Psyllid ID: psy17782

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
MDDHQVNGVLLAFPSPTPLGLESSSMADMFKYGCDDWWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEVARRDFINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEEAMVKGFLMNKE
ccccccccccccccccccccccccccccccccccccEEEEccccccccEEEEccccEEEEEcccccccccEEEccccccccEEEEEEEEEccccccEEEEcEEcccccccccccccccccccccEEEEEccEEEEccEEEccccccccccccEEEEEEEccccEEEEEEccccHHccccccccccccEEEEEEEEccccEEEEEEcccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccc
cccccHHHHHcccccccHHHHHHHcccccccccHcHHEccccccccccEEEEccccEEEEEccEEEcccccEEcccccccccEEEEEEEcccccccEEEEEEcccccccccccEEEEEcccccccccccccEEEccccccccccccccccccEEEEEEEccccEEEEEEcccEEEEEEccccccccccEEEEEEEccccEEEEEEcccccccHHHHHHHHHHHHcccccccccccccHHHHHHHcHHHHHHHHccc
mddhqvngvllafpsptplglesssmADMFKYgcddwwtwdrndkspdtklfgknhrtvnfhptwskgaagirgtrqlnngRYYWELATsqrlfgtsmmfgigtRKARIHQNAFINLIgkdehswglshkglifhggkfynytkpfpeneatriGVLFDGiagtlsfykdgeylGIAFQglqhvqeplypmICSTAVKTQISLEVARRDFINLQDRCRSIIIKTMnqadldlvklptpiRTYIEEAMVKGFLMNKE
MDDHQVNGVLLAFPSPTPLGLESSSMADMFKYGCDDWWTWDRNDKSpdtklfgknhrtvnfhptwskgaagiRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEVARRDFINLQDRCRSIIIktmnqadldlvklpTPIRTYIEEAMVKGFLMNKE
MDDHQVNGVLLAFPSPTPLGLESSSMADMFKYGCDDWWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEVARRDFINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEEAMVKGFLMNKE
********VLLA*************MADMFKYGCDDWWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEVARRDFINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEEAMVKGFL****
****Q*N*VLLAFPS***********ADMFKYGCDDWWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEVARRDFINLQDRCRSI******************IRTYIEEAMVKGFLMN**
MDDHQVNGVLLAFPSPTPLGLESSSMADMFKYGCDDWWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEVARRDFINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEEAMVKGFLMNKE
*******G*LLAFPSPTPLGLESSSMADMFKYGCDDWWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEVARRDFINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEEAMVKGFLMNKE
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDDHQVNGVLLAFPSPTPLGLESSSMADMFKYGCDDWWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEVARRDFINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEEAMVKGFLMNKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query256 2.2.26 [Sep-21-2011]
Q6PJ21355 SPRY domain-containing SO yes N/A 0.765 0.552 0.354 7e-30
Q571F5354 SPRY domain-containing SO yes N/A 0.765 0.553 0.359 1e-29
Q3MHZ2345 SPRY domain-containing SO yes N/A 0.765 0.568 0.359 1e-29
Q28DT9360 SPRY domain-containing SO no N/A 0.765 0.544 0.364 3e-29
Q5M9B1360 SPRY domain-containing SO N/A N/A 0.765 0.544 0.344 9e-28
Q96A44273 SPRY domain-containing SO no N/A 0.792 0.743 0.277 3e-15
Q8R5B6273 SPRY domain-containing SO no N/A 0.792 0.743 0.277 5e-15
Q5E9X6273 SPRY domain-containing SO no N/A 0.785 0.736 0.259 9e-14
Q9D5L7273 SPRY domain-containing SO no N/A 0.785 0.736 0.263 1e-13
Q96BD6273 SPRY domain-containing SO no N/A 0.785 0.736 0.259 1e-13
>sp|Q6PJ21|SPSB3_HUMAN SPRY domain-containing SOCS box protein 3 OS=Homo sapiens GN=SPSB3 PE=1 SV=2 Back     alignment and function desciption
 Score =  130 bits (328), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 118/203 (58%), Gaps = 7/203 (3%)

Query: 38  WTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTS 97
           W WD  +KS  T L   ++R V+FH  +S G A IRGT++L  G+++WE+  +  ++GT 
Sbjct: 105 WVWDDLNKSSAT-LLSCDNRKVSFHMEYSCGTAAIRGTKELGEGQHFWEIKMTSPVYGTD 163

Query: 98  MMFGIGTRKARI--HQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIG 155
           MM GIGT    +  +++ F +L+G+DE SWGLS+ GL+ H G   +++  F   + + IG
Sbjct: 164 MMVGIGTSDVDLDKYRHTFCSLLGRDEDSWGLSYTGLLHHKGDKTSFSSRF--GQGSIIG 221

Query: 156 VLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEVARRDFINLQD 215
           V  D   GTL+F+K+ + +G+A   LQ+ +   YPM+CSTA ++ + +  +     +LQ 
Sbjct: 222 VHLDTWHGTLTFFKNRKCIGVAATKLQNKR--FYPMVCSTAARSSMKVTRSCASATSLQY 279

Query: 216 RCRSIIIKTMNQADLDLVKLPTP 238
            C   + +    +   L  LP P
Sbjct: 280 LCCHRLRQLRPDSGDTLEGLPLP 302
May be a substrate recognition component of a SCF-like ECS (Elongin BC-CUL2/5-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Homo sapiens (taxid: 9606)
>sp|Q571F5|SPSB3_MOUSE SPRY domain-containing SOCS box protein 3 OS=Mus musculus GN=Spsb3 PE=2 SV=2 Back     alignment and function description
>sp|Q3MHZ2|SPSB3_BOVIN SPRY domain-containing SOCS box protein 3 OS=Bos taurus GN=SPSB3 PE=2 SV=1 Back     alignment and function description
>sp|Q28DT9|SPSB3_XENTR SPRY domain-containing SOCS box protein 3 OS=Xenopus tropicalis GN=spsb3 PE=2 SV=1 Back     alignment and function description
>sp|Q5M9B1|SPSB3_XENLA SPRY domain-containing SOCS box protein 3 OS=Xenopus laevis GN=spsb3 PE=2 SV=1 Back     alignment and function description
>sp|Q96A44|SPSB4_HUMAN SPRY domain-containing SOCS box protein 4 OS=Homo sapiens GN=SPSB4 PE=1 SV=1 Back     alignment and function description
>sp|Q8R5B6|SPSB4_MOUSE SPRY domain-containing SOCS box protein 4 OS=Mus musculus GN=Spsb4 PE=1 SV=1 Back     alignment and function description
>sp|Q5E9X6|SPSB1_BOVIN SPRY domain-containing SOCS box protein 1 OS=Bos taurus GN=SPSB1 PE=2 SV=1 Back     alignment and function description
>sp|Q9D5L7|SPSB1_MOUSE SPRY domain-containing SOCS box protein 1 OS=Mus musculus GN=Spsb1 PE=1 SV=1 Back     alignment and function description
>sp|Q96BD6|SPSB1_HUMAN SPRY domain-containing SOCS box protein 1 OS=Homo sapiens GN=SPSB1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
91083007250 PREDICTED: similar to SP555 CG14041-PA [ 0.890 0.912 0.606 3e-84
312377377 359 hypothetical protein AND_11339 [Anophele 0.843 0.601 0.617 3e-79
157107222337 hypothetical protein AaeL_AAEL014824 [Ae 0.851 0.646 0.621 1e-78
158299974291 AGAP009203-PA [Anopheles gambiae str. PE 0.847 0.745 0.614 4e-76
195161294292 GL26545 [Drosophila persimilis] gi|19847 0.906 0.794 0.564 1e-75
242017263253 SPRY domain-containing SOCS box protein, 0.886 0.897 0.552 3e-74
195472793303 GE11313 [Drosophila yakuba] gi|194174784 0.839 0.709 0.583 3e-74
194856472301 GG25044 [Drosophila erecta] gi|190660624 0.839 0.714 0.578 3e-74
195342636301 GM18519 [Drosophila sechellia] gi|194132 0.839 0.714 0.578 1e-73
195550881301 GD12021 [Drosophila simulans] gi|1942017 0.839 0.714 0.578 1e-73
>gi|91083007|ref|XP_974509.1| PREDICTED: similar to SP555 CG14041-PA [Tribolium castaneum] gi|270007024|gb|EFA03472.1| hypothetical protein TcasGA2_TC013469 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 139/229 (60%), Positives = 190/229 (82%), Gaps = 1/229 (0%)

Query: 21  LESSSMADMFKYGCDDWWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNN 80
           +ES  +    ++GCDD WTW+R ++SP+ +L+G N R  +FHP WS G AG+RGTR LNN
Sbjct: 1   MESEPVPQPLRHGCDDLWTWNRWERSPEVRLYGNNFRIAHFHPNWSSGTAGVRGTRVLNN 60

Query: 81  GRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFY 140
           GRY+WEL  S+R+FGTSMMFGIGT+KAR+H ++F NL+G+D+H WGLSHKGL++HGG++ 
Sbjct: 61  GRYFWELHISRRIFGTSMMFGIGTKKARLHADSFTNLLGEDDHGWGLSHKGLLWHGGRWT 120

Query: 141 NYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQ 200
           +YTKPF EN AT+IGVLFDGIAGTLS+YKD +YLG+AF+GL  V+EPLYP+ICSTA KT+
Sbjct: 121 HYTKPFRENMATKIGVLFDGIAGTLSYYKDEKYLGVAFRGLNEVKEPLYPIICSTAAKTE 180

Query: 201 ISLEVARRDFINLQDRCRSIIIKTM-NQADLDLVKLPTPIRTYIEEAMV 248
           + L+  +RDF+NLQDRCR++I+K + ++ DL+ + +PT IR+Y+ EA+V
Sbjct: 181 MYLDSMKRDFVNLQDRCRAVIVKRIRSKQDLEKLFVPTKIRSYLAEAIV 229

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|312377377|gb|EFR24217.1| hypothetical protein AND_11339 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|157107222|ref|XP_001649680.1| hypothetical protein AaeL_AAEL014824 [Aedes aegypti] gi|157117419|ref|XP_001658758.1| hypothetical protein AaeL_AAEL007953 [Aedes aegypti] gi|108868713|gb|EAT32938.1| AAEL014824-PA [Aedes aegypti] gi|108876086|gb|EAT40311.1| AAEL007953-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|158299974|ref|XP_319980.4| AGAP009203-PA [Anopheles gambiae str. PEST] gi|157013777|gb|EAA14720.5| AGAP009203-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|195161294|ref|XP_002021503.1| GL26545 [Drosophila persimilis] gi|198472506|ref|XP_001355958.2| GA12721 [Drosophila pseudoobscura pseudoobscura] gi|194103303|gb|EDW25346.1| GL26545 [Drosophila persimilis] gi|198139043|gb|EAL33017.2| GA12721 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|242017263|ref|XP_002429111.1| SPRY domain-containing SOCS box protein, putative [Pediculus humanus corporis] gi|212513975|gb|EEB16373.1| SPRY domain-containing SOCS box protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|195472793|ref|XP_002088683.1| GE11313 [Drosophila yakuba] gi|194174784|gb|EDW88395.1| GE11313 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|194856472|ref|XP_001968757.1| GG25044 [Drosophila erecta] gi|190660624|gb|EDV57816.1| GG25044 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195342636|ref|XP_002037906.1| GM18519 [Drosophila sechellia] gi|194132756|gb|EDW54324.1| GM18519 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195550881|ref|XP_002076125.1| GD12021 [Drosophila simulans] gi|194201774|gb|EDX15350.1| GD12021 [Drosophila simulans] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
FB|FBgn0260470301 SP555 "SP555" [Drosophila mela 0.839 0.714 0.578 2.9e-71
UNIPROTKB|F1P3A6357 SPSB3 "Uncharacterized protein 0.800 0.574 0.355 1.1e-30
ZFIN|ZDB-GENE-030131-4182358 spsb3a "splA/ryanodine recepto 0.761 0.544 0.362 1.8e-30
UNIPROTKB|Q3MHZ2345 SPSB3 "SPRY domain-containing 0.761 0.565 0.357 7.9e-30
UNIPROTKB|Q6PJ21355 SPSB3 "SPRY domain-containing 0.765 0.552 0.354 1.3e-29
MGI|MGI:1891471354 Spsb3 "splA/ryanodine receptor 0.636 0.460 0.401 1.6e-29
UNIPROTKB|F1PYM3354 SPSB3 "Uncharacterized protein 0.679 0.491 0.379 3.1e-28
RGD|1310936381 Spsb3 "splA/ryanodine receptor 0.363 0.244 0.427 9.7e-28
FB|FBgn0036549342 CG10516 [Drosophila melanogast 0.675 0.505 0.355 2.9e-23
UNIPROTKB|F1PE95273 SPSB1 "Uncharacterized protein 0.875 0.820 0.278 4.1e-17
FB|FBgn0260470 SP555 "SP555" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 125/216 (57%), Positives = 168/216 (77%)

Query:    33 GCDDWWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQR 92
             G +D WTW +  +S +  L G N RTV+FHP WSKG AG++G R LNNGR+YWEL  SQR
Sbjct:    60 GVEDNWTWSKRHRSKEVVLRGPNSRTVHFHPNWSKGTAGVQGKRSLNNGRHYWELHVSQR 119

Query:    93 LFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEAT 152
             +FGTS+MFGIGT+ AR+H NAF N++G++EH WGLSHKG+++H G    YTK F EN+ T
Sbjct:   120 VFGTSIMFGIGTKSARLHANAFRNMLGENEHGWGLSHKGVLWHEGVALLYTKRFRENQPT 179

Query:   153 RIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEVARRDFIN 212
             +IGVLFDGI GTL+FYKDG+ LG+AF+GL  + EPLYP++CSTA KT+++L+  RR+F+N
Sbjct:   180 QIGVLFDGIEGTLTFYKDGKCLGVAFRGLDQIDEPLYPIVCSTAAKTEMTLKCTRREFVN 239

Query:   213 LQDRCRSIIIKTMNQA-DLDLVKLPTPIRTYIEEAM 247
             LQDRCR++I++ +  A  L+ +KLP PI  Y+ E +
Sbjct:   240 LQDRCRAVIMRRVRSAAQLEKLKLPLPIADYLSEVI 275
GO:0005575 "cellular_component" evidence=ND
GO:0003674 "molecular_function" evidence=ND
GO:0035556 "intracellular signal transduction" evidence=IEA
UNIPROTKB|F1P3A6 SPSB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4182 spsb3a "splA/ryanodine receptor domain and SOCS box containing 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHZ2 SPSB3 "SPRY domain-containing SOCS box protein 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6PJ21 SPSB3 "SPRY domain-containing SOCS box protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1891471 Spsb3 "splA/ryanodine receptor domain and SOCS box containing 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYM3 SPSB3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1310936 Spsb3 "splA/ryanodine receptor domain and SOCS box containing 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0036549 CG10516 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1PE95 SPSB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
cd12876187 cd12876, SPRY_SOCS3, SPRY domain in the suppressor 3e-92
cd12875171 cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and 8e-24
cd12906174 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppre 6e-20
cd11709118 cd11709, SPRY, SPRY domain 2e-18
pfam00622125 pfam00622, SPRY, SPRY domain 9e-17
smart00449122 smart00449, SPRY, Domain in SPla and the RYanodine 3e-16
cd12907175 cd12907, SPRY_Fbox, SPRY domain in the F-box famil 3e-16
cd12873155 cd12873, SPRY_DDX1, SPRY domain associated with DE 3e-14
cd12884176 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous 7e-12
cd12891169 cd12891, SPRY_PRY_C-IV_2, PRY/SPRY domain in tripa 5e-10
cd13734169 cd13734, SPRY_PRY_C-I, PRY/SPRY domain in triparti 6e-10
cd12885132 cd12885, SPRY_RanBP_like, SPRY domain in Ran bindi 3e-08
cd12880160 cd12880, SPRYD7, SPRY domain-containing protein 7 1e-07
cd12872149 cd12872, SPRY_Ash2, SPRY domain in Ash2 2e-07
cd13737177 cd13737, SPRY_PRY_TRIM25-like, PRY/SPRY domain in 2e-07
cd12896182 cd12896, SPRY_PRY_TRIM65, PRY/SPRY domain in tripa 1e-06
cd12889172 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tri 4e-06
cd12892177 cd12892, SPRY_PRY_TRIM18, PRY/SPRY domain of TRIM1 4e-05
cd12909153 cd12909, SPRY_RanBP9_10, SPRY domain in Ran bindin 7e-05
cd12886128 cd12886, SPRY_like, SPRY domain-like in bacteria 1e-04
cd13736169 cd13736, SPRY_PRY_TRIM25, PRY/SPRY domain in tripa 6e-04
cd12887161 cd12887, SPRY_NHR_like, SPRY domain in neuralized 8e-04
>gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine signaling 3 (SOCS3) family Back     alignment and domain information 
 Score =  269 bits (690), Expect = 3e-92
 Identities = 87/188 (46%), Positives = 124/188 (65%), Gaps = 5/188 (2%)

Query: 38  WTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQL-NNGRYYWELATSQRLFGT 96
           W WD +DKSP   +  +++R V FHP +S G A +RG++ L   G++YWE+     ++GT
Sbjct: 2   WVWDEDDKSPSV-VLSEDNREVYFHPDYSCGTAAVRGSKPLTEGGQHYWEIKMLSPVYGT 60

Query: 97  SMMFGIGTRKARIHQNA--FINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRI 154
           SMM GIGT  A +H     F +L+G DE SWGLS+KGL++H G+   YT+ F  N+ T I
Sbjct: 61  SMMVGIGTDDADLHAYRYEFCSLLGLDEESWGLSYKGLLWHNGESRPYTEKFG-NQGTII 119

Query: 155 GVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEVARRDFINLQ 214
           GV  D  +GTL+FYK+G+ LG+AF GLQ+  + LYPM+ STA K+++ L  AR   ++LQ
Sbjct: 120 GVHLDMWSGTLTFYKNGKPLGVAFTGLQNDGKKLYPMVSSTAAKSEMKLINARSFPVSLQ 179

Query: 215 DRCRSIII 222
            RC + I 
Sbjct: 180 YRCCAAIR 187

The SPRY domain-containing SOCS box protein family (SPSB1-4, also known as SSB-1 to -4) is composed of a central SPRY protein interaction domain and a C-terminal SOCS box. All four SPSB proteins interact with c-Met, the hepatocyte growth factor receptor, but SOCS3 regulates cellular response to a variety of cytokines such as leukemia inhibitory factor (LIF) and interleukin 6. SOCS3, along with SOCS1, are expressed by immune cells and cells of the central nervous system (CNS) and have the potential to impact immune processes within the CNS. In non-small cell lung cancer (NSCLC), SOCS3 is silenced and proline-rich tyrosine kinase 2 (Pyk2) is over-expressed; it has been suggested that SOCS3 could be an effective way to prevent the progression of NSCLC due to its role in regulating Pyk2 expression. Length = 187
>gnl|CDD|240455 cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and suppressors of cytokine signaling (SOCS) proteins Back     alignment and domain information
>gnl|CDD|240486 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppressor of cytokine signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4) Back     alignment and domain information
>gnl|CDD|240451 cd11709, SPRY, SPRY domain Back     alignment and domain information
>gnl|CDD|216029 pfam00622, SPRY, SPRY domain Back     alignment and domain information
>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor Back     alignment and domain information
>gnl|CDD|240487 cd12907, SPRY_Fbox, SPRY domain in the F-box family Fbxo45 Back     alignment and domain information
>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1 Back     alignment and domain information
>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1 Back     alignment and domain information
>gnl|CDD|240471 cd12891, SPRY_PRY_C-IV_2, PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM14-like, TRIM16-like, TRIM25-like, TRIM47-like and RNF135 and stonustoxin Back     alignment and domain information
>gnl|CDD|240492 cd13734, SPRY_PRY_C-I, PRY/SPRY domain in tripartite motif-containing proteins 1, 9, 18, 36, 46, 67,76 (TRIM1, TRIM9, TRIM18, TRIM36, TRIM46, TRIM67, TRIM76) Back     alignment and domain information
>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins, SSH4, HECT E3 and SPRYD3 Back     alignment and domain information
>gnl|CDD|240460 cd12880, SPRYD7, SPRY domain-containing protein 7 Back     alignment and domain information
>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2 Back     alignment and domain information
>gnl|CDD|240495 cd13737, SPRY_PRY_TRIM25-like, PRY/SPRY domain in tripartite motif-containing domain 25 (TRIM25)-like Back     alignment and domain information
>gnl|CDD|240476 cd12896, SPRY_PRY_TRIM65, PRY/SPRY domain in tripartite motif-containing domain 65 (TRIM65) Back     alignment and domain information
>gnl|CDD|240469 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67 Back     alignment and domain information
>gnl|CDD|240472 cd12892, SPRY_PRY_TRIM18, PRY/SPRY domain of TRIM18/MID1, also known as FXY or RNF59 Back     alignment and domain information
>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and 10 Back     alignment and domain information
>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria Back     alignment and domain information
>gnl|CDD|240494 cd13736, SPRY_PRY_TRIM25, PRY/SPRY domain in tripartite motif-containing domain 25 (TRIM25) Back     alignment and domain information
>gnl|CDD|240467 cd12887, SPRY_NHR_like, SPRY domain in neuralized homology repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 256
KOG3953|consensus242 100.0
smart00449122 SPRY Domain in SPla and the RYanodine Receptor. Do 99.92
PF00622124 SPRY: SPRY domain; InterPro: IPR003877 The SPRY do 99.89
KOG0349|consensus 725 99.85
KOG4367|consensus699 99.76
KOG2626|consensus544 99.7
KOG4030|consensus197 99.69
cd0374342 SOCS_SSB4 SOCS (suppressors of cytokine signaling) 98.99
cd0373339 SOCS_WSB_SWIP SOCS (suppressors of cytokine signal 98.97
cd0374640 SOCS_WSB1_SWIP1 SOCS (suppressors of cytokine sign 98.97
cd0371842 SOCS_SSB1_4 SOCS (suppressors of cytokine signalin 98.97
cd0371739 SOCS_SOCS_like SOCS (suppressors of cytokine signa 98.96
cd0374442 SOCS_SSB1 SOCS (suppressors of cytokine signaling) 98.95
cd0371942 SOCS_SSB2 SOCS (suppressors of cytokine signaling) 98.94
cd0374243 SOCS_Rab40 SOCS (suppressors of cytokine signaling 98.92
cd0374041 SOCS_SOCS6 SOCS (suppressors of cytokine signaling 98.89
PF1376549 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2V 98.87
smart0025343 SOCS suppressors of cytokine signalling. suppresso 98.86
cd0372842 SOCS_ASB_9_11 SOCS (suppressors of cytokine signal 98.86
cd0373856 SOCS_SOCS4 SOCS (suppressors of cytokine signaling 98.85
cd0372942 SOCS_ASB13 SOCS (suppressors of cytokine signaling 98.85
cd0372645 SOCS_ASB7 SOCS (suppressors of cytokine signaling) 98.85
cd0372442 SOCS_ASB5 SOCS (suppressors of cytokine signaling) 98.83
cd0373957 SOCS_SOCS5 SOCS (suppressors of cytokine signaling 98.82
cd0374539 SOCS_WSB2_SWIP2 SOCS (suppressors of cytokine sign 98.82
cd0374149 SOCS_SOCS7 SOCS (suppressors of cytokine signaling 98.82
PF0752540 SOCS_box: SOCS box; InterPro: IPR001496 The SOCS b 98.82
cd0372544 SOCS_ASB6 SOCS (suppressors of cytokine signaling) 98.8
cd0372743 SOCS_ASB8 SOCS (suppressors of cytokine signaling) 98.8
cd0372042 SOCS_ASB1 SOCS (suppressors of cytokine signaling) 98.8
cd0372145 SOCS_ASB2 SOCS (suppressors of cytokine signaling) 98.8
cd0371642 SOCS_ASB_like SOCS (suppressors of cytokine signal 98.79
cd0373543 SOCS_SOCS1 SOCS (suppressors of cytokine signaling 98.79
KOG2243|consensus 5019 98.75
cd0358741 SOCS SOCS (suppressors of cytokine signaling) box. 98.75
cd0372348 SOCS_ASB4_ASB18 SOCS (suppressors of cytokine sign 98.75
cd0373057 SOCS_ASB14 SOCS (suppressors of cytokine signaling 98.72
cd0372251 SOCS_ASB3 SOCS (suppressors of cytokine signaling) 98.71
cd0373156 SOCS_ASB15 SOCS (suppressors of cytokine signaling 98.65
cd0373641 SOCS_SOCS2 SOCS (suppressors of cytokine signaling 98.58
cd0373441 SOCS_CIS1 SOCS (suppressors of cytokine signaling) 98.51
smart0058952 PRY associated with SPRY domains. 98.23
cd0373742 SOCS_SOCS3 SOCS (suppressors of cytokine signaling 98.02
KOG1477|consensus 469 96.47
PF0717769 Neuralized: Neuralized; InterPro: IPR006573 NEUZ i 95.77
KOG2243|consensus 5019 95.52
KOG2177|consensus386 95.09
smart00588123 NEUZ domain in neuralized proteins. 92.81
PF01847156 VHL: von Hippel-Lindau disease tumour suppressor p 88.34
>KOG3953|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.7e-37  Score=253.74  Aligned_cols=207  Identities=29%  Similarity=0.485  Sum_probs=183.5

Q ss_pred             ceeEeCCCCCCCEEEecCCCceEEeCCCCCCCcceEEecccccCceEEEEEEEeccccCceEEEEEEecccccccccccc
Q psy17782         37 WWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFIN  116 (256)
Q Consensus        37 ~~~ld~~~~~~~l~ls~d~~~~v~~~p~r~~~~~~V~g~~~~~sG~hYWEV~v~~~~~~~~~~vGv~~~~~~~~~~~~~~  116 (256)
                      .+.|++++++.++.+..++..++++||.. .++++++|+.+++.|+|+|||.|..++.||+.+|||+++.++++..++..
T Consensus        26 ~~~w~~~drs~nv~vk~~~~~tfhrhpva-qstd~~rGk~g~~~g~h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~a  104 (242)
T KOG3953|consen   26 QHGWSPSDRSLNVFVKLPDGLTFHRHPVA-QSTDGIRGKRGYSRGRHAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTA  104 (242)
T ss_pred             hhccCcccccceeEEecCCcceEEecCCc-cccccccceeeeccCceEEEEEecCCccCCcceEEEEcccCchhhhHHHH
Confidence            48999999999999998867999999986 45899999999999999999999999999999999999999999988889


Q ss_pred             ccCCCCceeEEEeC-cEEEeCCeee-ecCCCCC---CCCCCEEEEEEeCCCCEEEEEEcCeeeeeeeeccccCCCceEEE
Q psy17782        117 LIGKDEHSWGLSHK-GLIFHGGKFY-NYTKPFP---ENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPM  191 (256)
Q Consensus       117 ~lG~~~~sw~~~~~-g~~~h~~~~~-~~~~~~~---~~~~~~IGv~LD~~~G~lsFy~~g~~lg~af~~~~~f~~~lyP~  191 (256)
                      ++|.|++||||... +.+||++... .|+....   ...+++|+|.|||++|+|+|+.+++.||+||++++  ..+|||+
T Consensus       105 LlGs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL~--~~~LYP~  182 (242)
T KOG3953|consen  105 LLGSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIEGTLSFAADGEYLGVAFRGLK--DKKLYPA  182 (242)
T ss_pred             HhCCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeeccceEEEEECCeEEeeeecCCC--CCcceee
Confidence            99999999999975 4899998322 2332111   24789999999999999999999999999999876  5799999


Q ss_pred             EeecCCceeEEEeeec----ccccchhHHHHHHHHhccCc-CCcCcCCCChhHHHHHHHh
Q psy17782        192 ICSTAVKTQISLEVAR----RDFINLQDRCRSIIIKTMNQ-ADLDLVKLPTPIRTYIEEA  246 (256)
Q Consensus       192 ~~~~~~~~~v~l~~~~----~~~~sLq~lcr~~Ir~~~~~-~~i~~l~LP~~l~~~l~~~  246 (256)
                      +|..+++++|++.+..    ..+.++..+||+++|..+++ ..|..+++|+.+|.|++|+
T Consensus       183 Vsav~g~~Evtm~Ylg~~~~~e~~~~~~~~r~~~r~~~~~~~~i~~l~~~~~~k~~~l~~  242 (242)
T KOG3953|consen  183 VSAVWGHCEVTMKYLGTLDVDEPDPLANLCRRRLRSSLGGDELITALVHEPCDKYYLLYQ  242 (242)
T ss_pred             eeehhcceeEEEEEeCCcCcCCccccchhhhhhhhhccCCcccccccccchhhcchhccC
Confidence            9999999999999743    45789999999999999998 7799999999999999874

>smart00449 SPRY Domain in SPla and the RYanodine Receptor Back     alignment and domain information
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function Back     alignment and domain information
>KOG0349|consensus Back     alignment and domain information
>KOG4367|consensus Back     alignment and domain information
>KOG2626|consensus Back     alignment and domain information
>KOG4030|consensus Back     alignment and domain information
>cd03743 SOCS_SSB4 SOCS (suppressors of cytokine signaling) box of SSB4 (SPRY domain-containing SOCS box proteins)-like proteins Back     alignment and domain information
>cd03733 SOCS_WSB_SWIP SOCS (suppressors of cytokine signaling) box of WSB/SWiP-like proteins Back     alignment and domain information
>cd03746 SOCS_WSB1_SWIP1 SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins Back     alignment and domain information
>cd03718 SOCS_SSB1_4 SOCS (suppressors of cytokine signaling) box of SSB1 and SSB4 (SPRY domain-containing SOCS box proteins)-like proteins Back     alignment and domain information
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins Back     alignment and domain information
>cd03744 SOCS_SSB1 SOCS (suppressors of cytokine signaling) box of SSB1 (SPRY domain-containing SOCS box proteins)-like proteins Back     alignment and domain information
>cd03719 SOCS_SSB2 SOCS (suppressors of cytokine signaling) box of SSB2 (SPRY domain-containing SOCS box proteins)-like proteins Back     alignment and domain information
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins Back     alignment and domain information
>cd03740 SOCS_SOCS6 SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins Back     alignment and domain information
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E Back     alignment and domain information
>smart00253 SOCS suppressors of cytokine signalling Back     alignment and domain information
>cd03728 SOCS_ASB_9_11 SOCS (suppressors of cytokine signaling) box of ASB9 and 11 proteins Back     alignment and domain information
>cd03738 SOCS_SOCS4 SOCS (suppressors of cytokine signaling) box of SOCS4-like proteins Back     alignment and domain information
>cd03729 SOCS_ASB13 SOCS (suppressors of cytokine signaling) box of ASB13-like proteins Back     alignment and domain information
>cd03726 SOCS_ASB7 SOCS (suppressors of cytokine signaling) box of ASB7-like proteins Back     alignment and domain information
>cd03724 SOCS_ASB5 SOCS (suppressors of cytokine signaling) box of ASB5-like proteins Back     alignment and domain information
>cd03739 SOCS_SOCS5 SOCS (suppressors of cytokine signaling) box of SOCS5-like proteins Back     alignment and domain information
>cd03745 SOCS_WSB2_SWIP2 SOCS (suppressors of cytokine signaling) box of WSB2/SWiP2-like proteins Back     alignment and domain information
>cd03741 SOCS_SOCS7 SOCS (suppressors of cytokine signaling) box of SOCS7-like proteins Back     alignment and domain information
>PF07525 SOCS_box: SOCS box; InterPro: IPR001496 The SOCS box was first identified in SH2-domain-containing proteins of the suppressor of cytokines signalling (SOCS) family [] but was later also found in: the WSB (WD-40-repeat-containing proteins with a SOCS box) family, the SSB (SPRY domain-containing proteins with a SOCS box) family, the ASB (ankyrin-repeat-containing proteins with a SOCS box) family, and ras and ras-like GTPases [] Back     alignment and domain information
>cd03725 SOCS_ASB6 SOCS (suppressors of cytokine signaling) box of ASB6-like proteins Back     alignment and domain information
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins Back     alignment and domain information
>cd03720 SOCS_ASB1 SOCS (suppressors of cytokine signaling) box of ASB1-like proteins Back     alignment and domain information
>cd03721 SOCS_ASB2 SOCS (suppressors of cytokine signaling) box of ASB2-like proteins Back     alignment and domain information
>cd03716 SOCS_ASB_like SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families Back     alignment and domain information
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins Back     alignment and domain information
>KOG2243|consensus Back     alignment and domain information
>cd03587 SOCS SOCS (suppressors of cytokine signaling) box Back     alignment and domain information
>cd03723 SOCS_ASB4_ASB18 SOCS (suppressors of cytokine signaling) box of ASB4 and ASB18 proteins Back     alignment and domain information
>cd03730 SOCS_ASB14 SOCS (suppressors of cytokine signaling) box of ASB14-like proteins Back     alignment and domain information
>cd03722 SOCS_ASB3 SOCS (suppressors of cytokine signaling) box of ASB3-like proteins Back     alignment and domain information
>cd03731 SOCS_ASB15 SOCS (suppressors of cytokine signaling) box of ASB15-like proteins Back     alignment and domain information
>cd03736 SOCS_SOCS2 SOCS (suppressors of cytokine signaling) box of SOCS2-like proteins Back     alignment and domain information
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins Back     alignment and domain information
>smart00589 PRY associated with SPRY domains Back     alignment and domain information
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins Back     alignment and domain information
>KOG1477|consensus Back     alignment and domain information
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i Back     alignment and domain information
>KOG2243|consensus Back     alignment and domain information
>KOG2177|consensus Back     alignment and domain information
>smart00588 NEUZ domain in neuralized proteins Back     alignment and domain information
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
2v24_A208 Structure Of The Human Spry Domain-Containing Socs 3e-14
2fnj_A226 Crystal Structure Of A B30.2SPRY DOMAIN-Containing 8e-14
2jk9_A212 The Structure Of Spla-Ryanodine Receptor Domain And 1e-13
3f2o_A233 Crystal Structure Of Human SplaRYANODINE RECEPTOR D 1e-13
2ihs_A214 Crystal Structure Of The B30.2SPRY DOMAIN OF GUSTAV 3e-13
3ek9_A213 Spry Domain-Containing Socs Box Protein 2: Crystal 2e-09
2afj_A226 Spry Domain-Containing Socs Box Protein 2 (Ssb-2) L 2e-09
3emw_A217 Crystal Structure Of Human SplaRYANODINE RECEPTOR D 4e-08
>pdb|2V24|A Chain A, Structure Of The Human Spry Domain-Containing Socs Box Protein Ssb-4 Length = 208 Back     alignment and structure 
Iteration: 1

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 11/174 (6%)
Query: 39  TWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSM 98
            W+  D+S +  +   +  T + HP  ++   GIRG      G + W++    R  GT  
Sbjct: 30  AWNPEDRSLNVFVKDDDRLTFHRHPV-AQSTDGIRGKVGHARGLHAWQINWPARQRGTHA 88
Query: 99  MFGIGTRKARIHQNAFINLIGKDEHSWGLS-HKGLIFHGGK---FYNYTKPFPENEA--- 151
           + G+ T +A +H   +  L+G D  SWG    +  ++H GK      Y      +EA   
Sbjct: 89  VVGVATARAPLHSVGYTALVGSDAESWGWDLGRSRLYHDGKNQPGVAYPAFLGPDEAFAL 148
Query: 152 -TRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLE 204
              + V+ D   GTLSF  DG+YLG+AF+GL+   + LYP++ +     ++++ 
Sbjct: 149 PDSLLVVLDMDEGTLSFIVDGQYLGVAFRGLK--GKKLYPVVSAVWGHCEVTMR 200
>pdb|2FNJ|A Chain A, Crystal Structure Of A B30.2SPRY DOMAIN-Containing Protein Gustavus In Complex With Elongin B And Elongin C Length = 226 Back     alignment and structure
>pdb|2JK9|A Chain A, The Structure Of Spla-Ryanodine Receptor Domain And Socs Box Containing 1 In Complex With A Par-4 Peptide Length = 212 Back     alignment and structure
>pdb|3F2O|A Chain A, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN AND SOCS BOX Containing 1 (Spsb1) In Complex With A 20-Residue Vasa Peptide Length = 233 Back     alignment and structure
>pdb|2IHS|A Chain A, Crystal Structure Of The B30.2SPRY DOMAIN OF GUSTAVUS IN Complex With A 20-Residue Vasa Peptide Length = 214 Back     alignment and structure
>pdb|3EK9|A Chain A, Spry Domain-Containing Socs Box Protein 2: Crystal Structure And Residues Critical For Protein Binding Length = 213 Back     alignment and structure
>pdb|2AFJ|A Chain A, Spry Domain-Containing Socs Box Protein 2 (Ssb-2) Length = 226 Back     alignment and structure
>pdb|3EMW|A Chain A, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN AND SOCS BOX Containing 2 (Spsb2) In Complex With A 20-Residue Vasa Peptide Length = 217 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
2jk9_A212 SPRY domain-containing SOCS box protein 1; transcr 3e-43
3emw_A217 SPRY domain-containing SOCS box protein 2; apoptos 3e-43
2afj_A226 Gene rich cluster, C9 gene; beta sandwich, gene re 2e-42
3toj_A213 SET1/ASH2 histone methyltransferase complex subun; 4e-23
2yyo_A171 SPRY domain-containing protein 3; NPPSFA, national 2e-20
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Length = 212 Back     alignment and structure
 Score =  145 bits (366), Expect = 3e-43
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 15/184 (8%)

Query: 30  FKYGCDDWWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELAT 89
             Y      +W+ ND+S +  +  ++ + +      ++    IRG      G + W++  
Sbjct: 25  VSYDVQLLHSWNNNDRSLNVFV-KEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITW 83

Query: 90  SQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLS-HKGLIFHGGK---------F 139
           + R  GT  + G+ T  A +H   +  L+G +  SWG    +  ++H GK         F
Sbjct: 84  AMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAF 143

Query: 140 YNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKT 199
               + F   +     V  D   GTLSF  DG+Y+G+AF+GL+   + LYP++ +     
Sbjct: 144 LEPDETFIVPD--SFLVALDMDDGTLSFIVDGQYMGVAFRGLK--GKKLYPVVSAVWGHC 199

Query: 200 QISL 203
           +I +
Sbjct: 200 EIRM 203
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Length = 217 Back     alignment and structure
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Length = 226 Back     alignment and structure
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Length = 213 Back     alignment and structure
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Length = 171 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
2fbe_A201 Predicted: similar to RET finger protein-like 1; d 100.0
2wl1_A191 Pyrin, marenostrin; amyloidosis, polymorphism, cyt 100.0
2vok_A188 52 kDa RO protein; polymorphism, immune system, me 100.0
3emw_A217 SPRY domain-containing SOCS box protein 2; apoptos 100.0
3uv9_A186 TRIM5alpha, tripartite motif-containing protein 5; 100.0
3kb5_A193 Tripartite motif-containing protein 72; B30.2, gus 100.0
2jk9_A212 SPRY domain-containing SOCS box protein 1; transcr 100.0
2afj_A226 Gene rich cluster, C9 gene; beta sandwich, gene re 100.0
4b3n_A602 Maltose-binding periplasmic protein, tripartite mo 100.0
3toj_A213 SET1/ASH2 histone methyltransferase complex subun; 99.98
2yyo_A171 SPRY domain-containing protein 3; NPPSFA, national 99.94
2e63_A170 KIAA1787 protein; structure genomics, neuralized d 98.92
2jz3_A40 Suppressor of cytokine signaling 3; SOCS proteins, 98.54
2yue_A168 Protein neuralized; structure genomics, NEUZ(NHR) 98.5
2izv_A187 Suppressor of cytokine signaling 4; signal transdu 97.73
2c9w_A169 Suppressor of cytokine signaling 2; growth regulat 97.29
2xai_A261 ASB-9, ankyrin repeat and SOCS box protein 9; tran 88.34
4ajy_V163 VON hippel-lindau disease tumor suppressor; E3 ubi 86.96
1lm8_V160 VHL, VON hippel-lindau disease tumor suppressor; r 82.63
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22 Back     alignment and structure
Probab=100.00  E-value=4.2e-37  Score=254.37  Aligned_cols=163  Identities=15%  Similarity=0.209  Sum_probs=133.5

Q ss_pred             ccccCCCCceeEeCCCCCCCEEEecCCCceEEe---------CCCCCCCcceEEecccccCceEEEEEEEeccccCceEE
Q psy17782         29 MFKYGCDDWWTWDRNDKSPDTKLFGKNHRTVNF---------HPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMM   99 (256)
Q Consensus        29 ~~~~~~~~~~~ld~~~~~~~l~ls~d~~~~v~~---------~p~r~~~~~~V~g~~~~~sG~hYWEV~v~~~~~~~~~~   99 (256)
                      +++|.++  ++|||+||+++|.||+| +++|++         +|+||+.+.+|||+++|++|||||||+|+++   +.|.
T Consensus         5 ~~~~~~~--~tLDp~TA~~~L~lSed-~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~~---~~w~   78 (201)
T 2fbe_A            5 SPEFQVD--MTFDVDTANNYLIISED-LRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTS---QVWD   78 (201)
T ss_dssp             CGGGBCC--CCEETTTCCTTEEECTT-SSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTTC---SEEE
T ss_pred             ceeEEEe--EEECcccCCCceEECCC-CcEEEECCccCCCCCCccceeeccceecCccccCCceEEEEEeCCC---CEEE
Confidence            4567776  99999999999999999 999987         5789998999999999999999999999875   4799


Q ss_pred             EEEEeccccccccccccccCCCCceeEEEeC-c---EEEeCCeeeecCCCCCCCCCCEEEEEEeCCCCEEEEEEcCe-ee
Q psy17782        100 FGIGTRKARIHQNAFINLIGKDEHSWGLSHK-G---LIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGE-YL  174 (256)
Q Consensus       100 vGv~~~~~~~~~~~~~~~lG~~~~sw~~~~~-g---~~~h~~~~~~~~~~~~~~~~~~IGv~LD~~~G~lsFy~~g~-~l  174 (256)
                      ||||+++++|++.   ..++.+.++|++.+. +   .++| +..+.+..   ...+.||||+|||++|+||||++.+ .+
T Consensus        79 vGV~~~si~Rkg~---~~~~~~~g~W~l~~~~~~~y~~~~-~~~~~l~~---~~~~~rVGVfLDye~G~lSFY~v~~~~~  151 (201)
T 2fbe_A           79 VGVCKESVNRQGK---IELSSEHGFLTVGCREGKVFAAST-VPMTPLWV---SPQLHRVGIFLDVGMRSIAFYNVSDGCH  151 (201)
T ss_dssp             EEEEETTSCCSSC---CCCCTTTTEEEEEEETTTEEEECS-SSCEEECC---CTTCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEeeCccCCCCc---ccccCCCCEEEEEEeCCCEEEEEc-CCcccCcc---CCCCCEEEEEEEcCCCEEEEEeCCCCce
Confidence            9999999999864   357899999999974 3   2444 33334432   3367999999999999999999875 67


Q ss_pred             eeeeeccccCCCceEEEEeecC----CceeEEEee
Q psy17782        175 GIAFQGLQHVQEPLYPMICSTA----VKTQISLEV  205 (256)
Q Consensus       175 g~af~~~~~f~~~lyP~~~~~~----~~~~v~l~~  205 (256)
                      +++|+. ..|++||||+|++..    ....++|+.
T Consensus       152 i~tF~~-~~Fs~pL~P~F~~~~~~~~~~~~l~ic~  185 (201)
T 2fbe_A          152 IYTFIE-IPVCEPWRPFFAHKRGSQDDQSILSICS  185 (201)
T ss_dssp             EEEECS-CCCSSCEEEEEEEECSSSSCCCCEEECC
T ss_pred             eEEEcC-CCCCCCEEeEEEecccCCCCCCCEEEeC
Confidence            777763 369999999999862    234688885
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens} Back     alignment and structure
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B* Back     alignment and structure
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Back     alignment and structure
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta} Back     alignment and structure
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens} Back     alignment and structure
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Back     alignment and structure
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Back     alignment and structure
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A Back     alignment and structure
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Back     alignment and structure
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Back     alignment and structure
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus} Back     alignment and structure
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster} Back     alignment and structure
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Back     alignment and structure
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Back     alignment and structure
>4ajy_V VON hippel-lindau disease tumor suppressor; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 3zrc_C 3zrf_C* 3ztc_C* 3zun_C 4awj_C* 1lqb_C 3ztd_C* 4b95_C* 1lm8_V 1vcb_C 4b9k_C* Back     alignment and structure
>1lm8_V VHL, VON hippel-lindau disease tumor suppressor; regulation, tumor suppressor, oxygen sensing, transcription; 1.85A {Homo sapiens} SCOP: b.3.3.1 PDB: 1vcb_C 1lqb_C 3zrf_C 3zrc_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 256
d2fnja1217 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophi 5e-41
d2afja1213 b.29.1.22 (A:12-224) SPRY domain-containing SOCS b 1e-29
d2iwgb1179 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo 2e-08
d2fbea1188 b.29.1.22 (A:1-188) Similar to Ret finger protein- 6e-08
d2izva144 a.271.1.1 (A:386-429) Suppressor of cytokine signa 0.002
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  138 bits (348), Expect = 5e-41
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 18/197 (9%)

Query: 38  WTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTS 97
            +W+  D+S +  +   +  T + HP  ++    IRG   L  G + WE+    R  GT 
Sbjct: 24  HSWNSEDRSLNIFVKEDDKLTFHRHP-VAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTH 82

Query: 98  MMFGIGTRKARIHQNAFINLIGKDEHSWGLS-HKGLIFHGGK---------FYNYTKPFP 147
            + G+ T  A +H   + +L+G  E SWG    +  ++H  K              + F 
Sbjct: 83  AVVGVCTADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFL 142

Query: 148 ENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEV-- 205
             +  +  V  D   GTLSF  D +YLGIAF+GL+   + LYP++ +     +I++    
Sbjct: 143 VPD--KFLVALDMDEGTLSFIVDQQYLGIAFRGLRG--KKLYPIVSAVWGHCEITMRYIG 198

Query: 206 -ARRDFINLQDRCRSII 221
               + + L D CR  I
Sbjct: 199 GLDPEPLPLMDLCRRTI 215
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 213 Back     information, alignment and structure
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]} Length = 179 Back     information, alignment and structure
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 188 Back     information, alignment and structure
>d2izva1 a.271.1.1 (A:386-429) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 44 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
d2fbea1188 Similar to Ret finger protein-like 1 {Human (Homo 100.0
d2fnja1217 LD34464p {Fruit fly (Drosophila melanogaster) [Tax 100.0
d2iwgb1179 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 96 100.0
d2afja1213 SPRY domain-containing SOCS box protein 2 {Mouse ( 99.96
d2izva144 Suppressor of cytokine signaling 4, SOCS-4 {Human 98.92
d2c9wa150 Suppressor of cytokine signaling 2, SOCS-2 {Human 98.52
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: Similar to Ret finger protein-like 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-37  Score=254.02  Aligned_cols=165  Identities=15%  Similarity=0.211  Sum_probs=137.0

Q ss_pred             cccccCCCCceeEeCCCCCCCEEEecCCCceEEe---------CCCCCCCcceEEecccccCceEEEEEEEeccccCceE
Q psy17782         28 DMFKYGCDDWWTWDRNDKSPDTKLFGKNHRTVNF---------HPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSM   98 (256)
Q Consensus        28 ~~~~~~~~~~~~ld~~~~~~~l~ls~d~~~~v~~---------~p~r~~~~~~V~g~~~~~sG~hYWEV~v~~~~~~~~~   98 (256)
                      ...+|.++  ++|||+|||++|.||+| +++|++         +|+||+.+.+|||+++|++|||||||+|.+.   ..|
T Consensus         4 ~~~ky~vd--vtLDp~TAh~~L~lS~d-~~~V~~~~~~~~~p~~p~rF~~~~~VLg~~~fssGrHYWEV~V~~~---~~w   77 (188)
T d2fbea1           4 GSPEFQVD--MTFDVDTANNYLIISED-LRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTS---QVW   77 (188)
T ss_dssp             SCGGGBCC--CCEETTTCCTTEEECTT-SSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTTC---SEE
T ss_pred             CCcceeEe--eEcCCCCCCCCEEEccC-CcEEEECCcCCCCCCCcccccceeeccccccccCCCEEEEEEeeeC---CeE
Confidence            34678887  99999999999999999 999986         5789999999999999999999999999875   479


Q ss_pred             EEEEEeccccccccccccccCCCCceeEEEeC-c--EEEeCCeeeecCCCCCCCCCCEEEEEEeCCCCEEEEEEcCe-ee
Q psy17782         99 MFGIGTRKARIHQNAFINLIGKDEHSWGLSHK-G--LIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGE-YL  174 (256)
Q Consensus        99 ~vGv~~~~~~~~~~~~~~~lG~~~~sw~~~~~-g--~~~h~~~~~~~~~~~~~~~~~~IGv~LD~~~G~lsFy~~g~-~l  174 (256)
                      .||||+++++|++.   ..++.+..+|++.+. +  ..+|++....+..   ...+.||||+|||++|+|+||++.+ .+
T Consensus        78 ~vGV~~~sv~Rk~~---~~~~~~~~~w~l~~~~~~~~~~~~~~~~~l~~---~~~~~rVGV~LDye~G~lSFyn~~~~~~  151 (188)
T d2fbea1          78 DVGVCKESVNRQGK---IELSSEHGFLTVGCREGKVFAASTVPMTPLWV---SPQLHRVGIFLDVGMRSIAFYNVSDGCH  151 (188)
T ss_dssp             EEEEEETTSCCSSC---CCCCTTTTEEEEEEETTTEEEECSSSCEEECC---CTTCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEEeCCcCcCcc---cccCCCCCCEEEEecCCcEEEecCCCceeecc---CCCCCEEEEEEEcCCCEEEEEeCCCCcE
Confidence            99999999998764   357788899999863 3  5678877655543   2367999999999999999999875 67


Q ss_pred             eeeeeccccCCCceEEEEeecCC----ceeEEEee
Q psy17782        175 GIAFQGLQHVQEPLYPMICSTAV----KTQISLEV  205 (256)
Q Consensus       175 g~af~~~~~f~~~lyP~~~~~~~----~~~v~l~~  205 (256)
                      +++|.. ..|++||||+|++..+    ...++||.
T Consensus       152 L~tF~~-~~F~~pl~P~F~~~~~~~~~~~~L~IC~  185 (188)
T d2fbea1         152 IYTFIE-IPVCEPWRPFFAHKRGSQDDQSILSICS  185 (188)
T ss_dssp             EEEECS-CCCSSCEEEEEEEECSSSSCCCCEEECC
T ss_pred             EEEECC-CCCCCCEeCeEECcCCCCCCCCceEEcC
Confidence            777753 5699999999998654    34577764
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2izva1 a.271.1.1 (A:386-429) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure