Psyllid ID: psy17757

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR
Secondary Structure (PSIPRED)
cHHHHHcccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHcccccccccccccccccccEEEEEcccHHHHHHHHHHHcccEEccccccHHHHHHHHHHHcccccHHccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccc
Coil and Loop (DISEMBL)
MLAKMFaegseggyfmnpgdvdstgaylidrsptyfepILNYLrngqlvldpninpegvleearFFGIESLVPQLMEIIMSRersrdmmplsRRDVINALILTPITAELRFQgvnlagsdlsrldlrninfkvrkgltlpacsvnlkganlegsnmaGVNLRVATLknanlqncDLRAAVLAGadlencdlsgsdlHEANLRGANLKDAALELMLtplhmsqtvr
Flexible Loop (DISEMBL)
MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLagsdlsrldlRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMltplhmsqtvr
Low Complexity Region (SEG)
MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR
Disordered region (IsUnstruct)
*************YFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMS*********LSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELML**********
Disordered Region (DISOPRED)
MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR
Disordered Region (DISEMBL)
MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR
Disordered Region (DISPRO)
**************FMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKD*ALE*MLT*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q7L273	389	BTB/POZ domain-containing	yes	N/A	0.977	0.565	0.478	5e-62
Q80UN1	339	BTB/POZ domain-containing	no	N/A	0.977	0.648	0.552	2e-60
Q9SE95	298	FH protein interacting pr	yes	N/A	0.915	0.691	0.334	2e-17
A5PKG7	234	BTB/POZ domain-containing	no	N/A	0.32	0.307	0.527	7e-16
B5DEL1	234	BTB/POZ domain-containing	no	N/A	0.32	0.307	0.527	1e-15
Q9NXV2	234	BTB/POZ domain-containing	no	N/A	0.32	0.307	0.513	2e-15
Q8VC57	234	BTB/POZ domain-containing	no	N/A	0.328	0.316	0.513	2e-15
Q14681	263	BTB/POZ domain-containing	no	N/A	0.324	0.277	0.534	2e-14
Q8N5Z5	321	BTB/POZ domain-containing	no	N/A	0.284	0.199	0.573	8e-14
Q8CEZ0	266	BTB/POZ domain-containing	no	N/A	0.324	0.274	0.534	1e-09

>sp|Q7L273|KCTD9_HUMAN BTB/POZ domain-containing protein KCTD9 OS=Homo sapiens GN=KCTD9 PE=2 SV=1

 Score =  237 bits (604), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 134/280 (47%), Positives = 165/280 (58%), Gaps = 60/280 (21%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
           MLA MF +    G        D  GA+LIDRSP YFEPILNYLR+GQL+++  IN  GVL
Sbjct: 115 MLAHMFKDKGVWG-----NKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVL 169

Query: 61  EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
           EEARFFGI+SL+  L   I + +   D  P+SR++ +  L+ TP  +ELR QG+N +G+D
Sbjct: 170 EEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGAD 229

Query: 121 LSRLDLRNINFKV------------------------------------------RKGLT 138
           LSRLDLR INFK+                                           +G +
Sbjct: 230 LSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGAS 289

Query: 139 LPACS-------------VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGAD 185
           L  C+              NLKG ++EGS M G+NLRVATLKNA L+NC+LR A LAG D
Sbjct: 290 LKLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTD 349

Query: 186 LENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
           LENCDLSG DL EANLRG+N+K A  E MLTPLHMSQ+VR
Sbjct: 350 LENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR 389

Homo sapiens (taxid: 9606)

>sp|Q80UN1|KCTD9_MOUSE BTB/POZ domain-containing protein KCTD9 OS=Mus musculus GN=Kctd9 PE=2 SV=1

 Score =  232 bits (591), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/230 (55%), Positives = 154/230 (66%), Gaps = 10/230 (4%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
           MLA MF    + G + N    D  GA+LIDRSP YFEPILNYLR+GQL+++  IN  GVL
Sbjct: 115 MLAHMF---KDKGVWGN--KQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVL 169

Query: 61  EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAG-- 118
           EEARFFGI+SL+  L   I + +   D  P+SR++ +  L+ TP  +ELR Q  NL G  
Sbjct: 170 EEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQCANLQGVK 229

Query: 119 ---SDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCD 175
              S+     LR  NF+   GL       NLKG ++EGS M G+NLRVATLKNA L+NC+
Sbjct: 230 MLCSNAEGASLRLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCN 289

Query: 176 LRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
           LR A LAG DLENCDLSG DL EANLRG+N+K A  E MLTPLHMSQ+VR
Sbjct: 290 LRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR 339

Mus musculus (taxid: 10090)

>sp|Q9SE95|FIP2_ARATH FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 124/263 (47%), Gaps = 57/263 (21%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQL--VLDPNINPEG 58
           MLA MF+    G + M        G   IDR   +F  ILN+LR+G +  + DP+ +   
Sbjct: 35  MLAAMFS----GRHAMCQ--ESKKGYVFIDRDGKHFRHILNWLRDGVIPSLSDPDCSE-- 86

Query: 59  VLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAG 118
           +L EA ++ +  L   + +    +E       L+R D+I  +     T  +RF+GVNL+G
Sbjct: 87  LLREADYYQLLGLKDGIKD--SRKEVGEVEAELTRIDIIKCIQ----TERVRFRGVNLSG 140

Query: 119 SDLSRLDL----------RNINF--------KVRKG---------LTLPAC---SVNLKG 148
            DLS+LDL          RN+ F        K R             L  C   S NL+G
Sbjct: 141 IDLSKLDLSLVDFSYACLRNVFFSRTNLQCAKFRNADAEGSIFHNAILRECEFTSANLRG 200

Query: 149 ANLEGSNMAGVNLRVAT----------LKNANLQNCDLRAAVLAGADLENCDLSGSDLHE 198
           A L G+N+   NL+ A           L+ A+LQN DL  A L GA+LE  +L G+ L  
Sbjct: 201 ALLAGTNLQSANLQDACLVGCSFCGADLRTAHLQNADLTNANLEGANLEGANLKGAKLSN 260

Query: 199 ANLRGANLKDAAL-ELMLTPLHM 220
           AN +GANL+ A L  + L   HM
Sbjct: 261 ANFKGANLQRAYLRHVNLREAHM 283

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|A5PKG7|KCTD5_BOVIN BTB/POZ domain-containing protein KCTD5 OS=Bos taurus GN=KCTD5 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 51/72 (70%)

Query: 20  DVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79
           D D TGAYLIDR PTYF P+LNYLR+G+LV++ ++  EGVLEEA F+ I SL+  + + I
Sbjct: 83  DKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKI 142

Query: 80  MSRERSRDMMPL 91
             R+     +PL
Sbjct: 143 RERDSKTSQVPL 154

Its interaction with CUL3 suggests that it may act as a substrate adapter in some E3 ligase complex. Does not affect the function of Kv channel Kv2.1/KCNB1, Kv1.2/KCNA2, Kv4.2/KCND2 and Kv3.4/KCNC4.

Bos taurus (taxid: 9913)

>sp|B5DEL1|KCTD5_RAT BTB/POZ domain-containing protein KCTD5 OS=Rattus norvegicus GN=Kctd5 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 51/72 (70%)

Query: 20  DVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79
           D D TGAYLIDR PTYF P+LNYLR+G+LV++ ++  EGVLEEA F+ I SL+  + + I
Sbjct: 83  DKDETGAYLIDRDPTYFGPVLNYLRHGKLVINRDLAEEGVLEEAEFYNITSLIKLVKDKI 142

Query: 80  MSRERSRDMMPL 91
             R+     MP+
Sbjct: 143 RERDSKTSQMPV 154

Its interaction with CUL3 suggests that it may act as a substrate adapter in some E3 ligase complex. Does not affect the function of Kv channel Kv2.1/KCNB1, Kv1.2/KCNA2, Kv4.2/KCND2 and Kv3.4/KCNC4.

Rattus norvegicus (taxid: 10116)

>sp|Q9NXV2|KCTD5_HUMAN BTB/POZ domain-containing protein KCTD5 OS=Homo sapiens GN=KCTD5 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 51/72 (70%)

Query: 20  DVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79
           D D TGAYLIDR PTYF P+LNYLR+G+LV++ ++  EGVLEEA F+ I SL+  + + I
Sbjct: 83  DKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKI 142

Query: 80  MSRERSRDMMPL 91
             R+     +P+
Sbjct: 143 RERDSKTSQVPV 154

Its interaction with CUL3 suggests that it may act as a substrate adapter in some E3 ligase complex. Does not affect the function of Kv channel Kv2.1/KCNB1, Kv1.2/KCNA2, Kv4.2/KCND2 and Kv3.4/KCNC4.

Homo sapiens (taxid: 9606)

>sp|Q8VC57|KCTD5_MOUSE BTB/POZ domain-containing protein KCTD5 OS=Mus musculus GN=Kctd5 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 51/74 (68%)

Query: 20  DVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79
           D D TGAYLIDR PTYF P+LNYLR+G+LV++ ++  EGVLEEA F+ I SL+  + + I
Sbjct: 83  DKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKI 142

Query: 80  MSRERSRDMMPLSR 93
             R+     MP+  
Sbjct: 143 RERDSRISQMPVKH 156

Its interaction with CUL3 suggests that it may act as a substrate adapter in some E3 ligase complex. Does not affect the function of Kv channel Kv2.1/KCNB1, Kv1.2/KCNA2, Kv4.2/KCND2 and Kv3.4/KCNC4.

Mus musculus (taxid: 10090)

>sp|Q14681|KCTD2_HUMAN BTB/POZ domain-containing protein KCTD2 OS=Homo sapiens GN=KCTD2 PE=1 SV=3

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 47/73 (64%)

Query: 20  DVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79
           D D TGAYLIDR PTYF PILNYLR+G+L++   +  EGVLEEA F+ I SLV  + E I
Sbjct: 112 DKDETGAYLIDRDPTYFGPILNYLRHGKLIITKELAEEGVLEEAEFYNIASLVRLVKERI 171

Query: 80  MSRERSRDMMPLS 92
              E      P+ 
Sbjct: 172 RDNENRTSQGPVK 184

Homo sapiens (taxid: 9606)

>sp|Q8N5Z5|KCD17_HUMAN BTB/POZ domain-containing protein KCTD17 OS=Homo sapiens GN=KCTD17 PE=1 SV=3

 Score = 77.4 bits (189), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 20  DVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79
           D D TGAYLIDR PTYF PILN+LR+G+LVLD ++  EGVLEEA F+ I  L+     II
Sbjct: 69  DRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGVLEEAEFYNIGPLI----RII 124

Query: 80  MSRERSRD 87
             R   +D
Sbjct: 125 KDRMEEKD 132

Homo sapiens (taxid: 9606)

>sp|Q8CEZ0|KCTD2_MOUSE BTB/POZ domain-containing protein KCTD2 OS=Mus musculus GN=Kctd2 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 47/73 (64%)

Query: 20  DVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79
           D D TGAYLIDR PTYF PILNYLR+G+L++   +  EGVLEEA F+ I SLV  + E I
Sbjct: 111 DKDETGAYLIDRDPTYFGPILNYLRHGKLIITKELGEEGVLEEAEFYNIASLVRLVKERI 170

Query: 80  MSRERSRDMMPLS 92
              E      P+ 
Sbjct: 171 RDNENRTSQGPVK 183

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
242018011	466	BTB/POZ domain-containing protein KCTD9,	0.995	0.480	0.625	8e-88
270013763	398	hypothetical protein TcasGA2_TC012406 [T	0.995	0.562	0.603	4e-84
189240901	391	PREDICTED: similar to potassium channel	0.995	0.572	0.603	5e-84
389609809	280	similar to CG14647 [Papilio xuthus]	0.995	0.8	0.587	4e-79
357621197	294	putative BTB/POZ domain-containing prote	0.995	0.761	0.583	2e-78
307213919	386	BTB/POZ domain-containing protein KCTD9	1.0	0.582	0.540	3e-73
156538483	391	PREDICTED: BTB/POZ domain-containing pro	1.0	0.575	0.548	1e-72
170038204	351	BTB/POZ domain-containing protein KCTD9	0.977	0.626	0.55	3e-72
321478158	381	hypothetical protein DAPPUDRAFT_191018 [	0.995	0.587	0.542	4e-72
157113261	368	hypothetical protein AaeL_AAEL006374 [Ae	0.977	0.597	0.546	1e-71

>gi|242018011|ref|XP_002429477.1| BTB/POZ domain-containing protein KCTD9, putative [Pediculus humanus corporis] gi|212514409|gb|EEB16739.1| BTB/POZ domain-containing protein KCTD9, putative [Pediculus humanus corporis]

 Score =  328 bits (842), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 175/280 (62%), Positives = 194/280 (69%), Gaps = 56/280 (20%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
           MLA+MFA+  E GY M P D+D  GAYLIDRSPTYFEPILNYLRNGQL+ D N+NP G+L
Sbjct: 188 MLARMFAQ-DEDGYLMTPSDLDVNGAYLIDRSPTYFEPILNYLRNGQLIFDTNVNPAGIL 246

Query: 61  EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
           +EARFF IESLV  L  +I +++RS+D+ PL+RRDVINALI T  TA+LRFQGVNLAGSD
Sbjct: 247 QEARFFRIESLVEHLENLISTQQRSQDIAPLTRRDVINALITTSSTADLRFQGVNLAGSD 306

Query: 121 LSRLDLRNINFKVR------------------------------------------KGLT 138
           LSRLDLRNINFK                                            +G  
Sbjct: 307 LSRLDLRNINFKYACLHGCRMVGANLSFCCLERADLSHAVMESAQLMGVQMLCANLEGAN 366

Query: 139 LPACS-------------VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGAD 185
           L  C+             VNLKGANLE SNMAGVNLRVATLKNANLQNCDLRAAVLAGAD
Sbjct: 367 LRGCNFQDPTGVRTNMEGVNLKGANLECSNMAGVNLRVATLKNANLQNCDLRAAVLAGAD 426

Query: 186 LENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
           LE CDLSGSDL EANLRGANLKDAA ELMLTP+HMSQT+R
Sbjct: 427 LEKCDLSGSDLQEANLRGANLKDAAFELMLTPIHMSQTIR 466

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013763|gb|EFA10211.1| hypothetical protein TcasGA2_TC012406 [Tribolium castaneum]

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 169/280 (60%), Positives = 190/280 (67%), Gaps = 56/280 (20%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
           MLA+MFA G E GY   P ++D  GA+LIDRSP YFEPI+NYLRNGQL+ D NINPEG+L
Sbjct: 120 MLARMFA-GDEDGYLFTPSNIDKNGAFLIDRSPLYFEPIINYLRNGQLIYDSNINPEGIL 178

Query: 61  EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
           EEARFFGIES++P L +II  +  +RD +PL+RRDVI+ALI +  T ELRFQGVNL+G+D
Sbjct: 179 EEARFFGIESIIPTLEQIIAQQSVNRDNLPLTRRDVIDALIRSAYTTELRFQGVNLSGAD 238

Query: 121 LSRLDLRNINFKVRK-------GLTLPACS------------------------------ 143
           LS+LDLR INFK          G  L  C                               
Sbjct: 239 LSKLDLRYINFKYANLQGCKLTGSNLSYCCLERADLSYANLDGAQLLGVKCLCANLEGVS 298

Query: 144 ------------------VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGAD 185
                             VNLKGANLEGS+M GVNLRVATLKNANLQNCDLRAAVLAGAD
Sbjct: 299 MKNSNFKDPAGGRANMEGVNLKGANLEGSDMGGVNLRVATLKNANLQNCDLRAAVLAGAD 358

Query: 186 LENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
           LE CDLSGSDLHEANLRGANLKDAA ELMLTPLHMSQT+R
Sbjct: 359 LEFCDLSGSDLHEANLRGANLKDAAFELMLTPLHMSQTIR 398

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240901|ref|XP_966398.2| PREDICTED: similar to potassium channel tetramerisation domain containing 9 [Tribolium castaneum]

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 169/280 (60%), Positives = 190/280 (67%), Gaps = 56/280 (20%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
           MLA+MFA G E GY   P ++D  GA+LIDRSP YFEPI+NYLRNGQL+ D NINPEG+L
Sbjct: 113 MLARMFA-GDEDGYLFTPSNIDKNGAFLIDRSPLYFEPIINYLRNGQLIYDSNINPEGIL 171

Query: 61  EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
           EEARFFGIES++P L +II  +  +RD +PL+RRDVI+ALI +  T ELRFQGVNL+G+D
Sbjct: 172 EEARFFGIESIIPTLEQIIAQQSVNRDNLPLTRRDVIDALIRSAYTTELRFQGVNLSGAD 231

Query: 121 LSRLDLRNINFKVRK-------GLTLPACS------------------------------ 143
           LS+LDLR INFK          G  L  C                               
Sbjct: 232 LSKLDLRYINFKYANLQGCKLTGSNLSYCCLERADLSYANLDGAQLLGVKCLCANLEGVS 291

Query: 144 ------------------VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGAD 185
                             VNLKGANLEGS+M GVNLRVATLKNANLQNCDLRAAVLAGAD
Sbjct: 292 MKNSNFKDPAGGRANMEGVNLKGANLEGSDMGGVNLRVATLKNANLQNCDLRAAVLAGAD 351

Query: 186 LENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
           LE CDLSGSDLHEANLRGANLKDAA ELMLTPLHMSQT+R
Sbjct: 352 LEFCDLSGSDLHEANLRGANLKDAAFELMLTPLHMSQTIR 391

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609809|dbj|BAM18516.1| similar to CG14647 [Papilio xuthus]

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 165/281 (58%), Positives = 188/281 (66%), Gaps = 57/281 (20%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
           MLA+MFAE     Y MNP   DSTGAYLIDRSP YFEPILNYLR+G ++LD +INP+GVL
Sbjct: 1   MLARMFAE-DNNVYLMNPSATDSTGAYLIDRSPDYFEPILNYLRHGDVILDKHINPKGVL 59

Query: 61  EEARFFGIESLVPQLMEII-MSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGS 119
           EEA F+GI+S++P L ++I  S   S     L+R+DV+ ++ILT  T+ELR+QGVNLAG+
Sbjct: 60  EEAVFYGIDSMIPHLNQLIEESTSASSSNHCLTRKDVVRSIILTSTTSELRYQGVNLAGA 119

Query: 120 DLSRLDLRNINFKVR------------------------------------------KGL 137
           DLSRLDLR INFK                                            +G 
Sbjct: 120 DLSRLDLRYINFKYACLSGCNLSGANLSHCCLERADLSHANLEGTQLLGVKALCANMEGA 179

Query: 138 TLPACS-------------VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGA 184
            L  C+             VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLR AVLAGA
Sbjct: 180 NLRGCNMEDPIGSRAVLEGVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRTAVLAGA 239

Query: 185 DLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
           DLE CDLSGSDLHEANLRGANLKDAA ELMLTPLHMSQT+R
Sbjct: 240 DLECCDLSGSDLHEANLRGANLKDAAFELMLTPLHMSQTIR 280

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621197|gb|EHJ73113.1| putative BTB/POZ domain-containing protein KCTD9 [Danaus plexippus]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 164/281 (58%), Positives = 187/281 (66%), Gaps = 57/281 (20%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
           MLA+MFA+     Y MNP   DSTGAYLIDRSP YFEPILNYLR+G ++LD N+NP GVL
Sbjct: 15  MLARMFAD-DNNVYLMNPSTKDSTGAYLIDRSPEYFEPILNYLRHGDVILDKNVNPRGVL 73

Query: 61  EEARFFGIESLVPQLMEII-MSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGS 119
           EEA F+G++S++PQL  ++  S   S +   L+R DVI  +I+TP T+ELRFQGVNLAG+
Sbjct: 74  EEAVFYGLDSMIPQLNHLVDKSMSSSGNNQSLTRMDVIRLVIMTPTTSELRFQGVNLAGA 133

Query: 120 DLSRLDLRNINFKVR------------------------------------------KGL 137
           DL+RLDLR INFK                                            +G 
Sbjct: 134 DLNRLDLRYINFKYACLSKCNLSGANLSHCCLERADLSHANLEGAQLLGVKALCANMEGA 193

Query: 138 TLPACS-------------VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGA 184
            L  C+             VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLR AVLAGA
Sbjct: 194 NLKGCNMEDPVGSRAVMEGVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRMAVLAGA 253

Query: 185 DLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
           DLE CDLSGSDLHEANLRGANLKDAA ELMLTPLHMSQT+R
Sbjct: 254 DLECCDLSGSDLHEANLRGANLKDAAFELMLTPLHMSQTIR 294

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213919|gb|EFN89166.1| BTB/POZ domain-containing protein KCTD9 [Harpegnathos saltator]

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 152/281 (54%), Positives = 179/281 (63%), Gaps = 56/281 (19%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
           MLA+MF E  +  + M P   D  GAYLIDRSPTYFEP+LNYLR+GQ++LD N+N  GVL
Sbjct: 106 MLARMFTEPEDAEHAMQPSRRDYQGAYLIDRSPTYFEPLLNYLRHGQVILDSNVNVAGVL 165

Query: 61  EEARFFGIESLVPQLMEIIMSRERSRD-MMPLSRRDVINALILTPITAELRFQGVNLAGS 119
            EARF+GIE  +  L  ++   E  +D ++ L+R+DV+ A++ TP  AELRFQGV+  G+
Sbjct: 166 AEARFYGIEGAIRILTTMVEKEELQKDGLISLTRKDVLKAIMSTPTNAELRFQGVDFVGA 225

Query: 120 DLSRLDLRNINFKVR-------KGLTLPACS----------------------------- 143
           DLS+LDLRNINFK          G  L  C                              
Sbjct: 226 DLSKLDLRNINFKYAVMHHCSLVGANLSGCCFERADLSHANLQGAQLVCVKMLCANLAAA 285

Query: 144 -------------------VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGA 184
                              VNLKGANLEGSNMA VNLRVATLKNANL+NCDLR+AVLAGA
Sbjct: 286 NLHSCNFEDPGGLSANMEGVNLKGANLEGSNMAAVNLRVATLKNANLRNCDLRSAVLAGA 345

Query: 185 DLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
           DLE CDLSGSDL +ANLRGANLKDAA ELMLTPLHMSQT+R
Sbjct: 346 DLECCDLSGSDLQDANLRGANLKDAAFELMLTPLHMSQTIR 386

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538483|ref|XP_001606722.1| PREDICTED: BTB/POZ domain-containing protein KCTD9-like [Nasonia vitripennis]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/281 (54%), Positives = 179/281 (63%), Gaps = 56/281 (19%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
           MLA+MF    +  + + P   D  GAY+IDRSPTYFEP+LNYLR+GQL++DP +NP GVL
Sbjct: 111 MLARMFTGNEQNEWRILPSKKDPNGAYMIDRSPTYFEPLLNYLRHGQLIIDPVLNPSGVL 170

Query: 61  EEARFFGIESLVPQL-MEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGS 119
           EEARF+GIE  V  L        ++ +D M L+R+DV+ A++ TP  +ELR QGVN+AGS
Sbjct: 171 EEARFYGIEGAVSVLEEMAKEEEKKEKDTMSLTRKDVLKAIMSTPTNSELRLQGVNIAGS 230

Query: 120 DLSRLDLRNINFKVR-------KGLTLPACS----------------------------- 143
           DLSRLDLRNINFK          G  L  C                              
Sbjct: 231 DLSRLDLRNINFKYANLRGCNMSGANLTHCCLERADLSHANLEGAQLVCVKMVCANLEAA 290

Query: 144 -------------------VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGA 184
                              VNLKGANLEGSNMA VNLRVATLK+A L+NCDLR+AVLAGA
Sbjct: 291 NLRSCNFEDPGGLPSNMEGVNLKGANLEGSNMAAVNLRVATLKHAILRNCDLRSAVLAGA 350

Query: 185 DLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
           DLE CDLSGSDLHEANLRGANLKDAA ELMLTPLHMSQT+R
Sbjct: 351 DLECCDLSGSDLHEANLRGANLKDAAFELMLTPLHMSQTIR 391

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170038204|ref|XP_001846942.1| BTB/POZ domain-containing protein KCTD9 [Culex quinquefasciatus] gi|167881755|gb|EDS45138.1| BTB/POZ domain-containing protein KCTD9 [Culex quinquefasciatus]

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 154/280 (55%), Positives = 182/280 (65%), Gaps = 60/280 (21%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
           MLA+MFA+       M P D D+ GAYLIDRS  YFEPILNYLR+GQL+ D +++PEG+L
Sbjct: 77  MLARMFAQEDA----MCPSDKDAEGAYLIDRSSQYFEPILNYLRHGQLIFDGHLSPEGIL 132

Query: 61  EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
           EEA+FFGIE L+PQL E++  ++ + D +PL+RRDVI+ALI T    ELRFQGVNLAG+D
Sbjct: 133 EEAKFFGIEGLIPQLEELVRQQQPAED-LPLTRRDVISALIKTSQMTELRFQGVNLAGAD 191

Query: 121 LSRLDLRNINFKVR------------------------------------------KGLT 138
           L +LDLR+INFK                                            +G  
Sbjct: 192 LRKLDLRHINFKYACLTRCNLSLANLNYCCLERADLSFANLEGAQLLSVKGLCANMEGAN 251

Query: 139 LPACS-------------VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGAD 185
           L  C+             VNLKGA LE SNMAGVNLRVA L+NANL NC+LRAAVLAGAD
Sbjct: 252 LQGCNFEDPTGVRSNLEGVNLKGACLENSNMAGVNLRVANLRNANLMNCNLRAAVLAGAD 311

Query: 186 LENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
           LE C+LSGSDL EANLRGAN KDA LELMLTPLHMSQ +R
Sbjct: 312 LERCNLSGSDLQEANLRGANFKDAQLELMLTPLHMSQAIR 351

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478158|gb|EFX89116.1| hypothetical protein DAPPUDRAFT_191018 [Daphnia pulex]

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 152/280 (54%), Positives = 180/280 (64%), Gaps = 56/280 (20%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
           ML++MF+  S G + ++P  VD++GAYLIDRSPTYFEPILNYLR+G+L+LD  +N +GVL
Sbjct: 103 MLSRMFSSDS-GQFNLSPSSVDASGAYLIDRSPTYFEPILNYLRHGKLILDSGVNVQGVL 161

Query: 61  EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
           EEA+FFGIESLVPQL  +    +  +   PL+R +VI AL+ T  T ELRFQGVNLA +D
Sbjct: 162 EEAQFFGIESLVPQLESLADDEKSKKKQQPLTRAEVIKALVRTSPTTELRFQGVNLAEAD 221

Query: 121 LSRLDLRNINFKVR------------------------------------------KGLT 138
           LS+LDLR+INFK                                            +G +
Sbjct: 222 LSKLDLRSINFKYACMRGCNLSGANLSWCNLERCDLSGSKMDGAQLLGVKMLCATLEGAS 281

Query: 139 LPACS-------------VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGAD 185
           L  C+             VN+KGA LE SNMAGVNLRV TLK ANLQNC LR AVLAGAD
Sbjct: 282 LRGCNFEDPAGSRANMEGVNMKGAVLEESNMAGVNLRVGTLKYANLQNCTLRGAVLAGAD 341

Query: 186 LENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
           LE CDLSGSDL EANLRGANLKD  LELML PLHMSQ +R
Sbjct: 342 LEGCDLSGSDLQEANLRGANLKDTTLELMLNPLHMSQAIR 381

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113261|ref|XP_001651968.1| hypothetical protein AaeL_AAEL006374 [Aedes aegypti] gi|108877835|gb|EAT42060.1| AAEL006374-PA [Aedes aegypti]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 154/282 (54%), Positives = 185/282 (65%), Gaps = 62/282 (21%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
           MLA+MFA+       M P D D+ GAYLIDRS  YFEPILNYLR+GQL+ D +++PEG+L
Sbjct: 92  MLARMFAQEDA----MCPSDKDAQGAYLIDRSSQYFEPILNYLRHGQLIFDGHLSPEGIL 147

Query: 61  EEARFFGIESLVPQLMEIIMSRERSRDM--MPLSRRDVINALILTPITAELRFQGVNLAG 118
           EEA+FFGIE L+PQL E ++ ++++ +M  +PL+RRDVI+ALI T    ELRFQGVNLAG
Sbjct: 148 EEAKFFGIEGLIPQL-ESLVQQQQAANMEDLPLTRRDVISALIKTSHMTELRFQGVNLAG 206

Query: 119 SDLSRLDLRNINFKVR------------------------------------------KG 136
           +DL +LDLR+INFK                                            +G
Sbjct: 207 ADLRKLDLRHINFKYACLQRCNLSLANLNYCCLERADLSFANLEGAQLLSVKGLCANMEG 266

Query: 137 LTLPACS-------------VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAG 183
             L  C+             VNLKGA LE SNMAGVNLRVA L+NANL+NC+LRAAVLAG
Sbjct: 267 ANLQGCNFEDPSGVRSNLEGVNLKGACLENSNMAGVNLRVANLRNANLKNCNLRAAVLAG 326

Query: 184 ADLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
           ADLE C+LSGSDL EANLRGAN KDA LELMLTPLHMSQ +R
Sbjct: 327 ADLERCNLSGSDLQEANLRGANFKDAQLELMLTPLHMSQAIR 368

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
MGI|MGI:2145579	339	Kctd9 "potassium channel tetra	0.977	0.648	0.552	5.3e-56
RGD|1312010	339	Kctd9 "potassium channel tetra	0.977	0.648	0.552	5.3e-56
ZFIN|ZDB-GENE-050320-147	391	zgc:113115 "zgc:113115" [Danio	0.928	0.534	0.462	2.8e-41
ZFIN|ZDB-GENE-040718-238	389	kctd9 "potassium channel tetra	0.92	0.532	0.462	9.6e-41
FB|FBgn0037244	361	CG14647 [Drosophila melanogast	0.924	0.576	0.463	1.2e-40
DICTYBASE|DDB_G0291330	488	kctd9 "potassium channel tetra	0.88	0.405	0.456	1.1e-39
UNIPROTKB|Q5ZJ71	389	KCTD9 "Uncharacterized protein	0.92	0.532	0.449	2.3e-39
UNIPROTKB|F1MFU2	392	KCTD9 "Uncharacterized protein	0.92	0.528	0.453	6.1e-39
UNIPROTKB|F1PTL8	393	KCTD9 "Uncharacterized protein	0.92	0.526	0.453	6.1e-39
UNIPROTKB|Q7L273	389	KCTD9 "BTB/POZ domain-containi	0.92	0.532	0.453	6.1e-39

MGI|MGI:2145579 Kctd9 "potassium channel tetramerisation domain containing 9" [Mus musculus (taxid:10090)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 127/230 (55%), Positives = 154/230 (66%)

Query:     1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
             MLA MF    + G + N  D    GA+LIDRSP YFEPILNYLR+GQL+++  IN  GVL
Sbjct:   115 MLAHMF---KDKGVWGNKQD--HRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVL 169

Query:    61 EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAG-- 118
             EEARFFGI+SL+  L   I + +   D  P+SR++ +  L+ TP  +ELR Q  NL G  
Sbjct:   170 EEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQCANLQGVK 229

Query:   119 ---SDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCD 175
                S+     LR  NF+   GL       NLKG ++EGS M G+NLRVATLKNA L+NC+
Sbjct:   230 MLCSNAEGASLRLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCN 289

Query:   176 LRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
             LR A LAG DLENCDLSG DL EANLRG+N+K A  E MLTPLHMSQ+VR
Sbjct:   290 LRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR 339

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0051260 "protein homooligomerization" evidence=IEA

RGD|1312010 Kctd9 "potassium channel tetramerisation domain containing 9" [Rattus norvegicus (taxid:10116)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 127/230 (55%), Positives = 154/230 (66%)

Query:     1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
             MLA MF    + G + N  D    GA+LIDRSP YFEPILNYLR+GQL+++  IN  GVL
Sbjct:   115 MLAHMF---KDKGVWGNKQD--HRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVL 169

Query:    61 EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAG-- 118
             EEARFFGI+SL+  L   I + +   D  P+SR++ +  L+ TP  +ELR Q  NL G  
Sbjct:   170 EEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQCANLQGVK 229

Query:   119 ---SDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCD 175
                S+     LR  NF+   GL       NLKG ++EGS M G+NLRVATLKNA L+NC+
Sbjct:   230 MLCSNAEGASLRLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCN 289

Query:   176 LRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225
             LR A LAG DLENCDLSG DL EANLRG+N+K A  E MLTPLHMSQ+VR
Sbjct:   290 LRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR 339

GO:0051260 "protein homooligomerization" evidence=IEA

ZFIN|ZDB-GENE-050320-147 zgc:113115 "zgc:113115" [Danio rerio (taxid:7955)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 105/227 (46%), Positives = 139/227 (61%)

Query:     1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
             MLA MF E +   +       D  GA+LIDRSP YFEPILNYLR+GQ++++  IN  GVL
Sbjct:   115 MLAHMFREKAADVW---GNKQDERGAFLIDRSPEYFEPILNYLRHGQIIINDGINLLGVL 171

Query:    61 EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
             EEARFFGIE L  QL   I +     D  PLSR++ +  L+ TP  +ELR QG+N +G+D
Sbjct:   172 EEARFFGIEQLAEQLEVAIKNSHPPEDHSPLSRKEFVRFLLATPTKSELRCQGLNFSGAD 231

Query:   121 LSRLDLRNINFKV----RKGLTLP--ACS----VNLKGANLEGSNMAGVNLRVATLKNAN 170
             LSRLDLR INFK+    R  LT     CS     +L GANL+G+N+ GV +  +  + A+
Sbjct:   232 LSRLDLRYINFKMANLSRCNLTYANLCCSNLERADLSGANLDGANLQGVKMLCSNAEGAS 291

Query:   171 LQNCDLR-----AAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
             L+ C+        A L GA+L+  D+ GS +   NLR A LK+A L+
Sbjct:   292 LKGCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLK 338

GO:0051260 "protein homooligomerization" evidence=IEA

ZFIN|ZDB-GENE-040718-238 kctd9 "potassium channel tetramerisation domain containing 9" [Danio rerio (taxid:7955)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 105/227 (46%), Positives = 137/227 (60%)

Query:     1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
             MLA MF +    G        D  GAYLIDRSP YFEPILNYLR+GQL+++  IN  GVL
Sbjct:   115 MLAHMFRDKDVWG-----NKQDEQGAYLIDRSPDYFEPILNYLRHGQLIINDGINLLGVL 169

Query:    61 EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
             EEARFFGIE L  QL  +I + +   D  P+SR++    L+ TP  +ELR QG+N +G+D
Sbjct:   170 EEARFFGIERLAEQLEGVIKNSQPPDDHSPISRKEFARFLLATPTKSELRCQGLNFSGTD 229

Query:   121 LSRLDLRNINFKV----RKGLT-LPACSVNLK-----GANLEGSNMAGVNLRVATLKNAN 170
             LSRLDLR INFK+    R  LT    C  NL+      ANL+G+N+ GV +     + A+
Sbjct:   230 LSRLDLRYINFKMANLSRCNLTHANLCGTNLERADLSSANLDGANLQGVKMLCTNAEGAS 289

Query:   171 LQNCDLR-----AAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
             L+ C+        A L GA+L+  D+ GS +   NLR A LK+A L+
Sbjct:   290 LKGCNFEDPAGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLK 336

GO:0051260 "protein homooligomerization" evidence=IEA

FB|FBgn0037244 CG14647 [Drosophila melanogaster (taxid:7227)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 103/222 (46%), Positives = 134/222 (60%)

Query:     1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
             MLA+MF +       M P + D  GAYLIDRSP YFEPI+NYLR+GQ V D NI+  GVL
Sbjct:    86 MLARMFLQNGS----MKPSERDEQGAYLIDRSPRYFEPIINYLRHGQFVCDSNISVLGVL 141

Query:    61 EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
             EEARFFGI SLV  L E +  +E      PL+R DVI A+I T +  ELRFQGVNL+G+D
Sbjct:   142 EEARFFGIFSLVTHLEERLGQQETPLGDRPLTRNDVIKAIIQTSVITELRFQGVNLSGAD 201

Query:   121 LSRLDLRNINFKVRK----GLT---LPACSV---NLKGANLEGSNMAGVNLRVATLKNAN 170
             L +LD RNINFK        L+   L  C +   +L+ ANLE + +  V    A ++ AN
Sbjct:   202 LRKLDFRNINFKYANMSHCNLSHTNLNYCCLERADLQYANLECAQLVSVRGLCANMEGAN 261

Query:   171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
             L+ C+         +LE  +L G+ L  +N+ G NL+ A L+
Sbjct:   262 LRGCNFEDPTGVRTNLEGVNLKGACLESSNMAGVNLRVANLK 303

GO:0051260 "protein homooligomerization" evidence=IEA

DICTYBASE|DDB_G0291330 kctd9 "potassium channel tetramerization domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 99/217 (45%), Positives = 138/217 (63%)

Query:     1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
             MLAKMF+E  +    +N       GAYLIDRSP YF PILNYLR G +V+D ++N EGV 
Sbjct:   224 MLAKMFSESWDSAKDIN-------GAYLIDRSPDYFTPILNYLRCGTIVIDESLNVEGVY 276

Query:    61 EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
             +EARFF I  ++ +L  ++  + RS D+   +R+DVI+ L+ +   + LR QG+NLAG D
Sbjct:   277 QEARFFNITGMLDKLASLVERKSRSTDVF--TRKDVISILLTSSSNSSLRCQGLNLAGVD 334

Query:   121 LSRLDLRNINFKVR--KGLTLPACSVN---LKGANLEGSNMAGVNLRVATLKNANLQNCD 175
             LS+LDLRNINFK+   K   L  C+++   L+ A+L G+N+ G +LR + L  ANL++C 
Sbjct:   335 LSKLDLRNINFKMTNFKETNLSKCNLDNALLQEADLSGANLTGASLRGSNLTGANLEDCI 394

Query:   176 LRAAVL---AG--ADLENCDLSGSDLHEANLRGANLK 207
             L+ A      G  A LEN +   + L EAN  GANL+
Sbjct:   395 LKGANFEDRGGQRATLENVNFKNASLEEANFSGANLR 431

GO:0019953 "sexual reproduction" evidence=IEP

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|Q5ZJ71 KCTD9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 102/227 (44%), Positives = 138/227 (60%)

Query:     1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
             MLA MF +    G        D  GA+LIDRSP YFEPILNYLR+GQL+++  IN  GVL
Sbjct:   115 MLAHMFKDKDAWG-----NKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVL 169

Query:    61 EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
             EEARFFGI+SL+  L   I + + + D  P+SR++ +  L+ TP  +ELR QG+N +G+D
Sbjct:   170 EEARFFGIDSLIEHLEIAIKNSQPAEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGAD 229

Query:   121 LSRLDLRNINFKV----RKGLT-LPACSVNLKGANLEGS-----NMAGVNLRVATLKNAN 170
             LSRLDLR INFK+    R  L     C  NL+ A+L GS     N+ GV +  +  + A+
Sbjct:   230 LSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGAS 289

Query:   171 LQNCDLR-----AAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
             L+ C+        A L GA+L+  D+ GS +   NLR A LK+A L+
Sbjct:   290 LKGCNFEDPSGIKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLK 336

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|F1MFU2 KCTD9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 103/227 (45%), Positives = 139/227 (61%)

Query:     1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
             MLA MF    + G + N  D    GA+LIDRSP YFEPILNYLR+GQL+++  IN  GVL
Sbjct:   118 MLAHMF---KDKGVWGNKQD--HRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVL 172

Query:    61 EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
             EEARFFGI+SL+  L   I + +   D  P+SR++ +  L+ TP  +ELR QG+N +G+D
Sbjct:   173 EEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGAD 232

Query:   121 LSRLDLRNINFKV----RKGLT-LPACSVNLKGANLEGS-----NMAGVNLRVATLKNAN 170
             LSRLDLR INFK+    R  L     C  NL+ A+L GS     N+ GV +  +  + A+
Sbjct:   233 LSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGAS 292

Query:   171 LQNCDLR-----AAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
             L+ C+        A L GA+L+  D+ GS +   NLR A LK+A L+
Sbjct:   293 LKLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLK 339

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|F1PTL8 KCTD9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 103/227 (45%), Positives = 139/227 (61%)

Query:     1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
             MLA MF    + G + N  D    GA+LIDRSP YFEPILNYLR+GQL+++  IN  GVL
Sbjct:   119 MLAHMF---KDKGVWGNKQD--HRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVL 173

Query:    61 EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
             EEARFFGI+SL+  L   I + +   D  P+SR++ +  L+ TP  +ELR QG+N +G+D
Sbjct:   174 EEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGAD 233

Query:   121 LSRLDLRNINFKV----RKGLT-LPACSVNLKGANLEGS-----NMAGVNLRVATLKNAN 170
             LSRLDLR INFK+    R  L     C  NL+ A+L GS     N+ GV +  +  + A+
Sbjct:   234 LSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGAS 293

Query:   171 LQNCDLR-----AAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
             L+ C+        A L GA+L+  D+ GS +   NLR A LK+A L+
Sbjct:   294 LKLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLK 340

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|Q7L273 KCTD9 "BTB/POZ domain-containing protein KCTD9" [Homo sapiens (taxid:9606)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 103/227 (45%), Positives = 139/227 (61%)

Query:     1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
             MLA MF    + G + N  D    GA+LIDRSP YFEPILNYLR+GQL+++  IN  GVL
Sbjct:   115 MLAHMF---KDKGVWGNKQD--HRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVL 169

Query:    61 EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
             EEARFFGI+SL+  L   I + +   D  P+SR++ +  L+ TP  +ELR QG+N +G+D
Sbjct:   170 EEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGAD 229

Query:   121 LSRLDLRNINFKV----RKGLT-LPACSVNLKGANLEGS-----NMAGVNLRVATLKNAN 170
             LSRLDLR INFK+    R  L     C  NL+ A+L GS     N+ GV +  +  + A+
Sbjct:   230 LSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGAS 289

Query:   171 LQNCDLR-----AAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
             L+ C+        A L GA+L+  D+ GS +   NLR A LK+A L+
Sbjct:   290 LKLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLK 336

GO:0051260 "protein homooligomerization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SE95	FIP2_ARATH	No assigned EC number	0.3346	0.9155	0.6912	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	225
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	7e-18
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	2e-16
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	4e-16
PRK15197	291	PRK15197, PRK15197, secreted effector protein PipB	1e-13
pfam02214	92	pfam02214, K_tetra, K+ channel tetramerisation dom	2e-13
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	6e-13
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	3e-10
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	3e-10
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	2e-09
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	3e-09
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	1e-08
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	2e-08
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	5e-08
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	1e-07
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	2e-07
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	3e-07
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	4e-07
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	9e-07
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	1e-06
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	1e-06
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	1e-06
PRK15377	782	PRK15377, PRK15377, E3 ubiquitin-protein ligase So	1e-06
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	2e-06
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	2e-05
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	6e-05
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	1e-04
PRK15197	291	PRK15197, PRK15197, secreted effector protein PipB	1e-04
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	8e-04
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	0.004

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 78.8 bits (194), Expect = 7e-18
 Identities = 49/131 (37%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 91  LSRRDVINALILTPI-TAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS------ 143
           LS  D+ NA +     +      G +L G++L   +L   N            +      
Sbjct: 61  LSGADLSNANLRGADLSKGADLSGADLEGANLRGANLSGANLSGANLSNATRANLSGADL 120

Query: 144 --VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANL 201
              NL  ANL G+N++G NL  A L NANL   DL  A L+GADL   +LSG+DL  ANL
Sbjct: 121 SGANLSNANLTGANLSGANLNGANLSNANLSGADLSGADLSGADLSGANLSGADLRGANL 180

Query: 202 RGANLKDAALE 212
            GANL  A L 
Sbjct: 181 SGANLSGADLR 191

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 74.9 bits (184), Expect = 2e-16
 Identities = 40/101 (39%), Positives = 60/101 (59%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
             G +L+G++LS  +L   N            + NL GA+L G++++G +L  A L  A+
Sbjct: 115 LSGADLSGANLSNANLTGANLSGANLNGANLSNANLSGADLSGADLSGADLSGANLSGAD 174

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
           L+  +L  A L+GADL N +LSG+DL  A+L GANL +A L
Sbjct: 175 LRGANLSGANLSGADLRNANLSGADLSGADLTGANLVNANL 215

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 74.1 bits (182), Expect = 4e-16
 Identities = 47/119 (39%), Positives = 59/119 (49%), Gaps = 18/119 (15%)

Query: 109 LRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS-------------VNLKGANLEGSN 155
           L   G NL+G+DLS  +LR  +    KG  L                  NL GANL  + 
Sbjct: 54  LDLSGANLSGADLSNANLRGADL--SKGADLSGADLEGANLRGANLSGANLSGANLSNAT 111

Query: 156 MA---GVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
            A   G +L  A L NANL   +L  A L GA+L N +LSG+DL  A+L GA+L  A L
Sbjct: 112 RANLSGADLSGANLSNANLTGANLSGANLNGANLSNANLSGADLSGADLSGADLSGANL 170

Length = 238

>gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional

 Score = 68.0 bits (166), Expect = 1e-13
 Identities = 47/121 (38%), Positives = 63/121 (52%), Gaps = 11/121 (9%)

Query: 101 ILTPITAELRFQGVNLA-----GSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSN 155
           ++T     L  +GVNLA     G DLS +D  N +F+     TL   +VNL GANL  +N
Sbjct: 147 LITE-DGFLNLRGVNLAHKDFQGEDLSDIDASNADFR---ETTLS--NVNLVGANLCCAN 200

Query: 156 MAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELML 215
           +  VNL  + +  ANL + DL  A ++G +L    L GSDL +  L GA L   AL L  
Sbjct: 201 LHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTLAK 260

Query: 216 T 216
            
Sbjct: 261 A 261

Length = 291

>gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain

 Score = 63.3 bits (155), Expect = 2e-13
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 16 MNPGDVDSTGAYLIDRSPTYFEPILNYLR-NGQLVLDPNINPEGVLEEARFFGIESLV 72
                D T  Y  DRSP +FE ILN+ R  G+L     +  +  LEE  F+G+  L 
Sbjct: 31 RCDFYDDDTNEYFFDRSPKHFETILNFYRTGGKLHRPEEVCLDSFLEELEFYGLGELA 88

The N-terminal, cytoplasmic tetramerisation domain (T1) of voltage-gated K+ channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels. It is distantly related to the BTB/POZ domain pfam00651. Length = 92

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 65.3 bits (159), Expect = 6e-13
 Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 10/105 (9%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
                NL+G+DLS  DL   +              NL GA+L G+N++G NL  A L+NA
Sbjct: 144 NLSNANLSGADLSGADLSGADLS----------GANLSGADLRGANLSGANLSGADLRNA 193

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELM 214
           NL   DL  A L GA+L N +L G++L  ANL GA+L  A L  +
Sbjct: 194 NLSGADLSGADLTGANLVNANLGGANLFGANLLGADLSGATLGDV 238

Length = 238

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 53.5 bits (130), Expect = 3e-10
 Identities = 22/40 (55%), Positives = 26/40 (65%)

Query: 169 ANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKD 208
           ANL   +LR A L GADL   DL+G++L  ANL GANL  
Sbjct: 1   ANLSGANLRGADLRGADLSGADLTGANLSGANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 20/69 (28%), Positives = 31/69 (44%)

Query: 144 VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRG 203
            + +  + E  ++  VN   ATLKN N  NC L     +  DL + D + +DL  A    
Sbjct: 1   ADFRNCSFENCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTEADLKNAKFSN 60

Query: 204 ANLKDAALE 212
            +LK+    
Sbjct: 61  CDLKNVNFS 69

Length = 77

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 17 NPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLM 76
          +  + D +  YL D SP  F  +LN+L  G+L L    N E +LE A +  I  LV    
Sbjct: 32 DFKESDKSEIYLDDVSPEDFRALLNFLYTGKLDLPEE-NVEELLELADYLQIPGLVELCE 90

Query: 77 EIIMSRE 83
          E ++   
Sbjct: 91 EFLLKLL 97

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
           R QG+    ++L   DL+    +           +N + ANL G +++G NL  A L NA
Sbjct: 18  RLQGIRELKANLLGADLQGSELQ--------LGDLNFENANLSGLDLSGANLSGADLSNA 69

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           NL+  DL      GADL   DL G++L  ANL GANL  A L 
Sbjct: 70  NLRGADLS----KGADLSGADLEGANLRGANLSGANLSGANLS 108

Length = 238

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 125 DLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGA 184
           D RN +F+          + +LK  N   + +   N     L N N  +CDLR      A
Sbjct: 2   DFRNCSFE----------NCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTEA 51

Query: 185 DLENCDLSGSDLHEANLRGANLKDAAL 211
           DL+N   S  DL   N  G +LKD   
Sbjct: 52  DLKNAKFSNCDLKNVNFSG-SLKDCDF 77

Length = 77

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 48.9 bits (118), Expect = 2e-08
 Identities = 21/36 (58%), Positives = 23/36 (63%)

Query: 174 CDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDA 209
            +L  A L GADL   DLSG+DL  ANL GANL  A
Sbjct: 1   ANLSGANLRGADLRGADLSGADLTGANLSGANLSGA 36

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 51.9 bits (124), Expect = 5e-08
 Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 11/107 (10%)

Query: 113 GVNLAGSDLSRLDLRNINFKVRKGLTLPACSV---NLKGANLEGSNMAGVNLRVATLKNA 169
           G NL G+ L   D    NFK   G  L   S+   N K A LE S M G  L  A L  A
Sbjct: 176 GANLEGAVLFMADCEGANFK---GANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGA 232

Query: 170 NLQN-----CDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
           NLQ+     C +     +GA++++ +LSG+ L  A++ GA L+ A +
Sbjct: 233 NLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATI 279

Length = 350

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 30/131 (22%)

Query: 111 FQGVNLAGSDL-----------------SRLDLRNINFKVRKGLTLPACSV---NLKGAN 150
           F+G NL+G+ L                 + LD  N+     +  +L  CS+   N  GAN
Sbjct: 194 FKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIECNCSGAN 253

Query: 151 LEGSNMAG-----VNLRVATLKNANLQNCDLRAAVLAGADLE-----NCDLSGSDLHEAN 200
           ++ +N++G      ++  ATL+ A +    +  AVL  A+L      + +L G+DL EAN
Sbjct: 254 MDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEAN 313

Query: 201 LRGANLKDAAL 211
           L     KD  L
Sbjct: 314 LNNTCFKDCTL 324

Length = 350

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
            F+  +L   + S   L+N NF           +  L   N    ++  V+   A LKNA
Sbjct: 7   SFENCDLKNVNFSNATLKNCNFS----------NCKLFNVNFSDCDLRDVDFTEADLKNA 56

Query: 170 NLQNCDLRAAVLAGADLENCDL 191
              NCDL+    +G  L++CD 
Sbjct: 57  KFSNCDLKNVNFSG-SLKDCDF 77

Length = 77

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 15/85 (17%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
            F+  +    DL      N+NF           +  LK  N     +  VN     L++ 
Sbjct: 2   DFRNCSFENCDLK-----NVNF----------SNATLKNCNFSNCKLFNVNFSDCDLRDV 46

Query: 170 NLQNCDLRAAVLAGADLENCDLSGS 194
           +    DL+ A  +  DL+N + SGS
Sbjct: 47  DFTEADLKNAKFSNCDLKNVNFSGS 71

Length = 77

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 45.1 bits (108), Expect = 4e-07
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 154 SNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSG 193
           +N++G NLR A L+ A+L   DL  A L+GA+L   +LSG
Sbjct: 1   ANLSGANLRGADLRGADLSGADLTGANLSGANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 48.5 bits (115), Expect = 9e-07
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 17/106 (16%)

Query: 115 NLAGSDLSRLDLRNINFKVRKGLTLPACS-VNLKGANLEGSNMAGVNLRV---------- 163
           NL  +DLS  +L          L +  C   N KGANL G+++   N +           
Sbjct: 168 NLCDADLSGANLEG------AVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCG 221

Query: 164 ATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDA 209
           ATL +ANL   +L+ A L G  +  C+ SG+++   NL GA L  A
Sbjct: 222 ATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRA 267

Length = 350

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 43.5 bits (104), Expect = 1e-06
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 160 NLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDL 196
           NL  A L+ A+L+  DL  A L GA+L   +LSG++L
Sbjct: 2   NLSGANLRGADLRGADLSGADLTGANLSGANLSGANL 38

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 43.5 bits (104), Expect = 1e-06
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 179 AVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           A L+GA+L   DL G+DL  A+L GANL  A L 
Sbjct: 1   ANLSGANLRGADLRGADLSGADLTGANLSGANLS 34

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 20/106 (18%)

Query: 113 GVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGS----------NMAGVNLR 162
           G+NL G+ L+  +L   N           C  +L GANLEG+          N  G NL 
Sbjct: 151 GMNLKGAVLTGANLTAENL----------CDADLSGANLEGAVLFMADCEGANFKGANLS 200

Query: 163 VATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKD 208
             +L ++N +N  L  +++ GA L++ +L+G++L  A+L G ++ +
Sbjct: 201 GTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIE 246

Length = 350

>gnl|CDD|185275 PRK15377, PRK15377, E3 ubiquitin-protein ligase SopA; Provisional

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 114 VNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQN 173
           +  A  D S  D RNINF        P+  +   G  ++G N +      + + + +   
Sbjct: 190 LTYADRDFSNADFRNINFSK----INPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDE 245

Query: 174 CDLRAAVLAGADLENCDLSGSDLHEANLRGA 204
           C    + L+     N   S SD++EA+L+ +
Sbjct: 246 CRFTYSTLSDVVCSNTKFSNSDMNEASLKYS 276

Length = 782

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 134 RKGLTLPACSVNLK---GANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCD 190
           R   +LP  SV L    G NL+G+ + G NL    L +A+L   +L  AVL  AD E  +
Sbjct: 134 RCEFSLPQDSVILTAQGGMNLKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGAN 193

Query: 191 LSGSDLHEANLRGANLKDAALE 212
             G++L   +L  +N K+A LE
Sbjct: 194 FKGANLSGTSLGDSNFKNACLE 215

Length = 350

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 40.4 bits (96), Expect = 2e-05
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 144 VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLR 177
            NL+GA+L G++++G +L  A L  ANL   +L 
Sbjct: 6   ANLRGADLRGADLSGADLTGANLSGANLSGANLS 39

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 43.1 bits (101), Expect = 6e-05
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 145 NLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLS-----GSDLHEA 199
           NL  A+L G+N+ G  L +A  + AN +  +L    L  ++ +N  L      G+ L  A
Sbjct: 168 NLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHA 227

Query: 200 NLRGANLKDAAL 211
           NL GANL+ A+L
Sbjct: 228 NLTGANLQHASL 239

Length = 350

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 142 CSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANL 201
            S  L+G     +N+ G +L         L + +   A L+G DL   +LSG+DL  ANL
Sbjct: 15  ESSRLQGIRELKANLLGADL---QGSELQLGDLNFENANLSGLDLSGANLSGADLSNANL 71

Query: 202 RGANLKDAA 210
           RGA+L   A
Sbjct: 72  RGADLSKGA 80

Length = 238

>gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 130 NFKVRKGLTLPACSVNLKGANL-----EGSNMAGVNLRVATLKNANLQNCDLRAAVLAGA 184
           N +    L      +NL+G NL     +G +++ ++   A  +   L N +L  A L  A
Sbjct: 140 NIQQPDSLITEDGFLNLRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCA 199

Query: 185 DLENCDLSGSDLHEANLRGANLKDAAL 211
           +L   +L GS     N+  ANL  A L
Sbjct: 200 NLHAVNLMGS-----NMTKANLTHADL 221

Length = 291

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 35.8 bits (84), Expect = 8e-04
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 10/48 (20%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAG 158
             G NL G+DL   DL   +              NL GANL G+N++G
Sbjct: 3   LSGANLRGADLRGADLSGADLT----------GANLSGANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 115 NLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNC 174
           NL+G+ L R D+     +             +  A +EG+ +   NLR A+  + NL   
Sbjct: 258 NLSGATLIRADMSGATLQ----------GATIMAAIMEGAVLTRANLRKASFISTNLDGA 307

Query: 175 DLRAAVLAGADLENCDLSGSDLHEANL 201
           DL  A L     ++C L+     +A +
Sbjct: 308 DLAEANLNNTCFKDCTLTHLRTEDATM 334

Length = 350

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG1665|consensus	302		100.0
PRK15196	350	secreted effector protein PipB2; Provisional	99.87
PRK15196	350	secreted effector protein PipB2; Provisional	99.87
PRK09718	512	hypothetical protein; Validated	99.82
PRK15197	291	secreted effector protein PipB; Provisional	99.8
PRK15197	291	secreted effector protein PipB; Provisional	99.79
PRK09718	512	hypothetical protein; Validated	99.78
COG1357	238	Pentapeptide repeats containing protein [Function	99.72
PRK15377	782	E3 ubiquitin-protein ligase SopA; Provisional	99.7
KOG1665|consensus	302		99.7
PRK15377	782	E3 ubiquitin-protein ligase SopA; Provisional	99.66
KOG2715|consensus	210		99.63
PF13599	78	Pentapeptide_4: Pentapeptide repeats (9 copies); P	99.39
KOG2716|consensus	230		99.18
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	99.13
KOG2714|consensus	465		98.91
KOG2723|consensus	221		98.81
KOG4390|consensus	632		97.45
KOG3713|consensus	477		97.4
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	95.77
KOG3840|consensus	438		91.23
PHA02790	480	Kelch-like protein; Provisional	85.61
PHA03098	534	kelch-like protein; Provisional	83.75

>KOG1665|consensus

Probab=100.00  E-value=1.3e-42  Score=265.29  Aligned_cols=219  Identities=52%  Similarity=0.722  Sum_probs=165.0

Q ss_pred             CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHH---
Q psy17757          1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLME---   77 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~---   77 (225)
                      ||+.||++.      ++++++++.|.|||||+|.||++||||||.|+++..+.+..-++|+||+||++-.+...+++   
T Consensus        35 MLa~MF~~~------g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~~~~  108 (302)
T KOG1665|consen   35 MLAAMFSGR------GAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLEDSRK  108 (302)
T ss_pred             HHHHHHccC------CCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhhhcc
Confidence            899999999      58999999999999999999999999999999999888889999999999998766665543   


Q ss_pred             ----------------HHHhhcccCCCCCcchhhhhhhhhcc-----CCCCCceeecccccCCcccccccccceeeecc-
Q psy17757         78 ----------------IIMSRERSRDMMPLSRRDVINALILT-----PITAELRFQGVNLAGSDLSRLDLRNINFKVRK-  135 (225)
Q Consensus        78 ----------------~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~-  135 (225)
                                      .++-++..+.+++|+++|++..+|+.     +.+..|.|.+++|.-|.|+++++.++.|+.+. 
T Consensus       109 e~pe~~~pltR~diik~iqT~elRfqGvNlSGaDLskLDlr~inFkyA~ls~c~lshtNL~ca~lerADl~gsil~cA~L  188 (302)
T KOG1665|consen  109 EVPEVEAPLTRIDIIKCIQTEELRFQGVNLSGADLSKLDLRLINFKYANLSNCNLSHTNLQCAKLERADLEGSILHCAIL  188 (302)
T ss_pred             CCCcCCCCccHHHHHHHhhhhheeeecccccccchhhcccccccceehhhccccccccchhhhhhcccccccchhhhhhh
Confidence                            23233334444444444444443333     33333333333333333333333333333321 


Q ss_pred             -----------ccc-------------cccccceecCccccCCcccCccccccccCceeecccccccccccCcccCcccc
Q psy17757        136 -----------GLT-------------LPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDL  191 (225)
Q Consensus       136 -----------~~~-------------~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f  191 (225)
                                 ++.             .+..++++++|+|.++++.+++++.|+|+++++++|++.+|.+.++++++|+|
T Consensus       189 ~~v~~lcaN~eGA~L~gcNfedps~~kaNLeganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnl  268 (302)
T KOG1665|consen  189 REVEMLCANAEGASLKGCNFEDPSGLKANLEGANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNL  268 (302)
T ss_pred             hhhhheecccccccccCcCCCCccchhccccccccccccccccccccceeEeccccccccccCccccccccCCccccCCC
Confidence                       111             22226777777777788888888888999999999999999999999999999


Q ss_pred             cCCCcCCccccCCcccccccccccccccccccCC
Q psy17757        192 SGSDLHEANLRGANLKDAALELMLTPLHMSQTVR  225 (225)
Q Consensus       192 ~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~  225 (225)
                      +||++.+|++++++++++.++..++|+|+++.||
T Consensus       269 sG~dLQeAnLRg~Nlk~A~~e~mltplhMsqaiR  302 (302)
T KOG1665|consen  269 SGADLQEANLRGVNLKEAHMEAMLTPLHMSQAIR  302 (302)
T ss_pred             CCcchhHhhcccCchhhHHHHhhccchhhccccC
Confidence            9999999999999999999999999999999998

>PRK15196 secreted effector protein PipB2; Provisional

Probab=99.87  E-value=4.3e-23  Score=173.64  Aligned_cols=128  Identities=18%  Similarity=0.263  Sum_probs=49.4

Q ss_pred             CCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCcccccccc
Q psy17757         87 DMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATL  166 (225)
Q Consensus        87 ~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l  166 (225)
                      .+++|.++.|.+++|.++.|.++.|.+++|.+|+|++++|.+++|.+|.+.++.+.+++|.+++|.+++|.+++|.+++|
T Consensus       195 ~~AnLs~a~f~~a~L~~A~L~~a~l~~A~f~~~nLs~a~L~~a~L~~a~l~~anL~gAnL~~a~f~~a~L~~anfs~A~L  274 (350)
T PRK15196        195 KGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATL  274 (350)
T ss_pred             cCcchhhhhhccCccccceecccccceeEccCCEEeccchhhhhhcCcccccccccccccccccccccccccCccccccc
Confidence            33333333333333333333333333333333444333333333333333333333333333333333333333333333


Q ss_pred             Cceee----------cccccccccccCcccCcccccCCCcCCccccCCcccccccccc
Q psy17757        167 KNANL----------QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELM  214 (225)
Q Consensus       167 ~~~~f----------~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~~~  214 (225)
                      ++++|          .+|+|++++|.+++|++++|++++|.+++|++++++++++.++
T Consensus       275 ~~a~f~~a~L~~A~f~~A~L~~Adf~~a~L~gadfs~A~L~~a~f~~a~l~~~~~~~~  332 (350)
T PRK15196        275 QGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTLTHLRTEDA  332 (350)
T ss_pred             cccccccceecccccceeeccccEeeCCEecCCCCCCCccCCCccCCCCcccceecCc
Confidence            33333          3333333333333333333444444444444444444444444

>PRK15196 secreted effector protein PipB2; Provisional

Probab=99.87  E-value=3e-23  Score=174.55  Aligned_cols=14  Identities=29%  Similarity=0.147  Sum_probs=7.9

Q ss_pred             CCCChHHHHHHHHh
Q psy17757         32 SPTYFEPILNYLRN   45 (225)
Q Consensus        32 d~~~F~~iL~~lr~   45 (225)
                      ++.-|..|..-+++
T Consensus       120 ~~~~f~~~~~~~~~  133 (350)
T PRK15196        120 PLASFEKICRALLF  133 (350)
T ss_pred             CHHHHHHHHHHHHH
Confidence            44446666665555

>PRK09718 hypothetical protein; Validated

Probab=99.82  E-value=4.7e-21  Score=162.86  Aligned_cols=94  Identities=18%  Similarity=0.269  Sum_probs=77.9

Q ss_pred             ccccccccceeeeccccccccccceecCccccCCcccCccccccccCceeecccccccccccCccc---CcccccCCCcC
Q psy17757        121 LSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADL---ENCDLSGSDLH  197 (225)
Q Consensus       121 f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l---~~~~f~~~~l~  197 (225)
                      |.++.+.++.|.+|++.++.+.++.+.++.|.+|.|.+++|.++.|+++.|.+|+|.+|+|.+|+|   +++.|.+|+|.
T Consensus       142 FarA~L~rvsFinCKLsGAdFSgA~Lk~V~FsdCnL~yAnFsgAnLskA~F~gCDLseAdFSEcdLS~aKka~F~~cDLt  221 (512)
T PRK09718        142 FKCRRLHNVIFIKASGEYVDFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLT  221 (512)
T ss_pred             cccceecceEEEeccccCcccccCccCCcEEeeeEecccCCCCCcCCCCEEeCccCCcCCccCCccCCCCCCEEeCCCCC
Confidence            333445556777777777777788888888899999999999999999999999999999999998   68888888888


Q ss_pred             CccccCCcccccccccc
Q psy17757        198 EANLRGANLKDAALELM  214 (225)
Q Consensus       198 ~a~~~~~~l~~~~~~~~  214 (225)
                      +++|.+|+|++++|..|
T Consensus       222 ~AdF~qT~LkgVDFSdC  238 (512)
T PRK09718        222 AVMFDHVRISTGNFKDC  238 (512)
T ss_pred             CCCcCCCcCCCcccccc
Confidence            88888888888888865

>PRK15197 secreted effector protein PipB; Provisional

Probab=99.80  E-value=4.4e-20  Score=150.58  Aligned_cols=70  Identities=29%  Similarity=0.389  Sum_probs=37.0

Q ss_pred             cceecCccccCCcccCccccccccCceeecccccccccccCcccCcccccCCCcCCc-cccCCcccccccc
Q psy17757        143 SVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEA-NLRGANLKDAALE  212 (225)
Q Consensus       143 ~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a-~~~~~~l~~~~~~  212 (225)
                      +++|.+++|.+++|.+++|.+++|.+++|.++.|.+|+|.+++|.+++|.+++|.++ +|.+++|+++++.
T Consensus       203 ~A~f~~a~f~~Anf~~AdL~~A~Ls~A~L~gA~L~gAdLs~A~L~gAnL~~A~L~~a~~L~gad~~ga~~t  273 (291)
T PRK15197        203 AVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTLAKALTGADLTGSQHT  273 (291)
T ss_pred             ccchhhhhhhhceeccCcCceeecCccCcCCCEeCCCCcCCCCCCCCCCCccccccCCCCCCCcccCCccC
Confidence            444555555555555555555555555555555555555555555555555555555 5555555555554

>PRK15197 secreted effector protein PipB; Provisional

Probab=99.79  E-value=6e-20  Score=149.81  Aligned_cols=116  Identities=29%  Similarity=0.371  Sum_probs=69.3

Q ss_pred             CCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccccCc
Q psy17757         89 MPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKN  168 (225)
Q Consensus        89 ~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~  168 (225)
                      ++|++++|.+++|.++.|.+++|.+++|.+++|++++|.+++|.          +++|.+++|.+++|.+++|.+++|++
T Consensus       154 ldL~g~DLs~adL~gadLsgadLs~A~F~gAnL~~a~LsgA~L~----------~AnL~~A~f~~a~f~~Anf~~AdL~~  223 (291)
T PRK15197        154 LNLRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLC----------CANLHAVNLMGSNMTKANLTHADLTC  223 (291)
T ss_pred             ccCCCCCCCCCCCCCCcCCCCcccCccccccCcCCccccccccC----------CcEecccchhhhhhhhceeccCcCce
Confidence            44444555554555555555555555555555555555555555          66666666666666666666666666


Q ss_pred             eeecccccccccccCcccCcccccCCCcCCccccCC-cccccccccc
Q psy17757        169 ANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGA-NLKDAALELM  214 (225)
Q Consensus       169 ~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~-~l~~~~~~~~  214 (225)
                      ++|.+++|.+|.|.+++|++++|.+++|.+++|.++ +|++++|+++
T Consensus       224 A~Ls~A~L~gA~L~gAdLs~A~L~gAnL~~A~L~~a~~L~gad~~ga  270 (291)
T PRK15197        224 ANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTLAKALTGADLTGS  270 (291)
T ss_pred             eecCccCcCCCEeCCCCcCCCCCCCCCCCccccccCCCCCCCcccCC
Confidence            666666666666666666666666666666666666 6666666655

>PRK09718 hypothetical protein; Validated

Probab=99.78  E-value=3.5e-20  Score=157.62  Aligned_cols=70  Identities=13%  Similarity=0.297  Sum_probs=29.5

Q ss_pred             cceecCccccCCcccCccccccccCceeecccccccccccCcccCcccccCCCc---CCccccCCcccccccc
Q psy17757        143 SVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDL---HEANLRGANLKDAALE  212 (225)
Q Consensus       143 ~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l---~~a~~~~~~l~~~~~~  212 (225)
                      +|.+.+++|.++.+.++.|.+|.|..++|.+|+|+++.|.+|+|.+|+|++|+|   +++.|.+++|.+++|.
T Consensus       154 nCKLsGAdFSgA~Lk~V~FsdCnL~yAnFsgAnLskA~F~gCDLseAdFSEcdLS~aKka~F~~cDLt~AdF~  226 (512)
T PRK09718        154 KASGEYVDFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFD  226 (512)
T ss_pred             eccccCcccccCccCCcEEeeeEecccCCCCCcCCCCEEeCccCCcCCccCCccCCCCCCEEeCCCCCCCCcC
Confidence            333333333333333334444444444444444444444444444444444444   3444444444444444

>COG1357 Pentapeptide repeats containing protein [Function unknown]

Probab=99.72  E-value=1e-17  Score=135.00  Aligned_cols=53  Identities=21%  Similarity=0.149  Sum_probs=22.4

Q ss_pred             CCCCCcchhhhhhhhhccCCCCCceee---cccccCCcccccccccceeeeccccc
Q psy17757         86 RDMMPLSRRDVINALILTPITAELRFQ---GVNLAGSDLSRLDLRNINFKVRKGLT  138 (225)
Q Consensus        86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~---~~~l~~~~f~~~~l~~~~f~~~~~~~  138 (225)
                      +.+++|.++++.++++.++++.+++|.   +++|.+++|++++|++++|.++.+.+
T Consensus        82 l~~~~l~~~~l~~a~l~~anl~~~~l~~~~~a~l~~a~l~~a~l~~a~l~~a~l~~  137 (238)
T COG1357          82 LSGADLEGANLRGANLSGANLSGANLSNATRANLSGADLSGANLSNANLTGANLSG  137 (238)
T ss_pred             CCCCcccccccCccccCCCcccCCCcccccccCcCCCCCCcCccccCccCcCccCC
Confidence            344444444444444444444444444   34444444444444444444443333

>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional

Probab=99.70  E-value=1.4e-17  Score=148.56  Aligned_cols=99  Identities=13%  Similarity=0.060  Sum_probs=52.1

Q ss_pred             CCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccce-eeeccccccccccceecCccccCCcccCcccccc
Q psy17757         86 RDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNIN-FKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVA  164 (225)
Q Consensus        86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~-f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a  164 (225)
                      +.++++.++.+.++++.+++|.+++|.+|+|++++|++++|++++ |++|++.++.+.+|+|.++.|.+|+|.+++|.++
T Consensus       177 Ls~Adl~~A~Le~vdFsg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A  256 (782)
T PRK15377        177 LTDARLRQEAGEELTYADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDV  256 (782)
T ss_pred             cccCccccCcCccCCcCCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcC
Confidence            444455555555555555555555555555555555555555555 5544444444445555555555555555555555


Q ss_pred             ccCceeecccccccccccCc
Q psy17757        165 TLKNANLQNCDLRAAVLAGA  184 (225)
Q Consensus       165 ~l~~~~f~~~~l~~a~f~~~  184 (225)
                      .|.+++|.+|+|.+|+|.++
T Consensus       257 ~L~~AdFsgAdLkgADLSgS  276 (782)
T PRK15377        257 VCSNTKFSNSDMNEASLKYS  276 (782)
T ss_pred             EeCCCEecCCCCCCCCCCCC
Confidence            55555555555555555555

>KOG1665|consensus

Probab=99.70  E-value=5.4e-18  Score=130.44  Aligned_cols=73  Identities=32%  Similarity=0.474  Sum_probs=30.7

Q ss_pred             ccccceecCccccCCcccCccccccccCceeecccccccccccCcccCcccccCCCcCCccccCCccccccccc
Q psy17757        140 PACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALEL  213 (225)
Q Consensus       140 ~~~~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~~  213 (225)
                      .++++++.++++..++|.++++.+++++++++.++++.+|+|+++++..+++.++++++|.+. +.+.++.+++
T Consensus       227 ~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnlsG~dLQeAnLRg~Nlk~A~~e-~mltplhMsq  299 (302)
T KOG1665|consen  227 DMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNLSGADLQEANLRGVNLKEAHME-AMLTPLHMSQ  299 (302)
T ss_pred             cccccccccceeEeccccccccccCccccccccCCccccCCCCCcchhHhhcccCchhhHHHH-hhccchhhcc
Confidence            333334444444444444444444444444444444444444444444444444444444444 4444444443

>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional

Probab=99.66  E-value=1.6e-17  Score=148.26  Aligned_cols=81  Identities=15%  Similarity=0.151  Sum_probs=29.8

Q ss_pred             CcchhhhhhhhhccCCCCCceeecccccCCc-ccccccccceeeeccccccccccceecCccccCCcccCccccccccCc
Q psy17757         90 PLSRRDVINALILTPITAELRFQGVNLAGSD-LSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKN  168 (225)
Q Consensus        90 ~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~-f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~  168 (225)
                      +|.+++|.+++|.+++|.+++|.++.|.+++ |.+|+|.+++|.+|++.++.+.+|+|.+++|.+|+|.+++|.+|+|.+
T Consensus       191 dFsg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~AdFsgAdLkg  270 (782)
T PRK15377        191 TYADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNE  270 (782)
T ss_pred             CcCCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcCEeCCCEecCCCCCC
Confidence            3333333333333333333333333333333 333333333333333333333333333333333333333333333333


Q ss_pred             ee
Q psy17757        169 AN  170 (225)
Q Consensus       169 ~~  170 (225)
                      ++
T Consensus       271 AD  272 (782)
T PRK15377        271 AS  272 (782)
T ss_pred             CC
Confidence            33

>KOG2715|consensus

Probab=99.63  E-value=3.7e-16  Score=114.96  Aligned_cols=80  Identities=46%  Similarity=0.769  Sum_probs=74.2

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHHHh
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMS   81 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~~~   81 (225)
                      |++++|++.     +.|++.|+.|+|||||||.+|.+||||+|.|++.+++ +..+++|.||+||++..+++.+++.+.+
T Consensus        47 l~rl~q~~~-----~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~-l~eeGvL~EAefyn~~~li~likd~i~d  120 (210)
T KOG2715|consen   47 LYRLCQREK-----DLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK-LSEEGVLEEAEFYNDPSLIQLIKDRIQD  120 (210)
T ss_pred             HHHHHhccc-----CCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh-hhhhccchhhhccCChHHHHHHHHHHHH
Confidence            788999998     8999999999999999999999999999999999988 7889999999999999999999999987


Q ss_pred             hcccCC
Q psy17757         82 RERSRD   87 (225)
Q Consensus        82 ~~~~~~   87 (225)
                      .+..+.
T Consensus       121 Rd~~~t  126 (210)
T KOG2715|consen  121 RDAMVT  126 (210)
T ss_pred             Hhhhcc
Confidence            775443

>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A

Probab=99.39  E-value=2.5e-13  Score=90.50  Aligned_cols=31  Identities=26%  Similarity=0.588  Sum_probs=11.4

Q ss_pred             ecccccccccccCcccCcccccCCCcCCccc
Q psy17757        171 LQNCDLRAAVLAGADLENCDLSGSDLHEANL  201 (225)
Q Consensus       171 f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~  201 (225)
                      |.+|.|.++.|.++++.++.|.+++|.+++|
T Consensus        39 f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f   69 (78)
T PF13599_consen   39 FSNCQLDNSDFSNCDLKRASFSNCDLDNCDF   69 (78)
T ss_dssp             ETTEBETTEBETTSBETTEEETTEB-TTEEE
T ss_pred             EECCCCCCCEEEeCEEeCCEEecCCccCCEe
Confidence            3333333333333333333333333333333

...

>KOG2716|consensus

Probab=99.18  E-value=1.9e-11  Score=96.43  Aligned_cols=74  Identities=31%  Similarity=0.556  Sum_probs=65.3

Q ss_pred             CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCC-hHhHHhhhhccCcccchHHHHHHH
Q psy17757          1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNIN-PEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~-~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      |+++|+..+.       +.+.++.|.+||||.|.+|+.|||++|.|.+.++.... ...++.||+||.++.|++.++..+
T Consensus        29 ~fk~m~e~~i-------~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i  101 (230)
T KOG2716|consen   29 FFKTMLETDI-------PVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAI  101 (230)
T ss_pred             HHHHHhhcCC-------ccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            5788888875       78999999999999999999999999999999876554 578999999999999999998876


Q ss_pred             Hh
Q psy17757         80 MS   81 (225)
Q Consensus        80 ~~   81 (225)
                      ..
T Consensus       102 ~~  103 (230)
T KOG2716|consen  102 AR  103 (230)
T ss_pred             hh
Confidence            33

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=99.13  E-value=1.3e-11  Score=85.45  Aligned_cols=65  Identities=45%  Similarity=0.784  Sum_probs=49.8

Q ss_pred             CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHh-CCcccCCCCChHhHHhhhhccCcccc
Q psy17757          1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRN-GQLVLDPNINPEGVLEEARFFGIESL   71 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~-g~i~l~~~~~~~~vl~ea~F~~~~~l   71 (225)
                      +|++|++++      ......+++++|||||||.+|++||+|+|. +.++.+.......+++||+||++..+
T Consensus        24 ~l~~~~~~~------~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l   89 (94)
T PF02214_consen   24 LLARLFSGE------RSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDEL   89 (94)
T ss_dssp             TTTSHHHTG------HGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHH
T ss_pred             hhhhHHhhc------cccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCcc
Confidence            466777765      125677899999999999999999999999 67766667778999999999999765

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>KOG2714|consensus

Probab=98.91  E-value=1.4e-09  Score=91.73  Aligned_cols=66  Identities=36%  Similarity=0.630  Sum_probs=55.2

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHH-hhhhccCcccchHHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL-EEARFFGIESLVPQL   75 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl-~ea~F~~~~~l~~~l   75 (225)
                      |..+++++.       .+.+++.+++||||||..|.+||++||+|.+++.. ...+.+| +||.||++..+.+.+
T Consensus        38 fsaL~s~~~-------~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g-~~~~~llhdEA~fYGl~~llrrl  104 (465)
T KOG2714|consen   38 FSALLSGRI-------NSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASG-VFPERLLHDEAMFYGLTPLLRRL  104 (465)
T ss_pred             HHHHhcCcc-------ccccCCCCceEecCCchHHHHHHHHHhcCCCCCcc-CchhhhhhhhhhhcCcHHHHHHh
Confidence            456777764       89999999999999999999999999999999944 5555544 599999999887743

>KOG2723|consensus

Probab=98.81  E-value=4.4e-09  Score=82.50  Aligned_cols=72  Identities=39%  Similarity=0.582  Sum_probs=60.2

Q ss_pred             CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCC-hHhHHhhhhccCcccchHHHHHHH
Q psy17757          1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNIN-PEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~-~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      ||+.||.++.       +..++..|.||||||+..|++||++||..+..++.... ...+.+||+||++..+...+.+..
T Consensus        34 ~L~~~f~~~~-------~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l~~~~  106 (221)
T KOG2723|consen   34 MLARMFSGEL-------PLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYLLNSG  106 (221)
T ss_pred             HHHhhcCCCC-------CccccccccEEEcCCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHHhccc
Confidence            7899999965       89999999999999999999999999997777766554 567889999999997666444333

>KOG4390|consensus

Probab=97.45  E-value=5.5e-05  Score=63.75  Aligned_cols=47  Identities=34%  Similarity=0.656  Sum_probs=40.8

Q ss_pred             CCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCc
Q psy17757         22 DSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGI   68 (225)
Q Consensus        22 ~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~   68 (225)
                      .+.|+||+||||.+|++||++.|.|+++.+........=+|-.||++
T Consensus        77 ~dt~eYFFDRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDeELaF~Gl  123 (632)
T KOG4390|consen   77 EDTGEYFFDRDPDIFRHVLNFYRTGKLHYPRHECISAYDEELAFYGL  123 (632)
T ss_pred             CCcccccccCChHHHHHHHHHhhcCcccCchHHHHHHhhhhhhHhcc
Confidence            46899999999999999999999999998776666666677788876

>KOG3713|consensus

Probab=97.40  E-value=0.00013  Score=63.33  Aligned_cols=49  Identities=33%  Similarity=0.650  Sum_probs=45.7

Q ss_pred             CCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccc
Q psy17757         23 STGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESL   71 (225)
Q Consensus        23 ~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l   71 (225)
                      ...+||.||+|..|.+|+++.+.|+++.+..+......+|-+|.+++..
T Consensus        79 ~~~EyfFDR~P~~F~~Vl~fYrtGkLH~p~~vC~~~F~eEL~yWgI~~~  127 (477)
T KOG3713|consen   79 VTNEYFFDRHPGAFAYVLNFYRTGKLHVPADVCPLSFEEELDYWGIDEA  127 (477)
T ss_pred             ccCeeeeccChHHHHHHHHHHhcCeeccccccchHHHHHHHHHhCCChh
Confidence            4789999999999999999999999999999999999999999998653

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=95.77  E-value=0.0033  Score=41.56  Aligned_cols=63  Identities=32%  Similarity=0.497  Sum_probs=48.0

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVP   73 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~   73 (225)
                      +++||++..        .........+.+.++..|+.+|+|+..+.+.+... ....++..|++++++.+..
T Consensus        25 f~~~~~~~~--------~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~-~~~~l~~~a~~~~~~~l~~   87 (90)
T smart00225       25 FKALFSGDF--------KESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEE-NVEELLELADYLQIPGLVE   87 (90)
T ss_pred             HHHHHcCCC--------ccCCCCEEEecCCCHHHHHHHHHeecCceeecCHH-HHHHHHHHHHHHCcHHHHh
Confidence            567777664        11244555666889999999999999998877664 6678999999999876654

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG3840|consensus

Probab=91.23  E-value=0.15  Score=42.23  Aligned_cols=62  Identities=18%  Similarity=0.433  Sum_probs=51.7

Q ss_pred             CHHHHhccCCCCCccCCCCccCCCCCEEEcC--CCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCc
Q psy17757          1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDR--SPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGI   68 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidr--d~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~   68 (225)
                      ||..||.++.      .....+|+|+|=+--  -...|+.||.|.+.|-+..++.+..-.+-+.|+|--+
T Consensus       121 mlg~mf~~g~------~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLli  184 (438)
T KOG3840|consen  121 MLGRMFSMGA------DLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLV  184 (438)
T ss_pred             hhhhhhcccc------cccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEe
Confidence            7899999985      457789999997754  3456999999999999999999988888888888644

>PHA02790 Kelch-like protein; Provisional

Probab=85.61  E-value=0.87  Score=40.72  Aligned_cols=68  Identities=13%  Similarity=0.199  Sum_probs=53.1

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEE--cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI--DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi--drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      +++||+++.      ..++   +....+  +=++..++.||+|+=.|++.+.. ...+.+|..|.+.+++.+.+.+.+.+
T Consensus        47 FraMF~~~~------~Es~---~~v~~~~~~v~~~~l~~lldy~YTg~l~it~-~nV~~ll~aA~~Lqi~~v~~~C~~fL  116 (480)
T PHA02790         47 FRTHLRQKY------TKNK---DPVTRVCLDLDIHSLTSIVIYSYTGKVYIDS-HNVVNLLRASILTSVEFIIYTCINFI  116 (480)
T ss_pred             HHHHhcCCc------cccc---cceEEEecCcCHHHHHHHHHhheeeeEEEec-ccHHHHHHHHHHhChHHHHHHHHHHH
Confidence            578999986      1221   223443  67888899999999999999976 45889999999999988888877777

>PHA03098 kelch-like protein; Provisional

Probab=83.75  E-value=0.7  Score=41.72  Aligned_cols=65  Identities=20%  Similarity=0.337  Sum_probs=51.9

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      +++||+++..           ++...+-+ ++..|+.+|+|+-.|++.+.... ...++.-|++++++.+...+.+.+
T Consensus        37 F~~mf~~~~~-----------~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~-~~~ll~~A~~l~~~~l~~~C~~~l  101 (534)
T PHA03098         37 FKKMFKNNFK-----------ENEINLNI-DYDSFNEVIKYIYTGKINITSNN-VKDILSIANYLIIDFLINLCINYI  101 (534)
T ss_pred             HHHHHhCCCC-----------CceEEecC-CHHHHHHHHHHhcCCceEEcHHH-HHHHHHHHHHhCcHHHHHHHHHHH
Confidence            5679988861           23344555 89999999999999999886644 888999999999999887777666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
3drx_A	202	X-Ray Crystal Structure Of Human Kctd5 Protein Crys		1e-16
3drz_A	107	X-Ray Crystal Structure Of The N-Terminal Btb Domai		2e-15
2j8k_A	201	Structure Of The Fusion Of Np275 And Np276, Pentape		4e-10
2bm4_A	186	The Structure Of Mfpa (Rv3361c, C2 Crystal Form). T		3e-06
2j8i_A	118	Structure Of Np275, A Pentapeptide Repeat Protein F		3e-06
3du1_X	257	The 2.0 Angstrom Resolution Crystal Structure Of He		7e-06
2o6w_A	150	Crystal Structure Of A Pentapeptide Repeat Protein		1e-05
3naw_A	613	Crystal Structure Of E. Coli O157:h7 Effector Prote		2e-05
3sqv_A	616	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		2e-05
3psz_A	216	Crystal Structure Of Ahqnr, The Qnr Protein From Ae		5e-05
3pss_A	216	Crystal Structure Of Ahqnr, The Qnr Protein From Ae		1e-04
3n90_A	152	The 1.7 Angstrom Resolution Crystal Structure Of At		1e-04

>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein Crystallized In High- Salt Buffer Length = 202

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 51/74 (68%)
Query: 20  DVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79
           D D TGAYLIDR PTYF P+LNYLR+G+LV++ ++  EGVLEEA F+ I SL+  + + I
Sbjct: 51  DKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKI 110
Query: 80  MSRERSRDMMPLSR 93
             R+     +P+  
Sbjct: 111 RERDSKTSQVPVKH 124

>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of Human Kctd5 Protein Length = 107

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 47/63 (74%)
Query: 20  DVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79
           D D TGAYLIDR PTYF P+LNYLR+G+LV++ ++  EGVLEEA F+ I SL+  + + I
Sbjct: 45  DKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKI 104
Query: 80  MSR 82
             R
Sbjct: 105 RER 107

>pdb|2J8K|A Chain A, Structure Of The Fusion Of Np275 And Np276, Pentapeptide Repeat Proteins From Nostoc Punctiforme Length = 201

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 111 FQGVNLAGSDLSRLDLRN--INFKVRKGLTLPAC---SVNLKGANLEGSNMAGVNLRVAT 165
             G +L G++LS+ DL +  ++  + +G  L        NLK ANLE + ++  N+R A 
Sbjct: 82  LNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREAD 141
Query: 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L  ANL+  DL  A LA ADL   +L  + L  ANL GANL+DA LE
Sbjct: 142 LSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLE 188

>pdb|2BM4|A Chain A, The Structure Of Mfpa (Rv3361c, C2 Crystal Form). The Pentapeptide Repeat Protein From Mycobacterium Tuberculosis Folds As A Right-Handed Quadrilateral Beta- Helix. Length = 186

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKVRKGL---TLPACS------------------VN 145
           +E  F GVNLA S       RN  F+ R  L   T   CS                  V+
Sbjct: 33  SECDFSGVNLAESQHRGSAFRNCTFE-RTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVD 91
Query: 146 LKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGAN 205
              A L G+++ G+NL    L+  +L + DLR  VL GADL     +G+ L +A+LRGA 
Sbjct: 92  FTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGAT 151
Query: 206 L 206
           +
Sbjct: 152 V 152

>pdb|2J8I|A Chain A, Structure Of Np275, A Pentapeptide Repeat Protein From Nostoc Punctiforme Length = 118

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 144 VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRG 203
           V+L+GA LE  N++G  L  A L  ANLQ  +L  A L+GA L   DL G++L +A+L  
Sbjct: 40  VDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSD 99
Query: 204 ANLKDAALE 212
           A L +A LE
Sbjct: 100 AILDNAILE 108

>pdb|3DU1|X Chain X, The 2.0 Angstrom Resolution Crystal Structure Of Hetl, A Pentapeptide Repeat Protein Involved In Heterocyst Differentiation Regulation From The Cyanobacterium Nostoc Sp. Strain Pcc 7120 Length = 257

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 18/228 (7%)
Query: 4   KMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEA 63
           + +A G      +N  +++ T A L     +Y +  L   R G+         E  L EA
Sbjct: 28  RHYAAGKRNFQHINLQEIELTNASLTGADLSYAD--LRQTRLGKSNFSHTCLREADLSEA 85
Query: 64  RFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSR 123
             +GI+     L   I+ RE       L +  +  A ++            NL+   L +
Sbjct: 86  ILWGIDLSEADLYRAIL-READLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQ 144
Query: 124 LDLR-NINFKVRKGLTLPACS----VNLKGANLEGSNMAGVNLRVA----TLKNANLQNC 174
            DLR + N +   G  L   +     +L+ A+L  +N+ G  L  A    T++  NL   
Sbjct: 145 ADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLA-A 203
Query: 175 DLRAAVLAGADLENCDLSGSDLHEANLRGAN-----LKDAALELMLTP 217
           DL  A L GADL   +L  + L +ANL+GA+     LKDA L+  + P
Sbjct: 204 DLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMP 251

>pdb|2O6W|A Chain A, Crystal Structure Of A Pentapeptide Repeat Protein (Rfr23) From The Cyanobacterium Cyanothece 51142 Length = 150

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 131 FKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCD 190
           F   K   +     NL  ANL  S+++ + L  A L   NL   DL  A+L GA+L+  +
Sbjct: 48  FGXDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGAN 107
Query: 191 LSGSDLHEANLRGANLKDAALELMLTPLHMSQT 223
           L  ++L  ANL  ANL+ A    +LT +++ +T
Sbjct: 108 LENANLQGANLENANLRGA----ILTGVNLEET 136

>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel Length = 613

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 144 VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRG 203
           +N  G +L G ++ G+NL       A L + DLR + L+ A LENC    S L+E N   
Sbjct: 32  LNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCY 91
Query: 204 ANLKDAALELMLTPLHMSQT 223
           ANL +  +  +    + S +
Sbjct: 92  ANLSNCIIRALFENSNFSNS 111

>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 616

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 144 VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRG 203
           +N  G +L G ++ G+NL       A L + DLR + L+ A LENC    S L+E N   
Sbjct: 35  LNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCY 94
Query: 204 ANLKDAALELMLTPLHMSQT 223
           ANL +  +  +    + S +
Sbjct: 95  ANLSNCIIRALFENSNFSNS 114

>pdb|3PSZ|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas Hydrophila (P21212 Crystal Form) Length = 216

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 99  ALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAG 158
           A     IT +  F   +L G++ S       NF+   G  L  C   L G   +G+N+ G
Sbjct: 101 ASFANQITVKSYFXEAHLTGNNFSY-----ANFE---GCLLEQCE--LSGNRWQGANLFG 150
Query: 159 VNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPL 218
            +L  + L  +     D  +  L G DL  CDL G DL   NL G  + +   + +L  +
Sbjct: 151 ASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQI 210
Query: 219 HM 220
            +
Sbjct: 211 GL 212

>pdb|3PSS|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas Hydrophila (P21 Crystal Form) Length = 216

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 128 NINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLE 187
           N ++   +G  L  C   L G   +G+N+ G +L  + L  +     D  +  L G DL 
Sbjct: 122 NFSYANFEGCLLEQCE--LSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLR 179
Query: 188 NCDLSGSDLHEANLRGANLKDAALELMLTPLHM 220
            CDL G DL   NL G  + +   + +L  + +
Sbjct: 180 QCDLPGLDLRRVNLDGVQINEDQQQALLEQIGL 212

>pdb|3N90|A Chain A, The 1.7 Angstrom Resolution Crystal Structure Of At2g44920, A Pentapeptide Repeat Protein From Arabidopsis Thaliana Thylakoid Lumen Length = 152

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 147 KGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANL 206
           +G +L G + +G  L     K + L+  + + A L GA   + DL+G+DL EA+LRGA+ 
Sbjct: 14  RGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADF 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	3e-28
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-26
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	5e-25
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	8e-25
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	7e-23
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	6e-22
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	4e-21
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-15
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	4e-26
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	2e-24
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	4e-23
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	1e-22
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	3e-22
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	3e-21
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	1e-10
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	5e-26
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	7e-25
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	2e-23
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	9e-23
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	1e-22
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	1e-22
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	1e-21
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	9e-16
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	2e-04
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	5e-25
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	7e-24
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-23
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	6e-22
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	7e-22
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	9e-22
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	2e-21
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	6e-21
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	7e-21
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-19
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	5e-19
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-18
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-17
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	2e-15
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-07
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	7e-25
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	2e-18
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	8e-12
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	3e-11
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	8e-04
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	1e-24
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	1e-23
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	2e-23
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	5e-21
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	3e-19
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	4e-24
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	2e-23
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	3e-21
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	3e-20
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	5e-20
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	1e-19
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	1e-14
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	2e-14
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	1e-23
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	6e-23
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	1e-19
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	2e-16
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	2e-15
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	3e-10
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	2e-05
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	2e-23
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	2e-23
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	8e-23
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	1e-21
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	2e-14
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	2e-23
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	9e-23
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	1e-22
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	7e-22
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	2e-21
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	8e-16
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	9e-15
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	6e-04
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	9e-22
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	3e-21
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-17
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	6e-16
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	1e-14
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	3e-14
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	8e-14
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-13
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	1e-12
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-12
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-04
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	3e-04
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	3e-21
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	1e-16
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	2e-14
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	5e-14
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	3e-13
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	3e-17
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	6e-17
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	1e-16
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	1e-15
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	7e-04

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Length = 202

 Score =  105 bits (262), Expect = 3e-28
 Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
            L ++     +        D D TGAYLIDR PTYF P+LNYLR+G+LV++ ++  EGVL
Sbjct: 37  FLYRLCQADPD-----LDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 91

Query: 61  EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
           EEA F+ I SL+  + + I  RER      +  + V   ++        +       G  
Sbjct: 92  EEAEFYNITSLIKLVKDKI--RERDSKTSQVPVKHVYR-VLQCQEEELTQMVSTMSDGWK 148

Query: 121 LSRLDLRNINFKV 133
             +L     ++  
Sbjct: 149 FEQLVSIGSSYNY 161

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 99.8 bits (250), Expect = 2e-26
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
            F   ++ GS      LR +              V+   A L G+++ G+NL    L+  
Sbjct: 66  TFAQCSMLGSVFVACRLRPLTLD----------DVDFTLAVLGGNDLRGLNLTGCRLRET 115

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           +L + DLR  VL GADL     +G+ L +A+LRGA +      
Sbjct: 116 SLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWR 158

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 96.0 bits (240), Expect = 5e-25
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 5/103 (4%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
           ++      G D    DL  ++ +            +  G NL  S   G   R  T +  
Sbjct: 6   QWVDCEFTGRDFRDEDLSRLHTE---RAMF--SECDFSGVNLAESQHRGSAFRNCTFERT 60

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
            L +       + G+    C L    L + +   A L    L 
Sbjct: 61  TLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLR 103

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 95.6 bits (239), Expect = 8e-25
 Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           F GVNLA S       RN  F+             L  +     +M G       L+   
Sbjct: 37  FSGVNLAESQHRGSAFRNCTFE----------RTTLWHSTFAQCSMLGSVFVACRLRPLT 86

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L + D   AVL G DL   +L+G  L E +L   +L+   L 
Sbjct: 87  LDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLR 128

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 90.6 bits (226), Expect = 7e-23
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 10/100 (10%)

Query: 112 QGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANL 171
                   + +  D R+ +             ++ + A     + +GVNL  +  + +  
Sbjct: 3   HMQQWVDCEFTGRDFRDEDLS----------RLHTERAMFSECDFSGVNLAESQHRGSAF 52

Query: 172 QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
           +NC      L  +    C + GS      LR   L D   
Sbjct: 53  RNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDF 92

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 87.9 bits (219), Expect = 6e-22
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
           R + + L   D +   L   + +           +NL G  L  +++   +LR   L+ A
Sbjct: 81  RLRPLTLDDVDFTLAVLGGNDLR----------GLNLTGCRLRETSLVDTDLRKCVLRGA 130

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
           +L       A L  ADL    +       A+L GA +     
Sbjct: 131 DLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQA 172

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 86.0 bits (214), Expect = 4e-21
 Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 16/105 (15%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           F    L G+DL  L+L     +            +L   +L    + G +L  A    A 
Sbjct: 92  FTLAVLGGNDLRGLNLTGCRLR----------ETSLVDTDLRKCVLRGADLSGARTTGAR 141

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDL------HEANLRGANLKDA 209
           L + DLR A +         L G+ +        A   G  L   
Sbjct: 142 LDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG 186

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 70.6 bits (174), Expect = 2e-15
 Identities = 8/65 (12%), Positives = 14/65 (21%)

Query: 148 GANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLK 207
                     G + R   L   + +         +G +L      GS           L 
Sbjct: 4   MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLW 63

Query: 208 DAALE 212
            +   
Sbjct: 64  HSTFA 68

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 99.8 bits (250), Expect = 4e-26
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 10/103 (9%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
           R QG +  G+    +      F          CS  +   NL  +N + V L    L   
Sbjct: 93  RAQGADFRGASFMNMITTRTWF----------CSAYITNTNLSYANFSKVVLEKCELWEN 142

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
                 +  A  +G+DL   + S  D   AN    +L ++ L 
Sbjct: 143 RWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDLTNSELG 185

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 95.2 bits (238), Expect = 2e-24
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 10/108 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           F    +  ++LS  +   +  +             L      G+ + G     + L    
Sbjct: 114 FCSAYITNTNLSYANFSKVVLE----------KCELWENRWIGAQVLGATFSGSDLSGGE 163

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPL 218
               D  AA     DL N +L   D+   +L+G  L +    L++  L
Sbjct: 164 FSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERL 211

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 91.8 bits (229), Expect = 4e-23
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS---VNLKGANLEGSNMAGVNLRVATL 166
            F   + +G+DLS  +     F  R+      C+     LK A  +  +++  + R ++ 
Sbjct: 27  TFFNCDFSGADLSGTEFIGCQFYDRESQK--GCNFSRAMLKDAIFKSCDLSMADFRNSSA 84

Query: 167 KNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
               +++C  + A   GA   N   + +    A +   NL  A   
Sbjct: 85  LGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFS 130

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 90.2 bits (225), Expect = 1e-22
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 6/101 (5%)

Query: 113 GVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLR-VATLKNANL 171
            + L G  + R           +  T   C  +  GA+L G+   G       + K  N 
Sbjct: 5   ALALVGEKIDRNRFTGEKI---ENSTFFNC--DFSGADLSGTEFIGCQFYDRESQKGCNF 59

Query: 172 QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
               L+ A+    DL   D   S      +R    + A   
Sbjct: 60  SRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFR 100

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 89.4 bits (223), Expect = 3e-22
 Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 7/107 (6%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS----VNLKGANLEGSNMAGVNLRVAT 165
           + +       D S  DL    F    G            N   A L+ +     +L +A 
Sbjct: 22  KIENSTFFNCDFSGADLSGTEF---IGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMAD 78

Query: 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
            +N++    ++R     GAD                  A + +  L 
Sbjct: 79  FRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLS 125

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 87.1 bits (217), Expect = 3e-21
 Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           F    L  +     DL   +F+          + +  G  +      G + R A+  N  
Sbjct: 59  FSRAMLKDAIFKSCDLSMADFR----------NSSALGIEIRHCRAQGADFRGASFMNMI 108

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
                  +A +   +L   + S   L +  L       A + 
Sbjct: 109 TTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVL 150

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 158 GVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAA 210
           G ++ +A L    +         +  +   NCD SG+DL      G    D  
Sbjct: 1   GSHMALA-LVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRE 52

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 99.1 bits (248), Expect = 5e-26
 Identities = 38/102 (37%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
                L  + L    L                  NLK ANLE + ++  N+R A L  AN
Sbjct: 97  LSDAILDNAILEGAILDEAVLN----------QANLKAANLEQAILSHANIREADLSEAN 146

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L+  DL  A LA ADL   +L  + L  ANL GANL+DA LE
Sbjct: 147 LEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLE 188

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 96.0 bits (240), Expect = 7e-25
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           F  V+L G+ L  ++L                   L  ANL+ +N++  +L  ATL  A+
Sbjct: 37  FSIVDLRGAVLENINLSGAILH----------GAMLDEANLQQANLSRADLSGATLNGAD 86

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L+  +L  A L+ A L+N  L G+ L EA L  ANLK A LE
Sbjct: 87  LRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLE 128

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 92.5 bits (231), Expect = 2e-23
 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 4/102 (3%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
             G+   GS +    LR +     +  +     V+L+GA LE  N++G  L  A L  AN
Sbjct: 11  SSGLVPRGSHMDVEKLRQLYAAGERDFS----IVDLRGAVLENINLSGAILHGAMLDEAN 66

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           LQ  +L  A L+GA L   DL G++L +A+L  A L +A LE
Sbjct: 67  LQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILE 108

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 90.6 bits (226), Expect = 9e-23
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 1/102 (0%)

Query: 112 QGVNLAGSDLSRLDLRNINFKVRKGLTLPAC-SVNLKGANLEGSNMAGVNLRVATLKNAN 170
              +      S L  R  +  V K   L A    +    +L G+ +  +NL  A L  A 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAM 61

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L   +L+ A L+ ADL    L+G+DL  ANL  A+L DA L+
Sbjct: 62  LDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILD 103

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 90.2 bits (225), Expect = 1e-22
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
               +L+G+ L+  DLR  N              +L  A L+ + + G  L  A L  AN
Sbjct: 72  LSRADLSGATLNGADLRGANLS----------KADLSDAILDNAILEGAILDEAVLNQAN 121

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L+  +L  A+L+ A++   DLS ++L  A+L GA+L  A L 
Sbjct: 122 LKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLH 163

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 90.2 bits (225), Expect = 1e-22
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
             G  L  ++L + +L   +               L GA+L G+N++  +L  A L NA 
Sbjct: 57  LHGAMLDEANLQQANLSRADLS----------GATLNGADLRGANLSKADLSDAILDNAI 106

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L+   L  AVL  A+L+  +L  + L  AN+R A+L +A LE
Sbjct: 107 LEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLE 148

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 87.5 bits (218), Expect = 1e-21
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
            +G  L  + L++ +L+  N +      L     N++ A+L  +N+   +L  A L  A+
Sbjct: 107 LEGAILDEAVLNQANLKAANLE---QAIL--SHANIREADLSEANLEAADLSGADLAIAD 161

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDA 209
           L   +L  A L  A+L   +L  ++L    L G N   A
Sbjct: 162 LHQANLHQAALERANLTGANLEDANLEGTILEGGNNNLA 200

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 71.7 bits (177), Expect = 9e-16
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 146 LKGANLEGSNMAGVNLRVATLKNANLQN------CDLRAAVLAGADLENCDLSGSDLHEA 199
           +  ++    + +G+  R + +    L+        D     L GA LEN +LSG+ LH A
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGA 60

Query: 200 NLRGANLKDAALE 212
            L  ANL+ A L 
Sbjct: 61  MLDEANLQQANLS 73

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 10/55 (18%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT 165
               +L  ++L +  L   N              NL+ ANLEG+ + G N  +AT
Sbjct: 157 LAIADLHQANLHQAALERANLT----------GANLEDANLEGTILEGGNNNLAT 201

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 97.6 bits (244), Expect = 5e-25
 Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           FQ +NL   +L+   L   +              +L+   L  SN +   LR A L  A 
Sbjct: 37  FQHINLQEIELTNASLTGADLS----------YADLRQTRLGKSNFSHTCLREADLSEAI 86

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L   DL  A L  A L   DL+G+ L +  L  ANL  A+L 
Sbjct: 87  LWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLC 128

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 94.9 bits (237), Expect = 7e-24
 Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
            +  +L G+ L +  L   N              +L GANL  +N++   L  A L+ ++
Sbjct: 102 LREADLTGAKLVKTRLEEANLI----------KASLCGANLNSANLSRCLLFQADLRPSS 151

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
            Q  DL   +L GADL   DL  + LH ANL GA L  A   
Sbjct: 152 NQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFG 193

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 94.5 bits (236), Expect = 1e-23
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
            +       +   ++L+ I             + +L GA+L  +++    L  +   +  
Sbjct: 27  LRHYAAGKRNFQHINLQEIEL----------TNASLTGADLSYADLRQTRLGKSNFSHTC 76

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L+  DL  A+L G DL   DL  + L EA+L GA L    LE
Sbjct: 77  LREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLE 118

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 89.5 bits (223), Expect = 6e-22
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
            +   L  S+ S   LR  +        L    ++L  A+L  + +   +L  A L    
Sbjct: 62  LRQTRLGKSNFSHTCLREADLS---EAIL--WGIDLSEADLYRAILREADLTGAKLVKTR 116

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
           L+  +L  A L GA+L + +LS   L +A+LR ++ +   L
Sbjct: 117 LEEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDL 157

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 89.5 bits (223), Expect = 7e-22
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           F    L  +DLS   L  I+              +L  A L  +++ G  L    L+ AN
Sbjct: 72  FSHTCLREADLSEAILWGIDLS----------EADLYRAILREADLTGAKLVKTRLEEAN 121

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L    L  A L  A+L  C L  +DL  ++ +  +L    L 
Sbjct: 122 LIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLT 163

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 89.1 bits (222), Expect = 9e-22
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
               +L  + L + +  +   +            +L  A L G +++  +L  A L+ A+
Sbjct: 57  LSYADLRQTRLGKSNFSHTCLR----------EADLSEAILWGIDLSEADLYRAILREAD 106

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L    L    L  A+L    L G++L+ ANL    L  A L 
Sbjct: 107 LTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLR 148

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 88.3 bits (220), Expect = 2e-21
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 18/109 (16%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGV--------NLR 162
              V L G+DLS  DLR  +              NL GA L  +N            +L 
Sbjct: 157 LGYVLLTGADLSYADLRAASLH----------HANLDGAKLCRANFGRTIQWGNLAADLS 206

Query: 163 VATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
            A+L+ A+L   +L +A+L  A+L+  DL+G+ L +A L+GA + D ++
Sbjct: 207 GASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSI 255

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 86.8 bits (216), Expect = 6e-21
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
            +  +L+ + L  +DL   +               L+ A+L G+ +    L  A L  A+
Sbjct: 77  LREADLSEAILWGIDLSEADLY----------RAILREADLTGAKLVKTRLEEANLIKAS 126

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L   +L +A L+   L   DL  S     +L    L  A L 
Sbjct: 127 LCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLS 168

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 86.8 bits (216), Expect = 7e-21
 Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 112 QGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANL 171
              +      S L  R  +  V            L+       N   +NL+   L NA+L
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMNV---------GEILRHYAAGKRNFQHINLQEIELTNASL 52

Query: 172 QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
              DL  A L    L   + S + L EA+L  A L    L
Sbjct: 53  TGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDL 92

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 83.3 bits (207), Expect = 1e-19
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 13/105 (12%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKN-- 168
            Q  +L    L+  DL   + +          + +L  ANL+G+ +   N          
Sbjct: 152 NQRTDLGYVLLTGADLSYADLR----------AASLHHANLDGAKLCRANFGRTIQWGNL 201

Query: 169 -ANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
            A+L    L+ A L+ A+LE+  L  ++L  A+L GA LKDA L+
Sbjct: 202 AADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELK 246

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 81.8 bits (203), Expect = 5e-19
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 18/111 (16%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
                +L G++L+  +L                  +L+ ++ + +++  V L  A L  A
Sbjct: 121 NLIKASLCGANLNSANLSRCLL----------FQADLRPSSNQRTDLGYVLLTGADLSYA 170

Query: 170 NLQNCDLRAAVLAGADLENCDLSGS--------DLHEANLRGANLKDAALE 212
           +L+   L  A L GA L   +   +        DL  A+L+GA+L  A LE
Sbjct: 171 DLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSGASLQGADLSYANLE 221

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 80.6 bits (200), Expect = 1e-18
 Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 10/99 (10%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
                L  ++L +  L   N            S NL    L  +++   + +   L    
Sbjct: 112 LVKTRLEEANLIKASLCGANLN----------SANLSRCLLFQADLRPSSNQRTDLGYVL 161

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDA 209
           L   DL  A L  A L + +L G+ L  AN         
Sbjct: 162 LTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGN 200

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 77.9 bits (193), Expect = 1e-17
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 145 NLKGANLEGSNM-AGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRG 203
           +  G    GS+M  G  LR       N Q+ +L+   L  A L   DLS +DL +  L  
Sbjct: 10  HSSGLVPRGSHMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGK 69

Query: 204 ANLKDAALE 212
           +N     L 
Sbjct: 70  SNFSHTCLR 78

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 146 LKGANLEGSNMAGVNLR------VATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEA 199
           +  ++    + +G+  R         L++      + +   L   +L N  L+G+DL  A
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYA 60

Query: 200 NLRGANLKDAAL 211
           +LR   L  +  
Sbjct: 61  DLRQTRLGKSNF 72

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 166 LKNANLQNCDLRAAVLAGADLE-NCDLSGSDLHEANLRGANLKDAALE 212
           + +++  +      V  G+ +     L      + N +  NL++  L 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMNVGEILRHYAAGKRNFQHINLQEIELT 48

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score =  100 bits (251), Expect = 7e-25
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 4/107 (3%)

Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATL 166
            +   + +  A  D S  D RNI F      +     +   G  ++G N +      + +
Sbjct: 28  RQKAGETLTAADRDFSNADFRNITFSKILPPSF----MERDGDIIKGFNFSNSKFTYSDI 83

Query: 167 KNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALEL 213
            + +   C    + L+     N   S SD++E  L+ +         
Sbjct: 84  SHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSF 130

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 82.5 bits (203), Expect = 2e-18
 Identities = 15/122 (12%), Positives = 30/122 (24%), Gaps = 19/122 (15%)

Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS-----------VNLKGANLEGSN 155
             L     + + +D   +    I                          ++   + +   
Sbjct: 33  ETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECR 92

Query: 156 MAGVNLRVATLKNANLQNCDLRAAVLAGA-------DLENCDLSGSDL-HEANLRGANLK 207
                L      N    N D+    L  +          +  L  + + H+ANL G  L 
Sbjct: 93  FTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDTTLKNTLIRHKANLSGVILN 152

Query: 208 DA 209
           + 
Sbjct: 153 EP 154

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 62.8 bits (152), Expect = 8e-12
 Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 11/81 (13%)

Query: 143 SVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLR-----------AAVLAGADLENCDL 191
           +  L  A L       +        NA+ +N                 ++ G +  N   
Sbjct: 19  AKKLTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKF 78

Query: 192 SGSDLHEANLRGANLKDAALE 212
           + SD+   +        + L 
Sbjct: 79  TYSDISHLHFDECRFTYSTLS 99

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 61.7 bits (149), Expect = 3e-11
 Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 4/103 (3%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNM-AGVNLRVATLKNA 169
              V  + +  S  D+  +  +            +     L+ + +    NL    L   
Sbjct: 98  LSDVVCSNTKFSNSDMNEVFLQ---YSITTQQQPSFIDTTLKNTLIRHKANLSGVILNEP 154

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           +  +    +       L +  L    L   N     L      
Sbjct: 155 DNSSPPSVSGGGNFIRLGDIWLQMPLLWTENAVDGFLNHEHNN 197

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 7/57 (12%), Positives = 12/57 (21%)

Query: 154 SNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAA 210
            + A  +          L +  LR          + D S +D               
Sbjct: 5   HHHATSSPSSPADWAKKLTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFM 61

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 94.0 bits (235), Expect = 1e-24
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           F        DL+R +L N N        L   S+ L+ A L  +N++  +L  A L  AN
Sbjct: 48  FGMDKAKPVDLTRANLSNANLY---QSDL--SSIILENAILVETNLSETDLENAILIGAN 102

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           LQ  +L  A L GA+LEN +L G+ L   NL   +LK    +
Sbjct: 103 LQGANLENANLQGANLENANLRGAILTGVNLEETHLKGIETD 144

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 91.3 bits (228), Expect = 1e-23
 Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 115 NLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNC 174
              G +L  ++L   NF ++  +     S  L            V+L  A L NANL   
Sbjct: 14  ECVGCNLEGVNLPRENFGLKYRIPR--SSSPLVTTPFGMDKAKPVDLTRANLSNANLYQS 71

Query: 175 DLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           DL + +L  A L   +LS +DL  A L GANL+ A LE
Sbjct: 72  DLSSIILENAILVETNLSETDLENAILIGANLQGANLE 109

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 90.9 bits (227), Expect = 2e-23
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
             G NL G +L R +        R    L   +        +  ++   NL  A L  ++
Sbjct: 15  CVGCNLEGVNLPRENFGLKYRIPRSSSPL--VTTPFGMDKAKPVDLTRANLSNANLYQSD 72

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L +  L  A+L   +L   DL  + L  ANL+GANL++A L+
Sbjct: 73  LSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQ 114

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 84.4 bits (210), Expect = 5e-21
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
               NL+ ++L + DL +I  +      L     NL   +LE + + G NL+ A L+NAN
Sbjct: 58  LTRANLSNANLYQSDLSSIILE---NAIL--VETNLSETDLENAILIGANLQGANLENAN 112

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKD 208
           LQ  +L  A L GA L   +L  + L         + D
Sbjct: 113 LQGANLENANLRGAILTGVNLEETHLKGIETDKNTVWD 150

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 79.8 bits (198), Expect = 3e-19
 Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 118 GSDLSRLDLRNINFKVRKGLTLPACS-VNLKGANLEGSNMAG---VNLRVATLKNANLQN 173
            ++L RL+L               C   NL+G NL   N      +    + L       
Sbjct: 3   TNNLYRLELER------------ECVGCNLEGVNLPRENFGLKYRIPRSSSPLVTTPFGM 50

Query: 174 CDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
              +   L  A+L N +L  SDL    L  A L +  L 
Sbjct: 51  DKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLS 89

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 94.1 bits (235), Expect = 4e-24
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
           RF    + G + +     ++  +          +++ +   L  S   G+ L    +   
Sbjct: 75  RFVDCKMLGVNWTSAQWPSVKMEG---------ALSFERCILNDSLFYGLYLAGVKMVEC 125

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
            + + +   A    AD    DL GS  H   L GA+  DA   
Sbjct: 126 RIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNY 168

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 92.2 bits (230), Expect = 2e-23
 Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 10/100 (10%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           + G +    D S   L +I F+              +  N   + +     R     + N
Sbjct: 11  YCGESFVSEDRSGQSLESIRFE----------DCTFRQCNFTEAELNRCKFRECEFVDCN 60

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAA 210
           L    +           +C + G +   A      ++ A 
Sbjct: 61  LSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGAL 100

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 86.4 bits (215), Expect = 3e-21
 Identities = 12/100 (12%), Positives = 23/100 (23%), Gaps = 5/100 (5%)

Query: 113 GVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQ 172
              L   D       + +     G +L   S+  +       N     L     +     
Sbjct: 3   AKTLESKDYCGESFVSEDRS---GQSLE--SIRFEDCTFRQCNFTEAELNRCKFRECEFV 57

Query: 173 NCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           +C+L    +              +   N   A      +E
Sbjct: 58  DCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKME 97

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 83.7 bits (208), Expect = 3e-20
 Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 11/104 (10%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
            F+  N   ++L+R   R   F             NL   ++  ++   V      +   
Sbjct: 35  TFRQCNFTEAELNRCKFRECEFV----------DCNLSLISIPQTSFMEVRFVDCKMLGV 84

Query: 170 NLQNCDLRAAVLAGA-DLENCDLSGSDLHEANLRGANLKDAALE 212
           N  +    +  + GA   E C L+ S  +   L G  + +  + 
Sbjct: 85  NWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIH 128

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 82.9 bits (206), Expect = 5e-20
 Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 15/96 (15%)

Query: 116 LAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCD 175
           +    L   D    +F                  +  G ++  +     T +  N    +
Sbjct: 1   MPAKTLESKDYCGESFV---------------SEDRSGQSLESIRFEDCTFRQCNFTEAE 45

Query: 176 LRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
           L        +  +C+LS   + + +       D  +
Sbjct: 46  LNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKM 81

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 81.8 bits (203), Expect = 1e-19
 Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 10/105 (9%)

Query: 109 LRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKN 168
           L F+   L  S    L L  +                +  AN   ++    +   + LK 
Sbjct: 100 LSFERCILNDSLFYGLYLAGVKMV----------ECRIHDANFTEADCEDADFTQSDLKG 149

Query: 169 ANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALEL 213
           +   N  L  A    A   + D+  +D+  A             L
Sbjct: 150 STFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLPEAASLLNSL 194

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 69.1 bits (170), Expect = 1e-14
 Identities = 8/67 (11%), Positives = 19/67 (28%)

Query: 146 LKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGAN 205
           +    LE  +  G +         +L++           +    +L+     E      N
Sbjct: 1   MPAKTLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCN 60

Query: 206 LKDAALE 212
           L   ++ 
Sbjct: 61  LSLISIP 67

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 68.3 bits (168), Expect = 2e-14
 Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 20/96 (20%)

Query: 108 ELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLK 167
            L   GV +    +                       N   A+ E ++    +L+ +T  
Sbjct: 114 GLYLAGVKMVECRIHD--------------------ANFTEADCEDADFTQSDLKGSTFH 153

Query: 168 NANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRG 203
           N  L       AV    D+ + D+  +         
Sbjct: 154 NTKLTGASFIDAVNYHIDIFHNDIKRARFSLPEAAS 189

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 97.7 bits (243), Expect = 1e-23
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 115 NLAGSDLSRLDLRNINFKVRKGLTLPAC--SVNLKGANLEGSNMAGVNLRVATLKNANLQ 172
           +   + LS+ +L      +    T       +N  G +L G ++ G+NL       A L 
Sbjct: 1   SQGRACLSKAELTADLIWLSANRTGEESAEELNYSGCDLSGLSLVGLNLSSVNFSGAVLD 60

Query: 173 NCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           + DLR + L+ A LENC    S L+E N   ANL +  + 
Sbjct: 61  DTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIR 100

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 95.4 bits (237), Expect = 6e-23
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 14/111 (12%)

Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATL 166
            EL + G +L+G  L  L+L ++NF              L   +L  S+++   L   + 
Sbjct: 30  EELNYSGCDLSGLSLVGLNLSSVNFS----------GAVLDDTDLRMSDLSQAVLENCSF 79

Query: 167 KNANLQNCDLRAAVLAGAD----LENCDLSGSDLHEANLRGANLKDAALEL 213
           KN+ L  C+   A L+        EN + S S+L  A+ +G++       L
Sbjct: 80  KNSILNECNFCYANLSNCIIRALFENSNFSNSNLKNASFKGSSYIQYPPIL 130

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 86.1 bits (213), Expect = 1e-19
 Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 14/110 (12%)

Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATL 166
             +              L+    +             ++L G NL   N +G  L    L
Sbjct: 15  DLIWLSANRTGEESAEELNYSGCDLS----------GLSLVGLNLSSVNFSGAVLDDTDL 64

Query: 167 KNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLR----GANLKDAALE 212
           + ++L    L       + L  C+   ++L    +R     +N  ++ L+
Sbjct: 65  RMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLK 114

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 76.9 bits (189), Expect = 2e-16
 Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 20/113 (17%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVA--TLKN 168
           F+   L   +    +L N     R        + N   +NL+ ++  G +       L  
Sbjct: 79  FKNSILNECNFCYANLSNCII--RALFE----NSNFSNSNLKNASFKGSSYIQYPPILNE 132

Query: 169 ANLQNCDL------------RAAVLAGADLENCDLSGSDLHEANLRGANLKDA 209
           A+L    +                L        +L G  +  ++++   L   
Sbjct: 133 ADLTGAIIIPGMVLSGAILGDVKELFSEKSNTINLGGCYIDLSDIQENILSVL 185

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 73.8 bits (181), Expect = 2e-15
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 15/103 (14%)

Query: 107 AELR--FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNM-AGVNLRV 163
             +R  F+  N + S+L     +  +               L  A+L G+ +  G+ L  
Sbjct: 97  CIIRALFENSNFSNSNLKNASFKGSS--------YIQYPPILNEADLTGAIIIPGMVLSG 148

Query: 164 ATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANL 206
           A L +      +L +      +L  C +  SD+ E  L   + 
Sbjct: 149 AILGDVK----ELFSEKSNTINLGGCYIDLSDIQENILSVLDN 187

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 12/104 (11%)

Query: 111 FQGVNLAGSDLSR-LDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
             G+ L+G+ L    +L +              ++NL G  ++ S++    L V      
Sbjct: 141 IPGMVLSGAILGDVKELFSEKSN----------TINLGGCYIDLSDIQENILSVLDN-YT 189

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALEL 213
                 L     +     +  +  ++     +    L      +
Sbjct: 190 KSNKSILLTMNTSDDKYNHDKVRAAEELIKKISLDELAAFRPYV 233

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 17/111 (15%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
           +   +NL G  +   D++               SV         S +  +N       + 
Sbjct: 161 KSNTINLGGCYIDLSDIQENIL-----------SVLDNYTKSNKSILLTMNTSDDKYNHD 209

Query: 170 NLQNCDLRAAVLAGADLENC------DLSGSDLHEANLRGANLKDAALELM 214
            ++  +     ++  +L          L+ S      L  AN++     + 
Sbjct: 210 KVRAAEELIKKISLDELAAFRPYVKMSLADSFSIHPYLNNANIQQWLEPIC 260

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 92.2 bits (230), Expect = 2e-23
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 3/107 (2%)

Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS-VNLKGANLEGSNMAGVNLRVAT 165
              R  G+    +   R  + + +          A + V    A+ E   + G +    +
Sbjct: 11  LVPRGSGMKETAAKFERQHMDSPDL--GTDDDDKAMAMVTGSSASYEDVKLIGEDFSGKS 68

Query: 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L  A   N DL  +  + ADL     +GS L  A+L GA+L +    
Sbjct: 69  LTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAY 115

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 91.8 bits (229), Expect = 2e-23
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           ++ V L G D S   L    F           + +L  +N   +++ G     + L  A+
Sbjct: 54  YEDVKLIGEDFSGKSLTYAQFT----------NADLTDSNFSEADLRGAVFNGSALIGAD 103

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L   DL   +      +  DL+ + L EA +      DA + 
Sbjct: 104 LHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKIT 145

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 90.3 bits (225), Expect = 8e-23
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           F G +L  +  +  DL + NF             +L+GA   GS + G +L  A L N  
Sbjct: 64  FSGKSLTYAQFTNADLTDSNFS----------EADLRGAVFNGSALIGADLHGADLTNGL 113

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
                 + A L  A L    +  +   +A + GA+   A L+
Sbjct: 114 AYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLD 155

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 86.8 bits (216), Expect = 1e-21
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           F   +L  S+ S  DLR   F              L GA+L G+++      + + K A+
Sbjct: 74  FTNADLTDSNFSEADLRGAVFN----------GSALIGADLHGADLTNGLAYLTSFKGAD 123

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALEL 213
           L N  L  A++     ++  ++G+D   A L    +       
Sbjct: 124 LTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRA 166

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 67.9 bits (167), Expect = 2e-14
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 6/73 (8%)

Query: 145 NLKGANLEGS--NMAGVNLRVATLKNANL----QNCDLRAAVLAGADLENCDLSGSDLHE 198
           +  G    GS             + + +L     +  +     + A  E+  L G D   
Sbjct: 7   HSSGLVPRGSGMKETAAKFERQHMDSPDLGTDDDDKAMAMVTGSSASYEDVKLIGEDFSG 66

Query: 199 ANLRGANLKDAAL 211
            +L  A   +A L
Sbjct: 67  KSLTYAQFTNADL 79

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Length = 107

 Score = 89.7 bits (223), Expect = 2e-23
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
            L ++     +        D D TGAYLIDR PTYF P+LNYLR+G+LV++ ++  EGVL
Sbjct: 31  FLYRLCQADPD-----LDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 85

Query: 61  EEARFFGIESLVPQLMEIIMSR 82
           EEA F+ I SL+  + + I  R
Sbjct: 86  EEAEFYNITSLIKLVKDKIRER 107

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 89.1 bits (222), Expect = 9e-23
 Identities = 27/98 (27%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 115 NLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNC 174
              G    +   R  +              +  G  L   +     LR A  K A L   
Sbjct: 2   FKGGGPYGQGVTRGQDL----------SGKDFSGQTLIRQDFKTSILRQANFKGAKLLGA 51

Query: 175 DLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
               A L GADL   DL G+D   AN+   NL +A LE
Sbjct: 52  SFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLE 89

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 88.7 bits (221), Expect = 1e-22
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 113 GVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQ 172
           G           DL   +F              L   + + S +   N + A L  A+  
Sbjct: 5   GGPYGQGVTRGQDLSGKDF----------SGQTLIRQDFKTSILRQANFKGAKLLGASFF 54

Query: 173 NCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
           + DL  A L+ ADL   D S +++ + NL  ANL+ A +
Sbjct: 55  DADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATM 93

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 86.8 bits (216), Expect = 7e-22
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           +      G DLS  D                   + K + L  +N  G  L  A+  +A+
Sbjct: 8   YGQGVTRGQDLSGKDFSGQTLI----------RQDFKTSILRQANFKGAKLLGASFFDAD 57

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAA 210
           L   DL  A L GAD    +++  +L  ANL GA +    
Sbjct: 58  LTGADLSEADLRGADFSLANVTKVNLTNANLEGATMMGNT 97

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 86.0 bits (214), Expect = 2e-21
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           F G  L   D     LR  NFK   G  L     +   A+L G++++  +LR A    AN
Sbjct: 23  FSGQTLIRQDFKTSILRQANFK---GAKL--LGASFFDADLTGADLSEADLRGADFSLAN 77

Query: 171 LQNCDLRAAVLAGADL-ENCDLSGSDLHEANLRGANLKDAALELMLTPL 218
           +   +L  A L GA +  N    GS++  A+     L+D     +    
Sbjct: 78  VTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVA 126

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 71.0 bits (175), Expect = 8e-16
 Identities = 13/64 (20%), Positives = 19/64 (29%)

Query: 149 ANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKD 208
           A   G        R   L   +     L       + L   +  G+ L  A+   A+L  
Sbjct: 1   AFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTG 60

Query: 209 AALE 212
           A L 
Sbjct: 61  ADLS 64

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 67.9 bits (167), Expect = 9e-15
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 13/99 (13%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT-LKNA 169
           F   +L G+DLS  DLR  +F             N+   NL  +N+ G  +   T  K +
Sbjct: 53  FFDADLTGADLSEADLRGADF----------SLANVTKVNLTNANLEGATMMGNTSFKGS 102

Query: 170 NLQNCDLRAAVLAGADLENC--DLSGSDLHEANLRGANL 206
           N+   D     L             G +    N     L
Sbjct: 103 NITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTL 141

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 37.8 bits (89), Expect = 6e-04
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
            F+G N+ G+D + + LR+                   G N    N     L    L++ 
Sbjct: 98  SFKGSNITGADFTDVPLRDDQRV--------YLCKVADGVNATTGNATRDTLL-CNLEHH 148

Query: 170 NLQN 173
           +  +
Sbjct: 149 HHHH 152

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 88.3 bits (219), Expect = 9e-22
 Identities = 22/106 (20%), Positives = 29/106 (27%), Gaps = 11/106 (10%)

Query: 108 ELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATL- 166
           +  F+GV     DL     +   F             N    +L        +       
Sbjct: 4   DXCFEGVRFEQQDLEGEQFQGCRFI----------GCNFSWLDLAECRFVDCSFYDRESE 53

Query: 167 KNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           ++  LQ CDLR A     DL   D S S      LR          
Sbjct: 54  QSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFS 99

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 87.1 bits (216), Expect = 3e-21
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 1/107 (0%)

Query: 107 AELRFQGVNLAGSDLSRLDLRNINF-KVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT 165
              +FQG    G + S LDL    F            S  L+G +L  ++    +L +A 
Sbjct: 18  EGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMAD 77

Query: 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
              +     +LR     G +      +      +    A+L      
Sbjct: 78  CSRSQCLGLELRDCQALGINFSRASFANQITVXSYFCEAHLTGNNFS 124

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 76.4 bits (188), Expect = 2e-17
 Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 21/103 (20%)

Query: 116 LAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCD 175
           +       +                    +L+G   +G    G N     L      +C 
Sbjct: 2   IXDXCFEGVRFEQ---------------QDLEGEQFQGCRFIGCNFSWLDLAECRFVDCS 46

Query: 176 L------RAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
                  ++ +L G DL        DL  A+   +      L 
Sbjct: 47  FYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELR 89

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 72.9 bits (179), Expect = 6e-16
 Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 10/103 (9%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
             QG +L  +   R DL   +                 G  L      G+N   A+  N 
Sbjct: 57  LLQGCDLREASFLRCDLTMADCS----------RSQCLGLELRDCQALGINFSRASFANQ 106

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
                    A L G +    +  G  L +  L G   + A L 
Sbjct: 107 ITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLF 149

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 22/102 (21%), Positives = 34/102 (33%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
            +     G + SR    N                N   AN EG  +    L     + AN
Sbjct: 88  LRDCQALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGAN 147

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           L    L  + L+G++    D +  +L   +LR  +L    L 
Sbjct: 148 LFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLR 189

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 68.3 bits (167), Expect = 3e-14
 Identities = 23/103 (22%), Positives = 41/103 (39%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
           +  G+N + +  +        F             N +G  LE   ++G   + A L  A
Sbjct: 92  QALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGA 151

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           +L   DL  +     D  + +L G DL + +L G +L+   L+
Sbjct: 152 SLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLD 194

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 66.7 bits (163), Expect = 8e-14
 Identities = 27/109 (24%), Positives = 39/109 (35%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
            F       S      L   NF              L G   +G+N+ G +L  + L  +
Sbjct: 102 SFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGS 161

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPL 218
                D  +  L G DL  CDL G DL   NL G  + +   + +L  +
Sbjct: 162 EFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQI 210

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 22/101 (21%), Positives = 34/101 (33%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           F   + A            +               L+   L G+   G NL  A+L  ++
Sbjct: 98  FSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSD 157

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
           L   +      A  +L+ CDL   DL   +LR  NL    +
Sbjct: 158 LSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQI 198

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
            F   +L G++ S  +      +  +         NL GA+L GS+++G         + 
Sbjct: 112 YFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASV 171

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
           NLQ CDLR   L G DL   +L G  ++E   + A L+   L
Sbjct: 172 NLQGCDLRQCDLPGLDLRRVNLDGVQINED-QQQALLEQIGL 212

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 1/116 (0%)

Query: 91  LSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGAN 150
            SR    N + +     E    G N + ++     L        +         +L G++
Sbjct: 98  FSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSD 157

Query: 151 LEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANL 206
           L GS    ++     L+  +L+ CDL    L   +L+   ++  D  +A L    L
Sbjct: 158 LSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINE-DQQQALLEQIGL 212

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 91  LSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGAN 150
                +    +           G +LAGSDLS  +   I++             +L G +
Sbjct: 128 FEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLD 187

Query: 151 LEGSNMAGVNLRVATLKNANLQNCDLR 177
           L   N+ GV +     + A L+   L 
Sbjct: 188 LRRVNLDGVQIN-EDQQQALLEQIGLI 213

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 4/32 (12%), Positives = 7/32 (21%)

Query: 180 VLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
           ++     E       DL     +G        
Sbjct: 1   MIXDXCFEGVRFEQQDLEGEQFQGCRFIGCNF 32

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 87.2 bits (216), Expect = 3e-21
 Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 108 ELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLK 167
           E   +       DL   ++RN+ F+                 +L     A  +      +
Sbjct: 29  EAILENHLYQQIDLPNQEVRNLVFR----------DAVFDHLSLANGQFASFDCSNVRFE 78

Query: 168 NANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
             +  N +  +          C+L+G++  ++ L     +D   +
Sbjct: 79  ACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXAD 123

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 74.9 bits (184), Expect = 1e-16
 Identities = 20/134 (14%), Positives = 39/134 (29%), Gaps = 15/134 (11%)

Query: 87  DMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS--- 143
            +  L+   + +  IL        +Q ++L   ++  L  R+  F     L+L       
Sbjct: 17  QLPLLTNCQLEDEAILE----NHLYQQIDLPNQEVRNLVFRDAVFD---HLSLANGQFAS 69

Query: 144 -----VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHE 198
                V  +  +         +    T    NL   +   + L     E+C    +    
Sbjct: 70  FDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRF 129

Query: 199 ANLRGANLKDAALE 212
           AN    +     L 
Sbjct: 130 ANFNLVHFNQTRLV 143

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 68.8 bits (168), Expect = 2e-14
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 6/106 (5%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS---VNLKGANLEGSNMAGVNLRVATL 166
            F  ++LA    +  D  N+ F+               +         N+ G N   + L
Sbjct: 56  VFDHLSLANGQFASFDCSNVRFE---ACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYL 112

Query: 167 KNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
            +   ++C    A    A+      + + L E+           LE
Sbjct: 113 XDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLE 158

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 67.6 bits (165), Expect = 5e-14
 Identities = 16/102 (15%), Positives = 28/102 (27%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
            F   NL G++ +   L +  F+            N    +   + +        T    
Sbjct: 96  TFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXL 155

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
            L+ CDL  +      L   D S +           L    +
Sbjct: 156 LLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLXV 197

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 65.3 bits (159), Expect = 3e-13
 Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 10/103 (9%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
           RF+  + +  +        + F             NL G N   S +            A
Sbjct: 76  RFEACDFSNVEWLSGSFHRVTFL----------RCNLTGTNFADSYLXDCLFEDCXADYA 125

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           + +  +          L   +          L   +L ++   
Sbjct: 126 SFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWL 168

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Length = 140

 Score = 74.5 bits (183), Expect = 3e-17
 Identities = 17/67 (25%), Positives = 27/67 (40%)

Query: 22  DSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMS 81
           + T  Y  DR P  F  +LN+ R G+L            +E  F+GI   +         
Sbjct: 72  EDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEY 131

Query: 82  RERSRDM 88
           ++R R+ 
Sbjct: 132 KDRKREN 138

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Length = 105

 Score = 72.4 bits (178), Expect = 6e-17
 Identities = 19/67 (28%), Positives = 27/67 (40%)

Query: 22  DSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMS 81
             T  Y  DR P  F  ILN+ R G+L    +       EE  FFG+   +         
Sbjct: 37  PETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEY 96

Query: 82  RERSRDM 88
           ++R R+ 
Sbjct: 97  KDRRREN 103

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Length = 124

 Score = 72.5 bits (178), Expect = 1e-16
 Identities = 15/51 (29%), Positives = 22/51 (43%)

Query: 22  DSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72
           + T  Y  DR P  F  +LN+ R G+L            +E  F+GI   +
Sbjct: 50  EDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEI 100

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Length = 115

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 1   MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
            L+++                     Y  DR P  F  I+NY R+G+L    ++      
Sbjct: 30  RLSRLTEG--------MLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLFE 81

Query: 61  EEARFFGIESLVPQLMEIIMSRER 84
           EE  F+G++S   +    +     
Sbjct: 82  EELEFWGLDSNQVEPCCWMTYTAH 105

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Length = 100

 Score = 62.9 bits (153), Expect = 2e-13
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 22 DSTGAYLIDRSPTYFEPILNYLRN-GQLVLDPNINPEGVLEEARFFGIESLV 72
               Y  DR+   F+ IL + ++ G+L    N+  +   EE +F+ +    
Sbjct: 39 PLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGENA 90

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 5e-06
 Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 57/219 (26%)

Query: 12  GGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESL 71
             +++N  + +S             E +L  L+     +DPN              I S+
Sbjct: 183 KIFWLNLKNCNSP------------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 72  VPQLMEIIMSRERSRDMMPLSRRDV-----INA-------LILTPITAELRFQGVNLAGS 119
             +L  ++ S+     ++ L   +V      NA       L+ T      RF+ V    S
Sbjct: 231 QAELRRLLKSKPYENCLLVL--LNVQNAKAWNAFNLSCKILLTT------RFKQVTDFLS 282

Query: 120 DLSR----LDLRNINFKVRKGLTLPACSVNLKGANL-----EGS----NMAGVNLR--VA 164
             +     LD  ++     +  +L    ++ +  +L       +    ++   ++R  +A
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 165 TLKNANLQNCD-LRAAVLAGADLENCDLSGSDLHEANLR 202
           T  N    NCD L   +         + S + L  A  R
Sbjct: 343 TWDNWKHVNCDKLTTII---------ESSLNVLEPAEYR 372

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 22  DSTGAYLIDRSPTYFEPILNYLRNG-QLVLDPNINPEGVLEEARFFGIE 69
                Y  DR+   F+ IL Y ++G +L    N+  +   EE RF+ + 
Sbjct: 90  PLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELG 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	99.93
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	99.91
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	99.9
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	99.9
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	99.9
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	99.9
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	99.9
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	99.9
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	99.89
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	99.89
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	99.89
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	99.89
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	99.89
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	99.88
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	99.87
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	99.86
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	99.84
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	99.84
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	99.83
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	99.82
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	99.8
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	99.67
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	99.64
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	99.58
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	99.54
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	99.39
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	99.37
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	99.21
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	99.19
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	99.14
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	98.63
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	92.63
2vpk_A	116	Myoneurin; transcription regulation, transcription	91.5
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	89.96
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	88.29
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	87.98
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	87.81
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	86.97
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	86.01
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	85.96
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	84.26
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	81.88
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	80.6

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A

Probab=99.93  E-value=1.6e-26  Score=180.84  Aligned_cols=173  Identities=30%  Similarity=0.272  Sum_probs=97.0

Q ss_pred             CChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHHHhhcccCCCCCcchhhhhhhhhccCCCCCceeec
Q psy17757         34 TYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQG  113 (225)
Q Consensus        34 ~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~f~~  113 (225)
                      -.-+.++..+..|...+....+....+.+++|.++..           ..+.+.+++|++++|.+++|.++.|.+++|.+
T Consensus        21 m~~~~ll~~~~~g~~~~~~~dl~~~~l~~~~l~~~~l-----------~~a~l~~a~l~~a~ls~a~l~~a~l~~a~l~~   89 (201)
T 2j8k_A           21 MDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAIL-----------HGAMLDEANLQQANLSRADLSGATLNGADLRG   89 (201)
T ss_dssp             CCHHHHHHHHHTTCCBCTTCBCTTCBCTTCBCTTCBC-----------TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred             CCHHHHHHHHHcCccccccCcCCCCccCCCccCCCCc-----------CCCccCCCccCCCccCcCCCCCCCcCCcCcCC
Confidence            3345677777777766666555555555555544432           22234444444444444444444444444444


Q ss_pred             ccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccccCceeecccccccccccCcccCcccccC
Q psy17757        114 VNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSG  193 (225)
Q Consensus       114 ~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~  193 (225)
                      |+|.+++|.+++|.++.|.++.+.++.+.+++|.+++|.+++|.+++|.+|+|.+++|.+|+|++|+|.+++|.+++|.+
T Consensus        90 a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~L~~a~l~~a~l~~a~l~~  169 (201)
T 2j8k_A           90 ANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQ  169 (201)
T ss_dssp             CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred             CEECCCCccCCccCCCEeCccCcCCCCcccCcCccccccCCEEeCCEeeecCcCcCCCCCCCCCCCCcCCCEeCCCCcCC
Confidence            44444444444444444444444444555555555555555555666666666666666666666666666666666666


Q ss_pred             CCcCCccccCCccccccccccccc
Q psy17757        194 SDLHEANLRGANLKDAALELMLTP  217 (225)
Q Consensus       194 ~~l~~a~~~~~~l~~~~~~~~~~~  217 (225)
                      ++|.+++|++++|++++|++++.+
T Consensus       170 a~l~~a~l~~a~l~~a~l~ga~l~  193 (201)
T 2j8k_A          170 AALERANLTGANLEDANLEGTILE  193 (201)
T ss_dssp             CBCTTCBCTTCBCTTCBCTTSTTT
T ss_pred             CCCCCCCCCCCCcCCCEECcCCCC
Confidence            666666666666666666665543

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A

Probab=99.91  E-value=2.6e-24  Score=168.32  Aligned_cols=24  Identities=50%  Similarity=0.675  Sum_probs=8.9

Q ss_pred             ccccCCCcCCccccCCcccccccc
Q psy17757        189 CDLSGSDLHEANLRGANLKDAALE  212 (225)
Q Consensus       189 ~~f~~~~l~~a~~~~~~l~~~~~~  212 (225)
                      ++|.+++|.+++|.+++|++++|+
T Consensus       160 a~l~~a~l~~a~l~~a~l~~a~l~  183 (201)
T 2j8k_A          160 ADLHQANLHQAALERANLTGANLE  183 (201)
T ss_dssp             CBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred             CEeCCCCcCCCCCCCCCCCCCCcC
Confidence            333333333333333333333333

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}

Probab=99.90  E-value=2.1e-26  Score=182.04  Aligned_cols=128  Identities=15%  Similarity=0.139  Sum_probs=79.6

Q ss_pred             CCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccc
Q psy17757         86 RDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT  165 (225)
Q Consensus        86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~  165 (225)
                      +.++.|.+|+|.+++|.++.|.++.|.+|+|.+++|++++|.++.|.+|++.++.+.+++|.++.|.+|+|.+++|.+|+
T Consensus        72 l~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~  151 (214)
T 2w7z_A           72 CSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVT  151 (214)
T ss_dssp             EEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCE
T ss_pred             ecCCEEEeeECcCCCccCCEEEeeEEeCCeeeCCCcCCCEeeeeEEeCCCCCCCcCCcCccCceEEEecccCCCCccCCE
Confidence            34444555555555555555555555566666666666666666666666666666666666666666666666666666


Q ss_pred             cCceeecccccccccccCcccCcccccCCCcCCccccCCccccccccc
Q psy17757        166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALEL  213 (225)
Q Consensus       166 l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~~  213 (225)
                      |+++.|.+|+|.+++|.+++|++++|++|+|.+++|.+++++|++++.
T Consensus       152 L~~a~f~~~~L~~a~f~~a~l~~~~l~~a~l~~~~~~~a~l~ga~~~~  199 (214)
T 2w7z_A          152 WXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLXVTP  199 (214)
T ss_dssp             EEEEEEESCBCTTCBCTTCCCTTCBCTTSBCSCCBCCGGGCTTCEECH
T ss_pred             EEEEEEEecccccCEecCCeeccCCcccCCcCceEcCHHHcCCcccCH
Confidence            666666666666666666666666666666666666666666666663

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A

Probab=99.90  E-value=1.6e-24  Score=171.53  Aligned_cols=41  Identities=10%  Similarity=0.133  Sum_probs=17.9

Q ss_pred             hhhccCCCCCceeecccccCCcccccccccceeeecccccc
Q psy17757         99 ALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTL  139 (225)
Q Consensus        99 ~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~  139 (225)
                      ++|.++.|.++.|.+|+|++++|++++|.++.|.+|++.++
T Consensus        57 ~~f~~a~l~~a~f~~~~l~~a~f~~a~l~~a~f~~~~l~~a   97 (217)
T 2xty_A           57 CNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGA   97 (217)
T ss_dssp             CBCTTCBCTTCEEESCBCTTCBCTTCBCTTEEEESCBCTTC
T ss_pred             cccCCCccCCCCcCCCCCCCCccCCCccCCCcccCCCcCCC
Confidence            44444444444444444444444444444444444433333

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A

Probab=99.90  E-value=6e-25  Score=171.76  Aligned_cols=126  Identities=17%  Similarity=0.194  Sum_probs=55.3

Q ss_pred             CCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccce------ecCccccCCcccCc
Q psy17757         86 RDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVN------LKGANLEGSNMAGV  159 (225)
Q Consensus        86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~------~~~~~f~~~~l~~~  159 (225)
                      +.++.|++++|.+++|.++.|.++.|.+|+|++++|+++.|.++.|.+|++.++.+.+++      +.++.|.+|+|.++
T Consensus        31 ~~~~~f~~~~~~~~~l~~~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a~~~~~~~l~~~~f~~~~l~~a  110 (200)
T 2xt2_A           31 FEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDS  110 (200)
T ss_dssp             EESCEEESCBCTTCEEESCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGSCCCSSCCTTSEEEESCBCTTC
T ss_pred             EccCEEEeeeccCCeecCCEEEecEeeecccccCccccCeeeeeEEEcCEecCCccccCcccccccccceEEEcCccccc
Confidence            344444444444444444444444444555555444444444444544444444444444      33444444444444


Q ss_pred             cccccccCceeecccccccccccCcccCcccccCCCcCCccccCCccccccc
Q psy17757        160 NLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL  211 (225)
Q Consensus       160 ~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~  211 (225)
                      +|.+++|.++.|.+|+|.+++|.+++|++++|++|+|.+++|.+++|++++|
T Consensus       111 ~f~~a~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f  162 (200)
T 2xt2_A          111 LFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASF  162 (200)
T ss_dssp             BCTTCBCTTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBC
T ss_pred             EEccCccCCCEecCCEeecccCCCCccccCCccCcccCCCCccCCccccCCc
Confidence            4444444444444444444444444444333333333333333333333333

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}

Probab=99.90  E-value=5.1e-24  Score=159.23  Aligned_cols=130  Identities=19%  Similarity=0.186  Sum_probs=82.0

Q ss_pred             ccCCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccc
Q psy17757         84 RSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRV  163 (225)
Q Consensus        84 ~~~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~  163 (225)
                      ..+.+++|++++|.+++|.++.+  +.+.+|+|.+++|++++|.+++|.+|++.++.+.+++|.+++|.+++|.+++|.+
T Consensus        13 ~~~~~~~l~~~dL~~~~l~~~~~--~~~~~~~l~~~~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~   90 (150)
T 2o6w_A           13 RECVGCNLEGVNLPRENFGLKYR--IPRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSE   90 (150)
T ss_dssp             SBCTTCBCTTCBCTTCBCSSSCB--CC---CTTCCBSTTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred             CCcCCcccCCCCCCCCCcccCcc--cccccCccccCccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecC
Confidence            34556666666666666655532  2445555555555555555555555555555555777777777777777777777


Q ss_pred             cccCceeecccccccccccCcccCcccccCCCcCCccccCCccccccccccc
Q psy17757        164 ATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELML  215 (225)
Q Consensus       164 a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~~~~  215 (225)
                      ++|+++.|.+|+|++|+|.+|+|.+++|.+++|.+++|.+++|++++|+++.
T Consensus        91 a~l~~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a~l~~a~l~ga~  142 (150)
T 2o6w_A           91 TDLENAILIGANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKGIE  142 (150)
T ss_dssp             CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred             CCCCCCEecCCCCCCCCCCCceecccEECCCCcCcCCccCCCCCCCCcCCCE
Confidence            7777777777777777777777777777777777777777777776666553

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A

Probab=99.90  E-value=3e-25  Score=171.80  Aligned_cols=119  Identities=26%  Similarity=0.350  Sum_probs=47.1

Q ss_pred             CCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccccC
Q psy17757         88 MMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLK  167 (225)
Q Consensus        88 ~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~  167 (225)
                      +++|++++|.++.|.++.|.++.|.+|+|++++|.+++|.+++|.+|++.+..+.+++|.+++|.+++|.+++|.+|+|.
T Consensus        34 ~~~f~~~~l~~a~l~~~~~~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~  113 (186)
T 2bm5_A           34 ECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLR  113 (186)
T ss_dssp             SCBCTTCBCTTCEEESCEEESCEEESCBCTTCEEEEEECTTCEEESCBCCSCEEEEEECTTCBCTTCBCTTCBCTTCBCT
T ss_pred             CCCcCCCCCCCCEecCCCcCCcCcCCceeCCCCcCCCCcCCCcccCCeeccCEEeccCcCcCccCCCccCCCeeccCEEe
Confidence            33333333333333444444444444444444444444444444444333333333333333333333333333333333


Q ss_pred             ceeecccccccccccCcccCcccccCCCcCCccccCCcc
Q psy17757        168 NANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANL  206 (225)
Q Consensus       168 ~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l  206 (225)
                      +++|.+++|++++|.+++|++++|.+++|.+++|+++++
T Consensus       114 ~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l  152 (186)
T 2bm5_A          114 ETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATV  152 (186)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred             cCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEe
Confidence            333333333333333333333333333333333333333

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A

Probab=99.90  E-value=3.6e-24  Score=165.72  Aligned_cols=127  Identities=21%  Similarity=0.232  Sum_probs=72.0

Q ss_pred             CCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccc
Q psy17757         86 RDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT  165 (225)
Q Consensus        86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~  165 (225)
                      +.+++|.+++|.++.|.++.|.++.|.+|+|.+++|++++|.+++|.+|++..+.+.+++|++++|.+|+|.+++|.+|+
T Consensus        42 l~~a~l~~~~~~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~  121 (186)
T 2bm5_A           42 LAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTD  121 (186)
T ss_dssp             CTTCEEESCEEESCEEESCBCTTCEEEEEECTTCEEESCBCCSCEEEEEECTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred             CCCCEecCCCcCCcCcCCceeCCCCcCCCCcCCCcccCCeeccCEEeccCcCcCccCCCccCCCeeccCEEecCccCCCc
Confidence            44444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCceeecccccccccccCcccCcccccCCCcCCccccCCcccccccc
Q psy17757        166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE  212 (225)
Q Consensus       166 l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~  212 (225)
                      |++++|.+|+|.+++|.+++|++++|+++++.++++.+++|+++.++
T Consensus       122 L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~~~~~a~l~ga~~~  168 (186)
T 2bm5_A          122 LRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVD  168 (186)
T ss_dssp             CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHHHHSBCTTCBCC
T ss_pred             cCCCCcCCCccCCCEecCCccCCcccCCCEeeccccccCeecccCcC
Confidence            55555555555555555555555555555555555555555555555

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}

Probab=99.89  E-value=1.1e-24  Score=172.23  Aligned_cols=130  Identities=12%  Similarity=0.086  Sum_probs=106.5

Q ss_pred             cCCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCcccccc
Q psy17757         85 SRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVA  164 (225)
Q Consensus        85 ~~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a  164 (225)
                      .+.++.|.+++|.+++|.++.|.++.|.+|+|++++|++++|.++.|.+|++.++.+.+++|.++.|.+|+|.+++|.++
T Consensus        51 ~l~~~~f~~~~~~~~~~~~a~l~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a  130 (214)
T 2w7z_A           51 VFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFA  130 (214)
T ss_dssp             EEEEEEEEEEECTTCEEETCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTC
T ss_pred             EeccCEEEcCEEeCCccCCCEecCCEEEeeECcCCCccCCEEEeeEEeCCeeeCCCcCCCEeeeeEEeCCCCCCCcCCcC
Confidence            45677778888888888888888888888888889999999999999999888888888888888888888888888888


Q ss_pred             ccCceeecccccccccccCcccCcccccCCCcCCccccCCcccccccccc
Q psy17757        165 TLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELM  214 (225)
Q Consensus       165 ~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~~~  214 (225)
                      +|.++.|.+|+|.+++|.+++|++++|.+|+|.+++|.+++|++++|.++
T Consensus       131 ~l~~~~f~~~~l~~a~f~~a~L~~a~f~~~~L~~a~f~~a~l~~~~l~~a  180 (214)
T 2w7z_A          131 NFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQN  180 (214)
T ss_dssp             EEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCCCTTCBCTTS
T ss_pred             ccCceEEEecccCCCCccCCEEEEEEEEecccccCEecCCeeccCCcccC
Confidence            88888888888888888887777777777777777777777766666654

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}

Probab=99.89  E-value=7.4e-24  Score=171.79  Aligned_cols=37  Identities=19%  Similarity=0.084  Sum_probs=22.2

Q ss_pred             CChHHHHHHHHhCCcccCCCCChHhHHhhhhccCccc
Q psy17757         34 TYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIES   70 (225)
Q Consensus        34 ~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~   70 (225)
                      .--+.++..+..|+..+....+....+.++.|.+++.
T Consensus        21 m~~~e~l~~~~~~~~~f~~~~l~~~~l~~~~l~~~~~   57 (257)
T 3du1_X           21 MNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADL   57 (257)
T ss_dssp             CCHHHHHHHHHTTCCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred             CCHHHHHHHHHhcccccccCCcCCCccCCCCCCCCCC
Confidence            4456788888777777665555554444444444443

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}

Probab=99.89  E-value=5.3e-24  Score=172.62  Aligned_cols=30  Identities=50%  Similarity=0.622  Sum_probs=11.3

Q ss_pred             CcccCcccccCCCcCCccccCCcccccccc
Q psy17757        183 GADLENCDLSGSDLHEANLRGANLKDAALE  212 (225)
Q Consensus       183 ~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~  212 (225)
                      +++|++++|++++|.+++|.+++|++++|.
T Consensus       207 ~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~  236 (257)
T 3du1_X          207 GASLQGADLSYANLESAILRKANLQGADLT  236 (257)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred             CCccCCCcCCCCcCCCCcCCCCCCCCCCcc
Confidence            333333333333333333333333333333

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A

Probab=99.89  E-value=1.3e-24  Score=172.05  Aligned_cols=40  Identities=13%  Similarity=0.140  Sum_probs=15.3

Q ss_pred             cchhhhhhhhhccCCCCCceeecccccCCcccccccccce
Q psy17757         91 LSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNIN  130 (225)
Q Consensus        91 ~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~  130 (225)
                      |.+++|.+++|.++.+.++.|.+|+|.+++|++++|.++.
T Consensus        69 f~~~~l~~a~f~~a~l~~a~f~~~~l~~a~f~~a~l~~~~  108 (217)
T 2xty_A           69 FKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMI  108 (217)
T ss_dssp             EESCBCTTCBCTTCBCTTEEEESCBCTTCBCTTCBCC---
T ss_pred             cCCCCCCCCccCCCccCCCcccCCCcCCCCcCCCccccCc
Confidence            3333333333444444444444444444444444444433

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A

Probab=99.89  E-value=7.8e-25  Score=171.10  Aligned_cols=131  Identities=13%  Similarity=0.137  Sum_probs=105.7

Q ss_pred             ccCCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccc------cccceeeeccccccccccceecCccccCCccc
Q psy17757         84 RSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLD------LRNINFKVRKGLTLPACSVNLKGANLEGSNMA  157 (225)
Q Consensus        84 ~~~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~------l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~  157 (225)
                      ..+.++.|.+|+|.+++|.++.+.++.|.+|+|.+++|+++.      +.++.|.+|.+.++.+.+++|.+++|.+|+|.
T Consensus        49 ~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a~~~~~~~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~  128 (200)
T 2xt2_A           49 CKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIH  128 (200)
T ss_dssp             CEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGSCCCSSCCTTSEEEESCBCTTCBCTTCBCTTCEEESCBCT
T ss_pred             CEEEecEeeecccccCccccCeeeeeEEEcCEecCCccccCcccccccccceEEEcCcccccEEccCccCCCEecCCEee
Confidence            344555566666666666666666677777777777777777      77777888888888888888899999999999


Q ss_pred             CccccccccCceeecccccccccccCcccCcccccCCCcCCccccCCcccccccccc
Q psy17757        158 GVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELM  214 (225)
Q Consensus       158 ~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~~~  214 (225)
                      +++|.+|+|++++|.+|+|.+++|.+++|.+++|++++|.++++++++++++.|+..
T Consensus       129 ~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~~~~~~~~l~ga~~~~~  185 (200)
T 2xt2_A          129 DANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLP  185 (200)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBCTTCBSCCCCTTSSBCTTCEECTT
T ss_pred             cccCCCCccccCCccCcccCCCCccCCccccCCcCCCCccccccccccccCcEECHH
Confidence            999999999999999999999999988888888888888888888888888888854

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}

Probab=99.88  E-value=2e-23  Score=155.95  Aligned_cols=127  Identities=25%  Similarity=0.250  Sum_probs=61.8

Q ss_pred             hhcccCCCCCcchhhhhhhh---hccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCccc
Q psy17757         81 SRERSRDMMPLSRRDVINAL---ILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMA  157 (225)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~---l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~  157 (225)
                      ...+.+.+++|++++|.++.   +.++.+.++.|.+|+|.+++|++++|++++|.+|++.++.+.+++|.+++|.+++|.
T Consensus        15 ~~~~~l~~~dL~~~~l~~~~~~~~~~~~l~~~~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~   94 (150)
T 2o6w_A           15 CVGCNLEGVNLPRENFGLKYRIPRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLE   94 (150)
T ss_dssp             CTTCBCTTCBCTTCBCSSSCBCC---CTTCCBSTTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred             cCCcccCCCCCCCCCcccCcccccccCccccCccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCC
Confidence            34555666777777776662   333444444444444444444444444444444444333333444444444444444


Q ss_pred             CccccccccCceeecccccccccccCcccCcccccCCCcCCccccCCcccccccc
Q psy17757        158 GVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE  212 (225)
Q Consensus       158 ~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~  212 (225)
                      ++     .|.+|+|.+++|.+|+|.+++|.+|+|.+++|.+++|.+++|+++.++
T Consensus        95 ~a-----~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a~l~~a~l~ga~~~  144 (150)
T 2o6w_A           95 NA-----ILIGANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKGIETD  144 (150)
T ss_dssp             TC-----BCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCC
T ss_pred             CC-----EecCCCCCCCCCCCceecccEECCCCcCcCCccCCCCCCCCcCCCEec
Confidence            44     444444444444444444445555555555555555555555555554

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A

Probab=99.87  E-value=2e-23  Score=164.89  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=15.6

Q ss_pred             hhhhccCCCCCceeecccccCCcccccccccceeeec
Q psy17757         98 NALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVR  134 (225)
Q Consensus        98 ~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~  134 (225)
                      +++|.++.|.++.|.+|+|++++|++++|.++.|.+|
T Consensus        55 ~~~f~~a~l~~~~f~~~~l~~~~f~~a~l~~~~f~~~   91 (216)
T 3pss_A           55 SCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDC   91 (216)
T ss_dssp             CCBCTTCBCTTCEEESCBCTTCBCTTCBCTTEEEESC
T ss_pred             CcEeCCCCccCCCcCccCCCCCccCCCCcccCCcccC
Confidence            3344444444444444444444444444444444444

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A

Probab=99.86  E-value=2.7e-22  Score=154.65  Aligned_cols=108  Identities=24%  Similarity=0.320  Sum_probs=52.3

Q ss_pred             CCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccccCcee-----ecccccccc
Q psy17757        105 ITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN-----LQNCDLRAA  179 (225)
Q Consensus       105 ~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~~~-----f~~~~l~~a  179 (225)
                      .+.+++|.+|+|++++|++++|++++|.+|++.++.+.+++|.++.|.+|+|.+++|.+++|.++.     |.+|+|++|
T Consensus        48 ~~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a  127 (184)
T 2f3l_A           48 TGSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNA  127 (184)
T ss_dssp             ----CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTC
T ss_pred             cccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCC
Confidence            334455555555555555555555555555555544445555555554444444444444444444     444444444


Q ss_pred             cccCcccCcccccCCCcCCccccCCcccccccc
Q psy17757        180 VLAGADLENCDLSGSDLHEANLRGANLKDAALE  212 (225)
Q Consensus       180 ~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~  212 (225)
                      +|.+++|.+++|.+++|.+++|++++|++++++
T Consensus       128 ~l~~a~l~~a~f~~a~L~gadf~~a~l~~~~l~  160 (184)
T 2f3l_A          128 VLTEAIMMRTKFDDAKITGADFSLAVLDVYEVD  160 (184)
T ss_dssp             BCTTCEEEEEECTTCBCTTCBCTTCEECHHHHH
T ss_pred             EeeCCEECCCEEeCCEecCCEecCCCCCcChHH
Confidence            444444444444455555555555555555544

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A

Probab=99.84  E-value=4.8e-22  Score=153.27  Aligned_cols=115  Identities=21%  Similarity=0.316  Sum_probs=86.7

Q ss_pred             CCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccc
Q psy17757         86 RDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT  165 (225)
Q Consensus        86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~  165 (225)
                      ..+++|++++|.+++|.++.|.++.|.+|+|.+++|++++|+++.|.          +++|.+++|.+++|.+++|.+++
T Consensus        49 ~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~----------~a~l~~a~l~~a~L~~a~l~~a~  118 (184)
T 2f3l_A           49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFN----------GSALIGADLHGADLTNGLAYLTS  118 (184)
T ss_dssp             ---CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEE----------SCBCTTCBCTTCBCTTCEEEEEE
T ss_pred             ccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEe----------eeccCCCeEEEeecccceecCcE
Confidence            45677888888888888888888888888888888888888888888          66777777777777777777777


Q ss_pred             cCceeecccccccccccCcccCcccccCCCcCCccccCCcccccc
Q psy17757        166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAA  210 (225)
Q Consensus       166 l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~  210 (225)
                      |.+|+|.+++|.+|+|.+++|.+++|.+++|++|+|.+++++++-
T Consensus       119 f~~a~L~~a~l~~a~l~~a~f~~a~L~gadf~~a~l~~~~l~~~c  163 (184)
T 2f3l_A          119 FKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLC  163 (184)
T ss_dssp             CTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEECHHHHHHHH
T ss_pred             eCccEeCCCEeeCCEECCCEEeCCEecCCEecCCCCCcChHHHhh
Confidence            777777777777777777777777777777777777777776654

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0

Probab=99.84  E-value=2.6e-21  Score=144.85  Aligned_cols=28  Identities=32%  Similarity=0.374  Sum_probs=11.2

Q ss_pred             CCCCceeecccccCCcccccccccceee
Q psy17757        105 ITAELRFQGVNLAGSDLSRLDLRNINFK  132 (225)
Q Consensus       105 ~~~~~~f~~~~l~~~~f~~~~l~~~~f~  132 (225)
                      .|.+++|.+++|.+++|++++|.+++|.
T Consensus        17 ~l~~~~f~~~~l~~~~f~~~~l~~a~f~   44 (152)
T 3n90_A           17 DLSGKDFSGQTLIRQDFKTSILRQANFK   44 (152)
T ss_dssp             BCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred             CccCCcCCCCCcCcCccCCCeeCCCEeC
Confidence            3333333334444444444444444444

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A

Probab=99.83  E-value=9.6e-21  Score=167.75  Aligned_cols=47  Identities=30%  Similarity=0.398  Sum_probs=18.2

Q ss_pred             cCceeecccccccccccCcccCc--ccccCCCcCCccc-cCCcccccccc
Q psy17757        166 LKNANLQNCDLRAAVLAGADLEN--CDLSGSDLHEANL-RGANLKDAALE  212 (225)
Q Consensus       166 l~~~~f~~~~l~~a~f~~~~l~~--~~f~~~~l~~a~~-~~~~l~~~~~~  212 (225)
                      |.+|+|.+|+|.+|+|.+|+|.+  |+|++++|.+|+| .+++|+++.++
T Consensus       103 L~~A~LsgAdL~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAdLsgA~L~  152 (613)
T 3nb2_A          103 FENSNFSNSNLKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAILG  152 (613)
T ss_dssp             CTTCBCTTCBCTTCBCTTCBCSSSCCBCTTCBCTTCEECTTCCCTTCBCC
T ss_pred             eccCEecCCeecccEEeccEEecCccceeccccCCCeeCCCceecCCCcc
Confidence            33333333333333333333333  3333333333333 33333333333

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0

Probab=99.82  E-value=6.1e-21  Score=142.85  Aligned_cols=44  Identities=7%  Similarity=-0.017  Sum_probs=18.1

Q ss_pred             CCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceee
Q psy17757         89 MPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFK  132 (225)
Q Consensus        89 ~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~  132 (225)
                      ..|.+++|.+++|.++.|.+++|.+++|.+++|.+++|.+++|.
T Consensus         6 ~~~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~   49 (152)
T 3n90_A            6 GPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLL   49 (152)
T ss_dssp             CCCCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred             CcccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCC
Confidence            33444444444444444444444444444444444444444443

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A

Probab=99.80  E-value=5e-20  Score=163.17  Aligned_cols=114  Identities=26%  Similarity=0.228  Sum_probs=46.2

Q ss_pred             CCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCcc----ccCCcccCccc
Q psy17757         86 RDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGAN----LEGSNMAGVNL  161 (225)
Q Consensus        86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~----f~~~~l~~~~f  161 (225)
                      +.+++|++++|.+++|.+++|.+++|.+|+|.+|+|++++|.+++|.+|.+.++.+.+|+|.+++    |.+|+|.+++|
T Consensus        34 fsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~LsgAdL  113 (613)
T 3nb2_A           34 YSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNL  113 (613)
T ss_dssp             CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCBCTTCBC
T ss_pred             eCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCEecCCee
Confidence            33344444444444444444444444444444444444444444444444444333344444444    33333333333


Q ss_pred             cccccCceeecc--cccccccccCccc-CcccccCCCcCCc
Q psy17757        162 RVATLKNANLQN--CDLRAAVLAGADL-ENCDLSGSDLHEA  199 (225)
Q Consensus       162 ~~a~l~~~~f~~--~~l~~a~f~~~~l-~~~~f~~~~l~~a  199 (225)
                      .+|+|.+|.|.+  |+|.+|+|.+|+| .+++|++++|.++
T Consensus       114 ~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAdLsgA~L~~a  154 (613)
T 3nb2_A          114 KNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAILGDV  154 (613)
T ss_dssp             TTCBCTTCBCSSSCCBCTTCBCTTCEECTTCCCTTCBCCCC
T ss_pred             cccEEeccEEecCccceeccccCCCeeCCCceecCCCccCC
Confidence            333333333333  3333333333333 3333333333333

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A

Probab=99.67  E-value=3.8e-17  Score=143.05  Aligned_cols=45  Identities=18%  Similarity=0.205  Sum_probs=23.5

Q ss_pred             CCCcchhhhhhhhhccC------CCCCceeecccccCCcccccccccceee
Q psy17757         88 MMPLSRRDVINALILTP------ITAELRFQGVNLAGSDLSRLDLRNINFK  132 (225)
Q Consensus        88 ~~~~~~~~l~~~~l~~~------~~~~~~f~~~~l~~~~f~~~~l~~~~f~  132 (225)
                      +++|++++|.+++|.++      ...++++.+++|++|+|++++|++++|.
T Consensus        39 drDFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~   89 (627)
T 2qyu_A           39 DRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFD   89 (627)
T ss_dssp             TTBCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEE
T ss_pred             CCcCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccC
Confidence            34555555555555543      2334455555555555555555555555

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A

Probab=99.64  E-value=1.1e-16  Score=140.29  Aligned_cols=72  Identities=14%  Similarity=0.151  Sum_probs=31.5

Q ss_pred             cceecCccccCCcccCccccccccCceeecccccccccccCcccC--cccccCCCcCCccc-cCCcccccccccc
Q psy17757        143 SVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLE--NCDLSGSDLHEANL-RGANLKDAALELM  214 (225)
Q Consensus       143 ~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~--~~~f~~~~l~~a~~-~~~~l~~~~~~~~  214 (225)
                      +++|.+++|.+|+|++|+|.+|.|.+|+|.+|+|++|+|.+|+|.  +|+|.+|+|.+|+| .+|+|++|.+.++
T Consensus        80 ~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL~gA~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~a  154 (627)
T 2qyu_A           80 YSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDTTLKNTLIRHKANLSGVILNEP  154 (627)
T ss_dssp             TCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEECCCTTCCSCCEEEEEECTTCEECSCCEEEEEECCCC
T ss_pred             CCCCCCCccCCcccCCCchhhhccccceECCcCCCCcccCCccccCCCCeeCCCCCCCCccccCccCCCCcCCCC
Confidence            333444444444444444444444444444444444444444443  34444444444444 2444444444433

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=99.58  E-value=6.1e-16  Score=108.55  Aligned_cols=75  Identities=48%  Similarity=0.826  Sum_probs=67.3

Q ss_pred             CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHHH
Q psy17757          1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIM   80 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~~   80 (225)
                      ||++||+++.     .++...+++|+|||||||.+|++||+|+|.|+++++.......+++||+||++..+.+.+++.+.
T Consensus        31 ~L~~~~~~~~-----~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~~Ea~fy~l~~L~~~l~~~i~  105 (107)
T 3drz_A           31 FLYRLCQADP-----DLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIR  105 (107)
T ss_dssp             HHHHHHTTCG-----GGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             chhHHHhcCC-----CCCcCCCCCceEEecCChHHHHHHHHHhCCCeeCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            5889998875     45667789999999999999999999999999999888888899999999999999999988773

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=99.54  E-value=1e-14  Score=112.04  Aligned_cols=79  Identities=47%  Similarity=0.816  Sum_probs=68.0

Q ss_pred             CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHHH
Q psy17757          1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIM   80 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~~   80 (225)
                      ||++||+++.     .++...+++|+|||||||.+|++||+|+|.|+++++.......+++||+||++..+.+.+++.+.
T Consensus        37 ~L~~lfs~~~-----~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~eEA~FygL~~Lv~~l~~~i~  111 (202)
T 3drx_A           37 FLYRLCQADP-----DLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIR  111 (202)
T ss_dssp             STHHHHSCCC-----C----BCTTCCEEECSCSTTHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHhcCcc-----ccCcccCCCccEEecCChHHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence            6899999875     45677889999999999999999999999999999888888899999999999999999998886


Q ss_pred             hhcc
Q psy17757         81 SRER   84 (225)
Q Consensus        81 ~~~~   84 (225)
                      ..+.
T Consensus       112 ere~  115 (202)
T 3drx_A          112 ERDS  115 (202)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5543

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=99.39  E-value=2.4e-13  Score=96.12  Aligned_cols=63  Identities=27%  Similarity=0.427  Sum_probs=55.0

Q ss_pred             CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccc
Q psy17757          1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESL   71 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l   71 (225)
                      ||++||++.        +...+++|+|||||||.+|++||+|+|.|+++++.......+++||+||++...
T Consensus        30 ~L~~l~~~~--------~~~~~~~g~~FiDRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea~fy~i~~~   92 (115)
T 3kvt_A           30 RLSRLTEGM--------LNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSN   92 (115)
T ss_dssp             TTTTCCTTS--------TTEETTTTEEEECSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCGG
T ss_pred             cHHHHhcCC--------CCCCCCCCcEEEecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHhCCChH
Confidence            577888753        244578999999999999999999999999999888888999999999999764

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=99.37  E-value=2.6e-13  Score=93.55  Aligned_cols=64  Identities=20%  Similarity=0.312  Sum_probs=54.3

Q ss_pred             CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHh-CCcccCCCCChHhHHhhhhccCcccch
Q psy17757          1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRN-GQLVLDPNINPEGVLEEARFFGIESLV   72 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~-g~i~l~~~~~~~~vl~ea~F~~~~~l~   72 (225)
                      ||++|+++..        .-.+++|+|||||||.+|++||+|+|. |+++++.......+++||+||++..+.
T Consensus        26 ~L~~~~~~~~--------~~~~~~~eyFiDRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea~fy~i~~~~   90 (100)
T 1t1d_A           26 LLGNPQKRNR--------YYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGENA   90 (100)
T ss_dssp             TTTCHHHHGG--------GEETTTTEEEECSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCCHHH
T ss_pred             cccchhcccc--------ccCCCceeEEEcCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHHHHcCCCHHH
Confidence            5777876532        334578999999999999999999999 899998888889999999999997644

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=99.21  E-value=5.3e-12  Score=87.87  Aligned_cols=54  Identities=31%  Similarity=0.444  Sum_probs=48.9

Q ss_pred             CccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccch
Q psy17757         19 GDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV   72 (225)
Q Consensus        19 ~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~   72 (225)
                      ...+++|+|||||||.+|++||+|+|.|+++++.......+++||+||++..+.
T Consensus        34 ~~~~~~~~~FiDRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~Ea~fy~i~~l~   87 (105)
T 1nn7_A           34 FYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEI   87 (105)
T ss_dssp             GEEGGGTEEEECSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSCC
T ss_pred             cccCCCCcEEEeCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCCHHH
Confidence            345789999999999999999999999999998888888999999999998764

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=99.19  E-value=6.9e-12  Score=89.74  Aligned_cols=54  Identities=28%  Similarity=0.408  Sum_probs=49.3

Q ss_pred             CccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccch
Q psy17757         19 GDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV   72 (225)
Q Consensus        19 ~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~   72 (225)
                      ...+++|+|||||||.+|++||+|+|.|++.++.......+++||+||++..+.
T Consensus        47 ~~~~~~g~~FiDRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~Ea~fy~i~~l~  100 (124)
T 1s1g_A           47 FFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEI  100 (124)
T ss_dssp             TBCSSSCSEEECSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHTTCCGGG
T ss_pred             cccCCCCcEEEcCChHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCChHH
Confidence            446789999999999999999999999999998888889999999999998763

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=99.14  E-value=1.2e-11  Score=90.28  Aligned_cols=54  Identities=28%  Similarity=0.408  Sum_probs=49.2

Q ss_pred             CccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccch
Q psy17757         19 GDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV   72 (225)
Q Consensus        19 ~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~   72 (225)
                      ...+++|+|||||||.+|++||+|+|.|+++++.......+++||+||++..+.
T Consensus        69 ~~~~~~g~yFiDRdp~~F~~ILnflR~G~l~~p~~~~~~~l~eEa~fy~i~~l~  122 (140)
T 2nz0_B           69 FFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEI  122 (140)
T ss_dssp             SEETTTTEEEECSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHHHHHHHTCCGGG
T ss_pred             cccCCCCeEEEeCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHHHHHHcCCChHH
Confidence            446789999999999999999999999999998888889999999999998763

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=98.63  E-value=6.9e-09  Score=91.50  Aligned_cols=64  Identities=23%  Similarity=0.297  Sum_probs=53.2

Q ss_pred             CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHh-CCcccCCCCChHhHHhhhhccCcccch
Q psy17757          1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRN-GQLVLDPNINPEGVLEEARFFGIESLV   72 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~-g~i~l~~~~~~~~vl~ea~F~~~~~l~   72 (225)
                      ||++|+++..        .-.+++++|||||||.+|++||+|+|. |++.++.......+.+|++||+++...
T Consensus        77 ~l~~~~~~~~--------~~~~~~~~~f~DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~E~~f~~i~~~~  141 (514)
T 2r9r_B           77 LLGDPKKRMR--------YFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEA  141 (514)
T ss_dssp             TTTCHHHHGG--------GEETTTTEEEECSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHHHHHHTTCCHHH
T ss_pred             cccccccCCc--------ccCCCCCCEEEcCChHHHHHHHHHHhcCCccccCCcccHHHHHHHHHhcCCCHHH
Confidence            4566665432        344688999999999999999999999 999998888888999999999997643

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=92.63  E-value=0.14  Score=35.71  Aligned_cols=67  Identities=18%  Similarity=0.315  Sum_probs=53.3

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEE--cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI--DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi--drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      +++||.++..       .   ..+.+-+  +-+|..|+.+|+|+-.|.+.+.. .....++.-|++++++.+.+.+.+.+
T Consensus        55 F~~~f~~~~~-------e---~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~-~~~~~ll~~A~~~~i~~L~~~c~~~l  123 (127)
T 1r29_A           55 FYSIFTDQLK-------R---NLSVINLDPEINPEGFNILLDFMYTSRLNLRE-GNIMAVMATAMYLQMEHVVDTCRKFI  123 (127)
T ss_dssp             HHHHHTSTTT-------T---TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcCCcc-------C---CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCH-HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            5788887751       1   4455666  56888999999999999998754 56788999999999999988887776

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=91.50  E-value=0.23  Score=33.89  Aligned_cols=64  Identities=19%  Similarity=0.382  Sum_probs=49.5

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEEc---CCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLID---RSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEI   78 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fid---rd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~   78 (225)
                      +++||+++.             .+.+-|+   -+|..|+.+|+|+-.|.+.+.. .....++.-|++++++.+.+.+.+.
T Consensus        48 F~~~f~~~~-------------~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~-~~v~~ll~~A~~~~i~~L~~~C~~~  113 (116)
T 2vpk_A           48 FGAIYRSTS-------------ENNVFLDQSQVKADGFQKLLEFIYTGTLNLDS-WNVKEIHQAADYLKVEEVVTKCKIK  113 (116)
T ss_dssp             HHHHHTTCC-------------CSCEECCTTTCCHHHHHHHHHHHHHSCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCC-------------CCeEEeecCCCCHHHHHHHHHHHcCCCcccCH-HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            567887761             2334444   5888999999999999998754 4678899999999999888877665


Q ss_pred             H
Q psy17757         79 I   79 (225)
Q Consensus        79 ~   79 (225)
                      +
T Consensus       114 l  114 (116)
T 2vpk_A          114 M  114 (116)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=89.96  E-value=0.23  Score=33.42  Aligned_cols=67  Identities=18%  Similarity=0.263  Sum_probs=49.3

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      +++||+++.        .. .. ..+-+ +-+|..|+.+|.|+=.|.+.++. .....++.-|++++++.+.+.+.+.+
T Consensus        38 F~~~f~~~~--------~e-~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~-~~~~~ll~~A~~~~~~~L~~~c~~~l  105 (109)
T 2vkp_A           38 FYAMFYGDL--------AE-VK-SEIHIPDVEPAAFLILLKYMYSDEIDLEA-DTVLATLYAAKKYIVPALAKACVNFL  105 (109)
T ss_dssp             HHHHHC---------------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcCCc--------cc-CC-CeEEeCCCCHHHHHHHHHHHcCCCccCCH-HHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            567888764        11 11 44555 55888999999999999998765 45678999999999999888877766

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=88.29  E-value=0.58  Score=33.01  Aligned_cols=66  Identities=12%  Similarity=0.290  Sum_probs=50.7

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEE--cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI--DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi--drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      +++||+++..           +...+-+  +-++..|+.+|+|+=.|.+.+.. .....++.-|+++++..+.+.+.+.+
T Consensus        62 F~~~f~~~~~-----------e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~-~~v~~ll~~A~~~~i~~L~~~C~~~l  129 (138)
T 2z8h_A           62 FHSRIVGQTD-----------AELTVTLPEEVTVKGFEPLIQFAYTAKLILSK-DNVDEVCRCVEFLSVHNIEESCFQFL  129 (138)
T ss_dssp             HHHHHTTCCC-----------TTEEEECCTTSCHHHHHHHHHHHHHSCCCCCT-TTHHHHHHHHHHHTCGGGHHHHHHHT
T ss_pred             HHHHHhcCCC-----------CCceEEeCCCCCHHHHHHHHHHhcCCCcccCH-HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            5678887751           1233444  34677899999999999998765 45788999999999999999888777

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=87.98  E-value=0.22  Score=34.77  Aligned_cols=64  Identities=17%  Similarity=0.391  Sum_probs=46.6

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEE--cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI--DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi--drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      +++||++.             ....+-|  +-+|..|+.+|+|+-.|.+.+... ....++.-|+++++..+.+.+.+.+
T Consensus        59 F~~~f~~~-------------~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~-~~~~ll~~A~~~~i~~l~~~C~~~L  124 (129)
T 3ga1_A           59 FRDLFNNS-------------RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVG-DQDLLMYTAGFLQIQEIMEKGTEFF  124 (129)
T ss_dssp             HHHHHHHC-------------CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTT-THHHHHHHHHHTTBTTSSCC-----
T ss_pred             HHHHHcCC-------------CCCEEEECCCCCHHHHHHHHHHHhCCccccCHH-HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            45677765             2345555  467889999999999999988553 4778999999999999888776655

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=87.81  E-value=0.34  Score=35.36  Aligned_cols=68  Identities=18%  Similarity=0.271  Sum_probs=51.4

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      +++||+++..         ....+.+-+ +-+|..|+.+|+|+-.|.+.+.. .....++.-|++++++.+...+.+.+
T Consensus        60 F~~~f~~~~~---------e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~-~~~~~ll~~A~~~~~~~l~~~c~~~l  128 (172)
T 3htm_A           60 FSAMFEHEME---------ESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD-KMADDLLAAADKYALERLKVMCEDAL  128 (172)
T ss_dssp             HHHHHHSCCC---------GGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGG-GTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHccCcc---------ccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcH-HHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            5788887641         112234444 56899999999999999987644 45678999999999999998888877

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=86.97  E-value=0.33  Score=34.71  Aligned_cols=68  Identities=22%  Similarity=0.250  Sum_probs=47.2

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLME   77 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~   77 (225)
                      +++||.++.       .........+-+ +-+|..|+.+|.|+-.|.+.+.. .....++.-|++++++.+.+.+.+
T Consensus        73 F~~mf~~~~-------~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~-~~v~~ll~~A~~l~i~~L~~~C~~  141 (144)
T 2ppi_A           73 IRTKLNYNP-------PKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE-DTIQDVVQAADLLLLTDLKTLCCE  141 (144)
T ss_dssp             HHHHHHHCC------------CCCEEECCSSCHHHHHHHHHHHTTSCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHcCCC-------ccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhCcHHHHHHHHH
Confidence            567888764       111122334444 44788899999999999988754 457889999999999887765543

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=86.01  E-value=0.32  Score=33.40  Aligned_cols=68  Identities=21%  Similarity=0.389  Sum_probs=47.1

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      +++||+++..         ......+-+ +-+|..|+.+|+|+=.|.+.+.. .....++.-|++++++.+.+.+.+.+
T Consensus        51 F~~~f~~~~~---------e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~-~~~~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           51 FKKLFTSGAV---------VDQQNVYEIDFVSAEALTALMDFAYTATLTVST-ANVGDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             HHHHHHC--------------CCSEEECCSSCHHHHHHHHHHHHHSCCCCCG-GGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcCCcc---------ccCCceEEeCCCCHHHHHHHHHHHcCCCCccCH-HHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            5678887641         112223333 34788899999999999988754 35678999999999998888776554

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=85.96  E-value=0.61  Score=36.56  Aligned_cols=70  Identities=20%  Similarity=0.222  Sum_probs=47.7

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      +++||+++..       ........+-| +-+|..|+.+|.|+-.|.+.+.. .....++.-|.+++++.+...+.+.+
T Consensus        57 F~~mf~~~~~-------~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~-~~v~~ll~~A~~l~i~~l~~~c~~~L  127 (256)
T 3hve_A           57 IRTKLNYNPP-------KDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE-DTIQDVVQAADLLLLTDLKTLCCEFL  127 (256)
T ss_dssp             HHHTC------------------CEEECSSCCHHHHHHHHHHHHHSCCCCC--CCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhCCCCC-------cccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccH-hHHHHHHHHHHHHChHHHHHHHHHHH
Confidence            5678877641       11122233333 45788999999999999998755 56788999999999999999888877

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=84.26  E-value=0.78  Score=31.43  Aligned_cols=64  Identities=22%  Similarity=0.369  Sum_probs=48.0

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      +++||+++.             .+.+-| +-+|..|+.+|+|+=.|.+.+.. .....++.-|++++++.+.+.+.+.+
T Consensus        50 F~~~f~~~~-------------~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~-~~v~~ll~~A~~~~i~~L~~~C~~~l  114 (119)
T 3b84_A           50 FQSLYGDGS-------------GGSVVLPAGFAEIFGLLLDFFYTGHLALTS-GNRDQVLLAARELRVPEAVELCQSFK  114 (119)
T ss_dssp             HHHHHTTTT-------------CCCEEECGGGHHHHHHHHHHHHHSCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             HHHHHCCCC-------------CCeEEeCCCCHHHHHHHHHHHcCCCCccCH-HHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            567887763             122333 45688899999999999998765 45778999999999988887766544

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=81.88  E-value=0.75  Score=32.35  Aligned_cols=49  Identities=20%  Similarity=0.253  Sum_probs=40.9

Q ss_pred             cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757         30 DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus        30 drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      +-++..|+.+|+|+=.|.+.+.. .....++.-|++++++.+.+.+.+.+
T Consensus        67 ~~~~~~f~~lL~fiYtg~~~i~~-~~v~~ll~~A~~l~i~~L~~~C~~~l  115 (135)
T 2yy9_A           67 AGFAEIFGLLLDFFYTGHLALTS-GNRDQVLLAAKELRVPEAVELCQSFQ  115 (135)
T ss_dssp             GGGHHHHHHHHHHHHHSCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            45678899999999999998755 45788999999999998888776655

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=80.60  E-value=0.65  Score=36.95  Aligned_cols=68  Identities=18%  Similarity=0.248  Sum_probs=49.2

Q ss_pred             HHHHhccCCCCCccCCCCccCCCCCEEE-------cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHH
Q psy17757          2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-------DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQ   74 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-------drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~   74 (225)
                      +++||+++.         .....+.+-|       +-+|..|+.+|.|+-.|.+.+.. .....++.-|.+++++.+...
T Consensus        61 F~~mf~~~~---------~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~-~~v~~ll~~A~~l~i~~L~~~  130 (279)
T 3i3n_A           61 FTPLLSGQF---------SESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVST-GSVHEVLELADRFLLIRLKEF  130 (279)
T ss_dssp             SGGGCCC-----------------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEET-TTHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhcCCC---------ccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCH-HHHHHHHHHHHHHCcHHHHHH
Confidence            467887764         1222344555       45788899999999999998865 457789999999999999988


Q ss_pred             HHHHH
Q psy17757         75 LMEII   79 (225)
Q Consensus        75 l~~~~   79 (225)
                      +.+.+
T Consensus       131 c~~~L  135 (279)
T 3i3n_A          131 CGEFL  135 (279)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88777

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1nn7a_	105	d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus	6e-17
d3kvta_	103	d.42.1.2 (A:) akv3.1 voltage-gated potassium chann	3e-16
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	6e-15
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	6e-11
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	2e-08
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	7e-05
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	0.001
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	0.001
d1t1da_	100	d.42.1.2 (A:) Shaker potassium channel {California	1e-13
d2f3la1	132	b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya	1e-12
d2f3la1	132	b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya	4e-12
d2f3la1	132	b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya	5e-07
d2f3la1	132	b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya	5e-05
d2f3la1	132	b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya	1e-04
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	1e-08
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	7e-08
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	6e-07
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	5e-06
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	6e-06
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	2e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	2e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	5e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	5e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	7e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	2e-04
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	3e-04
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	4e-04
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	5e-04
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	6e-04
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	0.004

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 105

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.5 bits (175), Expect = 6e-17
 Identities = 18/61 (29%), Positives = 24/61 (39%)

Query: 12 GGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESL 71
          G    +      T  Y  DR P  F  ILN+ R G+L    +       EE  FFG+   
Sbjct: 27 GSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPE 86

Query: 72 V 72
          +
Sbjct: 87 I 87

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 103

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

 Score = 69.5 bits (170), Expect = 3e-16
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 22 DSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72
               Y  DR P  F  I+NY R+G+L    ++      EE  F+G++S  
Sbjct: 40 PVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQ 90

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 68.0 bits (165), Expect = 6e-15
 Identities = 27/98 (27%), Positives = 40/98 (40%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
                L  + L    L                   L  AN+  ++++  NL  A L  A+
Sbjct: 77  LSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGAD 136

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKD 208
           L   DL  A L  A LE  +L+G++L +ANL G  L+ 
Sbjct: 137 LAIADLHQANLHQAALERANLTGANLEDANLEGTILEG 174

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 57.2 bits (137), Expect = 6e-11
 Identities = 35/137 (25%), Positives = 46/137 (33%), Gaps = 35/137 (25%)

Query: 111 FQGVNLAGSDLSRLDLRNINFK------------------------------VRKGLTLP 140
           F  V+L G+ L  ++L                                            
Sbjct: 17  FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKAD 76

Query: 141 ACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDL---- 196
                L  A LEG+ +    L  A LK ANL+   L  A +  ADL   +L  +DL    
Sbjct: 77  LSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGAD 136

Query: 197 -HEANLRGANLKDAALE 212
              A+L  ANL  AALE
Sbjct: 137 LAIADLHQANLHQAALE 153

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 18/87 (20%), Positives = 33/87 (37%)

Query: 91  LSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGAN 150
           L    +  A++          +   L+ +++   DL   N +            +L  AN
Sbjct: 87  LEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQAN 146

Query: 151 LEGSNMAGVNLRVATLKNANLQNCDLR 177
           L  + +   NL  A L++ANL+   L 
Sbjct: 147 LHQAALERANLTGANLEDANLEGTILE 173

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 39.9 bits (92), Expect = 7e-05
 Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 45/113 (39%)

Query: 145 NLKGANLEGSNMAGVNLRVATLKNANL--------------------------------- 171
           +    +L G+ +  +NL  A L  A L                                 
Sbjct: 16  DFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKA 75

Query: 172 ------------QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
                       +   L  AVL  A+L+  +L  + L  AN+R A+L +A LE
Sbjct: 76  DLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLE 128

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 175 DLRAAVLAG-ADLENCDLSGSDLHEANLRGANLKDAAL 211
            LR    AG  D    DL G+ L   NL GA L  A L
Sbjct: 5   KLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAML 42

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 169 ANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGAN 205
            +    DLR AVL   +L    L G+ L EANL+ AN
Sbjct: 15  RDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQAN 51

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 100

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

 Score = 62.5 bits (152), Expect = 1e-13
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 9/73 (12%)

Query: 1  MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRN-GQLVLDPNINPEGV 59
          +L              N         Y  DR+   F+ IL + ++ G+L    N+  +  
Sbjct: 26 LLGNPQKR--------NRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVF 77

Query: 60 LEEARFFGIESLV 72
           EE +F+ +    
Sbjct: 78 SEEIKFYELGENA 90

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

 Score = 61.0 bits (147), Expect = 1e-12
 Identities = 22/97 (22%), Positives = 41/97 (42%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           F G +L  +  +  DL + NF              L GA+L G+++      + + K A+
Sbjct: 13  FSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGAD 72

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLK 207
           L N  L  A++     ++  ++G+D   A L    + 
Sbjct: 73  LTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVD 109

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

 Score = 59.0 bits (142), Expect = 4e-12
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 111 FQGVNLAGSDLSRLDLRNINF-----KVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT 165
           ++ V L G D S   L    F                     G+ L G+++ G +L    
Sbjct: 3   YEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGL 62

Query: 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELM 214
               + +  DL  AVL  A +       + +  A+   A L    ++ +
Sbjct: 63  AYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKL 111

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

 Score = 45.2 bits (106), Expect = 5e-07
 Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 40/105 (38%)

Query: 149 ANLEGSNMAGVNLRVATLKNANLQNCDLRAA----------------------------- 179
           A+ E   + G +    +L  A   N DL  +                             
Sbjct: 1   ASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTN 60

Query: 180 -----------VLAGADLENCDLSGSDLHEANLRGANLKDAALEL 213
                       L  A L    +  +   +A + GA+   A L++
Sbjct: 61  GLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDV 105

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 184 ADLENCDLSGSDLHEANLRGANLKDAALELM 214
           A  E+  L G D    +L  A   +A L   
Sbjct: 1   ASYEDVKLIGEDFSGKSLTYAQFTNADLTDS 31

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 10/44 (22%), Positives = 13/44 (29%)

Query: 179 AVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQ 222
           A      L   D SG  L  A    A+L D+          +  
Sbjct: 1   ASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFN 44

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 7/40 (17%), Positives = 13/40 (32%)

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDA 209
              +C+         DL       +   E +  G NL ++
Sbjct: 2   QWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAES 41

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.5 bits (114), Expect = 7e-08
 Identities = 8/38 (21%), Positives = 11/38 (28%)

Query: 168 NANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGAN 205
           +      D R   L+    E    S  D    NL  + 
Sbjct: 5   DCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQ 42

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.8 bits (107), Expect = 6e-07
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 164 ATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEAN 200
                 + ++ DL       A    CD SG +L E+ 
Sbjct: 6   CEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQ 42

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.1 bits (100), Expect = 5e-06
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 172 QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELM 214
           +  DL  A   GA L++ DL G+ +     R A+L  A +++ 
Sbjct: 124 RGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVD 166

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 5/52 (9%)

Query: 155 NMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANL 206
           ++    LR A L  A      L       ADL    +       A+L GA +
Sbjct: 117 DLRKCVLRGADLSGARTTGARLD-----DADLRGATVDPVLWRTASLVGARV 163

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 3/35 (8%), Positives = 12/35 (34%)

Query: 145 NLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAA 179
              G +    +++ ++   A     +    +L  +
Sbjct: 7   EFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAES 41

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 7/41 (17%), Positives = 11/41 (26%)

Query: 149 ANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENC 189
               G +    +L     + A    CD     LA +     
Sbjct: 6   CEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGS 46

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 4/29 (13%), Positives = 7/29 (24%)

Query: 184 ADLENCDLSGSDLHEANLRGANLKDAALE 212
            +    D    DL   +   A   +    
Sbjct: 6   CEFTGRDFRDEDLSRLHTERAMFSECDFS 34

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 5/38 (13%), Positives = 12/38 (31%)

Query: 160 NLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLH 197
                  ++ +L       A+ +  D    +L+ S   
Sbjct: 7   EFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHR 44

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           +L+ C LR A L+GA      L  +DL  A +     + A+L 
Sbjct: 117 DLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLV 159

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 142 CSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVL------AGADLENCDLSG 193
              +L GA   G+ +   +LR AT+     +   L  A +      A A      L+G
Sbjct: 124 RGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAG 181

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 5/28 (17%), Positives = 12/28 (42%)

Query: 185 DLENCDLSGSDLHEANLRGANLKDAALE 212
              +C+ +G D  + +L   + + A   
Sbjct: 2   QWVDCEFTGRDFRDEDLSRLHTERAMFS 29

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 154 SNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSD-LHEANLRGANL 206
           ++++G     A L +A+L+   +   +   A L    +     +  A   G  L
Sbjct: 126 ADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCL 179

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 10/49 (20%)

Query: 108 ELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNM 156
           +  F G +    DLSRL      F             +  G NL  S  
Sbjct: 5   DCEFTGRDFRDEDLSRLHTERAMFS----------ECDFSGVNLAESQH 43

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.0 bits (84), Expect = 6e-04
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 15/65 (23%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
           ++      G D    DL                 ++ + A     + +GVNL  +  + +
Sbjct: 2   QWVDCEFTGRDFRDEDLSR---------------LHTERAMFSECDFSGVNLAESQHRGS 46

Query: 170 NLQNC 174
             +NC
Sbjct: 47  AFRNC 51

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 172 QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
            + DLR  VL GADL     +G+ L +A+LRGA +      
Sbjct: 114 VDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWR 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d2j8ka1	175	NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}	99.88
d2j8ka1	175	NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}	99.87
d2bm5a1	181	Hypothetical protein Rv3361c (MT3469) {Mycobacteri	99.86
d2bm5a1	181	Hypothetical protein Rv3361c (MT3469) {Mycobacteri	99.86
d2f3la1	132	Lumenal RFR-domain protein {Cyanothece sp. atcc 51	99.82
d2f3la1	132	Lumenal RFR-domain protein {Cyanothece sp. atcc 51	99.82
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	99.32
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	99.25
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	99.24
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	89.81

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.88  E-value=1.4e-23  Score=158.94  Aligned_cols=71  Identities=49%  Similarity=0.593  Sum_probs=28.2

Q ss_pred             cceecCccccCCcccCccccccccCceeecccccccccccCcccCcccccCCCcCCccccCCccccccccc
Q psy17757        143 SVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALEL  213 (225)
Q Consensus       143 ~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~~  213 (225)
                      ++.+.+++|.++.|.+++|.+++|.+++|.+++|.++.+.+++|++++|.+++|.+++|.+++|++++|++
T Consensus        99 ~~~~~~~~~~~s~~~~~~f~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~l~~a~~~g  169 (175)
T d2j8ka1          99 QANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEG  169 (175)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred             ecccccccccCCEeCCCEeccCCCCCCccccCCCccccccccccCcCCcCCCEeCCCCcCCCCcCCCEEec
Confidence            33333333333333333333333333333333444444444444444444444444444444444444433

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.87  E-value=1.1e-22  Score=154.01  Aligned_cols=21  Identities=19%  Similarity=0.097  Sum_probs=8.0

Q ss_pred             hCCcccCCCCChHhHHhhhhc
Q psy17757         45 NGQLVLDPNINPEGVLEEARF   65 (225)
Q Consensus        45 ~g~i~l~~~~~~~~vl~ea~F   65 (225)
                      -|+..+....+....+++++|
T Consensus        12 ~~e~dF~~~dls~~~f~~~~f   32 (175)
T d2j8ka1          12 AGERDFSIVDLRGAVLENINL   32 (175)
T ss_dssp             TTCCBCTTCBCTTCBCTTCBC
T ss_pred             hcccCcCcCcCCCCccCCcCC
Confidence            344334333333333333333

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=9.7e-23  Score=155.12  Aligned_cols=109  Identities=24%  Similarity=0.304  Sum_probs=42.1

Q ss_pred             CCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccccCceeecccccccccccC
Q psy17757        104 PITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAG  183 (225)
Q Consensus       104 ~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~  183 (225)
                      +.+.++.|.+|.+.+++|.++++.++.|.++.+.++.+.+++|.+++|.++.|.+++|.+++|.++.|.+|+|++++|.+
T Consensus        56 ~~l~~~~f~~~~l~~~~f~~a~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~  135 (181)
T d2bm5a1          56 TTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTG  135 (181)
T ss_dssp             CBCTTCEEEEEECTTCEEESCBCCSCEEEEEECTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhcccceecccccccchhheeecCcCccC
Confidence            33333333333333333333333333333333333333333333333333333333333333333333344444444444


Q ss_pred             cccCcccccCCCcCCccccCCcccccccc
Q psy17757        184 ADLENCDLSGSDLHEANLRGANLKDAALE  212 (225)
Q Consensus       184 ~~l~~~~f~~~~l~~a~~~~~~l~~~~~~  212 (225)
                      ++|.+++|+++.+.++++.+++|+++.++
T Consensus       136 a~l~~adf~~~~~~~~~~~~a~l~ga~~~  164 (181)
T d2bm5a1         136 ARLDDADLRGATVDPVLWRTASLVGARVD  164 (181)
T ss_dssp             CBCTTCBCTTCBCCHHHHHHSBCTTCBCC
T ss_pred             CCcCCCCcCCCEecCCCcCCCEecccEEc
Confidence            44444444444444444444444444333

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=1.5e-23  Score=159.74  Aligned_cols=123  Identities=26%  Similarity=0.353  Sum_probs=50.1

Q ss_pred             CCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCcc----------ccCCccc
Q psy17757         88 MMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGAN----------LEGSNMA  157 (225)
Q Consensus        88 ~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~----------f~~~~l~  157 (225)
                      +++|.++.|.+++|.++.|.++.|.+|.|.+|+|++++|.+++|.+|.+.++.+.+++++++.          |.+++|.
T Consensus        20 ~~~~~~~~f~~~~f~~~~l~~~~f~~~~f~~~~f~~~~l~~~~f~~~~l~~~~f~~a~l~~~~~~~~~~~~~~f~~~~~~   99 (181)
T d2bm5a1          20 RLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLR   99 (181)
T ss_dssp             TCEEESCEEESCBCTTCBCTTCEEESCEEESCEEESCBCTTCEEEEEECTTCEEESCBCCSCEEEEEECTTCBCTTCBCT
T ss_pred             CCCcCCCeeeCCCccCccCCCCcccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence            333333344444444444444444444444444444444444444444444333333333333          3333333


Q ss_pred             CccccccccCceeecccccccccccCcccCcccccCCCcCCccccCCcccccc
Q psy17757        158 GVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAA  210 (225)
Q Consensus       158 ~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~  210 (225)
                      +++|.++.|.++.|.+++|.+++|.+++|.+++|.+++|.+++|+++.+.++.
T Consensus       100 ~~~~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~a~l~~adf~~~~~~~~~  152 (181)
T d2bm5a1         100 GLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVL  152 (181)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHH
T ss_pred             cccccchhhcccceecccccccchhheeecCcCccCCCcCCCCcCCCEecCCC
Confidence            33333333333333334444444444444444444444444444333333333

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

Probab=99.82  E-value=5.8e-21  Score=137.87  Aligned_cols=108  Identities=21%  Similarity=0.301  Sum_probs=55.7

Q ss_pred             CcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccccCce
Q psy17757         90 PLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA  169 (225)
Q Consensus        90 ~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~~  169 (225)
                      .|++++|.+++|+++.|.++.|.+|+|.+++|++++|.++.|.          ++.|.+++|.+++|.+++|.+++|.++
T Consensus         2 ~F~~~~L~~~dfs~~~l~~a~f~~~~L~~~~f~~a~l~ga~f~----------~~~l~~~~~~~a~l~~a~~~~~~~~~~   71 (132)
T d2f3la1           2 SYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFN----------GSALIGADLHGADLTNGLAYLTSFKGA   71 (132)
T ss_dssp             EEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEE----------SCBCTTCBCTTCBCTTCEEEEEECTTC
T ss_pred             ccCCCCccCCcCCCCcCCCCcccCCCCccccccccccceeeec----------ccccccccccccccccccccccccchh
Confidence            3556666666666666666677777777777776666666666          444444444444444444444444443


Q ss_pred             eecccccccccccCcccCcccccCCCcCCccccCCcccccccc
Q psy17757        170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE  212 (225)
Q Consensus       170 ~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~  212 (225)
                      +|.+++|.+++     |.+++|.+++|.+++|++++|.+++++
T Consensus        72 ~~~~a~~~~a~-----l~~a~~~~a~l~~adfs~a~L~~~~l~  109 (132)
T d2f3la1          72 DLTNAVLTEAI-----MMRTKFDDAKITGADFSLAVLDVYEVD  109 (132)
T ss_dssp             BCTTCBCTTCE-----EEEEECTTCBCTTCBCTTCEECHHHHH
T ss_pred             hhccCCcCCCC-----cCCCCcCCCEECcCCCCCccCCHHHHH
Confidence            33333333333     333333333334444444444444443

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

Probab=99.82  E-value=1.8e-21  Score=140.58  Aligned_cols=105  Identities=25%  Similarity=0.347  Sum_probs=65.5

Q ss_pred             eeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccccCceeecccccccccccCcccCcc
Q psy17757        110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENC  189 (225)
Q Consensus       110 ~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~  189 (225)
                      .|++|+|++++|++++|.+++|.+|++.++.+.+++|.++.|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.++
T Consensus         2 ~F~~~~L~~~dfs~~~l~~a~f~~~~L~~~~f~~a~l~ga~f~~~~l~~~~~~~a~l~~a~~~~~~~~~~~~~~a~~~~a   81 (132)
T d2f3la1           2 SYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEA   81 (132)
T ss_dssp             EEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTC
T ss_pred             ccCCCCccCCcCCCCcCCCCcccCCCCccccccccccceeeecccccccccccccccccccccccccchhhhccCCcCCC
Confidence            35555555555555555555555555555555566666666666666666666666666666666666666666666666


Q ss_pred             cccCCCcCCccccCCcccccccccc
Q psy17757        190 DLSGSDLHEANLRGANLKDAALELM  214 (225)
Q Consensus       190 ~f~~~~l~~a~~~~~~l~~~~~~~~  214 (225)
                      +|.+++|.+++|.+++|+++.++++
T Consensus        82 ~l~~a~~~~a~l~~adfs~a~L~~~  106 (132)
T d2f3la1          82 IMMRTKFDDAKITGADFSLAVLDVY  106 (132)
T ss_dssp             EEEEEECTTCBCTTCBCTTCEECHH
T ss_pred             CcCCCCcCCCEECcCCCCCccCCHH
Confidence            6666666666666666666666543

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=99.32  E-value=6.3e-13  Score=90.60  Aligned_cols=52  Identities=31%  Similarity=0.535  Sum_probs=47.8

Q ss_pred             CccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCccc
Q psy17757         19 GDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIES   70 (225)
Q Consensus        19 ~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~   70 (225)
                      ..++++|+|||||||.+|++||+|+|.|.+++++......++.||+||+++.
T Consensus        37 ~~~~~~~~~fiDRdp~~F~~IL~ylR~g~l~~p~~~~~~~l~~Ea~yygi~~   88 (103)
T d3kvta_          37 NYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDS   88 (103)
T ss_dssp             TEETTTTEEEECSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCG
T ss_pred             ccCCCCCcEEecCCHHHHHHHHHHHccCCcccccccCHHHHHHHHHHcCCCH
Confidence            4468899999999999999999999999999988888889999999999974

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=1.5e-12  Score=88.95  Aligned_cols=53  Identities=32%  Similarity=0.433  Sum_probs=48.9

Q ss_pred             CccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccc
Q psy17757         19 GDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESL   71 (225)
Q Consensus        19 ~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l   71 (225)
                      ..++++|+|||||||..|++||+|+|.|++++++......+++||+||+++.+
T Consensus        34 ~~~~~~~~~FiDRdp~~F~~IL~ylR~G~l~~p~~~~~~~l~~Ea~fygi~~~   86 (105)
T d1nn7a_          34 FYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPE   86 (105)
T ss_dssp             GEEGGGTEEEECSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSC
T ss_pred             CcCCCCCcEEEeCCHHHHHHHHHHHhcCccccCCCccHHHHHHHHHHcCCCHH
Confidence            45688999999999999999999999999999998888999999999999764

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=99.24  E-value=2.1e-12  Score=87.33  Aligned_cols=62  Identities=21%  Similarity=0.338  Sum_probs=51.6

Q ss_pred             CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHh-CCcccCCCCChHhHHhhhhccCccc
Q psy17757          1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRN-GQLVLDPNINPEGVLEEARFFGIES   70 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~-g~i~l~~~~~~~~vl~ea~F~~~~~   70 (225)
                      ||++|++...        ...+++|+|||||||..|++||+|+|. |.+++++......+++||+||+++.
T Consensus        26 ~l~~l~~~~~--------~~~~~~g~~FiDRdp~~F~~IL~flR~~~~l~~~~~~~~~~l~~Ea~y~gi~~   88 (100)
T d1t1da_          26 LLGNPQKRNR--------YYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGE   88 (100)
T ss_dssp             TTTCHHHHGG--------GEETTTTEEEECSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCCH
T ss_pred             hhHHHHhCCC--------cCCCCCCeEEEecCHHHHHHHHHHHhcCCCcCCCCcccHHHHHHHHHHcCCCH
Confidence            5677776543        346888999999999999999999998 5666777777889999999999875

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.81  E-value=0.076  Score=35.30  Aligned_cols=49  Identities=22%  Similarity=0.402  Sum_probs=41.9

Q ss_pred             cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757         30 DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII   79 (225)
Q Consensus        30 drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~   79 (225)
                      +-+|..|+.+|+|+=.|++.+... ....++.-|++++++.+.+.+.+.+
T Consensus        71 ~v~~~~f~~ll~~~Ytg~~~i~~~-~v~~ll~~A~~l~i~~L~~~C~~~L  119 (122)
T d1r29a_          71 EINPEGFNILLDFMYTSRLNLREG-NIMAVMATAMYLQMEHVVDTCRKFI  119 (122)
T ss_dssp             TSCHHHHHHHHHHHHHSCCCCCTT-THHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHhhhcCCeecCchh-hHHHHHHHHHHHCcHHHHHHHHHHH
Confidence            457788999999999999987654 5778999999999999999888776