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW 173

Query: 119 TFSYIISVLLLI----QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYL 174
            ++ +   L  I     +   +        L    +++   L       G ++ AT L+ 
Sbjct: 174 GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 233

Query: 175 KALEVFPEFAAAHSNLASVLQQQGK 199
            A+         H      L   G+
Sbjct: 234 LAVANNVHNFVEHRYALLELSLLGQ 258

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 7e-12
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 8/121 (6%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A     L N   ++   + A + Y KA E+ P      +N A+V  ++G         ++
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 210 AIRIQPSFADAY-------SNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH 262
           AI +     + Y       + +GN+  + +  + A+  Y++++  +    D         
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAE 122

Query: 263 K 263
           K
Sbjct: 123 K 123

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 4e-10
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH------ 187
            A + Y+ A  L PT+   + N A +  E+G   +   L  KA+EV  E    +      
Sbjct: 22  TALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81

Query: 188 -SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD 233
            + + +   ++ K  DA+  Y +++    +  D         K +++
Sbjct: 82  YARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILKE 127

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 4e-08
 Identities = 15/84 (17%), Positives = 30/84 (35%)

Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
           A     L +   ++     AL HY +A  + P+     +N      E  D     +   +
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 244 AIQINPGFADAHSNLASIHKDSGK 267
           AI++     + +  +A  +   G 
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGN 87

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 5e-06
 Identities = 13/79 (16%), Positives = 31/79 (39%)

Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLN 277
           A     +GN   + +D   AL+ Y +A +++P      +N A+++ + G           
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 278 SAYFWLLLLDAHSNLASIH 296
           +        + +  +A  +
Sbjct: 64  AIEVGRENREDYRQIAKAY 82

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 1e-11
 Identities = 19/114 (16%), Positives = 45/114 (39%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
            + L    N     G I++A + Y +A+++ P     +SN ++   ++G    A     +
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
            + ++P +   YS     L+ +   + A + Y   ++           L ++  
Sbjct: 63  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 6e-07
 Identities = 18/93 (19%), Positives = 46/93 (49%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
           +A +CY+ A++L P +    +N +    ++G  ++A     K +++ P++   +S  A+ 
Sbjct: 21  DALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 80

Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
           L+   +  +A   Y+E ++ + +       + N
Sbjct: 81  LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 113

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 22/116 (18%), Positives = 32/116 (27%), Gaps = 4/116 (3%)

Query: 46  ANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRV 105
            N LKEKG  N            L   +        +       S               
Sbjct: 3   VNELKEKG--NKALSV-GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 59

Query: 106 EIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIK 160
                 L PD G  +S   + L  L +  EA+  Y   L+    +      L N++
Sbjct: 60  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 1e-11
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 16/135 (11%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKA----------------LEVFPEFAAAHSNLASV 193
           ++ L N+ N   +    E A + Y K                  ++ P   +   N+ + 
Sbjct: 27  SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86

Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
             +      A+    EA+ I PS   A        + +++   AL    +A +I P    
Sbjct: 87  KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146

Query: 254 AHSNLASIHKDSGKR 268
             + L  + +    +
Sbjct: 147 IQAELLKVKQKIKAQ 161

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 12/163 (7%), Positives = 41/163 (25%), Gaps = 5/163 (3%)

Query: 9   YRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRE 68
           +    ++     D    ++  LK  G     + +    N      +   + +        
Sbjct: 9   FPEDADVDLKDVDKILLISEDLKNIG-----NTFFKSQNWEMAIKKYTKVLRYVEGSRAA 63

Query: 69  LAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLL 128
               +  ++  V+     +  +  ++                    +    +        
Sbjct: 64  AEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG 123

Query: 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATR 171
           L +  +A      A  + P        L  +K++    ++  +
Sbjct: 124 LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 166

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 1/106 (0%)

Query: 99  MHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTA-LRLCPTHADSLNNLA 157
               +  +     L P   +    I +  L +   +         L + P++  +L   A
Sbjct: 59  GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRA 118

Query: 158 NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA 203
              +     ++A     KA E+ PE  A  + L  V Q+     D 
Sbjct: 119 QGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 6/33 (18%), Positives = 12/33 (36%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ 35
           D A+   ++A E+ P        L    ++   
Sbjct: 128 DQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 60.0 bits (144), Expect = 3e-11
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 15/134 (11%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVF---------------PEFAAAHSNLASVL 194
           A  +     +  + G   +A   Y K +                      AA  NLA   
Sbjct: 15  AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74

Query: 195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA 254
            +  + T A+    +A+ +  +        G     M + + A   + + +++NP    A
Sbjct: 75  LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134

Query: 255 HSNLASIHKDSGKR 268
              +    K + + 
Sbjct: 135 RLQIFMCQKKAKEH 148

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 13/117 (11%), Positives = 29/117 (24%), Gaps = 15/117 (12%)

Query: 134 EAEECYNTALRLC---------------PTHADSLNNLANIKREQGYIEEATRLYLKALE 178
           +A   Y   +                       +  NLA    +     +A     KAL 
Sbjct: 33  QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 92

Query: 179 VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ 235
           +                   +   A   +++ + + P    A   +    K+ ++  
Sbjct: 93  LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHN 149

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 22/167 (13%), Positives = 48/167 (28%), Gaps = 23/167 (13%)

Query: 25  NLANALKEKG-----QPNFPDA---YCNLANALKEKGQINVLHKPPYKYTRELAPGNRIR 76
             A  +KEKG        +  A   Y  + + L+ +  ++       +     A  N   
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72

Query: 77  IGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAE 136
                 ++                N+  +     A               LL+ +   A+
Sbjct: 73  CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ--------------LLMNEFESAK 118

Query: 137 ECYNTALRLCPTHADSLNNLANIKREQG-YIEEATRLYLKALEVFPE 182
             +   L + P +  +   +   +++   + E   R Y    + F E
Sbjct: 119 GDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAE 165

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 10/58 (17%), Positives = 19/58 (32%)

Query: 146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA 203
              +   L      +      E A   + K LEV P+  AA   +    ++  +  + 
Sbjct: 94  DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER 151

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 5/33 (15%), Positives = 13/33 (39%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ 35
           + A   + + +E+ P    A   +    K+  +
Sbjct: 115 ESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE 147

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 57.3 bits (137), Expect = 2e-10
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 16/130 (12%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----------------AAAHSNLASV 193
           A  +    N   ++  I EA   Y +AL+ F                    + + NLA+ 
Sbjct: 17  AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76

Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
             +      A+ H  + ++I  +   A   +G        ++ A +   +A  +NP   D
Sbjct: 77  YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136

Query: 254 AHSNLASIHK 263
             ++      
Sbjct: 137 IRNSYELCVN 146

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ 35
           + A +   +A  L PN  D   +    + +  +
Sbjct: 118 EEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 150

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 3e-10
 Identities = 25/121 (20%), Positives = 46/121 (38%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A+ L   AN   +    E A + Y +A+E+ P  A  + N +    +      AL     
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269
           AI +   +   Y     +   +   + AL+ Y   +++ P   DA       +K   ++ 
Sbjct: 70  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129

Query: 270 F 270
           F
Sbjct: 130 F 130

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 5e-10
 Identities = 17/142 (11%), Positives = 46/142 (32%), Gaps = 19/142 (13%)

Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
            A + ++        H+    N+  +      + EA + + +++      A A+     +
Sbjct: 23  GALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 79

Query: 194 LQQQGKLTDALLHYKEAI----------------RIQPSFADAYSNMGNTLKEMQDIQGA 237
             Q  K   A+   KEA+                + +    +   N+     + ++ + A
Sbjct: 80  YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 139

Query: 238 LQCYSRAIQINPGFADAHSNLA 259
            +  + A  +      +  + A
Sbjct: 140 EEQLALATSMKSEPRHSKIDKA 161

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 3e-09
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 4/115 (3%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
           A SL N   +  ++   + A   +          +    N+  +      +T+A   +  
Sbjct: 5   AISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTR 61

Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG-FADAHSNLASIHK 263
           +I      A AY   G    + +    A++    A+    G     +  L    K
Sbjct: 62  SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK 116

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 8e-05
 Identities = 21/213 (9%), Positives = 52/213 (24%), Gaps = 46/213 (21%)

Query: 5   AIDTYRRAIELQPNFPDAYCNLANALK--EKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
           AI  +   +           +   AL      Q        N+         +    K  
Sbjct: 5   AISLWNEGVLAA-----DKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAF 59

Query: 63  YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY 122
            +            I         +    ++      ++ + ++    AL    G     
Sbjct: 60  TRS-----------INRDKHLAVAYFQRGMLYYQTEKYDLA-IKDLKEALIQLRG----- 102

Query: 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
                     ++  +     L+      + L N+A +  ++   ++A      A  +  E
Sbjct: 103 ----------NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152

Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
                        +  K+  A+    +    +P
Sbjct: 153 ------------PRHSKIDKAMECVWKQKLYEP 173

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 216 SFADAYS--NMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFI 272
           S  +A S  N G    + +D +GAL  +S    +    +    N+  ++          
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAE 56

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 58.8 bits (140), Expect = 7e-10
 Identities = 28/321 (8%), Positives = 68/321 (21%), Gaps = 53/321 (16%)

Query: 2   IDLAIDTYRRAIELQPNFPD-----AYCNLANALKEKGQ--------------------- 35
            D A    + A+E  P         A   L   L  KG+                     
Sbjct: 28  PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 87

Query: 36  PNFPDAYCNLANALKEKGQINV----------LHKPPYKYTRELAPGNRIRIGYVSSDFG 85
                +    +  L  +G +            L    +     +          +   + 
Sbjct: 88  HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 147

Query: 86  NHPTSHLM-QSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALR 144
               +    +S   + +  + +     L+     + +         Q++  E        
Sbjct: 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 207

Query: 145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----AAAHSNLASVLQQQGKL 200
                +++        +  G    A        +              N+A      G+ 
Sbjct: 208 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF 267

Query: 201 TDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG---- 250
             A +  +E                    +     +      A +    A+++       
Sbjct: 268 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 327

Query: 251 --FADAHSNLASIHKDSGKRG 269
             F      +A   +   +  
Sbjct: 328 SHFVIEGEAMAQQLRQLIQLN 348

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 58.4 bits (139), Expect = 1e-09
 Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 11/153 (7%)

Query: 142 ALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE-----FAAAHSNLASVLQQ 196
            +R    HA+     A +    G  +EA RL   ALE  P         A S L  VL  
Sbjct: 4   DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 63

Query: 197 QGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
           +G+LT +L   ++  ++            +       L     +Q A +   +A Q+   
Sbjct: 64  KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123

Query: 251 FADAHSNLASIHKDSGKRGFFIRTDLNSAYFWL 283
                  +         +  +    L+ A    
Sbjct: 124 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 156

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 15/100 (15%)

Query: 127 LLLIQVSEAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEV- 179
           +LL +   AE                     +L  L  +  + G   +A R+ L AL++ 
Sbjct: 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 321

Query: 180 --------FPEFAAAHSNLASVLQQQGKLTDALLHYKEAI 211
                   F     A +     L Q   L +   H  + I
Sbjct: 322 NRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRI 361

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 18/151 (11%), Positives = 39/151 (25%), Gaps = 19/151 (12%)

Query: 131 QVSEAEECYNTALRLCPT-----HADSLNNLANIKREQGYIEEATRLYLKALEV------ 179
              EAE     AL   P         + + L  +   +G +  +  L  +  ++      
Sbjct: 27  NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 86

Query: 180 FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP--------SFADAYSNMGNTLKEM 231
           +     +    + +L  QG L  A    ++A ++                      L   
Sbjct: 87  WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 146

Query: 232 QDIQGALQCYSRAIQINPGFADAHSNLASIH 262
             +  A       I++   +           
Sbjct: 147 ARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.0 bits (131), Expect = 9e-09
 Identities = 24/245 (9%), Positives = 64/245 (26%), Gaps = 27/245 (11%)

Query: 21  DAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV 80
           D     A   + +       A  +   A   + +     +    Y         +     
Sbjct: 38  DLCVQAATIYRLRK--ELNLAGDSFLKAADYQKKAGNEDEAGNTY---------VEAYKC 86

Query: 81  SSDFGNHPTSHLM--QSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEEC 138
               GN   +      ++    ++ +                + +      I   E    
Sbjct: 87  FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE 146

Query: 139 YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ--- 195
           +    +            A++K   G   EA+ +Y K ++       +  +L        
Sbjct: 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206

Query: 196 ----QQGKLTDALLHYKEAIRIQPSFADA-----YSNMGNTLKEM--QDIQGALQCYSRA 244
                      A    +E     P+FAD+       ++ + + E   + +    + +   
Sbjct: 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266

Query: 245 IQINP 249
           ++++ 
Sbjct: 267 MRLDK 271

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (123), Expect = 9e-08
 Identities = 25/246 (10%), Positives = 68/246 (27%), Gaps = 31/246 (12%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKG----QINVL 58
           +LA D++ +A + Q              K   +    + Y       K  G     ++ L
Sbjct: 54  NLAGDSFLKAADYQK-------------KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100

Query: 59  HKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGT 118
                 +T            +   +   +      +++              +++  +  
Sbjct: 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160

Query: 119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHA-------DSLNNLANIKREQGYIEEATR 171
                    L  Q  EA + Y+  ++    +        D        +        A R
Sbjct: 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220

Query: 172 LYLKALEVFPEFAAAH-----SNLASVLQQQ--GKLTDALLHYKEAIRIQPSFADAYSNM 224
              +     P FA +       +L   + +    +L++    +   +R+        + +
Sbjct: 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280

Query: 225 GNTLKE 230
             ++++
Sbjct: 281 KESIQQ 286

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (109), Expect = 5e-06
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 6/106 (5%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVF------PEFAAAHSNLASVLQQQGKLTDA 203
           AD     A I R +  +  A   +LKA +         E    +       +  G   +A
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96

Query: 204 LLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
           +   + AI+I               +  + ++  L  Y++AI    
Sbjct: 97  VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 22/124 (17%)

Query: 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
           +S+  E    A +     +  +   +    +    EEA  L                  A
Sbjct: 1   ISDPVELLKRAEKKGVPSSGFMKLFSG--SDSYKFEEAADLC--------------VQAA 44

Query: 192 SVLQQQGKLTDALLHYKEAIRIQ------PSFADAYSNMGNTLKEMQDIQGALQCYSRAI 245
           ++ + + +L  A   + +A   Q          + Y       K   +   A+     AI
Sbjct: 45  TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104

Query: 246 QINP 249
           QI  
Sbjct: 105 QIFT 108

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (102), Expect = 4e-05
 Identities = 8/66 (12%), Positives = 18/66 (27%), Gaps = 13/66 (19%)

Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN------PGFADAHSNLAS 260
           ++EA       AD         +  +++  A   + +A              + +     
Sbjct: 33  FEEA-------ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYK 85

Query: 261 IHKDSG 266
             K  G
Sbjct: 86  CFKSGG 91

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 1e-08
 Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 15/129 (11%)

Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVF---------------PEFAAAHSNLASVL 194
           +  +     +  ++G  ++A   Y K +                      A+H NLA   
Sbjct: 13  STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72

Query: 195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA 254
            +    + A+    +A+ +  +     S  G     + D + A   + + +Q+ P    A
Sbjct: 73  LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132

Query: 255 HSNLASIHK 263
            + LA   +
Sbjct: 133 KTQLAVCQQ 141

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 18/163 (11%), Positives = 44/163 (26%), Gaps = 19/163 (11%)

Query: 27  ANALKEKGQPNFPDAYCNLANALKEKGQ----INVLHK--PPYKYTRELAPGNRIRIGYV 80
           +  +KE+G                ++G+    +    K     +Y    +     +   +
Sbjct: 13  STIVKERG------------TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

Query: 81  SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYN 140
                 +     ++                  S ++        + L +     A   + 
Sbjct: 61  RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 120

Query: 141 TALRLCPTHADSLNNLANIKREQG-YIEEATRLYLKALEVFPE 182
             L+L P +  +   LA  ++     +    +LY    E   E
Sbjct: 121 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 163

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 13/100 (13%)

Query: 138 CYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ 197
             N AL L   +   L+            E A   + K L+++P   AA + LA   Q+ 
Sbjct: 84  SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143

Query: 198 GKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA 237
            +            +        Y+NM   L E ++   A
Sbjct: 144 RR-------QLAREK------KLYANMFERLAEEENKAKA 170

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 3   DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDA--YCNLANALKEKGQ 54
           +LA   +++ ++L PN   A   LA   +   +    +   Y N+   L E+  
Sbjct: 113 ELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEEN 166

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 51.3 bits (121), Expect = 3e-08
 Identities = 17/144 (11%), Positives = 39/144 (27%), Gaps = 25/144 (17%)

Query: 150 ADSLNNL--ANIKREQGYIEEATRLYLKALEVFPEFAA------------AHSNLASVLQ 195
             +   L  A  +   G  +EA     +A+E+                   H+ LA  L 
Sbjct: 7   VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 66

Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYS-----------NMGNTLKEMQDIQGALQCYSRA 244
                 +AL    +A+       +              +    L  +     A+  + + 
Sbjct: 67  GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126

Query: 245 IQINPGFADAHSNLASIHKDSGKR 268
           +++             + + +  R
Sbjct: 127 VEMIEERKGETPGKERMMEVAIDR 150

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 14/66 (21%)

Query: 215 PSFADAYSNMGNTLKEMQ--DIQGALQCYSRAIQINPGFAD------------AHSNLAS 260
                AY  + +  +++   +   A     RA++I+                  H+ LA 
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAE 63

Query: 261 IHKDSG 266
                 
Sbjct: 64  ALAGLR 69

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 6e-08
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 15/103 (14%)

Query: 172 LYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI-------QPSFADAYSNM 224
           ++L A + F         L  V   +       L  ++A+R                  +
Sbjct: 1   MFLTAEDSF--------ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYL 52

Query: 225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
              + +  D+  AL    + ++++P    A+ NL        K
Sbjct: 53  SYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 135 AEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL 194
           AE+ +                 A+    + ++E+A R   +      +  +    L+  +
Sbjct: 5   AEDSFELGK--------VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAV 56

Query: 195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM 231
            QQG L  ALL  K+ + + P    A  N+      M
Sbjct: 57  YQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM 93

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 133 SEAEECYNTALRLC-------PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA 185
              E     ALR               L+ L+    +QG +++A  L  K LE+ PE   
Sbjct: 22  YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81

Query: 186 AHSNLASVLQQQGK 199
           A+ NL        K
Sbjct: 82  ANGNLKYFEYIMAK 95

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.3 bits (114), Expect = 4e-07
 Identities = 12/117 (10%), Positives = 25/117 (21%), Gaps = 12/117 (10%)

Query: 151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEA 210
            +           G  E+A+R    AL  +                     D       A
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR------------DFQFVEPFA 59

Query: 211 IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
             +      A++               +         +P      + L + +  S +
Sbjct: 60  TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	673
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.94
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.84
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.82
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.8
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.73
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.68
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.63
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.61
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.61
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.58
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.53
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.5
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.49
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.46
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.46
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.46
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.45
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.44
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.43
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.41
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.41
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.41
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.4
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.39
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.37
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.37
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.36
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.36
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.36
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.34
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.3
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.29
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.2
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.16
d2iw1a1	370	Lipopolysaccharide core biosynthesis protein RfaG	99.14
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.14
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.14
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.11
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.11
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.97
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.95
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.86
d2f9fa1	166	First mannosyl transferase WbaZ {Archaeoglobus ful	98.84
d2bfwa1	196	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	98.78
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.77
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.67
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.63
d1rzua_	477	Glycogen synthase 1, GlgA {Agrobacterium tumefacie	98.57
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.54
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	98.53
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.25
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.08
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.0
d1uqta_	456	Trehalose-6-phosphate synthase, OtsA {Escherichia	97.81
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.55
d1rrva_	401	TDP-vancosaminyltransferase GftD {Amycolatopsis or	97.26
d1iira_	401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	96.97
d2c1xa1	450	UDP glucose:flavonoid 3-o-glucosyltransferase {Gra	96.95
d1pn3a_	391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	96.65
d2pq6a1	473	(Iso)flavonoid glycosyltransferase {Medicago trunc	96.56
d2vcha1	471	Hydroquinone glucosyltransferase {Thale cress (Ara	96.41
d2acva1	461	Triterpene UDP-glucosyl transferase UGT71G1 {Medic	95.92
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	94.84
d1v4va_	373	UDP-N-acetylglucosamine 2-epimerase {Thermus therm	94.75
d1o6ca_	377	UDP-N-acetylglucosamine 2-epimerase {Bacillus subt	93.3
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	89.82
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	88.16
d1f6da_	376	UDP-N-acetylglucosamine 2-epimerase {Escherichia c	84.29
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	80.58

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-24  Score=227.75  Aligned_cols=285  Identities=27%  Similarity=0.325  Sum_probs=220.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      +|++|++.|+++++.+|+++.++..+|.+|..+|+               |+.+.+++.+|.++...|++++|.. .+..
T Consensus        14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~-~~~~   92 (388)
T d1w3ba_          14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE-HYRH   92 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccc-cccc
Confidence            58999999999999999999999999999999997               8889999999999999999999875 3344


Q ss_pred             HhhcCCCchh---hhhhhhhhcCCCccc-------------------------------------------------c--
Q psy17691         66 TRELAPGNRI---RIGYVSSDFGNHPTS-------------------------------------------------H--   91 (673)
Q Consensus        66 ~~~l~p~~~~---~l~~~~~~l~~~~~a-------------------------------------------------~--   91 (673)
                      .....+....   ...............                                                 .  
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (388)
T d1w3ba_          93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW  172 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHH
Confidence            4444433310   000000000000000                                                 0  


Q ss_pred             ---cccccCCCCchhHHHHH--HHhcCCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691         92 ---LMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGY  165 (673)
Q Consensus        92 ---~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~  165 (673)
                         ............+...+  .+..+|++..++...+. +...|++++|+..|+++.+.+|.....+..+|.++...|+
T Consensus       173 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  252 (388)
T d1w3ba_         173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL  252 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCC
Confidence               00000111122233322  44567888777755544 4458888888888888888888888888889999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691        166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI  245 (673)
Q Consensus       166 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al  245 (673)
                      +++|+..|+++++++|+++.++.++|.++...|++++|++.+++++...|.+...+..+|.++..+|++++|+.+|++++
T Consensus       253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  332 (388)
T d1w3ba_         253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL  332 (388)
T ss_dssp             HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHHHH
Q psy17691        246 QINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLLLL  286 (673)
Q Consensus       246 ~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~~  286 (673)
                      +++|+++.++.++|.++...|+++         ++++|+++.++.++|.+
T Consensus       333 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~  382 (388)
T d1w3ba_         333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT  382 (388)
T ss_dssp             TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999887         78889999998888854

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-24  Score=225.45  Aligned_cols=252  Identities=31%  Similarity=0.468  Sum_probs=221.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------------------------------------
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------------------------------------   35 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------------------------------------   35 (673)
                      ++++|+..|+++++++|+++.+|..+|.+|..+|+                                             
T Consensus        48 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (388)
T d1w3ba_          48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA  127 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            58999999999999999999999999999999996                                             


Q ss_pred             --------------------------------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCch---
Q psy17691         36 --------------------------------------PNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNR---   74 (673)
Q Consensus        36 --------------------------------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~---   74 (673)
                                                            |+.+..+..+|..+...+++++|.. .++.+..+.|++.   
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~  206 (388)
T d1w3ba_         128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH-HFEKAVTLDPNFLDAY  206 (388)
T ss_dssp             HHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHCTTCHHHH
T ss_pred             cccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHH-HHHHHHHhCcccHHHH
Confidence                                                  4556777888888888888888775 5666677777664   


Q ss_pred             hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691         75 IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHAD  151 (673)
Q Consensus        75 ~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~  151 (673)
                      ..++.++...++..              +++..+  .....+.....+..+ ..+...|++++|+..|+++++++|+++.
T Consensus       207 ~~l~~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  272 (388)
T d1w3ba_         207 INLGNVLKEARIFD--------------RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD  272 (388)
T ss_dssp             HHHHHHHHTTTCTT--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHhhhhhccccHH--------------HHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            44566666655543              333333  445677777777554 5566799999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        152 SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM  231 (673)
Q Consensus       152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~  231 (673)
                      ++..+|.++...|++++|++.+++++...|.+...+..+|.++...|++++|++.|+++++++|+++.++.++|.+|.++
T Consensus       273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  352 (388)
T d1w3ba_         273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        232 QDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK  267 (673)
Q Consensus       232 g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~  267 (673)
                      |++++|+.+|+++++++|++++++.+||.+|.++|+
T Consensus       353 g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         353 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999885

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-22  Score=208.29  Aligned_cols=241  Identities=19%  Similarity=0.211  Sum_probs=194.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY   65 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~   65 (673)
                      ++++|+..|+++++.+|+++.+|..+|.++..+|+               |+....+..+|.++...|++++|.. .++.
T Consensus        34 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~  112 (323)
T d1fcha_          34 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE-ILRD  112 (323)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccccccc-chhh
Confidence            58999999999999999999999999999999997               7888899999999999999998875 4555


Q ss_pred             HhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691         66 TRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRL  145 (673)
Q Consensus        66 ~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  145 (673)
                      +....|..............                           .............+...+.+.+|+..|++++++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  165 (323)
T d1fcha_         113 WLRYTPAYAHLVTPAEEGAG---------------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  165 (323)
T ss_dssp             HHHTSTTTGGGCC------------------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccchHHHHHhhhhhhh---------------------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            55555543211110000000                           000011111223344566889999999999999


Q ss_pred             CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        146 CPTH--ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN  223 (673)
Q Consensus       146 ~p~~--~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  223 (673)
                      +|+.  +.++..+|.++..+|++++|+..|+++++.+|++..+|.++|.++..+|++++|+++|+++++++|+++.++.+
T Consensus       166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  245 (323)
T d1fcha_         166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN  245 (323)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHH
Confidence            9874  77899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHcCCCc
Q psy17691        224 MGNTLKEMQDIQGALQCYSRAIQINPGFADA-----------HSNLASIHKDSGKRG  269 (673)
Q Consensus       224 lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a-----------~~~La~~~~~~g~~~  269 (673)
                      +|.+|.++|++++|+.+|++|++++|++..+           |.+++.++..+|+.+
T Consensus       246 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d  302 (323)
T d1fcha_         246 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  302 (323)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999987654           455666766666654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.1e-20  Score=188.92  Aligned_cols=157  Identities=11%  Similarity=0.071  Sum_probs=137.9

Q ss_pred             HhcCCCChhHHHHHHHH-HHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy17691        110 YALSPDDGTTFSYIISV-LLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH  187 (673)
Q Consensus       110 ~~l~p~~~~~~~~~~~~-~~~g-~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  187 (673)
                      +.++|++..+|...+.. ...| ++++|+..++++++.+|++..+|.++|.++..+|++++|+..++++++++|++..+|
T Consensus        70 i~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~  149 (315)
T d2h6fa1          70 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW  149 (315)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHH
Confidence            34567777777665544 4455 589999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD------IQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       188 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      .++|.++...|++++|++.|+++++++|++..+|+++|.++...++      +++|+.++.++++++|++..+|.+++.+
T Consensus       150 ~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~l  229 (315)
T d2h6fa1         150 QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI  229 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888776      6789999999999999999999999988


Q ss_pred             HHHcC
Q psy17691        262 HKDSG  266 (673)
Q Consensus       262 ~~~~g  266 (673)
                      +...|
T Consensus       230 l~~~~  234 (315)
T d2h6fa1         230 LQDRG  234 (315)
T ss_dssp             HTTTC
T ss_pred             HHhcC
Confidence            76554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.2e-19  Score=187.52  Aligned_cols=179  Identities=10%  Similarity=0.035  Sum_probs=165.3

Q ss_pred             hcCCCChhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHH
Q psy17691        111 ALSPDDGTTFSYIISVL-LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG-YIEEATRLYLKALEVFPEFAAAHS  188 (673)
Q Consensus       111 ~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~  188 (673)
                      ..+|+...++.+.+.++ +.+.+++|+.+++++++++|++..+|+++|.++...| ++++|+..++++++.+|++..+|+
T Consensus        37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~  116 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH  116 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence            34667777886666555 5789999999999999999999999999999999987 599999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       189 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      ++|.++..+|++++|++.++++++++|++..+|.++|.++..+|++++|+++|+++++++|.+..+|.+++.++...+++
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             c---------------cccCCCCHHHHHHHHHHhhc
Q psy17691        269 G---------------FFIRTDLNSAYFWLLLLDAH  289 (673)
Q Consensus       269 ~---------------l~l~p~~~~a~~~l~~~~~~  289 (673)
                      .               ++++|++..++++++.+..+
T Consensus       197 ~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~  232 (315)
T d2h6fa1         197 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD  232 (315)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred             chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence            4               78899999999998866544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.8e-18  Score=177.91  Aligned_cols=225  Identities=16%  Similarity=0.240  Sum_probs=148.8

Q ss_pred             HHHHHHHHHHHcCChhhhcCChhhHHhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCC
Q psy17691         41 AYCNLANALKEKGQINVLHKPPYKYTRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPD  115 (673)
Q Consensus        41 a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~  115 (673)
                      ..+..|..+...|++++|.. .++.++...|++.   ..+|.++...++.              ..++..+  ++.++|+
T Consensus        21 ~~~~~g~~~~~~g~~~~A~~-~~~~al~~~P~~~~a~~~lg~~~~~~~~~--------------~~A~~~~~~al~~~p~   85 (323)
T d1fcha_          21 QPFEEGLRRLQEGDLPNAVL-LFEAAVQQDPKHMEAWQYLGTTQAENEQE--------------LLAISALRRCLELKPD   85 (323)
T ss_dssp             SHHHHHHHHHHTTCHHHHHH-HHHHHHHSCTTCHHHHHHHHHHHHHTTCH--------------HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCh--------------HHHHHHHHhhhccccc
Confidence            34566777777777777764 4555555555442   3334444444432              2222222  3344555


Q ss_pred             ChhHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17691        116 DGTTFSYII-SVLLLIQVSEAEECYNTALRLCPTHADSL---------------NNLANIKREQGYIEEATRLYLKALEV  179 (673)
Q Consensus       116 ~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p~~~~a~---------------~~Lg~~~~~~g~~~eA~~~~~~al~~  179 (673)
                      +...+..++ .+...|++++|+..+++++..+|......               ......+...+.+.+|+..|++++++
T Consensus        86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  165 (323)
T d1fcha_          86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  165 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            555553332 33345555666666666555555432210               01111223334555566666666666


Q ss_pred             CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        180 FPEF--AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       180 ~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      +|+.  +.++..+|.++..+|++++|+..|+++++.+|+++.+|.++|.+|..+|++++|+.+|+++++++|+++.++++
T Consensus       166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  245 (323)
T d1fcha_         166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN  245 (323)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHH
Confidence            6653  56788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCc---------cccCCCCHHHH
Q psy17691        258 LASIHKDSGKRG---------FFIRTDLNSAY  280 (673)
Q Consensus       258 La~~~~~~g~~~---------l~l~p~~~~a~  280 (673)
                      +|.+|...|+++         ++++|++..++
T Consensus       246 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         246 LGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            999999999987         56677666544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=5.6e-17  Score=160.98  Aligned_cols=141  Identities=16%  Similarity=0.077  Sum_probs=89.1

Q ss_pred             cCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17691        112 LSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL  190 (673)
Q Consensus       112 l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  190 (673)
                      ++|+++.++..+ ..+..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++.+|++......+
T Consensus        66 l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  145 (259)
T d1xnfa_          66 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL  145 (259)
T ss_dssp             HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHH
Confidence            456666666444 3444577777777777777777777777777777777777777777777777777777776666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh------------------------------------CCCCHHHHHHHHHHHHHcCCH
Q psy17691        191 ASVLQQQGKLTDALLHYKEAIRI------------------------------------QPSFADAYSNMGNTLKEMQDI  234 (673)
Q Consensus       191 a~~~~~~g~~~eA~~~~~~al~~------------------------------------~p~~~~~~~~lg~~~~~~g~~  234 (673)
                      +..+...+..+.+..........                                    .|....+++++|.+|..+|++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  225 (259)
T d1xnfa_         146 YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL  225 (259)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCH
Confidence            66555555443333333322222                                    122233566666677777777


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q psy17691        235 QGALQCYSRAIQINPGFA  252 (673)
Q Consensus       235 ~eA~~~~~~Al~l~p~~~  252 (673)
                      ++|+.+|++++..+|++.
T Consensus       226 ~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         226 DSATALFKLAVANNVHNF  243 (259)
T ss_dssp             HHHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHHHHcCCCCH
Confidence            777777777776666543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=5.7e-17  Score=168.12  Aligned_cols=240  Identities=9%  Similarity=-0.017  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCch---hhhh
Q psy17691          2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNR---IRIG   78 (673)
Q Consensus         2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~---~~l~   78 (673)
                      .++|+..++++|+++|++..+|..++.++..+++....         +...+++++|+. .++.+....|.+.   ...+
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~---------~~~~~~~~~al~-~~~~~l~~~pk~~~~~~~~~  114 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSP---------EESAALVKAELG-FLESCLRVNPKSYGTWHHRC  114 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCH---------HHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHH-HHHHHHHhCCCcHHHHHHhh
Confidence            37899999999999999999999999998887753322         222333333332 4566666777664   2344


Q ss_pred             hhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHH-HHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691         79 YVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTF-SYIISVL-LLIQVSEAEECYNTALRLCPTHADSLN  154 (673)
Q Consensus        79 ~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~-~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~  154 (673)
                      .++..++...            ...++..+  .+..+|+....+ ...+..+ ..+++++|+..++++++.+|++..+|+
T Consensus       115 ~~~~~~~~~~------------~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~  182 (334)
T d1dcea1         115 WLLSRLPEPN------------WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (334)
T ss_dssp             HHHHTCSSCC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             HHHHHhcccc------------HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHH
Confidence            4444444311            22333333  556788877776 3444444 478999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHH------------------------------HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        155 NLANIKREQGYIEEA------------------------------TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL  204 (673)
Q Consensus       155 ~Lg~~~~~~g~~~eA------------------------------~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  204 (673)
                      ++|.++..+|++++|                              ...|.+++..+|.+...+.++|.++...|++++|+
T Consensus       183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~  262 (334)
T d1dcea1         183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC  262 (334)
T ss_dssp             HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence            999999988876543                              44455555566666666667788888888888999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK  263 (673)
Q Consensus       205 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~  263 (673)
                      ..+.++++.+|++..++..+|.++..+|++++|+++|+++++++|.+...|.+|+..+.
T Consensus       263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            99998888888888889999999999999999999999999999988888888877654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1e-15  Score=133.57  Aligned_cols=111  Identities=17%  Similarity=0.290  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ  232 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g  232 (673)
                      +...|..++..|++++|+.+|+++++.+|+++.+|.++|.++..+|++++|+..|+++++++|+++.+|+++|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        233 DIQGALQCYSRAIQINPGFADAHSNLASIHK  263 (673)
Q Consensus       233 ~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~  263 (673)
                      ++++|+.+|+++++++|+++.++.+++.+..
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999988887753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.3e-15  Score=139.84  Aligned_cols=144  Identities=12%  Similarity=0.024  Sum_probs=126.3

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17691        118 TTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ  197 (673)
Q Consensus       118 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  197 (673)
                      ..|..+..+...|++++|++.|+++   .+.++.+++++|.+|..+|++++|+++|+++++++|+++.+|+++|.++.++
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence            3456677788899999999999864   6678899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        198 GKLTDALLHYKEAIRIQPSF----------------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       198 g~~~eA~~~~~~al~~~p~~----------------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      |++++|++.|++++...+.+                .++++++|.++.++|++++|++.|++|+++.|+........+.-
T Consensus        84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~  163 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME  163 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence            99999999999999876543                47889999999999999999999999999998865555555444


Q ss_pred             HHH
Q psy17691        262 HKD  264 (673)
Q Consensus       262 ~~~  264 (673)
                      ...
T Consensus       164 ~~~  166 (192)
T d1hh8a_         164 CVW  166 (192)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=9.3e-15  Score=144.59  Aligned_cols=138  Identities=17%  Similarity=0.094  Sum_probs=120.3

Q ss_pred             CHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691        131 QVSEAEECYNTALRLCP----THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH  206 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p----~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~  206 (673)
                      +.+.|+..+++++...+    ..+.+++.+|.+|..+|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            56778888888887533    34668999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691        207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR  268 (673)
Q Consensus       207 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~  268 (673)
                      |+++++++|+++.++.++|.++..+|++++|+..|+++++.+|++......++.++...+..
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  155 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK  155 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHH
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhH
Confidence            99999999999999999999999999999999999999999999888888887777666543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.7e-15  Score=127.83  Aligned_cols=109  Identities=17%  Similarity=0.236  Sum_probs=104.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      ..+..++..|++++|+.+|+++++.+|+++.+|.++|.+|..+|++++|+..|+++++++|+++.+|+++|.++..+|++
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691        201 TDALLHYKEAIRIQPSFADAYSNMGNTLK  229 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~  229 (673)
                      ++|+..|+++++++|+++.++..++.+..
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999988753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.6e-15  Score=134.69  Aligned_cols=107  Identities=20%  Similarity=0.204  Sum_probs=58.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        155 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI  234 (673)
Q Consensus       155 ~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  234 (673)
                      ..|+.+++.|+|++|+.+|+++++++|++..+|+++|.++...|++++|+..|+++++++|++..+|.++|.++..+|++
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        235 QGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       235 ~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      ++|+.+|+++++++|++..++..++.+
T Consensus        95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          95 RAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            555555555555555555555554444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.8e-14  Score=130.31  Aligned_cols=120  Identities=18%  Similarity=0.134  Sum_probs=109.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL  200 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  200 (673)
                      ..+..++..|+|++|+.+|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|++..+|.++|.++..+|++
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHH
Q psy17691        201 TDALLHYKEAIRIQPSFADAYSNMGNTLKE--MQDIQGALQC  240 (673)
Q Consensus       201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~eA~~~  240 (673)
                      ++|+..|+++++++|++..++..++.+...  .+.+++|+..
T Consensus        95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999888877543  3445555543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.8e-16  Score=169.79  Aligned_cols=226  Identities=12%  Similarity=0.055  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhh--h-hh
Q psy17691          3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIR--I-GY   79 (673)
Q Consensus         3 ~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~--l-~~   79 (673)
                      =+|+++|++|++++|++++++.++|.++..+|+..+  + +..                    ++.++|+....  . ..
T Consensus         3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~e--a-ye~--------------------~i~~dp~~a~~~~~e~~   59 (497)
T d1ya0a1           3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQD--L-YQK--------------------MLVTDLEYALDKKVEQD   59 (497)
T ss_dssp             HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHH--H-HHH--------------------HHHHCHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHH--H-HHH--------------------HHHcChhhHHHHhHHHH
Confidence            379999999999999999999999999999985322  2 111                    11112111000  0 00


Q ss_pred             hhhhcCCCcccccccccCCCCchhHHHHHHHhc----CCCChhHH-HHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691         80 VSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYAL----SPDDGTTF-SYIIS-VLLLIQVSEAEECYNTALRLCPTHADSL  153 (673)
Q Consensus        80 ~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l----~p~~~~~~-~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~  153 (673)
                      ++.                ..+...++.+....    .++..... ..... ....+.|+.|+..++++++++|++...+
T Consensus        60 Lw~----------------~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~  123 (497)
T d1ya0a1          60 LWN----------------HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKS  123 (497)
T ss_dssp             HHH----------------HHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred             HHH----------------HHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence            000                00111222221111    12222222 11222 2347789999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691        154 NNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD  233 (673)
Q Consensus       154 ~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  233 (673)
                      .++|.++...|++++|+..++++++.++  ..++.++|.++..+|++++|+.+|++|++++|+++.+|++||.++...|+
T Consensus       124 ~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~  201 (497)
T d1ya0a1         124 SQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD  201 (497)
T ss_dssp             -------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC
T ss_pred             HHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC
Confidence            9999999999999999999999998876  46899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691        234 IQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       234 ~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~  269 (673)
                      +.+|+.+|.+|+..+|.++.++.||+.++.+..+..
T Consensus       202 ~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~  237 (497)
T d1ya0a1         202 HLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESR  237 (497)
T ss_dssp             HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999998776554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.1e-14  Score=138.47  Aligned_cols=103  Identities=20%  Similarity=0.144  Sum_probs=80.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL  228 (673)
Q Consensus       149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  228 (673)
                      +++.+...|..++..|+|++|+..|+++++++|.++.+|+++|.+|...|++++|+..|+++++++|++..+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34556677888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        229 KEMQDIQGALQCYSRAIQINPGF  251 (673)
Q Consensus       229 ~~~g~~~eA~~~~~~Al~l~p~~  251 (673)
                      ..+|++++|+.+|++|++++|++
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHhCccc
Confidence            88888888888888888776644

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=2.5e-14  Score=135.87  Aligned_cols=116  Identities=16%  Similarity=0.055  Sum_probs=101.9

Q ss_pred             CChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17691        115 DDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL  194 (673)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  194 (673)
                      +.......+..++..|+|++|+..|+++++++|+++.+|.++|.+|...|++++|+.+|+++++++|++..+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            33444566778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE  230 (673)
Q Consensus       195 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  230 (673)
                      ..+|++++|+..|+++++++|++...+...+..+..
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~  118 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  118 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            999999999999999999988655444444444333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.9e-13  Score=124.96  Aligned_cols=79  Identities=19%  Similarity=0.265  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      ++.++|.+|.++|++++|+..++++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..+...++.+...
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4455555555555555555555555555555555555555555555555555555555555555555555555555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5e-13  Score=126.83  Aligned_cols=114  Identities=15%  Similarity=0.099  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ  232 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g  232 (673)
                      +++.|..+...|+|++|++.|++   +.+.++.+|+++|.++..+|++++|++.|+++++++|+++.+|+++|.++.++|
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence            34679999999999999999986   467788999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCCc
Q psy17691        233 DIQGALQCYSRAIQINPGF----------------ADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       233 ~~~eA~~~~~~Al~l~p~~----------------~~a~~~La~~~~~~g~~~  269 (673)
                      ++++|+..|++|+...+.+                .++++++|.++...|+++
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~  137 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK  137 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHH
Confidence            9999999999999875543                477899999999999987

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.46  E-value=7.3e-13  Score=120.81  Aligned_cols=81  Identities=16%  Similarity=0.187  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      .++.|+|.+|.++|++++|++.++++++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+...+..+..+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999888887765


Q ss_pred             c
Q psy17691        265 S  265 (673)
Q Consensus       265 ~  265 (673)
                      +
T Consensus       148 l  148 (153)
T d2fbna1         148 L  148 (153)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.46  E-value=2.9e-13  Score=116.62  Aligned_cols=93  Identities=13%  Similarity=0.049  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ  232 (673)
Q Consensus       153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g  232 (673)
                      ++.+|.++.++|++++|+..|+++++.+|+++.+|.++|.++...|++++|+.+|+++++++|++..+|.++|.+|..+|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            45666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHH
Q psy17691        233 DIQGALQCYSRAI  245 (673)
Q Consensus       233 ~~~eA~~~~~~Al  245 (673)
                      ++++|++++++.|
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            7777777777654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.7e-13  Score=119.88  Aligned_cols=110  Identities=11%  Similarity=0.024  Sum_probs=79.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q psy17691        155 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG---KLTDALLHYKEAIRIQPSF--ADAYSNMGNTLK  229 (673)
Q Consensus       155 ~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~  229 (673)
                      ++++.+...+++++|++.|+++++++|.++.+++++|.++...+   ++++|+..|+++++.+|++  ..+++++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            45666677777777777777777777777777777777776543   4456777777777776654  347777777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691        230 EMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD  264 (673)
Q Consensus       230 ~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~  264 (673)
                      ++|++++|+.+|+++++++|++..+...++.+..+
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            77777777777777777777777777777666544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3.5e-13  Score=138.97  Aligned_cols=176  Identities=9%  Similarity=-0.142  Sum_probs=150.9

Q ss_pred             HHhcCCCChhHHHHHHHHH-Hc--CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy17691        109 CYALSPDDGTTFSYIISVL-LL--IQVSEAEECYNTALRLCPTHADSL-NNLANIKREQGYIEEATRLYLKALEVFPEFA  184 (673)
Q Consensus       109 ~~~l~p~~~~~~~~~~~~~-~~--g~~~~A~~~~~~al~~~p~~~~a~-~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~  184 (673)
                      ++..+|++..+|...+..+ ..  +++++|+..++++++.+|++..++ ..+|.++...+++++|+..++++++++|.+.
T Consensus        99 ~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~  178 (334)
T d1dcea1          99 CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  178 (334)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred             HHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH
Confidence            5577999999987665544 44  469999999999999999998886 5678899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHH------------------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy17691        185 AAHSNLASVLQQQGKLTD------------------------------ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI  234 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~e------------------------------A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  234 (673)
                      .+|+++|.++...|++++                              |...|.+++..+|.+...+.++|.++...|++
T Consensus       179 ~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~  258 (334)
T d1dcea1         179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSE  258 (334)
T ss_dssp             HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhH
Confidence            999999999998887653                              44445566666676667777888999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHH
Q psy17691        235 QGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLL  284 (673)
Q Consensus       235 ~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~  284 (673)
                      .+|+..+.++++.+|++..++..+|.++...|+++         ++++|++...|.+++
T Consensus       259 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~  317 (334)
T d1dcea1         259 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  317 (334)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence            99999999999999999999999999999999987         789999888777665

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2e-12  Score=120.01  Aligned_cols=118  Identities=13%  Similarity=0.005  Sum_probs=107.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTH---------------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA  185 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~  185 (673)
                      ..+..++..|++++|+.+|+++++..|..               ..++.++|.+|.++|++++|+..++++++++|++..
T Consensus        18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~   97 (170)
T d1p5qa1          18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK   97 (170)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchh
Confidence            45667888999999999999999997754               346788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL  238 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~  238 (673)
                      +++++|.++..+|++++|+..|+++++++|++..+...++.+....++..+..
T Consensus        98 a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          98 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988877766554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.41  E-value=2.2e-12  Score=119.46  Aligned_cols=77  Identities=17%  Similarity=0.207  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH  262 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~  262 (673)
                      ++.|+|.+|..+|++++|+..++++++++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.+.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.41  E-value=1.2e-12  Score=121.36  Aligned_cols=125  Identities=16%  Similarity=0.132  Sum_probs=89.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17691        123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTD  202 (673)
Q Consensus       123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  202 (673)
                      +..++..|++++|+..|+++++..+.                  ..+.....+...++|....++.++|.++.++|++++
T Consensus        34 ~~~~~~~~~y~~Ai~~y~~al~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~   95 (169)
T d1ihga1          34 GNTFFKSQNWEMAIKKYTKVLRYVEG------------------SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQG   95 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH------------------HHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhh------------------hhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccch
Confidence            33445566666666666666653211                  011111122233456667788888888888888888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        203 ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       203 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      |+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++..+...|+.+....
T Consensus        96 Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1          96 AVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888776544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.41  E-value=4.2e-13  Score=121.29  Aligned_cols=101  Identities=17%  Similarity=0.169  Sum_probs=69.8

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17691        128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQ----------GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ  197 (673)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~----------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  197 (673)
                      +++.|++|+..|+++++++|+++++++++|.++...          +++++|+..|+++++++|++..+|+++|.+|..+
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence            355788999999999999999999999999888754          3446677777777777777777777777766655


Q ss_pred             CC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        198 GK-----------LTDALLHYKEAIRIQPSFADAYSNMGNTL  228 (673)
Q Consensus       198 g~-----------~~eA~~~~~~al~~~p~~~~~~~~lg~~~  228 (673)
                      |+           +++|+++|+++++++|++..++..|+.+.
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            43           45555555555555555555555555554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.6e-13  Score=117.82  Aligned_cols=110  Identities=12%  Similarity=-0.042  Sum_probs=98.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHH
Q psy17691        122 YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG---YIEEATRLYLKALEVFPEF--AAAHSNLASVLQQ  196 (673)
Q Consensus       122 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g---~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~  196 (673)
                      .+..+...+++++|++.|+++++++|+++++++++|.++...+   ++++|+..|+++++.+|.+  ..+++++|.+|..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            3456677889999999999999999999999999999998644   5667999999999998765  4689999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        197 QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM  231 (673)
Q Consensus       197 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~  231 (673)
                      +|++++|+++|+++++++|++..+...++.+..+.
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998877654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.39  E-value=5.3e-13  Score=120.63  Aligned_cols=107  Identities=18%  Similarity=0.158  Sum_probs=96.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691        159 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ----------GKLTDALLHYKEAIRIQPSFADAYSNMGNTL  228 (673)
Q Consensus       159 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  228 (673)
                      .+.+++.|++|+..|+++++++|+++.+++++|.++...          +.+++|+..|+++++++|+++.+|+++|.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            456778899999999999999999999999999999754          5568999999999999999999999999999


Q ss_pred             HHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691        229 KEMQD-----------IQGALQCYSRAIQINPGFADAHSNLASIHKDS  265 (673)
Q Consensus       229 ~~~g~-----------~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~  265 (673)
                      ..+|+           +++|+++|+++++++|++..++.+|+.+....
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence            88764           69999999999999999999999999876443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.2e-12  Score=111.94  Aligned_cols=110  Identities=19%  Similarity=0.225  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHH
Q psy17691        151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA-------DAYSN  223 (673)
Q Consensus       151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~  223 (673)
                      ..+.++|..++..|+|++|+.+|+++++++|++..++.++|.+|..+|++++|+..|+++++++|++.       .++.+
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34667888899999999999999999999999988999999999999999999999999988887664       46777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691        224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI  261 (673)
Q Consensus       224 lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~  261 (673)
                      +|.++..++++++|+.+|++++..+++ .+....+..+
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~  121 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA  121 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence            888888899999999999999988775 5555555443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.37  E-value=2e-12  Score=111.28  Aligned_cols=93  Identities=18%  Similarity=0.138  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691        119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG  198 (673)
Q Consensus       119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  198 (673)
                      .+..+..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|+++++++|++..++.++|.+|..+|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            45666778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy17691        199 KLTDALLHYKEAI  211 (673)
Q Consensus       199 ~~~eA~~~~~~al  211 (673)
                      ++++|++.+++.|
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999976

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.37  E-value=2.9e-12  Score=118.67  Aligned_cols=98  Identities=19%  Similarity=0.150  Sum_probs=89.4

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691        141 TALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA  220 (673)
Q Consensus       141 ~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  220 (673)
                      +....+|....++.++|.++.++|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+
T Consensus        68 ~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~  147 (169)
T d1ihga1          68 DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI  147 (169)
T ss_dssp             HHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence            34455677788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHH
Q psy17691        221 YSNMGNTLKEMQDIQGAL  238 (673)
Q Consensus       221 ~~~lg~~~~~~g~~~eA~  238 (673)
                      ...++.+........++.
T Consensus       148 ~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         148 QAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999988776666553

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.36  E-value=5.3e-12  Score=114.93  Aligned_cols=112  Identities=17%  Similarity=0.063  Sum_probs=102.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTH----------------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA  184 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~  184 (673)
                      ..+..++..|+|.+|+..|++++...+..                ..++.++|.+|.++|++++|+.+++++++++|.+.
T Consensus        22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~  101 (153)
T d2fbna1          22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV  101 (153)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhh
Confidence            45667888999999999999999976543                23678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ  232 (673)
Q Consensus       185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g  232 (673)
                      .+|+++|.++..+|++++|+..|+++++++|++..+...++.+..+++
T Consensus       102 ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         102 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998876654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=3.4e-11  Score=122.30  Aligned_cols=250  Identities=12%  Similarity=0.015  Sum_probs=168.6

Q ss_pred             CHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC-hhhhcCChhhHHhhcCCCch
Q psy17691          1 LIDLAIDTYRRAIELQPNF-----PDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQ-INVLHKPPYKYTRELAPGNR   74 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~-----~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~-~~~A~~~~~~~~~~l~p~~~   74 (673)
                      ++++|+..|+++++..|++     ..++..+|.++..+|+++.+..++..+........ ......            ..
T Consensus        27 ~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~------------~~   94 (366)
T d1hz4a_          27 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW------------SL   94 (366)
T ss_dssp             CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH------------HH
T ss_pred             CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH------------HH
Confidence            5789999999999999987     45888999999999987777766666654433221 110000            01


Q ss_pred             hhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCC-h--hHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q psy17691         75 IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDD-G--TTF-SYIISVLLLIQVSEAEECYNTALRLCPTH-  149 (673)
Q Consensus        75 ~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~-~--~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~-  149 (673)
                      ..++..+...++...+...       ...++........+.. .  ..+ ..+..+...|++++|...+++++...+.. 
T Consensus        95 ~~~~~~~~~~~~~~~a~~~-------~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~  167 (366)
T d1hz4a_          95 IQQSEILFAQGFLQTAWET-------QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  167 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHH-------HHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence            1223333333322111100       0111111111111111 1  222 23345567899999999999998876543 


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q psy17691        150 ----ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF-  217 (673)
Q Consensus       150 ----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-  217 (673)
                          ..++..++..+...+++.++...+.++.......       ..++..++.++...|++++|...++++++..+.+ 
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  247 (366)
T d1hz4a_         168 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN  247 (366)
T ss_dssp             GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred             hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccc
Confidence                5577788888899999999999998888764332       4567778888899999999999999988876654 


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCCc
Q psy17691        218 ---ADAYSNMGNTLKEMQDIQGALQCYSRAIQI------NPGFADAHSNLASIHKDSGKRG  269 (673)
Q Consensus       218 ---~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l------~p~~~~a~~~La~~~~~~g~~~  269 (673)
                         ...+.++|.++...|++++|+.++++++..      .|....++..+|.+|...|+++
T Consensus       248 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  308 (366)
T d1hz4a_         248 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS  308 (366)
T ss_dssp             GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence               456778899999999999999999998854      3455678888999999998875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.36  E-value=9.2e-12  Score=115.17  Aligned_cols=126  Identities=11%  Similarity=-0.003  Sum_probs=109.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTH---------------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA  185 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~  185 (673)
                      ..+..++..|+|++|+..|++++...+..               ..++.++|.+|..+|++++|+..++++++++|++..
T Consensus        20 e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~   99 (168)
T d1kt1a1          20 EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK   99 (168)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHH
Confidence            45677888999999999999999864432               346788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQG-ALQCYSRAIQ  246 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e-A~~~~~~Al~  246 (673)
                      +++++|.++..+|++++|+..|+++++++|++..++..++.+....+++.+ ..+.|.+.++
T Consensus       100 a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         100 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999888776654 4445444443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=2.1e-11  Score=124.14  Aligned_cols=157  Identities=8%  Similarity=0.004  Sum_probs=128.9

Q ss_pred             CCCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17691        113 SPDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTH-ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL  190 (673)
Q Consensus       113 ~p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  190 (673)
                      .|.....|.. +......|++++|...|+++++..|.+ ..+|..++....+.|++++|.+.|+++++..|.+...+...
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~  174 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            4666666643 444456889999999999999988876 45788999999999999999999999999999998888888


Q ss_pred             HHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Q psy17691        191 ASVLQQ-QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF----ADAHSNLASIHKDS  265 (673)
Q Consensus       191 a~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~----~~a~~~La~~~~~~  265 (673)
                      +..... .|+.+.|...|+++++..|+++..|..++..+...|++++|...|++|++..|.+    ...|..........
T Consensus       175 a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~  254 (308)
T d2onda1         175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI  254 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Confidence            877544 5889999999999999999999999999999999999999999999999977644    34677777766667


Q ss_pred             CCCc
Q psy17691        266 GKRG  269 (673)
Q Consensus       266 g~~~  269 (673)
                      |+.+
T Consensus       255 G~~~  258 (308)
T d2onda1         255 GDLA  258 (308)
T ss_dssp             SCHH
T ss_pred             CCHH
Confidence            7654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=1.1e-11  Score=125.23  Aligned_cols=161  Identities=12%  Similarity=0.053  Sum_probs=128.2

Q ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HH
Q psy17691        119 TFSYIISVL-LLIQVSEAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AA  185 (673)
Q Consensus       119 ~~~~~~~~~-~~g~~~~A~~~~~~al~~~------p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~  185 (673)
                      .|..++.++ ..+++++|+.+|++++++.      +....++.++|.+|.++|++++|+++|++++++.+..      ..
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            454555544 5899999999999999983      2235689999999999999999999999999986655      67


Q ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------
Q psy17691        186 AHSNLASVLQQ-QGKLTDALLHYKEAIRIQPS------FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA------  252 (673)
Q Consensus       186 ~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~------  252 (673)
                      ++.++|.++.. .|++++|+++|++++++.+.      ...++.++|.++..+|++++|+.+|++++...+...      
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  198 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence            78899999866 59999999999999987432      245789999999999999999999999999987663      


Q ss_pred             -HHHHHHHHHHHHcCCCc---------cccCCCCHHH
Q psy17691        253 -DAHSNLASIHKDSGKRG---------FFIRTDLNSA  279 (673)
Q Consensus       253 -~a~~~La~~~~~~g~~~---------l~l~p~~~~a  279 (673)
                       ..+.+.+.++...|++.         ++++|.++..
T Consensus       199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s  235 (290)
T d1qqea_         199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence             45677888888888876         5667766543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=1.7e-11  Score=123.81  Aligned_cols=137  Identities=17%  Similarity=0.124  Sum_probs=111.0

Q ss_pred             hHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC------
Q psy17691        118 TTFSYII-SVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKRE-QGYIEEATRLYLKALEVFPEF------  183 (673)
Q Consensus       118 ~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~-~g~~~eA~~~~~~al~~~p~~------  183 (673)
                      ..+..++ ++...|++++|+.+|++++++.+..      ..++..+|.+|.. .|++++|+.+|++++++.+..      
T Consensus        78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~  157 (290)
T d1qqea_          78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS  157 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence            3454444 4556999999999999999986554      5688899999866 599999999999999874432      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691        184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA-------DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA  254 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a  254 (673)
                      ..++.++|.++..+|+|++|+..|++++...+.+.       ..+.+.|.++...|+++.|...++++++++|.....
T Consensus       158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s  235 (290)
T d1qqea_         158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence            56789999999999999999999999999987763       467889999999999999999999999999876543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.8e-11  Score=104.38  Aligned_cols=104  Identities=21%  Similarity=0.215  Sum_probs=92.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHH
Q psy17691        121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA-------AAHSNLASV  193 (673)
Q Consensus       121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~la~~  193 (673)
                      ..+..++..|+|++|+.+|+++++++|++..++.++|.+|..+|++++|+..++++++++|++.       .++..+|.+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            4556778899999999999999999999999999999999999999999999999999988774       467788889


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  225 (673)
                      +...+++++|+.+|++++..+++ ++....+.
T Consensus        89 ~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  119 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQ  119 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence            99999999999999999999875 55554443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3.3e-10  Score=114.79  Aligned_cols=226  Identities=8%  Similarity=-0.063  Sum_probs=153.9

Q ss_pred             CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCch
Q psy17691          1 LIDLAIDTYRRAIELQPNF------PDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNR   74 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~------~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~   74 (673)
                      ++++|+..|++++++.+..      ..++..++.++...|+...+...+..+.............    ...     ...
T Consensus        66 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~----~~~-----~~~  136 (366)
T d1hz4a_          66 ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP----MHE-----FLV  136 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST----HHH-----HHH
T ss_pred             CHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhh----HHH-----HHH
Confidence            4789999999999875443      4577888888888887555555554444333221100000    000     001


Q ss_pred             hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCC-----ChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691         75 IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPD-----DGTTF-SYIISVLLLIQVSEAEECYNTALRLC  146 (673)
Q Consensus        75 ~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~-----~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~  146 (673)
                      ..++.++...+....+              ...+  .....+.     ....+ ..+..+...+++.++...+.++....
T Consensus       137 ~~la~~~~~~~~~~~a--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~  202 (366)
T d1hz4a_         137 RIRAQLLWAWARLDEA--------------EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL  202 (366)
T ss_dssp             HHHHHHHHHTTCHHHH--------------HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchhhh--------------HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            1233334433332211              1111  1111111     11222 33445567899999999999998875


Q ss_pred             CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q psy17691        147 PT-------HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----AAAHSNLASVLQQQGKLTDALLHYKEAIRI--  213 (673)
Q Consensus       147 p~-------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~--  213 (673)
                      ..       ...++..++.++...|++++|...++++++..+.+    ...+.++|.++...|++++|+..+++++..  
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  282 (366)
T d1hz4a_         203 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR  282 (366)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            43       24567888999999999999999999999987765    567888999999999999999999999865  


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691        214 ----QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       214 ----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p  249 (673)
                          .|....++..+|.+|..+|++++|+++|++|+++.+
T Consensus       283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         283 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                344567899999999999999999999999998743

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.7e-12  Score=139.03  Aligned_cols=153  Identities=12%  Similarity=0.100  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691        132 VSEAEECYNTALRLC--PTHAD-SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK  208 (673)
Q Consensus       132 ~~~A~~~~~~al~~~--p~~~~-a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  208 (673)
                      +..+++.+++..+..  ++... ....++.++...+.|+.|+..++++++++|++...+.++|.++...|++++|+..++
T Consensus        65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  144 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS  144 (497)
T ss_dssp             THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CC
T ss_pred             HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence            456677777766543  22222 233345666778889999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHH
Q psy17691        209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSA  279 (673)
Q Consensus       209 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a  279 (673)
                      ++++.++.  .++.++|.++..+|++++|+.+|++|++++|++..+|++||.++...|+..         +.++|.++.+
T Consensus       145 ~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a  222 (497)
T d1ya0a1         145 SSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA  222 (497)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred             HHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH
Confidence            99988764  689999999999999999999999999999999999999999999999987         7899999999


Q ss_pred             HHHHHHH
Q psy17691        280 YFWLLLL  286 (673)
Q Consensus       280 ~~~l~~~  286 (673)
                      +.||+.+
T Consensus       223 ~~nL~~~  229 (497)
T d1ya0a1         223 STNLQKA  229 (497)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999844

>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Lipopolysaccharide core biosynthesis protein RfaG
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=2.8e-11  Score=124.91  Aligned_cols=159  Identities=15%  Similarity=0.148  Sum_probs=122.2

Q ss_pred             cccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhh
Q psy17691        463 ITSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLK  540 (673)
Q Consensus       463 ~~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (673)
                      ...|..+|++.+..++++++++.  |-.+.+++++.++.++.|+..+++++                             
T Consensus       183 ~~~r~~~~~~~~~~~i~~~gr~~~~Kg~~~li~a~~~l~~~~~~~~~~ii~-----------------------------  233 (370)
T d2iw1a1         183 EIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVV-----------------------------  233 (370)
T ss_dssp             HHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEE-----------------------------
T ss_pred             hhhhhccCCCccceEEEEEeccccccchhhhcccccccccccccceeeecc-----------------------------
Confidence            35678899999988888888665  88899999999999999999888766                             


Q ss_pred             ccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceee
Q psy17691        541 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVT  619 (673)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt  619 (673)
                                  .+...+.+++..++.|. .+++.|.|..  ++....|+.+||++-| ..++.|++.+|||++|+|||+
T Consensus       234 ------------g~~~~~~~~~~~~~~~~-~~~v~~~g~~--~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PvI~  298 (370)
T d2iw1a1         234 ------------GQDKPRKFEALAEKLGV-RSNVHFFSGR--NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLT  298 (370)
T ss_dssp             ------------SSSCCHHHHHHHHHHTC-GGGEEEESCC--SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEE
T ss_pred             ------------ccccccccccccccccc-cccccccccc--cccccccccccccccccccccccceeeecccCCeeEEE
Confidence                        12223467788888998 4899999865  3566677889999775 466889999999999999998


Q ss_pred             cCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        620 LPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       620 ~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      -.-..+..     ++..-+..-++.  .|.++..+...+|.+|++.++++.+.
T Consensus       299 s~~~g~~e-----~i~~~~~G~l~~~~~d~~~la~~i~~ll~d~~~~~~~~~~  346 (370)
T d2iw1a1         299 TAVCGYAH-----YIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAEN  346 (370)
T ss_dssp             ETTSTTTH-----HHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             eCCCChHH-----HhcCCCceEEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            65444332     333322223554  48999999999999999999888654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.6e-09  Score=109.76  Aligned_cols=215  Identities=11%  Similarity=0.026  Sum_probs=165.8

Q ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          2 IDLAIDTYRRAIEL-QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         2 ~~eAi~~~~kAL~l-~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      +++|...|++|++. .|.+...|..++.++..+|+.+.+...+..+                                  
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~----------------------------------  125 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL----------------------------------  125 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------------------------
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH----------------------------------
Confidence            46788999999974 7888888888888887777543333322221                                  


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCC-hhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDD-GTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLAN  158 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~-~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~  158 (673)
                                                   +...|.+ ...| .++......|++++|..+|+++++..|.+...+...|.
T Consensus       126 -----------------------------l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~  176 (308)
T d2onda1         126 -----------------------------LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL  176 (308)
T ss_dssp             -----------------------------HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred             -----------------------------HHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence                                         1123333 2344 33444556889999999999999999999999999998


Q ss_pred             HHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC
Q psy17691        159 IKRE-QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF----ADAYSNMGNTLKEMQD  233 (673)
Q Consensus       159 ~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~  233 (673)
                      .... .|+.+.|...|+++++.+|++...|..++..+...|++++|...|+++++..|.+    ...|..........|+
T Consensus       177 ~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~  256 (308)
T d2onda1         177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD  256 (308)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred             HHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC
Confidence            7554 6899999999999999999999999999999999999999999999999987754    4578888888889999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-cccCCCCHHHHHHH
Q psy17691        234 IQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG-FFIRTDLNSAYFWL  283 (673)
Q Consensus       234 ~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~-l~l~p~~~~a~~~l  283 (673)
                      .+.+...++++.++.|.......    ......++. +.+.|.+..-...+
T Consensus       257 ~~~~~~~~~r~~~~~~~~~~~~~----~~~~~~ry~~~d~~~~~~~~l~~~  303 (308)
T d2onda1         257 LASILKVEKRRFTAFREEYEGKE----TALLVDRYKFMDLYPCSASELKAL  303 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTSSCH----HHHHHTTTCBTTBCSSCHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCccccccch----HHHHHHHHHhcccCcCCHHHHHHh
Confidence            99999999999999887644321    122235555 67778777654443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.4e-10  Score=96.28  Aligned_cols=79  Identities=15%  Similarity=0.183  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691        186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPS-------FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL  258 (673)
Q Consensus       186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~L  258 (673)
                      -.+.+|.+++++|+|++|+..|++|+++.|.       ...++.++|.++.++|++++|+.+|+++++++|++..++.|+
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            3445555555555555555555555554332       245566666666666666666666666666666666666666


Q ss_pred             HHHHHH
Q psy17691        259 ASIHKD  264 (673)
Q Consensus       259 a~~~~~  264 (673)
                      +.+...
T Consensus        87 ~~~~~~   92 (95)
T d1tjca_          87 KYFEYI   92 (95)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.11  E-value=1.4e-10  Score=105.67  Aligned_cols=100  Identities=18%  Similarity=0.189  Sum_probs=77.7

Q ss_pred             HHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        151 DSLNNL--ANIKREQGYIEEATRLYLKALEVFPEF------------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS  216 (673)
Q Consensus       151 ~a~~~L--g~~~~~~g~~~eA~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  216 (673)
                      .++..+  |..++..|+|++|+..|+++++++|+.            ..+|.++|.+|..+|++++|+..+++++++.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            344444  667777788888888888888876654            357888888888889999998888888876432


Q ss_pred             -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691        217 -----------FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG  250 (673)
Q Consensus       217 -----------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~  250 (673)
                                 ...+++++|.+|..+|++++|+.+|++|+++.|.
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                       2347888999999999999999999999988553

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.1e-10  Score=95.15  Aligned_cols=82  Identities=22%  Similarity=0.196  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS  222 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  222 (673)
                      ++-.+.+|.+++++|+|++|+.+|++|+++.|.+       ..++.++|.++.++|++++|+++|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            5567899999999999999999999999886543       678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q psy17691        223 NMGNTLKEM  231 (673)
Q Consensus       223 ~lg~~~~~~  231 (673)
                      |++.+...+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998766544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.97  E-value=3.4e-10  Score=112.20  Aligned_cols=133  Identities=15%  Similarity=0.078  Sum_probs=116.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL  204 (673)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  204 (673)
                      ..+..|++++|+..|+++++.+|++..++..+|.+|...|++++|+..|+++++++|++...+..++.++...+..+++.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            45568999999999999999999999999999999999999999999999999999999999999999998887777776


Q ss_pred             HHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691        205 LHYKEAIR-IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN  257 (673)
Q Consensus       205 ~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  257 (673)
                      ..+.+... ..|.....+...+.++...|++++|++.++++.+..|+.+..+.+
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~  138 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND  138 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence            65544333 345566778888999999999999999999999999987766543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.95  E-value=1.3e-09  Score=98.91  Aligned_cols=95  Identities=21%  Similarity=0.162  Sum_probs=82.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------
Q psy17691        123 IISVLLLIQVSEAEECYNTALRLCPTH------------ADSLNNLANIKREQGYIEEATRLYLKALEVFPE--------  182 (673)
Q Consensus       123 ~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--------  182 (673)
                      +...+..|+|++|+..|+++++++|+.            ..++.++|.+|..+|++++|+..+++++++.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            455677899999999999999998764            357999999999999999999999999987542        


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691        183 ---FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF  217 (673)
Q Consensus       183 ---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~  217 (673)
                         ...+++++|.+|..+|++++|++.|++++++.|+.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence               24578999999999999999999999999986543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.86  E-value=2e-07  Score=91.41  Aligned_cols=114  Identities=15%  Similarity=0.215  Sum_probs=79.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHH
Q psy17691        130 IQVSEAEECYNTALRLCPTHADSLNNLANIKRE----QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ----QGKLT  201 (673)
Q Consensus       130 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~  201 (673)
                      .....|...+.+...  +.+...+..||.++..    ..+...+..+++++.+  ..+..+++++|.++..    ..+++
T Consensus       124 ~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~  199 (265)
T d1ouva_         124 RDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFK  199 (265)
T ss_dssp             CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred             chhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchh
Confidence            356666666666554  4566777777777775    4566677777777664  4567777888877776    56778


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q psy17691        202 DALLHYKEAIRIQPSFADAYSNMGNTLKE----MQDIQGALQCYSRAIQINP  249 (673)
Q Consensus       202 eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~l~p  249 (673)
                      +|+.+|+++.+.  .++.++++||.+|..    .+++++|+++|++|.+...
T Consensus       200 ~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         200 EALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            888888887776  357777788887775    3467778888888776653

>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: First mannosyl transferase WbaZ
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.84  E-value=5e-09  Score=96.02  Aligned_cols=158  Identities=12%  Similarity=0.081  Sum_probs=107.6

Q ss_pred             cccccCCCCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCc
Q psy17691        465 SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPN  544 (673)
Q Consensus       465 ~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (673)
                      +|.++....+.++|..-=.+.|..+.+++++    +.+|+.+|++++..                               
T Consensus         4 ~~~~~~~~~~~~l~iGrl~~~K~~~~~i~a~----~~l~~~~l~ivg~~-------------------------------   48 (166)
T d2f9fa1           4 SKFKFKCYGDFWLSVNRIYPEKRIELQLEVF----KKLQDEKLYIVGWF-------------------------------   48 (166)
T ss_dssp             TTCCCCCCCSCEEEECCSSGGGTHHHHHHHH----HHCTTSCEEEEBCC-------------------------------
T ss_pred             cccccCCCCCEEEEEecCccccCHHHHHHHH----HHhcCCeEEEEEec-------------------------------
Confidence            4555666666655543334457776666665    45688999988711                               


Q ss_pred             hhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCC
Q psy17691        545 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGE  623 (673)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~  623 (673)
                             ..+...+.+.+.+...+  .++|+|+|.++.++....|+.+|+++-|. ..+.|.+.+|||++|+|||+-...
T Consensus        49 -------~~~~~~~~~~~~~~~~~--~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~~~g~pvi~s~~~  119 (166)
T d2f9fa1          49 -------SKGDHAERYARKIMKIA--PDNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEG  119 (166)
T ss_dssp             -------CTTSTHHHHHHHHHHHS--CTTEEEEESCCHHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSH
T ss_pred             -------ccccchhhhhhhhcccc--cCcEEEeecccccccccccccccccccccccccccccccccccccccceeecCC
Confidence                   01223344555556554  37899999999999999999999998876 457799999999999999997653


Q ss_pred             cchhhhHHHHHHhcCCCcccc-CCHHHHHHHHHHhcCCHHH-HHHHHhhhc
Q psy17691        624 TLASRVAASQLATLGCPELIA-RTHKEYQDIAIRLGTDRDY-CEKALLYHE  672 (673)
Q Consensus       624 ~~~~r~~~~~l~~~gl~~~ia-~~~~~yv~~a~~la~d~~~-~~~~~~~~~  672 (673)
                      .+..     ++. -+-..++. .|.+++++...++.+|++. ++.++++.+
T Consensus       120 ~~~e-----~i~-~~~~g~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~a~  164 (166)
T d2f9fa1         120 GFKE-----TVI-NEKTGYLVNADVNEIIDAMKKVSKNPDKFKKDCFRRAK  164 (166)
T ss_dssp             HHHH-----HCC-BTTTEEEECSCHHHHHHHHHHHHHCTTTTHHHHHHHHH
T ss_pred             ccee-----eec-CCcccccCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence            3221     111 12333444 5899999999999999764 444555443

>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.78  E-value=2.7e-08  Score=93.58  Aligned_cols=157  Identities=6%  Similarity=-0.040  Sum_probs=107.9

Q ss_pred             ccccccCCCCCcEEEecCCc---ccccChhhHHHHHHHHh--cccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhh
Q psy17691        464 TSRQQYGLPEDAIVYCNFNQ---LYKIDPSTLQMWVNVLK--AVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIV  538 (673)
Q Consensus       464 ~~r~~~~l~~~~~~~~~~~~---~~K~~~~~~~~~~~il~--~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (673)
                      ..++++|++.+.+ |..++|   ..|..+.+++++..+..  ..|+.+|+++|.                          
T Consensus        22 ~~~~~~~l~~~~~-il~~Grl~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~--------------------------   74 (196)
T d2bfwa1          22 SLLSKFGMDEGVT-FMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGK--------------------------   74 (196)
T ss_dssp             HHHHHTTCCSCEE-EEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECC--------------------------
T ss_pred             HHHHHhCCCCCCE-EEEEcCCCccccCHHHHHHHHHhhhcccCCCCeEEEEEee--------------------------
Confidence            4678899975543 344444   45888999999999964  468899998871                          


Q ss_pred             hhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCce
Q psy17691        539 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPV  617 (673)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPv  617 (673)
                                    ..+..+...+.+... . .+.+.+.+..+.++....|+.+||++-|. ..+.|++.+|||++|+||
T Consensus        75 --------------g~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~di~v~ps~~e~~~~~~~Eam~~G~pv  138 (196)
T d2bfwa1          75 --------------GDPELEGWARSLEEK-H-GNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIP  138 (196)
T ss_dssp             --------------BCHHHHHHHHHHHHH-C-TTEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEE
T ss_pred             --------------cccchhhhhhhhhhc-c-ceeEEeeeccccccchhccccccccccccccccccccchhhhhcCcee
Confidence                          011112222222222 2 36677889999999999999999998765 556699999999999999


Q ss_pred             eecCCCcchhhhHHHHHHhc-CCCcccc--CCHHHHHHHHHHhc-CCHHHHHHHHhhh
Q psy17691        618 VTLPGETLASRVAASQLATL-GCPELIA--RTHKEYQDIAIRLG-TDRDYCEKALLYH  671 (673)
Q Consensus       618 vt~~g~~~~~r~~~~~l~~~-gl~~~ia--~~~~~yv~~a~~la-~d~~~~~~~~~~~  671 (673)
                      |+-.-..        +-.-+ +-..++.  .+.++.++...++. .|.+.+.+++...
T Consensus       139 I~~~~~~--------~~e~i~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a  188 (196)
T d2bfwa1         139 IASAVGG--------LRDIITNETGILVKAGDPGELANAILKALELSRSDLSKFRENC  188 (196)
T ss_dssp             EEESCHH--------HHHHCCTTTCEEECTTCHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             eecCCCc--------cceeecCCceeeECCCCHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9854321        11111 2123433  47889988887755 4899999888754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.77  E-value=4.2e-08  Score=90.89  Aligned_cols=112  Identities=13%  Similarity=-0.011  Sum_probs=84.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17691        123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTD  202 (673)
Q Consensus       123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  202 (673)
                      +......|++++|+..|.+|+++.+.........       +.     -.......+.+....++.+++.++...|++++
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~-----w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~   85 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQ-----FVEPFATALVEDKVLAHTAKAEAEIACGRASA   85 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------ST-----THHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence            3455567888888888888888876653221111       11     11122233334456788999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        203 ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       203 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  246 (673)
                      |+..++++++.+|.+..+|.+++.+|..+|++++|++.|+++.+
T Consensus        86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999843

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.67  E-value=2.9e-06  Score=82.66  Aligned_cols=174  Identities=18%  Similarity=0.182  Sum_probs=130.4

Q ss_pred             chhHHHHHHHhcCCCChhHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q psy17691        101 NKSRVEIFCYALSPDDGTTFSYIISVLL-----LIQVSEAEECYNTALRLCPTHADSLNNLANIKRE----QGYIEEATR  171 (673)
Q Consensus       101 ~~~a~~~~~~~l~p~~~~~~~~~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~----~g~~~eA~~  171 (673)
                      ...+...+........+.+...++..+.     ..+.++|...++++.+.  ....+...++..+..    ......|..
T Consensus        54 ~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~l~~~~~~~~~~~~~~~~a~~  131 (265)
T d1ouva_          54 LKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVE  131 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             HHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhh--hhhhHHHhhcccccCCCcccchhHHHHH
Confidence            3445555666667777777766655554     45899999999999876  456777888887775    556788888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q psy17691        172 LYLKALEVFPEFAAAHSNLASVLQQ----QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE----MQDIQGALQCYSR  243 (673)
Q Consensus       172 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~  243 (673)
                      .+.+...  +.+...+.+||.++..    ..+...+...++.+.+  ..++.+++++|.+|..    .+++++|+.+|++
T Consensus       132 ~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~  207 (265)
T d1ouva_         132 YFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSK  207 (265)
T ss_dssp             HHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred             Hhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhh
Confidence            8887655  5678899999999987    4567888888888876  4578999999999998    6799999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHH
Q psy17691        244 AIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLL  284 (673)
Q Consensus       244 Al~l~p~~~~a~~~La~~~~~~g~~~l~l~p~~~~a~~~l~  284 (673)
                      +.+.  +++.+.++||.+|. .|.- ...+.....-|+..+
T Consensus       208 aa~~--g~~~a~~~LG~~y~-~G~g-~~~n~~~A~~~~~kA  244 (265)
T d1ouva_         208 ACEL--ENGGGCFNLGAMQY-NGEG-VTRNEKQAIENFKKG  244 (265)
T ss_dssp             HHHT--TCHHHHHHHHHHHH-TTSS-SSCCSTTHHHHHHHH
T ss_pred             hhcc--cCHHHHHHHHHHHH-cCCC-CccCHHHHHHHHHHH
Confidence            9887  57899999999997 4431 223344344444444

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.63  E-value=2.5e-08  Score=98.51  Aligned_cols=126  Identities=10%  Similarity=0.003  Sum_probs=108.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691          1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV   80 (673)
Q Consensus         1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~   80 (673)
                      ++++|+..|+++++.+|+++.++..||.+|...|                                              
T Consensus        11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G----------------------------------------------   44 (264)
T d1zbpa1          11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDG----------------------------------------------   44 (264)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----------------------------------------------
Confidence            5788999999999999999999999999988888                                              


Q ss_pred             hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691         81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIK  160 (673)
Q Consensus        81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~  160 (673)
                                                                        ++++|+..|+++++++|++..++..++.++
T Consensus        45 --------------------------------------------------~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll   74 (264)
T d1zbpa1          45 --------------------------------------------------DFERADEQLMQSIKLFPEYLPGASQLRHLV   74 (264)
T ss_dssp             --------------------------------------------------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             --------------------------------------------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence                                                              799999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691        161 REQGYIEEATRLYLKALE-VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS  222 (673)
Q Consensus       161 ~~~g~~~eA~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  222 (673)
                      ...+..+++...+.+... ..|.....+...+..+...|++++|++.++++.+..|+.+..+.
T Consensus        75 ~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          75 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            887777776665544333 34556677888899999999999999999999999999876654

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.57  E-value=4.1e-08  Score=105.58  Aligned_cols=161  Identities=15%  Similarity=0.078  Sum_probs=102.9

Q ss_pred             ccccCCCCC-cEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691        466 RQQYGLPED-AIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV  542 (673)
Q Consensus       466 r~~~~l~~~-~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (673)
                      +..++++.+ .++|++++|+  .|-.+.+++++.++++.  +.++++++.   |                          
T Consensus       281 ~~~~~~~~~~~~~i~~vgrl~~~KG~~~Ll~a~~~~~~~--~~~l~~~G~---G--------------------------  329 (477)
T d1rzua_         281 AEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSL--GGRLVVLGA---G--------------------------  329 (477)
T ss_dssp             HHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHT--TCEEEEEEC---B--------------------------
T ss_pred             HHhcccccCCccEEEEEeeeeecCCcHHHHHHHHHHHhh--CCeEEEEec---C--------------------------
Confidence            455677644 5567777765  48888899999999876  566766661   0                          


Q ss_pred             CchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeecC
Q psy17691        543 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTLP  621 (673)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~~  621 (673)
                                +......+++..  .+. .+++.|.+..+.++....|..+|+++-| .-++-|++.+|||++|+|||+-.
T Consensus       330 ----------~~~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~~~~~~~aD~~v~PS~~E~fglv~lEAma~G~PvVas~  396 (477)
T d1rzua_         330 ----------DVALEGALLAAA--SRH-HGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVAR  396 (477)
T ss_dssp             ----------CHHHHHHHHHHH--HHT-TTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEES
T ss_pred             ----------CchHHHHHHHHH--hhc-CCeEEEEcccChhHHHHHHHhCccccCCccccCCCHHHHHHHHcCCCEEEcC
Confidence                      122233333333  334 4889999888888887889999999665 46788999999999999999854


Q ss_pred             CCcchhhh---HHHHHHhcCCCc-ccc-CCHHHHHHHH---HHhcCCHHHHHHHHhh
Q psy17691        622 GETLASRV---AASQLATLGCPE-LIA-RTHKEYQDIA---IRLGTDRDYCEKALLY  670 (673)
Q Consensus       622 g~~~~~r~---~~~~l~~~gl~~-~ia-~~~~~yv~~a---~~la~d~~~~~~~~~~  670 (673)
                      -.....=+   ....+..-+-.. ++. .|.++..+..   +++-.|++.+++++..
T Consensus       397 ~GG~~E~v~d~~~~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~~  453 (477)
T d1rzua_         397 TGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKL  453 (477)
T ss_dssp             SHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCCcceeecCCccccccCCCceEEeCCCCHHHHHHHHHHHHhhhCCHHHHHHHHHH
Confidence            43222100   000011111122 222 3677776654   4455799999988754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.54  E-value=3.8e-07  Score=84.23  Aligned_cols=73  Identities=14%  Similarity=0.019  Sum_probs=65.8

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        140 NTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR  212 (673)
Q Consensus       140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  212 (673)
                      .....+.+....++.+++.++...|++++|+.+++++++.+|.+..+|.+++.++...|++++|++.|+++.+
T Consensus        57 ~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          57 PFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3344455566789999999999999999999999999999999999999999999999999999999999844

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.53  E-value=1.9e-07  Score=98.13  Aligned_cols=158  Identities=8%  Similarity=-0.018  Sum_probs=107.0

Q ss_pred             ccccccCCCCCcEE--EecCCcccccChhhHHHHHHHHh--cccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691        464 TSRQQYGLPEDAIV--YCNFNQLYKIDPSTLQMWVNVLK--AVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL  539 (673)
Q Consensus       464 ~~r~~~~l~~~~~~--~~~~~~~~K~~~~~~~~~~~il~--~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (673)
                      ..++.+|+.++.++  +|.+....|..+.+++++..+..  ..|+.+|+++|.                           
T Consensus       239 ~~~~~~~~~~~~~i~~~G~~~~~~Kg~~~ll~a~~~~~~~~~~~~~~lvi~G~---------------------------  291 (437)
T d2bisa1         239 SLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGK---------------------------  291 (437)
T ss_dssp             HHHHHTTCCSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECC---------------------------
T ss_pred             hhhhhhhccCCceEEEeecccccchhHHHHHhhhcccccccccccceeeeecc---------------------------
Confidence            34567787765432  33333446888899999998864  468999999881                           


Q ss_pred             hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCcee
Q psy17691        540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVV  618 (673)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvv  618 (673)
                                   .........+.+.+ .. .+++.|.+..+.++....++.+|+++-| ...+.|+|.+|||++|+|||
T Consensus       292 -------------~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~adi~v~~s~~e~~~~~~~Eama~G~Pvi  356 (437)
T d2bisa1         292 -------------GDPELEGWARSLEE-KH-GNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPI  356 (437)
T ss_dssp             -------------BCHHHHHHHHHHHH-TC-TTEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHTTTCEEE
T ss_pred             -------------cccccccchhhhcc-cc-ccceeccccCcHHHHHHHHhhhccccccccccccchHHHHHHHCCCCEE
Confidence                         11112222233333 33 4778899999999999999999999775 46788999999999999999


Q ss_pred             ecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhc-CCHHHHHHHHhh
Q psy17691        619 TLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLG-TDRDYCEKALLY  670 (673)
Q Consensus       619 t~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la-~d~~~~~~~~~~  670 (673)
                      +-.-....     .++.  +-..++.  .|.++..+...++. .|++.++++++.
T Consensus       357 ~~~~g~~~-----e~i~--~~~G~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~  404 (437)
T d2bisa1         357 ASAVGGLR-----DIIT--NETGILVKAGDPGELANAILKALELSRSDLSKFREN  404 (437)
T ss_dssp             EESCTTHH-----HHCC--TTTCEEECTTCHHHHHHHHHHHHTTTTSCTHHHHHH
T ss_pred             EeCCCCcH-----HhEE--CCcEEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            75432211     1222  1133443  58999999888865 477777776654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.25  E-value=6.7e-06  Score=71.49  Aligned_cols=110  Identities=16%  Similarity=0.165  Sum_probs=94.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q psy17691        131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ----QGKLTDALLH  206 (673)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~  206 (673)
                      ++++|+.+|+++.+..  ++.+.+.|+.  ....+.++|+.+|+++.+.  +++.+.++||.+|..    ..++++|+++
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            7899999999999874  5667777775  3467899999999999875  689999999999987    5679999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q psy17691        207 YKEAIRIQPSFADAYSNMGNTLKE----MQDIQGALQCYSRAIQIN  248 (673)
Q Consensus       207 ~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~l~  248 (673)
                      |+++.+.  .++.+.++||.+|..    ..+.++|+.+|++|.+..
T Consensus        82 ~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          82 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             Hhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            9999886  568899999999988    578999999999998864

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=2e-05  Score=66.68  Aligned_cols=75  Identities=7%  Similarity=-0.091  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691        184 AAAHSNLASVLQQQGK---LTDALLHYKEAIRIQPSF-ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL  258 (673)
Q Consensus       184 ~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~L  258 (673)
                      ..+.+++|.++.+..+   .++|+..++++++.+|.+ .+++++||..|.++|+|++|..+++++|+++|++..+....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            3445555555544322   345555555555555543 24555555555555555555555555555555555554433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=3.4e-05  Score=65.18  Aligned_cols=79  Identities=8%  Similarity=-0.172  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691        150 ADSLNNLANIKREQG---YIEEATRLYLKALEVFPEF-AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG  225 (673)
Q Consensus       150 ~~a~~~Lg~~~~~~g---~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  225 (673)
                      ..+.+++|+++....   +.++|+..++++++.+|.+ .+++++||..|+++|+|++|.++++++|+++|++..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            678888888888654   4568899999999888876 478899999999999999999999999999999888776555


Q ss_pred             HHH
Q psy17691        226 NTL  228 (673)
Q Consensus       226 ~~~  228 (673)
                      .+.
T Consensus       115 ~Ie  117 (124)
T d2pqrb1         115 MVE  117 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Trehalose-6-phosphate synthase, OtsA
domain: Trehalose-6-phosphate synthase, OtsA
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=6.2e-05  Score=79.55  Aligned_cols=147  Identities=14%  Similarity=0.043  Sum_probs=97.3

Q ss_pred             CcEEEecCCccc--ccChhhHHHHHHHHhcccCe----eEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691        474 DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNS----ILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL  547 (673)
Q Consensus       474 ~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (673)
                      +..++.+++|+.  |-.+..+++|.++|++.|+-    .|+.++.+..++                              
T Consensus       253 ~~~~il~V~Rld~~KGi~~~l~A~~~~l~~~p~~~~~v~lv~~~~~~~~~------------------------------  302 (456)
T d1uqta_         253 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGD------------------------------  302 (456)
T ss_dssp             TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTT------------------------------
T ss_pred             CCeEEEEeCCCchhhchHHHHHHHHHHHHhCccccccEEEEEEcCCcccc------------------------------
Confidence            567777888775  99999999999999999974    344444211110                              


Q ss_pred             hhccCChhhh-----------hhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCC
Q psy17691        548 WLLKFPAVGE-----------ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGT  615 (673)
Q Consensus       548 ~~~~~~~~~~-----------~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~Gv  615 (673)
                            ....           ..+...+...|. ...+.+.+..+..+..++|+.+||++-| .-.+-|.|.+|||++|+
T Consensus       303 ------~~~~~~~~~ev~~lv~~in~~~~~~~~-~~~v~~~~~~~~~~l~a~~~~Adv~v~~s~~EG~~lv~~Ea~a~~~  375 (456)
T d1uqta_         303 ------VQAYQDIRHQLENEAGRINGKYGQLGW-TPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQD  375 (456)
T ss_dssp             ------SHHHHHHHHHHHHHHHHHHHHHCBTTB-CSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSC
T ss_pred             ------hHHHHHHHHHHHHHHHHHHhhhccCCC-CceeeccCCcCHHHHhHHHhhhceeecCCccCCCCcHHHHHHHhCC
Confidence                  1111           123334444566 3678889999999999999999999665 57788999999999999


Q ss_pred             c-----eeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcC-CHHHHHH
Q psy17691        616 P-----VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT-DRDYCEK  666 (673)
Q Consensus       616 P-----vvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~-d~~~~~~  666 (673)
                      |     ||.-.-...        -..++ +.++.  .|.++..+...++.+ +++.+++
T Consensus       376 p~~~g~lIlS~~~G~--------~~~l~-~g~lVnP~d~~~~A~ai~~aL~~~~~er~~  425 (456)
T d1uqta_         376 PANPGVLVLSQFAGA--------ANELT-SALIVNPYDRDEVAAALDRALTMSLAERIS  425 (456)
T ss_dssp             TTSCCEEEEETTBGG--------GGTCT-TSEEECTTCHHHHHHHHHHHHTCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCC--------HHHhC-CeEEECcCCHHHHHHHHHHHHcCCHHHHHH
Confidence            9     332111111        11111 12333  389999998888776 4455543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.55  E-value=0.00059  Score=58.58  Aligned_cols=110  Identities=14%  Similarity=0.109  Sum_probs=85.9

Q ss_pred             hhHHHHHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q psy17691        102 KSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKRE----QGYIEEATRLYLKAL  177 (673)
Q Consensus       102 ~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~----~g~~~eA~~~~~~al  177 (673)
                      .+++..+....+..+..+...++. ....+.++|+.+|+++.+.  +++.+.+.||.+|..    ..++++|+++|+++.
T Consensus        10 ~~A~~~~~kaa~~g~~~a~~~l~~-~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa   86 (133)
T d1klxa_          10 KKAIQYYVKACELNEMFGCLSLVS-NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC   86 (133)
T ss_dssp             HHHHHHHHHHHHTTCTTHHHHHHT-CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChhhhhhhcc-ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhh
Confidence            345555555444455555544432 2346899999999999875  789999999999987    578999999999998


Q ss_pred             hhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q psy17691        178 EVFPEFAAAHSNLASVLQQ----QGKLTDALLHYKEAIRIQPS  216 (673)
Q Consensus       178 ~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~  216 (673)
                      +.  .++.+.++||.+|..    ..++++|+++|+++.+....
T Consensus        87 ~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          87 GL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             cc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            75  678999999999987    56899999999999987543

>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-vancosaminyltransferase GftD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=97.26  E-value=0.0011  Score=67.32  Aligned_cols=91  Identities=12%  Similarity=0.079  Sum_probs=66.4

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcccc---CCH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA---RTH  647 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~  647 (673)
                      +++|.+.++.|+.+.+.   .+|+|+.   ++|.+|++||++.|||+|.++-. .-...-+..+...|..-.+-   -|.
T Consensus       285 ~~~v~~~~~~p~~~ll~---~~~~~I~---hgG~~t~~Eal~~GvP~l~~P~~-~DQ~~na~~v~~~G~g~~l~~~~~~~  357 (401)
T d1rrva_         285 RDDCFAIDEVNFQALFR---RVAAVIH---HGSAGTEHVATRAGVPQLVIPRN-TDQPYFAGRVAALGIGVAHDGPTPTF  357 (401)
T ss_dssp             CTTEEEESSCCHHHHGG---GSSEEEE---CCCHHHHHHHHHHTCCEEECCCS-BTHHHHHHHHHHHTSEEECSSSCCCH
T ss_pred             CCCEEEEeccCcHHHhh---hccEEEe---cCCchHHHHHHHhCCCEEEeccc-ccHHHHHHHHHHCCCEEEcCcCCCCH
Confidence            57899999999877765   5999984   89999999999999999998753 22334455677777753332   257


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHh
Q psy17691        648 KEYQDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       648 ~~yv~~a~~la~d~~~~~~~~~  669 (673)
                      ++..+...++. |++.+++.+.
T Consensus       358 ~~L~~ai~~vl-~~~~r~~a~~  378 (401)
T d1rrva_         358 ESLSAALTTVL-APETRARAEA  378 (401)
T ss_dssp             HHHHHHHHHHT-SHHHHHHHHH
T ss_pred             HHHHHHHHHHh-CHHHHHHHHH
Confidence            77777777776 5566665544

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: UDP-glucosyltransferase GtfB
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=96.97  E-value=0.0031  Score=63.53  Aligned_cols=89  Identities=15%  Similarity=0.079  Sum_probs=64.0

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcccc---CCH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA---RTH  647 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~  647 (673)
                      +++|++.++.|+.+.+.   .+|+|+   .++|++|++||++.|||+|.++-. .-....+..+...|..-.+.   -|.
T Consensus       284 ~~nv~~~~~~p~~~~l~---~~~~~V---~hgG~~t~~Eal~~GvP~v~~P~~-~DQ~~na~~l~~~G~g~~l~~~~~~~  356 (401)
T d1iira_         284 GADCFAIGEVNHQVLFG---RVAAVI---HHGGAGTTHVAARAGAPQILLPQM-ADQPYYAGRVAELGVGVAHDGPIPTF  356 (401)
T ss_dssp             GGGEEECSSCCHHHHGG---GSSEEE---ECCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHHTSEEECSSSSCCH
T ss_pred             CCCEEEEeccCHHHHHh---hcCEEE---ecCCchHHHHHHHhCCCEEEcccc-ccHHHHHHHHHHCCCEEEcCcCCCCH
Confidence            57899999998776654   599988   479999999999999999998632 12334455677777654332   268


Q ss_pred             HHHHHHHHHhcCCHHHHHHH
Q psy17691        648 KEYQDIAIRLGTDRDYCEKA  667 (673)
Q Consensus       648 ~~yv~~a~~la~d~~~~~~~  667 (673)
                      ++..+...++.+| +.+++.
T Consensus       357 ~~l~~ai~~~l~~-~~~~~a  375 (401)
T d1iira_         357 DSLSAALATALTP-ETHARA  375 (401)
T ss_dssp             HHHHHHHHHHTSH-HHHHHH
T ss_pred             HHHHHHHHHHhCH-HHHHHH
Confidence            8888888777754 455443

>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDPGT-like
domain: UDP glucose:flavonoid 3-o-glucosyltransferase
species: Grape (Vitis vinifera) [TaxId: 29760]

Probab=96.95  E-value=0.0028  Score=65.46  Aligned_cols=142  Identities=13%  Similarity=0.159  Sum_probs=95.0

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      ...++|.+++......++.++.....++..+...+|.....  ...                      .          .
T Consensus       264 ~~~~v~~s~gs~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~--~~~----------------------~----------l  309 (450)
T d2c1xa1         264 PTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDK--ARV----------------------H----------L  309 (450)
T ss_dssp             TTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGG--GGG----------------------G----------S
T ss_pred             ccceeeecccccccCCHHHHHHHHHHHHhcCCeEEEEECCC--ccc----------------------c----------C
Confidence            44678888888888888888888888877776666643300  000                      0          0


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAAS  632 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~  632 (673)
                      +    +....     .+ ++++.+..+.|+.+.|. +..+|+|+.   ++|..|+.||++.|||+|+++--. =....+.
T Consensus       310 ~----~~~~~-----~~-~~nv~~~~~~pq~~lL~-hp~~~~fIt---HGG~~s~~eal~~GvP~v~~P~~~-DQ~~na~  374 (450)
T d2c1xa1         310 P----EGFLE-----KT-RGYGMVVPWAPQAEVLA-HEAVGAFVT---HCGWNSLWESVAGGVPLICRPFFG-DQRLNGR  374 (450)
T ss_dssp             C----TTHHH-----HH-TTTEEEESCCCHHHHHT-STTEEEEEE---CCCHHHHHHHHHHTCCEEECCCST-THHHHHH
T ss_pred             C----hhhhh-----hc-cccccccccCChHhhhc-cCceeEEEc---cCCccHHHHHHHcCCCEEeccccc-chHHHHH
Confidence            0    00000     11 57899999999888775 566888874   899999999999999999987531 1122233


Q ss_pred             HH-HhcCCCcccc---CCHHHHHHHHHHhcCCHHH
Q psy17691        633 QL-ATLGCPELIA---RTHKEYQDIAIRLGTDRDY  663 (673)
Q Consensus       633 ~l-~~~gl~~~ia---~~~~~yv~~a~~la~d~~~  663 (673)
                      -+ +..|+.--+.   -|.++..+...++.+|+.+
T Consensus       375 rv~~~~G~G~~l~~~~~t~~~l~~ai~~vL~d~~y  409 (450)
T d2c1xa1         375 MVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKG  409 (450)
T ss_dssp             HHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHHH
T ss_pred             HHHHHcCcEEEecCCCcCHHHHHHHHHHHhcCcHH
Confidence            34 4467754332   3789999999999999743

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-epi-vancosaminyltransferase GtfA
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=96.65  E-value=0.0047  Score=62.13  Aligned_cols=90  Identities=11%  Similarity=0.107  Sum_probs=64.7

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--Cc-chhhhHHHHHHhcCCCccc---c
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ET-LASRVAASQLATLGCPELI---A  644 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~-~~~r~~~~~l~~~gl~~~i---a  644 (673)
                      +++|.+.++.|+.+.+   ..+|+|+   ..+|.+|++|||++|+|+|.++-  +. ...+.-+..+...|..-.+   .
T Consensus       269 ~~~v~i~~~~p~~~ll---~~a~~~v---~hgG~~t~~Eal~~G~P~v~~P~~~d~~~eQ~~nA~~l~~~G~g~~l~~~~  342 (391)
T d1pn3a_         269 GADCFVVGEVNLQELF---GRVAAAI---HHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVDGPV  342 (391)
T ss_dssp             CTTCCEESSCCHHHHH---TTSSCEE---EESCHHHHHHHHHHTCCEEEECSSCCBTTBCCHHHHHHHHHTSEEEECCSS
T ss_pred             CCCEEEecccCHHHHH---hhccEEE---ecCchHHHHHHHHhCCcEEEeccccCCcchHHHHHHHHHHCCCEEEcCcCC
Confidence            5788999999877665   4688887   46889999999999999999863  22 2244556667777765433   2


Q ss_pred             CCHHHHHHHHHHhcCCHHHHHHH
Q psy17691        645 RTHKEYQDIAIRLGTDRDYCEKA  667 (673)
Q Consensus       645 ~~~~~yv~~a~~la~d~~~~~~~  667 (673)
                      -|.++..+...++.+| +.+++.
T Consensus       343 ~~~~~l~~~i~~~l~~-~~r~~a  364 (391)
T d1pn3a_         343 PTIDSLSAALDTALAP-EIRARA  364 (391)
T ss_dssp             CCHHHHHHHHHHHTST-THHHHH
T ss_pred             CCHHHHHHHHHHHhCH-HHHHHH
Confidence            3688888888888765 444443

>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDPGT-like
domain: (Iso)flavonoid glycosyltransferase
species: Medicago truncatula [TaxId: 3880]

Probab=96.56  E-value=0.014  Score=59.98  Aligned_cols=144  Identities=14%  Similarity=0.176  Sum_probs=94.3

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      ...++|++++.......+........+++.+...+|..+..  ..                                   
T Consensus       287 ~~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-----------------------------------  329 (473)
T d2pq6a1         287 PGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPD--LV-----------------------------------  329 (473)
T ss_dssp             TTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGG--GS-----------------------------------
T ss_pred             CCceeeeccCccccccHHHHHHHHHHHHhcCCeEEEEEccC--Cc-----------------------------------
Confidence            34577888888888899999999999999998888865511  00                                   


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--CcchhhhH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRVA  630 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~  630 (673)
                       ......+..-+.. .. +++|.+..+.|+.+.|. +..+++|+.   ++|..|+.||++.|||+|.++-  +++  +.+
T Consensus       330 -~~~~~~~~~~~~~-~~-~~Nv~~~~~~Pq~~lL~-hp~~~~fIt---HGG~~s~~Eal~~GVP~lv~P~~~DQ~--~na  400 (473)
T d2pq6a1         330 -IGGSVIFSSEFTN-EI-ADRGLIASWCPQDKVLN-HPSIGGFLT---HCGWNSTTESICAGVPMLCWPFFADQP--TDC  400 (473)
T ss_dssp             -TTTGGGSCHHHHH-HH-TTTEEEESCCCHHHHHT-STTEEEEEE---CCCHHHHHHHHHHTCCEEECCCSTTHH--HHH
T ss_pred             -ccccccCcccchh-hc-cCceEEeeeCCHHHHhc-CCcCcEEEe---cCCccHHHHHHHcCCCEEeccchhhhH--HHH
Confidence             0000000000011 11 57899999999888663 456777774   8999999999999999998863  333  112


Q ss_pred             HHHHHhcCCCccc--cCCHHHHHHHHHHhcCCHH
Q psy17691        631 ASQLATLGCPELI--ARTHKEYQDIAIRLGTDRD  662 (673)
Q Consensus       631 ~~~l~~~gl~~~i--a~~~~~yv~~a~~la~d~~  662 (673)
                      .-+-+.+|+.-.+  .-|.|+..+...++.+|+.
T Consensus       401 ~rv~~~~G~G~~l~~~~t~~~l~~ai~~vl~d~~  434 (473)
T d2pq6a1         401 RFICNEWEIGMEIDTNVKREELAKLINEVIAGDK  434 (473)
T ss_dssp             HHHHHTSCCEEECCSSCCHHHHHHHHHHHHTSHH
T ss_pred             HHHHHHcCeEEeeCCCcCHHHHHHHHHHHHcCCh
Confidence            2222444543211  1378888888888888875

>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDPGT-like
domain: Hydroquinone glucosyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.41  E-value=0.022  Score=58.52  Aligned_cols=163  Identities=14%  Similarity=0.139  Sum_probs=96.0

Q ss_pred             CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691        473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF  552 (673)
Q Consensus       473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (673)
                      ...+++.+++......+..+......+...+...++..+......  ..      +.-...........+|.        
T Consensus       262 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~lp~--------  325 (471)
T d2vcha1         262 LGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIA--NS------SYFDSHSQTDPLTFLPP--------  325 (471)
T ss_dssp             TTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSST--TT------TTTCC--CSCGGGGSCT--------
T ss_pred             CccccccccccccCCCHHHHHHHHHHHHhhcCCeEEEeccccccc--cc------cccccccccchhhhCCc--------
Confidence            446778888888877888888888888888777777654111000  00      00000000000111111        


Q ss_pred             ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecC--CCcchhhhH
Q psy17691        553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP--GETLASRVA  630 (673)
Q Consensus       553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~  630 (673)
                            .    +..... ++.|++.+++|+.+.|+ +..+|+|+.   ++|..|+.||++.|||+|.++  ++++..  +
T Consensus       326 ------~----~~~~~~-~~nv~~~~w~Pq~~lL~-hp~~~~fVt---HGG~gS~~EAl~~GvP~v~~P~~~DQ~~n--A  388 (471)
T d2vcha1         326 ------G----FLERTK-KRGFVIPFWAPQAQVLA-HPSTGGFLT---HCGWNSTLESVVSGIPLIAWPLYAEQKMN--A  388 (471)
T ss_dssp             ------T----HHHHTT-TTEEEEESCCCHHHHHH-STTEEEEEE---CCCHHHHHHHHHHTCCEEECCCSTTHHHH--H
T ss_pred             ------h----hhhhcc-CCCeeecccCCHHHHhc-CccCCEEEe---cCCccHHHHHHHcCCCEEEcccccccHHH--H
Confidence                  1    111122 57899999999998776 456788874   899999999999999999875  444321  2


Q ss_pred             HHHHHhcCCCccc--c----CCHHHHHHHHHHhcCCHH---HHHHHH
Q psy17691        631 ASQLATLGCPELI--A----RTHKEYQDIAIRLGTDRD---YCEKAL  668 (673)
Q Consensus       631 ~~~l~~~gl~~~i--a----~~~~~yv~~a~~la~d~~---~~~~~~  668 (673)
                      .-+-+.+|+.-.+  .    -|.|+-.+...++.+|++   .|++.+
T Consensus       389 ~rv~e~lG~Gv~l~~~~~~~~t~~~l~~ai~~vl~~~~~~~~r~ra~  435 (471)
T d2vcha1         389 VLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMK  435 (471)
T ss_dssp             HHHHHTTCCEECCCCCTTSCCCHHHHHHHHHHHHTSTHHHHHHHHHH
T ss_pred             HHHHHHheeEEEEecCCCCcCCHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            2223444443211  1    277887777777777754   554443

>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDPGT-like
domain: Triterpene UDP-glucosyl transferase UGT71G1
species: Medicago truncatula [TaxId: 3880]

Probab=95.92  E-value=0.042  Score=56.07  Aligned_cols=91  Identities=16%  Similarity=0.165  Sum_probs=60.4

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--CcchhhhHHHHHHhcCCCccc-----
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRVAASQLATLGCPELI-----  643 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~~~gl~~~i-----  643 (673)
                      ++++.+..+.++.+.+ .+..+|+|+.   ++|..|+.||++.|||+|+++-  +++  ..+.-+.+.+|+.-.+     
T Consensus       329 ~~n~~v~~~~pq~~~l-~~p~~~~fIt---HGG~gs~~eAl~~GVP~l~~P~~~DQ~--~nA~rlve~~G~G~~l~~~~~  402 (461)
T d2acva1         329 EGKGMICGWAPQVEVL-AHKAIGGFVS---HCGWNSILESMWFGVPILTWPIYAEQQ--LNAFRLVKEWGVGLGLRVDYR  402 (461)
T ss_dssp             HCSEEEESSCCHHHHH-HSTTEEEEEE---CCCHHHHHHHHHTTCCEEECCCSTTHH--HHHHHHHHTSCCEEESCSSCC
T ss_pred             CCCeEEEecCCHHHHH-hcccCCEEEe---cCCccHHHHHHHcCCCEEeCCcccchH--HHHHHHHHHhCceEEeecccc
Confidence            4667777777655444 5788999875   8999999999999999999863  322  1122223544543222     


Q ss_pred             ----cCCHHHHHHHHHHhcC-CHHHHHHH
Q psy17691        644 ----ARTHKEYQDIAIRLGT-DRDYCEKA  667 (673)
Q Consensus       644 ----a~~~~~yv~~a~~la~-d~~~~~~~  667 (673)
                          .-|.++-.+...++.+ |..+|++.
T Consensus       403 ~~~~~~t~~~l~~a~~~vl~~d~~~r~~a  431 (461)
T d2acva1         403 KGSDVVAAEEIEKGLKDLMDKDSIVHKKV  431 (461)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCTTCTHHHHH
T ss_pred             ccCCccCHHHHHHHHHHHhhCCHHHHHHH
Confidence                1377888888888775 45455443

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.03  Score=55.12  Aligned_cols=92  Identities=14%  Similarity=0.088  Sum_probs=59.1

Q ss_pred             CeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc--chhhhHHHHHHhcCCCccccC---C
Q psy17691        572 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET--LASRVAASQLATLGCPELIAR---T  646 (673)
Q Consensus       572 ~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~--~~~r~~~~~l~~~gl~~~ia~---~  646 (673)
                      ..+...+..+  +....+..+|+++.   .+|++|+.|++.+|+|+|..+=..  .....-|..+...|+.-.+-.   +
T Consensus       231 ~~~~v~~f~~--~~~~lm~~adl~It---~~G~~T~~Eal~~g~P~I~iP~~~~~~~Q~~NA~~l~~~G~~~~~~~~~~~  305 (351)
T d1f0ka_         231 PQHKVTEFID--DMAAAYAWADVVVC---RSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLS  305 (351)
T ss_dssp             TTSEEESCCS--CHHHHHHHCSEEEE---CCCHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTSEEECCGGGCC
T ss_pred             ccceeeeehh--hHHHHHHhCchhhc---cccchHHHHHHHhCCceeeeecccCCchHHHHHHHHHHCCCEEEechhhCC
Confidence            4555556543  34455678999975   478899999999999999876221  234455788999998654422   2


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691        647 HKEYQDIAIRLGTDRDYCEKALLY  670 (673)
Q Consensus       647 ~~~yv~~a~~la~d~~~~~~~~~~  670 (673)
                      .+.. ..++... |++.+.+++..
T Consensus       306 ~e~l-~~~l~~l-~~~~~~~~~~~  327 (351)
T d1f0ka_         306 VDAV-ANTLAGW-SRETLLTMAER  327 (351)
T ss_dssp             HHHH-HHHHHTC-CHHHHHHHHHH
T ss_pred             HHHH-HHHHHhh-CHHHHHHHHHH
Confidence            3333 3334322 67777776654

>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDP-N-acetylglucosamine 2-epimerase
domain: UDP-N-acetylglucosamine 2-epimerase
species: Thermus thermophilus [TaxId: 274]

Probab=94.75  E-value=0.12  Score=51.70  Aligned_cols=149  Identities=14%  Similarity=0.060  Sum_probs=97.4

Q ss_pred             cCCCCCcEEEecCCccccc--ChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchh
Q psy17691        469 YGLPEDAIVYCNFNQLYKI--DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSI  546 (673)
Q Consensus       469 ~~l~~~~~~~~~~~~~~K~--~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (673)
                      ...+.+.+...++.+....  ......+...+....++..+++...+                                 
T Consensus       190 ~~~~~~~~~lvt~hr~~n~~~~~~~~~~~~~~~~~~~~~~~i~p~~~---------------------------------  236 (373)
T d1v4va_         190 EGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHL---------------------------------  236 (373)
T ss_dssp             TTCCSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCS---------------------------------
T ss_pred             cccccccceeEEeccccccchHHHHHHHHHHHhhhcccceeeeeecc---------------------------------
Confidence            4556667778888876533  23345566666666666665543200                                 


Q ss_pred             hhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcch
Q psy17691        547 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLA  626 (673)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~  626 (673)
                            .........+.+   .- ..++.+...+++.+|+.++..|++++    =++|....||.++|+|||++...+  
T Consensus       237 ------~~~~~~~~~~~~---~~-~~n~~~~~~l~~~~~l~ll~~s~~vi----gnSssgi~Ea~~lg~P~Inir~~~--  300 (373)
T d1v4va_         237 ------NPVVREAVFPVL---KG-VRNFVLLDPLEYGSMAALMRASLLLV----TDSGGLQEEGAALGVPVVVLRNVT--  300 (373)
T ss_dssp             ------CHHHHHHHHHHH---TT-CTTEEEECCCCHHHHHHHHHTEEEEE----ESCHHHHHHHHHTTCCEEECSSSC--
T ss_pred             ------cccchhhhhhhh---cc-cccceeeccchHHHHHHHhhhceeEe----cccchhhhcchhhcCcEEEeCCCc--
Confidence                  111122222222   22 36899999999999999999999997    356778889999999999984322  


Q ss_pred             hhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691        627 SRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALL  669 (673)
Q Consensus       627 ~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~  669 (673)
                      +|.-+  + ..|-.-++..+.++-.+..-.+..|+..+..+..
T Consensus       301 eRqeg--~-~~g~nvlv~~d~~~I~~~i~~~l~~~~~~~~~~~  340 (373)
T d1v4va_         301 ERPEG--L-KAGILKLAGTDPEGVYRVVKGLLENPEELSRMRK  340 (373)
T ss_dssp             SCHHH--H-HHTSEEECCSCHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cCHHH--H-hcCeeEEcCCCHHHHHHHHHHHHcCHHHHhhccc
Confidence            33332  2 2355556667788877777778889998887754

>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDP-N-acetylglucosamine 2-epimerase
domain: UDP-N-acetylglucosamine 2-epimerase
species: Bacillus subtilis [TaxId: 1423]

Probab=93.30  E-value=0.14  Score=51.28  Aligned_cols=91  Identities=19%  Similarity=0.168  Sum_probs=61.3

Q ss_pred             CCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHH
Q psy17691        569 LDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHK  648 (673)
Q Consensus       569 ~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~  648 (673)
                      ...++|.+.+.+++.+|+.++..|++++    =++|.-..||-++|+|+|++...+  .|...   ...|-.-++..+.+
T Consensus       253 ~~~~ni~~~~~l~~~~fl~llk~s~~vI----gnSss~i~Ea~~lg~P~Inir~~t--ERqe~---~~~g~nilv~~~~~  323 (377)
T d1o6ca_         253 GDSDRVHLIEPLEVIDFHNFAAKSHFIL----TDSGGVQEEAPSLGKPVLVLRDTT--ERPEG---VEAGTLKLAGTDEE  323 (377)
T ss_dssp             -CCSSEEECCCCCHHHHHHHHHHCSEEE----EC--CHHHHGGGGTCCEEEECSCC--C---C---TTTTSSEEECSCHH
T ss_pred             ccccceEeccccchHHHHHHHhhhheee----cccchhHHhhhhhhceEEEeCCCC--cCcch---hhcCeeEECCCCHH
Confidence            3357899999999999999999999997    345666889999999999994422  12211   12344445555666


Q ss_pred             HHHHHHHHhcCCHHHHHHHH
Q psy17691        649 EYQDIAIRLGTDRDYCEKAL  668 (673)
Q Consensus       649 ~yv~~a~~la~d~~~~~~~~  668 (673)
                      +-.+..-.+.+|+.....+.
T Consensus       324 ~I~~~i~~~l~~~~~~~~~~  343 (377)
T d1o6ca_         324 NIYQLAKQLLTDPDEYKKMS  343 (377)
T ss_dssp             HHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHhChHHHhhhc
Confidence            65555555667777766553

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=89.82  E-value=7.3  Score=38.85  Aligned_cols=117  Identities=9%  Similarity=-0.034  Sum_probs=82.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691        129 LIQVSEAEECYNTALRLCPTHADSLNNLANI----KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL  204 (673)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~----~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  204 (673)
                      ..+.+.|...+.+.....+.....+......    +...+..+.|............+.....-.++ .....+++..+.
T Consensus       227 ~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~  305 (450)
T d1qsaa1         227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLN  305 (450)
T ss_dssp             HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHH
T ss_pred             ccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHH
Confidence            4688899999988877766665544443333    33456778888888777665554444333344 455678999888


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691        205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ  246 (673)
Q Consensus       205 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  246 (673)
                      ..++..-......+...+.+|..+..+|+.++|..+|+++..
T Consensus       306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            887754332233467889999999999999999999999864

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.16  E-value=1.6  Score=42.49  Aligned_cols=136  Identities=13%  Similarity=0.039  Sum_probs=83.5

Q ss_pred             CCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy17691        114 PDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV  193 (673)
Q Consensus       114 p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  193 (673)
                      ++....-..+..+.+.|.|+.|..+|...    .+    +..+..++.+.+++++|.+...++     ++...|..+...
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~----~d----~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~   78 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----SN----FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA   78 (336)
T ss_dssp             C----------------CTTTHHHHHHHT----TC----HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhC----CC----HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHH
Confidence            34444444555666777888888887643    12    234456677788888888887765     567788888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691        194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG  266 (673)
Q Consensus       194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g  266 (673)
                      +.+..+..-|..+ ...   .-.+++-...+-..|...|.+++.+.+++.++...+.+...+..|+.+|.+.+
T Consensus        79 l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          79 CVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence            8877766544221 110   12345555667777888888999999998888888888888888888876543

>d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDP-N-acetylglucosamine 2-epimerase
domain: UDP-N-acetylglucosamine 2-epimerase
species: Escherichia coli [TaxId: 562]

Probab=84.29  E-value=4.9  Score=39.42  Aligned_cols=88  Identities=14%  Similarity=0.121  Sum_probs=64.0

Q ss_pred             CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCC-cchhhhHHHHHHhcCCCccccCCHHH
Q psy17691        571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE-TLASRVAASQLATLGCPELIARTHKE  649 (673)
Q Consensus       571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~-~~~~r~~~~~l~~~gl~~~ia~~~~~  649 (673)
                      ..++.+.+.+++.+|+.++..|++++-    +.|.-..||-++|+|+|++... ...+|+.      .|-.-++..+.++
T Consensus       262 ~~ni~~~~~l~~~~fl~ll~~a~~vig----nSssgi~Ea~~lg~P~Inir~~ter~~~~~------~g~~i~v~~~~~~  331 (376)
T d1f6da_         262 VKNVILIDPQEYLPFVWLMNHAWLILT----DSGGIQEEAPSLGKPVLVMRDTTERPEAVT------AGTVRLVGTDKQR  331 (376)
T ss_dssp             CTTEEEECCCCHHHHHHHHHHCSEEEE----SSSGGGGTGGGGTCCEEECSSCCSCHHHHH------HTSEEECCSSHHH
T ss_pred             cccceeeccccHHHHHHHHhhceEEEe----cCcchHhhHHHhCCCEEEcCCCccCcccee------cCeeEECCCCHHH
Confidence            468999999999999999999999973    4456677999999999998442 2223322      2434456667777


Q ss_pred             HHHHHHHhcCCHHHHHHHH
Q psy17691        650 YQDIAIRLGTDRDYCEKAL  668 (673)
Q Consensus       650 yv~~a~~la~d~~~~~~~~  668 (673)
                      -.+..-+...++..+..+.
T Consensus       332 I~~ai~~~l~~~~~~~~~~  350 (376)
T d1f6da_         332 IVEEVTRLLKDENEYQAMS  350 (376)
T ss_dssp             HHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHhChHhhhhhc
Confidence            7777777777777666543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=80.58  E-value=29  Score=34.11  Aligned_cols=122  Identities=9%  Similarity=-0.073  Sum_probs=75.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------------
Q psy17691        120 FSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA---------------  184 (673)
Q Consensus       120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~---------------  184 (673)
                      ...++..+..+++..+...++..-......+...+-+|..+...|+.++|...|+.+... ++..               
T Consensus       289 ~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~  367 (450)
T d1qsaa1         289 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELK  367 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCC
Confidence            344455566788998888877654333345778899999999999999999999988652 2210               


Q ss_pred             --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691        185 --------------AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA  244 (673)
Q Consensus       185 --------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~A  244 (673)
                                    ..-...+..+...|+..+|...+..++..  .+..-...+|.+..+.|.++.|+....++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence                          01122344455566666666655555432  23445555566666666666666555443