Psyllid ID: psy17766

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSNDTLSVLVLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
HHHHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MSIMNSFVNDIFERIAAESSRLahynkrstiTSREIQTAVRLLLPGELAKHAVSEGTKAVTkytssndtlsVLVLPINIKAMSIMNSFVNDIFERIAAESSRLahynkrstiTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Flexible Loop (DISEMBL)
MSIMNSFVNDIFERIAAEssrlahynkrstitsreIQTAVRLLLPGELAKHAVSEGTKAvtkytssndtlsVLVLPINIKAMSIMNSFVNDIFERIAAESSRLahynkrstitsreIQTAVRLLLPGelakhavsegtkavtkytssk
Low Complexity Region (SEG)
MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSNDTLSVLVLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Disordered region (IsUnstruct)
******FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSNDTLSVLVLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA******************
Disordered Region (DISOPRED)
MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL****************SSNDTLSVLVLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKY****
Disordered Region (DISEMBL)
MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSNDTLSVLVLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHA***************
Disordered Region (DISPRO)
*SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSNDTLSVLVLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV*KYT***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSNDTLSVLVLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q27442	124	Histone H2B OS=Anopheles	yes	N/A	0.486	0.580	0.958	2e-33
P83863	116	Histone H2B (Fragments) O	N/A	N/A	0.486	0.620	0.958	2e-33
Q8I1N0	123	Histone H2B OS=Drosophila	N/A	N/A	0.486	0.585	0.958	3e-33
Q76FF3	123	Histone H2B OS=Drosophila	N/A	N/A	0.486	0.585	0.958	3e-33
P59782	123	Histone H2B OS=Drosophila	N/A	N/A	0.486	0.585	0.958	3e-33
Q76FE9	123	Histone H2B OS=Drosophila	N/A	N/A	0.486	0.585	0.958	3e-33
P02283	123	Histone H2B OS=Drosophila	yes	N/A	0.486	0.585	0.958	3e-33
Q76FE5	123	Histone H2B OS=Drosophila	N/A	N/A	0.486	0.585	0.958	3e-33
P59781	123	Histone H2B OS=Drosophila	N/A	N/A	0.486	0.585	0.958	3e-33
P0C1H5	126	Histone H2B 7 OS=Gallus g	yes	N/A	0.486	0.571	0.944	4e-33

>sp|Q27442|H2B_ANOGA Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=2 SV=5

 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 53  ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 112

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 113 GTKAVTKYTSSK 124

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
Anopheles gambiae (taxid: 7165)

>sp|P83863|H2B_LITVA Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 45  ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 104

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 105 GTKAVTKYTSSK 116

A mixture of histones H2B and H4 has antimicrobial activity against the Gram-positive bacterium M.luteus.

Litopenaeus vannamei (taxid: 6689)

>sp|Q8I1N0|H2B_DROYA Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=3

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 52  ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 112 GTKAVTKYTSSK 123

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Drosophila yakuba (taxid: 7245)

>sp|Q76FF3|H2B_DROTE Histone H2B OS=Drosophila teissieri GN=His2B PE=3 SV=3

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 52  ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 112 GTKAVTKYTSSK 123

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Drosophila teissieri (taxid: 7243)

>sp|P59782|H2B_DROSI Histone H2B OS=Drosophila simulans GN=His2B PE=3 SV=2

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 52  ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 112 GTKAVTKYTSSK 123

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Drosophila simulans (taxid: 7240)

>sp|Q76FE9|H2B_DROOR Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 52  ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 112 GTKAVTKYTSSK 123

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Drosophila orena (taxid: 7233)

>sp|P02283|H2B_DROME Histone H2B OS=Drosophila melanogaster GN=His2B PE=1 SV=2

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 52  ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 112 GTKAVTKYTSSK 123

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Drosophila melanogaster (taxid: 7227)

>sp|Q76FE5|H2B_DROMA Histone H2B OS=Drosophila mauritiana GN=His2B PE=3 SV=3

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 52  ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 112 GTKAVTKYTSSK 123

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Drosophila mauritiana (taxid: 7226)

>sp|P59781|H2B_DROER Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=2

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 52  ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 112 GTKAVTKYTSSK 123

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Drosophila erecta (taxid: 7220)

>sp|P0C1H5|H2B7_CHICK Histone H2B 7 OS=Gallus gallus GN=H2B-VII PE=1 SV=2

 Score =  140 bits (352), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 70/72 (97%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 55  ISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 114

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 115 GTKAVTKYTSSK 126

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
401887789	207	histone H2B [Trichosporon asahii var. as	0.905	0.647	0.719	1e-53
301792130	255	PREDICTED: histone H3.2-like [Ailuropoda	0.932	0.541	0.554	2e-33
301628156	255	PREDICTED: histone H3.2-like [Xenopus (S	0.932	0.541	0.536	1e-32
301629548	255	PREDICTED: histone H3.2-like [Xenopus (S	0.932	0.541	0.536	1e-32
301632302	241	PREDICTED: histone H3.2-like, partial [X	0.932	0.572	0.536	2e-32
403182595	333	AAEL015684-PA [Aedes aegypti]	0.486	0.216	0.944	6e-32
38564183	123	histone 2B [Drosophila sechellia]	0.486	0.585	0.958	7e-32
346470067	124	hypothetical protein [Amblyomma maculatu	0.486	0.580	0.958	1e-31
290561567	124	Histone H2B [Lepeophtheirus salmonis]	0.486	0.580	0.958	1e-31
328699742	126	PREDICTED: histone H2B.3-like [Acyrthosi	0.486	0.571	0.944	1e-31

>gi|401887789|gb|EJT51767.1| histone H2B [Trichosporon asahii var. asahii CBS 2479]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/146 (71%), Positives = 126/146 (86%), Gaps = 12/146 (8%)

Query: 1   MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
           M+I+NSFV DIFERIA E+S+LA YN RSTI+SREIQTAVRL+LPGEL+KHA+SEGTKAV
Sbjct: 73  MAILNSFVADIFERIATEASKLASYNHRSTISSREIQTAVRLILPGELSKHAISEGTKAV 132

Query: 61  TKYTSSNDTLSVLVLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTA 120
           TK+T++N            KAM+I+NSFV DIFERIA E+S+LA YN RSTI+SREIQTA
Sbjct: 133 TKFTTNN------------KAMAILNSFVADIFERIATEASKLASYNHRSTISSREIQTA 180

Query: 121 VRLLLPGELAKHAVSEGTKAVTKYTS 146
           VRL+LPGEL+KHA+SEGTKAVTK+T+
Sbjct: 181 VRLILPGELSKHAISEGTKAVTKFTT 206

Source: Trichosporon asahii var. asahii CBS 2479

Species: Trichosporon asahii

Genus: Trichosporon

Order: Tremellales

Class: Tremellomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|301792130|ref|XP_002931030.1| PREDICTED: histone H3.2-like [Ailuropoda melanoleuca]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/164 (55%), Positives = 109/164 (66%), Gaps = 26/164 (15%)

Query: 5   NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK-AVTKY 63
            +++  +FE    +++  A + KR TI  ++IQ A R+   GE +  A  +G+K AVTK 
Sbjct: 98  EAYLVGLFE----DTNLCAIHAKRVTIMPKDIQLARRIR--GERSAPAPKKGSKKAVTKV 151

Query: 64  T---------SSNDTLSVLVLP----------INIKAMSIMNSFVNDIFERIAAESSRLA 104
                     S  ++ SV V            I+ KAM IMNSFVNDIFERIA E+SRLA
Sbjct: 152 QKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLA 211

Query: 105 HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 148
           HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 212 HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 255

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301628156|ref|XP_002943224.1| PREDICTED: histone H3.2-like [Xenopus (Silurana) tropicalis]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 106/164 (64%), Gaps = 26/164 (15%)

Query: 5   NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT 64
            +++  +FE    +++  A + KR TI  ++IQ A R+   GE +  A  +G+K     T
Sbjct: 98  EAYLVGLFE----DTNLCAIHAKRVTIMPKDIQLARRIR--GERSAPAAKKGSKKAVTKT 151

Query: 65  SSND---------------TLSVL--VLP---INIKAMSIMNSFVNDIFERIAAESSRLA 104
              D                  VL  V P   I+ KAMSIMNSFVND+FERIA E+SRLA
Sbjct: 152 QKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLA 211

Query: 105 HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 148
           HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 212 HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 255

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301629548|ref|XP_002943900.1| PREDICTED: histone H3.2-like [Xenopus (Silurana) tropicalis] gi|301631762|ref|XP_002944963.1| PREDICTED: histone H3.2-like isoform 1 [Xenopus (Silurana) tropicalis]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 106/164 (64%), Gaps = 26/164 (15%)

Query: 5   NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT 64
            +++  +FE    +++  A + KR TI  ++IQ A R+   GE +  A  +G+K     T
Sbjct: 98  EAYLVGLFE----DTNLCAIHAKRVTIMPKDIQLARRIR--GERSAPAPKKGSKKAVTKT 151

Query: 65  SSND---------------TLSVL--VLP---INIKAMSIMNSFVNDIFERIAAESSRLA 104
              D                  VL  V P   I+ KAMSIMNSFVND+FERIA E+SRLA
Sbjct: 152 QKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLA 211

Query: 105 HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 148
           HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 212 HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 255

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301632302|ref|XP_002945228.1| PREDICTED: histone H3.2-like, partial [Xenopus (Silurana) tropicalis]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 106/164 (64%), Gaps = 26/164 (15%)

Query: 5   NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT 64
            +++  +FE    +++  A + KR TI  ++IQ A R+   GE +  A  +G+K     T
Sbjct: 84  EAYLVGLFE----DTNLCAIHAKRVTIMPKDIQLARRIR--GERSAPAPKKGSKKAVTKT 137

Query: 65  SSND---------------TLSVL--VLP---INIKAMSIMNSFVNDIFERIAAESSRLA 104
              D                  VL  V P   I+ KAMSIMNSFVND+FERIA E+SRLA
Sbjct: 138 QKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLA 197

Query: 105 HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 148
           HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 198 HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 241

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403182595|gb|EAT45033.2| AAEL015684-PA [Aedes aegypti]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 71/72 (98%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           ++ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 262 VSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 321

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 322 GTKAVTKYTSSK 333

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|38564183|dbj|BAD02446.1| histone 2B [Drosophila sechellia]

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 72/72 (100%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I++KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 52  ISLKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 112 GTKAVTKYTSSK 123

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346470067|gb|AEO34878.1| hypothetical protein [Amblyomma maculatum]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           ++ KAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 53  VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 112

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 113 GTKAVTKYTSSK 124

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290561567|gb|ADD38184.1| Histone H2B [Lepeophtheirus salmonis]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           ++ KAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 53  VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 112

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 113 GTKAVTKYTSSK 124

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328699742|ref|XP_003241030.1| PREDICTED: histone H2B.3-like [Acyrthosiphon pisum] gi|328699758|ref|XP_003241035.1| PREDICTED: histone H2B.3-like [Acyrthosiphon pisum] gi|328713529|ref|XP_003245104.1| PREDICTED: histone H2B.3-like [Acyrthosiphon pisum] gi|328726557|ref|XP_003248948.1| PREDICTED: histone H2B.3-like [Acyrthosiphon pisum]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 71/72 (98%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           ++ KAMSIMNSFVND+FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 55  VSSKAMSIMNSFVNDLFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 114

Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 115 GTKAVTKYTSSK 126

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
UNIPROTKB|P83863	116	P83863 "Histone H2B" [Litopena	0.675	0.862	0.742	6.9e-31
FB|FBgn0061209	123	His2B:CG17949 "His2B:CG17949"	0.486	0.585	0.958	3e-30
FB|FBgn0053868	123	His2B:CG33868 "His2B:CG33868"	0.486	0.585	0.958	3e-30
FB|FBgn0053870	123	His2B:CG33870 "His2B:CG33870"	0.486	0.585	0.958	3e-30
FB|FBgn0053872	123	His2B:CG33872 "His2B:CG33872"	0.486	0.585	0.958	3e-30
FB|FBgn0053874	123	His2B:CG33874 "His2B:CG33874"	0.486	0.585	0.958	3e-30
FB|FBgn0053876	123	His2B:CG33876 "His2B:CG33876"	0.486	0.585	0.958	3e-30
FB|FBgn0053878	123	His2B:CG33878 "His2B:CG33878"	0.486	0.585	0.958	3e-30
FB|FBgn0053880	123	His2B:CG33880 "His2B:CG33880"	0.486	0.585	0.958	3e-30
FB|FBgn0053882	123	His2B:CG33882 "His2B:CG33882"	0.486	0.585	0.958	3e-30

UNIPROTKB|P83863 P83863 "Histone H2B" [Litopenaeus vannamei (taxid:6689)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 78/105 (74%), Positives = 86/105 (81%)

Query:    49 AKHAVSEGTKAVTKYTSSNDTLSVL--VLP---INIKAMSIMNSFVNDIFERIAAESSRL 103
             A+ ++++G K   K + S     VL  V P   I+ KAMSIMNSFVNDIFERIAAE+SRL
Sbjct:    12 AQKSITKGDKKKRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRL 71

Query:   104 AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 148
             AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    72 AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 116

GO:0005811 "lipid particle" evidence=ISS

GO:0042742 "defense response to bacterium" evidence=IDA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISS

FB|FBgn0061209 His2B:CG17949 "His2B:CG17949" [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query:    77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
             I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct:    52 ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query:   137 GTKAVTKYTSSK 148
             GTKAVTKYTSSK
Sbjct:   112 GTKAVTKYTSSK 123

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

FB|FBgn0053868 His2B:CG33868 "His2B:CG33868" [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query:    77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
             I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct:    52 ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query:   137 GTKAVTKYTSSK 148
             GTKAVTKYTSSK
Sbjct:   112 GTKAVTKYTSSK 123

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

FB|FBgn0053870 His2B:CG33870 "His2B:CG33870" [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query:    77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
             I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct:    52 ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query:   137 GTKAVTKYTSSK 148
             GTKAVTKYTSSK
Sbjct:   112 GTKAVTKYTSSK 123

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

FB|FBgn0053872 His2B:CG33872 "His2B:CG33872" [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query:    77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
             I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct:    52 ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query:   137 GTKAVTKYTSSK 148
             GTKAVTKYTSSK
Sbjct:   112 GTKAVTKYTSSK 123

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

FB|FBgn0053874 His2B:CG33874 "His2B:CG33874" [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query:    77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
             I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct:    52 ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query:   137 GTKAVTKYTSSK 148
             GTKAVTKYTSSK
Sbjct:   112 GTKAVTKYTSSK 123

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

FB|FBgn0053876 His2B:CG33876 "His2B:CG33876" [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query:    77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
             I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct:    52 ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query:   137 GTKAVTKYTSSK 148
             GTKAVTKYTSSK
Sbjct:   112 GTKAVTKYTSSK 123

GO:0005634 "nucleus" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

FB|FBgn0053878 His2B:CG33878 "His2B:CG33878" [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query:    77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
             I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct:    52 ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query:   137 GTKAVTKYTSSK 148
             GTKAVTKYTSSK
Sbjct:   112 GTKAVTKYTSSK 123

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

FB|FBgn0053880 His2B:CG33880 "His2B:CG33880" [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query:    77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
             I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct:    52 ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query:   137 GTKAVTKYTSSK 148
             GTKAVTKYTSSK
Sbjct:   112 GTKAVTKYTSSK 123

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

FB|FBgn0053882 His2B:CG33882 "His2B:CG33882" [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query:    77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
             I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct:    52 ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111

Query:   137 GTKAVTKYTSSK 148
             GTKAVTKYTSSK
Sbjct:   112 GTKAVTKYTSSK 123

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P58876	H2B1D_HUMAN	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q76FE5	H2B_DROMA	No assigned EC number	0.9583	0.4864	0.5853	N/A	N/A
P62808	H2B1_BOVIN	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q5R893	H2B1_PONAB	No assigned EC number	0.9305	0.4864	0.5714	no	N/A
Q76FE9	H2B_DROOR	No assigned EC number	0.9583	0.4864	0.5853	N/A	N/A
Q8I1N0	H2B_DROYA	No assigned EC number	0.9583	0.4864	0.5853	N/A	N/A
P33778	H2B1B_HUMAN	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q9PSW9	H2B8_CHICK	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
P02284	H2B_PATGR	No assigned EC number	0.9444	0.4864	0.5901	N/A	N/A
P35068	H2B1_TIGCA	No assigned EC number	0.9444	0.4864	0.5853	N/A	N/A
P35069	H2B3_TIGCA	No assigned EC number	0.9444	0.4864	0.5853	N/A	N/A
P30757	H2B_SIPNU	No assigned EC number	0.9444	0.4864	0.5853	N/A	N/A
P62807	H2B1C_HUMAN	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
P69070	H2B_SALTR	No assigned EC number	0.9444	0.4864	0.5806	N/A	N/A
Q6ZWY9	H2B1C_MOUSE	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q64525	H2B2B_MOUSE	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
P59782	H2B_DROSI	No assigned EC number	0.9583	0.4864	0.5853	N/A	N/A
P59781	H2B_DROER	No assigned EC number	0.9583	0.4864	0.5853	N/A	N/A
Q99879	H2B1M_HUMAN	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q8N257	H2B3B_HUMAN	No assigned EC number	0.9166	0.4864	0.5714	yes	N/A
Q8CGP2	H2B1P_MOUSE	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q8CGP0	H2B3B_MOUSE	No assigned EC number	0.9166	0.4864	0.5714	yes	N/A
P10854	H2B1M_MOUSE	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q6PC60	H2B3_DANRE	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q5RCP8	H2B2E_PONAB	No assigned EC number	0.9305	0.4864	0.5714	no	N/A
P02283	H2B_DROME	No assigned EC number	0.9583	0.4864	0.5853	yes	N/A
Q16778	H2B2E_HUMAN	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
P21897	H2B_CHITH	No assigned EC number	0.9444	0.4864	0.576	N/A	N/A
Q5BJA5	H2B1_DANRE	No assigned EC number	0.9305	0.4864	0.5806	no	N/A
P17271	H2B_DROHY	No assigned EC number	0.9583	0.4864	0.5853	N/A	N/A
Q99877	H2B1N_HUMAN	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
P02281	H2B11_XENLA	No assigned EC number	0.9166	0.4864	0.5714	N/A	N/A
Q76FD7	H2B_DROSE	No assigned EC number	0.9583	0.4864	0.5853	N/A	N/A
P10853	H2B1F_MOUSE	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q76FF3	H2B_DROTE	No assigned EC number	0.9583	0.4864	0.5853	N/A	N/A
P69069	H2B_ONCMY	No assigned EC number	0.9444	0.4864	0.5806	N/A	N/A
P19374	H2B_PLADU	No assigned EC number	0.9583	0.4864	0.5853	N/A	N/A
P0C1H5	H2B7_CHICK	No assigned EC number	0.9444	0.4864	0.5714	yes	N/A
P23527	H2B1O_HUMAN	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q64478	H2B1H_MOUSE	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q75VN4	H2B_RHASC	No assigned EC number	0.9305	0.4864	0.5714	N/A	N/A
Q64475	H2B1B_MOUSE	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q9D2U9	H2B3A_MOUSE	No assigned EC number	0.9166	0.4864	0.5714	yes	N/A
Q27442	H2B_ANOGA	No assigned EC number	0.9583	0.4864	0.5806	yes	N/A
P83863	H2B_LITVA	No assigned EC number	0.9583	0.4864	0.6206	N/A	N/A
Q99880	H2B1L_HUMAN	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
P0C1H4	H2B5_CHICK	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q93079	H2B1H_HUMAN	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
Q5QNW6	H2B2F_HUMAN	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A
P0C1H3	H2B1_CHICK	No assigned EC number	0.9305	0.4864	0.5714	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	148
smart00427	97	smart00427, H2B, Histone H2B	5e-36
smart00427	97	smart00427, H2B, Histone H2B	1e-34
PLN00158	116	PLN00158, PLN00158, histone H2B; Provisional	6e-33
PLN00158	116	PLN00158, PLN00158, histone H2B; Provisional	2e-31
PTZ00463	117	PTZ00463, PTZ00463, histone H2B; Provisional	5e-25
PTZ00463	117	PTZ00463, PTZ00463, histone H2B; Provisional	5e-24
pfam00125	75	pfam00125, Histone, Core histone H2A/H2B/H3/H4	3e-14
pfam00125	75	pfam00125, Histone, Core histone H2A/H2B/H3/H4	8e-13

>gnl|CDD|197718 smart00427, H2B, Histone H2B

 Score =  119 bits (300), Expect = 5e-36
 Identities = 58/70 (82%), Positives = 67/70 (95%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ +AMSIMNSFVNDIFERIAAE+S+LA YNK+ST++SREIQTAVRL+LPGELAKHAVSE
Sbjct: 28  ISSRAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSE 87

Query: 137 GTKAVTKYTS 146
           GTKAVTK +S
Sbjct: 88  GTKAVTKASS 97

Length = 97

>gnl|CDD|197718 smart00427, H2B, Histone H2B

 Score =  115 bits (290), Expect = 1e-34
 Identities = 56/65 (86%), Positives = 63/65 (96%)

Query: 1  MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
          MSIMNSFVNDIFERIAAE+S+LA YNK+ST++SREIQTAVRL+LPGELAKHAVSEGTKAV
Sbjct: 33 MSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSEGTKAV 92

Query: 61 TKYTS 65
          TK +S
Sbjct: 93 TKASS 97

Length = 97

>gnl|CDD|215081 PLN00158, PLN00158, histone H2B; Provisional

 Score =  112 bits (281), Expect = 6e-33
 Identities = 56/71 (78%), Positives = 66/71 (92%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSF+NDIFE+IA E+ +LA YNK+ T+TSREIQTAVRL+LPGELAKHAVSE
Sbjct: 46  ISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLILPGELAKHAVSE 105

Query: 137 GTKAVTKYTSS 147
           GTKAVTK+TS+
Sbjct: 106 GTKAVTKFTSA 116

Length = 116

>gnl|CDD|215081 PLN00158, PLN00158, histone H2B; Provisional

 Score =  108 bits (271), Expect = 2e-31
 Identities = 53/66 (80%), Positives = 62/66 (93%)

Query: 1   MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
           MSIMNSF+NDIFE+IA E+ +LA YNK+ T+TSREIQTAVRL+LPGELAKHAVSEGTKAV
Sbjct: 51  MSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLILPGELAKHAVSEGTKAV 110

Query: 61  TKYTSS 66
           TK+TS+
Sbjct: 111 TKFTSA 116

Length = 116

>gnl|CDD|185642 PTZ00463, PTZ00463, histone H2B; Provisional

 Score = 92.2 bits (228), Expect = 5e-25
 Identities = 50/70 (71%), Positives = 62/70 (88%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ K+M+IMNSF+ D FE+IA E+SRL  Y +R T++SREIQTA+RL+LPGELAKHAVSE
Sbjct: 47  ISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGELAKHAVSE 106

Query: 137 GTKAVTKYTS 146
           GTKAVTK+TS
Sbjct: 107 GTKAVTKFTS 116

Length = 117

>gnl|CDD|185642 PTZ00463, PTZ00463, histone H2B; Provisional

 Score = 89.5 bits (221), Expect = 5e-24
 Identities = 48/65 (73%), Positives = 58/65 (89%)

Query: 1   MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
           M+IMNSF+ D FE+IA E+SRL  Y +R T++SREIQTA+RL+LPGELAKHAVSEGTKAV
Sbjct: 52  MNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGELAKHAVSEGTKAV 111

Query: 61  TKYTS 65
           TK+TS
Sbjct: 112 TKFTS 116

Length = 117

>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4

 Score = 63.0 bits (154), Expect = 3e-14
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124
           I+ KA   +   + D+ E I  ++  LA + KR TIT R+IQ AVRL 
Sbjct: 28  ISSKAPVALQEALEDLLEEILEDAGLLARHAKRKTITPRDIQLAVRLD 75

Length = 75

>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4

 Score = 59.5 bits (145), Expect = 8e-13
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 1  MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 43
             +   + D+ E I  ++  LA + KR TIT R+IQ AVRL 
Sbjct: 33 PVALQEALEDLLEEILEDAGLLARHAKRKTITPRDIQLAVRLD 75

Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
smart00427	89	H2B Histone H2B.	100.0
PLN00158	116	histone H2B; Provisional	100.0
PTZ00463	117	histone H2B; Provisional	100.0
KOG1744|consensus	127		100.0
smart00427	89	H2B Histone H2B.	100.0
PLN00158	116	histone H2B; Provisional	99.98
PTZ00463	117	histone H2B; Provisional	99.98
KOG1744|consensus	127		99.96
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	99.15
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	98.69
cd00074	115	H2A Histone 2A; H2A is a subunit of the nucleosome	97.46
cd07981	72	TAF12 TATA Binding Protein (TBP) Associated Factor	97.35
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	97.35
PF00808	65	CBFD_NFYB_HMF: Histone-like transcription factor (	97.16
smart00803	65	TAF TATA box binding protein associated factor. TA	97.13
PLN00035	103	histone H4; Provisional	97.04
cd00076	85	H4 Histone H4, one of the four histones, along wit	97.01
PTZ00015	102	histone H4; Provisional	97.0
cd07981	72	TAF12 TATA Binding Protein (TBP) Associated Factor	96.63
PLN00153	129	histone H2A; Provisional	96.55
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	96.48
PLN00156	139	histone H2AX; Provisional	96.41
PTZ00017	134	histone H2A; Provisional	96.34
PLN00157	132	histone H2A; Provisional	96.34
smart00417	74	H4 Histone H4.	96.22
cd07979	117	TAF9 TATA Binding Protein (TBP) Associated Factor	95.98
COG5262	132	HTA1 Histone H2A [Chromatin structure and dynamics	95.88
PLN00035	103	histone H4; Provisional	95.83
smart00803	65	TAF TATA box binding protein associated factor. TA	95.81
smart00414	106	H2A Histone 2A.	95.81
PTZ00015	102	histone H4; Provisional	95.74
cd00076	85	H4 Histone H4, one of the four histones, along wit	95.72
smart00428	105	H3 Histone H3.	95.64
PLN00154	136	histone H2A; Provisional	95.62
PF00808	65	CBFD_NFYB_HMF: Histone-like transcription factor (	95.42
PF02969	66	TAF: TATA box binding protein associated factor (T	95.34
PTZ00252	134	histone H2A; Provisional	95.17
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	94.97
cd00074	115	H2A Histone 2A; H2A is a subunit of the nucleosome	94.77
KOG1756|consensus	131		94.76
cd07979	117	TAF9 TATA Binding Protein (TBP) Associated Factor	94.54
PF03847	68	TFIID_20kDa: Transcription initiation factor TFIID	94.47
smart00417	74	H4 Histone H4.	93.86
PF02969	66	TAF: TATA box binding protein associated factor (T	93.33
PF03847	68	TFIID_20kDa: Transcription initiation factor TFIID	93.19
smart00576	77	BTP Bromodomain transcription factors and PHD doma	92.95
smart00428	105	H3 Histone H3.	92.14
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	91.64
KOG0869|consensus	168		91.38
PTZ00252	134	histone H2A; Provisional	90.99
PLN00154	136	histone H2A; Provisional	90.57
smart00414	106	H2A Histone 2A.	88.72
PTZ00017	134	histone H2A; Provisional	88.23
PLN00153	129	histone H2A; Provisional	88.22
PLN00157	132	histone H2A; Provisional	87.77
PLN00156	139	histone H2AX; Provisional	87.49
PF15630	76	CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C	87.05
KOG1756|consensus	131		85.36
KOG1142|consensus	258		84.49
PLN00160	97	histone H3; Provisional	84.33
PLN00160	97	histone H3; Provisional	84.04
KOG1142|consensus	258		83.77
PLN00121	136	histone H3; Provisional	83.57
PTZ00018	136	histone H3; Provisional	82.57
KOG0871|consensus	156		82.41
PF07524	77	Bromo_TP: Bromodomain associated; InterPro: IPR006	82.39
PF02269	93	TFIID-18kDa: Transcription initiation factor IID,	81.62
smart00576	77	BTP Bromodomain transcription factors and PHD doma	81.43
PLN00161	135	histone H3; Provisional	81.11
PF15511	414	CENP-T: Centromere kinetochore component CENP-T; P	80.65
KOG0869|consensus	168		80.49
PLN00161	135	histone H3; Provisional	80.25
KOG2549|consensus	576		80.19

>smart00427 H2B Histone H2B

Probab=100.00  E-value=5.9e-43  Score=251.15  Aligned_cols=83  Identities=77%  Similarity=0.981  Sum_probs=80.0

Q ss_pred             ccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhhhh
Q psy17766         64 TSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGT  138 (148)
Q Consensus        64 ~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~eg~  138 (148)
                      +++.||||||  |   +|||++||+|||||+||||||||.||++|+++|||+|||+||||+||||+|||||+|||++||+
T Consensus         2 sy~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLakhAvsEgt   81 (89)
T smart00427        2 TYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSEGT   81 (89)
T ss_pred             cHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            3567999999  6   9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccc
Q psy17766        139 KAVTKYTS  146 (148)
Q Consensus       139 kav~~~~~  146 (148)
                      |||+||++
T Consensus        82 kAv~k~~~   89 (89)
T smart00427       82 KAVTKYSS   89 (89)
T ss_pred             HHHHhhcC
Confidence            99999975

>PLN00158 histone H2B; Provisional

Probab=100.00  E-value=1.8e-42  Score=258.50  Aligned_cols=86  Identities=70%  Similarity=0.906  Sum_probs=82.7

Q ss_pred             ccccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhh
Q psy17766         62 KYTSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE  136 (148)
Q Consensus        62 k~~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~e  136 (148)
                      +.+++.||||||  |   +|||++||+||||||||||||||.||++|++||+|+|||+||||+||||+|||||+||||+|
T Consensus        26 ~esy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLvLpgELaKhAvsE  105 (116)
T PLN00158         26 TETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLILPGELAKHAVSE  105 (116)
T ss_pred             cccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHhccHHHHHHHHHH
Confidence            456778999999  6   99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccccC
Q psy17766        137 GTKAVTKYTSS  147 (148)
Q Consensus       137 g~kav~~~~~~  147 (148)
                      |+|||++|+++
T Consensus       106 GtkAv~k~~~~  116 (116)
T PLN00158        106 GTKAVTKFTSA  116 (116)
T ss_pred             HHHHHHHhhcC
Confidence            99999999875

>PTZ00463 histone H2B; Provisional

Probab=100.00  E-value=3.8e-42  Score=256.75  Aligned_cols=85  Identities=62%  Similarity=0.839  Sum_probs=81.5

Q ss_pred             ccccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhh
Q psy17766         62 KYTSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE  136 (148)
Q Consensus        62 k~~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~e  136 (148)
                      +-+++.||||||  |   +|||++||+||||||||||||||.||++|++||+|+|||+|||||||||+|||||+||||+|
T Consensus        27 ~esy~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLlLpGELaKhAvsE  106 (117)
T PTZ00463         27 YDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGELAKHAVSE  106 (117)
T ss_pred             cchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhcccHHHHHhhhhH
Confidence            345678999999  6   99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccc
Q psy17766        137 GTKAVTKYTS  146 (148)
Q Consensus       137 g~kav~~~~~  146 (148)
                      |+|||++|++
T Consensus       107 GtkAv~k~~~  116 (117)
T PTZ00463        107 GTKAVTKFTS  116 (117)
T ss_pred             HHHHHHHhhc
Confidence            9999999986

>KOG1744|consensus

Probab=100.00  E-value=8.2e-37  Score=231.13  Aligned_cols=85  Identities=81%  Similarity=1.044  Sum_probs=81.7

Q ss_pred             ccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhhhh
Q psy17766         64 TSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGT  138 (148)
Q Consensus        64 ~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~eg~  138 (148)
                      ..+.|+||||  |   +|||+++|+|||||+|||||+||.||++|++|+||+||++||||+||||+|||||+|||++||+
T Consensus        38 ~~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLllPgel~khA~seGt  117 (127)
T KOG1744|consen   38 SYSEYVYKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLLLPGELAKHAVSEGT  117 (127)
T ss_pred             ceeeehhhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHhCchHHhhhhhcccc
Confidence            3467899999  5   9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccCC
Q psy17766        139 KAVTKYTSSK  148 (148)
Q Consensus       139 kav~~~~~~k  148 (148)
                      |||++|+++|
T Consensus       118 kav~ky~~sk  127 (127)
T KOG1744|consen  118 KAVTKYTSSK  127 (127)
T ss_pred             hhheeeccCC
Confidence            9999999886

>smart00427 H2B Histone H2B

Probab=100.00  E-value=2.1e-34  Score=206.97  Aligned_cols=65  Identities=88%  Similarity=1.189  Sum_probs=63.6

Q ss_pred             CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcccccccccccccccccccc
Q psy17766          1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS   65 (148)
Q Consensus         1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~s   65 (148)
                      |+|||||+||||||||.||++|++|+||+|||+||||+||||+|||||+|||++||+|||+||++
T Consensus        25 m~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLakhAvsEgtkAv~k~~~   89 (89)
T smart00427       25 MSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSEGTKAVTKYSS   89 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhcC
Confidence            78999999999999999999999999999999999999999999999999999999999999974

>PLN00158 histone H2B; Provisional

Probab=99.98  E-value=6.6e-34  Score=212.47  Aligned_cols=66  Identities=80%  Similarity=1.136  Sum_probs=64.5

Q ss_pred             CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccC
Q psy17766          1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS   66 (148)
Q Consensus         1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sS   66 (148)
                      |+||||||||||||||.||++|++||+|+|||+||||+||||+|||||+|||++||++||++|+++
T Consensus        51 M~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLvLpgELaKhAvsEGtkAv~k~~~~  116 (116)
T PLN00158         51 MSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLILPGELAKHAVSEGTKAVTKFTSA  116 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Confidence            789999999999999999999999999999999999999999999999999999999999999875

>PTZ00463 histone H2B; Provisional

Probab=99.98  E-value=9.6e-34  Score=211.64  Aligned_cols=65  Identities=74%  Similarity=1.068  Sum_probs=63.8

Q ss_pred             CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcccccccccccccccccccc
Q psy17766          1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS   65 (148)
Q Consensus         1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~s   65 (148)
                      |+||||||||||||||.||++|++|++|+|||+||||+||||+|||||+|||++||++||++|++
T Consensus        52 M~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLlLpGELaKhAvsEGtkAv~k~~~  116 (117)
T PTZ00463         52 MNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGELAKHAVSEGTKAVTKFTS  116 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhcccHHHHHhhhhHHHHHHHHhhc
Confidence            78999999999999999999999999999999999999999999999999999999999999975

>KOG1744|consensus

Probab=99.96  E-value=5.1e-30  Score=194.16  Aligned_cols=67  Identities=90%  Similarity=1.203  Sum_probs=65.0

Q ss_pred             CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccCC
Q psy17766          1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSN   67 (148)
Q Consensus         1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sSk   67 (148)
                      |+|||||+||||||||.||++|++|+||+||++||||+||||+|||||+|||++||++||++|++++
T Consensus        61 ~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLllPgel~khA~seGtkav~ky~~sk  127 (127)
T KOG1744|consen   61 MGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK  127 (127)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHhCchHHhhhhhcccchhheeeccCC
Confidence            6899999999999999999999999999999999999999999999999999999999999998763

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=99.15  E-value=6.3e-11  Score=80.51  Aligned_cols=49  Identities=37%  Similarity=0.491  Sum_probs=47.7

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      .+||++||.+|+++++|++++|.++|..+++++||.||+++|||.|+|+
T Consensus        26 ~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~   74 (75)
T PF00125_consen   26 YRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI   74 (75)
T ss_dssp             SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred             cccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence            4899999999999999999999999999999999999999999999986

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=98.69  E-value=1.9e-08  Score=68.20  Aligned_cols=42  Identities=38%  Similarity=0.526  Sum_probs=40.0

Q ss_pred             CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      |.+|++++.|++++|.++|..++.++||.||+++|||.|+|+
T Consensus        33 ~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~   74 (75)
T PF00125_consen   33 LVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI   74 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence            457999999999999999999999999999999999999986

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome

Probab=97.46  E-value=0.00013  Score=54.79  Aligned_cols=55  Identities=22%  Similarity=0.213  Sum_probs=50.4

Q ss_pred             Ccccee---e--eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         68 DTLSVL---V--LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        68 yi~kvL---v--~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      .|+|.|   .  ..||..|...|-..+.++...|.+.|.+.++.+++.+||+|+|+.|++
T Consensus        25 ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~   84 (115)
T cd00074          25 RIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVR   84 (115)
T ss_pred             HHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHh
Confidence            356666   1  789999999999999999999999999999999999999999999998

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=97.35  E-value=0.00058  Score=46.88  Aligned_cols=49  Identities=14%  Similarity=0.316  Sum_probs=46.2

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..++..+...|-.+.+|+.+.++.+|..+|...++.|+..+|||.+++-
T Consensus        18 ~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r   66 (72)
T cd07981          18 EQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER   66 (72)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999998763

The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=97.35  E-value=0.00047  Score=49.98  Aligned_cols=53  Identities=23%  Similarity=0.325  Sum_probs=49.7

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCch
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG  127 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpg  127 (148)
                      -.+|..|..-|+..+..+++.|+++|..+|...||.|+++.||+.|.+.+-++
T Consensus        35 ~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~   87 (91)
T COG2036          35 ERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR   87 (91)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence            57899999999999999999999999999999999999999999999977653

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin

Probab=97.16  E-value=0.001  Score=44.19  Aligned_cols=47  Identities=23%  Similarity=0.417  Sum_probs=43.2

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV  121 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAv  121 (148)
                      ..+|+.|...+......+.+.|+.+|...+..++|+||+++||..|+
T Consensus        19 ~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av   65 (65)
T PF00808_consen   19 MRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV   65 (65)
T ss_dssp             SEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence            56999999999999999999999999999999999999999999986

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....

>smart00803 TAF TATA box binding protein associated factor

Probab=97.13  E-value=0.00096  Score=45.25  Aligned_cols=48  Identities=23%  Similarity=0.325  Sum_probs=44.9

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..||..+..-+-..+.+..+.|+.+|..+++..||+|+|..||..|.|
T Consensus        18 ~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk   65 (65)
T smart00803       18 GNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR   65 (65)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence            578999999999999999999999999999999999999999988864

TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.

>PLN00035 histone H4; Provisional

Probab=97.04  E-value=0.0015  Score=48.35  Aligned_cols=50  Identities=14%  Similarity=0.175  Sum_probs=47.3

Q ss_pred             eeccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         74 VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        74 v~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      |..||..+..-+...++++++.|+.+|..++.+.+|+|++..||..|++.
T Consensus        44 vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr   93 (103)
T PLN00035         44 VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR   93 (103)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence            38899999999999999999999999999999999999999999999874

>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution

Probab=97.01  E-value=0.0018  Score=46.32  Aligned_cols=49  Identities=16%  Similarity=0.244  Sum_probs=46.3

Q ss_pred             eeccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         74 VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        74 v~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      |..||..+..-+...++.+++.|+.+|..++.+.+|.|+++.||..|++
T Consensus        28 vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alk   76 (85)
T cd00076          28 VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALK   76 (85)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence            3789999999999999999999999999999999999999999998886

>PTZ00015 histone H4; Provisional

Probab=97.00  E-value=0.0017  Score=47.96  Aligned_cols=50  Identities=18%  Similarity=0.324  Sum_probs=47.1

Q ss_pred             eeccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         74 VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        74 v~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      |..||..+..-+...++++++.|+.+|..++.+.+|.|+++.||..|++.
T Consensus        45 vkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr   94 (102)
T PTZ00015         45 VKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKR   94 (102)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence            48899999999999999999999999999999999999999999988763

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=96.63  E-value=0.0053  Score=42.09  Aligned_cols=40  Identities=18%  Similarity=0.401  Sum_probs=35.6

Q ss_pred             hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      .+-.+..|+.+.++.+|..||++.++.|+..+|||-+++-
T Consensus        27 ~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r   66 (72)
T cd07981          27 LLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER   66 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            3556778888999999999999999999999999999874

The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind

>PLN00153 histone H2A; Provisional

Probab=96.55  E-value=0.0025  Score=48.99  Aligned_cols=70  Identities=24%  Similarity=0.252  Sum_probs=56.3

Q ss_pred             ccccccccccccccCCCccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         52 AVSEGTKAVTKYTSSNDTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        52 Av~eG~kav~k~~sSkyi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      +.+.-.+|--.|+-+ .|+|.|.     ..|+..|..+|-..+.++..+|.+.|.+-++.+++.-|+||+||.|++
T Consensus        14 ~~srS~ragL~FpVg-Ri~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~   88 (129)
T PLN00153         14 AVSRSAKAGLQFPVG-RIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIR   88 (129)
T ss_pred             ccCcccccCcccchH-HHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhcc
Confidence            344444444344322 4667661     789999999999999999999999999999999999999999999998

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=96.48  E-value=0.0072  Score=43.85  Aligned_cols=44  Identities=25%  Similarity=0.363  Sum_probs=39.1

Q ss_pred             hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCc
Q psy17766          3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG   46 (148)
Q Consensus         3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpg   46 (148)
                      .|+..+..+++.|+.+|..+|.+.||.|++++||+.|.+.+-++
T Consensus        44 ~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~   87 (91)
T COG2036          44 ELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR   87 (91)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence            35677888899999999999999999999999999999987654

>PLN00156 histone H2AX; Provisional

Probab=96.41  E-value=0.0028  Score=49.26  Aligned_cols=55  Identities=22%  Similarity=0.230  Sum_probs=50.3

Q ss_pred             Cccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         68 DTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        68 yi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      .|+|.|.     ..|+..|..+|-..+.++..+|.+.|.+-++.+++.-|+||+||.|++
T Consensus        34 Ri~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIr   93 (139)
T PLN00156         34 RIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR   93 (139)
T ss_pred             HHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhcc
Confidence            4566661     789999999999999999999999999999999999999999999998

>PTZ00017 histone H2A; Provisional

Probab=96.34  E-value=0.0029  Score=48.86  Aligned_cols=55  Identities=22%  Similarity=0.228  Sum_probs=50.1

Q ss_pred             Cccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         68 DTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        68 yi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      .|+|.|.     ..|+..|..+|-..+.++...|.+-|.+-++.+++.-||||+||.|++
T Consensus        32 Ri~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~   91 (134)
T PTZ00017         32 RVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIR   91 (134)
T ss_pred             HHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhcc
Confidence            3566661     789999999999999999999999999999999999999999999998

>PLN00157 histone H2A; Provisional

Probab=96.34  E-value=0.0031  Score=48.64  Aligned_cols=55  Identities=24%  Similarity=0.233  Sum_probs=50.4

Q ss_pred             Cccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         68 DTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        68 yi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      .|++.|.     ..|+..|..+|-..+.++..+|.+.|.+-++.+++.-|+||+||.|++
T Consensus        31 Ri~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~   90 (132)
T PLN00157         31 RIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVR   90 (132)
T ss_pred             HHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhccc
Confidence            4566661     789999999999999999999999999999999999999999999998

>smart00417 H4 Histone H4

Probab=96.22  E-value=0.0057  Score=42.77  Aligned_cols=45  Identities=11%  Similarity=0.179  Sum_probs=42.1

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQT  119 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqt  119 (148)
                      ..||..+..-+..+++++++.|+.+|..++.+.+|.|+++.||-.
T Consensus        29 kRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~   73 (74)
T smart00417       29 KRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY   73 (74)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence            689999999999999999999999999999999999999999853

>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=95.98  E-value=0.0098  Score=44.54  Aligned_cols=52  Identities=6%  Similarity=0.146  Sum_probs=48.9

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCc
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP  126 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lp  126 (148)
                      ...+.++..-|.-|+....+.|+.+|..++++.+|.|++..||..|+...+.
T Consensus        17 ~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~   68 (117)
T cd07979          17 TEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD   68 (117)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence            5678999999999999999999999999999999999999999999998775

The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi

>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]

Probab=95.88  E-value=0.013  Score=44.81  Aligned_cols=54  Identities=24%  Similarity=0.271  Sum_probs=49.4

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA  130 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLa  130 (148)
                      +.|+++|-..+...+.++..+|.+-|.+-|+.+|+..|+||++|-|+|  =..||-
T Consensus        43 ~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIr--nD~EL~   96 (132)
T COG5262          43 MRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIR--NDEELN   96 (132)
T ss_pred             eeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhc--CcHHHH
Confidence            899999999999999999999999999999999999999999999998  334443

>PLN00035 histone H4; Provisional

Probab=95.83  E-value=0.022  Score=42.27  Aligned_cols=39  Identities=13%  Similarity=0.265  Sum_probs=35.5

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      +...+.+.++.|+.+|..++.+.+|+|++..||..|++.
T Consensus        55 lr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr   93 (103)
T PLN00035         55 TRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR   93 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence            456778899999999999999999999999999999875

>smart00803 TAF TATA box binding protein associated factor

Probab=95.81  E-value=0.017  Score=39.08  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766          6 SFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR   41 (148)
Q Consensus         6 sfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr   41 (148)
                      ..+....+.|+.+|..++++.||+|+|..||..|.|
T Consensus        30 ~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk   65 (65)
T smart00803       30 EDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR   65 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence            345566788999999999999999999999988864

TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.

>smart00414 H2A Histone 2A

Probab=95.81  E-value=0.012  Score=43.55  Aligned_cols=48  Identities=21%  Similarity=0.259  Sum_probs=45.7

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..|++.|..+|-..+.++...|.+-|.+-++.+++..||+|+||.|++
T Consensus        26 ~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~   73 (106)
T smart00414       26 KRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIR   73 (106)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhcc
Confidence            688999999999999999999999999999999999999999999998

>PTZ00015 histone H4; Provisional

Probab=95.74  E-value=0.025  Score=41.85  Aligned_cols=39  Identities=18%  Similarity=0.434  Sum_probs=35.1

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      +...+.+.++.|+.+|..++.+.+|+|++..||..|++.
T Consensus        56 ~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr   94 (102)
T PTZ00015         56 VRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKR   94 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence            445678889999999999999999999999999999874

>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution

Probab=95.72  E-value=0.028  Score=40.22  Aligned_cols=39  Identities=15%  Similarity=0.309  Sum_probs=34.9

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      +...+...++.|+.+|..++.+.+|+|++..||..|++.
T Consensus        39 ~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr   77 (85)
T cd00076          39 VRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR   77 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence            345677899999999999999999999999999999874

>smart00428 H3 Histone H3

Probab=95.64  E-value=0.03  Score=41.55  Aligned_cols=50  Identities=24%  Similarity=0.276  Sum_probs=46.5

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      ..+++.|+.-|.....+..-.+.++|..++.+.||.||.++|||.|.|+-
T Consensus        52 ~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~rir  101 (105)
T smart00428       52 LRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIR  101 (105)
T ss_pred             ceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHHh
Confidence            46889999999999999999999999999999999999999999998853

>PLN00154 histone H2A; Provisional

Probab=95.62  E-value=0.016  Score=44.99  Aligned_cols=48  Identities=17%  Similarity=0.160  Sum_probs=45.5

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..|++.|..+|-..+.++.-+|.+-|.+-++.+++.-||||+||.|+|
T Consensus        56 ~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr  103 (136)
T PLN00154         56 GRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR  103 (136)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence            489999999999999999999999999999999999999999999998

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin

Probab=95.42  E-value=0.038  Score=36.52  Aligned_cols=37  Identities=27%  Similarity=0.453  Sum_probs=31.8

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHH
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV   40 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAv   40 (148)
                      ++.....+.+.|+.+|...+..++|+||+.+||..|+
T Consensus        29 i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av   65 (65)
T PF00808_consen   29 IAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV   65 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence            4555667789999999999999999999999999986

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....

>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex

Probab=95.34  E-value=0.055  Score=37.00  Aligned_cols=48  Identities=21%  Similarity=0.292  Sum_probs=37.4

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..++..+-..|-.=+.+-+..|..||.+.++..||.+||+.||..|.|
T Consensus        19 ~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr   66 (66)
T PF02969_consen   19 SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR   66 (66)
T ss_dssp             --B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence            345667777777778888899999999999999999999999999976

TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.

>PTZ00252 histone H2A; Provisional

Probab=95.17  E-value=0.028  Score=43.50  Aligned_cols=55  Identities=22%  Similarity=0.202  Sum_probs=48.0

Q ss_pred             Cccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhc--cCCCccChHHHHHHHH
Q psy17766         68 DTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHY--NKRSTITSREIQTAVR  122 (148)
Q Consensus        68 yi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~--~kr~Tlt~reIqtAvr  122 (148)
                      .|+|.|.     ..|+..|..+|-..+.++..+|.+.|.+-++.  +|+.-|+||+||.|||
T Consensus        30 Ri~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIr   91 (134)
T PTZ00252         30 RVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVR   91 (134)
T ss_pred             HHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhcc
Confidence            3566661     78999999999999999999999999999854  8999999999999998

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.97  E-value=0.054  Score=46.92  Aligned_cols=50  Identities=18%  Similarity=0.291  Sum_probs=46.7

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      ..+|..|...+..-+.+....|+.||.++++..||+||+..||..|++..
T Consensus        15 ~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~   64 (343)
T cd08050          15 DSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLR   64 (343)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHh
Confidence            46788999999999999999999999999999999999999999999863

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome

Probab=94.77  E-value=0.061  Score=40.42  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      .+..+...|.+.|.+.++.+++.+|++++|+.|++-
T Consensus        50 vLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~n   85 (115)
T cd00074          50 VLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRN   85 (115)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhc
Confidence            344455566667778889999999999999999985

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.

>KOG1756|consensus

Probab=94.76  E-value=0.026  Score=43.40  Aligned_cols=48  Identities=23%  Similarity=0.281  Sum_probs=44.7

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..||.-|-..|-..+.++--.|.+-|.+-++.|+|.-++||+||-|++
T Consensus        44 ~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~   91 (131)
T KOG1756|consen   44 QRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIR   91 (131)
T ss_pred             hhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHh
Confidence            788899999899888888889999999999999999999999999998

>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.54  E-value=0.11  Score=38.89  Aligned_cols=46  Identities=7%  Similarity=0.156  Sum_probs=39.9

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcccc
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA   49 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLa   49 (148)
                      +.-|+....+.|+.+|..++++.+|+||+..||..|+...+.+...
T Consensus        27 Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~~~f~   72 (117)
T cd07979          27 LLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVDYSFT   72 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCC
Confidence            5567888888999999999999999999999999999987764443

The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi

>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []

Probab=94.47  E-value=0.11  Score=35.63  Aligned_cols=48  Identities=17%  Similarity=0.315  Sum_probs=39.1

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..+...+-..|-.+.+|+.+.+...|++||++.+..||..+|||....
T Consensus        16 ~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le   63 (68)
T PF03847_consen   16 EKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE   63 (68)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            567888899999999999999999999999999999999999997654

; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.

>smart00417 H4 Histone H4

Probab=93.86  E-value=0.073  Score=37.21  Aligned_cols=35  Identities=11%  Similarity=0.304  Sum_probs=30.8

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHH
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQT   38 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqt   38 (148)
                      +..++.++++.|+.+|..++.+.+|+|++..||..
T Consensus        39 lr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~   73 (74)
T smart00417       39 TRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY   73 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence            34577888999999999999999999999999853

>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex

Probab=93.33  E-value=0.19  Score=34.33  Aligned_cols=30  Identities=27%  Similarity=0.506  Sum_probs=24.6

Q ss_pred             HHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766         12 FERIAAESSRLAHYNKRSTITSREIQTAVR   41 (148)
Q Consensus        12 feria~Ea~~L~~~~kk~Tlt~reiqtAvr   41 (148)
                      ...|..||.+.+++.||.+||+.||..|.|
T Consensus        37 lreiiq~a~kfm~hskR~~Lt~~Di~~ALr   66 (66)
T PF02969_consen   37 LREIIQEALKFMRHSKRTKLTTDDINSALR   66 (66)
T ss_dssp             HHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence            456789999999999999999999999976

TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.

>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []

Probab=93.19  E-value=0.21  Score=34.18  Aligned_cols=39  Identities=21%  Similarity=0.406  Sum_probs=31.0

Q ss_pred             hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766          3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR   41 (148)
Q Consensus         3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr   41 (148)
                      ++-.+..|+.+.+...|++||++.+..||..+|||....
T Consensus        25 ~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le   63 (68)
T PF03847_consen   25 LLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE   63 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            345667777788889999999999999999999998654

; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.

>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins

Probab=92.95  E-value=0.37  Score=33.09  Aligned_cols=48  Identities=8%  Similarity=0.167  Sum_probs=44.0

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      -+++..|++-|-.++.+.+..|+.++.+++...+|.+.++.||..|..
T Consensus        22 ~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~   69 (77)
T smart00576       22 DSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALE   69 (77)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            467888999999999999999999999999999999999999998875

subdomain of archael histone-like transcription factors

>smart00428 H3 Histone H3

Probab=92.14  E-value=0.39  Score=35.66  Aligned_cols=35  Identities=29%  Similarity=0.345  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          8 VNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         8 v~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      .-+....+.++|..++.+.||.||.++|||-|.|+
T Consensus        66 sE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~ri  100 (105)
T smart00428       66 AEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRI  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHH
Confidence            34455566678899999999999999999999986

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=91.64  E-value=0.38  Score=41.70  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=33.9

Q ss_pred             HhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          5 NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         5 nsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      ..-+.+....|+.||.+++++.||+|++..||..|+|.
T Consensus        26 a~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~   63 (343)
T cd08050          26 AEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRL   63 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence            34556677889999999999999999999999999998

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG0869|consensus

Probab=91.38  E-value=0.37  Score=38.47  Aligned_cols=49  Identities=20%  Similarity=0.260  Sum_probs=46.5

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      -.||+.|-..|.-.|..+..=|..||+.-|+..||+||+-.||-.|.--
T Consensus        50 aKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~t   98 (168)
T KOG0869|consen   50 AKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMST   98 (168)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            6799999999999999999999999999999999999999999999753

>PTZ00252 histone H2A; Provisional

Probab=90.99  E-value=0.3  Score=37.84  Aligned_cols=36  Identities=28%  Similarity=0.401  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHhHHHh------hcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLAH------YNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L~~------~~kk~Tlt~reiqtAvrl   42 (148)
                      |+-.++|.++.|..+|+-      .+|+..|++|+||.|+|-
T Consensus        51 YLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIrN   92 (134)
T PTZ00252         51 YMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVRH   92 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhccC
Confidence            566788888888888873      368899999999999985

>PLN00154 histone H2A; Provisional

Probab=90.57  E-value=0.36  Score=37.50  Aligned_cols=36  Identities=36%  Similarity=0.402  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHhHHH----hhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLA----HYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L~----~~~kk~Tlt~reiqtAvrl   42 (148)
                      |+-.++|.++.|..+|+    +.+++..||+|+||.|+|-
T Consensus        65 YLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrn  104 (136)
T PLN00154         65 YTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG  104 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccC
Confidence            56778888888866665    6699999999999999984

>smart00414 H2A Histone 2A

Probab=88.72  E-value=0.67  Score=34.33  Aligned_cols=36  Identities=33%  Similarity=0.478  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHh----HHHhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESS----RLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~----~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      |+-.++|.++.|..    +-++.+++..||+++||.|++-
T Consensus        35 yLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~n   74 (106)
T smart00414       35 YLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRN   74 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccC
Confidence            45566666666644    4456789999999999999985

>PTZ00017 histone H2A; Provisional

Probab=88.23  E-value=0.69  Score=35.83  Aligned_cols=36  Identities=36%  Similarity=0.492  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHh----HHHhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESS----RLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~----~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      |+..++|.++.|..    +-++.+++..||+|+||.|++-
T Consensus        53 YLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~n   92 (134)
T PTZ00017         53 YLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRN   92 (134)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhccC
Confidence            34455666665544    4456799999999999999984

>PLN00153 histone H2A; Provisional

Probab=88.22  E-value=0.79  Score=35.30  Aligned_cols=36  Identities=36%  Similarity=0.525  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHhHH----HhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRL----AHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L----~~~~kk~Tlt~reiqtAvrl   42 (148)
                      |+-.+.|.++.|..+|    ++.+++..|+||+||.|++-
T Consensus        50 YLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~n   89 (129)
T PLN00153         50 YLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRN   89 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhccC
Confidence            4556666666665555    56699999999999999985

>PLN00157 histone H2A; Provisional

Probab=87.77  E-value=0.74  Score=35.57  Aligned_cols=36  Identities=44%  Similarity=0.556  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHhHH----HhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRL----AHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L----~~~~kk~Tlt~reiqtAvrl   42 (148)
                      |+-.++|.++.|..+|    ++.+++.-|++|+||.|+|-
T Consensus        52 YLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~n   91 (132)
T PLN00157         52 YLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRN   91 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhcccC
Confidence            4556677777765555    56689999999999999985

>PLN00156 histone H2AX; Provisional

Probab=87.49  E-value=0.92  Score=35.35  Aligned_cols=36  Identities=42%  Similarity=0.555  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHhHH----HhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRL----AHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L----~~~~kk~Tlt~reiqtAvrl   42 (148)
                      |+-.+.|.++.|..+|    ++.+++..|+||+||.|+|-
T Consensus        55 YLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIrn   94 (139)
T PLN00156         55 YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRN   94 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhccC
Confidence            4455666666665555    56789999999999999985

>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C

Probab=87.05  E-value=1.2  Score=31.08  Aligned_cols=48  Identities=19%  Similarity=0.313  Sum_probs=40.8

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..+|++.++-|.-++-+..+.++.+---.|+..||+||++.|+.-..|
T Consensus        24 ~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R   71 (76)
T PF15630_consen   24 VEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR   71 (76)
T ss_dssp             SEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence            578999999999999999999999999999999999999999876554

>KOG1756|consensus

Probab=85.36  E-value=1.8  Score=33.43  Aligned_cols=36  Identities=36%  Similarity=0.535  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHhHHH----hhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLA----HYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L~----~~~kk~Tlt~reiqtAvrl   42 (148)
                      |+.-.+|+++.|..+++    +-|+|.-|+||.||-|++-
T Consensus        53 ~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~N   92 (131)
T KOG1756|consen   53 YLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIRN   92 (131)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHhC
Confidence            55677888888876664    6699999999999999993

>KOG1142|consensus

Probab=84.49  E-value=0.85  Score=38.82  Aligned_cols=54  Identities=22%  Similarity=0.362  Sum_probs=47.5

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH----hhCchH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR----LLLPGE  128 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr----l~lpge  128 (148)
                      ..|-...-++|--+..|+.|-|..-++.||++.|..||-+||||..+.    +-+||.
T Consensus       171 ~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~iPgf  228 (258)
T KOG1142|consen  171 TKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEIPGF  228 (258)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccccccCCCc
Confidence            778888999999999999999999999999999999999999998764    445553

>PLN00160 histone H3; Provisional

Probab=84.33  E-value=2.4  Score=31.08  Aligned_cols=48  Identities=21%  Similarity=0.183  Sum_probs=36.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         76 PINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        76 ~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      .+.+.|+.-+..-..+.+-.+-+++.-.+.+.||.||.++|||-|-|+
T Consensus        44 Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~ri   91 (97)
T PLN00160         44 RWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARRI   91 (97)
T ss_pred             EeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHHh
Confidence            455666666666556666666667788889999999999999999873

>PLN00160 histone H3; Provisional

Probab=84.04  E-value=1.5  Score=32.11  Aligned_cols=35  Identities=34%  Similarity=0.489  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766          7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE   47 (148)
Q Consensus         7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge   47 (148)
                      |+-++||    ++.-.+.+.||.||.++|||-|.|+  .|+
T Consensus        60 yLv~lfe----d~~lca~HakRVTl~~kD~~L~~ri--rg~   94 (97)
T PLN00160         60 HLVGLFE----DSNLCAIHGKRVTIMPKDMQLARRI--RGQ   94 (97)
T ss_pred             HHHHHHh----hhHHHHHHhcccccchhhHHHHHHh--hcc
Confidence            3444454    5566789999999999999999885  554

>KOG1142|consensus

Probab=83.77  E-value=0.82  Score=38.90  Aligned_cols=46  Identities=26%  Similarity=0.373  Sum_probs=36.5

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH----hCCcccc
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL----LLPGELA   49 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl----~LpgeLa   49 (148)
                      |--+..|+.|.|..-|+.||++.|..||-.||||..+.-    -+||.=+
T Consensus       181 LleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~iPgf~s  230 (258)
T KOG1142|consen  181 LLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEIPGFSS  230 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccccccCCCccc
Confidence            444566777778888999999999999999999988754    5676544

>PLN00121 histone H3; Provisional

Probab=83.57  E-value=2.3  Score=33.00  Aligned_cols=49  Identities=22%  Similarity=0.248  Sum_probs=41.2

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..+.+.|+.-|.--..+.+-.+-+++.-.+.+.||.||.++|||-|.||
T Consensus        83 ~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri  131 (136)
T PLN00121         83 LRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI  131 (136)
T ss_pred             ceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHh
Confidence            5677788887777777777777778889999999999999999999874

>PTZ00018 histone H3; Provisional

Probab=82.57  E-value=2.7  Score=32.64  Aligned_cols=49  Identities=22%  Similarity=0.248  Sum_probs=41.5

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      +.+.+.|+.-|.--..+.+-.+-+++.-.+.+.||.||.++|||-|.||
T Consensus        83 ~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri  131 (136)
T PTZ00018         83 LRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI  131 (136)
T ss_pred             ceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHh
Confidence            5677788888877777777777778888999999999999999999875

>KOG0871|consensus

Probab=82.41  E-value=3.1  Score=32.99  Aligned_cols=34  Identities=18%  Similarity=0.359  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766         10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLL   43 (148)
Q Consensus        10 Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~   43 (148)
                      .+..-|+.||.+.|....|+||.+.+++.|..-+
T Consensus        46 EFI~liSsEAneic~~e~KKTIa~EHV~KALe~L   79 (156)
T KOG0871|consen   46 EFINLISSEANEICNKEAKKTIAPEHVIKALENL   79 (156)
T ss_pred             HHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHc
Confidence            4566799999999999999999999999999864

>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO)

Probab=82.39  E-value=5.4  Score=26.98  Aligned_cols=48  Identities=10%  Similarity=0.229  Sum_probs=44.7

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      -+++..|++.+..++.+.+.+|+..+...+...+|...+..|+..|..
T Consensus        22 ~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~   69 (77)
T PF07524_consen   22 DSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALE   69 (77)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            578999999999999999999999999999999999999999998865

The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].

>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18)

Probab=81.62  E-value=2  Score=30.78  Aligned_cols=47  Identities=11%  Similarity=0.190  Sum_probs=23.4

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         76 PINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        76 ~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      --+.++..+|..+|.+-.-.+..+|..+|...++..|+..|+-.++|
T Consensus        19 ~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR   65 (93)
T PF02269_consen   19 EPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLR   65 (93)
T ss_dssp             S--HHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHh
Confidence            34678899999999999999999999999999999999999999887

Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.

>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins

Probab=81.43  E-value=4.2  Score=27.79  Aligned_cols=36  Identities=8%  Similarity=0.156  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      ++-+.+..|+.++.+++...+|.+.+..||..|..-
T Consensus        35 i~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~   70 (77)
T smart00576       35 ILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN   70 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            444556889999999999999999999999988763

subdomain of archael histone-like transcription factors

>PLN00161 histone H3; Provisional

Probab=81.11  E-value=3.9  Score=31.76  Aligned_cols=49  Identities=20%  Similarity=0.272  Sum_probs=39.5

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      +.+.+.|+.-|..-..+.+-.+-+++.-.+.+.||.||.++|||-|.||
T Consensus        77 ~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~ri  125 (135)
T PLN00161         77 FRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRI  125 (135)
T ss_pred             cEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHh
Confidence            4466777777776666666667778888899999999999999999885

>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T

Probab=80.65  E-value=2.2  Score=38.03  Aligned_cols=42  Identities=19%  Similarity=0.298  Sum_probs=36.0

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSRE  116 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~re  116 (148)
                      +.|+++||..+....+.+||.++..=.-.|.+.+|+||...|
T Consensus       373 ~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD  414 (414)
T PF15511_consen  373 MKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD  414 (414)
T ss_dssp             S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence            679999999999999999999999999999999999998764

>KOG0869|consensus

Probab=80.49  E-value=3.3  Score=33.13  Aligned_cols=40  Identities=20%  Similarity=0.296  Sum_probs=34.3

Q ss_pred             hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      .|.-.|..+.-=|..||+.-|...||+||+-.||-.|.--
T Consensus        59 ~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~t   98 (168)
T KOG0869|consen   59 TVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMST   98 (168)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            4556677777788999999999999999999999998753

>PLN00161 histone H3; Provisional

Probab=80.25  E-value=2.7  Score=32.61  Aligned_cols=32  Identities=34%  Similarity=0.506  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      |+-++||    ++.-++.+.||.||.++|||-|.|+
T Consensus        94 yLV~lFe----da~lcaiHAkRVTlm~kDm~La~ri  125 (135)
T PLN00161         94 FLVHLFE----DCNLCAIHAKRVTIMPKDMQLARRI  125 (135)
T ss_pred             HHHHHHH----HHHHHHHHhcCcccchhhHHHHHHh
Confidence            4455555    5667889999999999999999986

>KOG2549|consensus

Probab=80.19  E-value=3.9  Score=38.35  Aligned_cols=50  Identities=20%  Similarity=0.286  Sum_probs=45.2

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      ..|+-++-..+---+..=.++|+.+|++.++..||.++|..||..|.|..
T Consensus        27 ~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~   76 (576)
T KOG2549|consen   27 TNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSL   76 (576)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhc
Confidence            44678888888888899999999999999999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
3c9k_B	125	Model Of Histone Octamer Tubular Crystals Length =		3e-34
2nqb_D	123	Drosophila Nucleosome Structure Length = 123		3e-34
2pyo_D	122	Drosophila Nucleosome Core Length = 122		4e-34
1zla_D	125	X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L		1e-33
1p34_D	125	Crystallographic Studies Of Nucleosome Core Particl		1e-33
1s32_D	122	Molecular Recognition Of The Nucleosomal 'supergroo		1e-33
3c1b_D	125	The Effect Of H3 K79 Dimethylation And H4 K20 Trime		1e-33
1kx3_D	125	X-Ray Structure Of The Nucleosome Core Particle, Nc		1e-33
2hio_B	125	Histone Octamer (Chicken), Chromosomal Protein Leng		1e-33
2f8n_H	123	2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nuc		1e-33
1f66_D	126	2.6 A Crystal Structure Of A Nucleosome Core Partic		1e-33
1eqz_B	126	X-Ray Structure Of The Nucleosome Core Particle At		1e-33
1u35_D	126	Crystal Structure Of The Nucleosome Core Particle C		2e-33
3a6n_D	129	The Nucleosome Containing A Testis-Specific Histone		2e-33
2cv5_D	126	Crystal Structure Of Human Nucleosome Core Particle		2e-33
2xql_B	90	Fitting Of The H2a-H2b Histones In The Electron Mic		2e-33
1aoi_D	99	Complex Between Nucleosome Core Particle (H3,H4,H2a		3e-33
3kwq_D	93	Structural Characterization Of H3k56q Nucleosomes A		3e-33
3an2_D	129	The Structure Of The Centromeric Nucleosome Contain		9e-32
1hio_B	90	Histone Octamer (Chicken), Chromosomal Protein, Alp		7e-31
1id3_D	130	Crystal Structure Of The Yeast Nucleosome Core Part		5e-29
2jss_A	192	Nmr Structure Of Chaperone Chz1 Complexed With Hist		3e-27

>pdb|3C9K|B Chain B, Model Of Histone Octamer Tubular Crystals Length = 125

Iteration: 1
 Score =  140 bits (352), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 70/72 (97%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 54  ISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 113
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 114 GTKAVTKYTSSK 125

>pdb|2NQB|D Chain D, Drosophila Nucleosome Structure Length = 123

Iteration: 1
 Score =  140 bits (352), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 52  ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 112 GTKAVTKYTSSK 123

>pdb|2PYO|D Chain D, Drosophila Nucleosome Core Length = 122

Iteration: 1
 Score =  140 bits (352), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 51  ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 110
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 111 GTKAVTKYTSSK 122

>pdb|1ZLA|D Chain D, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 125

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 54  ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 113
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTS+K
Sbjct: 114 GTKAVTKYTSAK 125

>pdb|1P34|D Chain D, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 125

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 54  ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 113
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTS+K
Sbjct: 114 GTKAVTKYTSAK 125

>pdb|1S32|D Chain D, Molecular Recognition Of The Nucleosomal 'supergroove' Length = 122

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 51  ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 110
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTS+K
Sbjct: 111 GTKAVTKYTSAK 122

>pdb|3C1B|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 125

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 54  ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 113
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTS+K
Sbjct: 114 GTKAVTKYTSAK 125

>pdb|1KX3|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 125

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 54  ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 113
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTS+K
Sbjct: 114 GTKAVTKYTSAK 125

>pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein Length = 125

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/72 (93%), Positives = 69/72 (95%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 54  ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 113
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 114 GTKAVTKYTSSK 125

>pdb|2F8N|H Chain H, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nucleosomes Length = 123

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 52  ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTS+K
Sbjct: 112 GTKAVTKYTSAK 123

>pdb|1F66|D Chain D, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 126

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 55  ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 114
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTS+K
Sbjct: 115 GTKAVTKYTSAK 126

>pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A Resolution Length = 126

Iteration: 1
 Score =  138 bits (347), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/72 (93%), Positives = 69/72 (95%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 55  ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 114
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 115 GTKAVTKYTSSK 126

>pdb|1U35|D Chain D, Crystal Structure Of The Nucleosome Core Particle Containing The Histone Domain Of Macroh2a Length = 126

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAM IMNSFVNDIFERIA+E+SRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSE
Sbjct: 55  ISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSE 114
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 115 GTKAVTKYTSSK 126

>pdb|3A6N|D Chain D, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 129

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 69/72 (95%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 58  ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 117
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTS+K
Sbjct: 118 GTKAVTKYTSAK 129

>pdb|2CV5|D Chain D, Crystal Structure Of Human Nucleosome Core Particle Length = 126

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 69/72 (95%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 55  ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 114
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTS+K
Sbjct: 115 GTKAVTKYTSAK 126

>pdb|2XQL|B Chain B, Fitting Of The H2a-H2b Histones In The Electron Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5). Length = 90

Iteration: 1
 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/72 (93%), Positives = 69/72 (95%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 19  ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 78
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTSSK
Sbjct: 79  GTKAVTKYTSSK 90

>pdb|1AOI|D Chain D, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 99

Iteration: 1
 Score =  137 bits (344), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 28  ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 87
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTS+K
Sbjct: 88  GTKAVTKYTSAK 99

>pdb|3KWQ|D Chain D, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 93

Iteration: 1
 Score =  137 bits (344), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 22  ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 81
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTS+K
Sbjct: 82  GTKAVTKYTSAK 93

>pdb|3AN2|D Chain D, The Structure Of The Centromeric Nucleosome Containing Cenp-A Length = 129

Iteration: 1
 Score =  132 bits (331), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 64/72 (88%), Positives = 67/72 (93%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KA  I NSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 58  ISSKAXGIXNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 117
Query: 137 GTKAVTKYTSSK 148
           GTKAVTKYTS+K
Sbjct: 118 GTKAVTKYTSAK 129

>pdb|1HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 90

Iteration: 1
 Score =  129 bits (323), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 64/72 (88%), Positives = 67/72 (93%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAM  MNSFVNDIFERIA  +SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 19  ISSKAMGSMNSFVNDIFERIAGLASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 78
Query: 137 GTKAVTKYTSSK 148
           GTKAVTK+TSSK
Sbjct: 79  GTKAVTKHTSSK 90

>pdb|1ID3|D Chain D, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 130

Iteration: 1
 Score =  122 bits (307), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 68/71 (95%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REIQTAVRL+LPGELAKHAVSE
Sbjct: 57  ISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSE 116
Query: 137 GTKAVTKYTSS 147
           GT+AVTKY+SS
Sbjct: 117 GTRAVTKYSSS 127

>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone H2a.Z-H2b Length = 192

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/68 (80%), Positives = 65/68 (95%)
Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REIQTAVRL+LPGELAKHAVSE
Sbjct: 22  ISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSE 81
Query: 137 GTKAVTKY 144
           GT+AVTKY
Sbjct: 82  GTRAVTKY 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	6e-30
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	1e-27
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	7e-28
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	1e-25
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	5e-14
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* Length = 123

 Score =  104 bits (260), Expect = 6e-30
 Identities = 69/74 (93%), Positives = 71/74 (95%)

Query: 75  LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 134
             I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV
Sbjct: 50  TGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 109

Query: 135 SEGTKAVTKYTSSK 148
           SEGTKAVTKYTSSK
Sbjct: 110 SEGTKAVTKYTSSK 123

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* Length = 123

 Score = 98.6 bits (245), Expect = 1e-27
 Identities = 65/66 (98%), Positives = 66/66 (100%)

Query: 1   MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
           MSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 57  MSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 116

Query: 61  TKYTSS 66
           TKYTSS
Sbjct: 117 TKYTSS 122

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ... Length = 126

 Score = 99.1 bits (246), Expect = 7e-28
 Identities = 67/74 (90%), Positives = 69/74 (93%)

Query: 75  LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 134
             I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV
Sbjct: 53  TGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 112

Query: 135 SEGTKAVTKYTSSK 148
           SEGTKAVTKYTSSK
Sbjct: 113 SEGTKAVTKYTSSK 126

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ... Length = 126

 Score = 93.3 bits (231), Expect = 1e-25
 Identities = 63/66 (95%), Positives = 64/66 (96%)

Query: 1   MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
           M IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 60  MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 119

Query: 61  TKYTSS 66
           TKYTSS
Sbjct: 120 TKYTSS 125

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Length = 192

 Score = 64.8 bits (156), Expect = 5e-14
 Identities = 66/144 (45%), Positives = 84/144 (58%), Gaps = 22/144 (15%)

Query: 1   MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
           MSI+NSFVNDIFERIA E+S+LA YNK+STI++REIQTAVRL+LPGELAKHAVSEGT+AV
Sbjct: 27  MSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAV 86

Query: 61  TKYTSSNDTLSVLVLP----------------------INIKAMSIMNSFVNDIFERIAA 98
           TKY+SS    S                           +  KA   + + +  +   +  
Sbjct: 87  TKYSSSTQAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLE 146

Query: 99  ESSRLAHYNKRSTITSREIQTAVR 122
            +   A   K   IT R +Q A+R
Sbjct: 147 LAGNAAKDLKVKRITPRHLQLAIR 170

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Length = 192

 Score = 64.4 bits (155), Expect = 1e-13
 Identities = 55/71 (77%), Positives = 66/71 (92%)

Query: 75  LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 134
             I+ K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REIQTAVRL+LPGELAKHAV
Sbjct: 20  TGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAV 79

Query: 135 SEGTKAVTKYT 145
           SEGT+AVTKY+
Sbjct: 80  SEGTRAVTKYS 90

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 33/156 (21%), Positives = 52/156 (33%), Gaps = 36/156 (23%)

Query: 1   MSIMNSFVNDIFERIAAESSRLAHYN--KRSTITSREIQTAVRLLLPGELAKH----AV- 53
           +SI+   + D             H N  K +TI    I++++ +L P E  K     +V 
Sbjct: 330 LSIIAESIRDGLATW----DNWKHVNCDKLTTI----IESSLNVLEPAEYRKMFDRLSVF 381

Query: 54  SEGTKAVTKYTSSNDTLSVL-VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTI 112
                  T        LS++    I    M ++N              S +    K STI
Sbjct: 382 PPSAHIPTI------LLSLIWFDVIKSDVMVVVNKLHK---------YSLVEKQPKESTI 426

Query: 113 TSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 148
           +   I   +++ L  E A H        V  Y   K
Sbjct: 427 SIPSIYLELKVKLENEYALHR-----SIVDHYNIPK 457

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	100.0
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	100.0
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	99.98
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	99.98
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	99.97
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	99.96
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	99.39
3b0c_W	76	CENP-W, centromere protein W; histone fold, DNA bi	99.04
3b0c_W	76	CENP-W, centromere protein W; histone fold, DNA bi	98.69
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	98.42
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	97.79
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	97.76
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	97.74
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	97.64
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	97.52
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	97.49
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	97.47
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	97.38
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	97.38
1id3_B	102	Histone H4; nucleosome core particle, chromatin, p	97.34
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	97.31
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	97.29
2hue_C	84	Histone H4; mini beta sheet, elongated beta sandwh	97.23
2ly8_A	121	Budding yeast chaperone SCM3; centromere protein,	97.22
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	97.22
1taf_B	70	TFIID TBP associated factor 62; transcription init	97.21
3b0c_T	111	CENP-T, centromere protein T; histone fold, DNA bi	97.05
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	97.0
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	96.97
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	96.94
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	96.9
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	96.78
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	96.68
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	96.64
1taf_A	68	TFIID TBP associated factor 42; transcription init	96.49
1taf_B	70	TFIID TBP associated factor 62; transcription init	96.42
1id3_B	102	Histone H4; nucleosome core particle, chromatin, p	96.38
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	96.34
3b0b_B	107	CENP-S, centromere protein S; histone fold, DNA bi	96.33
4dra_A	113	Centromere protein S; DNA binding complex, DNA dam	96.3
3v9r_A	90	MHF1, uncharacterized protein YOL086W-A; histone f	96.29
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	96.22
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	96.19
2hue_C	84	Histone H4; mini beta sheet, elongated beta sandwh	96.14
3vh5_A	140	CENP-S; histone fold, chromosome segregation, DNA	95.99
2byk_B	128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	95.81
3b0c_T	111	CENP-T, centromere protein T; histone fold, DNA bi	95.71
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	95.47
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	95.41
2byk_A	140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	95.3
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	95.24
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	95.22
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	95.18
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	95.17
1taf_A	68	TFIID TBP associated factor 42; transcription init	95.14
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	95.04
1jfi_B	179	DR1 protein, transcription regulator NC2 beta chai	95.01
3r45_A	156	Histone H3-like centromeric protein A; histone fol	94.99
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	94.91
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	94.86
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	94.82
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	94.71
2ly8_A	121	Budding yeast chaperone SCM3; centromere protein,	94.5
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	94.38
3b0b_B	107	CENP-S, centromere protein S; histone fold, DNA bi	94.26
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	94.12
3v9r_A	90	MHF1, uncharacterized protein YOL086W-A; histone f	94.05
4dra_A	113	Centromere protein S; DNA binding complex, DNA dam	93.71
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	93.19
3vh5_A	140	CENP-S; histone fold, chromosome segregation, DNA	93.16
1h3o_B	76	Transcription initiation factor TFIID 20/15 kDa su	93.01
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	92.78
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	92.74
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	92.09
3r45_A	156	Histone H3-like centromeric protein A; histone fol	91.75
2byk_B	128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	91.59
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	91.17
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	90.88
1h3o_B	76	Transcription initiation factor TFIID 20/15 kDa su	90.63
1jfi_B	179	DR1 protein, transcription regulator NC2 beta chai	89.7
2byk_A	140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	86.13

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...

Probab=100.00  E-value=4.5e-43  Score=264.21  Aligned_cols=87  Identities=83%  Similarity=0.999  Sum_probs=82.7

Q ss_pred             ccccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhh
Q psy17766         62 KYTSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE  136 (148)
Q Consensus        62 k~~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~e  136 (148)
                      +-+++.||||||  |   +|||++||+||||||||||||||.||++|++||||+|||+||||+||||+|||||+||||+|
T Consensus        35 ~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvse  114 (126)
T 1tzy_B           35 KESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE  114 (126)
T ss_dssp             CCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHHHHHHHHHH
Confidence            445678999999  6   99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccccCC
Q psy17766        137 GTKAVTKYTSSK  148 (148)
Q Consensus       137 g~kav~~~~~~k  148 (148)
                      |+|||++|+++|
T Consensus       115 GtkAV~ky~ssk  126 (126)
T 1tzy_B          115 GTKAVTKYTSSK  126 (126)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHhcccCCC
Confidence            999999999885

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*

Probab=100.00  E-value=6.7e-43  Score=262.32  Aligned_cols=87  Identities=84%  Similarity=1.012  Sum_probs=83.4

Q ss_pred             ccccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhh
Q psy17766         62 KYTSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE  136 (148)
Q Consensus        62 k~~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~e  136 (148)
                      +-+++.||||||  |   +|||++||+||||||||||||||.||++|++||+|+|||+||||+||||+|||||+||||+|
T Consensus        32 ~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvse  111 (123)
T 2nqb_D           32 KESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE  111 (123)
T ss_dssp             CCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHHHHHHHHHH
Confidence            445678999999  6   99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccccCC
Q psy17766        137 GTKAVTKYTSSK  148 (148)
Q Consensus       137 g~kav~~~~~~k  148 (148)
                      |+|||++|+++|
T Consensus       112 GtkAV~ky~ss~  123 (123)
T 2nqb_D          112 GTKAVTKYTSSK  123 (123)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHhcccCCC
Confidence            999999999986

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...

Probab=99.98  E-value=2.2e-34  Score=216.87  Aligned_cols=67  Identities=94%  Similarity=1.219  Sum_probs=64.9

Q ss_pred             CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccCC
Q psy17766          1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSN   67 (148)
Q Consensus         1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sSk   67 (148)
                      |+||||||||||||||.||++|++||||+|||+||||+||||+|||||+|||++||++||++|++++
T Consensus        60 m~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ssk  126 (126)
T 1tzy_B           60 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK  126 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCC
Confidence            7899999999999999999999999999999999999999999999999999999999999998863

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*

Probab=99.98  E-value=3.2e-34  Score=215.25  Aligned_cols=67  Identities=97%  Similarity=1.237  Sum_probs=65.3

Q ss_pred             CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccCC
Q psy17766          1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSN   67 (148)
Q Consensus         1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sSk   67 (148)
                      |+||||||||||||||.||++|++||+|+|||+||||+||||+|||||+|||++||++||++|++++
T Consensus        57 m~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ss~  123 (123)
T 2nqb_D           57 MSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK  123 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCC
Confidence            7899999999999999999999999999999999999999999999999999999999999998863

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=99.97  E-value=1e-31  Score=213.88  Aligned_cols=129  Identities=53%  Similarity=0.676  Sum_probs=116.6

Q ss_pred             CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccCC-------------
Q psy17766          1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSN-------------   67 (148)
Q Consensus         1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sSk-------------   67 (148)
                      |++||||++|+||||+.||++|+++++|+|+|+||||+|||++|||||+|||++||++|+++|..++             
T Consensus        27 m~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~eG~kAv~k~~~sk~~~s~s~ragl~f  106 (192)
T 2jss_A           27 MSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSSTQAQSSSARAGLQF  106 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHCSSSCHHHHSSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhccccccccccccCCCcC
Confidence            6799999999999999999999999999999999999999999999999999999999999996532             


Q ss_pred             ---Ccccee--e----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHH
Q psy17766         68 ---DTLSVL--V----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK  131 (148)
Q Consensus        68 ---yi~kvL--v----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLak  131 (148)
                         .|+|.|  .    ..||..|-..|-..+.++...|.+.|.+.++.+|+.+|+|++||.|++  =..||.+
T Consensus       107 Pv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~--nD~eL~~  177 (192)
T 2jss_A          107 PVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR--GDDELDS  177 (192)
T ss_dssp             CHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH--TSHHHHH
T ss_pred             CHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh--ccHHHHH
Confidence               255555  1    369999999999999999999999999999999999999999999999  3445443

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=99.96  E-value=3.2e-31  Score=211.00  Aligned_cols=85  Identities=72%  Similarity=0.936  Sum_probs=81.0

Q ss_pred             cccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhhh
Q psy17766         63 YTSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG  137 (148)
Q Consensus        63 ~~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~eg  137 (148)
                      -+++.||||||  |   +|||++||++||+|++|+||||+.||++|+++++|+|+|+||||+||||+|||||+|||++||
T Consensus         3 ~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~eG   82 (192)
T 2jss_A            3 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEG   82 (192)
T ss_dssp             STTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHHHH
T ss_pred             chHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            45678999999  5   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccccC
Q psy17766        138 TKAVTKYTSS  147 (148)
Q Consensus       138 ~kav~~~~~~  147 (148)
                      +|||++|+++
T Consensus        83 ~kAv~k~~~s   92 (192)
T 2jss_A           83 TRAVTKYSSS   92 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhhccc
Confidence            9999999653

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=99.39  E-value=1.5e-12  Score=100.80  Aligned_cols=115  Identities=13%  Similarity=0.270  Sum_probs=89.4

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccCCCcccee----eeccch
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSNDTLSVL----VLPINI   79 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sSkyi~kvL----v~~IS~   79 (148)
                      +...+..+.+.|+.+|..++.+.+|+||++.||..|+.-+==++.--.+--+       + .-..|.|.+    +..||+
T Consensus        31 l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d~~~l~-------l-P~a~V~Ri~k~~g~~RVS~  102 (154)
T 1f1e_A           31 IYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGEL-------F-GRATVRRILKRAGIERASS  102 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTCCSCC-------C-CHHHHHHHHHHTTCCEECH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCcccccc-------C-CccHHHHHHHHcCCccchH
Confidence            4556778888999999999999999999999999999543111110000000       0 000122222    268999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCc
Q psy17766         80 KAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP  126 (148)
Q Consensus        80 kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lp  126 (148)
                      .|...|...+.++.+.|+.+|..++++.+|+||+++||+.|++..||
T Consensus       103 ~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~  149 (154)
T 1f1e_A          103 DAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMP  149 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W

Probab=99.04  E-value=1.7e-10  Score=79.12  Aligned_cols=52  Identities=19%  Similarity=0.207  Sum_probs=50.0

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCc
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP  126 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lp  126 (148)
                      .+||+.|+.+|+.++.+++++|+.||..+|+.++|.||+++||+.|++.+|-
T Consensus        21 ~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~   72 (76)
T 3b0c_W           21 LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK   72 (76)
T ss_dssp             CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999998763

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W

Probab=98.69  E-value=1.5e-08  Score=69.26  Aligned_cols=44  Identities=20%  Similarity=0.220  Sum_probs=41.7

Q ss_pred             chhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCC
Q psy17766          2 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP   45 (148)
Q Consensus         2 ~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lp   45 (148)
                      .+|++++.+++++|+.||..+|++++|+||+++||+.|++.+|-
T Consensus        29 ~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~   72 (76)
T 3b0c_W           29 LLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK   72 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999998763

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=98.42  E-value=2.9e-07  Score=61.08  Aligned_cols=50  Identities=24%  Similarity=0.333  Sum_probs=48.1

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      ..||+.|+..|.....++++.|+++|...+...||.||+++|||.|++.+
T Consensus        18 ~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l   67 (68)
T 1b67_A           18 ERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF   67 (68)
T ss_dssp             SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence            57999999999999999999999999999999999999999999999865

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=97.79  E-value=2.3e-05  Score=51.74  Aligned_cols=41  Identities=27%  Similarity=0.438  Sum_probs=37.9

Q ss_pred             hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766          3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL   43 (148)
Q Consensus         3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~   43 (148)
                      .+.....++++.|+.+|...+.+.||+||+++|||.|++.+
T Consensus        27 ~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l   67 (68)
T 1b67_A           27 ALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence            56778899999999999999999999999999999999864

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=97.76  E-value=3e-05  Score=55.69  Aligned_cols=50  Identities=16%  Similarity=0.189  Sum_probs=48.0

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      ..||..+...+...+.++++.|+.+|...+++++|+||+++||+.|++-+
T Consensus        45 ~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~   94 (103)
T 2yfw_B           45 KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ   94 (103)
T ss_dssp             CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            68999999999999999999999999999999999999999999999854

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=97.74  E-value=3.5e-05  Score=55.28  Aligned_cols=50  Identities=14%  Similarity=0.151  Sum_probs=48.0

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      ..||..+...+...+.+.++.|+.+|...+++++|+|||++||+.|++-+
T Consensus        45 ~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~   94 (103)
T 1tzy_D           45 KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   94 (103)
T ss_dssp             CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence            68999999999999999999999999999999999999999999999854

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=97.64  E-value=7.5e-05  Score=49.73  Aligned_cols=48  Identities=17%  Similarity=0.321  Sum_probs=46.3

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..+|+.+..-+..++.+.++.|+.+|...+++.||+||+++||+.|++
T Consensus        22 ~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~   69 (70)
T 1ku5_A           22 ERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   69 (70)
T ss_dssp             SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999986

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.00062  Score=55.72  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=47.6

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      -.||..+..-+...+.+.++.|+.+|..++.+.+|+|+|+.||--|++..
T Consensus       177 kRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~  226 (235)
T 2l5a_A          177 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ  226 (235)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence            67999999999999999999999999999999999999999999998854

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=97.49  E-value=0.00013  Score=56.29  Aligned_cols=44  Identities=16%  Similarity=0.381  Sum_probs=41.5

Q ss_pred             hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCc
Q psy17766          3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG   46 (148)
Q Consensus         3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpg   46 (148)
                      .+..++.++.+.|+.+|..+|++.+|+||+++||+.|++..||.
T Consensus       107 ~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~  150 (154)
T 1f1e_A          107 LYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK  150 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence            46788999999999999999999999999999999999999994

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=97.47  E-value=6.2e-05  Score=56.52  Aligned_cols=55  Identities=22%  Similarity=0.251  Sum_probs=50.7

Q ss_pred             Ccccee-----eeccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         68 DTLSVL-----VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        68 yi~kvL-----v~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      .|+|.|     ...||..|-.+|-..+.++...|.+.|.+.++.+++.+|++|+||.|++
T Consensus        30 rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~   89 (131)
T 1id3_C           30 RVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR   89 (131)
T ss_dssp             HHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence            456666     1679999999999999999999999999999999999999999999999

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*

Probab=97.38  E-value=0.00023  Score=52.85  Aligned_cols=55  Identities=18%  Similarity=0.230  Sum_probs=50.6

Q ss_pred             Ccccee-----eeccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         68 DTLSVL-----VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        68 yi~kvL-----v~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      .|+|.|     ...||..|-.+|...+.++...|.+.|.+.++.+++.+|++++||.|++
T Consensus        28 ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~   87 (123)
T 2nqb_C           28 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR   87 (123)
T ss_dssp             HHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence            456666     1679999999999999999999999999999999999999999999999

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C

Probab=97.38  E-value=0.00023  Score=52.60  Aligned_cols=55  Identities=24%  Similarity=0.241  Sum_probs=50.5

Q ss_pred             Cccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         68 DTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        68 yi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      .|+|.|.     ..||..|-.+|...+.++...|.+.|.+.++.+++.+|++++||.|++
T Consensus        27 ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~   86 (120)
T 2f8n_G           27 RMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA   86 (120)
T ss_dssp             HHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence            4566661     679999999999999999999999999999999999999999999999

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=97.34  E-value=0.00027  Score=50.74  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=47.9

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      ..||..+..-+...+.+.++.|+.||...+++.+|+|||..||..|.+-+
T Consensus        44 ~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~   93 (102)
T 1id3_B           44 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ   93 (102)
T ss_dssp             CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            78999999999999999999999999999999999999999999999854

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...

Probab=97.31  E-value=0.0003  Score=52.61  Aligned_cols=55  Identities=20%  Similarity=0.241  Sum_probs=50.7

Q ss_pred             Ccccee-----eeccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         68 DTLSVL-----VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        68 yi~kvL-----v~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      .|+|.|     ...||..|-.+|-..+.++...|.+.|.+.++.+++.+|++|+||.|++
T Consensus        30 rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~   89 (129)
T 1tzy_A           30 RVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR   89 (129)
T ss_dssp             HHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence            456666     1679999999999999999999999999999999999999999999999

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1

Probab=97.29  E-value=0.0003  Score=52.54  Aligned_cols=55  Identities=16%  Similarity=0.129  Sum_probs=50.3

Q ss_pred             Ccccee---e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         68 DTLSVL---V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        68 yi~kvL---v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      .|+|.|   .   ..||..|-.+|-..+.++...|.+.|.+.++.+++.+|++|+||.|++
T Consensus        32 ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~   92 (128)
T 1f66_C           32 RIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR   92 (128)
T ss_dssp             HHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence            456666   1   379999999999999999999999999999999999999999999998

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B

Probab=97.23  E-value=0.00029  Score=48.73  Aligned_cols=50  Identities=14%  Similarity=0.151  Sum_probs=47.4

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      ..||..+..-+...+.+.++.|+.+|...+++.+|+|+|..||..|.+-+
T Consensus        26 ~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~   75 (84)
T 2hue_C           26 KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   75 (84)
T ss_dssp             CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            67999999999999999999999999999999999999999999998743

>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.0011  Score=49.27  Aligned_cols=95  Identities=24%  Similarity=0.280  Sum_probs=71.2

Q ss_pred             HHHHHHHHhHHHhhc-CCCCCCh---hHHHHHHHHhCCcc------ccccccccccccccccccCCCccceeeeccchHH
Q psy17766         12 FERIAAESSRLAHYN-KRSTITS---REIQTAVRLLLPGE------LAKHAVSEGTKAVTKYTSSNDTLSVLVLPINIKA   81 (148)
Q Consensus        12 feria~Ea~~L~~~~-kk~Tlt~---reiqtAvrl~Lpge------LakhAv~eG~kav~k~~sSkyi~kvLv~~IS~ka   81 (148)
                      |.|+..|..+=.... .-.-.++   .-+|.|..-.|-|-      .+-||...|-+                 .||..+
T Consensus         7 F~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvk-----------------RIS~~i   69 (121)
T 2ly8_A            7 FARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSK-----------------RISGLI   69 (121)
T ss_dssp             HHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSS-----------------CCSSCH
T ss_pred             hHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCcc-----------------chhHHH
Confidence            677777765433221 0112222   34788888777763      36888555554                 788888


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         82 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        82 m~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..-+...+++.++.|+.+|..++.+.+|+|+|+.||--|.+.
T Consensus        70 y~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr  111 (121)
T 2ly8_A           70 YEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR  111 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence            888999999999999999999999999999999999999873

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1

Probab=97.22  E-value=0.00036  Score=53.54  Aligned_cols=55  Identities=20%  Similarity=0.228  Sum_probs=50.5

Q ss_pred             Cccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         68 DTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        68 yi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      .|+|.|.     ..||..|-.+|-..+.++...|.+.|.+.|+.+++.+|++|+||.|++
T Consensus        49 rI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~  108 (149)
T 2f8n_K           49 RVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR  108 (149)
T ss_dssp             HHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence            4566661     679999999999999999999999999999999999999999999999

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=97.21  E-value=0.00059  Score=46.23  Aligned_cols=49  Identities=16%  Similarity=0.288  Sum_probs=45.4

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..+|..+-..|-.-+.+-...|+.||.++++..||+|||..||..|.++
T Consensus        22 ~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~   70 (70)
T 1taf_B           22 GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence            5678999999999999999999999999999999999999999999874

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T

Probab=97.05  E-value=0.00094  Score=48.57  Aligned_cols=49  Identities=16%  Similarity=0.323  Sum_probs=47.1

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..||..+..-+..++.++++.|+.+|...+++.+|+||+..||..|++-
T Consensus        23 ~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr   71 (111)
T 3b0c_T           23 TPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR   71 (111)
T ss_dssp             SCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999874

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=97.00  E-value=0.0009  Score=47.88  Aligned_cols=40  Identities=18%  Similarity=0.304  Sum_probs=36.3

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL   43 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~   43 (148)
                      +...+...++.|+.+|...+++++|+||+++||+.|++-+
T Consensus        55 l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~   94 (103)
T 2yfw_B           55 VRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ   94 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            4567788899999999999999999999999999999964

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=96.97  E-value=0.001  Score=47.57  Aligned_cols=40  Identities=15%  Similarity=0.257  Sum_probs=36.2

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL   43 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~   43 (148)
                      +...+...++.|+.+|...+++++|+||+++||+.|++-+
T Consensus        55 l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~   94 (103)
T 1tzy_D           55 TRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   94 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence            4556788899999999999999999999999999999964

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=96.94  E-value=0.0017  Score=45.34  Aligned_cols=48  Identities=27%  Similarity=0.306  Sum_probs=46.3

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..||+.|...+.-....+...|+.+|...|...+|.||+..||+.|++
T Consensus        26 ~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~   73 (93)
T 1n1j_A           26 GKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS   73 (93)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            579999999999999999999999999999999999999999999998

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=96.90  E-value=0.0013  Score=46.41  Aligned_cols=48  Identities=17%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..||..|-..+.-....+.+.|+.+|...++.+||+||+++||+.||+
T Consensus        36 ~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~   83 (97)
T 1n1j_B           36 KMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT   83 (97)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred             cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHh
Confidence            569999999999999999999999999999999999999999999987

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=96.78  E-value=0.0015  Score=43.26  Aligned_cols=38  Identities=18%  Similarity=0.370  Sum_probs=34.4

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR   41 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr   41 (148)
                      +..++.+.++.|+.+|...+.+.||+||+++||+.|++
T Consensus        32 l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~   69 (70)
T 1ku5_A           32 LAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   69 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence            44577888899999999999999999999999999986

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=96.68  E-value=0.0022  Score=47.01  Aligned_cols=48  Identities=19%  Similarity=0.166  Sum_probs=46.2

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..||+.|-.++.-....+...|+++|...|+.+||+||+++||+.||+
T Consensus        58 ~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~  105 (119)
T 4g92_C           58 KMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS  105 (119)
T ss_dssp             CEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence            789999999999999999999999999999999999999999999996

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=96.64  E-value=0.0011  Score=47.10  Aligned_cols=48  Identities=8%  Similarity=0.198  Sum_probs=42.9

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..||..|-.++.-....+.+.|+++|.+.++.++|.||+++||+.||+
T Consensus        28 ~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~   75 (98)
T 1jfi_A           28 GKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE   75 (98)
T ss_dssp             CCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence            679999999999999999999999999999999999999999999986

>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=96.49  E-value=0.0044  Score=41.65  Aligned_cols=51  Identities=14%  Similarity=0.198  Sum_probs=47.3

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhC
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL  125 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~l  125 (148)
                      ...|..+..-|--|+...-..|+.+|..++.+.+|+|++..||+.|++..+
T Consensus        17 ~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~   67 (68)
T 1taf_A           17 QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL   67 (68)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence            567899999999999999999999999999999999999999999998643

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=96.42  E-value=0.0034  Score=42.43  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      -+..-...|+.||.+++++.||+||+..||..|.|+
T Consensus        35 dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~   70 (70)
T 1taf_B           35 DVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence            355567788999999999999999999999999874

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=96.38  E-value=0.0046  Score=44.26  Aligned_cols=40  Identities=20%  Similarity=0.319  Sum_probs=36.6

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL   43 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~   43 (148)
                      +..++...++.|+.||..++++.+|+||+..||..|.+-+
T Consensus        54 l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~   93 (102)
T 1id3_B           54 VRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ   93 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            4567888999999999999999999999999999999864

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=96.34  E-value=0.009  Score=56.87  Aligned_cols=95  Identities=15%  Similarity=0.220  Sum_probs=79.7

Q ss_pred             CCCCChhHHHHHHHHhCCcccccccccccccccc-ccccCC------Ccccee--e--eccchHHHHHHHHHHHHHHHHH
Q psy17766         28 RSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT-KYTSSN------DTLSVL--V--LPINIKAMSIMNSFVNDIFERI   96 (148)
Q Consensus        28 k~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~-k~~sSk------yi~kvL--v--~~IS~kam~imnsfv~DiferI   96 (148)
                      ....|.-|++..|.-.+|+.+.++|+.++..+.. +...+.      .|++.|  .  ..|+..|..+|-..+.++-..|
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~pv~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~  141 (1049)
T 3ksy_A           62 AQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADI  141 (1049)
T ss_dssp             TCCCSHHHHHHHHHHHSCTTHHHHHHHHHHHHHTTCCCSSSCSSCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHhCCCchHHHHHHHHHHhhhcccccCCccccHHHHHHHhhcccccccCCCCcchhHHHHHHHHHHH
Confidence            6777899999999999999999999999876543 222221      356666  2  6788999999999999999999


Q ss_pred             HHHhchhhhccCCCccChHHHHHHHH
Q psy17766         97 AAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        97 a~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      .+-|++-++.+++..|++|+||.|++
T Consensus       142 l~la~~~~~~~~~~~i~p~~~~~ai~  167 (1049)
T 3ksy_A          142 LKLVGNYVRNIRHYEITKQDIKVAMC  167 (1049)
T ss_dssp             HHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCceecCcccccccc
Confidence            99999999999999999999999996

>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}

Probab=96.33  E-value=0.0042  Score=45.16  Aligned_cols=49  Identities=22%  Similarity=0.268  Sum_probs=46.7

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..+|.+++.-|.-++.+.++.|+.++..++++.+|+||+..||..|+|-
T Consensus        38 ~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr   86 (107)
T 3b0b_B           38 VLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR   86 (107)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence            4689999999999999999999999999999999999999999999984

>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A

Probab=96.30  E-value=0.0047  Score=45.43  Aligned_cols=49  Identities=16%  Similarity=0.280  Sum_probs=46.6

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..+|.+++.-|.-++.+.++.|+.++..+|+..||+||++.||..++|-
T Consensus        46 ~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr   94 (113)
T 4dra_A           46 MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR   94 (113)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence            4599999999999999999999999999999999999999999999883

>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.0048  Score=43.55  Aligned_cols=49  Identities=6%  Similarity=0.121  Sum_probs=46.2

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..+|..++.-|.-++.+.++.|+.++..+|+..+|+||++.||..++|-
T Consensus        31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr   79 (90)
T 3v9r_A           31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK   79 (90)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            4589999999999999999999999999999999999999999999873

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=96.22  E-value=0.01  Score=41.21  Aligned_cols=49  Identities=14%  Similarity=0.213  Sum_probs=45.3

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..+++.|+.-+.--..+..-.+.++|-..|.+.||.||.++|||-|.|+
T Consensus        26 ~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ri   74 (82)
T 3nqj_A           26 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI   74 (82)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999996

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=96.19  E-value=0.0095  Score=40.94  Aligned_cols=49  Identities=22%  Similarity=0.248  Sum_probs=45.2

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..+++.|+.-|.--..+....+.+++-.++.+.||.||.++|||-|.|+
T Consensus        24 ~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri   72 (77)
T 2hue_B           24 LRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI   72 (77)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence            4678999999999999999999999999999999999999999999985

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B

Probab=96.14  E-value=0.005  Score=42.37  Aligned_cols=40  Identities=15%  Similarity=0.257  Sum_probs=36.0

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL   43 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~   43 (148)
                      +...+...++.|+.||..++++.+|+|++..||..|.+-.
T Consensus        36 l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~   75 (84)
T 2hue_C           36 TRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   75 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            4567888999999999999999999999999999998853

>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A

Probab=95.99  E-value=0.009  Score=45.41  Aligned_cols=49  Identities=22%  Similarity=0.258  Sum_probs=46.9

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      +.+|..++.-|.-++.+.++.|+.++..+|+..+|+||++.||..++|-
T Consensus        38 ~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr   86 (140)
T 3vh5_A           38 VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR   86 (140)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            5799999999999999999999999999999999999999999999984

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B

Probab=95.81  E-value=0.017  Score=42.85  Aligned_cols=50  Identities=20%  Similarity=0.240  Sum_probs=47.5

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      ..||+.|...|.-...-+...|+.+|...+...+|+||+..||..|+.-+
T Consensus        27 ~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l   76 (128)
T 2byk_B           27 ASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL   76 (128)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred             ceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence            67999999999999999999999999999999999999999999999854

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T

Probab=95.71  E-value=0.015  Score=42.21  Aligned_cols=39  Identities=13%  Similarity=0.283  Sum_probs=36.2

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      +..++.+.++.|+.+|..++++.+|+||+..||..|+|-
T Consensus        33 l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr   71 (111)
T 3b0c_T           33 VEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR   71 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence            566788899999999999999999999999999999985

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A

Probab=95.47  E-value=0.022  Score=40.84  Aligned_cols=49  Identities=22%  Similarity=0.234  Sum_probs=44.8

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..+++.|+.-|.--..+.+-.+.++|-.+|.+.||.||.++|||-|.|+
T Consensus        51 ~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri   99 (100)
T 2yfv_A           51 LRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI   99 (100)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence            4678999999998888999999999999999999999999999999885

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C

Probab=95.41  E-value=0.021  Score=42.02  Aligned_cols=36  Identities=25%  Similarity=0.230  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      .+-.+...|.+.|.+.++.+++.+|++++||.|++-
T Consensus        52 vLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n   87 (120)
T 2f8n_G           52 VLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN   87 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence            344455566667778888999999999999999993

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A

Probab=95.30  E-value=0.029  Score=42.24  Aligned_cols=49  Identities=8%  Similarity=0.064  Sum_probs=46.2

Q ss_pred             eeccchHHHHHHHHHHHHHHHHHHHHhchhh-hccCCCccChHHHHHHHH
Q psy17766         74 VLPINIKAMSIMNSFVNDIFERIAAESSRLA-HYNKRSTITSREIQTAVR  122 (148)
Q Consensus        74 v~~IS~kam~imnsfv~DiferIa~EA~~La-~~~kr~Tlt~reIqtAvr  122 (148)
                      +..||..|.-++.-...-+...|+.+|...+ +.+||+||+.++|..||+
T Consensus        35 v~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~   84 (140)
T 2byk_A           35 TGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN   84 (140)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence            3779999999999999999999999999999 999999999999999997

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=95.24  E-value=0.036  Score=38.42  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=33.0

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR   41 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr   41 (148)
                      +..........|+.+|...|...+|+||+.+||+.|++
T Consensus        36 l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~   73 (93)
T 1n1j_A           36 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS   73 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            34445567788999999999999999999999999998

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*

Probab=95.22  E-value=0.026  Score=41.69  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      .+-.+...|.+.|.+.++.+++.+|++++||.|++-
T Consensus        53 vLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n   88 (123)
T 2nqb_C           53 VMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN   88 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence            344555566667777888999999999999999993

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A

Probab=95.18  E-value=0.033  Score=42.29  Aligned_cols=49  Identities=14%  Similarity=0.185  Sum_probs=44.8

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         76 PINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        76 ~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      .+++.|+..|.--..+.+-.+.++|-.+|...||.||.++|||.|.|+-
T Consensus        85 Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir  133 (140)
T 3nqu_A           85 NWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR  133 (140)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence            5788999999888899999999999999999999999999999999973

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=95.17  E-value=0.027  Score=42.04  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      .+-.+...|.+.|.+.++.+++.+|++++||.|++-
T Consensus        55 vLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n   90 (131)
T 1id3_C           55 VLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN   90 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence            344455566666778888999999999999999993

>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=95.14  E-value=0.051  Score=36.36  Aligned_cols=40  Identities=15%  Similarity=0.228  Sum_probs=35.6

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL   43 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~   43 (148)
                      |.-|....-..|+.+|..++.+.+|+||+..||+.|++..
T Consensus        27 L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~   66 (68)
T 1taf_A           27 LLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence            4567778888899999999999999999999999999864

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...

Probab=95.04  E-value=0.031  Score=41.60  Aligned_cols=36  Identities=25%  Similarity=0.308  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      .+-.+...|.+.|.+.++.+++.+|++++||.|++-
T Consensus        55 vLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n   90 (129)
T 1tzy_A           55 VLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN   90 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence            344455566666777888999999999999999993

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=95.01  E-value=0.043  Score=43.08  Aligned_cols=49  Identities=12%  Similarity=0.276  Sum_probs=46.8

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..||..|...|.-.+..+...|+.||..+|...+|+||+..||-.|+.-
T Consensus        32 ~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~   80 (179)
T 1jfi_B           32 VRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES   80 (179)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence            5799999999999999999999999999999999999999999999873

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}

Probab=94.99  E-value=0.032  Score=43.04  Aligned_cols=49  Identities=14%  Similarity=0.213  Sum_probs=44.8

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..+++.|+..|---..+.+-.+.++|-.+|...||.||.++|||.|.|+
T Consensus       100 lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI  148 (156)
T 3r45_A          100 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI  148 (156)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred             ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence            3578899999998889999999999999999999999999999999996

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1

Probab=94.91  E-value=0.034  Score=41.34  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          8 VNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         8 v~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      +-.+...|.+.|.+.++.+++.+|++|+||.|++-
T Consensus        59 LEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n   93 (128)
T 1f66_C           59 LEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG   93 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence            34445556666777788899999999999999995

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1

Probab=94.86  E-value=0.035  Score=42.39  Aligned_cols=36  Identities=25%  Similarity=0.308  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      .+-.+...|.+.|.+.++.+++.+|++++||.|++-
T Consensus        74 VLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n  109 (149)
T 2f8n_K           74 VLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN  109 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence            344455566666777888999999999999999994

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...

Probab=94.82  E-value=0.047  Score=41.15  Aligned_cols=49  Identities=22%  Similarity=0.245  Sum_probs=46.0

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..+++.|+.-|.--..+.+..+.+++..++.+.||.||.++|||.|.|+
T Consensus        83 ~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri  131 (136)
T 1tzy_C           83 LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI  131 (136)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence            5789999999999999999999999999999999999999999999986

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=94.71  E-value=0.045  Score=37.94  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766         10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE   47 (148)
Q Consensus        10 Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge   47 (148)
                      +..-.+.++|..++.+.||.||.++|||-|.|+  -||
T Consensus        42 ~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ri--rg~   77 (82)
T 3nqj_A           42 AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI--RGL   77 (82)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH--HC-
T ss_pred             HHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHH--ccc
Confidence            344455568888999999999999999999997  455

>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}

Probab=94.50  E-value=0.065  Score=39.66  Aligned_cols=39  Identities=21%  Similarity=0.341  Sum_probs=35.7

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      +...+.+.++.|+.+|..++.+.+|+|+|..||.-|.+.
T Consensus        73 ~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr  111 (121)
T 2ly8_A           73 VRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR  111 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence            456788899999999999999999999999999999885

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=94.38  E-value=0.048  Score=37.39  Aligned_cols=36  Identities=31%  Similarity=0.365  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766         10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE   47 (148)
Q Consensus        10 Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge   47 (148)
                      +....+.+++..++.+.||.||.++|||-|.|+  -||
T Consensus        40 aylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri--rg~   75 (77)
T 2hue_B           40 AYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI--RGE   75 (77)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH--TTC
T ss_pred             HHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH--hCc
Confidence            344456678889999999999999999999996  554

>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}

Probab=94.26  E-value=0.042  Score=39.82  Aligned_cols=40  Identities=28%  Similarity=0.294  Sum_probs=36.3

Q ss_pred             hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      .+.-|+.+.++.|+.++..++++.+|+||+..||..|+|-
T Consensus        47 aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr   86 (107)
T 3b0b_B           47 AISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR   86 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence            3556788899999999999999999999999999999885

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=94.12  E-value=0.063  Score=37.65  Aligned_cols=34  Identities=18%  Similarity=0.193  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          9 NDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         9 ~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      --+.+.|+.+|...++.+||+||+.+||+.|++-
T Consensus        51 E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~   84 (97)
T 1n1j_B           51 QIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK   84 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhc
Confidence            3445678999999999999999999999999974

>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}

Probab=94.05  E-value=0.051  Score=38.22  Aligned_cols=39  Identities=8%  Similarity=0.140  Sum_probs=35.0

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      +-.++.+.++.|+.++..+|++.+|+||+..||..++|-
T Consensus        41 L~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr   79 (90)
T 3v9r_A           41 LLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK   79 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            456778888999999999999999999999999999874

>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A

Probab=93.71  E-value=0.061  Score=39.42  Aligned_cols=40  Identities=20%  Similarity=0.276  Sum_probs=36.1

Q ss_pred             hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      -+..++.+.++.|+.++..+|++.||+||+..||..++|-
T Consensus        55 aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr   94 (113)
T 4dra_A           55 AISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR   94 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence            3556788999999999999999999999999999999874

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=93.19  E-value=0.066  Score=39.00  Aligned_cols=32  Identities=22%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766         11 IFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus        11 iferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      +...|+.+|...|+.+||+||+++||+.||+-
T Consensus        75 Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~  106 (119)
T 4g92_C           75 FITELTMRAWIHAEDNKRRTLQRSDIAAALSK  106 (119)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcccCccCHHHHHHHHhc
Confidence            34678899999999999999999999999973

>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A

Probab=93.16  E-value=0.1  Score=39.61  Aligned_cols=40  Identities=28%  Similarity=0.282  Sum_probs=36.5

Q ss_pred             hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      -+..++.+.++.|+.++..++++.+|+||+..||..++|-
T Consensus        47 aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr   86 (140)
T 3vh5_A           47 AISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR   86 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            3556788999999999999999999999999999999984

>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3

Probab=93.01  E-value=0.2  Score=34.18  Aligned_cols=48  Identities=17%  Similarity=0.323  Sum_probs=43.4

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..+...+-..+-.+.+|+.+.+++.|++||++.|-.||..+|||....
T Consensus        22 ~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le   69 (76)
T 1h3o_B           22 EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE   69 (76)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence            467888888999999999999999999999999999999999997654

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A

Probab=92.78  E-value=0.1  Score=37.33  Aligned_cols=32  Identities=28%  Similarity=0.331  Sum_probs=26.9

Q ss_pred             HHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766         11 IFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus        11 iferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      ..-.+.++|..++.+.||.||.++|||-|.|+
T Consensus        68 yLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri   99 (100)
T 2yfv_A           68 YLVGLLEHTNLLALHAKRITIMRKDMQLARRI   99 (100)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence            33445567889999999999999999999885

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=92.74  E-value=0.036  Score=39.07  Aligned_cols=33  Identities=12%  Similarity=0.318  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766         10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus        10 Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      -+.+.|+.+|.+.++.++|+||+++||+.||+-
T Consensus        44 ~Fi~el~~~A~~~a~~~krktI~~~di~~av~~   76 (98)
T 1jfi_A           44 LFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL   76 (98)
T ss_dssp             HHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence            345678899999999999999999999999874

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A

Probab=92.09  E-value=0.15  Score=38.55  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766         10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus        10 Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      +..-.+.++|..++.+.||.||.++|||-|.|+
T Consensus       100 ayLv~LFEdanlcAiHAkRVTIm~kDiqLArri  132 (140)
T 3nqu_A          100 AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI  132 (140)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcccccHHHHHHHHHh
Confidence            445556668888999999999999999999997

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}

Probab=91.75  E-value=0.16  Score=39.07  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766          9 NDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE   47 (148)
Q Consensus         9 ~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge   47 (148)
                      -+..-.+.++|..+|.+.||.||.++|||-|.|+  -||
T Consensus       115 EayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI--rg~  151 (156)
T 3r45_A          115 EAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI--RGL  151 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH--HHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH--ccc
Confidence            3455556668888999999999999999999997  454

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B

Probab=91.59  E-value=0.35  Score=35.63  Aligned_cols=38  Identities=21%  Similarity=0.230  Sum_probs=32.9

Q ss_pred             HhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          5 NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         5 nsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      .....-+...|+.+|..+|...+|+||+..||-.|+.-
T Consensus        38 ~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~   75 (128)
T 2byk_B           38 ARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTE   75 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence            34445567789999999999999999999999999986

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}

Probab=91.17  E-value=0.33  Score=39.57  Aligned_cols=40  Identities=20%  Similarity=0.319  Sum_probs=36.0

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL   43 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~   43 (148)
                      +...+.+..+.|+.+|..++.+.+|+|+|+.||.-|++..
T Consensus       187 lr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~  226 (235)
T 2l5a_A          187 VRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ  226 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence            4567788999999999999999999999999999999853

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...

Probab=90.88  E-value=0.25  Score=37.17  Aligned_cols=34  Identities=26%  Similarity=0.301  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          9 NDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         9 ~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      -+....+.+++..++.+.||.||.++|||-|.|+
T Consensus        98 EayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri  131 (136)
T 1tzy_C           98 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI  131 (136)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence            3455567778999999999999999999999996

>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3

Probab=90.63  E-value=0.42  Score=32.56  Aligned_cols=37  Identities=22%  Similarity=0.388  Sum_probs=30.5

Q ss_pred             HhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766          5 NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR   41 (148)
Q Consensus         5 nsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr   41 (148)
                      -.+..|+.+.++..|++||++.|..||..+|||....
T Consensus        33 l~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le   69 (76)
T 1h3o_B           33 LQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE   69 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence            3455666677788899999999999999999997654

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=89.70  E-value=0.57  Score=36.67  Aligned_cols=39  Identities=13%  Similarity=0.303  Sum_probs=34.1

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      |......+...|+.||..+|...+|+||+..||-.|+.-
T Consensus        42 l~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~   80 (179)
T 1jfi_B           42 VVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES   80 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence            455666777889999999999999999999999999884

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A

Probab=86.13  E-value=0.65  Score=34.77  Aligned_cols=32  Identities=6%  Similarity=0.074  Sum_probs=28.4

Q ss_pred             HHHHHHHHHhHHH-hhcCCCCCChhHHHHHHHH
Q psy17766         11 IFERIAAESSRLA-HYNKRSTITSREIQTAVRL   42 (148)
Q Consensus        11 iferia~Ea~~L~-~~~kk~Tlt~reiqtAvrl   42 (148)
                      +...|+.+|...+ +.+||+||+.++|..||+-
T Consensus        53 FI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~   85 (140)
T 2byk_A           53 FVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNK   85 (140)
T ss_dssp             HHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhc
Confidence            3456899999999 9999999999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d1tzyb_	92	a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus)	2e-37
d1tzyb_	92	a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus)	5e-36
d1f1ea_	151	a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy	1e-20
d1f1ea_	151	a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy	5e-13
d1q9ca_	172	a.22.1.3 (A:) Histone domain of Son of sevenless p	4e-13
d1q9ca_	172	a.22.1.3 (A:) Histone domain of Son of sevenless p	1e-11

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 92

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score =  121 bits (304), Expect = 2e-37
 Identities = 66/71 (92%), Positives = 68/71 (95%)

Query: 77  INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
           I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 22  ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 81

Query: 137 GTKAVTKYTSS 147
           GTKAVTKYTSS
Sbjct: 82  GTKAVTKYTSS 92

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 92

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score =  117 bits (295), Expect = 5e-36
 Identities = 63/66 (95%), Positives = 64/66 (96%)

Query: 1  MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
          M IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 27 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 86

Query: 61 TKYTSS 66
          TKYTSS
Sbjct: 87 TKYTSS 92

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

 Score = 80.2 bits (198), Expect = 1e-20
 Identities = 18/131 (13%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 1   MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
              +  FV  + E +A  +  +   + + T+    ++    +L+   +  +      +A 
Sbjct: 25  KDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGELFGRAT 84

Query: 61  TKYTSSNDTLSVLVLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTA 120
            +           +   +  A+ + N  +    E +  +++  A  + R T+   +++ A
Sbjct: 85  VRRILKRAG----IERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKA 140

Query: 121 VRLLLP--GEL 129
           +   +P  GEL
Sbjct: 141 ITYSMPKGGEL 151

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

 Score = 60.2 bits (146), Expect = 5e-13
 Identities = 8/64 (12%), Positives = 24/64 (37%)

Query: 80  KAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK 139
            A   +  FV  + E +A  +  +   + + T+    ++    +L+   +  +      +
Sbjct: 23  DAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGELFGR 82

Query: 140 AVTK 143
           A  +
Sbjct: 83  ATVR 86

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 4e-13
 Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 29/137 (21%)

Query: 1   MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
           +  +   +  +   +     R          ++ +++  V+   P  + K A+++   A+
Sbjct: 40  LQYVEELILQLLNMLCQAQPR----------SASDVEERVQKSFPHPIDKWAIADAQSAI 89

Query: 61  TKYTSSNDTLSVLVLP---------------INIKAMSIMNSFVNDIFERIAAESSRLAH 105
            K    N     L LP               I+ +    + + +  I   I   +     
Sbjct: 90  EKRKRRNP----LSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVR 145

Query: 106 YNKRSTITSREIQTAVR 122
             +   IT ++I+ A+ 
Sbjct: 146 NIRHYEITKQDIKVAMC 162

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 1e-11
 Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 75  LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 134
           L  N  A+  +   +  +   +     R          ++ +++  V+   P  + K A+
Sbjct: 33  LESNDDALQYVEELILQLLNMLCQAQPR----------SASDVEERVQKSFPHPIDKWAI 82

Query: 135 SEGTKAVTKYTS 146
           ++   A+ K   
Sbjct: 83  ADAQSAIEKRKR 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1tzyb_	92	Histone H2B {Chicken (Gallus gallus), erythrocytes	100.0
d1tzyb_	92	Histone H2B {Chicken (Gallus gallus), erythrocytes	100.0
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	99.86
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	99.59
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	99.36
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	99.22
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	97.8
d1ku5a_	66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	97.48
d2huec1	82	Histone H4 {African clawed frog (Xenopus laevis) [	97.4
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	96.9
d1jfia_	66	Negative cofactor 2, NC2, alpha chain {Human (Homo	96.86
d1n1ja_	87	Nuclear transcription factor Y subunit beta (Nf-Yb	96.65
d1tzya_	106	Histone H2A {Chicken (Gallus gallus), erythrocytes	96.56
d1n1jb_	78	Nuclear transcription factor Y subunit gamma (Nf-Y	96.52
d1u35c1	106	macro-H2A.1, histone domain {Human (Homo sapiens)	96.51
d2huec1	82	Histone H4 {African clawed frog (Xenopus laevis) [	96.43
d2bykb1	89	Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax	96.35
d1f66c_	103	Histone H2A {Human (Homo sapiens), variant H2A.Z [	96.33
d1ku5a_	66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	96.09
d1jfib_	135	Negative cofactor 2, NC2, beta chain {Human (Homo	95.41
d1tafb_	70	TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta	94.9
d1tafb_	70	TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta	94.54
d1tzyc_	95	Histone H3 {Chicken (Gallus gallus), erythrocytes	94.53
d1tzya_	106	Histone H2A {Chicken (Gallus gallus), erythrocytes	94.0
d1n1ja_	87	Nuclear transcription factor Y subunit beta (Nf-Yb	93.58
d1jfia_	66	Negative cofactor 2, NC2, alpha chain {Human (Homo	93.09
d1u35c1	106	macro-H2A.1, histone domain {Human (Homo sapiens)	92.38
d2bykb1	89	Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax	91.77
d1n1jb_	78	Nuclear transcription factor Y subunit gamma (Nf-Y	91.62
d1h3ob_	74	TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom	91.26
d2byka1	72	Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax	91.2
d1tzyc_	95	Histone H3 {Chicken (Gallus gallus), erythrocytes	90.75
d1jfib_	135	Negative cofactor 2, NC2, beta chain {Human (Homo	89.58
d1f66c_	103	Histone H2A {Human (Homo sapiens), variant H2A.Z [	89.47
d1h3ob_	74	TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom	86.91

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=100.00  E-value=4e-44  Score=256.04  Aligned_cols=85  Identities=82%  Similarity=0.998  Sum_probs=82.0

Q ss_pred             cccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhhh
Q psy17766         63 YTSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG  137 (148)
Q Consensus        63 ~~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~eg  137 (148)
                      -.++.||||||  |   +|||++||+||||||||||||||.||++|++++||+|||+||||+||||+|||||+||||+||
T Consensus         3 esy~~Yi~kVLKqVhp~~giS~kam~imnsfvndiferIa~EA~~La~~~kr~TitsreIqtAvrL~LPgeLaKhAvseG   82 (92)
T d1tzyb_           3 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG   82 (92)
T ss_dssp             CCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHCcHHHHHHHHHHH
Confidence            45678999999  6   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccccC
Q psy17766        138 TKAVTKYTSS  147 (148)
Q Consensus       138 ~kav~~~~~~  147 (148)
                      +|||++|++|
T Consensus        83 tkAv~ky~ss   92 (92)
T d1tzyb_          83 TKAVTKYTSS   92 (92)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHhccC
Confidence            9999999976

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=100.00  E-value=2.1e-35  Score=210.56  Aligned_cols=66  Identities=95%  Similarity=1.233  Sum_probs=64.4

Q ss_pred             CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccC
Q psy17766          1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS   66 (148)
Q Consensus         1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sS   66 (148)
                      |+||||||||||||||.||++|++|+||+|||+||||+||||+|||||+|||++||+|||++|++|
T Consensus        27 m~imnsfvndiferIa~EA~~La~~~kr~TitsreIqtAvrL~LPgeLaKhAvseGtkAv~ky~ss   92 (92)
T d1tzyb_          27 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS   92 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccC
Confidence            689999999999999999999999999999999999999999999999999999999999999875

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.86  E-value=1.4e-22  Score=153.87  Aligned_cols=121  Identities=15%  Similarity=0.288  Sum_probs=107.9

Q ss_pred             CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccCCCcccee----eec
Q psy17766          1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSNDTLSVL----VLP   76 (148)
Q Consensus         1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sSkyi~kvL----v~~   76 (148)
                      |.+||+|++|+|++|+.||..++.+++|+||+++|||.|+++++||++.+|+-..       |+. .+|.|.+    +..
T Consensus        25 ~~~l~~~~~~~~~~Ia~eA~~l~~~~~rKTi~~edi~~a~~~~~~~~~~~~~~~~-------fp~-a~IkRi~k~~g~~r   96 (151)
T d1f1ea_          25 KDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGEL-------FGR-ATVRRILKRAGIER   96 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTCCSCC-------CCH-HHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccccccccCc-------cCH-HHHHHHHHcCCcch
Confidence            4689999999999999999999999999999999999999999999999885221       221 1333444    378


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCc--hHH
Q psy17766         77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP--GEL  129 (148)
Q Consensus        77 IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lp--geL  129 (148)
                      ||+.|...|...+.+++..|+.+|...+.++||.||+++||+.||+..+|  |||
T Consensus        97 is~dA~~~l~~~~E~fi~~l~~~A~~~a~~~kRkTI~~~DI~~Av~~~~~~~~~~  151 (151)
T d1f1ea_          97 ASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPKGGEL  151 (151)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGGGGCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHcCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999  886

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.7e-16  Score=120.53  Aligned_cols=111  Identities=14%  Similarity=0.251  Sum_probs=96.6

Q ss_pred             chhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccCC-------Ccccee-
Q psy17766          2 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSN-------DTLSVL-   73 (148)
Q Consensus         2 ~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sSk-------yi~kvL-   73 (148)
                      .+||+|++|+|++|+          .+.+.|.+|||.+|+++|||++.|||++++.++..+...-.       .|+|.| 
T Consensus        41 ~~i~~~i~~ll~~L~----------~~~p~sv~dVe~~v~~~fp~~i~~~ai~~a~~~~~srs~ragL~fPV~rv~rlLk  110 (172)
T d1q9ca_          41 QYVEELILQLLNMLC----------QAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLK  110 (172)
T ss_dssp             HHHHHHHHHHHHHHH----------TTCCCSTTHHHHHHHHSSCTTHHHHHHHHHHHHHC--------CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----------ccCCccHHHHHHHHHHhCCchHHHHHHHHHHHHHhccccccCceecHHHHHHHHH
Confidence            579999999999995          47788999999999999999999999999999886554321       355655 


Q ss_pred             -e--eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         74 -V--LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        74 -v--~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                       .  ..||+.|-..|-..+.++-..|.+.|++.++.+||.+||++||+.|++
T Consensus       111 ~~~a~RVs~~A~vyLaavLEyl~aeILelAgn~a~~~krkrItp~dI~lAi~  162 (172)
T d1q9ca_         111 EVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMC  162 (172)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBCCHHHHHHHHH
T ss_pred             hccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCceecHHHHHHHHh
Confidence             2  889999999999999999999999999999999999999999999998

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.36  E-value=1.1e-13  Score=104.16  Aligned_cols=65  Identities=11%  Similarity=0.172  Sum_probs=60.9

Q ss_pred             cccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhH
Q psy17766         69 TLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHA  133 (148)
Q Consensus        69 i~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhA  133 (148)
                      |+|++  +   .+||..||.+|++|++|+|++|+.||..++.+++|+||+++|||.|+++++||++.+|+
T Consensus         7 I~rilk~~~~~~ris~da~~~l~~~~~~~~~~Ia~eA~~l~~~~~rKTi~~edi~~a~~~~~~~~~~~~~   76 (151)
T d1f1ea_           7 IERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYD   76 (151)
T ss_dssp             HHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTCC
T ss_pred             HHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccccccc
Confidence            45666  3   88999999999999999999999999999999999999999999999999999998885

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.4e-12  Score=98.53  Aligned_cols=68  Identities=16%  Similarity=0.289  Sum_probs=61.3

Q ss_pred             CCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhhhhhhh
Q psy17766         67 NDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV  141 (148)
Q Consensus        67 kyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~eg~kav  141 (148)
                      .+|+|||  |   +||+.+|+.+||+|++++|++|+          .+.+.|.+|||.+|+++|||+|.|||++++.++.
T Consensus        20 ~~i~KVl~qvhP~l~i~~~Al~~i~~~i~~ll~~L~----------~~~p~sv~dVe~~v~~~fp~~i~~~ai~~a~~~~   89 (172)
T d1q9ca_          20 PALKKVQGQVHPTLESNDDALQYVEELILQLLNMLC----------QAQPRSASDVEERVQKSFPHPIDKWAIADAQSAI   89 (172)
T ss_dssp             HHHHHHHHHHCSSSBCCHHHHHHHHHHHHHHHHHHH----------TTCCCSTTHHHHHHHHSSCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHH----------ccCCccHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            4689999  5   99999999999999999999996          4668899999999999999999999999999988


Q ss_pred             hcc
Q psy17766        142 TKY  144 (148)
Q Consensus       142 ~~~  144 (148)
                      .+.
T Consensus        90 ~sr   92 (172)
T d1q9ca_          90 EKR   92 (172)
T ss_dssp             C--
T ss_pred             hcc
Confidence            653

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=97.80  E-value=1.9e-05  Score=50.69  Aligned_cols=49  Identities=24%  Similarity=0.326  Sum_probs=47.0

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..||..+...+......+++.|+.+|...+...||+||++.||..|++.
T Consensus        19 ~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk~   67 (68)
T d1htaa_          19 ERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM   67 (68)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHT
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHh
Confidence            5699999999999999999999999999999999999999999999985

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

Probab=97.48  E-value=8.1e-05  Score=47.45  Aligned_cols=48  Identities=17%  Similarity=0.321  Sum_probs=45.9

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..||+.|...+.-....+++.|+.+|...+...+|+||++.||..|++
T Consensus        18 ~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al~   65 (66)
T d1ku5a_          18 ERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   65 (66)
T ss_dssp             SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence            468999999999999999999999999999999999999999999985

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.40  E-value=6.8e-05  Score=50.31  Aligned_cols=49  Identities=14%  Similarity=0.165  Sum_probs=46.6

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..||..+..-+...+.+.++.|+.+|..++++.+|+|+|+.||..|.+-
T Consensus        25 ~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr   73 (82)
T d2huec1          25 KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR   73 (82)
T ss_dssp             CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHh
Confidence            6799999999999999999999999999999999999999999999873

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=96.90  E-value=0.00086  Score=42.51  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=34.9

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      +.......++.|+.+|...+.+.||+||++.||..|++.
T Consensus        29 l~~~~e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk~   67 (68)
T d1htaa_          29 LAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHh
Confidence            455667788899999999999999999999999999985

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00035  Score=44.44  Aligned_cols=47  Identities=9%  Similarity=0.199  Sum_probs=42.0

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV  121 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAv  121 (148)
                      ..||+.|...|......+...|+++|...++.+||+||+++||..||
T Consensus        19 ~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krktI~~~dl~~ai   65 (66)
T d1jfia_          19 GKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCI   65 (66)
T ss_dssp             CCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTC
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHh
Confidence            68999999999999999999999999999999999999999998876

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0018  Score=43.04  Aligned_cols=50  Identities=28%  Similarity=0.312  Sum_probs=47.6

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      ..||+.|...|......+...++.+|...+...+|+||++.||..|+.-+
T Consensus        20 ~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~~rKTI~~~dv~~Al~~~   69 (87)
T d1n1ja_          20 GKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTL   69 (87)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHc
Confidence            67999999999999999999999999999999999999999999999865

>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=96.56  E-value=0.0016  Score=45.59  Aligned_cols=48  Identities=21%  Similarity=0.251  Sum_probs=45.4

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..|++.|-.+|-..+.++-.+|.+-|.+-++.+|+..||||+||.|+|
T Consensus        29 ~rv~~~apVylaAVLEYLtaEiLELAgn~a~~~k~~rItPrhi~lAir   76 (106)
T d1tzya_          29 ERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR   76 (106)
T ss_dssp             SEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHHhhHHHHhcCCceecchhhhhccc
Confidence            678999999999999999999999999999999999999999999997

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0019  Score=41.90  Aligned_cols=49  Identities=16%  Similarity=0.147  Sum_probs=46.6

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      ..||+.|..++.-....+.+.++.+|...++..+|+||+++||..|++-
T Consensus        17 ~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~~   65 (78)
T d1n1jb_          17 KMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK   65 (78)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHhc
Confidence            6789999999999999999999999999999999999999999999974

>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0016  Score=45.64  Aligned_cols=48  Identities=25%  Similarity=0.256  Sum_probs=45.9

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..|++.|-.+|-..+.++...|.+-|.+-++.+|+..||||+||.|+|
T Consensus        28 ~rv~~~apVylaAVLEYL~aEILELAgn~a~~~k~~rItprhi~lair   75 (106)
T d1u35c1          28 YRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA   75 (106)
T ss_dssp             SEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCeeecchhhhccc
Confidence            578999999999999999999999999999999999999999999997

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.43  E-value=0.0013  Score=43.71  Aligned_cols=39  Identities=15%  Similarity=0.277  Sum_probs=35.6

Q ss_pred             hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      +...+.+.++.|+.||..++.+.+|+|+|..||..|.+-
T Consensus        35 l~~~l~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr   73 (82)
T d2huec1          35 TRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR   73 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHh
Confidence            456788999999999999999999999999999999873

>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.35  E-value=0.0038  Score=41.57  Aligned_cols=50  Identities=20%  Similarity=0.240  Sum_probs=47.2

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      ..||+.|...+.....-+...|+.+|...+..++|+||+..||..|+.-+
T Consensus        17 ~~iskeA~~~i~~aae~FI~~lt~~A~~~a~~~~rKtI~~~dv~~Al~~~   66 (89)
T d2bykb1          17 ASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL   66 (89)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHC
Confidence            67999999999999999999999999999999999999999999999854

>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]

Probab=96.33  E-value=0.0025  Score=44.22  Aligned_cols=54  Identities=19%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHH
Q psy17766         76 PINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK  131 (148)
Q Consensus        76 ~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLak  131 (148)
                      .|+..|--.|...+.++..+|.+-|.+-++.+|+..||||+||-|++  =-.||.+
T Consensus        30 rv~~~A~VyLaAvLEYL~aEILelagn~a~~~~~~rItpr~l~lai~--nD~EL~~   83 (103)
T d1f66c_          30 RVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR--GDEELDS   83 (103)
T ss_dssp             EECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH--HSHHHHH
T ss_pred             ecCCCceeeHHHHHHHHHHHHHHHhhhhhccCCCCeeechhhhcccc--CcHHHHH
Confidence            38999999999999999999999999999999999999999999998  2335443

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

Probab=96.09  E-value=0.0035  Score=39.44  Aligned_cols=39  Identities=18%  Similarity=0.387  Sum_probs=34.7

Q ss_pred             hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766          3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR   41 (148)
Q Consensus         3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr   41 (148)
                      .+......+++.|+.+|...+.+.+|+||+..||..|++
T Consensus        27 ~l~~a~e~Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al~   65 (66)
T d1ku5a_          27 VLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   65 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence            355667788899999999999999999999999999975

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.015  Score=41.41  Aligned_cols=50  Identities=14%  Similarity=0.298  Sum_probs=47.3

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      ..||+.|...|.-...-+...|+.+|...+...+|+||++.||..|+.-+
T Consensus        21 ~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~~RkTi~~~Dv~~Al~~~   70 (135)
T d1jfib_          21 VRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESL   70 (135)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHc
Confidence            67999999999999999999999999999999999999999999999854

>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)62
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.90  E-value=0.025  Score=36.68  Aligned_cols=48  Identities=17%  Similarity=0.324  Sum_probs=38.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766         76 PINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  123 (148)
Q Consensus        76 ~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl  123 (148)
                      .++-.+-..+-.=|.+=...|..||.+.++..||.+||..||..|.|+
T Consensus        23 ~l~de~a~~LA~DveYRl~eiiQeA~KFMrhskR~~Ltt~Did~ALkv   70 (70)
T d1tafb_          23 SLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHcC
Confidence            345555556666666667889999999999999999999999999875

>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)62
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.54  E-value=0.015  Score=37.85  Aligned_cols=30  Identities=20%  Similarity=0.534  Sum_probs=26.9

Q ss_pred             HHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766         13 ERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus        13 eria~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      ..|..||.+.++++||++||..||-.|.|+
T Consensus        41 ~eiiQeA~KFMrhskR~~Ltt~Did~ALkv   70 (70)
T d1tafb_          41 KRIVQDAAKFMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             HHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhccCcCcHHHHHHHHcC
Confidence            457889999999999999999999999874

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=94.53  E-value=0.033  Score=37.89  Aligned_cols=50  Identities=22%  Similarity=0.226  Sum_probs=46.1

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  124 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~  124 (148)
                      +.+++.|+..|-....+.+-.+-+.|...+.+.||.||+++|||-|.|+-
T Consensus        42 ~r~~~~Al~aLQea~E~yLv~lfeda~~~a~HakRvTl~~kD~~Larrir   91 (95)
T d1tzyc_          42 LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR   91 (95)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             CEeeHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcCCHHHHHHHHHHh
Confidence            67899999999999999999999999999999999999999999999863

>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=94.00  E-value=0.032  Score=38.71  Aligned_cols=36  Identities=33%  Similarity=0.506  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHhHHH----hhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLA----HYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L~----~~~kk~Tlt~reiqtAvrl   42 (148)
                      |+-.++|.++.|..+|+    +.+|+..||+|+||-|+|-
T Consensus        38 ylaAVLEYLtaEiLELAgn~a~~~k~~rItPrhi~lAirn   77 (106)
T d1tzya_          38 YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN   77 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhcCCceecchhhhhcccC
Confidence            66788888888876665    6699999999999999984

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.071  Score=34.82  Aligned_cols=38  Identities=32%  Similarity=0.414  Sum_probs=32.4

Q ss_pred             hHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766          6 SFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL   43 (148)
Q Consensus         6 sfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~   43 (148)
                      .........++.||...+...+|+||++.||..|++-+
T Consensus        32 ~a~e~Fi~~lt~~A~~~a~~~~rKTI~~~dv~~Al~~~   69 (87)
T d1n1ja_          32 ECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTL   69 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHc
Confidence            33444558899999999999999999999999999863

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.09  E-value=0.033  Score=34.77  Aligned_cols=33  Identities=9%  Similarity=0.300  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHH
Q psy17766          8 VNDIFERIAAESSRLAHYNKRSTITSREIQTAV   40 (148)
Q Consensus         8 v~Diferia~Ea~~L~~~~kk~Tlt~reiqtAv   40 (148)
                      .--+...|+.+|...++.+||+||+++||..|+
T Consensus        33 ~E~Fi~~l~~~A~~~a~~~krktI~~~dl~~ai   65 (66)
T d1jfia_          33 LELFLESLLKKACQVTQSRNAKTMTTSHLKQCI   65 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHTC---CBCHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHh
Confidence            344557788999999999999999999998875

>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.08  Score=36.56  Aligned_cols=36  Identities=33%  Similarity=0.440  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHhHH----HhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRL----AHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L----~~~~kk~Tlt~reiqtAvrl   42 (148)
                      |+-.+.|.++.|..+|    ++.+|+..|++|+||.|+|-
T Consensus        37 ylaAVLEYL~aEILELAgn~a~~~k~~rItprhi~lairn   76 (106)
T d1u35c1          37 YMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN   76 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCeeecchhhhcccC
Confidence            5566777777765555    56799999999999999985

>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.77  E-value=0.18  Score=32.96  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          9 NDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         9 ~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      .-....|+.+|...+..++|+||+..||..|+.-
T Consensus        32 e~FI~~lt~~A~~~a~~~~rKtI~~~dv~~Al~~   65 (89)
T d2bykb1          32 SVFAIFVTSSSTALAHKQNHKTITAKDILQTLTE   65 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence            3445678999999999999999999999999985

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.072  Score=33.94  Aligned_cols=33  Identities=18%  Similarity=0.192  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766         10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus        10 Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      -+.+.++.+|...++.++|+||+.+||..|++-
T Consensus        33 ~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~~   65 (78)
T d1n1jb_          33 IFITELTLRAWIHTEDNKRRTLQRNDIAMAITK   65 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHhc
Confidence            345788999999999999999999999999974

>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.15  Score=33.06  Aligned_cols=48  Identities=17%  Similarity=0.323  Sum_probs=41.6

Q ss_pred             eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766         75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  122 (148)
Q Consensus        75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr  122 (148)
                      ..+...+-..+-.+..|+.+.+..-|++||.+.|-.||..+|||.-..
T Consensus        20 ~~ld~~vee~ll~iADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le   67 (74)
T d1h3ob_          20 EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE   67 (74)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            467778888888888888889999999999999999999999997543

>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-16
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.20  E-value=0.23  Score=31.42  Aligned_cols=48  Identities=8%  Similarity=0.090  Sum_probs=39.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhchhhh-ccCCCccChHHHHHHHHh
Q psy17766         76 PINIKAMSIMNSFVNDIFERIAAESSRLAH-YNKRSTITSREIQTAVRL  123 (148)
Q Consensus        76 ~IS~kam~imnsfv~DiferIa~EA~~La~-~~kr~Tlt~reIqtAvrl  123 (148)
                      -||+.|.-++.--..-+.+.++.+|...+. .+++.||+..||-.||.-
T Consensus         9 ~is~ea~~lvskAtElFi~~L~~~a~~~a~~~~~~ktl~~~dl~~aV~~   57 (72)
T d2byka1           9 LITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNK   57 (72)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccHHHHHHHHcc
Confidence            478888888887777888899999987774 566689999999999863

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=90.75  E-value=0.12  Score=34.86  Aligned_cols=36  Identities=36%  Similarity=0.522  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccc
Q psy17766          7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL   48 (148)
Q Consensus         7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeL   48 (148)
                      |+-++||    .|..++.+.||.||+++|||-|.|+  -||-
T Consensus        59 yLv~lfe----da~~~a~HakRvTl~~kD~~Larri--rG~r   94 (95)
T d1tzyc_          59 YLVGLFE----DTNLCAIHAKRVTIMPKDIQLARRI--RGER   94 (95)
T ss_dssp             HHHHHHH----HHHHHHHHTTCSEECHHHHHHHHHH--HTCC
T ss_pred             HHHHHHH----HhHHHHHhcCCCcCCHHHHHHHHHH--hccC
Confidence            4445554    7888999999999999999999996  4653

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=0.34  Score=34.01  Aligned_cols=35  Identities=14%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766          8 VNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         8 v~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl   42 (148)
                      ..-+...|+.+|...|...+|+||++.||..|+.-
T Consensus        35 ~~~Fi~~lt~~A~~~a~~~~RkTi~~~Dv~~Al~~   69 (135)
T d1jfib_          35 CTEFIHLISSEANEICNKSEKKTISPEHVIQALES   69 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence            33455678999999999999999999999999986

>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]

Probab=89.47  E-value=0.25  Score=33.63  Aligned_cols=36  Identities=33%  Similarity=0.381  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHhHH----HhhcCCCCCChhHHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRL----AHYNKRSTITSREIQTAVRL   42 (148)
Q Consensus         7 fv~Diferia~Ea~~L----~~~~kk~Tlt~reiqtAvrl   42 (148)
                      |+..+.|.++.|..+|    ++.+|+..||+|+||-|++-
T Consensus        38 yLaAvLEYL~aEILelagn~a~~~~~~rItpr~l~lai~n   77 (103)
T d1f66c_          38 YSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG   77 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred             eHHHHHHHHHHHHHHHhhhhhccCCCCeeechhhhccccC
Confidence            4555666666665555    56799999999999999995

>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.91  E-value=0.52  Score=30.38  Aligned_cols=35  Identities=23%  Similarity=0.436  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766          7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR   41 (148)
Q Consensus         7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr   41 (148)
                      +..|+.+.+..-|++||++.|-.||..+|||.-..
T Consensus        33 iADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le   67 (74)
T d1h3ob_          33 IADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE   67 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            44455556667788999999999999999997654