Psyllid ID: psy17723

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
METNQKAEGSGSNFCRQVGITLGFHAGRPSKKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKKKKKKKKK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccEEccccccccccccccccccEEEccccccccccccccccccccccccccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccHHHHHHccccccHHHEEEEcccccccccccccccHHHcHHHHHcccccccEEEEHHcccccccccEEEEccccccccEEEccccccccccEEEEccccccccccccccc
Coil and Loop (DISEMBL)
metnqkaegsgsnfcrqvgitlgfhagrpskkpvpesdkckacdrdtsagemiqcgkcvrylhpacldlpgemlphmklydwqcsdckscvacekaqdddkmlfcdlcdrgyhnycigldkiptvgLVFTLKKKKnkkkkkkkkk
Flexible Loop (DISEMBL)
metnqkaegsgsnfcRQVGITLGfhagrpskkpvpesdkcKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGldkiptvglvftlkkkknkkkkkkkkk
Low Complexity Region (SEG)
METNQKAEGSGSNFCRQVGITLGFHAGRPSKKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLkkkknkkkkkkkkk
Disordered region (IsUnstruct)
*************FCRQVGITLGFH***********************AGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFT***************
Disordered Region (DISOPRED)
*************************************DKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVF****************
Disordered Region (DISEMBL)
***********SNFCRQVGITLGFHAG*******************TSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLK*************
Disordered Region (DISPRO)
**************CRQVGITLGFHAGRPSKKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKK**********
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METNQKAEGSGSNFCRQVGITLGFHAGRPSKKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKKKKKKKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q8WUB8	498	PHD finger protein 10 OS=	yes	N/A	0.593	0.172	0.418	6e-19
Q2T9V9	410	PHD finger protein 10 OS=	yes	N/A	0.593	0.209	0.418	1e-18
Q4V7A6	497	PHD finger protein 10 OS=	no	N/A	0.593	0.173	0.418	1e-18
Q9D8M7	497	PHD finger protein 10 OS=	yes	N/A	0.593	0.173	0.418	1e-18
Q9VWF2	2006	Supporter of activation o	yes	N/A	0.455	0.032	0.464	3e-18
Q6NWE1	490	PHD finger protein 10 OS=	no	N/A	0.682	0.202	0.358	4e-18
Q63ZP1	506	PHD finger protein 10 OS=	N/A	N/A	0.593	0.169	0.395	1e-17
A9LMC0	391	Zinc finger protein DPF3	no	N/A	0.620	0.230	0.4	9e-16
Q92784	378	Zinc finger protein DPF3	no	N/A	0.462	0.177	0.492	2e-15
P58269	378	Zinc finger protein DPF3	no	N/A	0.462	0.177	0.492	2e-15

>sp|Q8WUB8|PHF10_HUMAN PHD finger protein 10 OS=Homo sapiens GN=PHF10 PE=1 SV=3

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 57/86 (66%)

Query: 39  KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
           K K  ++   A  +I C +C    HP+CLD+  E++  +K Y WQC +CK+C+ C +   
Sbjct: 385 KGKESNKKGKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHH 444

Query: 99  DDKMLFCDLCDRGYHNYCIGLDKIPT 124
           +++M+FCD+CDRGYH +C+GL  IP+
Sbjct: 445 EEEMMFCDMCDRGYHTFCVGLGAIPS 470

Involved in transcription activity regulation by chromatin remodeling. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and is required for the proliferation of neural progenitors. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.
Homo sapiens (taxid: 9606)

>sp|Q2T9V9|PHF10_BOVIN PHD finger protein 10 OS=Bos taurus GN=PHF10 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 56/86 (65%)

Query: 39  KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
           K K   R   A  ++ C +C    HP+CLD+  E++  +K Y WQC +CK+C+ C +   
Sbjct: 297 KGKESSRRGKAEPLVHCSQCDNSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHH 356

Query: 99  DDKMLFCDLCDRGYHNYCIGLDKIPT 124
           +++M+FCD+CDRGYH +C+GL  IP+
Sbjct: 357 EEEMMFCDVCDRGYHTFCVGLGAIPS 382

Involved in transcription activity regulation by chromatin remodeling. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and is required for the proliferation of neural progenitors. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Bos taurus (taxid: 9913)

>sp|Q4V7A6|PHF10_RAT PHD finger protein 10 OS=Rattus norvegicus GN=Phf10 PE=2 SV=2

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 57/86 (66%)

Query: 39  KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
           K K  ++   A  +I C +C    HP+CLD+  E++  +K Y WQC +CK+C+ C +   
Sbjct: 384 KGKESNKKGKAESLIHCSQCDNSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHH 443

Query: 99  DDKMLFCDLCDRGYHNYCIGLDKIPT 124
           +++M+FCD+CDRGYH +C+GL  IP+
Sbjct: 444 EEEMMFCDVCDRGYHTFCVGLGAIPS 469

Involved in transcription activity regulation by chromatin remodeling. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and is required for the proliferation of neural progenitors. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Rattus norvegicus (taxid: 10116)

>sp|Q9D8M7|PHF10_MOUSE PHD finger protein 10 OS=Mus musculus GN=Phf10 PE=1 SV=4

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 57/86 (66%)

Query: 39  KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
           K K  ++   A  +I C +C    HP+CLD+  E++  +K Y WQC +CK+C+ C +   
Sbjct: 384 KGKESNKKGKAESLIHCSQCDNSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHH 443

Query: 99  DDKMLFCDLCDRGYHNYCIGLDKIPT 124
           +++M+FCD+CDRGYH +C+GL  IP+
Sbjct: 444 EEEMMFCDVCDRGYHTFCVGLGAIPS 469

Involved in transcription activity regulation by chromatin remodeling. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and is required for the proliferation of neural progenitors. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Mus musculus (taxid: 10090)

>sp|Q9VWF2|SAYP_DROME Supporter of activation of yellow protein OS=Drosophila melanogaster GN=e(y)3 PE=2 SV=3

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 50/71 (70%)

Query: 53   IQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGY 112
            I+C  C + +HP+C+D+P  M+  ++ Y+WQC+ CK C+ C  +Q   KML+C+ CDRGY
Sbjct: 1714 IRCYTCRKRVHPSCVDMPPRMVGRVRNYNWQCAGCKCCIKCRSSQRPGKMLYCEQCDRGY 1773

Query: 113  HNYCIGLDKIP 123
            H YC+GL  +P
Sbjct: 1774 HIYCLGLRTVP 1784

Essential transcription regulator during early development. Coactivates transcription of some euchromatin genes and repress transcription in of euchromatin genes translocated to heterochromatin.

Drosophila melanogaster (taxid: 7227)

>sp|Q6NWE1|PHF10_DANRE PHD finger protein 10 OS=Danio rerio GN=phf10 PE=2 SV=2

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 7/106 (6%)

Query: 25  HAGRPSKKP--VPES-----DKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHM 77
           H   P  KP  +P +      K K  ++      +I C +C    HP+CLD+  +++  +
Sbjct: 356 HKSVPGYKPKVIPNAICGICQKGKEANKRGKPEALIHCSQCQNSGHPSCLDMSVDLVAKI 415

Query: 78  KLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
           K+Y WQC +CK+C  C++   +++M+FCD CDRG+H +C+G+D IP
Sbjct: 416 KMYPWQCMECKTCTVCQQPHHEEEMMFCDKCDRGFHTFCVGMDSIP 461

Involved in transcription activity regulation by chromatin remodeling in the context of the neural progenitors-specific chromatin remodeling complex (npBAF complex). May play a role in the proliferation of neural progenitors.

Danio rerio (taxid: 7955)

>sp|Q63ZP1|PHF10_XENLA PHD finger protein 10 OS=Xenopus laevis GN=phf10 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 56/86 (65%)

Query: 39  KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
           K K  ++   +  +I C +C    HP+CLD+  E++  +K Y WQC +CK+C+ C +   
Sbjct: 393 KGKDANKKGRSERLIHCSQCDNSGHPSCLDMSAELVAVIKKYPWQCMECKTCIICGQPHH 452

Query: 99  DDKMLFCDLCDRGYHNYCIGLDKIPT 124
           +++M+FCD CDRGYH +C+GL  +P+
Sbjct: 453 EEEMMFCDTCDRGYHTFCVGLGALPS 478

Involved in transcription activity regulation by chromatin remodeling in the context of the neural progenitors-specific chromatin remodeling complex (npBAF complex). May play a role in the proliferation of neural progenitors.

Xenopus laevis (taxid: 8355)

>sp|A9LMC0|DPF3_DANRE Zinc finger protein DPF3 OS=Danio rerio GN=dpf3 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 28  RPSKKP---VPESDKCKACDRDT-------SAGEMIQCGKCVRYLHPACLDLPGEMLPHM 77
           +P K P   +  +D C  C  D+        A E++ C  C R  HP+CL     M+  +
Sbjct: 261 KPQKAPDGSIIPNDYCDFCLGDSGSNRKTGQAEELVSCSDCGRSGHPSCLQFTDNMMQAV 320

Query: 78  KLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCI 117
           + Y WQC +CKSC  C  +++DD++LFCD CDRGYH YC+
Sbjct: 321 RTYQWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCL 360

Muscle-specific component of the BAF complex, a multiprotein complex involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Specifically binds acetylated lysines on histone 3 and 4. In the complex, it acts as a tissue-specific anchor between histone acetylations and methylations and chromatin remodeling. Belongs to the neuron-specific chromatin remodeling complex (nBAF complex) and may play a role in neural development (By similarity). Plays an essential role in heart and skeletal muscle development.

Danio rerio (taxid: 7955)

>sp|Q92784|DPF3_HUMAN Zinc finger protein DPF3 OS=Homo sapiens GN=DPF3 PE=1 SV=3

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 44/67 (65%)

Query: 51  EMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDR 110
           E++ C  C R  HP CL     M   +K Y WQC +CKSC+ C  +++DD++LFCD CDR
Sbjct: 280 ELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDR 339

Query: 111 GYHNYCI 117
           GYH YC+
Sbjct: 340 GYHMYCL 346

Belongs to the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Muscle-specific component of the BAF complex, a multiprotein complex involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Specifically binds acetylated lysines on histone 3 and 4 (H3K14ac, H3K9ac, H4K5ac, H4K8ac, H4K12ac, H4K16ac). In the complex, it acts as a tissue-specific anchor between histone acetylations and methylations and chromatin remodeling. It thereby probably plays an essential role in heart and skeletal muscle development.

Homo sapiens (taxid: 9606)

>sp|P58269|DPF3_MOUSE Zinc finger protein DPF3 OS=Mus musculus GN=Dpf3 PE=1 SV=2

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 44/67 (65%)

Query: 51  EMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDR 110
           E++ C  C R  HP CL     M   +K Y WQC +CKSC+ C  +++DD++LFCD CDR
Sbjct: 280 ELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDR 339

Query: 111 GYHNYCI 117
           GYH YC+
Sbjct: 340 GYHMYCL 346

Muscle-specific component of the BAF complex, a multiprotein complex involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Specifically binds acetylated lysines on histone 3 and 4 (H3K14ac, H3K9ac, H4K5ac, H4K8ac, H4K12ac, H4K16ac). In the complex, it acts as a tissue-specific anchor between histone acetylations and methylations and chromatin remodeling. It thereby probably plays an essential role in heart and skeletal muscle development (By similarity). Belongs to the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
340719315	2857	PREDICTED: hypothetical protein LOC10064	0.586	0.029	0.505	4e-24
380029720	3312	PREDICTED: uncharacterized protein LOC10	0.586	0.025	0.505	6e-24
328785896	2891	PREDICTED: hypothetical protein LOC72568	0.586	0.029	0.505	7e-24
350400841	2805	PREDICTED: hypothetical protein LOC10074	0.586	0.030	0.505	7e-24
383863051	3343	PREDICTED: uncharacterized protein LOC10	0.586	0.025	0.505	1e-23
328716148	1397	PREDICTED: hypothetical protein LOC10016	0.524	0.054	0.565	3e-23
328716144	1495	PREDICTED: hypothetical protein LOC10016	0.524	0.050	0.565	3e-23
328716146	1426	PREDICTED: hypothetical protein LOC10016	0.524	0.053	0.565	4e-23
332019339	1472	PHD finger protein 10 [Acromyrmex echina	0.496	0.048	0.583	6e-23
307177781	3066	Supporter of activation of yellow protei	0.586	0.027	0.505	8e-23

>gi|340719315|ref|XP_003398100.1| PREDICTED: hypothetical protein LOC100644567 [Bombus terrestris]

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 64/89 (71%), Gaps = 4/89 (4%)

Query: 39   KCKAC----DRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
            KCK C    ++ +    +IQCG C  ++HP+C+DL  +M+PH++ Y WQC+DCK+C  C 
Sbjct: 2696 KCKMCLKTLNKHSKNEVLIQCGTCNGHVHPSCIDLTLDMVPHIQSYAWQCTDCKTCAQCH 2755

Query: 95   KAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
               D+DKMLFCD+CDRGYH YC+GL ++P
Sbjct: 2756 DPADEDKMLFCDMCDRGYHIYCVGLRRVP 2784

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029720|ref|XP_003698514.1| PREDICTED: uncharacterized protein LOC100870597 [Apis florea]

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 64/89 (71%), Gaps = 4/89 (4%)

Query: 39   KCKAC----DRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
            KCK C    ++ +    +IQCG C  ++HP+C+DL  +M+PH++ Y WQC+DCK+C  C 
Sbjct: 3091 KCKMCLKTLNKHSKNEVLIQCGTCNGHVHPSCIDLTLDMVPHIQSYAWQCTDCKTCAQCH 3150

Query: 95   KAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
               D+DKMLFCD+CDRGYH YC+GL ++P
Sbjct: 3151 DPADEDKMLFCDMCDRGYHIYCVGLRRVP 3179

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785896|ref|XP_003250672.1| PREDICTED: hypothetical protein LOC725681 [Apis mellifera]

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 64/89 (71%), Gaps = 4/89 (4%)

Query: 39   KCKAC----DRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
            KCK C    ++ +    +IQCG C  ++HP+C+DL  +M+PH++ Y WQC+DCK+C  C 
Sbjct: 2670 KCKMCLKTLNKHSKNEVLIQCGTCNGHVHPSCIDLTLDMVPHIQSYAWQCTDCKTCAQCH 2729

Query: 95   KAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
               D+DKMLFCD+CDRGYH YC+GL ++P
Sbjct: 2730 DPADEDKMLFCDMCDRGYHIYCVGLRRVP 2758

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400841|ref|XP_003485981.1| PREDICTED: hypothetical protein LOC100740971 [Bombus impatiens]

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 64/89 (71%), Gaps = 4/89 (4%)

Query: 39   KCKAC----DRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
            KCK C    ++ +    +IQCG C  ++HP+C+DL  +M+PH++ Y WQC+DCK+C  C 
Sbjct: 2584 KCKMCLKTLNKHSKNEVLIQCGTCNGHVHPSCIDLTLDMVPHIQSYAWQCTDCKTCAQCH 2643

Query: 95   KAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
               D+DKMLFCD+CDRGYH YC+GL ++P
Sbjct: 2644 DPADEDKMLFCDMCDRGYHIYCVGLRRVP 2672

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863051|ref|XP_003706996.1| PREDICTED: uncharacterized protein LOC100875915 [Megachile rotundata]

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 63/89 (70%), Gaps = 4/89 (4%)

Query: 39   KCKAC----DRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
            KCK C    ++      +IQCG C  ++HP+C+DL  +M+PH++ Y WQC+DCK+C  C 
Sbjct: 3122 KCKMCLKTLNKHGKVEVLIQCGTCNGHVHPSCIDLTLDMVPHIQSYAWQCTDCKTCAQCH 3181

Query: 95   KAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
               D+DKMLFCD+CDRGYH YC+GL ++P
Sbjct: 3182 DPADEDKMLFCDMCDRGYHIYCVGLRRVP 3210

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328716148|ref|XP_003245848.1| PREDICTED: hypothetical protein LOC100162709 isoform 3 [Acyrthosiphon pisum]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 48   SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDL 107
            S   +I C KC+   HP CLD+  EM+P++K Y+WQC++CKSC  C++  D+DKMLFCDL
Sbjct: 1296 SVEPLIHCSKCLTIYHPTCLDMTLEMVPYIKRYNWQCNECKSCAQCKEVADEDKMLFCDL 1355

Query: 108  CDRGYHNYCIGLDKIP 123
            CDRGYH YC+GL ++P
Sbjct: 1356 CDRGYHIYCVGLRRVP 1371

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328716144|ref|XP_001947369.2| PREDICTED: hypothetical protein LOC100162709 isoform 1 [Acyrthosiphon pisum]

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 48   SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDL 107
            S   +I C KC+   HP CLD+  EM+P++K Y+WQC++CKSC  C++  D+DKMLFCDL
Sbjct: 1296 SVEPLIHCSKCLTIYHPTCLDMTLEMVPYIKRYNWQCNECKSCAQCKEVADEDKMLFCDL 1355

Query: 108  CDRGYHNYCIGLDKIP 123
            CDRGYH YC+GL ++P
Sbjct: 1356 CDRGYHIYCVGLRRVP 1371

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328716146|ref|XP_003245847.1| PREDICTED: hypothetical protein LOC100162709 isoform 2 [Acyrthosiphon pisum]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 48   SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDL 107
            S   +I C KC+   HP CLD+  EM+P++K Y+WQC++CKSC  C++  D+DKMLFCDL
Sbjct: 1296 SVEPLIHCSKCLTIYHPTCLDMTLEMVPYIKRYNWQCNECKSCAQCKEVADEDKMLFCDL 1355

Query: 108  CDRGYHNYCIGLDKIP 123
            CDRGYH YC+GL ++P
Sbjct: 1356 CDRGYHIYCVGLRRVP 1371

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019339|gb|EGI59845.1| PHD finger protein 10 [Acromyrmex echinatior]

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 57/72 (79%)

Query: 52   MIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRG 111
            +IQCG C   +HP+C+DL  +M+PH++ Y WQC+DCK+CV C    D+DKMLFCD+CDRG
Sbjct: 1268 LIQCGTCNGNVHPSCIDLTLDMVPHIQSYAWQCTDCKTCVQCHDPADEDKMLFCDMCDRG 1327

Query: 112  YHNYCIGLDKIP 123
            YH YC+GL ++P
Sbjct: 1328 YHIYCVGLRRVP 1339

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177781|gb|EFN66778.1| Supporter of activation of yellow protein [Camponotus floridanus]

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 62/89 (69%), Gaps = 4/89 (4%)

Query: 39   KCKAC----DRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
            KCK C    ++      +IQCG C   +HP+C+DL  +M+PH++ Y WQC+DCK+C  C 
Sbjct: 2844 KCKMCLKVLNKHNKNEILIQCGTCNGNVHPSCIDLTLDMVPHIQSYAWQCTDCKTCAQCH 2903

Query: 95   KAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
               D+DKMLFCD+CDRGYH YC+GL ++P
Sbjct: 2904 DPADEDKMLFCDMCDRGYHIYCVGLRRVP 2932

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
WB|WBGene00018013	447	phf-10 [Caenorhabditis elegans	0.613	0.199	0.428	1.3e-21
UNIPROTKB|E1C454	410	LOC100857350 "Uncharacterized	0.593	0.209	0.430	1.1e-20
ZFIN|ZDB-GENE-040426-1573	490	phf10 "PHD finger protein 10"	0.675	0.2	0.364	3.8e-20
UNIPROTKB|Q8WUB8	498	PHF10 "PHD finger protein 10"	0.593	0.172	0.418	8.5e-20
UNIPROTKB|Q2T9V9	410	PHF10 "PHD finger protein 10"	0.593	0.209	0.418	9e-20
UNIPROTKB|F1PR25	497	PHF10 "Uncharacterized protein	0.593	0.173	0.418	1.4e-19
MGI|MGI:1919307	497	Phf10 "PHD finger protein 10"	0.593	0.173	0.418	1.4e-19
RGD|1305266	497	Phf10 "PHD finger protein 10"	0.593	0.173	0.418	1.4e-19
ZFIN|ZDB-GENE-041014-190	391	dpf3 "D4, zinc and double PHD	0.613	0.227	0.415	2.7e-18
FB|FBgn0087008	2006	e(y)3 "enhancer of yellow 3" [	0.489	0.035	0.464	1.2e-17

WB|WBGene00018013 phf-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 257 (95.5 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 39/91 (42%), Positives = 58/91 (63%)

Query:    33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVA 92
             P+  S  C +C++  + GEMI C  C    HP C+++P  M   +K Y+W C DC+ C  
Sbjct:   328 PIDPSRPCDSCEK--TGGEMICCATCKIAYHPQCIEMPERMAALVKTYEWSCVDCRLCSI 385

Query:    93 CEKAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
             C K + +D+++FCD CDRG+H YC+GL K+P
Sbjct:   386 CNKPEKEDEIVFCDRCDRGFHTYCVGLKKLP 416

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C454 LOC100857350 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 247 (92.0 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 37/86 (43%), Positives = 58/86 (67%)

Query:    39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
             K K  ++   A  +I C +C    HP+CLD+  E++  +K Y WQC +CK+C+ C +   
Sbjct:   297 KGKESNKKGKAEALIHCSQCDNSGHPSCLDMTPELVAMIKTYPWQCMECKTCIMCGQPHH 356

Query:    99 DDKMLFCDLCDRGYHNYCIGLDKIPT 124
             +++M+FCD+CDRGYH +C+GLD IP+
Sbjct:   357 EEEMMFCDVCDRGYHTFCVGLDAIPS 382

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1573 phf10 "PHD finger protein 10" [Danio rerio (taxid:7955)]

 Score = 245 (91.3 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query:    25 HAGRPSKKP--VPESDKCKACDRDTSAGE------MIQCGKCVRYLHPACLDLPGEMLPH 76
             H   P  KP  +P +  C  C +   A +      +I C +C    HP+CLD+  +++  
Sbjct:   356 HKSVPGYKPKVIPNAI-CGICQKGKEANKRGKPEALIHCSQCQNSGHPSCLDMSVDLVAK 414

Query:    77 MKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
             +K+Y WQC +CK+C  C++   +++M+FCD CDRG+H +C+G+D IP
Sbjct:   415 IKMYPWQCMECKTCTVCQQPHHEEEMMFCDKCDRGFHTFCVGMDSIP 461

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q8WUB8 PHF10 "PHD finger protein 10" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 8.5e-20, P = 8.5e-20
 Identities = 36/86 (41%), Positives = 57/86 (66%)

Query:    39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
             K K  ++   A  +I C +C    HP+CLD+  E++  +K Y WQC +CK+C+ C +   
Sbjct:   385 KGKESNKKGKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHH 444

Query:    99 DDKMLFCDLCDRGYHNYCIGLDKIPT 124
             +++M+FCD+CDRGYH +C+GL  IP+
Sbjct:   445 EEEMMFCDMCDRGYHTFCVGLGAIPS 470

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0071564 "npBAF complex" evidence=ISS

UNIPROTKB|Q2T9V9 PHF10 "PHD finger protein 10" [Bos taurus (taxid:9913)]

 Score = 239 (89.2 bits), Expect = 9.0e-20, P = 9.0e-20
 Identities = 36/86 (41%), Positives = 56/86 (65%)

Query:    39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
             K K   R   A  ++ C +C    HP+CLD+  E++  +K Y WQC +CK+C+ C +   
Sbjct:   297 KGKESSRRGKAEPLVHCSQCDNSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHH 356

Query:    99 DDKMLFCDLCDRGYHNYCIGLDKIPT 124
             +++M+FCD+CDRGYH +C+GL  IP+
Sbjct:   357 EEEMMFCDVCDRGYHTFCVGLGAIPS 382

GO:0071564 "npBAF complex" evidence=ISS

GO:0007399 "nervous system development" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PR25 PHF10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 240 (89.5 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 36/86 (41%), Positives = 57/86 (66%)

Query:    39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
             K K  ++   A  +I C +C    HP+CLD+  E++  +K Y WQC +CK+C+ C +   
Sbjct:   384 KGKESNKKGKAESLIHCSQCDNSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHH 443

Query:    99 DDKMLFCDLCDRGYHNYCIGLDKIPT 124
             +++M+FCD+CDRGYH +C+GL  IP+
Sbjct:   444 EEEMMFCDVCDRGYHTFCVGLGAIPS 469

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1919307 Phf10 "PHD finger protein 10" [Mus musculus (taxid:10090)]

 Score = 240 (89.5 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 36/86 (41%), Positives = 57/86 (66%)

Query:    39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
             K K  ++   A  +I C +C    HP+CLD+  E++  +K Y WQC +CK+C+ C +   
Sbjct:   384 KGKESNKKGKAESLIHCSQCDNSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHH 443

Query:    99 DDKMLFCDLCDRGYHNYCIGLDKIPT 124
             +++M+FCD+CDRGYH +C+GL  IP+
Sbjct:   444 EEEMMFCDVCDRGYHTFCVGLGAIPS 469

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0071564 "npBAF complex" evidence=IDA

RGD|1305266 Phf10 "PHD finger protein 10" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 36/86 (41%), Positives = 57/86 (66%)

Query:    39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
             K K  ++   A  +I C +C    HP+CLD+  E++  +K Y WQC +CK+C+ C +   
Sbjct:   384 KGKESNKKGKAESLIHCSQCDNSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHH 443

Query:    99 DDKMLFCDLCDRGYHNYCIGLDKIPT 124
             +++M+FCD+CDRGYH +C+GL  IP+
Sbjct:   444 EEEMMFCDVCDRGYHTFCVGLGAIPS 469

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0071564 "npBAF complex" evidence=ISS

ZFIN|ZDB-GENE-041014-190 dpf3 "D4, zinc and double PHD fingers, family 3" [Danio rerio (taxid:7955)]

 Score = 225 (84.3 bits), Expect = 2.7e-18, P = 2.7e-18
 Identities = 42/101 (41%), Positives = 59/101 (58%)

Query:    28 RPSKKP----VPESDKCKAC------DRDTS-AGEMIQCGKCVRYLHPACLDLPGEMLPH 76
             +P K P    +P +D C  C      +R T  A E++ C  C R  HP+CL     M+  
Sbjct:   261 KPQKAPDGSIIP-NDYCDFCLGDSGSNRKTGQAEELVSCSDCGRSGHPSCLQFTDNMMQA 319

Query:    77 MKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCI 117
             ++ Y WQC +CKSC  C  +++DD++LFCD CDRGYH YC+
Sbjct:   320 VRTYQWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCL 360

GO:0008270 "zinc ion binding" evidence=IEA

GO:0042393 "histone binding" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP

GO:0016514 "SWI/SNF complex" evidence=ISS

GO:0048644 "muscle organ morphogenesis" evidence=IMP

GO:0016568 "chromatin modification" evidence=IEA;ISS

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

FB|FBgn0087008 e(y)3 "enhancer of yellow 3" [Drosophila melanogaster (taxid:7227)]

 Score = 227 (85.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
 Identities = 33/71 (46%), Positives = 50/71 (70%)

Query:    53 IQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGY 112
             I+C  C + +HP+C+D+P  M+  ++ Y+WQC+ CK C+ C  +Q   KML+C+ CDRGY
Sbjct:  1714 IRCYTCRKRVHPSCVDMPPRMVGRVRNYNWQCAGCKCCIKCRSSQRPGKMLYCEQCDRGY 1773

Query:   113 HNYCIGLDKIP 123
             H YC+GL  +P
Sbjct:  1774 HIYCLGLRTVP 1784

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005700 "polytene chromosome" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0000791 "euchromatin" evidence=IDA

GO:0048477 "oogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0000792 "heterochromatin" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0016458 "gene silencing" evidence=IMP

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

GO:0070604 "PBAF complex" evidence=IPI

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

GO:0031936 "negative regulation of chromatin silencing" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	145
pfam00628	51	pfam00628, PHD, PHD-finger	2e-06
pfam00628	51	pfam00628, PHD, PHD-finger	1e-04
smart00249	47	smart00249, PHD, PHD zinc finger	2e-04
smart00249	47	smart00249, PHD, PHD zinc finger	0.001

>gnl|CDD|201356 pfam00628, PHD, PHD-finger

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 40 CKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSC 90
          C  C +    GE++ C  C R+ H ACL  P E     +  +W C +CK  
Sbjct: 2  CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPE-GEWYCPECKPK 51

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51

>gnl|CDD|201356 pfam00628, PHD, PHD-finger

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 90  CVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTV 125
           C  C K  DD ++L CD CDR +H  C+G    P  
Sbjct: 2   CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEE 37

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51

>gnl|CDD|214584 smart00249, PHD, PHD zinc finger

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 40 CKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC 87
          C  C +    GE++QC  C R+ H  CL  P           W C  C
Sbjct: 2  CSVCGKPDDGGELLQCDGCDRWYHQTCLGPPLL--EEEPDGKWYCPKC 47

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the RING finger and the FYVE finger. It is not yet known if PHD fingers have a common molecular function. Several reports suggest that it can function as a protein-protein interacton domain and it was recently demonstrated that the PHD finger of p300 can cooperate with the adjacent BROMO domain in nucleosome binding in vitro. Other reports suggesting that the PHD finger is a ubiquitin ligase have been refuted as these domains were RING fingers misidentified as PHD fingers. Length = 47

>gnl|CDD|214584 smart00249, PHD, PHD zinc finger

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 90  CVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
           C  C K  D  ++L CD CDR YH  C+G   + 
Sbjct: 2   CSVCGKPDDGGELLQCDGCDRWYHQTCLGPPLLE 35

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the RING finger and the FYVE finger. It is not yet known if PHD fingers have a common molecular function. Several reports suggest that it can function as a protein-protein interacton domain and it was recently demonstrated that the PHD finger of p300 can cooperate with the adjacent BROMO domain in nucleosome binding in vitro. Other reports suggesting that the PHD finger is a ubiquitin ligase have been refuted as these domains were RING fingers misidentified as PHD fingers. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
KOG1244|consensus	336		99.87
KOG1512|consensus	381		99.82
KOG4443|consensus	694		99.5
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	99.12
KOG4299|consensus	613		99.07
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	98.93
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	98.93
KOG1973|consensus	274		98.92
KOG4299|consensus	613		98.88
KOG0825|consensus	1134		98.83
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	98.69
KOG0957|consensus	707		98.68
KOG0383|consensus	696		98.62
PF15446	175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	98.61
KOG0954|consensus	893		98.58
COG5034	271	TNG2 Chromatin remodeling protein, contains PhD zi	98.52
KOG4323|consensus	464		98.51
KOG1244|consensus	336		98.48
KOG0956|consensus	900		98.46
KOG0955|consensus	1051		98.44
COG5141	669	PHD zinc finger-containing protein [General functi	98.31
KOG1473|consensus	1414		98.19
KOG0825|consensus	1134		98.13
KOG4443|consensus	694		98.09
KOG1245|consensus	1404		98.07
KOG1973|consensus	274		97.97
KOG0957|consensus	707		97.93
KOG0955|consensus	1051		97.83
KOG0383|consensus	696		97.82
COG5034	271	TNG2 Chromatin remodeling protein, contains PhD zi	97.8
KOG1512|consensus	381		97.78
PF13831	36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	97.67
KOG0954|consensus	893		97.6
COG5141	669	PHD zinc finger-containing protein [General functi	97.25
KOG0956|consensus	900		97.24
cd04718	148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	97.07
PF13831	36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	96.98
KOG4323|consensus	464		96.86
KOG1245|consensus	1404		96.36
PF13832	110	zf-HC5HC2H_2: PHD-zinc-finger like domain	95.87
PF15446	175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	95.56
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	94.17
PF13901	202	DUF4206: Domain of unknown function (DUF4206)	93.97
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	93.74
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	93.66
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	93.27
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	93.11
KOG0804|consensus	493		91.49
PF07227	446	DUF1423: Protein of unknown function (DUF1423); In	91.47
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	91.1
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	90.93
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	90.7
PF13771	90	zf-HC5HC2H: PHD-like zinc-binding domain	90.66
KOG1829|consensus	580		90.34
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	90.23
PF13832	110	zf-HC5HC2H_2: PHD-zinc-finger like domain	89.69
KOG4628|consensus	348		89.11
KOG2752|consensus	345		88.77
KOG1246|consensus	904		87.12
KOG1473|consensus	1414		86.01
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	85.44
KOG1952|consensus	950		85.41
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	84.68
KOG1701|consensus	468		83.74
PF00130	53	C1_1: Phorbol esters/diacylglycerol binding domain	80.35
KOG1734|consensus	328		80.06

>KOG1244|consensus

Probab=99.87  E-value=8.2e-24  Score=165.09  Aligned_cols=106  Identities=37%  Similarity=0.853  Sum_probs=95.9

Q ss_pred             CccccccccccccC-------CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCccccccccCCCceecC
Q psy17723         34 VPESDKCKACDRDT-------SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCD  106 (145)
Q Consensus        34 ~~~~~~C~~C~~~~-------~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~Cd  106 (145)
                      +.+...|..|.+..       .+++||.|..|+++-|++||+...+|+..++.+.|+|.+|++|.+||.+.+++.|||||
T Consensus       221 a~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfcd  300 (336)
T KOG1244|consen  221 AQPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFCD  300 (336)
T ss_pred             ccCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEeec
Confidence            45678999997654       34999999999999999999999888888899999999999999999999999999999


Q ss_pred             Cccccccccccc--CCCCCCCCccccccccchhhh
Q psy17723        107 LCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKKK  139 (145)
Q Consensus       107 ~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~~  139 (145)
                      .||++||+|||.  +.+.|+|.|-|..|..+-+++
T Consensus       301 dcdrgyhmyclsppm~eppegswsc~KOG~~~~e~  335 (336)
T KOG1244|consen  301 DCDRGYHMYCLSPPMVEPPEGSWSCHLCLEELKEK  335 (336)
T ss_pred             ccCCceeeEecCCCcCCCCCCchhHHHHHHHHhhc
Confidence            999999999997  888999999999999876654

>KOG1512|consensus

Probab=99.82  E-value=2.4e-21  Score=152.35  Aligned_cols=100  Identities=29%  Similarity=0.658  Sum_probs=90.5

Q ss_pred             cccccccccccCC------CCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCccccccccCCCceecCCcc
Q psy17723         36 ESDKCKACDRDTS------AGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCD  109 (145)
Q Consensus        36 ~~~~C~~C~~~~~------~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~  109 (145)
                      ...+|.+|..+..      .+.||.|..|...+|+.|+.++.+++..++.+.|.|.+|+.|.+|+++..++++||||.||
T Consensus       257 ~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CD  336 (381)
T KOG1512|consen  257 RRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCD  336 (381)
T ss_pred             chhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheecccccc
Confidence            3568999987653      3899999999999999999999988888899999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCCCcccc-ccccc
Q psy17723        110 RGYHNYCIGLDKIPTVGLVFT-LKKKK  135 (145)
Q Consensus       110 ~~yH~~Cl~l~~~p~~~W~C~-~C~~~  135 (145)
                      ++||++|++|..+|.|.|+|. .|..+
T Consensus       337 RG~HT~CVGL~~lP~G~WICD~~C~~~  363 (381)
T KOG1512|consen  337 RGPHTLCVGLQDLPRGEWICDMRCREA  363 (381)
T ss_pred             CCCCccccccccccCccchhhhHHHHh
Confidence            999999999999999999998 35433

>KOG4443|consensus

Probab=99.50  E-value=3.4e-15  Score=128.08  Aligned_cols=101  Identities=27%  Similarity=0.640  Sum_probs=87.6

Q ss_pred             CccccccccccccCCC--CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCccccccccCCCceecCCcccc
Q psy17723         34 VPESDKCKACDRDTSA--GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRG  111 (145)
Q Consensus        34 ~~~~~~C~~C~~~~~~--~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~~~  111 (145)
                      +....+|.+|+..|..  ..|+.|..|+..||++|+..++....  ....|+|+.|++|..|+..++..++++|+.||..
T Consensus        15 ~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~--l~~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDvs   92 (694)
T KOG4443|consen   15 IIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAV--LSGGWRCPSCRVCEACGTTGDPKKFLLCKRCDVS   92 (694)
T ss_pred             hhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHH--hcCCcccCCceeeeeccccCCccccccccccccc
Confidence            3456789999988854  77999999999999999998765432  2346999999999999999999999999999999


Q ss_pred             ccccccc--CCCCCCCCccccccccch
Q psy17723        112 YHNYCIG--LDKIPTVGLVFTLKKKKN  136 (145)
Q Consensus       112 yH~~Cl~--l~~~p~~~W~C~~C~~~~  136 (145)
                      ||.||+.  ++.+|.+.|+|+.|...+
T Consensus        93 yh~yc~~P~~~~v~sg~~~ckk~~~c~  119 (694)
T KOG4443|consen   93 YHCYCQKPPNDKVPSGPWLCKKCTRCR  119 (694)
T ss_pred             ccccccCCccccccCcccccHHHHhhh
Confidence            9999997  889999999999887654

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.12  E-value=9.6e-12  Score=74.86  Aligned_cols=46  Identities=33%  Similarity=0.725  Sum_probs=39.2

Q ss_pred             cCccccccccCCCceecCCcccccccccccCC----CCCCCCcccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIGLD----KIPTVGLVFTLKKK  134 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~----~~p~~~W~C~~C~~  134 (145)
                      +|.+|++.++++.||+|+.|+++||..|+++.    .++.+.|+|+.|+.
T Consensus         1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~   50 (51)
T PF00628_consen    1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP   50 (51)
T ss_dssp             EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred             eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence            57899998888999999999999999999843    33456899999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>KOG4299|consensus

Probab=99.07  E-value=8.3e-11  Score=101.00  Aligned_cols=47  Identities=28%  Similarity=0.559  Sum_probs=42.1

Q ss_pred             cCccccccccCCCceecCCccccccccccc----CCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG----LDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~----l~~~p~~~W~C~~C~~~  135 (145)
                      +|..|++++.-..+++||+|++.||+.||+    ...+|.|.|+|+.|.-.
T Consensus       255 fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k  305 (613)
T KOG4299|consen  255 FCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK  305 (613)
T ss_pred             HHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence            899999988777889999999999999997    56789999999999743

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.93  E-value=1.9e-10  Score=69.18  Aligned_cols=50  Identities=32%  Similarity=0.902  Sum_probs=40.5

Q ss_pred             ccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccccc
Q psy17723         39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS   89 (145)
Q Consensus        39 ~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~   89 (145)
                      +|.+|++.++.+.||.|+.|.++||..|++++..... +....|+|+.|..
T Consensus         1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~-~~~~~w~C~~C~~   50 (51)
T PF00628_consen    1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEE-IPSGDWYCPNCRP   50 (51)
T ss_dssp             EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHS-HHSSSBSSHHHHH
T ss_pred             eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhcc-CCCCcEECcCCcC
Confidence            5889999777899999999999999999999765322 2234999998853

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>smart00249 PHD PHD zinc finger

Probab=98.93  E-value=6.9e-10  Score=64.52  Aligned_cols=44  Identities=34%  Similarity=0.664  Sum_probs=37.5

Q ss_pred             cCccccccccCCCceecCCcccccccccccCC---CCCCCCcccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIGLD---KIPTVGLVFTLK  132 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~---~~p~~~W~C~~C  132 (145)
                      +|.+|++.++++.||.|+.|+++||..|+++.   ..+...|+|+.|
T Consensus         1 ~C~~C~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~~C~~C   47 (47)
T smart00249        1 YCSVCGKPDDGGELLQCDGCDRWYHQTCLGPPLLEEEPDGKWYCPKC   47 (47)
T ss_pred             CcccCCCcCCCCCEEECCCCCchhhhhhCCCcccCCCCCCCEECcCC
Confidence            47789987778899999999999999999843   347789999987

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>KOG1973|consensus

Probab=98.92  E-value=3.6e-10  Score=90.20  Aligned_cols=44  Identities=34%  Similarity=0.483  Sum_probs=39.6

Q ss_pred             ccCCCceecCC--cc-cccccccccCCCCCCCCccccccccchhhhh
Q psy17723         97 QDDDKMLFCDL--CD-RGYHNYCIGLDKIPTVGLVFTLKKKKNKKKK  140 (145)
Q Consensus        97 ~~~~~ll~Cd~--C~-~~yH~~Cl~l~~~p~~~W~C~~C~~~~~~~~  140 (145)
                      ...+.|+-||.  |+ .|||+.|++|...|.|.|||+.|..+.+++.
T Consensus       227 vsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~~~~  273 (274)
T KOG1973|consen  227 VSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAENKKKG  273 (274)
T ss_pred             cccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhhhhccC
Confidence            33789999998  99 9999999999999999999999998877654

>KOG4299|consensus

Probab=98.88  E-value=1.1e-09  Score=94.27  Aligned_cols=51  Identities=33%  Similarity=0.783  Sum_probs=44.4

Q ss_pred             ccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      +++|+.|.+.+.-..+|+|++|+++||+.||+||++. ..++.+.|+|++|+
T Consensus       253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~-eniP~g~W~C~ec~  303 (613)
T KOG4299|consen  253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEP-ENIPPGSWFCPECK  303 (613)
T ss_pred             HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCc-ccCCCCccccCCCe
Confidence            4599999999955666999999999999999999654 56778899999997

>KOG0825|consensus

Probab=98.83  E-value=3.6e-10  Score=99.27  Aligned_cols=47  Identities=30%  Similarity=0.646  Sum_probs=43.7

Q ss_pred             cCccccccccCCCceecCCcccc-ccccccc--CCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRG-YHNYCIG--LDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~-yH~~Cl~--l~~~p~~~W~C~~C~~~  135 (145)
                      .|.+|...+.++.||+||.|+.+ ||+|||+  |.++|-+.|+|+.|.--
T Consensus       217 ~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL  266 (1134)
T KOG0825|consen  217 KCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL  266 (1134)
T ss_pred             cceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence            79999999999999999999999 9999998  78899999999999743

>smart00249 PHD PHD zinc finger

Probab=98.69  E-value=2e-08  Score=58.19  Aligned_cols=47  Identities=32%  Similarity=0.829  Sum_probs=38.8

Q ss_pred             ccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        39 ~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      +|.+|+...+.+.||.|+.|.++||..|+++...  .......|+|+.|
T Consensus         1 ~C~~C~~~~~~~~~i~C~~C~~~~H~~C~~~~~~--~~~~~~~~~C~~C   47 (47)
T smart00249        1 YCSVCGKPDDGGELLQCDGCDRWYHQTCLGPPLL--EEEPDGKWYCPKC   47 (47)
T ss_pred             CcccCCCcCCCCCEEECCCCCchhhhhhCCCccc--CCCCCCCEECcCC
Confidence            4788988776789999999999999999998764  2345679999876

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>KOG0957|consensus

Probab=98.68  E-value=1.9e-08  Score=85.01  Aligned_cols=45  Identities=31%  Similarity=0.664  Sum_probs=39.5

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCC----Cccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTV----GLVFTLKK  133 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~----~W~C~~C~  133 (145)
                      .|.||+++-+.-.++.||.|...||+.||+  |+.+|+.    .|.|.+|-
T Consensus       546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd  596 (707)
T KOG0957|consen  546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD  596 (707)
T ss_pred             eeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence            799999987777889999999999999997  7888854    69999993

>KOG0383|consensus

Probab=98.62  E-value=2e-08  Score=88.43  Aligned_cols=78  Identities=27%  Similarity=0.597  Sum_probs=63.7

Q ss_pred             CCCCCccccCCCCCCCCCCcCCCCcccccccc-------------------cCccccccccCCCceecCCcccccccccc
Q psy17723         57 KCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK-------------------SCVACEKAQDDDKMLFCDLCDRGYHNYCI  117 (145)
Q Consensus        57 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~-------------------~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl  117 (145)
                      .|.+.||..|+++.+..-   ++.+|.|+.|.                   .|.+|+.   .+++|.|+.|..+||.+|+
T Consensus         1 ~~~r~~~~~~~~p~~~~~---~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~---~g~~l~c~tC~~s~h~~cl   74 (696)
T KOG0383|consen    1 TCPRAYHRVCLDPKLKEE---PEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICAD---GGELLWCDTCPASFHASCL   74 (696)
T ss_pred             CCCcccCcCCCCcccccC---CcCCccCcchhhcccccccccCCcchhhhhhhhhhcC---CCcEEEeccccHHHHHHcc
Confidence            378999999999765432   26799999885                   7999997   6799999999999999999


Q ss_pred             c--CCCCCCCCccccccccchhhhh
Q psy17723        118 G--LDKIPTVGLVFTLKKKKNKKKK  140 (145)
Q Consensus       118 ~--l~~~p~~~W~C~~C~~~~~~~~  140 (145)
                      +  +...|.+.|.|+.|.--..+++
T Consensus        75 ~~pl~~~p~~~~~c~Rc~~p~~~~k   99 (696)
T KOG0383|consen   75 GPPLTPQPNGEFICPRCFCPKNAGK   99 (696)
T ss_pred             CCCCCcCCccceeeeeeccCCCccc
Confidence            7  7788888899999954444333

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain

Probab=98.61  E-value=3e-08  Score=73.29  Aligned_cols=80  Identities=25%  Similarity=0.681  Sum_probs=60.6

Q ss_pred             ccccccccC---CCCCcEecCCCCCCccccCCCCCCC---CCCcC--CCCcccccccc--------------cCcccccc
Q psy17723         39 KCKACDRDT---SAGEMIQCGKCVRYLHPACLDLPGE---MLPHM--KLYDWQCSDCK--------------SCVACEKA   96 (145)
Q Consensus        39 ~C~~C~~~~---~~~~ll~C~~C~~~~H~~Cl~~~~~---~~~~~--~~~~W~C~~C~--------------~C~vC~~~   96 (145)
                      +|.+|...|   +.+.||+|.+|..+||..||++...   +++.+  ..+-.+|..|+              .|..|...
T Consensus         1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~   80 (175)
T PF15446_consen    1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP   80 (175)
T ss_pred             CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence            478886543   3489999999999999999998652   23344  23456888886              89999876


Q ss_pred             c-------------------------------------cCC-CceecCCccccccccccc
Q psy17723         97 Q-------------------------------------DDD-KMLFCDLCDRGYHNYCIG  118 (145)
Q Consensus        97 ~-------------------------------------~~~-~ll~Cd~C~~~yH~~Cl~  118 (145)
                      |                                     +.+ .|..|..|.++||+.-|+
T Consensus        81 G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP  140 (175)
T PF15446_consen   81 GPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLP  140 (175)
T ss_pred             CCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCC
Confidence            5                                     222 345699999999999996

>KOG0954|consensus

Probab=98.58  E-value=1.6e-08  Score=88.57  Aligned_cols=94  Identities=31%  Similarity=0.548  Sum_probs=70.3

Q ss_pred             ccccccccccccCC--CCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc-----cCccccccccCCCceecCC
Q psy17723         35 PESDKCKACDRDTS--AGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK-----SCVACEKAQDDDKMLFCDL  107 (145)
Q Consensus        35 ~~~~~C~~C~~~~~--~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~-----~C~vC~~~~~~~~ll~Cd~  107 (145)
                      +++.+|++|..+..  ..+||+|+.|+...|..|+++     .+++.+.|.|..|.     .|..|-..|...+-..=..
T Consensus       269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGI-----le~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT  343 (893)
T KOG0954|consen  269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGI-----LEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGT  343 (893)
T ss_pred             cccceeceecCCCccccceeEEeccchhHHHHhhhce-----eecCCCCeeehhccccCCCCeeeccccCCcccccCCCC
Confidence            46889999998854  389999999999999999998     45667899999996     7888887653221111111


Q ss_pred             cccccccccc-----------c-------CCCCCCCCc--cccccccc
Q psy17723        108 CDRGYHNYCI-----------G-------LDKIPTVGL--VFTLKKKK  135 (145)
Q Consensus       108 C~~~yH~~Cl-----------~-------l~~~p~~~W--~C~~C~~~  135 (145)
                        +|.|..|.           .       ++.||+..|  +|..|..+
T Consensus       344 --~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k  389 (893)
T KOG0954|consen  344 --KWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVK  389 (893)
T ss_pred             --eeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhccc
Confidence              77888886           1       355677788  78888755

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]

Probab=98.52  E-value=3.3e-08  Score=77.27  Aligned_cols=45  Identities=31%  Similarity=0.606  Sum_probs=38.2

Q ss_pred             cCccccccccCCCceecCC--ccc-ccccccccCCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDL--CDR-GYHNYCIGLDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~--C~~-~yH~~Cl~l~~~p~~~W~C~~C~~~  135 (145)
                      +| .|++.. -+.||-||.  |.+ |||+.|++|..+|+|.|+|++|...
T Consensus       223 YC-fCqqvS-yGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~~  270 (271)
T COG5034         223 YC-FCQQVS-YGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKKA  270 (271)
T ss_pred             EE-Eecccc-cccceecCCCCCchhheeccccccCCCCCCcEeCHHhHhc
Confidence            55 677644 689999995  775 9999999999999999999999753

>KOG4323|consensus

Probab=98.51  E-value=1e-07  Score=80.34  Aligned_cols=98  Identities=22%  Similarity=0.386  Sum_probs=69.9

Q ss_pred             ccccccccccccCCC--CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc------------------------
Q psy17723         35 PESDKCKACDRDTSA--GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK------------------------   88 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~--~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~------------------------   88 (145)
                      ..+..|.+|......  .+++.|+.|...||..|--+....     .+.|.+.+|.                        
T Consensus        81 ~~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~-----~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~  155 (464)
T KOG4323|consen   81 SSELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPS-----LDIGESTECVFPIFSQEGGALKKGRLARPSLPYP  155 (464)
T ss_pred             ccccCCcccccccccCchhhhhhhhhccCcccccCccCcCc-----CCccccccccccccccccccccccccccccccCc
Confidence            456678888876643  578899999999999996553211     1233333332                        


Q ss_pred             --------------cCcccc--ccccCCCceecCCccccccccccc------CCCCCCCCccccccccchh
Q psy17723         89 --------------SCVACE--KAQDDDKMLFCDLCDRGYHNYCIG------LDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 --------------~C~vC~--~~~~~~~ll~Cd~C~~~yH~~Cl~------l~~~p~~~W~C~~C~~~~~  137 (145)
                                    .|.||.  .++...+||+|+.|..|||..|+.      +...|...|+|..|....+
T Consensus       156 ~~~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~  226 (464)
T KOG4323|consen  156 EASLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPK  226 (464)
T ss_pred             ccccccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchh
Confidence                          455555  556667999999999999999995      3344778999999986644

>KOG1244|consensus

Probab=98.48  E-value=5.7e-08  Score=76.73  Aligned_cols=49  Identities=27%  Similarity=0.634  Sum_probs=41.4

Q ss_pred             cccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      +-..|.+|+...+.++||+|+.|.+.||++||.|++.   ..+++.|.|--|
T Consensus       280 eck~csicgtsenddqllfcddcdrgyhmyclsppm~---eppegswsc~KO  328 (336)
T KOG1244|consen  280 ECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMV---EPPEGSWSCHLC  328 (336)
T ss_pred             ecceeccccCcCCCceeEeecccCCceeeEecCCCcC---CCCCCchhHHHH
Confidence            3457889998888899999999999999999999873   446889987654

>KOG0956|consensus

Probab=98.46  E-value=8.4e-08  Score=83.66  Aligned_cols=75  Identities=23%  Similarity=0.740  Sum_probs=61.8

Q ss_pred             ccccccccC--CCCCcEecCC--CCCCccccCCCCCCCCCCcCCCCcccccccc--------------------------
Q psy17723         39 KCKACDRDT--SAGEMIQCGK--CVRYLHPACLDLPGEMLPHMKLYDWQCSDCK--------------------------   88 (145)
Q Consensus        39 ~C~~C~~~~--~~~~ll~C~~--C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~--------------------------   88 (145)
                      -|-||.+..  .+..||.||+  |..+.|..|+++     ..++.+.|||..|.                          
T Consensus         7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGI-----vqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~   81 (900)
T KOG0956|consen    7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGI-----VQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNG   81 (900)
T ss_pred             ceeeecCcCCCccCceeeecCCCceeeeehhccee-----EecCCCchhhhhhhhhhhhccceeecccCcccceecccCC
Confidence            477887654  4589999987  999999999998     56778999999996                          


Q ss_pred             -------------------------------------cCccccccccCCC-----ceecC--Cccccccccccc
Q psy17723         89 -------------------------------------SCVACEKAQDDDK-----MLFCD--LCDRGYHNYCIG  118 (145)
Q Consensus        89 -------------------------------------~C~vC~~~~~~~~-----ll~Cd--~C~~~yH~~Cl~  118 (145)
                                                           .|+||.+.|.+.+     -|.|.  .|.++||+.|..
T Consensus        82 GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ  155 (900)
T KOG0956|consen   82 GWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQ  155 (900)
T ss_pred             CceEEEEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhh
Confidence                                                 8999998765433     36775  689999999985

>KOG0955|consensus

Probab=98.44  E-value=1.3e-07  Score=86.43  Aligned_cols=81  Identities=21%  Similarity=0.596  Sum_probs=68.1

Q ss_pred             CCCccccccccccccCCC--CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc---------------------
Q psy17723         32 KPVPESDKCKACDRDTSA--GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK---------------------   88 (145)
Q Consensus        32 ~~~~~~~~C~~C~~~~~~--~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~---------------------   88 (145)
                      ..+..+.+|.||.+....  +..|+||.|+.++|..|++.     +.++++.|+|..|-                     
T Consensus       214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi-----~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkq  288 (1051)
T KOG0955|consen  214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGI-----PFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQ  288 (1051)
T ss_pred             cccCCCccceeecccccCCCceEEEcCCCcchhhhhccCC-----CCCCCCcEeehhhccCcCcccceEeccCCCCccee
Confidence            455678899999998865  89999999999999999995     45678999999995                     


Q ss_pred             ------------------------------------------cCccccccccCCCceecC--Cccccccccccc
Q psy17723         89 ------------------------------------------SCVACEKAQDDDKMLFCD--LCDRGYHNYCIG  118 (145)
Q Consensus        89 ------------------------------------------~C~vC~~~~~~~~ll~Cd--~C~~~yH~~Cl~  118 (145)
                                                                .|.+|+..+ .+.-+.|.  .|-.+||.+|..
T Consensus       289 t~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~-~gaciqcs~~~c~~a~hvtca~  361 (1051)
T KOG0955|consen  289 TDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKG-LGACIQCSKANCYTAFHVTCAR  361 (1051)
T ss_pred             ccCCceeeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCC-CCcceecchhhhhhhhhhhhHh
Confidence                                                      899999865 45667775  689999999983

>COG5141 PHD zinc finger-containing protein [General function prediction only]

Probab=98.31  E-value=2.3e-07  Score=78.41  Aligned_cols=48  Identities=21%  Similarity=0.628  Sum_probs=41.4

Q ss_pred             cccccccccccCCC--CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         36 ESDKCKACDRDTSA--GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        36 ~~~~C~~C~~~~~~--~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      -+++|.+|.++..+  +.+++|++|..+.|..|++++     .++++.|+|..|.
T Consensus       192 ~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~-----f~peG~WlCrkCi  241 (669)
T COG5141         192 FDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQ-----FLPEGFWLCRKCI  241 (669)
T ss_pred             hhhhhHhccccccCCcceEEEecCcchhhhhhcccce-----ecCcchhhhhhhc
Confidence            36789999888754  889999999999999999994     5568899999996

>KOG1473|consensus

Probab=98.19  E-value=4.1e-07  Score=82.86  Aligned_cols=96  Identities=19%  Similarity=0.368  Sum_probs=79.7

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc------------------------
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK------------------------   88 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~------------------------   88 (145)
                      .+.-++.|.+|.+.+   .+++|.+|++.||..|+.++....   +...|+|.-|.                        
T Consensus       340 ~~~~ddhcrf~~d~~---~~lc~Et~prvvhlEcv~hP~~~~---~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~  413 (1414)
T KOG1473|consen  340 EIEYDDHCRFCHDLG---DLLCCETCPRVVHLECVFHPRFAV---PSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHT  413 (1414)
T ss_pred             ceeecccccccCccc---ceeecccCCceEEeeecCCccccC---CCccchhhhhhhhccCcccccccChhhcccceecc
Confidence            445578999999999   999999999999999999987544   36689998775                        


Q ss_pred             ----------------cCccccccccCCCceecCC-ccccccc-cccc----CCCCCCCCccccccccchh
Q psy17723         89 ----------------SCVACEKAQDDDKMLFCDL-CDRGYHN-YCIG----LDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ----------------~C~vC~~~~~~~~ll~Cd~-C~~~yH~-~Cl~----l~~~p~~~W~C~~C~~~~~  137 (145)
                                      .|.+|++   ++.++.|+. |...||+ .||+    -..++++.|+|++|.-++-
T Consensus       414 ~iG~dr~gr~ywfi~rrl~Ie~~---det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM  481 (1414)
T KOG1473|consen  414 PIGRDRYGRKYWFISRRLRIEGM---DETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQM  481 (1414)
T ss_pred             CCCcCccccchhceeeeeEEecC---CCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhc
Confidence                            6777775   567888887 9999999 9998    3457899999999976653

>KOG0825|consensus

Probab=98.13  E-value=1.2e-06  Score=77.56  Aligned_cols=52  Identities=25%  Similarity=0.673  Sum_probs=43.7

Q ss_pred             CccccccccccccCCCCCcEecCCCCCC-ccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         34 VPESDKCKACDRDTSAGEMIQCGKCVRY-LHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        34 ~~~~~~C~~C~~~~~~~~ll~C~~C~~~-~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ......|.+|......+.||.|+.|+.. ||.+||++++.   +++-..|+|.+|.
T Consensus       212 ~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~---eiP~~eWYC~NC~  264 (1134)
T KOG0825|consen  212 SQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLS---ESPVNEWYCTNCS  264 (1134)
T ss_pred             ccccccceeeccCChHHhheeecccccceeeccccCcccc---cccccceecCcch
Confidence            3445679999999988999999999988 99999999873   3446799999884

>KOG4443|consensus

Probab=98.09  E-value=8.9e-07  Score=76.96  Aligned_cols=98  Identities=21%  Similarity=0.570  Sum_probs=74.8

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCcccccc------------------
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKA------------------   96 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~------------------   96 (145)
                      +.-.+|..|+.+|+...+++|+.|..+||-+|+.|+.   .++..+.|+|+.|..|.-|+..                  
T Consensus        66 ~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~---~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c  142 (694)
T KOG4443|consen   66 PSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPN---DKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPC  142 (694)
T ss_pred             CCceeeeeccccCCcccccccccccccccccccCCcc---ccccCcccccHHHHhhhhccccccccchhhhccCcccccc
Confidence            4456788889888899999999999999999999987   4566889999988755555432                  


Q ss_pred             ------------c---cCCCceecCCcccccccccccCCC------CCCCCccccccccc
Q psy17723         97 ------------Q---DDDKMLFCDLCDRGYHNYCIGLDK------IPTVGLVFTLKKKK  135 (145)
Q Consensus        97 ------------~---~~~~ll~Cd~C~~~yH~~Cl~l~~------~p~~~W~C~~C~~~  135 (145)
                                  .   ....|+.|+.|.+|-|..|.++..      .-+..+.|..|+.+
T Consensus       143 ~s~~~cPvc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS~CR~e  202 (694)
T KOG4443|consen  143 ASLSYCPVCLIVYQDSESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCSTCRGE  202 (694)
T ss_pred             cccccCchHHHhhhhccchhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccceeehh
Confidence                        1   122347899999999999987321      11247899999865

>KOG1245|consensus

Probab=98.07  E-value=7.3e-07  Score=84.03  Aligned_cols=52  Identities=29%  Similarity=0.786  Sum_probs=47.8

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchhhhh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKKKK  140 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~~~  140 (145)
                      .|.+|...+....|++|+.|..+||++|+.  +..+|.++|+|+.|++++..+|
T Consensus      1110 ~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~~rr 1163 (1404)
T KOG1245|consen 1110 LCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHRARR 1163 (1404)
T ss_pred             hhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhhhhh
Confidence            899999988888999999999999999997  8899999999999999987444

>KOG1973|consensus

Probab=97.97  E-value=5.2e-06  Score=66.36  Aligned_cols=45  Identities=33%  Similarity=0.872  Sum_probs=33.9

Q ss_pred             ccccccccccCCCCCcEecCC--CC-CCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQCGK--CV-RYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~--C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ..+| +|. ....++||.||.  |. .+||+.|+++.     ..+.+.|+|+.|+
T Consensus       219 ~~yC-~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~-----~~PkgkWyC~~C~  266 (274)
T KOG1973|consen  219 PTYC-ICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLK-----TKPKGKWYCPRCK  266 (274)
T ss_pred             CEEE-Eec-ccccccccccCCCCCCcceEEEeccccc-----cCCCCcccchhhh
Confidence            3445 444 333459999998  99 99999999994     4456789999885

>KOG0957|consensus

Probab=97.93  E-value=8e-06  Score=69.48  Aligned_cols=52  Identities=35%  Similarity=0.779  Sum_probs=45.1

Q ss_pred             cccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcC-CCCccccccc
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHM-KLYDWQCSDC   87 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~-~~~~W~C~~C   87 (145)
                      -...|.||+...+...|+.||.|...||+.||+||+.-++.. +++.|+|.+|
T Consensus       543 ~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC  595 (707)
T KOG0957|consen  543 MNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC  595 (707)
T ss_pred             cceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence            356899999999889999999999999999999999766554 4789988876

>KOG0955|consensus

Probab=97.83  E-value=7.9e-06  Score=75.01  Aligned_cols=49  Identities=22%  Similarity=0.517  Sum_probs=43.2

Q ss_pred             cCccccccccC--CCceecCCcccccccccccCCCCCCCCccccccccchh
Q psy17723         89 SCVACEKAQDD--DKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~~--~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~~  137 (145)
                      +|.||....-.  ..+|+||.|+.++|.+|.+...+|+|.|+|..|.-...
T Consensus       221 ~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~  271 (1051)
T KOG0955|consen  221 VCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQ  271 (1051)
T ss_pred             cceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcC
Confidence            89999986543  78899999999999999999999999999999985543

>KOG0383|consensus

Probab=97.82  E-value=9.5e-06  Score=71.86  Aligned_cols=48  Identities=25%  Similarity=0.654  Sum_probs=40.7

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      .+...|.+|+..|   .+|+|++|..+||..|+++++..   .+...|.|+.|.
T Consensus        45 ~~~e~c~ic~~~g---~~l~c~tC~~s~h~~cl~~pl~~---~p~~~~~c~Rc~   92 (696)
T KOG0383|consen   45 AEQEACRICADGG---ELLWCDTCPASFHASCLGPPLTP---QPNGEFICPRCF   92 (696)
T ss_pred             hhhhhhhhhcCCC---cEEEeccccHHHHHHccCCCCCc---CCccceeeeeec
Confidence            4567899999999   99999999999999999998743   334459999885

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]

Probab=97.80  E-value=1.7e-05  Score=62.23  Aligned_cols=45  Identities=29%  Similarity=0.826  Sum_probs=35.3

Q ss_pred             ccccccccccCCCCCcEecCC--C-CCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQCGK--C-VRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~--C-~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      +..| .|.+.. .++||.||+  | -.+||+.|++.     ...+.+.|+|++|+
T Consensus       221 ~lYC-fCqqvS-yGqMVaCDn~nCkrEWFH~~CVGL-----k~pPKG~WYC~eCk  268 (271)
T COG5034         221 ELYC-FCQQVS-YGQMVACDNANCKREWFHLECVGL-----KEPPKGKWYCPECK  268 (271)
T ss_pred             eeEE-Eecccc-cccceecCCCCCchhheecccccc-----CCCCCCcEeCHHhH
Confidence            3445 576543 569999988  8 58999999998     45668999999985

>KOG1512|consensus

Probab=97.78  E-value=1.1e-05  Score=64.45  Aligned_cols=44  Identities=25%  Similarity=0.632  Sum_probs=38.1

Q ss_pred             ccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCS   85 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~   85 (145)
                      -..|.+|+++.-.+++++||.|++.||.+|++.     ..++.+.|.|.
T Consensus       314 C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL-----~~lP~G~WICD  357 (381)
T KOG1512|consen  314 CELCRICLGPVIESEHLFCDVCDRGPHTLCVGL-----QDLPRGEWICD  357 (381)
T ss_pred             cHhhhccCCcccchheeccccccCCCCcccccc-----ccccCccchhh
Confidence            346888888888899999999999999999998     46678999886

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A

Probab=97.67  E-value=7.4e-06  Score=45.98  Aligned_cols=34  Identities=26%  Similarity=0.681  Sum_probs=20.4

Q ss_pred             CCceecCCcccccccccccCCCCCCC-Cccccccc
Q psy17723        100 DKMLFCDLCDRGYHNYCIGLDKIPTV-GLVFTLKK  133 (145)
Q Consensus       100 ~~ll~Cd~C~~~yH~~Cl~l~~~p~~-~W~C~~C~  133 (145)
                      +.||+|+.|.-.+|..|-++..+|.+ .|+|..|+
T Consensus         2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~   36 (36)
T PF13831_consen    2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE   36 (36)
T ss_dssp             CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred             CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence            46899999999999999998888877 89998874

>KOG0954|consensus

Probab=97.60  E-value=1.9e-05  Score=69.66  Aligned_cols=47  Identities=23%  Similarity=0.577  Sum_probs=43.1

Q ss_pred             cCccccccc--cCCCceecCCcccccccccccCCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQ--DDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~--~~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~  135 (145)
                      .|-||..++  ...+|||||.|....|..|.++.++|++.|+|..|.-+
T Consensus       273 iCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg  321 (893)
T KOG0954|consen  273 ICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALG  321 (893)
T ss_pred             eeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhcccc
Confidence            899999875  35799999999999999999999999999999999876

>COG5141 PHD zinc finger-containing protein [General function prediction only]

Probab=97.25  E-value=9.3e-05  Score=63.02  Aligned_cols=47  Identities=21%  Similarity=0.531  Sum_probs=40.5

Q ss_pred             ccCcccccccc--CCCceecCCcccccccccccCCCCCCCCcccccccc
Q psy17723         88 KSCVACEKAQD--DDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKK  134 (145)
Q Consensus        88 ~~C~vC~~~~~--~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~  134 (145)
                      ..|.+|.....  ...+++||+|+-+.|..|.++.-+|+|.|+|..|.-
T Consensus       194 ~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~  242 (669)
T COG5141         194 DICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIY  242 (669)
T ss_pred             hhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcc
Confidence            37788887543  467799999999999999999999999999999973

>KOG0956|consensus

Probab=97.24  E-value=0.00012  Score=64.49  Aligned_cols=49  Identities=20%  Similarity=0.577  Sum_probs=40.5

Q ss_pred             Cccccc-ccc-CCCceecC--CcccccccccccCCCCCCCCccccccccchhh
Q psy17723         90 CVACEK-AQD-DDKMLFCD--LCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKK  138 (145)
Q Consensus        90 C~vC~~-~~~-~~~ll~Cd--~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~~~  138 (145)
                      |-||-+ .|+ +..||+||  .|-.+.|..|.++..+|.|.|||..|....+-
T Consensus         8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqera   60 (900)
T KOG0956|consen    8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERA   60 (900)
T ss_pred             eeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhh
Confidence            447765 344 56889999  59999999999999999999999999876553

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=97.07  E-value=0.00035  Score=50.99  Aligned_cols=24  Identities=33%  Similarity=0.694  Sum_probs=20.7

Q ss_pred             CccccCCCCCCCCCCcCCCCccccccc
Q psy17723         61 YLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        61 ~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      .||+.||+||+.   .++.++|+||.|
T Consensus         1 g~H~~CL~Ppl~---~~P~g~W~Cp~C   24 (148)
T cd04718           1 GFHLCCLRPPLK---EVPEGDWICPFC   24 (148)
T ss_pred             CcccccCCCCCC---CCCCCCcCCCCC
Confidence            499999999984   556899999988

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A

Probab=96.98  E-value=8.4e-05  Score=41.66  Aligned_cols=34  Identities=24%  Similarity=0.702  Sum_probs=18.5

Q ss_pred             CCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         50 GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        50 ~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      +.||.|++|...+|..|++.....    ....|+|..|
T Consensus         2 n~ll~C~~C~v~VH~~CYGv~~~~----~~~~W~C~~C   35 (36)
T PF13831_consen    2 NPLLFCDNCNVAVHQSCYGVSEVP----DGDDWLCDRC   35 (36)
T ss_dssp             CEEEE-SSS--EEEHHHHT-SS------SS-----HHH
T ss_pred             CceEEeCCCCCcCChhhCCcccCC----CCCcEECCcC
Confidence            479999999999999999985321    1236999866

>KOG4323|consensus

Probab=96.86  E-value=0.00033  Score=59.48  Aligned_cols=49  Identities=29%  Similarity=0.715  Sum_probs=37.6

Q ss_pred             ccccccccCC--CCCcEecCCCCCCccccCCCCCCCCC-CcCCCCccccccc
Q psy17723         39 KCKACDRDTS--AGEMIQCGKCVRYLHPACLDLPGEML-PHMKLYDWQCSDC   87 (145)
Q Consensus        39 ~C~~C~~~~~--~~~ll~C~~C~~~~H~~Cl~~~~~~~-~~~~~~~W~C~~C   87 (145)
                      .|.+|..++.  ...||+|+.|..+||..|..+..... -.-+.+.|+|..|
T Consensus       170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C  221 (464)
T KOG4323|consen  170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVC  221 (464)
T ss_pred             eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhh
Confidence            4999886664  37999999999999999999875432 2235789977755

>KOG1245|consensus

Probab=96.36  E-value=0.00073  Score=64.35  Aligned_cols=52  Identities=27%  Similarity=0.682  Sum_probs=45.2

Q ss_pred             CccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         34 VPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        34 ~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ......|.+|...+..+.|+.|+.|...||..|+.+.+.   .++.++|+|+.|.
T Consensus      1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~---~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALS---SVPPGDWMCPSCR 1156 (1404)
T ss_pred             ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhc---cCCcCCccCCccc
Confidence            345679999999998899999999999999999999764   4457799999996

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain

Probab=95.87  E-value=0.007  Score=41.52  Aligned_cols=71  Identities=17%  Similarity=0.447  Sum_probs=48.0

Q ss_pred             ccccccccCCCCCcEecCCCCCCccccCCCCCCCCC------------CcCCCCcccccccccCccccccccCCCceecC
Q psy17723         39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEML------------PHMKLYDWQCSDCKSCVACEKAQDDDKMLFCD  106 (145)
Q Consensus        39 ~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~------------~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~Cd  106 (145)
                      .|.+|...+   ..+.-..-+.+.|..|+-...+..            ..++...|    =..|.+|++.  .+..+.|.
T Consensus         2 ~C~lC~~~~---Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~----~~~C~iC~~~--~G~~i~C~   72 (110)
T PF13832_consen    2 SCVLCPKRG---GALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRF----KLKCSICGKS--GGACIKCS   72 (110)
T ss_pred             ccEeCCCCC---CcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhc----CCcCcCCCCC--CceeEEcC
Confidence            588898876   455555568999999976533210            11111111    1278899986  56789999


Q ss_pred             C--ccccccccccc
Q psy17723        107 L--CDRGYHNYCIG  118 (145)
Q Consensus       107 ~--C~~~yH~~Cl~  118 (145)
                      .  |..+||..|..
T Consensus        73 ~~~C~~~fH~~CA~   86 (110)
T PF13832_consen   73 HPGCSTAFHPTCAR   86 (110)
T ss_pred             CCCCCcCCCHHHHH
Confidence            8  99999999984

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain

Probab=95.56  E-value=0.0054  Score=45.64  Aligned_cols=51  Identities=24%  Similarity=0.589  Sum_probs=36.9

Q ss_pred             cCcccc---ccccCCCceecCCccccccccccc--------CCCCCCCC--ccccccccchhhh
Q psy17723         89 SCVACE---KAQDDDKMLFCDLCDRGYHNYCIG--------LDKIPTVG--LVFTLKKKKNKKK  139 (145)
Q Consensus        89 ~C~vC~---~~~~~~~ll~Cd~C~~~yH~~Cl~--------l~~~p~~~--W~C~~C~~~~~~~  139 (145)
                      .|.+|+   ....-+.||+|-+|-.+||..||+        .+++-++.  ..|..|..-.++|
T Consensus         1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kK   64 (175)
T PF15446_consen    1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKK   64 (175)
T ss_pred             CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcc
Confidence            366774   333467999999999999999997        34454443  4688888766655

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=94.17  E-value=0.025  Score=34.42  Aligned_cols=30  Identities=30%  Similarity=0.762  Sum_probs=26.1

Q ss_pred             cCcccccccc-CCCceecCCccccccccccc
Q psy17723         89 SCVACEKAQD-DDKMLFCDLCDRGYHNYCIG  118 (145)
Q Consensus        89 ~C~vC~~~~~-~~~ll~Cd~C~~~yH~~Cl~  118 (145)
                      .|.+|++.-. ++.+|+|..|..-||..|..
T Consensus         7 ~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~   37 (54)
T PF14446_consen    7 KCPVCGKKFKDGDDIVVCPECGAPYHRDCWE   37 (54)
T ss_pred             cChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence            7889998653 78899999999999999974

>PF13901 DUF4206: Domain of unknown function (DUF4206)

Probab=93.97  E-value=0.03  Score=42.86  Aligned_cols=49  Identities=20%  Similarity=0.548  Sum_probs=35.7

Q ss_pred             cccccc----cCccccccc-----cCCCceecCCcccccccccccCCCCCCCCccccccccchhh
Q psy17723         83 QCSDCK----SCVACEKAQ-----DDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKK  138 (145)
Q Consensus        83 ~C~~C~----~C~vC~~~~-----~~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~~~  138 (145)
                      .|+-|.    +|.+|...+     +.+..+.|..|...||..|...       =.||.|...+++
T Consensus       144 ~C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~R~~~r  201 (202)
T PF13901_consen  144 SCELCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-------KSCPKCARRQKR  201 (202)
T ss_pred             HhHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-------CCCCCcHhHhcc
Confidence            455554    888998653     3457789999999999999762       129999865543

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=93.74  E-value=0.041  Score=33.47  Aligned_cols=34  Identities=21%  Similarity=0.624  Sum_probs=29.4

Q ss_pred             ccccccccccCC-CCCcEecCCCCCCccccCCCCC
Q psy17723         37 SDKCKACDRDTS-AGEMIQCGKCVRYLHPACLDLP   70 (145)
Q Consensus        37 ~~~C~~C~~~~~-~~~ll~C~~C~~~~H~~Cl~~~   70 (145)
                      ...|.+|+..-. .++.|.|..|+..||..|....
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~   39 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA   39 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhhC
Confidence            458999998875 5899999999999999998654

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=93.66  E-value=0.034  Score=36.95  Aligned_cols=45  Identities=20%  Similarity=0.421  Sum_probs=30.6

Q ss_pred             CccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccch
Q psy17723         90 CVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKN  136 (145)
Q Consensus        90 C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~  136 (145)
                      |..|..+|++-.++... |...||..|+-  +... .+.=.||.|+..-
T Consensus        35 Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~w   81 (85)
T PF12861_consen   35 CPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQPW   81 (85)
T ss_pred             CCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCee
Confidence            33455566555666554 99999999996  5432 3345999998753

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=93.27  E-value=0.0024  Score=36.76  Aligned_cols=42  Identities=19%  Similarity=0.517  Sum_probs=28.0

Q ss_pred             cccccccccCCC-CCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         38 DKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        38 ~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      +.|.||.+.-.. +.++.-. |+..||..|+..++..       ...||.|
T Consensus         1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~-------~~~CP~C   43 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR-------NNSCPVC   43 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH-------SSB-TTT
T ss_pred             CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh-------CCcCCcc
Confidence            468899887754 4444444 9999999999876521       2367765

...

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=93.11  E-value=0.015  Score=33.34  Aligned_cols=41  Identities=20%  Similarity=0.413  Sum_probs=25.9

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKK  133 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~  133 (145)
                      .|.||...-..+..++--.|+..||..|+.  +...    ..||.|+
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~----~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN----NSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC----CcCCccC
Confidence            467788765433333333499999999997  4331    3888885

...

>KOG0804|consensus

Probab=91.49  E-value=0.11  Score=44.13  Aligned_cols=40  Identities=20%  Similarity=0.247  Sum_probs=31.4

Q ss_pred             CCccccccccccccCCC-CCcEecCCCCCCccccCCCCCCC
Q psy17723         33 PVPESDKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPGE   72 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~   72 (145)
                      ...+-+.|.||...-+. ..+|.=.-|..+||-.|+..|..
T Consensus       171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~  211 (493)
T KOG0804|consen  171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD  211 (493)
T ss_pred             CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc
Confidence            33467899999987765 55667777999999999988753

>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []

Probab=91.47  E-value=0.13  Score=43.75  Aligned_cols=54  Identities=26%  Similarity=0.413  Sum_probs=40.4

Q ss_pred             cccccccccCcccccccc---CCCceecCCccccccccccc---CC------C----CCCCCccccccccc
Q psy17723         81 DWQCSDCKSCVACEKAQD---DDKMLFCDLCDRGYHNYCIG---LD------K----IPTVGLVFTLKKKK  135 (145)
Q Consensus        81 ~W~C~~C~~C~vC~~~~~---~~~ll~Cd~C~~~yH~~Cl~---l~------~----~p~~~W~C~~C~~~  135 (145)
                      +=+|..| .|.+|.+.++   +-..|.||.|+.|-|+.|.=   +.      .    ..++.++|..|-+.
T Consensus       123 ~gFC~~C-~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~  192 (446)
T PF07227_consen  123 PGFCRRC-MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKT  192 (446)
T ss_pred             CCccccC-CccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCCh
Confidence            5679999 8999998653   33559999999999999972   11      0    12457999999765

Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=91.10  E-value=0.12  Score=32.88  Aligned_cols=48  Identities=15%  Similarity=0.323  Sum_probs=18.6

Q ss_pred             cCccccccc---cCCCceecC--Cccccccccccc--C---CCC----CCCCccccccccch
Q psy17723         89 SCVACEKAQ---DDDKMLFCD--LCDRGYHNYCIG--L---DKI----PTVGLVFTLKKKKN  136 (145)
Q Consensus        89 ~C~vC~~~~---~~~~ll~Cd--~C~~~yH~~Cl~--l---~~~----p~~~W~C~~C~~~~  136 (145)
                      .|.||...-   +....++|+  .|...||..||.  +   +..    ....+.||.|...-
T Consensus         4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i   65 (70)
T PF11793_consen    4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI   65 (70)
T ss_dssp             S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred             CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence            466777542   223458898  999999999995  1   111    11246799998653

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=90.93  E-value=0.044  Score=34.95  Aligned_cols=51  Identities=20%  Similarity=0.261  Sum_probs=20.0

Q ss_pred             ccccccccccCC---CCCcEecC--CCCCCccccCCCCCCCCCC----cCCCCccccccc
Q psy17723         37 SDKCKACDRDTS---AGEMIQCG--KCVRYLHPACLDLPGEMLP----HMKLYDWQCSDC   87 (145)
Q Consensus        37 ~~~C~~C~~~~~---~~~ll~C~--~C~~~~H~~Cl~~~~~~~~----~~~~~~W~C~~C   87 (145)
                      +..|.||.+...   ....+.|.  .|+..||..||..++...+    .+....+.||.|
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C   61 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYC   61 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCC
Confidence            457899987643   23468997  7999999999987753211    122234567766

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=90.70  E-value=0.083  Score=27.94  Aligned_cols=29  Identities=34%  Similarity=0.691  Sum_probs=12.6

Q ss_pred             cCccccccccCCCceecCCcccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCI  117 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl  117 (145)
                      .|.+|+...+++....|..|+=..|..|.
T Consensus         2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca   30 (30)
T PF07649_consen    2 RCDACGKPIDGGWFYRCSECDFDLHEECA   30 (30)
T ss_dssp             --TTTS----S--EEE-TTT-----HHHH
T ss_pred             cCCcCCCcCCCCceEECccCCCccChhcC
Confidence            58899988766577889999999998873

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain

Probab=90.66  E-value=0.095  Score=34.40  Aligned_cols=33  Identities=30%  Similarity=0.745  Sum_probs=28.0

Q ss_pred             ccccccccccc-CCCCCcEecCC--CCCCccccCCCCCC
Q psy17723         36 ESDKCKACDRD-TSAGEMIQCGK--CVRYLHPACLDLPG   71 (145)
Q Consensus        36 ~~~~C~~C~~~-~~~~~ll~C~~--C~~~~H~~Cl~~~~   71 (145)
                      ....|.+|+.. |   ..|.|..  |...||+.|+....
T Consensus        35 ~~~~C~~C~~~~G---a~i~C~~~~C~~~fH~~CA~~~~   70 (90)
T PF13771_consen   35 RKLKCSICKKKGG---ACIGCSHPGCSRSFHVPCARKAG   70 (90)
T ss_pred             hCCCCcCCCCCCC---eEEEEeCCCCCcEEChHHHccCC
Confidence            35689999999 7   9999955  99999999987643

>KOG1829|consensus

Probab=90.34  E-value=0.093  Score=46.12  Aligned_cols=48  Identities=15%  Similarity=0.362  Sum_probs=33.5

Q ss_pred             CCCCCCCCc-cccccccccccCCC---CCcEecCCCCCCccccCCCCCCCCC
Q psy17723         27 GRPSKKPVP-ESDKCKACDRDTSA---GEMIQCGKCVRYLHPACLDLPGEML   74 (145)
Q Consensus        27 ~~p~~~~~~-~~~~C~~C~~~~~~---~~ll~C~~C~~~~H~~Cl~~~~~~~   74 (145)
                      ..|....+. .+-.|..|+..-..   ..+-.|.-.|+.|+..|.......+
T Consensus       329 ~~~re~gL~aQ~~~CAgC~~~i~~~~~~~~R~C~y~G~y~C~~Ch~~~~svI  380 (580)
T KOG1829|consen  329 AIPREKGLDAQNFRCAGCGHTIGPDLEQRPRLCRYLGKYFCDCCHQNDKSVI  380 (580)
T ss_pred             CcchhhhhhccCceecccCCCcccccccchhHhhhhhhhhCchhcccCcccc
Confidence            334444444 34589999987652   5566889999999999987765443

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=90.23  E-value=0.089  Score=34.98  Aligned_cols=47  Identities=21%  Similarity=0.353  Sum_probs=29.5

Q ss_pred             cccccccccccC-----------CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         36 ESDKCKACDRDT-----------SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        36 ~~~~C~~C~~~~-----------~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      +++.|.||+...           +.-.++.. .|+..||.-|+..+++..    ...-+||-|
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~----~~~~~CPmC   77 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQ----SSKGQCPMC   77 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeec-cCccHHHHHHHHHHHccc----cCCCCCCCc
Confidence            366666665544           33445544 499999999998886532    123467755

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain

Probab=89.69  E-value=0.15  Score=34.81  Aligned_cols=33  Identities=30%  Similarity=0.769  Sum_probs=27.6

Q ss_pred             cccccccccccCCCCCcEecCC--CCCCccccCCCCC
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGK--CVRYLHPACLDLP   70 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~--C~~~~H~~Cl~~~   70 (145)
                      ....|.+|+..+  +.++.|..  |...||+.|+...
T Consensus        54 ~~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~~   88 (110)
T PF13832_consen   54 FKLKCSICGKSG--GACIKCSHPGCSTAFHPTCARKA   88 (110)
T ss_pred             cCCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHHC
Confidence            367899999963  38999988  9999999998664

>KOG4628|consensus

Probab=89.11  E-value=0.21  Score=41.33  Aligned_cols=35  Identities=26%  Similarity=0.513  Sum_probs=29.0

Q ss_pred             cccccccccCCCCCcEecCCCCCCccccCCCCCCC
Q psy17723         38 DKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGE   72 (145)
Q Consensus        38 ~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~   72 (145)
                      +.|.+|.+.-..++.|.=--|.+.||..|+++|+.
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~  264 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLT  264 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHh
Confidence            59999998876655555578999999999999974

>KOG2752|consensus

Probab=88.77  E-value=0.28  Score=40.05  Aligned_cols=29  Identities=28%  Similarity=0.872  Sum_probs=22.6

Q ss_pred             cCccccccc------cCCCceecCCcccccc-ccccc
Q psy17723         89 SCVACEKAQ------DDDKMLFCDLCDRGYH-NYCIG  118 (145)
Q Consensus        89 ~C~vC~~~~------~~~~ll~Cd~C~~~yH-~~Cl~  118 (145)
                      +| .|....      .++.|++|..|..||| ..|++
T Consensus       130 ~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~  165 (345)
T KOG2752|consen  130 FC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQ  165 (345)
T ss_pred             eE-EecCCCCCccccccceeeeEEeccchhcccccCc
Confidence            55 666543      2468999999999999 88885

>KOG1246|consensus

Probab=87.12  E-value=0.47  Score=43.90  Aligned_cols=46  Identities=33%  Similarity=0.822  Sum_probs=39.3

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~  135 (145)
                      .|..|.+...+ .++.|+.|++.||.+|+.  ++.++++.|.|+.|...
T Consensus       157 ~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (904)
T KOG1246|consen  157 QCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT  204 (904)
T ss_pred             hhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence            67778876655 555999999999999997  88899999999999876

>KOG1473|consensus

Probab=86.01  E-value=0.45  Score=44.84  Aligned_cols=42  Identities=21%  Similarity=0.414  Sum_probs=37.4

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKK  133 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~  133 (145)
                      .|.+|..   .+.+++|..|++.||..|+.  +.++|+..|-|-.|.
T Consensus       346 hcrf~~d---~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~  389 (1414)
T KOG1473|consen  346 HCRFCHD---LGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCN  389 (1414)
T ss_pred             cccccCc---ccceeecccCCceEEeeecCCccccCCCccchhhhhh
Confidence            7888887   67899999999999999997  778899999999887

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.44  E-value=0.34  Score=30.99  Aligned_cols=27  Identities=22%  Similarity=0.402  Sum_probs=18.9

Q ss_pred             eecCCccccccccccc--CCCCCCCCccccccc
Q psy17723        103 LFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKK  133 (145)
Q Consensus       103 l~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~  133 (145)
                      +.=..|+..||..|+.  |...    ..||.|+
T Consensus        45 i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR   73 (73)
T PF12678_consen   45 IVWGPCGHIFHFHCISQWLKQN----NTCPLCR   73 (73)
T ss_dssp             EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred             eEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence            3446799999999997  5322    3899885

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG1952|consensus

Probab=85.41  E-value=0.11  Score=47.32  Aligned_cols=52  Identities=17%  Similarity=0.537  Sum_probs=40.9

Q ss_pred             ccccccccccCCC-CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         37 SDKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ...|.||...-.. ..+-.|.+|...||+.|+..|...........|.||.|.
T Consensus       191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq  243 (950)
T KOG1952|consen  191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ  243 (950)
T ss_pred             ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence            4579999877654 678889999999999999887654333334799999996

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=84.68  E-value=0.39  Score=26.30  Aligned_cols=41  Identities=17%  Similarity=0.289  Sum_probs=27.2

Q ss_pred             CccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccc
Q psy17723         90 CVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        90 C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~  135 (145)
                      |.+|....  ...+.-..|+..||..|+.  +..   +...||.|+..
T Consensus         2 C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~~   44 (45)
T cd00162           2 CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRTP   44 (45)
T ss_pred             CCcCchhh--hCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCCc
Confidence            56676543  2344455699999999986  322   56779998753

>KOG1701|consensus

Probab=83.74  E-value=1.1  Score=38.09  Aligned_cols=79  Identities=20%  Similarity=0.251  Sum_probs=47.9

Q ss_pred             CCCCccccCC---------CCCCCCCCcCCCCcccccccc------cCccccccc---c-CCCceecCCccccccccccc
Q psy17723         58 CVRYLHPACL---------DLPGEMLPHMKLYDWQCSDCK------SCVACEKAQ---D-DDKMLFCDLCDRGYHNYCIG  118 (145)
Q Consensus        58 C~~~~H~~Cl---------~~~~~~~~~~~~~~W~C~~C~------~C~vC~~~~---~-~~~ll~Cd~C~~~yH~~Cl~  118 (145)
                      ++++||+.|.         +-..-  .......-+|..+-      +|.+|+..-   + .++.+.--.=|+-||+.|..
T Consensus       352 ~GkayHp~CF~Cv~C~r~ldgipF--tvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~etvRvvamdr~fHv~CY~  429 (468)
T KOG1701|consen  352 LGKAYHPGCFTCVVCARCLDGIPF--TVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGKDETVRVVAMDRDFHVNCYK  429 (468)
T ss_pred             cccccCCCceEEEEeccccCCccc--cccCCCceeeehhhhhhcCcchhhccCCccCCCCCcceEEEEEcccccccccee
Confidence            5778998763         22111  11123466776663      899999752   2 23344455558999999983


Q ss_pred             -------CCCCC--------CCCccccccccchhh
Q psy17723        119 -------LDKIP--------TVGLVFTLKKKKNKK  138 (145)
Q Consensus       119 -------l~~~p--------~~~W~C~~C~~~~~~  138 (145)
                             |+...        ++..+|..|..++..
T Consensus       430 CEDCg~~LS~e~e~qgCyPld~HllCk~Ch~~Rl~  464 (468)
T KOG1701|consen  430 CEDCGLLLSSEEEGQGCYPLDGHLLCKTCHLKRLQ  464 (468)
T ss_pred             hhhcCccccccCCCCcceeccCceeechhhhhhhc
Confidence                   54333        346899999776543

>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger

Probab=80.35  E-value=1.5  Score=25.71  Aligned_cols=30  Identities=23%  Similarity=0.492  Sum_probs=23.1

Q ss_pred             cCccccccc--cCCCceecCCccccccccccc
Q psy17723         89 SCVACEKAQ--DDDKMLFCDLCDRGYHNYCIG  118 (145)
Q Consensus        89 ~C~vC~~~~--~~~~ll~Cd~C~~~yH~~Cl~  118 (145)
                      .|.+|++.-  .....+.|..|...+|..|+.
T Consensus        13 ~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~   44 (53)
T PF00130_consen   13 YCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS   44 (53)
T ss_dssp             B-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred             CCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence            688888754  456679999999999999987

Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....

>KOG1734|consensus

Probab=80.06  E-value=0.75  Score=36.97  Aligned_cols=39  Identities=13%  Similarity=0.232  Sum_probs=27.1

Q ss_pred             CCccccccccccccCCC----CCc---EecCCCCCCccccCCCCCC
Q psy17723         33 PVPESDKCKACDRDTSA----GEM---IQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~----~~l---l~C~~C~~~~H~~Cl~~~~   71 (145)
                      .-.++.+|.+|++.-+.    +.+   +.=-+|+..||-+|+..+-
T Consensus       220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWc  265 (328)
T KOG1734|consen  220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWC  265 (328)
T ss_pred             CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhe
Confidence            33467899999987543    112   2224589999999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
2kwj_A	114	Solution Structures Of The Double Phd Fingers Of Hu		1e-15
2ln0_A	110	Structure Of Moz Length = 110		7e-12
3v43_A	112	Crystal Structure Of Moz Length = 112		7e-12
2ysm_A	111	Solution Structure Of The First And Second Phd Doma		4e-11

>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human Transcriptional Protein Dpf3 Bound To A Histone Peptide Containing Acetylation At Lysine 14 Length = 114

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 51  EMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDR 110
           E++ C  C R  HP CL     M   +K Y WQC +CKSC+ C  +++DD++LFCD CDR
Sbjct: 22  ELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDR 81
Query: 111 GYHNYCI 117
           GYH YC+
Sbjct: 82  GYHMYCL 88

>pdb|2LN0|A Chain A, Structure Of Moz Length = 110

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 32  KPVPESDKC---KACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88
           +P+P    C   K  +R+    E+I C  C    HP+CL    E+   +K   WQC +CK
Sbjct: 1   EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 60
Query: 89  SCVAC-EKAQDDDKMLFCDLCDRGYHNYC 116
           +C +C ++ ++ D MLFCD CDRG+H  C
Sbjct: 61  TCSSCRDQGKNADNMLFCDSCDRGFHMEC 89

>pdb|3V43|A Chain A, Crystal Structure Of Moz Length = 112

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 32  KPVPESDKC---KACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88
           +P+P    C   K  +R+    E+I C  C    HP+CL    E+   +K   WQC +CK
Sbjct: 3   EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62
Query: 89  SCVAC-EKAQDDDKMLFCDLCDRGYHNYC 116
           +C +C ++ ++ D MLFCD CDRG+H  C
Sbjct: 63  TCSSCRDQGKNADNMLFCDSCDRGFHMEC 91

>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3 Homolog Length = 111

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 39  KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
            C  CD      +   C  C ++ H  CLD+    +  +K   WQC +CK C  C+++ +
Sbjct: 9   NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDI---AVTPLKRAGWQCPECKVCQNCKQSGE 65
Query: 99  DDKMLFCDLCDRGYHNYCIG--LDKIPTVG 126
           D KML CD CD+GYH +C+   +  +PT G
Sbjct: 66  DSKMLVCDTCDKGYHTFCLQPVMKSVPTNG 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	5e-17
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	3e-05
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	4e-05
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	1e-16
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	1e-15
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	8e-13
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	3e-11
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	4e-09
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	1e-08
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	6e-08
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	7e-07
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	3e-06
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	6e-06
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	3e-05
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	4e-04
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	9e-05
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	2e-04
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	3e-04
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	4e-04
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	6e-04
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	6e-04

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111

 Score = 70.8 bits (173), Expect = 5e-17
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 35  PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
                C  CD      +   C  C ++ H  CLD+    L       WQC +CK C  C+
Sbjct: 5   SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKR---AGWQCPECKVCQNCK 61

Query: 95  KAQDDDKMLFCDLCDRGYHNYCIG 118
           ++ +D KML CD CD+GYH +C+ 
Sbjct: 62  QSGEDSKMLVCDTCDKGYHTFCLQ 85

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 82  WQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGL 119
              S   +C  C+   D     FC  C + YH  C+ +
Sbjct: 2   SSGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDI 39

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 35  PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVAC 93
           PE   C+ C +     +M+ C  C +  H  CL    + +P      W+C +C+ C++ 
Sbjct: 52  PECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPT---NGWKCKNCRICISG 107

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114

 Score = 70.1 bits (171), Expect = 1e-16
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 43  CDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKM 102
             +     E++ C  C R  HP CL     M   +K Y WQC +CKSC+ C  +++DD++
Sbjct: 14  NKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQL 73

Query: 103 LFCDLCDRGYHNYCIG--LDKIP 123
           LFCD CDRGYH YC+   + + P
Sbjct: 74  LFCDDCDRGYHMYCLNPPVAEPP 96

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112

 Score = 67.4 bits (164), Expect = 1e-15
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 39  KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVAC-EKAQ 97
             K  +R+    E+I C  C    HP+CL    E+   +K   WQC +CK+C +C ++ +
Sbjct: 13  GTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGK 72

Query: 98  DDDKMLFCDLCDRGYHNYCIG--LDKIP 123
           + D MLFCD CDRG+H  C    L ++P
Sbjct: 73  NADNMLFCDSCDRGFHMECCDPPLTRMP 100

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226

 Score = 62.1 bits (150), Expect = 8e-13
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 11/113 (9%)

Query: 16  RQVGITLGFHAGRPSKKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLP 75
           R++   +       +   +   D+    +R      M+      R   P+C     +   
Sbjct: 112 RELYANVVLGDDSLNDCRIIFVDEVFKIERPGEGSPMVDNPMR-RKSGPSCKHCKDD--- 167

Query: 76  HMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVG 126
                +  C  C  C  C   QD DK L CD CD  +H YC+   L  +P+  
Sbjct: 168 ----VNRLCRVCA-CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSED 215

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 55.3 bits (133), Expect = 3e-11
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 80  YDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPT 124
              Q  D   C  C +  +DDK+LFCD CD  YH +C+   L +IP 
Sbjct: 9   SSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPR 55

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77

 Score = 49.5 bits (118), Expect = 4e-09
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 55  CGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHN 114
                 +  P+C     +        +  C  C  C  C   QD DK L CD CD  +H 
Sbjct: 2   PLGSPEFSGPSCKHCKDD-------VNRLCRVCA-CHLCGGRQDPDKQLMCDECDMAFHI 53

Query: 115 YCIG--LDKIPTVG 126
           YC+   L  +P+  
Sbjct: 54  YCLDPPLSSVPSED 67

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70

 Score = 47.9 bits (114), Expect = 1e-08
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 80  YDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVG 126
            +  C  C  C  C   QD DK L CD CD  +H YC+   L  +P+  
Sbjct: 12  VNRLCRVCA-CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSED 59

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77

 Score = 46.3 bits (110), Expect = 6e-08
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 81  DWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIP 123
           + +C  C  C  C    + +  L CD C+  YH YC+   LDK+P
Sbjct: 21  EKKCHSCS-CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVP 64

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51

 Score = 42.7 bits (101), Expect = 7e-07
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 90  CVACEKAQDDDKMLFCDLCDRGYHNYCI--GLDKIP 123
           C  C K  +DDK++ CD C++ +H +C+   L ++P
Sbjct: 3   CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVP 38

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 69  LPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPT 124
           +      HM+    + + C  C    ++Q+ + +LFCD+C+   H  C G+  IP 
Sbjct: 1   MGHHHHHHMQSLIDEDAVCSIC-MDGESQNSNVILFCDMCNLAVHQECYGVPYIPE 55

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75

 Score = 41.0 bits (96), Expect = 6e-06
 Identities = 21/54 (38%), Positives = 26/54 (48%)

Query: 90  CVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKKKKKKK 143
           C  C K  D   M+ CD CD  YH  C+G+   P   + +   K  NK KK KK
Sbjct: 21  CPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDKK 74

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 35  PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
             +  C+ C +    G+++ C +C    H  C     + +P     +W CS C      +
Sbjct: 23  DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPG---EEWSCSLCHVLPDLK 76

Query: 95  KAQDDDK 101
           +   D +
Sbjct: 77  EEDVDLQ 83

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88

 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 3/37 (8%)

Query: 80  YDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYC 116
           +         C  C   Q    ++ C+ C+  +H  C
Sbjct: 18  FGTLDDSATICRVC---QKPGDLVMCNQCEFCFHLDC 51

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88

 Score = 38.1 bits (88), Expect = 9e-05
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 86  DCKSCVAC--EKAQDDDKMLFCDLCDRGYHNYCIGLDKIPT 124
           +   C  C   ++Q+ + +LFCD+C+   H  C G+  IP 
Sbjct: 24  EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPE 64

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
             D C  C +    G+++ C  C R  H  CLD P + +P      W C  C+ 
Sbjct: 7  GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPK---GMWICPRCQD 55

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 5/43 (11%)

Query: 83  QCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIP 123
                  C  C   +   ++L CD C R YH  C+   L  IP
Sbjct: 1   HMIHEDFCSVC---RKSGQLLMCDTCSRVYHLDCLDPPLKTIP 40

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
           D+C  C      GE+I C  C R  H ACL  P   +P      W+CS C      E
Sbjct: 8  EDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSG---TWRCSSCLQATVQE 59

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189

 Score = 37.5 bits (86), Expect = 6e-04
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 6/91 (6%)

Query: 37  SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKA 96
           +  C+ C +    G+++ C +C    H  C     + +P     +W CS C      ++ 
Sbjct: 2   ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGE---EWSCSLCHVLPDLKEE 55

Query: 97  QDDDKMLFCDLCDRGYHNYCIGLDKIPTVGL 127
                +   D              K   V L
Sbjct: 56  DGSLSLDGADSTGVVAKLSPANQRKCERVLL 86

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61

 Score = 35.1 bits (81), Expect = 6e-04
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSC 90
           D C+ C +    GE+I C  C R  H  CLD   E  P      W C  C+  
Sbjct: 11 QDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPE---GKWSCPHCEKE 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	99.95
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	99.94
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	99.94
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	99.71
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	99.68
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	99.65
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	99.63
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	99.58
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	99.53
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	99.49
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	99.47
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	99.46
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	99.45
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	99.44
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	99.43
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	99.41
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	99.4
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	99.4
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	99.39
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	99.38
2yt5_A	66	Metal-response element-binding transcription facto	99.38
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	99.38
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	99.37
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	99.36
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	99.36
1weu_A	91	Inhibitor of growth family, member 4; structural g	99.31
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	99.28
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	99.26
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	99.26
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	99.25
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	99.25
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	99.24
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	99.21
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	99.2
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	99.19
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	99.19
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	99.19
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	99.19
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	99.16
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	99.16
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	99.13
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	99.1
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	99.09
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	99.08
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	99.07
2yt5_A	66	Metal-response element-binding transcription facto	99.07
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	99.07
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	99.06
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	99.05
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	99.04
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	99.02
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	99.0
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	98.99
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	98.97
1we9_A	64	PHD finger family protein; structural genomics, PH	98.94
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	98.93
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	98.93
1wew_A	78	DNA-binding family protein; structural genomics, P	98.92
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	98.92
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	98.92
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	98.88
1wem_A	76	Death associated transcription factor 1; structura	98.88
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	98.87
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	98.86
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	98.86
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	98.85
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	98.84
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	98.84
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	98.84
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	98.81
1wee_A	72	PHD finger family protein; structural genomics, PH	98.8
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	98.76
1weu_A	91	Inhibitor of growth family, member 4; structural g	98.74
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	98.69
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	98.67
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	98.61
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	98.49
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	98.49
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	98.47
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	98.46
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	98.44
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	98.44
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	98.41
1we9_A	64	PHD finger family protein; structural genomics, PH	98.39
3kv5_D	488	JMJC domain-containing histone demethylation prote	98.37
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	98.27
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	98.22
1wee_A	72	PHD finger family protein; structural genomics, PH	98.2
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	98.17
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	98.17
1wew_A	78	DNA-binding family protein; structural genomics, P	98.14
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	98.14
1wem_A	76	Death associated transcription factor 1; structura	98.14
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	98.07
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	98.07
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	98.04
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	98.03
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	97.99
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	97.95
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	97.87
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	97.8
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	97.79
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	97.54
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	97.42
3kv5_D	488	JMJC domain-containing histone demethylation prote	97.01
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	96.84
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	96.78
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	96.58
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	96.26
3rsn_A	177	SET1/ASH2 histone methyltransferase complex subun;	96.21
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	95.61
2ect_A	78	Ring finger protein 126; metal binding protein, st	95.58
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	95.28
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	95.28
3rsn_A	177	SET1/ASH2 histone methyltransferase complex subun;	95.22
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	94.91
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	94.47
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	94.32
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	94.13
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	93.85
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	93.75
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	93.55
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	93.39
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	93.06
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	92.9
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	92.89
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	92.79
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	92.35
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	92.01
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	91.83
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	91.54
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	91.23
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	91.1
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	90.96
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	90.88
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	90.81
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	90.8
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	90.63
2ect_A	78	Ring finger protein 126; metal binding protein, st	90.6
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	90.51
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	90.13
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	90.13
1weq_A	85	PHD finger protein 7; structural genomics, PHD dom	89.97
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	89.77
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	89.77
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	89.51
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	89.13
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	88.91
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	88.86
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	88.55
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	88.14
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	87.96
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	87.8
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	87.64
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	87.15
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	86.83
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	85.76
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	85.36
2lq6_A	87	Bromodomain-containing protein 1; PHD finger, meta	84.13
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	83.93
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	83.18
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	83.13
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	83.0
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	81.69
2lq6_A	87	Bromodomain-containing protein 1; PHD finger, meta	81.13
3nw0_A	238	Non-structural maintenance of chromosomes element	81.0
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	80.83
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	80.73
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	80.48

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=99.95  E-value=4.9e-28  Score=167.86  Aligned_cols=99  Identities=32%  Similarity=0.780  Sum_probs=89.8

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCccccccccCCCceecCCccccccc
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHN  114 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~~~yH~  114 (145)
                      .++++|.+|++.|+.++||.|+.|+++||+.||+++...   ++.+.|+|++|++|.+|++.+++..||+||.|+++||+
T Consensus         5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~---~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~   81 (111)
T 2ysm_A            5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP---LKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHT   81 (111)
T ss_dssp             CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCT---TTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEG
T ss_pred             CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccc---ccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhH
Confidence            478999999999987888999999999999999997643   34679999999999999998888899999999999999


Q ss_pred             cccc--CCCCCCCCccccccccch
Q psy17723        115 YCIG--LDKIPTVGLVFTLKKKKN  136 (145)
Q Consensus       115 ~Cl~--l~~~p~~~W~C~~C~~~~  136 (145)
                      +||+  |..+|++.|+|+.|...+
T Consensus        82 ~Cl~ppl~~~P~g~W~C~~C~~c~  105 (111)
T 2ysm_A           82 FCLQPVMKSVPTNGWKCKNCRICI  105 (111)
T ss_dssp             GGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred             HhcCCccccCCCCCcCCcCCcCcC
Confidence            9998  889999999999997654

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=99.94  E-value=1.2e-28  Score=171.96  Aligned_cols=103  Identities=38%  Similarity=0.856  Sum_probs=89.5

Q ss_pred             ccccccccccC-------CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCccccccccCCCceecCCcc
Q psy17723         37 SDKCKACDRDT-------SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCD  109 (145)
Q Consensus        37 ~~~C~~C~~~~-------~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~  109 (145)
                      +++|.+|.+++       +.++||.|++|+++||+.||++...+...++.+.|+|++|++|.+|+..++++.||+||.|+
T Consensus         1 ~~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~   80 (114)
T 2kwj_A            1 GSYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCD   80 (114)
T ss_dssp             CCCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSSSC
T ss_pred             CCcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCCCC
Confidence            36899998764       34799999999999999999987554445567899999999999999988889999999999


Q ss_pred             ccccccccc--CCCCCCCCccccccccchhhh
Q psy17723        110 RGYHNYCIG--LDKIPTVGLVFTLKKKKNKKK  139 (145)
Q Consensus       110 ~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~~  139 (145)
                      ++||++||+  |..+|++.|+|+.|....+++
T Consensus        81 ~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k  112 (114)
T 2kwj_A           81 RGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK  112 (114)
T ss_dssp             CEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred             ccccccccCCCccCCCCCCeECccccchhhcc
Confidence            999999998  899999999999998765443

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=99.94  E-value=8.4e-28  Score=167.14  Aligned_cols=101  Identities=33%  Similarity=0.791  Sum_probs=86.5

Q ss_pred             ccccccccccccC------CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCccccccc-cCCCceecCC
Q psy17723         35 PESDKCKACDRDT------SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQ-DDDKMLFCDL  107 (145)
Q Consensus        35 ~~~~~C~~C~~~~------~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~-~~~~ll~Cd~  107 (145)
                      .+..+|.+|.+.+      ..++||.|++|++.||++||++...+...++.+.|+|++|++|.+|+..+ +++.||+||.
T Consensus         3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~   82 (112)
T 3v43_A            3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDS   82 (112)
T ss_dssp             CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTT
T ss_pred             ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEcCC
Confidence            4578999998763      45799999999999999999875444344567899999999999999864 4578999999


Q ss_pred             ccccccccccc--CCCCCCCCccccccccc
Q psy17723        108 CDRGYHNYCIG--LDKIPTVGLVFTLKKKK  135 (145)
Q Consensus       108 C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~  135 (145)
                      |+++||++||+  |.++|++.|+|+.|+.+
T Consensus        83 C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~k  112 (112)
T 3v43_A           83 CDRGFHMECCDPPLTRMPKGMWICQICRPR  112 (112)
T ss_dssp             TCCEECGGGCSSCCSSCCSSCCCCTTTSCC
T ss_pred             CCCeeecccCCCCCCCCCCCCeECCCCCCc
Confidence            99999999996  89999999999999753

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=99.71  E-value=9.8e-18  Score=115.27  Aligned_cols=85  Identities=24%  Similarity=0.560  Sum_probs=73.5

Q ss_pred             CCCccccccccccccCCCCCcEecC--CCCCCccccCCCCCCCCCCcCCCCcccccccccCccccccccCCCceecCCcc
Q psy17723         32 KPVPESDKCKACDRDTSAGEMIQCG--KCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCD  109 (145)
Q Consensus        32 ~~~~~~~~C~~C~~~~~~~~ll~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~  109 (145)
                      ....+++.|.+|+++|   +||.|+  .|.++||+.||++     ..++.+.|+|+.| .|.+|++..    .+.|..|+
T Consensus        10 ~~~~~~~~C~~C~~~G---~ll~CD~~~Cp~~fH~~Cl~L-----~~~P~g~W~Cp~c-~C~~C~k~~----~~~C~~Cp   76 (107)
T 4gne_A           10 PKQMHEDYCFQCGDGG---ELVMCDKKDCPKAYHLLCLNL-----TQPPYGKWECPWH-QCDECSSAA----VSFCEFCP   76 (107)
T ss_dssp             CCCSSCSSCTTTCCCS---EEEECCSTTCCCEECTGGGTC-----SSCCSSCCCCGGG-BCTTTCSBC----CEECSSSS
T ss_pred             CcCCCCCCCCcCCCCC---cEeEECCCCCCcccccccCcC-----CcCCCCCEECCCC-CCCcCCCCC----CcCcCCCC
Confidence            3456789999999887   999999  8999999999984     4556789999999 799999853    38899999


Q ss_pred             ccccccccc--CCCCCCCCccc
Q psy17723        110 RGYHNYCIG--LDKIPTVGLVF  129 (145)
Q Consensus       110 ~~yH~~Cl~--l~~~p~~~W~C  129 (145)
                      ++||..|++  |...+...|+|
T Consensus        77 ~sfC~~c~~g~l~~~~~~~~~c   98 (107)
T 4gne_A           77 HSFCKDHEKGALVPSALEGRLC   98 (107)
T ss_dssp             CEECTTTCTTSCEECTTTTCEE
T ss_pred             cchhhhccCCcceecCCCCcee
Confidence            999999997  77778888987

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=99.68  E-value=1.8e-17  Score=105.99  Aligned_cols=56  Identities=32%  Similarity=0.716  Sum_probs=52.3

Q ss_pred             CCcccccccccCccccccccCCCceecCCccccccccccc--CCCCCCC-Cccccccccc
Q psy17723         79 LYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTV-GLVFTLKKKK  135 (145)
Q Consensus        79 ~~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~-~W~C~~C~~~  135 (145)
                      +..|+|++| .|.+|++.++++.||+||.|+++||++||+  |+.+|+| .|+|+.|..+
T Consensus        11 ~~~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~   69 (70)
T 3asl_A           11 DVNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND   69 (70)
T ss_dssp             CTTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred             CCCeECCCC-CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence            358999999 999999988889999999999999999998  8999999 9999999864

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.1e-16  Score=104.08  Aligned_cols=54  Identities=33%  Similarity=0.756  Sum_probs=50.9

Q ss_pred             CcccccccccCccccccccCCCceecCCccccccccccc--CCCCCCC-Ccccccccc
Q psy17723         80 YDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTV-GLVFTLKKK  134 (145)
Q Consensus        80 ~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~-~W~C~~C~~  134 (145)
                      ..|+|++| .|.+|++.++++.||+||.|+++||++||+  |..+|+| .|+|+.|..
T Consensus        20 ~~w~C~~c-~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~   76 (77)
T 2e6s_A           20 PEKKCHSC-SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT   76 (77)
T ss_dssp             SSSCCSSS-SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred             CCeECCCC-CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence            47999999 999999988899999999999999999998  8999999 999999975

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=99.63  E-value=1.3e-16  Score=103.61  Aligned_cols=54  Identities=33%  Similarity=0.770  Sum_probs=50.7

Q ss_pred             CcccccccccCccccccccCCCceecCCccccccccccc--CCCCCCCC-cccccccc
Q psy17723         80 YDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVG-LVFTLKKK  134 (145)
Q Consensus        80 ~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~-W~C~~C~~  134 (145)
                      ..|+|++| .|.+|++.++++.||+||.|+++||++||+  |..+|++. |+|+.|+.
T Consensus        20 ~~W~C~~C-~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~   76 (77)
T 3shb_A           20 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN   76 (77)
T ss_dssp             TTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred             CCCCCCCC-cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence            58999999 999999998889999999999999999998  89999998 99999975

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=3.9e-16  Score=104.65  Aligned_cols=60  Identities=33%  Similarity=0.555  Sum_probs=54.7

Q ss_pred             CCcccccccccCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchhh
Q psy17723         79 LYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKK  138 (145)
Q Consensus        79 ~~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~  138 (145)
                      ...|.+.+..+|.||+..++++.||+||.|+++||++||+  |..+|++.|+|+.|...+.+
T Consensus         8 ~s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~~   69 (92)
T 2e6r_A            8 HSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECK   69 (92)
T ss_dssp             CCCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHHS
T ss_pred             CchhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcccc
Confidence            4589999999999999988788999999999999999998  88999999999999876543

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.53  E-value=2.9e-15  Score=89.81  Aligned_cols=46  Identities=28%  Similarity=0.769  Sum_probs=42.6

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCcccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKK  134 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~  134 (145)
                      +|.+|++.++++.||+||.|+++||++|++  ++++|+++|+|+.|..
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            588999988888999999999999999995  8899999999999975

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=99.49  E-value=7.3e-15  Score=97.92  Aligned_cols=54  Identities=24%  Similarity=0.450  Sum_probs=43.9

Q ss_pred             cCccccccccCCCceecCCcc---cccccccccCCCCCCCCccccc-cccchhhhhhccC
Q psy17723         89 SCVACEKAQDDDKMLFCDLCD---RGYHNYCIGLDKIPTVGLVFTL-KKKKNKKKKKKKK  144 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~---~~yH~~Cl~l~~~p~~~W~C~~-C~~~~~~~~~~~~  144 (145)
                      +| +|++.++ +.||.||.|+   .|||+.|++|+.+|.+.|+|+. |....+.++|+||
T Consensus        28 yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~~~k~~~k~~~   85 (90)
T 2jmi_A           28 YC-FCRNVSY-GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEIANQRSKSKR   85 (90)
T ss_dssp             CS-TTTCCCS-SSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHHHHHHSSCC--
T ss_pred             EE-EeCCCCC-CCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcchhhccccccc
Confidence            66 7887654 4799999977   9999999999999999999999 9977665555554

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=99.47  E-value=9.5e-15  Score=94.16  Aligned_cols=53  Identities=34%  Similarity=0.560  Sum_probs=43.4

Q ss_pred             cCccccccccCCCceecCCcccccccccccCCC--CCCCCccccccccchhhhhh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDK--IPTVGLVFTLKKKKNKKKKK  141 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~~--~p~~~W~C~~C~~~~~~~~~  141 (145)
                      +|.+|++.++++.||.||.|+.|||+.|++++.  +|.+.|+|+.|..+.+|+||
T Consensus        20 ~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~kk   74 (75)
T 2k16_A           20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDKK   74 (75)
T ss_dssp             CBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSCCC
T ss_pred             CCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhccc
Confidence            667889887777899999999999999999544  45689999999877655544

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=99.46  E-value=1e-14  Score=93.33  Aligned_cols=50  Identities=24%  Similarity=0.618  Sum_probs=44.0

Q ss_pred             cCccccccc--cCCCceecCCcccccccccccCCCCCCCCccccccccchhh
Q psy17723         89 SCVACEKAQ--DDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKK  138 (145)
Q Consensus        89 ~C~vC~~~~--~~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~~~  138 (145)
                      +|.||++.+  +++.||+||.|+++||++|++++.+|+|+|+|+.|...+.+
T Consensus        18 ~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~~~~   69 (71)
T 2ku3_A           18 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR   69 (71)
T ss_dssp             SCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCcCcc
Confidence            788998764  67899999999999999999988899999999999875543

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=99.45  E-value=4.4e-14  Score=87.80  Aligned_cols=47  Identities=28%  Similarity=0.584  Sum_probs=41.1

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchhh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKK  138 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~  138 (145)
                      +|.+|+.   ++.||+||.|+++||++||+  |+.+|++.|+|+.|..+..|
T Consensus        11 ~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k   59 (61)
T 1mm2_A           11 FCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK   59 (61)
T ss_dssp             SCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred             cCCCCCC---CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence            6778886   46899999999999999998  88999999999999876544

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=99.44  E-value=5.1e-14  Score=107.90  Aligned_cols=56  Identities=32%  Similarity=0.716  Sum_probs=47.0

Q ss_pred             CCcccccccccCccccccccCCCceecCCccccccccccc--CCCCCCC-Cccccccccc
Q psy17723         79 LYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTV-GLVFTLKKKK  135 (145)
Q Consensus        79 ~~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~-~W~C~~C~~~  135 (145)
                      ...|+|..| .|.+|+..++++.||+||.|+++||++||+  |..+|+| .|+|+.|..+
T Consensus       167 ~~~w~C~~c-~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~  225 (226)
T 3ask_A          167 DVNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND  225 (226)
T ss_dssp             CTTSCCTTT-SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred             CcCEecCCC-CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence            347999999 999999988889999999999999999998  8999999 9999999754

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=99.43  E-value=4.3e-14  Score=89.15  Aligned_cols=46  Identities=22%  Similarity=0.383  Sum_probs=40.4

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~  137 (145)
                      .|.+|++   ++.||+||.|+++||++||+  |..+|++.|+|+.|+.+..
T Consensus        14 ~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~   61 (66)
T 2lri_C           14 RCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT   61 (66)
T ss_dssp             CCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred             CcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence            5778875   56799999999999999996  8899999999999987644

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=99.41  E-value=4.9e-14  Score=88.84  Aligned_cols=48  Identities=23%  Similarity=0.598  Sum_probs=41.1

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchhhh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKKK  139 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~~  139 (145)
                      +|.||+.   ++.||+||.|+++||++||+  |+.+|++.|+|+.|...+.++
T Consensus        10 ~C~vC~~---~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~~   59 (66)
T 1xwh_A           10 ECAVCRD---GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE   59 (66)
T ss_dssp             SBSSSSC---CSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCCC
T ss_pred             CCccCCC---CCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccccc
Confidence            5668876   46899999999999999998  889999999999998765443

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=99.40  E-value=6.7e-14  Score=86.60  Aligned_cols=48  Identities=33%  Similarity=0.666  Sum_probs=42.0

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchhhh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKKK  139 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~~  139 (145)
                      +|.+|+.   .+.||.||.|+++||++|++  ++.+|++.|+|+.|.....++
T Consensus         7 ~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~   56 (60)
T 2puy_A            7 FCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK   56 (60)
T ss_dssp             SCTTTCC---CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred             CCcCCCC---CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence            6778887   46899999999999999998  889999999999998766544

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=99.40  E-value=1.4e-13  Score=88.05  Aligned_cols=49  Identities=22%  Similarity=0.490  Sum_probs=42.0

Q ss_pred             cCccccccccCCCceecCC--cc-cccccccccCCCCCCCCccccccccchhhh
Q psy17723         89 SCVACEKAQDDDKMLFCDL--CD-RGYHNYCIGLDKIPTVGLVFTLKKKKNKKK  139 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~--C~-~~yH~~Cl~l~~~p~~~W~C~~C~~~~~~~  139 (145)
                      +| +|++..+ +.||.||.  |+ .|||+.|++|+.+|.+.|+|+.|...++++
T Consensus        18 ~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~k~   69 (71)
T 1wen_A           18 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPS   69 (71)
T ss_dssp             CS-TTCCCSC-SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSSSC
T ss_pred             EE-ECCCCCC-CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcccccc
Confidence            67 7888654 68999999  77 799999999999999999999998766554

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=6.7e-14  Score=89.25  Aligned_cols=54  Identities=24%  Similarity=0.453  Sum_probs=45.4

Q ss_pred             cCccccccccCCCceecCCcc---cccccccccCCCCCCCCccccccccchhhhhhccC
Q psy17723         89 SCVACEKAQDDDKMLFCDLCD---RGYHNYCIGLDKIPTVGLVFTLKKKKNKKKKKKKK  144 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~---~~yH~~Cl~l~~~p~~~W~C~~C~~~~~~~~~~~~  144 (145)
                      +| +|++.++ +.||.||.|+   .|||+.|++|+..|.+.|+|+.|....+++++++|
T Consensus         8 yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~k~~~~~~   64 (70)
T 1x4i_A            8 YC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRRGSRHK   64 (70)
T ss_dssp             CS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHHHHHHTTCC
T ss_pred             EE-EcCCCCC-CCEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccccccccccc
Confidence            56 5887654 5899999986   89999999999999999999999988776666554

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=99.38  E-value=9e-14  Score=92.38  Aligned_cols=55  Identities=20%  Similarity=0.451  Sum_probs=45.0

Q ss_pred             ccCcccccccc--CCCceecCCccccccccccc--CC----CCCCCCccccccccchhhhhhc
Q psy17723         88 KSCVACEKAQD--DDKMLFCDLCDRGYHNYCIG--LD----KIPTVGLVFTLKKKKNKKKKKK  142 (145)
Q Consensus        88 ~~C~vC~~~~~--~~~ll~Cd~C~~~yH~~Cl~--l~----~~p~~~W~C~~C~~~~~~~~~~  142 (145)
                      .+|.||+..++  ++.||+||.|+++||++||+  |.    .+|++.|+|+.|....+++.++
T Consensus        17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~   79 (88)
T 1wev_A           17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQK   79 (88)
T ss_dssp             CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTC
T ss_pred             CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhccc
Confidence            37889997654  47899999999999999998  54    3899999999999876655443

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=99.38  E-value=6.2e-14  Score=88.15  Aligned_cols=52  Identities=25%  Similarity=0.627  Sum_probs=42.6

Q ss_pred             cCcccccc--ccCCCceecCCccccccccccc--CCC--C-CCCCccccccccchhhhh
Q psy17723         89 SCVACEKA--QDDDKMLFCDLCDRGYHNYCIG--LDK--I-PTVGLVFTLKKKKNKKKK  140 (145)
Q Consensus        89 ~C~vC~~~--~~~~~ll~Cd~C~~~yH~~Cl~--l~~--~-p~~~W~C~~C~~~~~~~~  140 (145)
                      +|.||+..  .+++.||+||.|+++||++|++  ++.  + |++.|+|+.|...+..||
T Consensus         8 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~kr   66 (66)
T 2yt5_A            8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR   66 (66)
T ss_dssp             CBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSCCC
T ss_pred             CCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccccCC
Confidence            78899875  3458999999999999999998  444  3 899999999987766554

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=99.38  E-value=2.9e-13  Score=84.07  Aligned_cols=45  Identities=27%  Similarity=0.719  Sum_probs=39.7

Q ss_pred             ccCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccc
Q psy17723         88 KSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        88 ~~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~  135 (145)
                      .+|.+|++   .+.||+||.|+++||++||+  ++.+|++.|+|+.|..+
T Consensus        12 ~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A           12 DYCEVCQQ---GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             SSCTTTSC---CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCccCCC---CCcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            37778887   46899999999999999998  57899999999999865

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.37  E-value=5.1e-13  Score=88.55  Aligned_cols=55  Identities=18%  Similarity=0.405  Sum_probs=47.0

Q ss_pred             CCcccccccccCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccch
Q psy17723         79 LYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKN  136 (145)
Q Consensus        79 ~~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~  136 (145)
                      ...|.-.+-.+|.+|+..   +.||+||.|+++||++||+  |+.+|+++|+|+.|....
T Consensus        17 ~~~~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~   73 (88)
T 1fp0_A           17 EFGTLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   73 (88)
T ss_dssp             CCCSSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             cccccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence            346667777789999974   5899999999999999994  899999999999998653

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=99.36  E-value=6.9e-14  Score=92.94  Aligned_cols=49  Identities=24%  Similarity=0.612  Sum_probs=43.2

Q ss_pred             cCccccccc--cCCCceecCCcccccccccccCCCCCCCCccccccccchh
Q psy17723         89 SCVACEKAQ--DDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~--~~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~~  137 (145)
                      +|.||+..+  +++.||+||.|+.+||++|++++.+|+|.|+|+.|.....
T Consensus        27 ~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~   77 (88)
T 2l43_A           27 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA   77 (88)
T ss_dssp             CCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred             cCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence            778999765  5679999999999999999998889999999999987544

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=2.4e-13  Score=83.01  Aligned_cols=43  Identities=33%  Similarity=0.716  Sum_probs=38.4

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCcccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKK  134 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~  134 (145)
                      +|.+|+.   .+.||.||.|+++||++||+  |+.+|++.|+|+.|..
T Consensus        11 ~C~vC~~---~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A           11 FCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             SCSSSCC---SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCccCCC---CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            6778887   36899999999999999998  8899999999999964

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=99.31  E-value=8.8e-13  Score=87.99  Aligned_cols=49  Identities=22%  Similarity=0.490  Sum_probs=41.8

Q ss_pred             cCccccccccCCCceecCC--cc-cccccccccCCCCCCCCccccccccchhhh
Q psy17723         89 SCVACEKAQDDDKMLFCDL--CD-RGYHNYCIGLDKIPTVGLVFTLKKKKNKKK  139 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~--C~-~~yH~~Cl~l~~~p~~~W~C~~C~~~~~~~  139 (145)
                      +| +|++..+ +.||.||.  |. .|||+.|++|+.+|.+.|+|+.|...++++
T Consensus        38 yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~k~   89 (91)
T 1weu_A           38 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPS   89 (91)
T ss_dssp             CS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCSSS
T ss_pred             EE-ECCCCCC-CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCCcC
Confidence            67 8888664 68999999  66 799999999999999999999998765544

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=99.28  E-value=8.6e-13  Score=81.66  Aligned_cols=45  Identities=24%  Similarity=0.538  Sum_probs=38.9

Q ss_pred             cCccccccccCCCceecCC--cc-cccccccccCCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDL--CD-RGYHNYCIGLDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~--C~-~~yH~~Cl~l~~~p~~~W~C~~C~~~  135 (145)
                      +| +|++.++ +.||.||.  |. .|||+.|++|+.+|.+.|+|+.|..+
T Consensus        12 ~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~~   59 (60)
T 2vnf_A           12 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE   59 (60)
T ss_dssp             ET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC-
T ss_pred             EE-ECCCcCC-CCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccCc
Confidence            67 8998764 68999999  55 89999999999999999999999753

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=99.26  E-value=1.2e-12  Score=80.75  Aligned_cols=45  Identities=22%  Similarity=0.470  Sum_probs=39.5

Q ss_pred             cCccccccccCCCceecCC--cc-cccccccccCCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDL--CD-RGYHNYCIGLDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~--C~-~~yH~~Cl~l~~~p~~~W~C~~C~~~  135 (145)
                      +| +|++.++ +.||.||.  |+ .|||+.|++|+.+|.+.|+|+.|..+
T Consensus        11 yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~~   58 (59)
T 3c6w_A           11 YC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQE   58 (59)
T ss_dssp             ET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHCC
T ss_pred             EE-ECCCCCC-CCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccCc
Confidence            67 8998764 68999999  76 79999999999999999999999754

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=99.26  E-value=1.2e-12  Score=81.53  Aligned_cols=45  Identities=20%  Similarity=0.367  Sum_probs=39.2

Q ss_pred             cCccccccccCCCceecCCcc---cccccccccCCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCD---RGYHNYCIGLDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~---~~yH~~Cl~l~~~p~~~W~C~~C~~~  135 (145)
                      +| +|++..+ +.||.||.|+   .|||+.|++|+.+|.+.|+|+.|..+
T Consensus        13 yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~   60 (62)
T 2g6q_A           13 YC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD   60 (62)
T ss_dssp             ET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred             EE-ECCCCCC-CCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence            67 8998754 5899999955   99999999999999999999999764

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=99.25  E-value=7.4e-12  Score=77.63  Aligned_cols=47  Identities=26%  Similarity=0.729  Sum_probs=41.3

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      .+++.|.+|+..+   +||.|+.|.++||+.|+.+++.   .++.+.|+|+.|
T Consensus         7 ~~~~~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~---~~p~g~W~C~~C   53 (61)
T 1mm2_A            7 HHMEFCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLP---EIPNGEWLCPRC   53 (61)
T ss_dssp             SSCSSCTTTCCCS---SCBCCSSSCCCBCSSSSSSCCS---SCCSSCCCCTTT
T ss_pred             CCCCcCCCCCCCC---CEEEcCCCCHHHcccccCCCcC---cCCCCccCChhh
Confidence            4688999999887   9999999999999999999764   455789999988

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=4.5e-12  Score=77.24  Aligned_cols=49  Identities=29%  Similarity=0.759  Sum_probs=42.2

Q ss_pred             CccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         34 VPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        34 ~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ..+++.|.+|+..+   .||.|+.|.++||+.|+++++.   .++.+.|+|+.|.
T Consensus         6 ~~~~~~C~vC~~~g---~ll~Cd~C~~~~H~~Cl~ppl~---~~p~g~W~C~~C~   54 (56)
T 2yql_A            6 SGHEDFCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLK---TIPKGMWICPRCQ   54 (56)
T ss_dssp             CSSCCSCSSSCCSS---CCEECSSSSCEECSSSSSSCCC---SCCCSSCCCHHHH
T ss_pred             CCCCCCCccCCCCC---eEEEcCCCCcceECccCCCCcC---CCCCCceEChhhh
Confidence            45688999999987   9999999999999999999874   3456899999873

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.24  E-value=3.3e-12  Score=76.34  Aligned_cols=47  Identities=28%  Similarity=0.758  Sum_probs=41.2

Q ss_pred             ccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        39 ~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      .|.+|+..++.+.||.|+.|.++||+.|+++++.   .++.+.|+|+.|.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~---~~P~g~W~C~~C~   48 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALY---EVPDGEWQCPACQ   48 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC---SCCSSCCSCTTTS
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcC---CCCCCcEECcCcc
Confidence            6999999988889999999999999999998764   4457899999884

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=99.21  E-value=6.6e-12  Score=79.00  Aligned_cols=48  Identities=35%  Similarity=0.827  Sum_probs=41.7

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      .+++.|.+|+..+   +||.|+.|.++||+.|+++++.   .++.+.|+|+.|.
T Consensus         6 ~~~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~ppl~---~~P~g~W~C~~C~   53 (66)
T 1xwh_A            6 KNEDECAVCRDGG---ELICCDGCPRAFHLACLSPPLR---EIPSGTWRCSSCL   53 (66)
T ss_dssp             SCCCSBSSSSCCS---SCEECSSCCCEECTTTSSSCCS---SCCSSCCCCHHHH
T ss_pred             CCCCCCccCCCCC---CEEEcCCCChhhcccccCCCcC---cCCCCCeECcccc
Confidence            4688999999988   9999999999999999999774   3456899999873

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.20  E-value=2.7e-11  Score=80.22  Aligned_cols=53  Identities=19%  Similarity=0.535  Sum_probs=45.0

Q ss_pred             CccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCcc
Q psy17723         34 VPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVA   92 (145)
Q Consensus        34 ~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~v   92 (145)
                      ..+++.|.+|+.++   +||.|+.|.+.||+.|+.|++.   .++.+.|+|+.|.....
T Consensus        22 d~n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~PpL~---~~P~g~W~C~~C~~~~~   74 (88)
T 1fp0_A           22 DDSATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQ---DVPGEEWSCSLCHVLPD   74 (88)
T ss_dssp             SSSSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCC---CCCSSSCCCCSCCCCCS
T ss_pred             CCCCCcCcCcCCCC---CEEECCCCCCceecccCCCCCC---CCcCCCcCCccccCCCc
Confidence            35788999999988   8999999999999999999874   44578999998865543

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-11  Score=82.90  Aligned_cols=53  Identities=25%  Similarity=0.577  Sum_probs=45.4

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ...++..|.+|+..++.+.||.|+.|.++||+.||+|++.   .++.+.|+|+.|.
T Consensus        12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~---~~P~g~W~C~~C~   64 (92)
T 2e6r_A           12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLP---EIPRGIWRCPKCI   64 (92)
T ss_dssp             CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCS---SCCSSCCCCHHHH
T ss_pred             hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcc---cCCCCCcCCccCc
Confidence            4456789999999987788999999999999999999874   4557899999883

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=99.19  E-value=7e-12  Score=84.72  Aligned_cols=47  Identities=30%  Similarity=0.625  Sum_probs=39.0

Q ss_pred             ccCccccccccCCCceecCCcccccccccccC--CCCCCCCccccccccch
Q psy17723         88 KSCVACEKAQDDDKMLFCDLCDRGYHNYCIGL--DKIPTVGLVFTLKKKKN  136 (145)
Q Consensus        88 ~~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l--~~~p~~~W~C~~C~~~~  136 (145)
                      +.| +|+..++++.||.|+.|++|||+.|+++  ..+| ..|+|+.|..+.
T Consensus        29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~~   77 (98)
T 2lv9_A           29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIP-DTYLCERCQPRN   77 (98)
T ss_dssp             CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCC-SSBCCTTTSSSC
T ss_pred             EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCC-CCEECCCCcCCC
Confidence            456 7888777889999999999999999984  4455 479999998654

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=99.19  E-value=8.3e-12  Score=78.61  Aligned_cols=46  Identities=22%  Similarity=0.598  Sum_probs=40.0

Q ss_pred             cccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      +...|.+|++.+   +||.|+.|.+.||++|+++++.   .++.+.|+|+.|
T Consensus        11 ~~~~C~vC~~~~---~ll~Cd~C~~~~H~~Cl~P~l~---~~P~g~W~C~~C   56 (66)
T 2lri_C           11 PGARCGVCGDGT---DVLRCTHCAAAFHWRCHFPAGT---SRPGTGLRCRSC   56 (66)
T ss_dssp             TTCCCTTTSCCT---TCEECSSSCCEECHHHHCTTTC---CCCSSSCCCTTT
T ss_pred             CCCCcCCCCCCC---eEEECCCCCCceecccCCCccC---cCCCCCEECccc
Confidence            466899999887   8999999999999999999874   455789999988

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=99.19  E-value=8.7e-12  Score=76.98  Aligned_cols=47  Identities=30%  Similarity=0.781  Sum_probs=41.1

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      .+++.|.+|+..+   .||.|+.|.++||+.|+++++.   .++.+.|+|+.|
T Consensus         3 ~~~~~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~---~~p~g~W~C~~C   49 (60)
T 2puy_A            3 IHEDFCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLK---TIPKGMWICPRC   49 (60)
T ss_dssp             CCCSSCTTTCCCS---SCEECSSSSCEECGGGSSSCCS---SCCCSCCCCHHH
T ss_pred             CCCCCCcCCCCCC---cEEEcCCCCcCEECCcCCCCcC---CCCCCceEChhc
Confidence            3688999999987   9999999999999999999874   345689999987

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=99.16  E-value=1.1e-11  Score=76.91  Aligned_cols=49  Identities=33%  Similarity=0.775  Sum_probs=42.0

Q ss_pred             CccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         34 VPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        34 ~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ..+++.|.+|+..+   +||.|+.|.++||+.|+++++.   .++.+.|+|+.|.
T Consensus         8 ~~~~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~p~l~---~~p~g~W~C~~C~   56 (61)
T 2l5u_A            8 TDHQDYCEVCQQGG---EIILCDTCPRAYHMVCLDPDME---KAPEGKWSCPHCE   56 (61)
T ss_dssp             SCCCSSCTTTSCCS---SEEECSSSSCEEEHHHHCTTCC---SCCCSSCCCTTGG
T ss_pred             CCCCCCCccCCCCC---cEEECCCCChhhhhhccCCCCC---CCCCCceECcccc
Confidence            34678999999987   9999999999999999999864   3457899999884

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=99.16  E-value=1.3e-11  Score=84.62  Aligned_cols=43  Identities=23%  Similarity=0.617  Sum_probs=38.5

Q ss_pred             cCccccccccCCCceecC--CcccccccccccCCCCCCCCcccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCD--LCDRGYHNYCIGLDKIPTVGLVFTLKKK  134 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd--~C~~~yH~~Cl~l~~~p~~~W~C~~C~~  134 (145)
                      +|.+|+.   ++.||.||  .|+++||+.||+|..+|+|.|+||.|.=
T Consensus        17 ~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C   61 (107)
T 4gne_A           17 YCFQCGD---GGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQC   61 (107)
T ss_dssp             SCTTTCC---CSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBC
T ss_pred             CCCcCCC---CCcEeEECCCCCCcccccccCcCCcCCCCCEECCCCCC
Confidence            6778885   57899999  8999999999999999999999998763

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=4.4e-11  Score=77.44  Aligned_cols=49  Identities=27%  Similarity=0.657  Sum_probs=41.9

Q ss_pred             ccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCC-cccccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLY-DWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~-~W~C~~C~   88 (145)
                      +..|.+|+..++.+.||.|+.|.+.||++||+|++.   .++.+ .|+|+.|.
T Consensus        26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~---~~P~g~~W~C~~C~   75 (77)
T 2e6s_A           26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLD---KVPEEEYWYCPSCK   75 (77)
T ss_dssp             SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCS---SCCCSSCCCCTTTC
T ss_pred             CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCcc---CCCCCCCcCCcCcc
Confidence            458999998777789999999999999999999874   34466 99999884

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=99.10  E-value=4.2e-11  Score=89.02  Aligned_cols=46  Identities=24%  Similarity=0.606  Sum_probs=40.4

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~  137 (145)
                      +|.+|+.   ++.||.||.|+++||.+|++  +..+|+|.|+|+.|+....
T Consensus         6 ~C~~C~~---~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~   53 (184)
T 3o36_A            6 WCAVCQN---GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK   53 (184)
T ss_dssp             SCTTTCC---CSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred             ccccCCC---CCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence            6788886   46799999999999999995  8899999999999997653

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=99.09  E-value=5e-11  Score=75.84  Aligned_cols=47  Identities=26%  Similarity=0.750  Sum_probs=39.9

Q ss_pred             ccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCC-cccccccc
Q psy17723         39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLY-DWQCSDCK   88 (145)
Q Consensus        39 ~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~-~W~C~~C~   88 (145)
                      .|.+|+..++.+.||.|+.|.++||++||++++.   .++.+ .|+|+.|.
T Consensus        20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~---~~P~g~~W~C~~C~   67 (70)
T 3asl_A           20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS---SVPSEDEWYCPECR   67 (70)
T ss_dssp             SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCS---SCCSSSCCCCTTTS
T ss_pred             CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcC---CCCCCCCcCCcCcc
Confidence            6788898777789999999999999999999875   34466 99999884

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=99.08  E-value=2.8e-11  Score=77.21  Aligned_cols=50  Identities=22%  Similarity=0.640  Sum_probs=42.6

Q ss_pred             CCccccccccccccC--CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         33 PVPESDKCKACDRDT--SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~--~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      ...+++.|.+|+..+  +.+.||+|+.|+++||.+|++++.     ++.+.|+|+.|
T Consensus        12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~-----vP~g~W~C~~C   63 (71)
T 2ku3_A           12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-----IPEGQWLCRHC   63 (71)
T ss_dssp             CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS-----CCSSCCCCHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc-----CCCCCcCCccC
Confidence            345688999999886  568999999999999999999862     45789999987

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=99.07  E-value=3.9e-11  Score=90.78  Aligned_cols=46  Identities=24%  Similarity=0.573  Sum_probs=40.1

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~  137 (145)
                      +|.+|+..   +.||+||.|+++||++||+  +..+|+|.|+|+.|....+
T Consensus         9 ~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~   56 (207)
T 3u5n_A            9 WCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK   56 (207)
T ss_dssp             SBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred             CCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence            67788864   4699999999999999995  8899999999999997654

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=99.07  E-value=2.3e-11  Score=76.29  Aligned_cols=54  Identities=24%  Similarity=0.507  Sum_probs=42.4

Q ss_pred             ccccccccccccC--CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         35 PESDKCKACDRDT--SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        35 ~~~~~C~~C~~~~--~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      .++.+|.+|+...  +.+.||+|+.|+.+||+.|+++++......+.+.|+|+.|.
T Consensus         4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~   59 (66)
T 2yt5_A            4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV   59 (66)
T ss_dssp             CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCc
Confidence            4578999999873  34799999999999999999997642111157899999884

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=99.07  E-value=3.5e-11  Score=79.78  Aligned_cols=49  Identities=22%  Similarity=0.668  Sum_probs=42.2

Q ss_pred             CccccccccccccC--CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         34 VPESDKCKACDRDT--SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        34 ~~~~~~C~~C~~~~--~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      ..+++.|.+|+.++  +.+.||+|+.|..+||+.|++++.     ++.+.|+|+.|
T Consensus        22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~-----vP~g~W~C~~C   72 (88)
T 2l43_A           22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-----IPEGQWLCRHC   72 (88)
T ss_dssp             CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS-----CCSSCCCCHHH
T ss_pred             CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc-----cCCCceECccc
Confidence            45688999999887  558999999999999999999963     45789999987

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=99.06  E-value=8e-11  Score=80.89  Aligned_cols=55  Identities=22%  Similarity=0.713  Sum_probs=46.7

Q ss_pred             cccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCccccc
Q psy17723         38 DKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEK   95 (145)
Q Consensus        38 ~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~   95 (145)
                      ..|.+|+..++.+.||.|+.|.++||.+||++++.   .++.+.|+|+.|..|..+..
T Consensus        55 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~---~~P~g~W~C~~C~~c~~g~s  109 (111)
T 2ysm_A           55 KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMK---SVPTNGWKCKNCRICISGPS  109 (111)
T ss_dssp             CCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCS---SCCSSCCCCHHHHCCSCSCC
T ss_pred             CcccccCccCCCCCeeECCCCCcHHhHHhcCCccc---cCCCCCcCCcCCcCcCCCCC
Confidence            37889999987788999999999999999999874   44568999999888876654

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=99.05  E-value=2.6e-11  Score=78.05  Aligned_cols=48  Identities=23%  Similarity=0.471  Sum_probs=39.6

Q ss_pred             cCcccccccc-CCCceecCCcccccccccccCCCCCC---CCccccccccchh
Q psy17723         89 SCVACEKAQD-DDKMLFCDLCDRGYHNYCIGLDKIPT---VGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~-~~~ll~Cd~C~~~yH~~Cl~l~~~p~---~~W~C~~C~~~~~  137 (145)
                      +| +|+++.+ ++.||.||.|..|||..|++++..+.   ..|+|+.|.....
T Consensus        12 yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~   63 (75)
T 3kqi_A           12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG   63 (75)
T ss_dssp             ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred             EE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCC
Confidence            66 8998754 67899999999999999999766542   5799999997643

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=99.04  E-value=1e-10  Score=87.58  Aligned_cols=45  Identities=22%  Similarity=0.519  Sum_probs=40.1

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccch
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKN  136 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~  136 (145)
                      +|.+|+.   ++.||.||.|+++||++|+.  +..+|.|.|+|+.|....
T Consensus         4 ~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~   50 (189)
T 2ro1_A            4 ICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   50 (189)
T ss_dssp             CBTTTCC---CSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred             cCccCCC---CCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence            6889997   45799999999999999995  889999999999998654

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=99.02  E-value=1.6e-10  Score=74.77  Aligned_cols=47  Identities=28%  Similarity=0.755  Sum_probs=39.9

Q ss_pred             ccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCc-ccccccc
Q psy17723         39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYD-WQCSDCK   88 (145)
Q Consensus        39 ~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~-W~C~~C~   88 (145)
                      .|.+|+..++.+.||.|+.|.++||++||++++..   ++.+. |+|+.|+
T Consensus        28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~---~P~g~~W~C~~C~   75 (77)
T 3shb_A           28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSS---VPSEDEWYCPECR   75 (77)
T ss_dssp             SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSS---CCSSSCCCCTTTC
T ss_pred             cCCccCCCCCCcceeEeCCCCCccCcccCCCcccC---CCCCCceECcCcc
Confidence            68888888877899999999999999999998753   44566 9999884

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=99.00  E-value=2.3e-10  Score=84.99  Aligned_cols=48  Identities=27%  Similarity=0.732  Sum_probs=42.2

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ++++.|.+|+.+|   +||.|+.|.++||..|+.+++.   .++.+.|+|+.|+
T Consensus         2 ~~~~~C~~C~~~g---~ll~Cd~C~~~~H~~C~~p~l~---~~p~~~W~C~~C~   49 (184)
T 3o36_A            2 PNEDWCAVCQNGG---ELLCCEKCPKVFHLSCHVPTLT---NFPSGEWICTFCR   49 (184)
T ss_dssp             CSCSSCTTTCCCS---SCEECSSSSCEECTTTSSSCCS---SCCSSCCCCTTTS
T ss_pred             CCCCccccCCCCC---eeeecCCCCcccCccccCCCCC---CCCCCCEECcccc
Confidence            4688999999988   8999999999999999999874   4457899999885

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.99  E-value=1.5e-10  Score=76.67  Aligned_cols=54  Identities=19%  Similarity=0.490  Sum_probs=43.4

Q ss_pred             ccccccccccccCC--CCCcEecCCCCCCccccCCCCCCCCCC-cCCCCcccccccc
Q psy17723         35 PESDKCKACDRDTS--AGEMIQCGKCVRYLHPACLDLPGEMLP-HMKLYDWQCSDCK   88 (145)
Q Consensus        35 ~~~~~C~~C~~~~~--~~~ll~C~~C~~~~H~~Cl~~~~~~~~-~~~~~~W~C~~C~   88 (145)
                      ..+.+|.+|+....  .+.||+|+.|.+.||++|+.+++.... .++.+.|+|+.|.
T Consensus        14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~   70 (88)
T 1wev_A           14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT   70 (88)
T ss_dssp             HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred             CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCcccc
Confidence            45779999998864  368999999999999999999874211 2567899999884

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.97  E-value=6.3e-11  Score=76.91  Aligned_cols=48  Identities=19%  Similarity=0.418  Sum_probs=39.8

Q ss_pred             cCcccccccc-CCCceecCCcccccccccccCCCCC---CCCccccccccchh
Q psy17723         89 SCVACEKAQD-DDKMLFCDLCDRGYHNYCIGLDKIP---TVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~-~~~ll~Cd~C~~~yH~~Cl~l~~~p---~~~W~C~~C~~~~~  137 (145)
                      +| +|++..+ ++.||.||.|+.|||..|++++..+   ...|+|+.|.....
T Consensus        14 ~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~   65 (79)
T 1wep_A           14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG   65 (79)
T ss_dssp             CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred             EE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence            66 8998764 6889999999999999999965543   36899999997754

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.94  E-value=2.6e-10  Score=70.97  Aligned_cols=49  Identities=22%  Similarity=0.493  Sum_probs=39.3

Q ss_pred             cCcccccccc-CCCceecCCcccccccccccCCCCC---CCCccccccccchh
Q psy17723         89 SCVACEKAQD-DDKMLFCDLCDRGYHNYCIGLDKIP---TVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~-~~~ll~Cd~C~~~yH~~Cl~l~~~p---~~~W~C~~C~~~~~  137 (145)
                      +|.+|+++.+ ++.||.||.|+.|||..|++++..+   ...|+|+.|+.++.
T Consensus         8 ~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~   60 (64)
T 1we9_A            8 QCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG   60 (64)
T ss_dssp             CCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred             CCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence            4558888754 5789999999999999999976553   36899999987543

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=98.93  E-value=4.3e-10  Score=85.01  Aligned_cols=48  Identities=27%  Similarity=0.708  Sum_probs=42.3

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      .+++.|.+|+.+|   +||.|++|.++||..|+.|++.   .++.+.|+|+.|.
T Consensus         5 ~~~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~---~~p~~~W~C~~C~   52 (207)
T 3u5n_A            5 PNEDWCAVCQNGG---DLLCCEKCPKVFHLTCHVPTLL---SFPSGDWICTFCR   52 (207)
T ss_dssp             SSCSSBTTTCCCE---EEEECSSSSCEECTTTSSSCCS---SCCSSCCCCTTTS
T ss_pred             CCCCCCCCCCCCC---ceEEcCCCCCccCCccCCCCCC---CCCCCCEEeCcee
Confidence            4688999999998   8999999999999999999874   4557899999885

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=98.93  E-value=1.6e-10  Score=78.97  Aligned_cols=50  Identities=24%  Similarity=0.585  Sum_probs=41.1

Q ss_pred             cCccccccc-cCCCceecC-CcccccccccccCCC--------CCCCCccccccccchhh
Q psy17723         89 SCVACEKAQ-DDDKMLFCD-LCDRGYHNYCIGLDK--------IPTVGLVFTLKKKKNKK  138 (145)
Q Consensus        89 ~C~vC~~~~-~~~~ll~Cd-~C~~~yH~~Cl~l~~--------~p~~~W~C~~C~~~~~~  138 (145)
                      .|.+|+++. +++.||.|| .|+.|||..|++|+.        .|++.|+|+.|..+...
T Consensus         5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~   64 (105)
T 2xb1_A            5 PCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG   64 (105)
T ss_dssp             BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred             CCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence            566888873 356899998 999999999999765        47789999999977653

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.92  E-value=2e-10  Score=74.38  Aligned_cols=49  Identities=20%  Similarity=0.461  Sum_probs=41.2

Q ss_pred             cCccccccccCCCceecC--CcccccccccccCCCCCC-------CCccccccccchhh
Q psy17723         89 SCVACEKAQDDDKMLFCD--LCDRGYHNYCIGLDKIPT-------VGLVFTLKKKKNKK  138 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd--~C~~~yH~~Cl~l~~~p~-------~~W~C~~C~~~~~~  138 (145)
                      +| +|++.++.+.||.||  .|..|||..|++|+..+.       ..|+|+.|+..+++
T Consensus        18 ~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~   75 (78)
T 1wew_A           18 RC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP   75 (78)
T ss_dssp             CC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred             Ee-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence            67 899987778999999  999999999999776552       58999999876543

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=98.92  E-value=3.9e-10  Score=71.27  Aligned_cols=46  Identities=22%  Similarity=0.377  Sum_probs=38.3

Q ss_pred             cCccccccccCCCceecCCcccccccccccCCCC-CCCCccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKI-PTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~~~-p~~~W~C~~C~~~  135 (145)
                      +| +|++..+++.||.||.|..|||..|++++.. ..+.|+|+.|...
T Consensus        21 ~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s   67 (68)
T 3o70_A           21 TC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS   67 (68)
T ss_dssp             CS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred             Ee-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence            66 8998877778999999999999999996542 3468999999753

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=98.92  E-value=3.6e-10  Score=72.48  Aligned_cols=51  Identities=22%  Similarity=0.632  Sum_probs=42.1

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      .+...|.+|+...+.+.||.|+.|..+||..|++++....   +...|+|+.|.
T Consensus        16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~---~~~~w~C~~C~   66 (75)
T 2k16_A           16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPP---EEMQWFCPKCA   66 (75)
T ss_dssp             CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCC---SSSCCCCTTTH
T ss_pred             CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCC---CCCCEEChhcc
Confidence            3466899999987767899999999999999999976432   34699999873

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=98.88  E-value=8.4e-10  Score=76.26  Aligned_cols=47  Identities=26%  Similarity=0.630  Sum_probs=40.6

Q ss_pred             ccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        39 ~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      .|.+|+..++.+.||.|+.|.++||++||++++.   .++.+.|+|+.|.
T Consensus        60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~---~~P~g~W~C~~C~  106 (114)
T 2kwj_A           60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVA---EPPEGSWSCHLCW  106 (114)
T ss_dssp             CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCS---SCCSSCCCCHHHH
T ss_pred             ccCcccccCCCCceEEcCCCCccccccccCCCcc---CCCCCCeECcccc
Confidence            6889998877789999999999999999999874   4557899999773

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.88  E-value=1.4e-10  Score=74.70  Aligned_cols=48  Identities=19%  Similarity=0.539  Sum_probs=40.4

Q ss_pred             cCccccccccCCCceecCCcccccccccccCCCCC-------CCCccccccccchh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIP-------TVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~~~p-------~~~W~C~~C~~~~~  137 (145)
                      +| +|++..+++.||.||.|+.|||..|++|+..+       ...|+|+.|...+.
T Consensus        18 ~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~   72 (76)
T 1wem_A           18 YC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG   72 (76)
T ss_dssp             CS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred             EE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence            66 89988877799999999999999999976543       47899999987654

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=98.87  E-value=5.5e-10  Score=66.92  Aligned_cols=45  Identities=22%  Similarity=0.384  Sum_probs=37.5

Q ss_pred             cCccccccccCCCceecCCcccccccccccCCCC-CCCCcccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKI-PTVGLVFTLKKK  134 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~~~-p~~~W~C~~C~~  134 (145)
                      +| +|+++.+++.||.||.|..|||..|++++.. ....|+|+.|+.
T Consensus         6 ~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~   51 (52)
T 3o7a_A            6 TC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD   51 (52)
T ss_dssp             CS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred             EE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence            45 8998877789999999999999999996553 246899999964

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=98.86  E-value=8.6e-10  Score=79.00  Aligned_cols=45  Identities=18%  Similarity=0.461  Sum_probs=38.8

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CC-----C--CCCCCccccccccch
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LD-----K--IPTVGLVFTLKKKKN  136 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~-----~--~p~~~W~C~~C~~~~  136 (145)
                      +|.+|+.   ++.||.||.|+++||..||.  +.     +  .|.+.|.|+.|..+.
T Consensus        65 ~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p  118 (142)
T 2lbm_A           65 QCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP  118 (142)
T ss_dssp             SCSSSCC---CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred             eecccCC---CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence            7889997   67899999999999999997  32     3  489999999999763

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=98.86  E-value=1.5e-09  Score=81.15  Aligned_cols=46  Identities=22%  Similarity=0.674  Sum_probs=40.7

Q ss_pred             ccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ++.|.+|+.+|   +||.|++|.++||..|+.+++.   .++.+.|+|+.|.
T Consensus         2 ~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~---~~p~g~W~C~~C~   47 (189)
T 2ro1_A            2 ATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQ---DVPGEEWSCSLCH   47 (189)
T ss_dssp             CCCBTTTCCCS---SCCCCTTTCCBCCSTTSTTCCS---SCCCTTCCTTTTS
T ss_pred             CCcCccCCCCC---ceeECCCCCchhccccCCCCcc---cCCCCCCCCcCcc
Confidence            67899999988   8999999999999999999774   4457899999984

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=98.85  E-value=7.6e-10  Score=69.83  Aligned_cols=46  Identities=22%  Similarity=0.456  Sum_probs=37.6

Q ss_pred             cCccccccccCCCceecC--CcccccccccccCCCCCC------CCccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCD--LCDRGYHNYCIGLDKIPT------VGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd--~C~~~yH~~Cl~l~~~p~------~~W~C~~C~~~  135 (145)
                      +| +|+...+.+.||.||  .|..|||..|++++..|.      ..|+|+.|+..
T Consensus        12 ~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~   65 (68)
T 2rsd_A           12 RC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS   65 (68)
T ss_dssp             CC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred             Ee-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence            56 899887788999999  499999999999755442      36999999754

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=98.84  E-value=2.5e-09  Score=73.66  Aligned_cols=48  Identities=31%  Similarity=0.726  Sum_probs=40.0

Q ss_pred             cccccccccC-CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         38 DKCKACDRDT-SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        38 ~~C~~C~~~~-~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      .+|.+|+..+ +.+.||.|+.|.++||++||++++.   .++.+.|+|+.|+
T Consensus        62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~---~~P~~~W~C~~C~  110 (112)
T 3v43_A           62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLT---RMPKGMWICQICR  110 (112)
T ss_dssp             CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCS---SCCSSCCCCTTTS
T ss_pred             CccccccCcCCCccceEEcCCCCCeeecccCCCCCC---CCCCCCeECCCCC
Confidence            3788998765 3478999999999999999999864   4557899999884

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=98.84  E-value=2e-09  Score=82.43  Aligned_cols=49  Identities=24%  Similarity=0.691  Sum_probs=38.3

Q ss_pred             ccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCC-cccccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLY-DWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~-~W~C~~C~   88 (145)
                      +..|.+|+..++.+.||.|+.|.++||+.||+|++.   .++.+ .|+|+.|.
T Consensus       174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~---~vP~G~~W~Cp~C~  223 (226)
T 3ask_A          174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS---SVPSEDEWYCPECR  223 (226)
T ss_dssp             TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCC---SCCSSSCCCCGGGC
T ss_pred             CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcc---cCCCCCCCCCcCCc
Confidence            457999998877789999999999999999999875   34466 99999883

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=98.84  E-value=3.5e-10  Score=70.90  Aligned_cols=46  Identities=20%  Similarity=0.537  Sum_probs=38.2

Q ss_pred             cCccccccc-cCCCceecC-CcccccccccccCCC--------CCCCCcccccccc
Q psy17723         89 SCVACEKAQ-DDDKMLFCD-LCDRGYHNYCIGLDK--------IPTVGLVFTLKKK  134 (145)
Q Consensus        89 ~C~vC~~~~-~~~~ll~Cd-~C~~~yH~~Cl~l~~--------~p~~~W~C~~C~~  134 (145)
                      .|.+|+++. ++..||.|| .|++|||..|++|+.        .|.+.|+|+.|.+
T Consensus        10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~   65 (65)
T 2vpb_A           10 PCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA   65 (65)
T ss_dssp             BCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred             cCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence            566889874 466889999 999999999999654        4788999999963

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=98.81  E-value=1.1e-09  Score=75.66  Aligned_cols=93  Identities=22%  Similarity=0.402  Sum_probs=54.6

Q ss_pred             cccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCc------CCCCcccccccccCcccc---ccc-cCCCceecCC
Q psy17723         38 DKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPH------MKLYDWQCSDCKSCVACE---KAQ-DDDKMLFCDL  107 (145)
Q Consensus        38 ~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~------~~~~~W~C~~C~~C~vC~---~~~-~~~~ll~Cd~  107 (145)
                      .+|.+|+..       .|+.|...||+.|++.+...-..      ....-+.|..|.+|..|.   ... .+..||.|+.
T Consensus         8 ~~C~~C~~~-------~C~~C~~c~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~c~~c~~c~~c~~~~~~~~~m~~C~~   80 (117)
T 4bbq_A            8 RKCKACVQG-------ECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCI   80 (117)
T ss_dssp             SCSHHHHSC-------CCSCSHHHHHSGGGTSCCCSCCCCGGGCCSSCBCCTTCBCTTTCCBCCHHHHCCGGGSCEEETT
T ss_pred             CcCcCcCCc-------CCCCCCCCcCCcccCCCCccccchhheeeccccccccccccccCcccccccccccCcceEEeee
Confidence            356666543       29999999999999876432111      011112222233333333   322 2456889999


Q ss_pred             cccccccccccCC--CCC----CCCccccccccchh
Q psy17723        108 CDRGYHNYCIGLD--KIP----TVGLVFTLKKKKNK  137 (145)
Q Consensus       108 C~~~yH~~Cl~l~--~~p----~~~W~C~~C~~~~~  137 (145)
                      |+.+||..|+++.  .++    ...|+|+.|..+..
T Consensus        81 C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~~  116 (117)
T 4bbq_A           81 CNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDS  116 (117)
T ss_dssp             TCCEECGGGCCSCCCCEECSSSSSEEECTTTC----
T ss_pred             cCCeEECCCCCCCccccccccCCCCeECCCCcCCCC
Confidence            9999999999842  122    23599999997753

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.80  E-value=1.3e-09  Score=69.46  Aligned_cols=47  Identities=28%  Similarity=0.569  Sum_probs=37.6

Q ss_pred             cCccccccccC-CCceecCCcccccccccccCCCC--CCCCccccccccch
Q psy17723         89 SCVACEKAQDD-DKMLFCDLCDRGYHNYCIGLDKI--PTVGLVFTLKKKKN  136 (145)
Q Consensus        89 ~C~vC~~~~~~-~~ll~Cd~C~~~yH~~Cl~l~~~--p~~~W~C~~C~~~~  136 (145)
                      +| +|++..+. ..||.||.|..|||..|+++...  ....|+|+.|..+.
T Consensus        18 ~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~   67 (72)
T 1wee_A           18 DC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS   67 (72)
T ss_dssp             CC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred             Ee-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence            66 79987544 47999999999999999996542  34789999998643

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=98.76  E-value=1.4e-09  Score=65.09  Aligned_cols=44  Identities=18%  Similarity=0.428  Sum_probs=35.7

Q ss_pred             Ccccccccc-CCCceecC-CcccccccccccCCCCC--CCCccccccc
Q psy17723         90 CVACEKAQD-DDKMLFCD-LCDRGYHNYCIGLDKIP--TVGLVFTLKK  133 (145)
Q Consensus        90 C~vC~~~~~-~~~ll~Cd-~C~~~yH~~Cl~l~~~p--~~~W~C~~C~  133 (145)
                      |-+|+++.+ ++.||.|| .|+.|||..|++|+..+  ...|+|+.|+
T Consensus         5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            448888764 56799999 89999999999976543  4789999985

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.74  E-value=4e-08  Score=65.34  Aligned_cols=46  Identities=35%  Similarity=0.855  Sum_probs=35.9

Q ss_pred             cccccccccccCCCCCcEecCC--CC-CCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGK--CV-RYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~--C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ....| +|++... ..||.|+.  |. .+||+.|+++.     ..+...|+|+.|.
T Consensus        35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVgl~-----~~p~g~W~Cp~C~   83 (91)
T 1weu_A           35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLT-----TKPRGKWFCPRCS   83 (91)
T ss_dssp             CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTTCS-----SCCCSSCCCTTTC
T ss_pred             CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCCcC-----cCCCCCEECcCcc
Confidence            45677 9998653 48999999  77 79999999974     2335799999883

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=98.69  E-value=3.7e-08  Score=62.63  Aligned_cols=46  Identities=35%  Similarity=0.855  Sum_probs=36.0

Q ss_pred             cccccccccccCCCCCcEecCC--CC-CCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGK--CV-RYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~--C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      +...| +|++... ..||.|+.  |. .+||+.|+++.     .++.+.|+|+.|.
T Consensus        15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvgl~-----~~p~g~w~Cp~C~   63 (71)
T 1wen_A           15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLT-----TKPRGKWFCPRCS   63 (71)
T ss_dssp             SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTTCS-----SCCSSCCCCTTTS
T ss_pred             CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCCcC-----cCCCCCEECCCCC
Confidence            45678 8998653 48999999  77 79999999974     3345799999883

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=98.67  E-value=2.9e-08  Score=66.78  Aligned_cols=46  Identities=26%  Similarity=0.741  Sum_probs=37.3

Q ss_pred             cccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         38 DKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        38 ~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ..| +|+...+.+.||.|+.|..+||..|++++...   ++ ..|+|+.|.
T Consensus        29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~---~p-~~w~C~~C~   74 (98)
T 2lv9_A           29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQH---IP-DTYLCERCQ   74 (98)
T ss_dssp             CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTS---CC-SSBCCTTTS
T ss_pred             EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccC---CC-CCEECCCCc
Confidence            457 78888777899999999999999999997543   33 379999873

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=98.61  E-value=3.2e-09  Score=77.94  Aligned_cols=48  Identities=23%  Similarity=0.508  Sum_probs=39.5

Q ss_pred             cCcccccccc-CCCceecCCcccccccccccCCCC---CCCCccccccccchh
Q psy17723         89 SCVACEKAQD-DDKMLFCDLCDRGYHNYCIGLDKI---PTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~-~~~ll~Cd~C~~~yH~~Cl~l~~~---p~~~W~C~~C~~~~~  137 (145)
                      +| +|+++++ ++.||.||.|++|||..|+++...   ..+.|+|+.|+....
T Consensus        10 ~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~   61 (174)
T 2ri7_A           10 YC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTED   61 (174)
T ss_dssp             ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHH
T ss_pred             Ee-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchhc
Confidence            67 8898754 678999999999999999996543   367899999997654

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=98.49  E-value=6.4e-08  Score=64.21  Aligned_cols=46  Identities=30%  Similarity=0.718  Sum_probs=35.5

Q ss_pred             cccccccccccCCCCCcEecCCCC---CCccccCCCCCCCCCCcCCCCcccccc-cc
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGKCV---RYLHPACLDLPGEMLPHMKLYDWQCSD-CK   88 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~C~---~~~H~~Cl~~~~~~~~~~~~~~W~C~~-C~   88 (145)
                      ....| +|+.... ++||.|+.|.   .+||+.|+++..     .+.+.|+|+. |.
T Consensus        25 ~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVgl~~-----~p~~~W~Cp~cC~   74 (90)
T 2jmi_A           25 EEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVGLKQ-----APKGKWYCSKDCK   74 (90)
T ss_dssp             CSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSSCSS-----CTTSCCCSSHHHH
T ss_pred             CCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCCCCc-----CCCCCccCChhhc
Confidence            35578 8997654 3799999966   899999999743     3357999998 73

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=98.49  E-value=3.1e-08  Score=60.92  Aligned_cols=45  Identities=33%  Similarity=0.848  Sum_probs=35.2

Q ss_pred             ccccccccccCCCCCcEecCC--CC-CCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQCGK--CV-RYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~--C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ...| +|++... +.||.|+.  |. .+||+.|+++.     .++.+.|+|+.|.
T Consensus        10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvgl~-----~~p~g~w~C~~C~   57 (60)
T 2vnf_A           10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLT-----TKPRGKWFCPRCS   57 (60)
T ss_dssp             CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCS-----SCCSSCCCCHHHH
T ss_pred             CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCCCC-----cCCCCCEECcCcc
Confidence            4567 8998653 58999999  66 89999999963     3345799999873

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=98.47  E-value=1.3e-07  Score=59.50  Aligned_cols=48  Identities=21%  Similarity=0.590  Sum_probs=38.8

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      .....| +|+...+.+.||.|+.|..+||..|+++....   + ...|+|+.|
T Consensus        17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~---~-~~~~~C~~C   64 (68)
T 3o70_A           17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSN---V-PEVFVCQKC   64 (68)
T ss_dssp             TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTS---C-CSSCCCHHH
T ss_pred             CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCccc---C-CCcEECCCC
Confidence            345578 99998777789999999999999999997542   2 258999877

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=98.46  E-value=3.9e-08  Score=60.29  Aligned_cols=45  Identities=36%  Similarity=0.863  Sum_probs=35.1

Q ss_pred             ccccccccccCCCCCcEecCC--CC-CCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQCGK--CV-RYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~--C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ...| +|++... +.||.|+.  |. .+||..|+++.     ..+.+.|+|+.|.
T Consensus         9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvgl~-----~~p~~~w~Cp~C~   56 (59)
T 3c6w_A            9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVDLT-----TKPKGKWFCPRCV   56 (59)
T ss_dssp             CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCS-----SCCSSCCCCHHHH
T ss_pred             CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCCcc-----cCCCCCEECcCcc
Confidence            4567 9998643 48999999  77 79999999974     3335799999873

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=98.44  E-value=1.5e-08  Score=71.45  Aligned_cols=86  Identities=19%  Similarity=0.485  Sum_probs=57.1

Q ss_pred             ccccccccccCC-----C------CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCccccccccCCCceec
Q psy17723         37 SDKCKACDRDTS-----A------GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFC  105 (145)
Q Consensus        37 ~~~C~~C~~~~~-----~------~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~C  105 (145)
                      ...|..|+..-.     .      =..+.|..|...|+..=.....      ....      .+|.+|+.   +++|+.|
T Consensus         8 ~~~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~------Dg~~------~~C~vC~d---GG~LlcC   72 (129)
T 3ql9_A            8 IVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDS------DGMD------EQCRWCAE---GGNLICC   72 (129)
T ss_dssp             SCBCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHSCCCBCT------TSCB------SSCTTTCC---CSEEEEC
T ss_pred             ceEeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhccccccCC------CCCC------CcCeecCC---CCeeEec
Confidence            446777776552     0      2356677776666543222110      0111      16888887   6789999


Q ss_pred             CCccccccccccc-------CCCC--CCCCccccccccchh
Q psy17723        106 DLCDRGYHNYCIG-------LDKI--PTVGLVFTLKKKKNK  137 (145)
Q Consensus       106 d~C~~~yH~~Cl~-------l~~~--p~~~W~C~~C~~~~~  137 (145)
                      |.|.++||..|+.       +.++  |.+.|+|..|.....
T Consensus        73 d~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl  113 (129)
T 3ql9_A           73 DFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL  113 (129)
T ss_dssp             SSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred             CCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence            9999999999997       3344  889999999987644

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=98.44  E-value=1.2e-08  Score=72.96  Aligned_cols=51  Identities=20%  Similarity=0.453  Sum_probs=42.1

Q ss_pred             CccccccccccccCCCCCcEecCCCCCCccccCCCCCCCC--CCc--CCCCccccccc
Q psy17723         34 VPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEM--LPH--MKLYDWQCSDC   87 (145)
Q Consensus        34 ~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~--~~~--~~~~~W~C~~C   87 (145)
                      ..+++.|.+|+.+|   +||.|+.|.+.||..|+.+++..  +..  .+.+.|+|+.|
T Consensus        60 Dg~~d~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C  114 (142)
T 2lbm_A           60 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC  114 (142)
T ss_dssp             TSCBCSCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTT
T ss_pred             CCCCCeecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecc
Confidence            45789999999999   99999999999999999987641  111  25789999977

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=98.41  E-value=6.3e-08  Score=59.96  Aligned_cols=45  Identities=31%  Similarity=0.854  Sum_probs=35.1

Q ss_pred             ccccccccccCCCCCcEecCC--CC-CCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQCGK--CV-RYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~--C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ...| +|++... ..||.|+.  |. .+||+.|+++..     .+.+.|+|+.|.
T Consensus        11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvgl~~-----~p~~~w~Cp~C~   58 (62)
T 2g6q_A           11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVSLTY-----KPKGKWYCPKCR   58 (62)
T ss_dssp             CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCSS-----CCSSCCCCHHHH
T ss_pred             CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCCcCc-----CCCCCEECcCcc
Confidence            4577 9998643 48999999  55 999999999742     335799999873

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.39  E-value=1.6e-07  Score=58.13  Aligned_cols=51  Identities=22%  Similarity=0.622  Sum_probs=39.8

Q ss_pred             cccccccccccCC-CCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         36 ESDKCKACDRDTS-AGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        36 ~~~~C~~C~~~~~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      +...|.+|+...+ ...||.|+.|..+||..|+++......  ....|+|+.|.
T Consensus         5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~--~~~~~~C~~C~   56 (64)
T 1we9_A            5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAE--HIKQYKCPSCS   56 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGG--GCSSCCCHHHH
T ss_pred             CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhc--CCCcEECCCCc
Confidence            4668999998864 478999999999999999999754322  12589998773

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=98.37  E-value=3.2e-08  Score=83.44  Aligned_cols=48  Identities=21%  Similarity=0.479  Sum_probs=40.1

Q ss_pred             cCcccccccc-CCCceecCCcccccccccccCCCCCC---CCccccccccchh
Q psy17723         89 SCVACEKAQD-DDKMLFCDLCDRGYHNYCIGLDKIPT---VGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~-~~~ll~Cd~C~~~yH~~Cl~l~~~p~---~~W~C~~C~~~~~  137 (145)
                      +| +|+++.+ ++.||.||.|+.|||..|++++..+.   +.|+|+.|.....
T Consensus        39 yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~   90 (488)
T 3kv5_D           39 YC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG   90 (488)
T ss_dssp             ET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred             EE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence            56 8998754 78899999999999999999776653   5799999997654

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=98.27  E-value=1.3e-07  Score=70.32  Aligned_cols=49  Identities=35%  Similarity=0.682  Sum_probs=37.8

Q ss_pred             cCccccccccCC----CceecCCcccccccccccCCC--------CCC-CCccccccccchh
Q psy17723         89 SCVACEKAQDDD----KMLFCDLCDRGYHNYCIGLDK--------IPT-VGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~~~----~ll~Cd~C~~~yH~~Cl~l~~--------~p~-~~W~C~~C~~~~~  137 (145)
                      +|.+|++..+++    .||.||.|++|||..|++++.        .|+ ..|+|+.|+....
T Consensus         4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~   65 (183)
T 3lqh_A            4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP   65 (183)
T ss_dssp             BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred             cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence            566888765443    499999999999999998653        232 4799999997654

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=98.22  E-value=5.2e-08  Score=81.37  Aligned_cols=50  Identities=20%  Similarity=0.414  Sum_probs=40.6

Q ss_pred             cCcccccccc-CCCceecCCcccccccccccCCCCC---CCCccccccccchhhh
Q psy17723         89 SCVACEKAQD-DDKMLFCDLCDRGYHNYCIGLDKIP---TVGLVFTLKKKKNKKK  139 (145)
Q Consensus        89 ~C~vC~~~~~-~~~ll~Cd~C~~~yH~~Cl~l~~~p---~~~W~C~~C~~~~~~~  139 (145)
                      +| +|+++.+ ++.|+.||.|+.|||..|++++..+   .+.|+|+.|.....+.
T Consensus         7 yC-iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~   60 (447)
T 3kv4_A            7 YC-LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPS   60 (447)
T ss_dssp             ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCC
T ss_pred             EE-eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCCc
Confidence            56 8998754 6889999999999999999976543   2679999999775533

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.20  E-value=1.4e-06  Score=55.14  Aligned_cols=48  Identities=19%  Similarity=0.581  Sum_probs=37.2

Q ss_pred             ccccccccccCCC-CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         37 SDKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ...| +|+...+. +.||.|+.|..+||..|+++....  .+ ...|+|+.|.
T Consensus        16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~--~~-~~~~~C~~C~   64 (72)
T 1wee_A           16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNAD--AL-PSKFLCFRCI   64 (72)
T ss_dssp             EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTS--CC-CSCCCCHHHH
T ss_pred             ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccc--cC-CCcEECCCcc
Confidence            4578 79988654 579999999999999999986431  12 3689998773

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=98.17  E-value=1.2e-06  Score=54.89  Aligned_cols=51  Identities=24%  Similarity=0.546  Sum_probs=37.5

Q ss_pred             ccccccccccCCCCCcEecCC--CCCCccccCCCCCCCCCCcC-CCCcccccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQCGK--CVRYLHPACLDLPGEMLPHM-KLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~--C~~~~H~~Cl~~~~~~~~~~-~~~~W~C~~C~   88 (145)
                      ...| +|+...+.+.||.|++  |..+||..|+++........ ....|+|+.|+
T Consensus        10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr   63 (68)
T 2rsd_A           10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR   63 (68)
T ss_dssp             EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred             CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence            4567 8988877789999995  99999999999864332211 12479999774

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=98.17  E-value=5.5e-08  Score=60.80  Aligned_cols=53  Identities=19%  Similarity=0.572  Sum_probs=39.5

Q ss_pred             cccccccccccCC-CCCcEecC-CCCCCccccCCCCCCCCCCc---CCCCcccccccc
Q psy17723         36 ESDKCKACDRDTS-AGEMIQCG-KCVRYLHPACLDLPGEMLPH---MKLYDWQCSDCK   88 (145)
Q Consensus        36 ~~~~C~~C~~~~~-~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~---~~~~~W~C~~C~   88 (145)
                      +...|.+|+...+ ...||.|+ .|..+||..|+++.......   .+...|+|+.|.
T Consensus         7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~   64 (65)
T 2vpb_A            7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM   64 (65)
T ss_dssp             --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred             CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence            4568999999854 47899999 99999999999986432111   134699999874

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.14  E-value=1.5e-06  Score=55.89  Aligned_cols=51  Identities=25%  Similarity=0.676  Sum_probs=39.2

Q ss_pred             cccccccccccCCCCCcEecC--CCCCCccccCCCCCCCCCC---cCCCCcccccccc
Q psy17723         36 ESDKCKACDRDTSAGEMIQCG--KCVRYLHPACLDLPGEMLP---HMKLYDWQCSDCK   88 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~--~C~~~~H~~Cl~~~~~~~~---~~~~~~W~C~~C~   88 (145)
                      ....| +|+...+...||.|+  .|..+||..|+++......   .. ...|+|+.|.
T Consensus        15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~-~~~~~C~~C~   70 (78)
T 1wew_A           15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPL-PESFYCEICR   70 (78)
T ss_dssp             CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCS-CSSCCCHHHH
T ss_pred             CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccC-CCCEECCCCC
Confidence            35678 899986668999999  9999999999998654321   22 3589999773

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=98.14  E-value=1.2e-06  Score=52.17  Aligned_cols=43  Identities=21%  Similarity=0.662  Sum_probs=35.0

Q ss_pred             cccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         42 ACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        42 ~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      +|+...+...||.|+.|..+||..|+++...   .+ ...|+|+.|.
T Consensus         8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~---~~-~~~~~C~~C~   50 (52)
T 3o7a_A            8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKS---NV-PEVFVCQKCR   50 (52)
T ss_dssp             TTCCBCTTCCEEECTTTCCEEETTTTTCCGG---GC-CSSCCCHHHH
T ss_pred             EeCCcCCCCCEEEcCCCCccccccccCCCcc---cC-CCcEECcCCC
Confidence            7888777679999999999999999998653   22 3589999773

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.14  E-value=1.7e-07  Score=60.00  Aligned_cols=51  Identities=22%  Similarity=0.591  Sum_probs=38.1

Q ss_pred             cccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcC--CCCccccccc
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHM--KLYDWQCSDC   87 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~--~~~~W~C~~C   87 (145)
                      +...| +|+...+...||.|+.|..+||..|+++.......+  ....|+|+.|
T Consensus        15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C   67 (76)
T 1wem_A           15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC   67 (76)
T ss_dssp             TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHH
T ss_pred             CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCC
Confidence            34567 899988767999999999999999999853211101  2358999877

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=98.07  E-value=9.7e-07  Score=52.55  Aligned_cols=47  Identities=26%  Similarity=0.704  Sum_probs=35.6

Q ss_pred             ccccccccCC-CCCcEecC-CCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         39 KCKACDRDTS-AGEMIQCG-KCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        39 ~C~~C~~~~~-~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      .|.+|+...+ ...||.|+ .|..+||..|+++....   .....|+|+.|+
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~---~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEM---AENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHH---HHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccc---cCCCCEECCCCC
Confidence            4667888764 47799999 89999999999986421   113689999883

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=98.07  E-value=1.6e-07  Score=66.10  Aligned_cols=51  Identities=20%  Similarity=0.489  Sum_probs=40.8

Q ss_pred             CccccccccccccCCCCCcEecCCCCCCccccCCCCCCCC--CCcC--CCCccccccc
Q psy17723         34 VPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEM--LPHM--KLYDWQCSDC   87 (145)
Q Consensus        34 ~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~--~~~~--~~~~W~C~~C   87 (145)
                      ..+++.|.+|+++|   +|+.|+.|.+.||..|+.+++..  +..+  +.+.|+|..|
T Consensus        54 Dg~~~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C  108 (129)
T 3ql9_A           54 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYIC  108 (129)
T ss_dssp             TSCBSSCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTT
T ss_pred             CCCCCcCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCc
Confidence            45788999999999   99999999999999999875321  1122  4679999877

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=1.2e-06  Score=55.33  Aligned_cols=45  Identities=29%  Similarity=0.764  Sum_probs=34.8

Q ss_pred             ccccccccccCCCCCcEecCCCC---CCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQCGKCV---RYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~C~---~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ...| +|++... +.||.|+.|+   .+||..|+++..     .+...|+|+.|.
T Consensus         6 ~~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvgl~~-----~p~~~w~Cp~C~   53 (70)
T 1x4i_A            6 SGYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVGLTE-----APKGKWYCPQCT   53 (70)
T ss_dssp             CCCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHTCSS-----CCSSCCCCHHHH
T ss_pred             CeEE-EcCCCCC-CCEeEeCCCCCCccCCcccccccCc-----CCCCCEECCCCC
Confidence            4567 5988753 4999999974   899999999853     335799999873

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=98.03  E-value=4e-07  Score=61.96  Aligned_cols=52  Identities=21%  Similarity=0.584  Sum_probs=38.7

Q ss_pred             ccccccccccCC-CCCcEecC-CCCCCccccCCCCCCCCCCc---CCCCcccccccc
Q psy17723         37 SDKCKACDRDTS-AGEMIQCG-KCVRYLHPACLDLPGEMLPH---MKLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~-~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~---~~~~~W~C~~C~   88 (145)
                      .-.|.+|+...+ ...||.|+ .|..+||..|+++.......   .+...|+|+.|.
T Consensus         3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~   59 (105)
T 2xb1_A            3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCL   59 (105)
T ss_dssp             CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred             cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECcccc
Confidence            457999999843 36899998 99999999999986422111   134699999874

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=97.99  E-value=1.4e-06  Score=73.72  Aligned_cols=41  Identities=22%  Similarity=0.402  Sum_probs=33.3

Q ss_pred             ccCCCceecCCcccccccccccCCCCC---CCCccccccccchh
Q psy17723         97 QDDDKMLFCDLCDRGYHNYCIGLDKIP---TVGLVFTLKKKKNK  137 (145)
Q Consensus        97 ~~~~~ll~Cd~C~~~yH~~Cl~l~~~p---~~~W~C~~C~~~~~  137 (145)
                      +.+..|+.||.|+.|||..|++++..+   .+.|+||.|.....
T Consensus        53 n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~g   96 (528)
T 3pur_A           53 KNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTG   96 (528)
T ss_dssp             TSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHHC
T ss_pred             CcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCCCC
Confidence            346788999999999999999976543   36899999997644

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=97.95  E-value=2.8e-06  Score=55.20  Aligned_cols=54  Identities=30%  Similarity=0.697  Sum_probs=40.7

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCC--------CCCCC-cCCCCccccccc
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLP--------GEMLP-HMKLYDWQCSDC   87 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~--------~~~~~-~~~~~~W~C~~C   87 (145)
                      ++.+++.|.||..-. .+.|+-|..|++.||..||...        .+++. ......|.|+.|
T Consensus        11 ~~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C   73 (89)
T 1wil_A           11 PVVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC   73 (89)
T ss_dssp             CCCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT
T ss_pred             CCCCCcccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCcccccc
Confidence            456899999999544 4599999999999999998663        22222 224679999977

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.87  E-value=3.7e-06  Score=54.11  Aligned_cols=48  Identities=27%  Similarity=0.731  Sum_probs=36.7

Q ss_pred             ccccccccccCC-CCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         37 SDKCKACDRDTS-AGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        37 ~~~C~~C~~~~~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      ...| +|+...+ ...||.|+.|..+||..|+++.....  .....|+|+.|
T Consensus        12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~--~~~~~~~C~~C   60 (79)
T 1wep_A           12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENA--VDIDIYHCPDC   60 (79)
T ss_dssp             CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHH--TTCSBBCCTTT
T ss_pred             ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccc--cCCCeEECCCc
Confidence            4466 9999865 57999999999999999999864221  11358988877

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=97.80  E-value=1.7e-06  Score=63.28  Aligned_cols=50  Identities=18%  Similarity=0.566  Sum_probs=38.4

Q ss_pred             cccccccccccCC-CCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         36 ESDKCKACDRDTS-AGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        36 ~~~~C~~C~~~~~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      +...| +|+..++ .+.||.|+.|..+||..|++.....  ......|+|+.|.
T Consensus         7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~--~~~~~~~~C~~C~   57 (174)
T 2ri7_A            7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSE--AELIDEYVCPQCQ   57 (174)
T ss_dssp             CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHH--HTTCSSCCCHHHH
T ss_pred             CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhh--ccCccCeecCCCc
Confidence            46789 9999864 4679999999999999999875321  1124699999774

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=97.79  E-value=5.6e-06  Score=52.78  Aligned_cols=47  Identities=26%  Similarity=0.716  Sum_probs=35.7

Q ss_pred             cccccccccCC-CCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         38 DKCKACDRDTS-AGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        38 ~~C~~C~~~~~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      ..| +|+...+ ...||.|+.|..+||..|+++......  ....|+|+.|
T Consensus        11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~--~~~~~~C~~C   58 (75)
T 3kqi_A           11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAP--DIDIYHCPNC   58 (75)
T ss_dssp             EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGG--GBSSCCCHHH
T ss_pred             eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccC--CCCEEECCCC
Confidence            345 8998754 478999999999999999998654322  1247988866

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=97.54  E-value=3.5e-05  Score=50.04  Aligned_cols=44  Identities=20%  Similarity=0.472  Sum_probs=35.3

Q ss_pred             cCccccccccCCCceecCCccccccccccc--------------CCCCCCCCccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--------------LDKIPTVGLVFTLKK  133 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--------------l~~~p~~~W~C~~C~  133 (145)
                      .|.||.... .+.++-|..|.+.||..||.              +.+.++..|.|+.|.
T Consensus        17 ~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce   74 (89)
T 1wil_A           17 MCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD   74 (89)
T ss_dssp             CCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred             ccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence            677888644 67889999999999999993              233467789999995

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=97.42  E-value=1.5e-05  Score=59.11  Aligned_cols=52  Identities=33%  Similarity=0.820  Sum_probs=37.2

Q ss_pred             ccccccccccCCCC----CcEecCCCCCCccccCCCCCCCCCCcC---C-CCcccccccc
Q psy17723         37 SDKCKACDRDTSAG----EMIQCGKCVRYLHPACLDLPGEMLPHM---K-LYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~~----~ll~C~~C~~~~H~~Cl~~~~~~~~~~---~-~~~W~C~~C~   88 (145)
                      ...|.+|+..-+.+    .||.|+.|..+||..|+++..+....+   + ...|.|+.|.
T Consensus         2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~   61 (183)
T 3lqh_A            2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT   61 (183)
T ss_dssp             CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTC
T ss_pred             cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCC
Confidence            34799999876553    499999999999999999853211111   1 1379999884

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=97.01  E-value=8.8e-05  Score=62.54  Aligned_cols=49  Identities=20%  Similarity=0.613  Sum_probs=37.2

Q ss_pred             ccccccccccCC-CCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         37 SDKCKACDRDTS-AGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ...| +|+...+ ...||.|+.|..+||..|++.......  ....|+|+.|.
T Consensus        37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~--~~~~~~C~~C~   86 (488)
T 3kv5_D           37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAV--DIDLYHCPNCA   86 (488)
T ss_dssp             CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGG--GEEEBCCHHHH
T ss_pred             CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCccccc--CCCEEECCCCc
Confidence            3456 9998754 578999999999999999998643211  12589999884

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=96.84  E-value=3.7e-05  Score=52.71  Aligned_cols=92  Identities=20%  Similarity=0.455  Sum_probs=63.4

Q ss_pred             cccccccccccCCC----CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc------------------cCccc
Q psy17723         36 ESDKCKACDRDTSA----GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK------------------SCVAC   93 (145)
Q Consensus        36 ~~~~C~~C~~~~~~----~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~------------------~C~vC   93 (145)
                      ++..|.+|.+.-..    ...+.-..|+..||..|+..++..       .-.||.|+                  .|.+|
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC   78 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCPTCRKKINHKRYHPIYIGSGTVSCPIC   78 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-------CSBCTTTCCBCTTTCEEECBCSSSSCBCTTT
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-------CCCCCCCCCcCccccccccccCCCCCCCCCC
Confidence            46689999876421    244455689999999999876431       23688775                  78888


Q ss_pred             ccccc----CCCceecCCccccccccccc--CCCCCCCCccccccccchhh
Q psy17723         94 EKAQD----DDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKK  138 (145)
Q Consensus        94 ~~~~~----~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~  138 (145)
                      ...-.    ....+....|+..||..|+.  +..    ...||.|+..-.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           79 MDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINH  125 (133)
T ss_dssp             CCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBCCG
T ss_pred             CCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcCCh
Confidence            76432    23444566899999999997  432    2489999976544

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=96.78  E-value=0.00053  Score=58.12  Aligned_cols=37  Identities=22%  Similarity=0.424  Sum_probs=29.4

Q ss_pred             CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         50 GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        50 ~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ..||.||.|..+||..|++.......  ....|+||.|.
T Consensus        56 ~~mI~CD~C~~WfH~~CVgi~~~~a~--~~~~y~Cp~C~   92 (528)
T 3pur_A           56 FQWIGCDSCQTWYHFLCSGLEQFEYY--LYEKFFCPKCV   92 (528)
T ss_dssp             TSEEECTTTCCEEEGGGTTCCGGGTT--TEEECCCTTTH
T ss_pred             CCEEECCCCCcCCCCcCCCCChhHhc--CCCeEECcCCc
Confidence            57999999999999999998653222  23589999884

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=96.58  E-value=0.00074  Score=45.96  Aligned_cols=39  Identities=31%  Similarity=0.798  Sum_probs=29.3

Q ss_pred             CCcEecCCCCCCccccCCCCCCCCCC-cCCCCcccccccc
Q psy17723         50 GEMIQCGKCVRYLHPACLDLPGEMLP-HMKLYDWQCSDCK   88 (145)
Q Consensus        50 ~~ll~C~~C~~~~H~~Cl~~~~~~~~-~~~~~~W~C~~C~   88 (145)
                      ..||.|+.|..+||..|+++..+... ......|.|+.|.
T Consensus        73 ~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~  112 (117)
T 4bbq_A           73 KKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCY  112 (117)
T ss_dssp             GSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC
T ss_pred             cceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCc
Confidence            56999999999999999998754322 1223469999773

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=96.26  E-value=0.00039  Score=50.33  Aligned_cols=86  Identities=17%  Similarity=0.327  Sum_probs=58.1

Q ss_pred             cccccccccccCCC-----CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCccccccccCCCceecC--Cc
Q psy17723         36 ESDKCKACDRDTSA-----GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCD--LC  108 (145)
Q Consensus        36 ~~~~C~~C~~~~~~-----~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~Cd--~C  108 (145)
                      -++.|..|++....     -..+.|..|...|+..-......      .+.      .+|.+|+.   ++.++.|+  .|
T Consensus        35 ~e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~~y~e~~f~~DeD------G~~------~yC~wC~~---Gg~l~~Cdn~~C   99 (159)
T 3a1b_A           35 IEDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQYDDD------GYQ------SYCTICCG---GREVLMCGNNNC   99 (159)
T ss_dssp             GGGSBTTTCCSCCCEECSSBSSEECHHHHHHHHHHTTCBCTT------SSB------SSCTTTSC---CSEEEECSSTTT
T ss_pred             ccCcccCCCCcCccccCCCccchhhHHHHHHHhhcccccCCC------CCc------ceeeEecC---CCeEEeeCCCCC
Confidence            37789999875421     34456666666665433332211      111      28889997   67999999  89


Q ss_pred             cccccccccc-------CCC-CCCCCccccccccch
Q psy17723        109 DRGYHNYCIG-------LDK-IPTVGLVFTLKKKKN  136 (145)
Q Consensus       109 ~~~yH~~Cl~-------l~~-~p~~~W~C~~C~~~~  136 (145)
                      .+.|=..|+.       +.. ...+.|.|-.|.++.
T Consensus       100 ~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~  135 (159)
T 3a1b_A          100 CRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG  135 (159)
T ss_dssp             CCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred             CCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence            9999999995       222 356789999999875

>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A

Probab=96.21  E-value=0.0027  Score=46.70  Aligned_cols=46  Identities=17%  Similarity=0.400  Sum_probs=31.5

Q ss_pred             cCcccccccc-CCCceecCCcccccccccccCC---CCCCC---Cccccccccc
Q psy17723         89 SCVACEKAQD-DDKMLFCDLCDRGYHNYCIGLD---KIPTV---GLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~-~~~ll~Cd~C~~~yH~~Cl~l~---~~p~~---~W~C~~C~~~  135 (145)
                      +| .||..++ ...||+|+.|.+|||..|+...   -+|-.   .+.|..|...
T Consensus         7 yC-YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~   59 (177)
T 3rsn_A            7 SV-DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS   59 (177)
T ss_dssp             -----CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred             EE-EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCC
Confidence            45 7887654 5678999999999999999721   23422   4679999974

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=95.61  E-value=0.00081  Score=56.09  Aligned_cols=48  Identities=21%  Similarity=0.561  Sum_probs=35.7

Q ss_pred             ccccccccCC-CCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         39 KCKACDRDTS-AGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        39 ~C~~C~~~~~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      +.-+|+...+ .+.||.|+.|..+||..|++......  .....|+|+.|.
T Consensus         6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~--~~~~~y~C~~C~   54 (447)
T 3kv4_A            6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKA--ADIDLYHCPNCE   54 (447)
T ss_dssp             EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHH--TTEEECCCHHHH
T ss_pred             eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccc--cCCCEEECCCCc
Confidence            3348988754 57899999999999999999853211  122589999884

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.58  E-value=0.009  Score=37.13  Aligned_cols=39  Identities=23%  Similarity=0.416  Sum_probs=28.1

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      ....+..|.||...-.....+.=..|+..||..|+..++
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~   49 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWL   49 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHH
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHH
Confidence            344577999998876543444334699999999998764

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.28  E-value=0.0037  Score=39.96  Aligned_cols=36  Identities=25%  Similarity=0.637  Sum_probs=25.6

Q ss_pred             ccccccccccccCCC-CCcEecCCC-----CCCccccCCCCCCC
Q psy17723         35 PESDKCKACDRDTSA-GEMIQCGKC-----VRYLHPACLDLPGE   72 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~-~~ll~C~~C-----~~~~H~~Cl~~~~~   72 (145)
                      ..++.|.||....+. +.|+  .-|     .+.||..||..|+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~--~pC~C~Gs~h~fH~~Cl~~Wl~   54 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLI--TPCHCTGSLHFVHQACLQQWIK   54 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEE--CSSSCCSSSCCEETTHHHHHHH
T ss_pred             CCCCCCeEcCccccCCCeeE--eccccCCcCCeeCHHHHHHHHh
Confidence            346799999976643 3444  334     49999999998763

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=95.28  E-value=0.0069  Score=35.01  Aligned_cols=37  Identities=19%  Similarity=0.373  Sum_probs=27.6

Q ss_pred             ccccccccccccCCC-CCcEecCCCCCCccccCCCCCC
Q psy17723         35 PESDKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      .++..|.+|.+.-.. +..+.-..|+..||..|+..++
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~   40 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL   40 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHH
Confidence            456789999887644 3344445699999999998765

>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A

Probab=95.22  E-value=0.012  Score=43.24  Aligned_cols=44  Identities=20%  Similarity=0.570  Sum_probs=28.9

Q ss_pred             cccccCCC-CCcEecCCCCCCccccCCCCCCCC-CCcCCCCccccc
Q psy17723         42 ACDRDTSA-GEMIQCGKCVRYLHPACLDLPGEM-LPHMKLYDWQCS   85 (145)
Q Consensus        42 ~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~~-~~~~~~~~W~C~   85 (145)
                      .|+..++. ..+|.|..|.++||..|+...... ++....+.+.|.
T Consensus         9 YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~   54 (177)
T 3rsn_A            9 DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCN   54 (177)
T ss_dssp             --CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECT
T ss_pred             EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEcc
Confidence            57777754 789999999999999999864322 222234556444

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=94.91  E-value=0.0081  Score=49.12  Aligned_cols=86  Identities=21%  Similarity=0.302  Sum_probs=56.4

Q ss_pred             cccccccccccCCC-----CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCccccccccCCCceecC--Cc
Q psy17723         36 ESDKCKACDRDTSA-----GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCD--LC  108 (145)
Q Consensus        36 ~~~~C~~C~~~~~~-----~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~Cd--~C  108 (145)
                      -++.|..|+.....     =..+.|..|...|+..=...+        ...+    ..+|.+|+.   ++.++.|+  .|
T Consensus        49 ~e~~C~~CG~~~~~~~HPl~~v~lC~~Ck~~y~~~~f~~D--------~DG~----~~yCr~C~~---Gg~l~~Cdn~~C  113 (386)
T 2pv0_B           49 IEDICICCGSLQVHTQHPLFEGGICAPCKDKFLDALFLYD--------DDGY----QSYCSICCS---GETLLICGNPDC  113 (386)
T ss_dssp             GGGSBTTTCCSCCCSBCSSBSSBCCHHHHHHHHTTTTCBC--------SSSS----BCSCTTTCC---CSSCEECCSTTC
T ss_pred             ccceeCCCCCcCccccCCCcCcchhhHHHHHHhccCcccC--------CCCC----cccceEcCC---CCeEEEeCCCCC
Confidence            36789999876421     234456666666653222211        1112    128889997   57899999  99


Q ss_pred             cccccccccc-------CCC-CCCCCccccccccch
Q psy17723        109 DRGYHNYCIG-------LDK-IPTVGLVFTLKKKKN  136 (145)
Q Consensus       109 ~~~yH~~Cl~-------l~~-~p~~~W~C~~C~~~~  136 (145)
                      .+.|=..|+.       +.. ...+.|.|-.|..+.
T Consensus       114 ~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p  149 (386)
T 2pv0_B          114 TRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS  149 (386)
T ss_dssp             CCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred             CcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence            9999999996       222 235789999999874

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=94.47  E-value=0.0021  Score=44.02  Aligned_cols=37  Identities=38%  Similarity=0.989  Sum_probs=26.6

Q ss_pred             CcEecCCCCCCccccCCCCCCCCC---CcC-CCCccccccc
Q psy17723         51 EMIQCGKCVRYLHPACLDLPGEML---PHM-KLYDWQCSDC   87 (145)
Q Consensus        51 ~ll~C~~C~~~~H~~Cl~~~~~~~---~~~-~~~~W~C~~C   87 (145)
                      .||.|+.|..+||..|++...++.   ..+ ....|.|+.|
T Consensus         1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C   41 (140)
T 2ku7_A            1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNC   41 (140)
T ss_dssp             CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCC
T ss_pred             CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccc
Confidence            489999999999999998864211   111 2347888877

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.32  E-value=0.0055  Score=37.75  Aligned_cols=39  Identities=18%  Similarity=0.283  Sum_probs=28.0

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      ....+..|.||...-.....+.-..|+..||..|+..++
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~   49 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWL   49 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHH
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHH
Confidence            344577999999886543444333599999999998754

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=94.13  E-value=0.0079  Score=36.48  Aligned_cols=37  Identities=24%  Similarity=0.467  Sum_probs=27.5

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      ..+..|.||...-.....+.-..|+..||..|+..++
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~   48 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWL   48 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHH
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHH
Confidence            4567899998765443445556799999999998754

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=93.85  E-value=0.0069  Score=39.16  Aligned_cols=37  Identities=19%  Similarity=0.424  Sum_probs=27.6

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      ..+..|.+|...-..+..+.-..|+..||..|+..++
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl   74 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL   74 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHH
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHH
Confidence            4567899998776443444445599999999998765

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=93.75  E-value=0.065  Score=32.95  Aligned_cols=52  Identities=19%  Similarity=0.294  Sum_probs=32.6

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      .+..+..|.+|...-....++   .|++.||..|+..++............||.|
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~C   59 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVC   59 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCC---SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSS
T ss_pred             hcccCCCCcCCCcccCCeeEC---CCCCHHHHHHHHHHHHhcccCCCCCCcCCCC
Confidence            344577899999876433332   6899999999988764321111224556644

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.55  E-value=0.033  Score=32.20  Aligned_cols=48  Identities=21%  Similarity=0.360  Sum_probs=32.0

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      ....+..|.+|...-....+   ..|+..||..|+..+....    .....||.|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~----~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVI---IECGHNFCKACITRWWEDL----ERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCC---CSSCCCCCHHHHHHHTTSS----CCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEe---CCCCCccCHHHHHHHHHhc----CCCCCCCCC
Confidence            34457789999987744333   3689999999998764321    235567754

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.39  E-value=0.0057  Score=37.89  Aligned_cols=37  Identities=22%  Similarity=0.420  Sum_probs=28.4

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      ..+..|.+|...-.....+....|+..||..|+..++
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~   57 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL   57 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHH
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHH
Confidence            3467899999876555555556699999999998764

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.06  E-value=0.046  Score=34.38  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=29.0

Q ss_pred             cccccccccccCCCCCcEecCCCCCCccccCCCCCCC
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGE   72 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~   72 (145)
                      ..+.|.||.....  .-+.|..|+..||..|+..++.
T Consensus        14 ~i~~C~IC~~~i~--~g~~C~~C~h~fH~~Ci~kWl~   48 (74)
T 2ct0_A           14 AVKICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQ   48 (74)
T ss_dssp             SSCBCSSSCCBCS--SSEECSSSCCEECHHHHHHHST
T ss_pred             CCCcCcchhhHcc--cCCccCCCCchhhHHHHHHHHH
Confidence            4578999998874  3468889999999999998764

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.90  E-value=0.028  Score=34.30  Aligned_cols=34  Identities=12%  Similarity=0.291  Sum_probs=24.6

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      ..+..|.||...-...  +.- .|+..||..|+..++
T Consensus        13 ~~~~~C~IC~~~~~~~--~~~-~CgH~fC~~Ci~~~~   46 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP--VSL-PCKHVFCYLCVKGAS   46 (71)
T ss_dssp             SSCCBCSSSSSBCSSE--EEE-TTTEEEEHHHHHHCT
T ss_pred             CCCCCCccCCcccCCC--EEc-cCCCHHHHHHHHHHH
Confidence            4567899999876322  222 599999999998764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.89  E-value=0.039  Score=34.79  Aligned_cols=37  Identities=24%  Similarity=0.556  Sum_probs=26.3

Q ss_pred             cccccccccccCCC------------CCcEecCCCCCCccccCCCCCCC
Q psy17723         36 ESDKCKACDRDTSA------------GEMIQCGKCVRYLHPACLDLPGE   72 (145)
Q Consensus        36 ~~~~C~~C~~~~~~------------~~ll~C~~C~~~~H~~Cl~~~~~   72 (145)
                      .++.|.||...-..            +..+.-..|+..||..|+..++.
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~   62 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK   62 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH
Confidence            46678888876532            22444457999999999998764

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.79  E-value=0.027  Score=35.81  Aligned_cols=48  Identities=17%  Similarity=0.223  Sum_probs=29.5

Q ss_pred             cCcccccccc-CCCceecCCc---cccccccccc--CCCCCCCCccccccccchhh
Q psy17723         89 SCVACEKAQD-DDKMLFCDLC---DRGYHNYCIG--LDKIPTVGLVFTLKKKKNKK  138 (145)
Q Consensus        89 ~C~vC~~~~~-~~~ll~Cd~C---~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~  138 (145)
                      .|.||....+ ++.++.=..|   ...||..||.  |..  .+...||.|+....-
T Consensus        17 ~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~--~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           17 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS--SDTRCCELCKYEFIM   70 (80)
T ss_dssp             CCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH--HCCSBCSSSCCBCCC
T ss_pred             CCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh--CCCCCCCCCCCeeec
Confidence            5667775433 3344431122   3899999997  432  234789999977543

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=92.35  E-value=0.092  Score=29.99  Aligned_cols=43  Identities=23%  Similarity=0.567  Sum_probs=28.5

Q ss_pred             cCccccccccC-CCceecCCccccccccccc--CCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQDD-DKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~-~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~  135 (145)
                      .|.+|...... +..+.-..|+..||..|+.  +..    ...||.|+..
T Consensus         7 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~   52 (55)
T 1iym_A            7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT   52 (55)
T ss_dssp             CCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred             cCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence            46677764332 3344445799999999996  332    3579999864

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.01  E-value=0.091  Score=33.00  Aligned_cols=43  Identities=14%  Similarity=0.240  Sum_probs=30.5

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~  135 (145)
                      .|.||...-.  .-+.|..|...||..|+.  +....  .=.||.|+..
T Consensus        17 ~C~IC~~~i~--~g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~   61 (74)
T 2ct0_A           17 ICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDY   61 (74)
T ss_dssp             BCSSSCCBCS--SSEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSC
T ss_pred             cCcchhhHcc--cCCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCc
Confidence            6778876543  235788999999999997  54332  2579998754

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.83  E-value=0.048  Score=33.12  Aligned_cols=37  Identities=19%  Similarity=0.310  Sum_probs=26.7

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCCCC
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGE   72 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~   72 (145)
                      .+..+..|.+|...-..  .+. ..|++.||..|+..++.
T Consensus        16 ~~~~~~~C~IC~~~~~~--~~~-~~CgH~fC~~Ci~~~~~   52 (73)
T 2ysl_A           16 KLQEEVICPICLDILQK--PVT-IDCGHNFCLKCITQIGE   52 (73)
T ss_dssp             CCCCCCBCTTTCSBCSS--EEE-CTTCCEEEHHHHHHHCS
T ss_pred             hCccCCEeccCCcccCC--eEE-cCCCChhhHHHHHHHHH
Confidence            44567799999987632  222 28999999999987653

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.54  E-value=0.035  Score=32.91  Aligned_cols=48  Identities=19%  Similarity=0.345  Sum_probs=31.5

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      .+..+..|.+|...-... .+.  .|+..||..|+..++..    ......||.|
T Consensus        16 ~~~~~~~C~IC~~~~~~p-~~~--~CgH~fC~~Ci~~~~~~----~~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKP-VTI--DCGHNFCLKCITQIGET----SCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSC-EEC--TTSSEECHHHHHHHHHH----CSSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCe-EEe--CCCCcchHHHHHHHHHc----CCCCCcCcCC
Confidence            445678999999876432 222  79999999999775421    1234567754

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.23  E-value=0.038  Score=33.99  Aligned_cols=44  Identities=18%  Similarity=0.460  Sum_probs=29.7

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccch
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKN  136 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~  136 (145)
                      .|.||.........+..-.|...||..|+.  +..    ...||.|+..-
T Consensus        25 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~   70 (75)
T 1x4j_A           25 LCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADS   70 (75)
T ss_dssp             EETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCC
T ss_pred             CCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcC
Confidence            566777654444444445699999999997  322    24799998653

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.10  E-value=0.017  Score=34.62  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             CCccccccccccccCCC----CCcEecCCCCCCccccCCCCCC
Q psy17723         33 PVPESDKCKACDRDTSA----GEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~----~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      ....+..|.||...-..    ...+.-..|+..||..|+..++
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~   53 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL   53 (69)
T ss_dssp             CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHH
T ss_pred             CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHH
Confidence            34557789999886421    2444556899999999997754

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=90.96  E-value=0.027  Score=40.66  Aligned_cols=50  Identities=28%  Similarity=0.642  Sum_probs=37.3

Q ss_pred             ccccccccccccCCCCCcEecC--CCCCCccccCCCCCCCC--CCc-CCCCccccccc
Q psy17723         35 PESDKCKACDRDTSAGEMIQCG--KCVRYLHPACLDLPGEM--LPH-MKLYDWQCSDC   87 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~--~C~~~~H~~Cl~~~~~~--~~~-~~~~~W~C~~C   87 (145)
                      ..+..|.+|++++   +|+.|+  .|.+.|-..||......  ... .....|.|--|
T Consensus        77 G~~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C  131 (159)
T 3a1b_A           77 GYQSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMC  131 (159)
T ss_dssp             SSBSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTT
T ss_pred             CCcceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEec
Confidence            3567899999998   999999  79999999998664432  111 35679966544

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.88  E-value=0.048  Score=32.64  Aligned_cols=35  Identities=17%  Similarity=0.365  Sum_probs=25.7

Q ss_pred             CccccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         34 VPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        34 ~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      ...+..|.+|...-....+   ..|+..||..|+..++
T Consensus        12 ~~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~   46 (66)
T 2ecy_A           12 VEDKYKCEKCHLVLCSPKQ---TECGHRFCESCMAALL   46 (66)
T ss_dssp             CCCCEECTTTCCEESSCCC---CSSSCCCCHHHHHHHH
T ss_pred             CCcCCCCCCCChHhcCeeE---CCCCCHHHHHHHHHHH
Confidence            3457789999887643333   3789999999998754

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=90.81  E-value=0.034  Score=31.88  Aligned_cols=36  Identities=22%  Similarity=0.381  Sum_probs=27.1

Q ss_pred             cccccccccccCC-CCCcEecCCCCCCccccCCCCCC
Q psy17723         36 ESDKCKACDRDTS-AGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        36 ~~~~C~~C~~~~~-~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      .+..|.+|.+.-. .+..+.-..|+..||..|+..++
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~   40 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEML   40 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHH
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHH
Confidence            3678999988753 24456667799999999997654

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=90.80  E-value=0.078  Score=30.25  Aligned_cols=43  Identities=16%  Similarity=0.233  Sum_probs=29.0

Q ss_pred             cCccccccc-cCCCceecCCccccccccccc--CCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQ-DDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~-~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~  135 (145)
                      .|.||...- +.+..+.--.|+..||..|+.  +...    ..||.|+..
T Consensus         7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~   52 (55)
T 2ecm_A            7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP   52 (55)
T ss_dssp             SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred             cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence            466777643 233455666799999999996  3221    679999764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.63  E-value=0.049  Score=34.32  Aligned_cols=45  Identities=16%  Similarity=0.494  Sum_probs=28.8

Q ss_pred             cCccccccccCC-CceecCCccccccccccc--CCCCCCCCccccccccchh
Q psy17723         89 SCVACEKAQDDD-KMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~~~-~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~  137 (145)
                      .|.+|......+ ..+.-..|...||..|+.  +...    -.||.|+..-.
T Consensus        28 ~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~~~   75 (81)
T 2ecl_A           28 ACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN----NRCPLCQQDWV   75 (81)
T ss_dssp             CCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC----CBCTTTCCBCC
T ss_pred             cCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC----CCCCCcCCCcc
Confidence            455555432222 234444799999999997  5432    28999997644

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=90.60  E-value=0.17  Score=31.08  Aligned_cols=45  Identities=18%  Similarity=0.328  Sum_probs=28.6

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~  137 (145)
                      .|.||.........+.--.|...||..|+.  +..    ...||.|+..-.
T Consensus        17 ~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~   63 (78)
T 2ect_A           17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSLT   63 (78)
T ss_dssp             CCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCCC
T ss_pred             CCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCccC
Confidence            455776543333333333599999999986  322    258999987644

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=90.51  E-value=0.062  Score=32.31  Aligned_cols=45  Identities=13%  Similarity=0.277  Sum_probs=28.7

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~  137 (145)
                      .|.||......+..+.--.|+..||..|+.  +..    ...||.|+..-.
T Consensus        16 ~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~   62 (69)
T 2kiz_A           16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDIE   62 (69)
T ss_dssp             SBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBSC
T ss_pred             CCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCcccc
Confidence            455776543333344445699999999996  322    235999987643

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}

Probab=90.13  E-value=0.3  Score=35.12  Aligned_cols=96  Identities=21%  Similarity=0.299  Sum_probs=56.1

Q ss_pred             cccccccccccCCCCCcEecCCCCCCccccCCCCC-----CCCCCcCCCCccccccc------ccCccccccccCCCcee
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLP-----GEMLPHMKLYDWQCSDC------KSCVACEKAQDDDKMLF  104 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~-----~~~~~~~~~~~W~C~~C------~~C~vC~~~~~~~~ll~  104 (145)
                      ....|..|+..-....++.-  -++.||..|+.=.     +....-...+..+|..|      ..|..|++.-.+..+++
T Consensus        59 ~~~~C~~C~~~I~~~~~~~a--~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~  136 (182)
T 2jtn_A           59 EIPMCAGCDQHILDRFILKA--LDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVR  136 (182)
T ss_dssp             SCCBCBTSSSBCCCSEEEEE--TTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCC
T ss_pred             CCCcCccCCCCccCceeEEe--cCCeEccccCccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCCCceEE
Confidence            45789999987654333332  3778888765321     21111123456778766      27999998654333221


Q ss_pred             cCCccccccccccc-------CC------CCCCCCcccccccc
Q psy17723        105 CDLCDRGYHNYCIG-------LD------KIPTVGLVFTLKKK  134 (145)
Q Consensus       105 Cd~C~~~yH~~Cl~-------l~------~~p~~~W~C~~C~~  134 (145)
                       ..=++.||..|..       |.      .+.++..+|..|-.
T Consensus       137 -~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~  178 (182)
T 2jtn_A          137 -RAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE  178 (182)
T ss_dssp             -EETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHH
T ss_pred             -ecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHH
Confidence             2346788988863       32      12356788887764

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.13  E-value=0.055  Score=33.00  Aligned_cols=37  Identities=11%  Similarity=0.231  Sum_probs=27.2

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      .+..+..|.+|...-.  +.+.-..|++.||..|+..++
T Consensus        11 ~~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~   47 (72)
T 2djb_A           11 ELTPYILCSICKGYLI--DATTITECLHTFCKSCIVRHF   47 (72)
T ss_dssp             CCCGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHH
T ss_pred             hcCCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHH
Confidence            4456789999987663  344445799999999997654

>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=89.97  E-value=0.23  Score=32.11  Aligned_cols=33  Identities=18%  Similarity=0.409  Sum_probs=27.0

Q ss_pred             CceecCCcc-cccccccccCCCCCCCCcccccccc
Q psy17723        101 KMLFCDLCD-RGYHNYCIGLDKIPTVGLVFTLKKK  134 (145)
Q Consensus       101 ~ll~Cd~C~-~~yH~~Cl~l~~~p~~~W~C~~C~~  134 (145)
                      .||+|..|+ .+-|..|..+.. ....|.|..|+.
T Consensus        45 ~L~lC~~Cgs~gtH~~Cs~l~~-~~~~weC~~C~~   78 (85)
T 1weq_A           45 RLILCATCGSHGTHRDCSSLRP-NSKKWECNECLP   78 (85)
T ss_dssp             BCEECSSSCCCEECSGGGTCCT-TCSCCCCTTTSC
T ss_pred             EEEeCcccCCchhHHHHhCCcC-CCCCEECCcCcc
Confidence            678899998 589999998754 345699999984

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=89.77  E-value=0.13  Score=34.09  Aligned_cols=46  Identities=20%  Similarity=0.353  Sum_probs=31.0

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      ....+..|.+|...-.....+   .|++.|+..|+..++.      .....||.|
T Consensus        11 ~~~~~~~C~iC~~~~~~p~~~---~CgH~fC~~Ci~~~~~------~~~~~CP~C   56 (115)
T 3l11_A           11 PSLSECQCGICMEILVEPVTL---PCNHTLCKPCFQSTVE------KASLCCPFC   56 (115)
T ss_dssp             CCHHHHBCTTTCSBCSSCEEC---TTSCEECHHHHCCCCC------TTTSBCTTT
T ss_pred             CCCCCCCCccCCcccCceeEc---CCCCHHhHHHHHHHHh------HCcCCCCCC
Confidence            345577899999776322222   7999999999987653      124556655

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=89.77  E-value=0.013  Score=35.27  Aligned_cols=36  Identities=19%  Similarity=0.508  Sum_probs=24.5

Q ss_pred             cccccccccccCCCCCcEecCCCC---CCccccCCCCCCC
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGKCV---RYLHPACLDLPGE   72 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~C~---~~~H~~Cl~~~~~   72 (145)
                      ..+.|.||...++.+.++-| .|.   +.||..||..|+.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~   43 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRAC-GCTGELENVHRSCLSTWLT   43 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSC-CCSSGGGSCCHHHHHHHHH
T ss_pred             CCCEeEEeecCCCCceecCc-CCCCchhhhHHHHHHHHHH
Confidence            46789999887543333333 344   4999999998753

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=89.51  E-value=0.091  Score=33.68  Aligned_cols=43  Identities=16%  Similarity=0.282  Sum_probs=27.7

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~  135 (145)
                      .|.||......+..+.--.|+..||..|+.  +..    .-.||.|+..
T Consensus        42 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~   86 (91)
T 2l0b_A           42 CCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCM   86 (91)
T ss_dssp             EETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCB
T ss_pred             CCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCcc
Confidence            456776543333333334599999999997  432    2489999865

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=89.13  E-value=0.095  Score=32.17  Aligned_cols=37  Identities=16%  Similarity=0.396  Sum_probs=26.7

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      .+..+..|.+|...-.  +-+.-..|++.||..|+..++
T Consensus        11 ~~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~   47 (74)
T 2yur_A           11 PIPDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTAL   47 (74)
T ss_dssp             CSCGGGSCSSSCCCCT--TCEECSSSCCEECTTHHHHHH
T ss_pred             cCCCCCCCcCCChHHh--CCeEcCCCCCHHHHHHHHHHH
Confidence            4556789999987663  333433489999999997754

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=88.91  E-value=0.076  Score=32.88  Aligned_cols=36  Identities=19%  Similarity=0.373  Sum_probs=25.3

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      .+..+..|.+|...-...  +. ..|++.||..|+..++
T Consensus        15 ~~~~~~~C~IC~~~~~~p--~~-~~CgH~fC~~Ci~~~~   50 (85)
T 2ecw_A           15 MIKEEVTCPICLELLKEP--VS-ADCNHSFCRACITLNY   50 (85)
T ss_dssp             CCCTTTSCTTTCSCCSSC--EE-CTTSCCBCHHHHHHHH
T ss_pred             hCccCCCCcCCChhhCcc--ee-CCCCCHHHHHHHHHHH
Confidence            345577899998876322  22 3589999999987643

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.86  E-value=0.094  Score=31.94  Aligned_cols=44  Identities=20%  Similarity=0.315  Sum_probs=27.8

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccch
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKN  136 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~  136 (145)
                      .|.||.........+.--.|...||..|+.  +..    ...||.|+..-
T Consensus        17 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~~   62 (74)
T 2ep4_A           17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMPV   62 (74)
T ss_dssp             BCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----CSBCTTTCCBC
T ss_pred             CCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----CCcCCCcCccc
Confidence            566777654333333223599999999996  322    13799998753

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=88.55  E-value=0.092  Score=35.84  Aligned_cols=37  Identities=19%  Similarity=0.365  Sum_probs=1.0

Q ss_pred             cccccccccccCCC---------------CCcEecCCCCCCccccCCCCCCC
Q psy17723         36 ESDKCKACDRDTSA---------------GEMIQCGKCVRYLHPACLDLPGE   72 (145)
Q Consensus        36 ~~~~C~~C~~~~~~---------------~~ll~C~~C~~~~H~~Cl~~~~~   72 (145)
                      .++.|.||...-..               +..+.-..|+..||..|+..++.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~   98 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK   98 (117)
T ss_dssp             CC--------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH
Confidence            46899999876521               11222246999999999999864

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.14  E-value=0.16  Score=30.66  Aligned_cols=46  Identities=15%  Similarity=0.272  Sum_probs=29.1

Q ss_pred             cCccccccccCCCceecCCccccccccccc-CCCCCCCCccccccccchh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG-LDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~-l~~~p~~~W~C~~C~~~~~  137 (145)
                      .|.||..... +.+++  .|+..||..|+. .-....+...||.|+..-.
T Consensus        22 ~C~IC~~~~~-~~~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           22 ICPICLDILQ-KPVTI--DCGHNFCLKCITQIGETSCGFFKCPLCKTSVR   68 (73)
T ss_dssp             BCTTTCSBCS-SEEEC--TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred             EeccCCcccC-CeEEc--CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence            4556665432 22333  899999999987 2222245678999987654

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=87.96  E-value=0.054  Score=35.93  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=25.6

Q ss_pred             cccccccccccCCC---------------CCcEecCCCCCCccccCCCCCC
Q psy17723         36 ESDKCKACDRDTSA---------------GEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        36 ~~~~C~~C~~~~~~---------------~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      .++.|.||...-..               ...+.-..|+..||..||..++
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl   74 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY   74 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHH
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHH
Confidence            35689999876422               1233356789999999998765

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=87.80  E-value=0.068  Score=35.74  Aligned_cols=37  Identities=19%  Similarity=0.365  Sum_probs=26.3

Q ss_pred             cccccccccccCCC---------------CCcEecCCCCCCccccCCCCCCC
Q psy17723         36 ESDKCKACDRDTSA---------------GEMIQCGKCVRYLHPACLDLPGE   72 (145)
Q Consensus        36 ~~~~C~~C~~~~~~---------------~~ll~C~~C~~~~H~~Cl~~~~~   72 (145)
                      .++.|.||...-..               +..+.-..|+..||..|+..++.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~   87 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK   87 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH
Confidence            46789999876432               12244457999999999988753

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=87.64  E-value=0.043  Score=32.98  Aligned_cols=46  Identities=13%  Similarity=0.274  Sum_probs=28.9

Q ss_pred             cCccccccccCCCceecCCcc---ccccccccc--CCCCCCCCccccccccchh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCD---RGYHNYCIG--LDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~---~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~  137 (145)
                      .|.||...+++ .++.=..|.   ++||..||.  +..  .+.+.|+.|.....
T Consensus         8 ~CrIC~~~~~~-~l~~PC~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            8 VCWICNEELGN-ERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGVVYN   58 (60)
T ss_dssp             EETTTTEECSC-CCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCBCC
T ss_pred             EeEEeecCCCC-ceecCcCCCCchhhhHHHHHHHHHHh--CCCCccCCCCCeee
Confidence            56677654433 343322454   599999997  432  23589999987654

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.15  E-value=0.11  Score=31.29  Aligned_cols=34  Identities=15%  Similarity=0.398  Sum_probs=25.4

Q ss_pred             CccccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         34 VPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        34 ~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      ...+..|.+|......    .-..|+..||..|+..++
T Consensus        12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~   45 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWS   45 (70)
T ss_dssp             CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSS
T ss_pred             CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHH
Confidence            3456789999987643    234689999999998764

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.83  E-value=0.18  Score=31.45  Aligned_cols=39  Identities=15%  Similarity=0.290  Sum_probs=26.9

Q ss_pred             CCccccccccccccCCCCCc-EecCCCCCCccccCCCCCC
Q psy17723         33 PVPESDKCKACDRDTSAGEM-IQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~l-l~C~~C~~~~H~~Cl~~~~   71 (145)
                      .......|.+|...-..... ..=..|+..||..|+..++
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~   50 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLL   50 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHH
T ss_pred             hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHH
Confidence            34557789999987644221 2223699999999997754

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=85.76  E-value=0.2  Score=33.11  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=24.2

Q ss_pred             cCCccccccccccc--CCCC-CCCCccccccccchhh
Q psy17723        105 CDLCDRGYHNYCIG--LDKI-PTVGLVFTLKKKKNKK  138 (145)
Q Consensus       105 Cd~C~~~yH~~Cl~--l~~~-p~~~W~C~~C~~~~~~  138 (145)
                      --.|...||..|+.  +... ....-.||.|+.....
T Consensus        58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            56799999999997  4221 2346789999976543

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=85.36  E-value=0.11  Score=42.49  Aligned_cols=50  Identities=22%  Similarity=0.542  Sum_probs=37.1

Q ss_pred             ccccccccccccCCCCCcEecC--CCCCCccccCCCCCCCC--CCc-CCCCccccccc
Q psy17723         35 PESDKCKACDRDTSAGEMIQCG--KCVRYLHPACLDLPGEM--LPH-MKLYDWQCSDC   87 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~--~C~~~~H~~Cl~~~~~~--~~~-~~~~~W~C~~C   87 (145)
                      ..+..|.+|++++   +|+.|+  .|.+.|-..|+......  ... .....|.|--|
T Consensus        91 G~~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C  145 (386)
T 2pv0_B           91 GYQSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLC  145 (386)
T ss_dssp             SSBCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTT
T ss_pred             CCcccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEc
Confidence            4577899999988   999999  89999999998764421  111 23478966655

>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}

Probab=84.13  E-value=0.36  Score=31.11  Aligned_cols=29  Identities=21%  Similarity=0.628  Sum_probs=22.4

Q ss_pred             cCccccccccCCCceecCC--ccccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDL--CDRGYHNYCIG  118 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~--C~~~yH~~Cl~  118 (145)
                      .|.+|++.+ .+--|.|..  |..+||+.|..
T Consensus        19 ~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~   49 (87)
T 2lq6_A           19 TCYLCKQKG-VGASIQCHKANCYTAFHVTCAQ   49 (87)
T ss_dssp             CBTTTTBCC-SSCEEECSCTTTCCEEEHHHHH
T ss_pred             CCcCCCCCC-CcEeEecCCCCCCCcCcHHHHH
Confidence            677887642 357788975  99999999983

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.93  E-value=0.41  Score=28.32  Aligned_cols=43  Identities=16%  Similarity=0.308  Sum_probs=27.7

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~  137 (145)
                      .|.+|...-....+   -.|+..||..|+.  +.   .+...||.|+..-.
T Consensus        17 ~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~   61 (66)
T 2ecy_A           17 KCEKCHLVLCSPKQ---TECGHRFCESCMAALLS---SSSPKCTACQESIV   61 (66)
T ss_dssp             ECTTTCCEESSCCC---CSSSCCCCHHHHHHHHT---TSSCCCTTTCCCCC
T ss_pred             CCCCCChHhcCeeE---CCCCCHHHHHHHHHHHH---hCcCCCCCCCcCCC
Confidence            44466654322222   3799899999986  43   34568999987644

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=83.18  E-value=0.12  Score=30.81  Aligned_cols=34  Identities=18%  Similarity=0.344  Sum_probs=24.8

Q ss_pred             cccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      .+..|.+|.....  +...-..|+..||..|+..+.
T Consensus         4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~   37 (68)
T 1chc_A            4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWI   37 (68)
T ss_dssp             CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHH
T ss_pred             CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHH
Confidence            4668999988763  223445699999999997653

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.13  E-value=0.22  Score=30.83  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=24.6

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      .....|.+|...-..  .+. ..|++.||..|+..++
T Consensus        13 ~~~~~C~IC~~~~~~--p~~-~~CgH~fC~~Ci~~~~   46 (81)
T 2csy_A           13 EIPFRCFICRQAFQN--PVV-TKCRHYFCESCALEHF   46 (81)
T ss_dssp             CCCSBCSSSCSBCCS--EEE-CTTSCEEEHHHHHHHH
T ss_pred             CCCCCCcCCCchhcC--eeE-ccCCCHhHHHHHHHHH
Confidence            346689999887632  222 5799999999997654

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.00  E-value=0.65  Score=26.42  Aligned_cols=40  Identities=15%  Similarity=0.446  Sum_probs=24.7

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCcccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLK  132 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C  132 (145)
                      .|.||...-....++   .|+..||..|+.  +... .....||.|
T Consensus        17 ~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~-~~~~~CP~C   58 (58)
T 2ecj_A           17 SCSVCLEYLKEPVII---ECGHNFCKACITRWWEDL-ERDFPCPVC   58 (58)
T ss_dssp             BCSSSCCBCSSCCCC---SSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred             CCccCCcccCccEeC---CCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence            455776644333333   688889999986  3322 345778876

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=81.69  E-value=0.45  Score=31.64  Aligned_cols=30  Identities=23%  Similarity=0.525  Sum_probs=22.9

Q ss_pred             eecCCccccccccccc--CCCCCCCCccccccccch
Q psy17723        103 LFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKN  136 (145)
Q Consensus       103 l~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~  136 (145)
                      +.--.|...||..|+.  |..    .-.||.|+..-
T Consensus        68 ~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~   99 (106)
T 3dpl_R           68 VAWGVCNHAFHFHCISRWLKT----RQVCPLDNREW   99 (106)
T ss_dssp             EEEETTSCEEEHHHHHHHHTT----CSBCSSSCSBC
T ss_pred             EeecccCcEECHHHHHHHHHc----CCcCcCCCCcc
Confidence            4445799999999997  543    35799999873

>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}

Probab=81.13  E-value=0.5  Score=30.39  Aligned_cols=30  Identities=30%  Similarity=0.665  Sum_probs=24.6

Q ss_pred             cccccccccc--CCCCCcEecCC--CCCCccccCCCC
Q psy17723         37 SDKCKACDRD--TSAGEMIQCGK--CVRYLHPACLDL   69 (145)
Q Consensus        37 ~~~C~~C~~~--~~~~~ll~C~~--C~~~~H~~Cl~~   69 (145)
                      ...|.+|+..  |   ..|.|..  |..+||+.|+..
T Consensus        17 ~l~C~iC~~~~~G---AciqC~~~~C~~~fHv~CA~~   50 (87)
T 2lq6_A           17 KLTCYLCKQKGVG---ASIQCHKANCYTAFHVTCAQK   50 (87)
T ss_dssp             CCCBTTTTBCCSS---CEEECSCTTTCCEEEHHHHHH
T ss_pred             cCCCcCCCCCCCc---EeEecCCCCCCCcCcHHHHHH
Confidence            4589999864  6   8899965  999999999754

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=81.00  E-value=0.66  Score=35.24  Aligned_cols=45  Identities=13%  Similarity=0.159  Sum_probs=31.5

Q ss_pred             cCccccccccCCCceecCCcccccccccccCCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~  135 (145)
                      .|.+|...-.  .-..|..|...||..|+..-....+.-.||.|...
T Consensus       182 ~C~iC~~iv~--~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~  226 (238)
T 3nw0_A          182 ICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY  226 (238)
T ss_dssp             BCTTTCSBCS--SCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred             cCcchhhHHh--CCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence            7888887543  33789999999999999721112345678888653

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.83  E-value=1.4  Score=26.90  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=25.1

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCC
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLP   70 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~   70 (145)
                      .+..+..|.+|...-....++   .|++.||..|+..+
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~   49 (85)
T 2ecv_A           15 NVKEEVTCPICLELLTQPLSL---DCGHSFCQACLTAN   49 (85)
T ss_dssp             CCCCCCCCTTTCSCCSSCBCC---SSSCCBCTTHHHHH
T ss_pred             HccCCCCCCCCCcccCCceeC---CCCCHHHHHHHHHH
Confidence            344577899999876432222   68999999998764

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=80.73  E-value=0.52  Score=30.72  Aligned_cols=44  Identities=18%  Similarity=0.312  Sum_probs=27.4

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccch
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKN  136 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~  136 (145)
                      .|.+|...-....++   .|+..||..|+.  +. ...+...||.|+..-
T Consensus        23 ~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~-~~~~~~~CP~Cr~~~   68 (112)
T 1jm7_A           23 ECPICLELIKEPVST---KCDHIFCKFCMLKLLN-QKKGPSQCPLCKNDI   68 (112)
T ss_dssp             SCSSSCCCCSSCCBC---TTSCCCCSHHHHHHHH-SSSSSCCCTTTSCCC
T ss_pred             CCcccChhhcCeEEC---CCCCHHHHHHHHHHHH-hCCCCCCCcCCCCcC
Confidence            455676543222222   688889999986  32 223457899998753

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A

Probab=80.48  E-value=1.7  Score=30.66  Aligned_cols=97  Identities=21%  Similarity=0.296  Sum_probs=57.7

Q ss_pred             ccccccccccCCCCCcEecCCCCCCccccCCCC-----CCCCCCcCCCCcccccccc------cCccccccccCCCceec
Q psy17723         37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDL-----PGEMLPHMKLYDWQCSDCK------SCVACEKAQDDDKMLFC  105 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~-----~~~~~~~~~~~~W~C~~C~------~C~vC~~~~~~~~ll~C  105 (145)
                      ...|..|+..-....+|.-  -++.||..|+.=     ++....-..++..+|..|-      .|..|++.-.+..+++ 
T Consensus         6 ~~~C~~C~~~I~~~~~~~a--~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~-   82 (169)
T 2rgt_A            6 IPMCAGCDQHILDRFILKA--LDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVR-   82 (169)
T ss_dssp             -CBBSSSSSBCCSSSCEEC--SSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEE-
T ss_pred             CCccccCCCccCCcEEEEE--CCcEEccccCccCCCCCcCCCCCcccCCeeeecccccccccccccccccccCCCcEEE-
Confidence            4689999887654444432  377888776432     1111111245677887773      7999998654443332 


Q ss_pred             CCccccccccccc-------CC------CCCCCCccccccccch
Q psy17723        106 DLCDRGYHNYCIG-------LD------KIPTVGLVFTLKKKKN  136 (145)
Q Consensus       106 d~C~~~yH~~Cl~-------l~------~~p~~~W~C~~C~~~~  136 (145)
                      ..=++.||..|..       |.      .+.++..+|..|..+.
T Consensus        83 ~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~  126 (169)
T 2rgt_A           83 RAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA  126 (169)
T ss_dssp             EETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHH
T ss_pred             EcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHH
Confidence            2346788988863       32      1235678998887544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d1fp0a1	70	g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-	3e-05
d1fp0a1	70	g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-	0.002
d1wema_	76	g.50.1.2 (A:) Death associated transcription facto	6e-05
d1wema_	76	g.50.1.2 (A:) Death associated transcription facto	0.003
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	8e-05
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	0.001
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	3e-04
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	0.001
d1weea_	72	g.50.1.2 (A:) PHD finger protein At1g33420 {Thale	3e-04
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	0.002
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	0.002

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 3e-05
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 38  DKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQ 97
           D    C      G+++ C +C    H  C     + +P     +W CS C      ++  
Sbjct: 5   DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPG---EEWSCSLCHVLPDLKEED 61

Query: 98  DDDK 101
            D +
Sbjct: 62  VDLQ 65

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (74), Expect = 0.002
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 89  SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIP 123
           S   C   Q    ++ C+ C+  +H  C    L  +P
Sbjct: 6   SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVP 42

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (85), Expect = 6e-05
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 81  DWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
           +    +   C+ C +  ++  M+ CD C+  +H  C+G+ +  
Sbjct: 10  EVYDPNALYCI-CRQPHNNRFMICCDRCEEWFHGDCVGISEAR 51

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.7 bits (74), Expect = 0.003
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 43 CDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKL--YDWQCSDCK 88
          C +  +   MI C +C  + H  C+ +       ++    D+ C +C 
Sbjct: 21 CRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 8e-05
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSC 90
          +CK C +     ++I C +C +  H  CL      +P     +WQC  C+  
Sbjct: 2  RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPD---GEWQCPACQPA 50

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (75), Expect = 0.001
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 90  CVACEKAQDDDKMLFCDLCDRGYHNYC--IGLDKIPT 124
           C  C K  +DDK++ CD C++ +H +C    L ++P 
Sbjct: 3   CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPD 39

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 36 ESDKCKACDR-DTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
           S +C AC     +    I C  C  + H  C+ +      H+K   ++C  C +
Sbjct: 5  SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIK--QYKCPSCSN 57

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.5 bits (76), Expect = 0.001
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 84  CSDCKSCVACEKAQDDDK-MLFCDLCDRGYHNYCIGLDK 121
                 C AC ++   D+  + CDLC+  +H  C+ +  
Sbjct: 3   SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITP 41

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 90  CVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
           C    K  D ++ML CD C   +H  CIG++   
Sbjct: 19  CKCGTKDDDGERMLACDGCGVWHHTRCIGINNAD 52

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (74), Expect = 0.002
 Identities = 11/50 (22%), Positives = 18/50 (36%)

Query: 93  CEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKKKKKK 142
           C   +D  ++L CD C   YH +C+           +   +      K K
Sbjct: 12  CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 61

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (74), Expect = 0.002
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVA 92
          P+      + C      GE++ C  C    H  CL+ P   +P+    +W C  C     
Sbjct: 2  PLGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPN---GEWLCPRCTCPAL 58

Query: 93 CEK 95
            K
Sbjct: 59 KGK 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	99.46
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	99.35
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	99.34
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	99.24
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	99.23
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	99.21
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	99.16
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	99.12
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	99.12
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	98.9
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	98.9
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	98.87
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	98.84
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	98.76
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	98.74
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	98.66
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	98.39
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	98.37
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	98.33
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	98.31
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	98.17
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	98.15
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	96.58
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	96.42
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	95.66
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	95.36
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	94.84
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	94.13
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	91.97
d1weqa_	85	PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculu	91.44
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	91.33
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	91.32
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	88.27
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	88.04
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	88.02
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	86.94
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	86.63
d1s3ga2	35	Microbial and mitochondrial ADK, insert "zinc fing	85.37
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	84.68
d1e4va2	35	Microbial and mitochondrial ADK, insert "zinc fing	83.51
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	83.26
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	81.78
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	81.53

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.1e-15  Score=86.21  Aligned_cols=46  Identities=28%  Similarity=0.769  Sum_probs=42.1

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCcccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKK  134 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~  134 (145)
                      .|.+|+..++++.||+||.|+++||++|++  +..+|++.|+|+.|+.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            588999888889999999999999999997  6788999999999975

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.2e-13  Score=85.27  Aligned_cols=48  Identities=21%  Similarity=0.495  Sum_probs=41.2

Q ss_pred             ccccCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccch
Q psy17723         86 DCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKN  136 (145)
Q Consensus        86 ~C~~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~  136 (145)
                      .|.+|.+|++   ++.||+||.|+++||+.|++  +..+|++.|+|+.|....
T Consensus         6 ~c~~C~~C~~---~~~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   55 (70)
T d1fp0a1           6 SATICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   55 (70)
T ss_dssp             SSSCCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             CCCCCCCCCC---cCEEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcC
Confidence            3557888886   46799999999999999998  788999999999997654

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.5e-13  Score=82.78  Aligned_cols=47  Identities=28%  Similarity=0.584  Sum_probs=39.9

Q ss_pred             cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchhh
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKK  138 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~  138 (145)
                      +|.+|++   ++.||+||.|+++||+.|++  +..+|++.|+|+.|+....|
T Consensus        11 ~C~~C~~---~g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~k   59 (61)
T d1mm2a_          11 FCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK   59 (61)
T ss_dssp             SCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred             CCcCCCC---CCeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcccC
Confidence            5777875   56899999999999999997  77788999999999765544

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=99.24  E-value=9.8e-13  Score=77.41  Aligned_cols=45  Identities=22%  Similarity=0.423  Sum_probs=38.5

Q ss_pred             cCccccccccCCCceecCC---cccccccccccCCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDL---CDRGYHNYCIGLDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~---C~~~yH~~Cl~l~~~p~~~W~C~~C~~~  135 (145)
                      +| +|++..+ +.||.|+.   |..|||+.|++|+.+|.+.|+|+.|+++
T Consensus         4 yC-~C~~~~~-~~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~k   51 (51)
T d2pnxa1           4 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE   51 (51)
T ss_dssp             ET-TTTEECC-SEEEECSCTTCSSCEEEGGGGTCSSCCSSCCCCHHHHCC
T ss_pred             EE-EcCCCCC-CCEEEEecCCCCCCCEeCCccCCCcCCCCcEECcCCCCc
Confidence            67 7887664 45999987   5789999999999999999999999864

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.7e-12  Score=76.14  Aligned_cols=49  Identities=27%  Similarity=0.733  Sum_probs=42.5

Q ss_pred             ccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccC
Q psy17723         39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSC   90 (145)
Q Consensus        39 ~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C   90 (145)
                      .|.+|+..++.+.||.|+.|..+||..|+++++.   .++++.|+|+.|+.+
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~---~~p~~~W~C~~C~~~   50 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALY---EVPDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC---SCCSSCCSCTTTSCC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCC---cCCCCCEECcCCcCc
Confidence            5899999988899999999999999999999864   345679999988754

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=8.3e-13  Score=85.80  Aligned_cols=56  Identities=20%  Similarity=0.447  Sum_probs=42.4

Q ss_pred             cCccccccc--cCCCceecCCcccccccccccC------CCCCCCCccccccccchhhhhhccC
Q psy17723         89 SCVACEKAQ--DDDKMLFCDLCDRGYHNYCIGL------DKIPTVGLVFTLKKKKNKKKKKKKK  144 (145)
Q Consensus        89 ~C~vC~~~~--~~~~ll~Cd~C~~~yH~~Cl~l------~~~p~~~W~C~~C~~~~~~~~~~~~  144 (145)
                      +|.+|++..  +.+.||.|+.|.++||..|+++      ..+|++.|+|+.|...+++++.+++
T Consensus        18 ~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~~~~~~~~   81 (88)
T d1weva_          18 ACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKNQ   81 (88)
T ss_dssp             SCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTCCC
T ss_pred             CccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHhhhhhccC
Confidence            577887643  2457899999999999999972      2467889999999977665544433

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=6.3e-12  Score=78.71  Aligned_cols=48  Identities=19%  Similarity=0.424  Sum_probs=37.5

Q ss_pred             cCccccccccCCCceec--CCcc-cccccccccCCCCCCCCccccccccchhh
Q psy17723         89 SCVACEKAQDDDKMLFC--DLCD-RGYHNYCIGLDKIPTVGLVFTLKKKKNKK  138 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~C--d~C~-~~yH~~Cl~l~~~p~~~W~C~~C~~~~~~  138 (145)
                      +| ||++..+ +.||+|  +.|. .|||+.||+|+.+|.+.|+|+.|+.++.+
T Consensus        18 ~C-iC~~~~~-~~~i~c~~~~C~~~wfH~~Cvgl~~~p~~~w~C~~C~~~~gp   68 (71)
T d1wesa_          18 YC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGDSGP   68 (71)
T ss_dssp             CS-TTCCCCC-SSEECCSCTTCSCCCEETTTTTCSSCCSSCCCCTTTSSCCSC
T ss_pred             EE-EeCCCCC-CCEEEEECCCCCCcCccCccCCCCcCCCCcEECcCCccccCc
Confidence            56 7887654 445554  5675 69999999999999999999999876544

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.9e-11  Score=74.71  Aligned_cols=53  Identities=19%  Similarity=0.556  Sum_probs=42.2

Q ss_pred             cccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCcccc
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE   94 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~   94 (145)
                      +..+|.+|+..+   +||.|+.|.++||+.|+++++.   .++.+.|+|+.|.......
T Consensus         6 ~c~~C~~C~~~~---~ll~Cd~C~~~~H~~C~~p~l~---~~p~~~W~C~~C~~~~~~~   58 (70)
T d1fp0a1           6 SATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQ---DVPGEEWSCSLCHVLPDLK   58 (70)
T ss_dssp             SSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCC---CCCSSSCCCCSCCCCCSSC
T ss_pred             CCCCCCCCCCcC---EEEECCCCChhhccccCCCCcC---cCCCCCEECcCCcCcCccC
Confidence            455788888777   8999999999999999999864   3456799999886554443

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.3e-11  Score=73.13  Aligned_cols=47  Identities=26%  Similarity=0.729  Sum_probs=40.0

Q ss_pred             ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      .++++|.+|++.+   +||.|+.|.++||..|++++..   .++...|+|+.|
T Consensus         7 ~~~~~C~~C~~~g---~lv~Cd~C~~~~H~~C~~~~~~---~~~~~~W~C~~C   53 (61)
T d1mm2a_           7 HHMEFCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLP---EIPNGEWLCPRC   53 (61)
T ss_dssp             SSCSSCTTTCCCS---SCBCCSSSCCCBCSSSSSSCCS---SCCSSCCCCTTT
T ss_pred             CCcCCCcCCCCCC---eEEEeCCCCccCchhhcCCCcC---cCCCCcEECCCC
Confidence            4577999999887   8999999999999999988764   334579999988

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=1.3e-10  Score=73.86  Aligned_cols=50  Identities=18%  Similarity=0.388  Sum_probs=38.6

Q ss_pred             ccCcccccccc-CCCceecCCcccccccccccCCCC---CCCCccccccccchhh
Q psy17723         88 KSCVACEKAQD-DDKMLFCDLCDRGYHNYCIGLDKI---PTVGLVFTLKKKKNKK  138 (145)
Q Consensus        88 ~~C~vC~~~~~-~~~ll~Cd~C~~~yH~~Cl~l~~~---p~~~W~C~~C~~~~~~  138 (145)
                      ++| +|++.++ ++.||.||.|+.|||..|+++...   ..+.|+|+.|+.++.+
T Consensus        13 v~C-iC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~gp   66 (79)
T d1wepa_          13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP   66 (79)
T ss_dssp             CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred             eEe-ECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcCC
Confidence            366 8998754 556899999999999999985432   3357999999876543

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.90  E-value=1.7e-10  Score=71.96  Aligned_cols=46  Identities=24%  Similarity=0.433  Sum_probs=36.4

Q ss_pred             ccccccc-CCCceecCCcccccccccccC--CCCCCCCccccccccchh
Q psy17723         92 ACEKAQD-DDKMLFCDLCDRGYHNYCIGL--DKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        92 vC~~~~~-~~~ll~Cd~C~~~yH~~Cl~l--~~~p~~~W~C~~C~~~~~  137 (145)
                      +|+..++ ...||+|+.|++|||+.|+++  ..++.+.|+|+.|.....
T Consensus        20 ~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~~~   68 (72)
T d1weea_          20 KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG   68 (72)
T ss_dssp             TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred             eCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECcCCcCcCC
Confidence            6776543 456899999999999999984  345678999999987643

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=9.9e-11  Score=73.64  Aligned_cols=53  Identities=17%  Similarity=0.439  Sum_probs=41.4

Q ss_pred             ccccccccCccccccccCCCceecCCcccccccccccCC-------CCCCCCccccccccc
Q psy17723         82 WQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLD-------KIPTVGLVFTLKKKK  135 (145)
Q Consensus        82 W~C~~C~~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~-------~~p~~~W~C~~C~~~  135 (145)
                      +.=++..+| +|++.++++.||.|+.|++|||..|+++.       ..+...|+|+.|...
T Consensus        11 ~~d~~~~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~   70 (76)
T d1wema_          11 VYDPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             SCCTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             ccCCCcCEE-ECCCccCCCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcCc
Confidence            334455678 89988878889999999999999999743       234567999999754

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.84  E-value=3.8e-10  Score=68.75  Aligned_cols=47  Identities=21%  Similarity=0.501  Sum_probs=36.5

Q ss_pred             cCccccccccC-CCceecCCcccccccccccCC--CC-CCCCccccccccc
Q psy17723         89 SCVACEKAQDD-DKMLFCDLCDRGYHNYCIGLD--KI-PTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~~-~~ll~Cd~C~~~yH~~Cl~l~--~~-p~~~W~C~~C~~~  135 (145)
                      .|.+|++.+++ ..||.|+.|+.|||..|+++.  .+ +...|+|+.|..+
T Consensus         8 ~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           8 QCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             CCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             cCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            67788876554 467899999999999999843  22 3468999999864

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=8e-10  Score=71.29  Aligned_cols=54  Identities=20%  Similarity=0.494  Sum_probs=41.2

Q ss_pred             ccccccccccccCCC--CCcEecCCCCCCccccCCCCCCCCC-CcCCCCcccccccc
Q psy17723         35 PESDKCKACDRDTSA--GEMIQCGKCVRYLHPACLDLPGEML-PHMKLYDWQCSDCK   88 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~--~~ll~C~~C~~~~H~~Cl~~~~~~~-~~~~~~~W~C~~C~   88 (145)
                      ....+|.+|+.....  ..||.|+.|..+||..|+++++... ..++...|+|+.|+
T Consensus        14 ~~~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~   70 (88)
T d1weva_          14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT   70 (88)
T ss_dssp             HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred             cCcCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccC
Confidence            345679999976533  6799999999999999999875421 23456699999884

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.74  E-value=9.5e-10  Score=69.56  Aligned_cols=50  Identities=20%  Similarity=0.440  Sum_probs=38.7

Q ss_pred             ccCccccccccCCCceecC--CcccccccccccCCCCCC-------CCccccccccchhh
Q psy17723         88 KSCVACEKAQDDDKMLFCD--LCDRGYHNYCIGLDKIPT-------VGLVFTLKKKKNKK  138 (145)
Q Consensus        88 ~~C~vC~~~~~~~~ll~Cd--~C~~~yH~~Cl~l~~~p~-------~~W~C~~C~~~~~~  138 (145)
                      ++| +|+...+.+.||+|+  .|..|||..|++++..+.       ..|+|+.|...+..
T Consensus        17 ~~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~~p   75 (78)
T d1wewa_          17 VRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP   75 (78)
T ss_dssp             CCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred             cEe-ECCCccCCCcEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcCCC
Confidence            367 898877777888886  899999999998655432       25999999876643

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.66  E-value=6.6e-09  Score=63.05  Aligned_cols=52  Identities=23%  Similarity=0.617  Sum_probs=40.5

Q ss_pred             ccccccccccccCCC-CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         35 PESDKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      .++..|.+|+...+. ..||.|+.|+.+||..|++++.....  ....|+|+.|.
T Consensus         4 ~~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~--~~~~w~C~~C~   56 (64)
T d1we9a_           4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAE--HIKQYKCPSCS   56 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGG--GCSSCCCHHHH
T ss_pred             CCCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCC--CCCeEECcCCc
Confidence            346789999987755 56899999999999999998754322  23589999874

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=2.3e-07  Score=57.41  Aligned_cols=45  Identities=31%  Similarity=0.865  Sum_probs=31.8

Q ss_pred             ccccccccccCCCCCcEec--CCCC-CCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQC--GKCV-RYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C--~~C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ...| +|++..+ ++||.|  +.|. .+||+.||++.     .++...|+|+.|+
T Consensus        16 ~~~C-iC~~~~~-~~~i~c~~~~C~~~wfH~~Cvgl~-----~~p~~~w~C~~C~   63 (71)
T d1wesa_          16 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVSLT-----YKPKGKWYCPKCR   63 (71)
T ss_dssp             CCCS-TTCCCCC-SSEECCSCTTCSCCCEETTTTTCS-----SCCSSCCCCTTTS
T ss_pred             CCEE-EeCCCCC-CCEEEEECCCCCCcCccCccCCCC-----cCCCCcEECcCCc
Confidence            3467 8997653 356666  4574 68999999763     4456799999883

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=98.37  E-value=4.3e-08  Score=56.92  Aligned_cols=44  Identities=32%  Similarity=0.809  Sum_probs=33.4

Q ss_pred             cccccccccCCCCCcEecCC---CCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         38 DKCKACDRDTSAGEMIQCGK---CVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        38 ~~C~~C~~~~~~~~ll~C~~---C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      ..| +|+...+ ++||.|+.   |..+||..|+++.     .++.+.|+|+.|+
T Consensus         3 ~yC-~C~~~~~-~~mi~Cd~~~C~~~WfH~~Cvgl~-----~~p~~~w~C~~C~   49 (51)
T d2pnxa1           3 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLT-----TKPRGKWFCPRCS   49 (51)
T ss_dssp             EET-TTTEECC-SEEEECSCTTCSSCEEEGGGGTCS-----SCCSSCCCCHHHH
T ss_pred             cEE-EcCCCCC-CCEEEEecCCCCCCCEeCCccCCC-----cCCCCcEECcCCC
Confidence            467 7987654 45999987   5679999999874     3345699999874

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=1.7e-08  Score=63.01  Aligned_cols=51  Identities=22%  Similarity=0.576  Sum_probs=38.3

Q ss_pred             cccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCC--cCCCCccccccc
Q psy17723         36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLP--HMKLYDWQCSDC   87 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~--~~~~~~W~C~~C   87 (145)
                      +...| +|+...+.+.||.|+.|..+||..|++++.....  ......|+|+.|
T Consensus        15 ~~~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C   67 (76)
T d1wema_          15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC   67 (76)
T ss_dssp             TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHH
T ss_pred             CcCEE-ECCCccCCCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCC
Confidence            45568 8998887788999999999999999987532211  122357999877

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.31  E-value=3.1e-07  Score=56.64  Aligned_cols=46  Identities=20%  Similarity=0.586  Sum_probs=35.4

Q ss_pred             cccccccccCCC-CCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         38 DKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        38 ~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      ..| +|+...+. +.||.|+.|..+||..|++++...   .+...|+|+.|
T Consensus        17 ~~C-~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~---~~~~~~~C~~C   63 (72)
T d1weea_          17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNAD---ALPSKFLCFRC   63 (72)
T ss_dssp             ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTS---CCCSCCCCHHH
T ss_pred             EEe-eCCCCcCCCCeEEEeCCCCCcCchhhcCCcccc---CCCCcEECcCC
Confidence            347 78876544 569999999999999999986542   23468998877

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.17  E-value=5.8e-07  Score=56.27  Aligned_cols=50  Identities=26%  Similarity=0.639  Sum_probs=36.8

Q ss_pred             ccccccccccCCCCCcEecC--CCCCCccccCCCCCCCCCCc--CCCCccccccc
Q psy17723         37 SDKCKACDRDTSAGEMIQCG--KCVRYLHPACLDLPGEMLPH--MKLYDWQCSDC   87 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~--~C~~~~H~~Cl~~~~~~~~~--~~~~~W~C~~C   87 (145)
                      ...| +|+...+.+.||+|+  .|..+||..|+++.......  .....|+|+.|
T Consensus        16 ~~~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C   69 (78)
T d1wewa_          16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEIC   69 (78)
T ss_dssp             CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHH
T ss_pred             ccEe-ECCCccCCCcEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCC
Confidence            4568 899887777899997  69999999999886432221  12347999877

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=2.6e-07  Score=58.13  Aligned_cols=47  Identities=28%  Similarity=0.746  Sum_probs=35.2

Q ss_pred             cccccccccCCC-CCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723         38 DKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC   87 (145)
Q Consensus        38 ~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   87 (145)
                      ..| +|+...+. ..||.|+.|..+||..|+++.....  .....|+|+.|
T Consensus        13 v~C-iC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~--~~~~~~~C~~C   60 (79)
T d1wepa_          13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENA--VDIDIYHCPDC   60 (79)
T ss_dssp             CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHH--TTCSBBCCTTT
T ss_pred             eEe-ECCCccCCCCcEEECCCCCCcEeccccCcchhcC--CCCCEEECccC
Confidence            345 99987643 5799999999999999999864321  12347999977

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0012  Score=41.01  Aligned_cols=54  Identities=28%  Similarity=0.696  Sum_probs=38.5

Q ss_pred             CCccccccccccccCCCCCcEecCCCCCCccccCCCCC--------CCCCCcC-CCCccccccc
Q psy17723         33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLP--------GEMLPHM-KLYDWQCSDC   87 (145)
Q Consensus        33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~--------~~~~~~~-~~~~W~C~~C   87 (145)
                      ++.++..|.+|. ....+.++-|-.|.+.||..||.--        .++.... ....|.|..|
T Consensus        11 ~v~~D~mC~vC~-v~t~~~l~pCRvCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C   73 (89)
T d1wila_          11 PVVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC   73 (89)
T ss_dssp             CCCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT
T ss_pred             CCCcCccccccC-cccccceecceeecchhhHHHHHHhcccccHHHHHHHHhhcCCCCcchhhh
Confidence            467899999994 4456788899999999999996431        1222222 3469988877

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.42  E-value=0.00065  Score=39.03  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=30.1

Q ss_pred             ccccccccccccCCC-CCcEecCCCCCCccccCCCCCCC
Q psy17723         35 PESDKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPGE   72 (145)
Q Consensus        35 ~~~~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~   72 (145)
                      +.+..|.+|.+.-.. +..+....|+..||..|+..|+.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~   41 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG   41 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHH
Confidence            345679999987654 55667778999999999999874

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=95.66  E-value=0.00036  Score=40.66  Aligned_cols=48  Identities=13%  Similarity=0.243  Sum_probs=33.2

Q ss_pred             cCccccccccCCCce--ecCCccccccccccc--CCCCCCCCccccccccchhh
Q psy17723         89 SCVACEKAQDDDKML--FCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKK  138 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll--~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~  138 (145)
                      +|.+|....++..+.  .|.+|...||..||.  +..  .+.+.||.|+.+.+.
T Consensus         8 ~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~--~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           8 VCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGVVYNT   59 (60)
T ss_dssp             EETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCBCCC
T ss_pred             CCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhh--CCCCCCcccCCeeec
Confidence            667777654433333  567889999999997  322  245789999987654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=95.36  E-value=0.0002  Score=41.84  Aligned_cols=36  Identities=17%  Similarity=0.374  Sum_probs=27.3

Q ss_pred             cccccccccccCCCCCcE--ecCCCCCCccccCCCCCC
Q psy17723         36 ESDKCKACDRDTSAGEMI--QCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        36 ~~~~C~~C~~~~~~~~ll--~C~~C~~~~H~~Cl~~~~   71 (145)
                      ...+|.+|.+..+...+.  .|.+|...||..||..++
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~   42 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWL   42 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHH
Confidence            467899998876543333  567788999999998875

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0067  Score=37.56  Aligned_cols=45  Identities=20%  Similarity=0.578  Sum_probs=32.1

Q ss_pred             cCccccccccCCCceecCCccccccccccc----C--------CCC--CCCCcccccccc
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG----L--------DKI--PTVGLVFTLKKK  134 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~----l--------~~~--p~~~W~C~~C~~  134 (145)
                      .|.||.-.. ...++-|..|.+.||..||.    +        ...  -+-.|-|..|..
T Consensus        17 mC~vC~v~t-~~~l~pCRvCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C~n   75 (89)
T d1wila_          17 MCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN   75 (89)
T ss_dssp             CCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred             cccccCccc-ccceecceeecchhhHHHHHHhcccccHHHHHHHHhhcCCCCcchhhhcc
Confidence            677885433 56777999999999999993    1        111  234699999964

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.13  E-value=0.017  Score=32.66  Aligned_cols=43  Identities=21%  Similarity=0.532  Sum_probs=30.4

Q ss_pred             cCcccccccc-CCCceecCCccccccccccc--CCCCCCCCccccccccc
Q psy17723         89 SCVACEKAQD-DDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKK  135 (145)
Q Consensus        89 ~C~vC~~~~~-~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~  135 (145)
                      .|.+|...-. ++..+....|+..||..|+.  +..    .-.||.|+..
T Consensus         7 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~   52 (55)
T d1iyma_           7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT   52 (55)
T ss_dssp             CCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred             CCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh----CCcCCCCCCE
Confidence            4667876543 34556677899999999997  543    2369999864

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.97  E-value=0.0073  Score=38.96  Aligned_cols=51  Identities=24%  Similarity=0.305  Sum_probs=31.7

Q ss_pred             cccccccccccCC---------------CCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723         36 ESDKCKACDRDTS---------------AGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK   88 (145)
Q Consensus        36 ~~~~C~~C~~~~~---------------~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   88 (145)
                      .++.|.||...-.               ....+.-..|++.||..||..|+....  ......||.|+
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~--~~~~~~CP~CR   89 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN--KDGSLQCPSCK   89 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC--CSSCCBCTTTC
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcC--cCCCCcccccc
Confidence            3668999986421               123344467999999999988764211  12345677663

>d1weqa_ g.50.1.2 (A:) PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 7 (NYD-SP6)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.44  E-value=0.096  Score=32.32  Aligned_cols=33  Identities=18%  Similarity=0.390  Sum_probs=26.2

Q ss_pred             CceecCCcc-cccccccccCCCCCCCCcccccccc
Q psy17723        101 KMLFCDLCD-RGYHNYCIGLDKIPTVGLVFTLKKK  134 (145)
Q Consensus       101 ~ll~Cd~C~-~~yH~~Cl~l~~~p~~~W~C~~C~~  134 (145)
                      .|++|..|+ .+-|..|-.|... ...|.|..|+.
T Consensus        45 ~ii~C~~CGS~gtH~~C~~l~~~-~~~y~C~~C~~   78 (85)
T d1weqa_          45 RLILCATCGSHGTHRDCSSLRPN-SKKWECNECLP   78 (85)
T ss_dssp             BCEECSSSCCCEECSGGGTCCTT-CSCCCCTTTSC
T ss_pred             EEEeecccCCccchhhhcCCcCC-CCCEECCcCcc
Confidence            488999999 4899999766533 45799999974

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.03  Score=34.47  Aligned_cols=31  Identities=23%  Similarity=0.495  Sum_probs=24.1

Q ss_pred             CceecCCccccccccccc--CCCCCCCCccccccccc
Q psy17723        101 KMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKK  135 (145)
Q Consensus       101 ~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~  135 (145)
                      ..+....|+..||..||.  |..-    =.||.|+.+
T Consensus        50 ~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~   82 (88)
T d3dplr1          50 CTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNRE   82 (88)
T ss_dssp             CCEEEETTSCEEEHHHHHHHHTTC----SBCSSSCSB
T ss_pred             CCeEEccccCcccHHHHHHHHHHC----CcCCCCCCc
Confidence            346778899999999998  6532    259999875

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.012  Score=36.50  Aligned_cols=21  Identities=19%  Similarity=0.346  Sum_probs=18.0

Q ss_pred             cEecCCCCCCccccCCCCCCC
Q psy17723         52 MIQCGKCVRYLHPACLDLPGE   72 (145)
Q Consensus        52 ll~C~~C~~~~H~~Cl~~~~~   72 (145)
                      .+....|+..||..||..++.
T Consensus        51 ~~~~~~C~H~FH~~Ci~~Wl~   71 (88)
T d3dplr1          51 TVAWGVCNHAFHFHCISRWLK   71 (88)
T ss_dssp             CEEEETTSCEEEHHHHHHHHT
T ss_pred             CeEEccccCcccHHHHHHHHH
Confidence            567778999999999999874

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.27  E-value=0.1  Score=34.08  Aligned_cols=52  Identities=13%  Similarity=0.324  Sum_probs=34.6

Q ss_pred             cCcccccccc--CCCceecCCccccccccccc--CCCCCCCCccccccccchhhhh
Q psy17723         89 SCVACEKAQD--DDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKKKK  140 (145)
Q Consensus        89 ~C~vC~~~~~--~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~~~  140 (145)
                      .|.+|+..-.  ......|..|...++..|..  ....+...|+|..|.++..-+.
T Consensus        50 ~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~~~~~~~~w~C~~C~k~re~~~  105 (124)
T d1zbdb_          50 RCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVWK  105 (124)
T ss_dssp             BCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHHHHH
T ss_pred             cCcccCCcccCCCCCCCcCccCCcccccCCCCCccCCCCCCCEECccCcchHHHHH
Confidence            4667776422  23446788898888888864  2223445799999998765433

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.04  E-value=0.078  Score=33.75  Aligned_cols=34  Identities=15%  Similarity=0.060  Sum_probs=24.3

Q ss_pred             eecCCccccccccccc--CCCCC-CCCccccccccch
Q psy17723        103 LFCDLCDRGYHNYCIG--LDKIP-TVGLVFTLKKKKN  136 (145)
Q Consensus       103 l~Cd~C~~~yH~~Cl~--l~~~p-~~~W~C~~C~~~~  136 (145)
                      +.--.|...||..||.  +.... .+.-.||.|+...
T Consensus        56 ~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~   92 (114)
T d1v87a_          56 GRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY   92 (114)
T ss_dssp             EEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred             eEECCCCChhhHHHHHHHHHhcCcCCCCccccccchh
Confidence            4445799999999997  43322 3456799998654

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=88.02  E-value=0.024  Score=33.25  Aligned_cols=33  Identities=18%  Similarity=0.374  Sum_probs=26.1

Q ss_pred             ccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723         37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        37 ~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      .+.|.+|.+.-.  +.+....|+..||..|+..++
T Consensus         5 ~d~C~IC~~~~~--~~~~~~~C~H~Fc~~Ci~~w~   37 (68)
T d1chca_           5 AERCPICLEDPS--NYSMALPCLHAFCYVCITRWI   37 (68)
T ss_dssp             CCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHH
T ss_pred             CCCCccCCcCcc--CCcEEeCCCCcCcHHHHHHHH
Confidence            457999987652  456778899999999998764

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=86.94  E-value=0.2  Score=25.98  Aligned_cols=29  Identities=14%  Similarity=-0.059  Sum_probs=23.7

Q ss_pred             eecCCcccccccccccCCCCCCCCccccccccc
Q psy17723        103 LFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKK  135 (145)
Q Consensus       103 l~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~  135 (145)
                      .+|..|++.||.    ....|+.+++|..|-.+
T Consensus         3 ~vc~~cG~~Yh~----~~~pPk~~g~CD~cg~~   31 (37)
T d2ak3a2           3 WIHPGSGRVYNI----EFNPPKTMGIDDLTGEP   31 (37)
T ss_dssp             EEETTTTEEEET----TTBCCSSTTBCTTTCCB
T ss_pred             eeeCCcCChhhh----ccCCccccCCccCCCCc
Confidence            469999999996    34678889999999864

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.63  E-value=0.03  Score=31.15  Aligned_cols=33  Identities=12%  Similarity=0.145  Sum_probs=21.9

Q ss_pred             ccccccccCCC-CCcEecCCCCCCccccCCCCCC
Q psy17723         39 KCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPG   71 (145)
Q Consensus        39 ~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~   71 (145)
                      -|.||...-+. +..+.-..|+..||..|+..+.
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~   35 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR   35 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHT
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHH
Confidence            47888775432 2222223699999999998765

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

Probab=85.37  E-value=0.27  Score=25.11  Aligned_cols=29  Identities=21%  Similarity=0.342  Sum_probs=23.2

Q ss_pred             eecCCcccccccccccCCCCCCCCccccccccc
Q psy17723        103 LFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKK  135 (145)
Q Consensus       103 l~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~  135 (145)
                      ..|..|++.||..    ...|+.+++|..|-.+
T Consensus         3 ~~C~~CG~~Yh~~----~~pPk~~g~CD~cg~~   31 (35)
T d1s3ga2           3 RICKVCGTSYHLL----FNPPQVEGKCDKDGGE   31 (35)
T ss_dssp             EEETTTCCEEETT----TBCCSBTTBCTTTCCB
T ss_pred             cCCcCcCchhccc----cCCCCCCCccCCCCCC
Confidence            4689999999963    4568889999998764

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.68  E-value=0.4  Score=26.77  Aligned_cols=40  Identities=18%  Similarity=0.372  Sum_probs=25.4

Q ss_pred             cCccccccccCCCceecCCcccccccccccCCCCCCCCccccccccch
Q psy17723         89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKN  136 (145)
Q Consensus        89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~  136 (145)
                      .|.||.....+..++   .|+..||..|+.-     ..-.||.|+..-
T Consensus         8 ~C~IC~~~~~~p~~l---pCgH~fC~~Ci~~-----~~~~CP~Cr~~~   47 (56)
T d1bora_           8 RCQQCQAEAKCPKLL---PCLHTLCSGCLEA-----SGMQCPICQAPW   47 (56)
T ss_dssp             SCSSSCSSCBCCSCS---TTSCCSBTTTCSS-----SSSSCSSCCSSS
T ss_pred             CCcccCcccCCCEEe---cCCCHHhHHHHHc-----CCCcCcCCCCcc
Confidence            566777644333333   5888888888642     234699998654

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

Probab=83.51  E-value=0.37  Score=24.57  Aligned_cols=29  Identities=17%  Similarity=0.022  Sum_probs=22.9

Q ss_pred             eecCCcccccccccccCCCCCCCCccccccccc
Q psy17723        103 LFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKK  135 (145)
Q Consensus       103 l~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~  135 (145)
                      .+|..|++.||..    ...|+.+++|..|-.+
T Consensus         3 r~c~~cG~~Yh~~----~~PPk~~g~CD~cg~~   31 (35)
T d1e4va2           3 RVHAPSGRVYHVK----FNPPKVEGKDDVTGEE   31 (35)
T ss_dssp             EEETTTTEEEETT----TBCCSSTTBCTTTCCB
T ss_pred             cCCcCcCChhhhc----cCccccCCcccCCCCE
Confidence            3688999999963    4567888999998764

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=83.26  E-value=0.46  Score=25.60  Aligned_cols=17  Identities=12%  Similarity=0.284  Sum_probs=12.7

Q ss_pred             CCCCCCCCccccccccch
Q psy17723        119 LDKIPTVGLVFTLKKKKN  136 (145)
Q Consensus       119 l~~~p~~~W~C~~C~~~~  136 (145)
                      ...+|+ +|.||.|...+
T Consensus        23 Fe~LP~-dw~CP~C~a~K   39 (45)
T d6rxna_          23 FDQLPD-DWCCPVCGVSK   39 (45)
T ss_dssp             GGGSCT-TCBCTTTCCBG
T ss_pred             HHHCCC-CCCCcCCCCcH
Confidence            456665 69999998764

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.78  E-value=0.52  Score=23.96  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=22.8

Q ss_pred             eecCCcccccccccccCCCCCCCCccccccccc
Q psy17723        103 LFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKK  135 (145)
Q Consensus       103 l~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~  135 (145)
                      .+|..|++.||..    ...|+.+.+|..|-.+
T Consensus         3 r~C~~CG~~Yh~~----~~pPk~~g~CD~cG~~   31 (35)
T d1zina2           3 RICRNCGATYHLI----FHPPAKPGVCDKCGGE   31 (35)
T ss_dssp             EEETTTCCEEETT----TBCCSSTTBCTTTCCB
T ss_pred             cCCcCcCchhccc----cCCCCCCCcCCCCCCC
Confidence            4689999999963    4567888999998754

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.53  E-value=0.21  Score=28.65  Aligned_cols=46  Identities=11%  Similarity=0.283  Sum_probs=29.2

Q ss_pred             cCccccccc--cCCCceecCCccccccccccc--CCCCCCCCccccccccchh
Q psy17723         89 SCVACEKAQ--DDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNK  137 (145)
Q Consensus        89 ~C~vC~~~~--~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~  137 (145)
                      .|.||....  .....++-..|+..||..|+.  +....   -.||.|+..-+
T Consensus         5 ~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~---~~CP~CR~~i~   54 (65)
T d1g25a_           5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA---GNCPECGTPLR   54 (65)
T ss_dssp             CCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS---SSCTTTCCCCS
T ss_pred             CCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCc---CCCCCCCcCcc
Confidence            577887531  122223346799999999997  43222   25999997643