Psyllid ID: psy17792

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI
Secondary Structure (PSIPRED)
ccHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccHHHHHccccccHHHHHHHHHHHHHHHccccEEEEEcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHEcEcccccEcHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTalfessglsektakfttIGIGAVMVTMTIISIplmdrmgrrtlhlyglggMFIFSIFITISLLI
Flexible Loop (DISEMBL)
mrveqiaqqseskismSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI
Low Complexity Region (SEG)
MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMfifsifitislli
Disordered region (IsUnstruct)
******************LLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLL*
Disordered Region (DISOPRED)
*******************LCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI
Disordered Region (DISEMBL)
**************SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI
Disordered Region (DISPRO)
************KISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q8IRI6	600	Glucose transporter type	yes	N/A	1.0	0.193	0.818	2e-49
Q07647	493	Solute carrier family 2,	yes	N/A	0.982	0.231	0.5	5e-26
P32037	493	Solute carrier family 2,	yes	N/A	0.982	0.231	0.491	3e-25
Q9XSC2	400	Solute carrier family 2,	yes	N/A	0.982	0.285	0.491	3e-25
Q27994	509	Solute carrier family 2,	yes	N/A	0.982	0.223	0.517	4e-25
P14142	509	Solute carrier family 2,	no	N/A	0.982	0.223	0.491	6e-25
P58352	494	Solute carrier family 2,	yes	N/A	0.982	0.230	0.491	1e-24
P47843	494	Solute carrier family 2,	N/A	N/A	0.982	0.230	0.491	1e-24
P14672	509	Solute carrier family 2,	yes	N/A	0.982	0.223	0.482	1e-24
P47842	495	Solute carrier family 2,	yes	N/A	0.982	0.230	0.491	2e-24

>sp|Q8IRI6|GTR1_DROME Glucose transporter type 1 OS=Drosophila melanogaster GN=Glut1 PE=2 SV=3

 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 104/116 (89%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           MR E+ AQQSES IS  EL+CS TLR PLIIGIVMQLSQQFSGINAVFYYST+LF SSGL
Sbjct: 434 MRAEERAQQSESHISTMELICSPTLRPPLIIGIVMQLSQQFSGINAVFYYSTSLFMSSGL 493

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
           +E++AKF TIGIGA+MV MT++SIPLMDR GRRTLHLYGLGGMFIFSIFITIS LI
Sbjct: 494 TEESAKFATIGIGAIMVVMTLVSIPLMDRTGRRTLHLYGLGGMFIFSIFITISFLI 549

Facilitative glucose transporter.
Drosophila melanogaster (taxid: 7227)

>sp|Q07647|GTR3_RAT Solute carrier family 2, facilitated glucose transporter member 3 OS=Rattus norvegicus GN=Slc2a3 PE=1 SV=1

 Score =  115 bits (289), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 83/116 (71%), Gaps = 2/116 (1%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           M+ E I    E ++++ EL  S +  +PL+I +V+QLSQQFSGINAVFYYST +F+ +G+
Sbjct: 242 MKDESIRMSQEKQVTVLELFKSPSYFQPLLISVVLQLSQQFSGINAVFYYSTGIFQDAGV 301

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
            E    + TIG G V    T++S+ L++R GRRTLH+ GLGGM + S+F+TISLL+
Sbjct: 302 QEPI--YATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSVFMTISLLL 355

Facilitative glucose transporter. Probably a neuronal glucose transporter.

Rattus norvegicus (taxid: 10116)

>sp|P32037|GTR3_MOUSE Solute carrier family 2, facilitated glucose transporter member 3 OS=Mus musculus GN=Slc2a3 PE=1 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 81/116 (69%), Gaps = 2/116 (1%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           M+ E +    E ++++ EL  S    +PL+I IV+QLSQQ SGINAVFYYST +F+ +G+
Sbjct: 242 MKDESVRMSQEKQVTVLELFRSPNYVQPLLISIVLQLSQQLSGINAVFYYSTGIFKDAGV 301

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
            E    + TIG G V    T++S+ L++R GRRTLH+ GLGGM + S+F+TISLL+
Sbjct: 302 QEPI--YATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSVFMTISLLL 355

Facilitative glucose transporter. Probably a neuronal glucose transporter.

Mus musculus (taxid: 10090)

>sp|Q9XSC2|GTR3_RABIT Solute carrier family 2, facilitated glucose transporter member 3 (Fragment) OS=Oryctolagus cuniculus GN=SLC2A3 PE=2 SV=1

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 82/116 (70%), Gaps = 2/116 (1%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           M+ E    + E ++++ EL  + + R+P+II IV+QLSQQ SGINAVFYYST +F+ +G+
Sbjct: 147 MKEESARMRQEKQVTVLELFRAPSYRQPIIISIVLQLSQQLSGINAVFYYSTGIFKDAGV 206

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
            E    + TIG G V    TI+S+ L++R GRRTLHL GLGGM + S+ +T+SLL+
Sbjct: 207 REPI--YATIGAGVVNTIFTIVSVFLVERAGRRTLHLIGLGGMALCSVLMTVSLLL 260

Facilitative glucose transporter. Probably a neuronal glucose transporter.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q27994|GTR4_BOVIN Solute carrier family 2, facilitated glucose transporter member 4 OS=Bos taurus GN=SLC2A4 PE=2 SV=2

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 85/116 (73%), Gaps = 2/116 (1%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           ++ E+   + E  +S+ +LL S T R+PL+I IV+QLSQQ SGINAVFYYST++FES+G+
Sbjct: 260 LKEEKRKLERERPLSLLQLLGSHTHRQPLVIAIVLQLSQQLSGINAVFYYSTSIFESAGV 319

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
            EK A + TIG G V    T++S+ L++R GRRTLHL GL GM   +I +T++LL+
Sbjct: 320 -EKPA-YATIGAGVVNTVFTLVSVFLVERAGRRTLHLLGLAGMCGCAILMTVALLL 373

Insulin-regulated facilitative glucose transporter.

Bos taurus (taxid: 9913)

>sp|P14142|GTR4_MOUSE Solute carrier family 2, facilitated glucose transporter member 4 OS=Mus musculus GN=Slc2a4 PE=1 SV=3

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 83/116 (71%), Gaps = 2/116 (1%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           ++ E+   + E  +S+ +LL S T R+PLII +V+QLSQQ SGINAVFYYST++FES+G+
Sbjct: 260 LKDEKRKLERERPMSLLQLLGSRTHRQPLIIAVVLQLSQQLSGINAVFYYSTSIFESAGV 319

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
            +    + TIG G V    T++S+ L++R GRRTLHL GL GM   +I +T++LL+
Sbjct: 320 GQPA--YATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALLL 373

Insulin-regulated facilitative glucose transporter.

Mus musculus (taxid: 10090)

>sp|P58352|GTR3_BOVIN Solute carrier family 2, facilitated glucose transporter member 3 OS=Bos taurus GN=SLC2A3 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 2/116 (1%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           M+ E +    E ++++ EL  +   R+P+II I++QLSQQ SGINAVFYYST +F+ +G+
Sbjct: 242 MKDESMRMSQEKQVTVLELFRAPNYRQPIIISIMLQLSQQLSGINAVFYYSTGIFKDAGV 301

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
            E    + TIG G V    T++S+ L++R GRRTLHL GLGGM   SI +TISLL+
Sbjct: 302 QEPV--YATIGAGVVNTIFTVVSVFLVERAGRRTLHLIGLGGMAFCSILMTISLLL 355

Facilitative glucose transporter. Probably a neuronal glucose transporter.

Bos taurus (taxid: 9913)

>sp|P47843|GTR3_SHEEP Solute carrier family 2, facilitated glucose transporter member 3 OS=Ovis aries GN=SLC2A3 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 2/116 (1%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           M+ E +    E ++++ EL  +   R+P+II I++QLSQQ SGINAVFYYST +F+ +G+
Sbjct: 242 MKDESMRMSQEKQVTVLELFRAPNYRQPIIISIMLQLSQQLSGINAVFYYSTGIFKDAGV 301

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
            E    + TIG G V    T++S+ L++R GRRTLHL GLGGM   SI +TISLL+
Sbjct: 302 QEPV--YATIGAGVVNTIFTVVSVFLVERAGRRTLHLIGLGGMAFCSILMTISLLL 355

Facilitative glucose transporter. Probably a neuronal glucose transporter.

Ovis aries (taxid: 9940)

>sp|P14672|GTR4_HUMAN Solute carrier family 2, facilitated glucose transporter member 4 OS=Homo sapiens GN=SLC2A4 PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/116 (48%), Positives = 83/116 (71%), Gaps = 2/116 (1%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           ++ E+   + E  +S+ +LL S T R+PLII +V+QLSQQ SGINAVFYYST++FE++G+
Sbjct: 260 LKDEKRKLERERPLSLLQLLGSRTHRQPLIIAVVLQLSQQLSGINAVFYYSTSIFETAGV 319

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
            +    + TIG G V    T++S+ L++R GRRTLHL GL GM   +I +T++LL+
Sbjct: 320 GQPA--YATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALLL 373

Insulin-regulated facilitative glucose transporter.

Homo sapiens (taxid: 9606)

>sp|P47842|GTR3_CANFA Solute carrier family 2, facilitated glucose transporter member 3 OS=Canis familiaris GN=SLC2A3 PE=2 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 81/116 (69%), Gaps = 2/116 (1%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           M+ E      E ++++ EL  S + R+P+II I++QLSQQ SGINAVFYYST +F+ +G+
Sbjct: 242 MKDESARMAQEKQVTVLELFRSRSYRQPIIISIMLQLSQQLSGINAVFYYSTGIFKDAGV 301

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
            E    + TIG G V    T++S+ L++R GRRTLH+ GLGGM + SI +TISLL+
Sbjct: 302 EEPI--YATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSILMTISLLL 355

Facilitative glucose transporter. Probably a neuronal glucose transporter.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
442629305	1326	glucose transporter 1, isoform Q [Drosop	1.0	0.087	0.818	2e-48
383858297	863	PREDICTED: LOW QUALITY PROTEIN: glucose	1.0	0.134	0.793	3e-48
442629303	1440	glucose transporter 1, isoform P [Drosop	1.0	0.080	0.818	3e-48
307186386	883	Glucose transporter type 1 [Camponotus f	1.0	0.131	0.793	4e-48
195336445	805	GM14369 [Drosophila sechellia] gi|194127	1.0	0.144	0.818	5e-48
194864719	801	GG14750 [Drosophila erecta] gi|190652856	1.0	0.144	0.818	5e-48
442629307	802	glucose transporter 1, isoform R [Drosop	1.0	0.144	0.818	6e-48
195490254	781	GE21113 [Drosophila yakuba] gi|194179162	1.0	0.148	0.818	6e-48
442629316	744	glucose transporter 1, isoform W [Drosop	1.0	0.155	0.818	7e-48
195586811	751	GD13586 [Drosophila simulans] gi|1941951	1.0	0.154	0.818	7e-48

>gi|442629305|ref|NP_001097470.2| glucose transporter 1, isoform Q [Drosophila melanogaster] gi|440215098|gb|ABW08435.2| glucose transporter 1, isoform Q [Drosophila melanogaster]

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 104/116 (89%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           MR E+ AQQSES IS  EL+CS TLR PLIIGIVMQLSQQFSGINAVFYYST+LF SSGL
Sbjct: 245 MRAEERAQQSESHISTMELICSPTLRPPLIIGIVMQLSQQFSGINAVFYYSTSLFMSSGL 304

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
           +E++AKF TIGIGA+MV MT++SIPLMDR GRRTLHLYGLGGMFIFSIFITIS LI
Sbjct: 305 TEESAKFATIGIGAIMVVMTLVSIPLMDRTGRRTLHLYGLGGMFIFSIFITISFLI 360

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858297|ref|XP_003704638.1| PREDICTED: LOW QUALITY PROTEIN: glucose transporter type 1-like [Megachile rotundata]

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/116 (79%), Positives = 105/116 (90%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           MR E+ AQQ+ES+ISM+EL+CS TLR PL+IG+VMQLSQQ SGINAVFYYST LF SSGL
Sbjct: 603 MRAEERAQQAESRISMTELICSPTLRAPLVIGVVMQLSQQLSGINAVFYYSTNLFTSSGL 662

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
           +E++AKF TIGIGA+MV MT++SIPLMDR GRRTLHLYGLGGMFIFSIFITIS LI
Sbjct: 663 TEESAKFATIGIGAIMVCMTLVSIPLMDRTGRRTLHLYGLGGMFIFSIFITISFLI 718

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442629303|ref|NP_612073.2| glucose transporter 1, isoform P [Drosophila melanogaster] gi|440215097|gb|AAF47434.2| glucose transporter 1, isoform P [Drosophila melanogaster]

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 104/116 (89%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           MR E+ AQQSES IS  EL+CS TLR PLIIGIVMQLSQQFSGINAVFYYST+LF SSGL
Sbjct: 245 MRAEERAQQSESHISTMELICSPTLRPPLIIGIVMQLSQQFSGINAVFYYSTSLFMSSGL 304

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
           +E++AKF TIGIGA+MV MT++SIPLMDR GRRTLHLYGLGGMFIFSIFITIS LI
Sbjct: 305 TEESAKFATIGIGAIMVVMTLVSIPLMDRTGRRTLHLYGLGGMFIFSIFITISFLI 360

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186386|gb|EFN72020.1| Glucose transporter type 1 [Camponotus floridanus]

 Score =  194 bits (494), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/116 (79%), Positives = 105/116 (90%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           MR E+ AQQ+ES ISM+EL+CS TLRKPL+IG+VMQLSQQ SGINAVFYYST LF SSGL
Sbjct: 619 MRAEERAQQAESTISMTELICSPTLRKPLVIGVVMQLSQQLSGINAVFYYSTNLFTSSGL 678

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
           ++++AKF TIGIGA+MV MT++SIPLMDR GRRTLHLYGLGGMFIFSIFITIS LI
Sbjct: 679 TDESAKFATIGIGAIMVAMTLVSIPLMDRAGRRTLHLYGLGGMFIFSIFITISFLI 734

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195336445|ref|XP_002034846.1| GM14369 [Drosophila sechellia] gi|194127939|gb|EDW49982.1| GM14369 [Drosophila sechellia]

 Score =  194 bits (493), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 104/116 (89%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           MR E+ AQQSES IS  EL+CS TLR PLIIGIVMQLSQQFSGINAVFYYST+LF SSGL
Sbjct: 535 MRAEERAQQSESHISTMELICSPTLRPPLIIGIVMQLSQQFSGINAVFYYSTSLFMSSGL 594

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
           +E++AKF TIGIGA+MV MT++SIPLMDR GRRTLHLYGLGGMFIFSIFITIS LI
Sbjct: 595 TEESAKFATIGIGAIMVVMTLVSIPLMDRTGRRTLHLYGLGGMFIFSIFITISFLI 650

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194864719|ref|XP_001971073.1| GG14750 [Drosophila erecta] gi|190652856|gb|EDV50099.1| GG14750 [Drosophila erecta]

 Score =  194 bits (493), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 104/116 (89%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           MR E+ AQQSES IS  EL+CS TLR PLIIGIVMQLSQQFSGINAVFYYST+LF SSGL
Sbjct: 531 MRAEERAQQSESHISTMELICSPTLRPPLIIGIVMQLSQQFSGINAVFYYSTSLFMSSGL 590

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
           +E++AKF TIGIGA+MV MT++SIPLMDR GRRTLHLYGLGGMFIFSIFITIS LI
Sbjct: 591 TEESAKFATIGIGAIMVVMTLVSIPLMDRTGRRTLHLYGLGGMFIFSIFITISFLI 646

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442629307|ref|NP_001261233.1| glucose transporter 1, isoform R [Drosophila melanogaster] gi|440215099|gb|AGB93928.1| glucose transporter 1, isoform R [Drosophila melanogaster]

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 104/116 (89%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           MR E+ AQQSES IS  EL+CS TLR PLIIGIVMQLSQQFSGINAVFYYST+LF SSGL
Sbjct: 532 MRAEERAQQSESHISTMELICSPTLRPPLIIGIVMQLSQQFSGINAVFYYSTSLFMSSGL 591

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
           +E++AKF TIGIGA+MV MT++SIPLMDR GRRTLHLYGLGGMFIFSIFITIS LI
Sbjct: 592 TEESAKFATIGIGAIMVVMTLVSIPLMDRTGRRTLHLYGLGGMFIFSIFITISFLI 647

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195490254|ref|XP_002093061.1| GE21113 [Drosophila yakuba] gi|194179162|gb|EDW92773.1| GE21113 [Drosophila yakuba]

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 104/116 (89%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           MR E+ AQQSES IS  EL+CS TLR PLIIGIVMQLSQQFSGINAVFYYST+LF SSGL
Sbjct: 511 MRAEERAQQSESHISTMELICSPTLRPPLIIGIVMQLSQQFSGINAVFYYSTSLFMSSGL 570

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
           +E++AKF TIGIGA+MV MT++SIPLMDR GRRTLHLYGLGGMFIFSIFITIS LI
Sbjct: 571 TEESAKFATIGIGAIMVVMTLVSIPLMDRTGRRTLHLYGLGGMFIFSIFITISFLI 626

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442629316|ref|NP_001261237.1| glucose transporter 1, isoform W [Drosophila melanogaster] gi|440215104|gb|AGB93932.1| glucose transporter 1, isoform W [Drosophila melanogaster]

 Score =  194 bits (492), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 104/116 (89%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           MR E+ AQQSES IS  EL+CS TLR PLIIGIVMQLSQQFSGINAVFYYST+LF SSGL
Sbjct: 481 MRAEERAQQSESHISTMELICSPTLRPPLIIGIVMQLSQQFSGINAVFYYSTSLFMSSGL 540

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
           +E++AKF TIGIGA+MV MT++SIPLMDR GRRTLHLYGLGGMFIFSIFITIS LI
Sbjct: 541 TEESAKFATIGIGAIMVVMTLVSIPLMDRTGRRTLHLYGLGGMFIFSIFITISFLI 596

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195586811|ref|XP_002083161.1| GD13586 [Drosophila simulans] gi|194195170|gb|EDX08746.1| GD13586 [Drosophila simulans]

 Score =  194 bits (492), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 104/116 (89%)

Query: 1   MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
           MR E+ AQQSES IS  EL+CS TLR PLIIGIVMQLSQQFSGINAVFYYST+LF SSGL
Sbjct: 481 MRAEERAQQSESHISTMELICSPTLRPPLIIGIVMQLSQQFSGINAVFYYSTSLFMSSGL 540

Query: 61  SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
           +E++AKF TIGIGA+MV MT++SIPLMDR GRRTLHLYGLGGMFIFSIFITIS LI
Sbjct: 541 TEESAKFATIGIGAIMVVMTLVSIPLMDRTGRRTLHLYGLGGMFIFSIFITISFLI 596

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
FB|FBgn0264574	600	Glut1 "Glucose transporter 1"	0.887	0.171	0.805	4.9e-39
UNIPROTKB|Q27994	509	SLC2A4 "Solute carrier family	0.870	0.198	0.543	2.7e-22
ZFIN|ZDB-GENE-030131-3158	488	slc2a1a "solute carrier family	0.870	0.206	0.514	8.4e-22
ZFIN|ZDB-GENE-040718-390	541	slc2a3a "solute carrier family	0.870	0.186	0.504	9.1e-22
UNIPROTKB|F1NIN0	443	SLC2A3 "Solute carrier family	0.870	0.227	0.504	9.4e-22
RGD|3706	493	Slc2a3 "solute carrier family	0.870	0.204	0.495	1.1e-21
UNIPROTKB|F1RF44	509	SLC2A4 "Solute carrier family	0.870	0.198	0.514	1.2e-21
MGI|MGI:95758	509	Slc2a4 "solute carrier family	0.870	0.198	0.514	1.2e-21
UNIPROTKB|F1NTJ1	475	SLC2A3 "Solute carrier family	0.870	0.212	0.504	1.3e-21
UNIPROTKB|F5H081	451	SLC2A4 "Solute carrier family	0.870	0.223	0.504	1.3e-21

FB|FBgn0264574 Glut1 "Glucose transporter 1" [Drosophila melanogaster (taxid:7227)]

 Score = 417 (151.9 bits), Expect = 4.9e-39, P = 4.9e-39
 Identities = 83/103 (80%), Positives = 92/103 (89%)

Query:     1 MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
             MR E+ AQQSES IS  EL+CS TLR PLIIGIVMQLSQQFSGINAVFYYST+LF SSGL
Sbjct:   434 MRAEERAQQSESHISTMELICSPTLRPPLIIGIVMQLSQQFSGINAVFYYSTSLFMSSGL 493

Query:    61 SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103
             +E++AKF TIGIGA+MV MT++SIPLMDR GRRTLHLYGLGGM
Sbjct:   494 TEESAKFATIGIGAIMVVMTLVSIPLMDRTGRRTLHLYGLGGM 536

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q27994 SLC2A4 "Solute carrier family 2, facilitated glucose transporter member 4" [Bos taurus (taxid:9913)]

 Score = 265 (98.3 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 56/103 (54%), Positives = 76/103 (73%)

Query:     1 MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
             ++ E+   + E  +S+ +LL S T R+PL+I IV+QLSQQ SGINAVFYYST++FES+G+
Sbjct:   260 LKEEKRKLERERPLSLLQLLGSHTHRQPLVIAIVLQLSQQLSGINAVFYYSTSIFESAGV 319

Query:    61 SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103
              EK A + TIG G V    T++S+ L++R GRRTLHL GL GM
Sbjct:   320 -EKPA-YATIGAGVVNTVFTLVSVFLVERAGRRTLHLLGLAGM 360

GO:0012505 "endomembrane system" evidence=ISS

GO:0032593 "insulin-responsive compartment" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0032869 "cellular response to insulin stimulus" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0071470 "cellular response to osmotic stress" evidence=IEA

GO:0070062 "extracellular vesicular exosome" evidence=IEA

GO:0050873 "brown fat cell differentiation" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0030140 "trans-Golgi network transport vesicle" evidence=IEA

GO:0012506 "vesicle membrane" evidence=IEA

GO:0010021 "amylopectin biosynthetic process" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-030131-3158 slc2a1a "solute carrier family 2 (facilitated glucose transporter), member 1a" [Danio rerio (taxid:7955)]

 Score = 260 (96.6 bits), Expect = 8.4e-22, P = 8.4e-22
 Identities = 53/103 (51%), Positives = 72/103 (69%)

Query:     1 MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
             MR E      E  +++ EL  SS  R+P+ I I++QLSQQFSGINAVFYYST +FE +G+
Sbjct:   244 MRDESRQMMREKTVTIPELFRSSLYRQPIFIAIMLQLSQQFSGINAVFYYSTGIFEKAGV 303

Query:    61 SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103
             SE    + TIG GAV    T++S+ +++R+GRR+LHL GL GM
Sbjct:   304 SEPV--YATIGAGAVNTAFTVVSLFIVERVGRRSLHLVGLMGM 344

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0061300 "cerebellum vasculature development" evidence=IMP

GO:0001885 "endothelial cell development" evidence=IMP

GO:0005886 "plasma membrane" evidence=IC

GO:0005355 "glucose transmembrane transporter activity" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0046323 "glucose import" evidence=IMP;IDA

GO:0008643 "carbohydrate transport" evidence=IEA

ZFIN|ZDB-GENE-040718-390 slc2a3a "solute carrier family 2 (facilitated glucose transporter), member 3a" [Danio rerio (taxid:7955)]

 Score = 261 (96.9 bits), Expect = 9.1e-22, P = 9.1e-22
 Identities = 52/103 (50%), Positives = 72/103 (69%)

Query:     1 MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
             M+ E      E K+++ EL  S+  R+PL I I++QLSQQ SGINAVFYYST +F+S+G+
Sbjct:   244 MKEESAKMAMEKKVTIPELFRSAAYRQPLFIAIMLQLSQQLSGINAVFYYSTGIFKSAGV 303

Query:    61 SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103
             ++    + TIG G V    T++S+ L++R GRRTLHL GLGGM
Sbjct:   304 TQPI--YATIGAGVVNTVFTVVSLFLVERAGRRTLHLIGLGGM 344

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1NIN0 SLC2A3 "Solute carrier family 2, facilitated glucose transporter member 3" [Gallus gallus (taxid:9031)]

 Score = 258 (95.9 bits), Expect = 9.4e-22, P = 9.4e-22
 Identities = 52/103 (50%), Positives = 69/103 (66%)

Query:     1 MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
             M+ E      E K ++ EL  S   R+P+II I +QLSQQ SGINAVFYYST +FE +G+
Sbjct:   239 MKEESAKMSQEKKATVLELFRSPNYRQPIIISITLQLSQQLSGINAVFYYSTGIFERAGI 298

Query:    61 SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103
             ++    + TIG G V    T++S+ L++R GRRTLHL GLGGM
Sbjct:   299 TQPV--YATIGAGVVNTVFTVVSLFLVERAGRRTLHLVGLGGM 339

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|3706 Slc2a3 "solute carrier family 2 (facilitated glucose transporter), member 3" [Rattus norvegicus (taxid:10116)]

 Score = 259 (96.2 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 51/103 (49%), Positives = 72/103 (69%)

Query:     1 MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
             M+ E I    E ++++ EL  S +  +PL+I +V+QLSQQFSGINAVFYYST +F+ +G+
Sbjct:   242 MKDESIRMSQEKQVTVLELFKSPSYFQPLLISVVLQLSQQFSGINAVFYYSTGIFQDAGV 301

Query:    61 SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103
              E    + TIG G V    T++S+ L++R GRRTLH+ GLGGM
Sbjct:   302 QEPI--YATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGM 342

GO:0002080 "acrosomal membrane" evidence=ISO

GO:0005355 "glucose transmembrane transporter activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005536 "glucose binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005901 "caveola" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IDA

GO:0015749 "monosaccharide transport" evidence=IDA

GO:0015758 "glucose transport" evidence=ISO;IDA;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016936 "galactoside binding" evidence=IDA

GO:0019900 "kinase binding" evidence=IPI

GO:0030672 "synaptic vesicle membrane" evidence=IDA

GO:0033222 "xylose binding" evidence=IDA

GO:0033300 "dehydroascorbic acid transporter activity" evidence=ISO;IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0046323 "glucose import" evidence=IDA

GO:0055056 "D-glucose transmembrane transporter activity" evidence=ISO;IDA

GO:0070837 "dehydroascorbic acid transport" evidence=ISO;IDA

UNIPROTKB|F1RF44 SLC2A4 "Solute carrier family 2, facilitated glucose transporter member 4" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 53/103 (51%), Positives = 74/103 (71%)

Query:     1 MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
             ++ E+   + E  +S+ +LL S T R+PLII IV+QLSQQ SGINAVFYYST++FE++G+
Sbjct:   260 LKEEKRQLEHERPLSLLQLLGSHTHRQPLIIAIVLQLSQQLSGINAVFYYSTSIFETAGV 319

Query:    61 SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103
              +    + TIG G V    T++S+ L++R GRRTLHL GL GM
Sbjct:   320 GQPA--YATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGM 360

GO:0016021 "integral to membrane" evidence=IEA

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

MGI|MGI:95758 Slc2a4 "solute carrier family 2 (facilitated glucose transporter), member 4" [Mus musculus (taxid:10090)]

 Score = 259 (96.2 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 53/103 (51%), Positives = 74/103 (71%)

Query:     1 MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
             ++ E+   + E  +S+ +LL S T R+PLII +V+QLSQQ SGINAVFYYST++FES+G+
Sbjct:   260 LKDEKRKLERERPMSLLQLLGSRTHRQPLIIAVVLQLSQQLSGINAVFYYSTSIFESAGV 319

Query:    61 SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103
              +    + TIG G V    T++S+ L++R GRRTLHL GL GM
Sbjct:   320 GQPA--YATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGM 360

GO:0005215 "transporter activity" evidence=IEA

GO:0005355 "glucose transmembrane transporter activity" evidence=ISO;IDA;TAS

GO:0005360 "insulin-responsive hydrogen:glucose symporter activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=ISO;IDA

GO:0005771 "multivesicular body" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0005905 "coated pit" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=ISO

GO:0010021 "amylopectin biosynthetic process" evidence=IDA

GO:0012506 "vesicle membrane" evidence=ISO

GO:0015758 "glucose transport" evidence=ISO;IDA;TAS

GO:0015992 "proton transport" evidence=TAS

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IDA;TAS

GO:0031982 "vesicle" evidence=ISO

GO:0032593 "insulin-responsive compartment" evidence=ISO;IDA

GO:0032869 "cellular response to insulin stimulus" evidence=ISO;IDA

GO:0034220 "ion transmembrane transport" evidence=TAS

GO:0035428 "hexose transmembrane transport" evidence=IDA;TAS

GO:0042383 "sarcolemma" evidence=ISO;IDA

GO:0042593 "glucose homeostasis" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;IDA

GO:0050873 "brown fat cell differentiation" evidence=IDA

GO:0055056 "D-glucose transmembrane transporter activity" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

GO:0070062 "extracellular vesicular exosome" evidence=IDA

GO:0071470 "cellular response to osmotic stress" evidence=IDA

UNIPROTKB|F1NTJ1 SLC2A3 "Solute carrier family 2, facilitated glucose transporter member 3" [Gallus gallus (taxid:9031)]

 Score = 258 (95.9 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 52/103 (50%), Positives = 69/103 (66%)

Query:     1 MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
             M+ E      E K ++ EL  S   R+P+II I +QLSQQ SGINAVFYYST +FE +G+
Sbjct:   243 MKEESAKMSQEKKATVLELFRSPNYRQPIIISITLQLSQQLSGINAVFYYSTGIFERAGI 302

Query:    61 SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103
             ++    + TIG G V    T++S+ L++R GRRTLHL GLGGM
Sbjct:   303 TQPV--YATIGAGVVNTVFTVVSLFLVERAGRRTLHLVGLGGM 343

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0002080 "acrosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0070837 "dehydroascorbic acid transport" evidence=IEA

UNIPROTKB|F5H081 SLC2A4 "Solute carrier family 2, facilitated glucose transporter member 4" [Homo sapiens (taxid:9606)]

 Score = 257 (95.5 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 52/103 (50%), Positives = 74/103 (71%)

Query:     1 MRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGL 60
             ++ E+   + E  +S+ +LL S T R+PLII +V+QLSQQ SGINAVFYYST++FE++G+
Sbjct:   250 LKDEKRKLERERPLSLLQLLGSRTHRQPLIIAVVLQLSQQLSGINAVFYYSTSIFETAGV 309

Query:    61 SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103
              +    + TIG G V    T++S+ L++R GRRTLHL GL GM
Sbjct:   310 GQPA--YATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGM 350

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q27994	GTR4_BOVIN	No assigned EC number	0.5172	0.9827	0.2239	yes	N/A
Q8IRI6	GTR1_DROME	No assigned EC number	0.8189	1.0	0.1933	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	116
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-24
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-20
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	3e-13

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 95.4 bits (238), Expect = 2e-24
 Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 2/108 (1%)

Query: 9   QSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFT 68
               K S  EL    T+R+ L++G+++Q+ QQ +GINA+FYYS  +FE+ GLS+      
Sbjct: 234 VEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLL--V 291

Query: 69  TIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLI 116
           TI +G V    T I+I L+DR GRR L L G  GM I  + + ++LL 
Sbjct: 292 TIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLG 339

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 84.3 bits (209), Expect = 2e-20
 Identities = 40/96 (41%), Positives = 58/96 (60%)

Query: 17  SELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVM 76
           S    +  +R+ L +G+V+Q  QQF+GINA+ YYS  +FE++G+S   A   +I +GAV 
Sbjct: 273 SLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVN 332

Query: 77  VTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112
              T ++I L+DR GRR L L G  GM I    + I
Sbjct: 333 FAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGI 368

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 29/77 (37%), Positives = 49/77 (63%)

Query: 29  LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD 88
           ++IG+++ + QQF GIN V YY+  +F++ G S   A   TI +G + +T T+++I  +D
Sbjct: 272 IVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD 331

Query: 89  RMGRRTLHLYGLGGMFI 105
           + GR+ L + G  GM I
Sbjct: 332 KFGRKPLQIIGALGMAI 348

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
KOG0569|consensus	485		99.7
KOG0254|consensus	513		99.35
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.12
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.1
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.1
PLN00028	476	nitrate transmembrane transporter; Provisional	99.09
PRK15075	434	citrate-proton symporter; Provisional	99.08
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.08
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.08
TIGR00891	405	2A0112 putative sialic acid transporter.	99.07
PRK10642	490	proline/glycine betaine transporter; Provisional	99.06
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.06
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.06
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.05
PRK12307	426	putative sialic acid transporter; Provisional	99.04
PRK05122	399	major facilitator superfamily transporter; Provisi	99.04
PRK10054	395	putative transporter; Provisional	99.03
PRK03893	496	putative sialic acid transporter; Provisional	99.03
TIGR00895	398	2A0115 benzoate transport.	99.03
PRK10504	471	putative transporter; Provisional	99.02
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.01
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.0
PRK09952	438	shikimate transporter; Provisional	98.99
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.99
PRK11663	434	regulatory protein UhpC; Provisional	98.99
PRK03633	381	putative MFS family transporter protein; Provision	98.98
PRK03699	394	putative transporter; Provisional	98.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.96
PRK03545	390	putative arabinose transporter; Provisional	98.96
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.95
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.95
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.95
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.93
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.93
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.93
PF12832	77	MFS_1_like: MFS_1 like family	98.93
PRK12382	392	putative transporter; Provisional	98.92
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.92
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.91
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.91
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.91
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.91
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.91
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.9
PRK09874	408	drug efflux system protein MdtG; Provisional	98.9
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.9
PRK12307	426	putative sialic acid transporter; Provisional	98.89
TIGR00901	356	2A0125 AmpG-related permease.	98.89
PRK10133	438	L-fucose transporter; Provisional	98.89
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.88
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.86
TIGR00891	405	2A0112 putative sialic acid transporter.	98.86
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.85
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.85
PRK10091	382	MFS transport protein AraJ; Provisional	98.85
PRK09528	420	lacY galactoside permease; Reviewed	98.85
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.84
PRK10489	417	enterobactin exporter EntS; Provisional	98.84
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.83
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.83
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.83
PRK09705	393	cynX putative cyanate transporter; Provisional	98.82
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.82
PRK15075	434	citrate-proton symporter; Provisional	98.81
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.8
PRK09705	393	cynX putative cyanate transporter; Provisional	98.78
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.78
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.78
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.77
PRK10642	490	proline/glycine betaine transporter; Provisional	98.77
TIGR00895	398	2A0115 benzoate transport.	98.77
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.76
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.76
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.76
PRK03633	381	putative MFS family transporter protein; Provision	98.76
TIGR00900	365	2A0121 H+ Antiporter protein.	98.76
PRK11043	401	putative transporter; Provisional	98.75
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.74
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.74
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.74
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.73
PRK03699	394	putative transporter; Provisional	98.73
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.73
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.72
TIGR00893	399	2A0114 d-galactonate transporter.	98.71
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.71
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.71
PRK10504	471	putative transporter; Provisional	98.7
PF13347	428	MFS_2: MFS/sugar transport protein	98.7
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.69
PRK03545	390	putative arabinose transporter; Provisional	98.68
PRK10133	438	L-fucose transporter; Provisional	98.68
PRK09528	420	lacY galactoside permease; Reviewed	98.68
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.67
TIGR00900	365	2A0121 H+ Antiporter protein.	98.67
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.66
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.65
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.65
PRK11043	401	putative transporter; Provisional	98.65
PRK11010	491	ampG muropeptide transporter; Validated	98.64
PRK09952	438	shikimate transporter; Provisional	98.63
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.63
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.63
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.62
TIGR00893	399	2A0114 d-galactonate transporter.	98.62
PRK11902	402	ampG muropeptide transporter; Reviewed	98.62
PRK11663	434	regulatory protein UhpC; Provisional	98.61
PRK10091	382	MFS transport protein AraJ; Provisional	98.61
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.59
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.59
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.59
PLN00028	476	nitrate transmembrane transporter; Provisional	98.59
PTZ00207	591	hypothetical protein; Provisional	98.58
TIGR00898	505	2A0119 cation transport protein.	98.58
PRK15011	393	sugar efflux transporter B; Provisional	98.57
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.57
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.56
KOG0253|consensus	528		98.56
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.55
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.54
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.54
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.54
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.52
PRK03893	496	putative sialic acid transporter; Provisional	98.51
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.51
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.5
TIGR00805	633	oat sodium-independent organic anion transporter.	98.49
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.48
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.48
KOG2615|consensus	451		98.47
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.47
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.47
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.46
PRK10429	473	melibiose:sodium symporter; Provisional	98.43
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.42
TIGR00898	505	2A0119 cation transport protein.	98.41
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.4
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.36
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.36
KOG2533|consensus	495		98.36
KOG2532|consensus	466		98.35
PRK09874	408	drug efflux system protein MdtG; Provisional	98.34
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.33
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.33
PRK15011	393	sugar efflux transporter B; Provisional	98.33
PRK10489	417	enterobactin exporter EntS; Provisional	98.32
KOG0252|consensus	538		98.29
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.29
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.28
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.28
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.27
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.26
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.26
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.23
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.22
COG2211	467	MelB Na+/melibiose symporter and related transport	98.22
KOG0254|consensus	513		98.21
PRK09669	444	putative symporter YagG; Provisional	98.19
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.19
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.19
PRK09848	448	glucuronide transporter; Provisional	98.18
PRK11462	460	putative transporter; Provisional	98.18
KOG0255|consensus	521		98.15
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.15
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.15
TIGR00805	633	oat sodium-independent organic anion transporter.	98.14
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.13
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.12
KOG1330|consensus	493		98.09
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.07
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.07
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.03
PRK11902	402	ampG muropeptide transporter; Reviewed	98.03
PRK12382	392	putative transporter; Provisional	98.02
PRK05122	399	major facilitator superfamily transporter; Provisi	98.01
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.98
PRK10429	473	melibiose:sodium symporter; Provisional	97.97
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.97
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.95
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.95
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.89
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.88
PRK09669	444	putative symporter YagG; Provisional	97.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.84
KOG0252|consensus	538		97.83
PRK10054	395	putative transporter; Provisional	97.82
TIGR00901	356	2A0125 AmpG-related permease.	97.77
PRK09848	448	glucuronide transporter; Provisional	97.75
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.72
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.69
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.67
KOG0569|consensus	485		97.67
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.66
KOG2504|consensus	509		97.63
PRK11010	491	ampG muropeptide transporter; Validated	97.61
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.6
KOG3762|consensus	618		97.57
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.57
PF13347	428	MFS_2: MFS/sugar transport protein	97.54
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.52
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.49
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.44
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.44
KOG4686|consensus	459		97.44
KOG0255|consensus	521		97.38
KOG3764|consensus	464		97.38
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.37
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.34
KOG2504|consensus	509		97.32
KOG0637|consensus	498		97.31
KOG2563|consensus	480		97.22
KOG0253|consensus	528		97.07
PRK11462	460	putative transporter; Provisional	97.07
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.05
KOG2325|consensus	488		97.03
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.76
COG2211	467	MelB Na+/melibiose symporter and related transport	96.69
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.64
KOG2532|consensus	466		96.63
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.6
KOG3626|consensus	735		96.49
COG0477	338	ProP Permeases of the major facilitator superfamil	96.47
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.3
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.22
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.16
KOG4332|consensus	454		95.83
KOG2563|consensus	480		95.59
KOG2816|consensus	463		95.12
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.04
KOG3574|consensus	510		94.94
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	94.83
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	94.6
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.17
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	94.08
KOG3626|consensus	735		93.96
PRK10207	489	dipeptide/tripeptide permease B; Provisional	93.81
KOG1237|consensus	571		93.4
KOG2533|consensus	495		93.38
COG2270	438	Permeases of the major facilitator superfamily [Ge	93.27
KOG3764|consensus	464		93.24
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	92.14
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.13
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	91.38
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	91.2
PTZ00207	591	hypothetical protein; Provisional	90.18
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	90.12
COG3202	509	ATP/ADP translocase [Energy production and convers	90.12
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	90.0
KOG1330|consensus	493		88.6
TIGR03733	248	lanti_perm_MutG lantibiotic protection ABC transpo	86.94
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	86.85
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	86.3
KOG4830|consensus	412		85.78
PF01788	40	PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynt	85.25
KOG2325|consensus	488		82.99
KOG3762|consensus	618		81.89
KOG3098|consensus	461		81.29
TIGR03732	241	lanti_perm_MutE lantibiotic protection ABC transpo	81.2
TIGR02230	100	ATPase_gene1 F0F1-ATPase subunit, putative. This m	80.99
PRK09584	500	tppB putative tripeptide transporter permease; Rev	80.5

>KOG0569|consensus

Probab=99.70  E-value=3.9e-16  Score=104.41  Aligned_cols=103  Identities=45%  Similarity=0.800  Sum_probs=95.3

Q ss_pred             ccchhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792         12 SKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG   91 (116)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g   91 (116)
                      ++.+++|+++++..|++..+++.+...++++|.+.+.+|...++++.|++..++.+.+...+.+..+.+++++++.||.|
T Consensus       254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g  333 (485)
T KOG0569|consen  254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG  333 (485)
T ss_pred             cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHhhhhHHHHHHHHHHHHHH
Q psy17792         92 RRTLHLYGLGGMFIFSIFITISL  114 (116)
Q Consensus        92 rr~~~~~~~~~~~~~~~~~~~~~  114 (116)
                      ||+.++.+..++.+....+.+..
T Consensus       334 RRpLll~~~~~~~~~~~~~~~~~  356 (485)
T KOG0569|consen  334 RRPLLLISLSLMAVALLLMSIAL  356 (485)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888887776553

>KOG0254|consensus

Probab=99.35  E-value=1.5e-11  Score=83.77  Aligned_cols=97  Identities=43%  Similarity=0.705  Sum_probs=84.8

Q ss_pred             hhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q psy17792         16 MSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTL   95 (116)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~   95 (116)
                      +.++++ +..+++.++++.+..++|+++++...||.+.+++..|.+... ........+...+++.++.++.||+|||+.
T Consensus       284 ~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l  361 (513)
T KOG0254|consen  284 WGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKL  361 (513)
T ss_pred             HHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            556664 567888999999999999999999999999999999988655 677788888999999999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHHHH
Q psy17792         96 HLYGLGGMFIFSIFITISL  114 (116)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~  114 (116)
                      ++.+...+.++..+++..+
T Consensus       362 ll~s~~~m~~~~~~~~~~~  380 (513)
T KOG0254|consen  362 LLFGAAGMSICLVILAVVG  380 (513)
T ss_pred             HHHhHHHHHHHHHHHHHHH
Confidence            9999999999888887654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.12  E-value=1.4e-09  Score=76.98  Aligned_cols=69  Identities=14%  Similarity=0.108  Sum_probs=57.6

Q ss_pred             hhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         44 INAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        44 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ...+....|.+.+++|++..+..+......++.+++.+++|+++||+|||+.++.+.++.+++.++.++
T Consensus       183 ~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~af  251 (742)
T TIGR01299       183 VFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSF  251 (742)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            344666788888899999988888999999999999999999999999999998887766665555443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.10  E-value=1.6e-09  Score=72.09  Aligned_cols=88  Identities=17%  Similarity=0.016  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792         26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI  105 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~  105 (116)
                      ++..+...++.++.+........+..|.+.+++|.+..+.++......++..++.++.|+++||+|||+++..+.++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~   85 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI   85 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence            33455555556666666666777888888899999999999999999999999999999999999999999888877777


Q ss_pred             HHHHHHHH
Q psy17792        106 FSIFITIS  113 (116)
Q Consensus       106 ~~~~~~~~  113 (116)
                      .....+++
T Consensus        86 ~~~~~~~~   93 (412)
T TIGR02332        86 ASTATMFA   93 (412)
T ss_pred             HHHHHHHh
Confidence            66665543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.10  E-value=1.2e-09  Score=74.28  Aligned_cols=97  Identities=16%  Similarity=0.123  Sum_probs=56.3

Q ss_pred             hhhhhhccccchH--HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhH------------HHHHHHHHHHHHHH
Q psy17792         15 SMSELLCSSTLRK--PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAK------------FTTIGIGAVMVTMT   80 (116)
Q Consensus        15 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------------~~~~~~~~~~~~~~   80 (116)
                      +++++++++..++  +..+.+...++.+...++....+.|.++++.|.+.....            .......++.+++.
T Consensus       273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~  352 (502)
T TIGR00887       273 SWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGY  352 (502)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677776422121  222222222333333334455567888888887654211            12233445667788


Q ss_pred             HHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         81 IISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        81 ~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      ++.++++||+|||++++.+..+.+++...++
T Consensus       353 ~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~  383 (502)
T TIGR00887       353 WVTVFLVDIIGRKPIQLMGFFILTVLFFVLG  383 (502)
T ss_pred             HHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Confidence            8999999999999998877766555544443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.09  E-value=2.1e-09  Score=72.85  Aligned_cols=84  Identities=11%  Similarity=-0.046  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      .+......++...........+.|.+.+++|.+..+..+......++..++.++.|+++||+|||+++..+.+...+..+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~  116 (476)
T PLN00028         37 AFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVF  116 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence            33334444444444445566677889999999998888888888888999999999999999999998887776666555


Q ss_pred             HHHH
Q psy17792        109 FITI  112 (116)
Q Consensus       109 ~~~~  112 (116)
                      ..+.
T Consensus       117 ~~~~  120 (476)
T PLN00028        117 CMSL  120 (476)
T ss_pred             HHHH
Confidence            4443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.08  E-value=2e-09  Score=71.97  Aligned_cols=62  Identities=19%  Similarity=0.186  Sum_probs=49.0

Q ss_pred             HhhchhhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhH
Q psy17792         40 QFSGINAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLG  101 (116)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~  101 (116)
                      +...+....+|.|.++++ .|.+..+.........++..++.++.|+++||+|||+++..+..
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~  312 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTV  312 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            344455667777877765 79988887777888888899999999999999999998776543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.08  E-value=3.1e-09  Score=72.25  Aligned_cols=86  Identities=15%  Similarity=0.081  Sum_probs=63.0

Q ss_pred             chHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHhhhhHHH
Q psy17792         25 LRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM-GRRTLHLYGLGGM  103 (116)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-grr~~~~~~~~~~  103 (116)
                      +++.+...+.......++.+....+...++.+++|++..++........+...++.+++|+++||+ |||+.+..+.+..
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            355555555555555665554444444444566899999888888888888899999999999999 9999998887776


Q ss_pred             HHHHHHH
Q psy17792        104 FIFSIFI  110 (116)
Q Consensus       104 ~~~~~~~  110 (116)
                      .+....+
T Consensus        87 ~lg~lll   93 (493)
T PRK15462         87 AIGHVVL   93 (493)
T ss_pred             HHHHHHH
Confidence            6655444

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.08  E-value=7.6e-09  Score=67.54  Aligned_cols=84  Identities=21%  Similarity=0.299  Sum_probs=55.5

Q ss_pred             chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy17792         14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR   92 (116)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr   92 (116)
                      .+.++.++++  +++............. .......+.|.+. ++.|.+..+.........+...++.++.++++||+||
T Consensus       208 ~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~  284 (394)
T TIGR00883       208 GPIRETLTKH--RKPFLLGLGLVIATTT-TFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGR  284 (394)
T ss_pred             CCHHHHHHhc--hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            3456666554  2223333333333333 3344445556655 6678888888888888888999999999999999999


Q ss_pred             hhHHhhhh
Q psy17792         93 RTLHLYGL  100 (116)
Q Consensus        93 r~~~~~~~  100 (116)
                      |+.+..+.
T Consensus       285 ~~~~~~~~  292 (394)
T TIGR00883       285 RPVLIIFT  292 (394)
T ss_pred             HHHHHHHH
Confidence            99776443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.07  E-value=3.7e-09  Score=69.41  Aligned_cols=84  Identities=11%  Similarity=-0.122  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      +.+...++..+.............|.+.++.|.+..+..+......++..++.++.|+++||+|||+++..+.++.++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~   91 (405)
T TIGR00891        12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGT   91 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            34444555555555566667777888889999999999999999999999999999999999999999988877666655


Q ss_pred             HHHH
Q psy17792        108 IFIT  111 (116)
Q Consensus       108 ~~~~  111 (116)
                      ...+
T Consensus        92 ~~~~   95 (405)
T TIGR00891        92 LACG   95 (405)
T ss_pred             HHHH
Confidence            5444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.06  E-value=4.7e-09  Score=71.28  Aligned_cols=86  Identities=20%  Similarity=0.254  Sum_probs=56.8

Q ss_pred             chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy17792         14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR   92 (116)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr   92 (116)
                      .++++++++  +++.........++.. ..++....|.|.++ +..|.+..+.........++..++.++.|+++||+||
T Consensus       239 ~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  315 (490)
T PRK10642        239 VSFKEIATK--HWRSLLTCIGLVIATN-VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGR  315 (490)
T ss_pred             CCHHHHHHH--hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            356666653  2444443333333333 33444555667666 4578887766666777778888999999999999999


Q ss_pred             hhHHhhhhHH
Q psy17792         93 RTLHLYGLGG  102 (116)
Q Consensus        93 r~~~~~~~~~  102 (116)
                      |+.+..+.++
T Consensus       316 r~~~~~~~~~  325 (490)
T PRK10642        316 RPFVILGSVA  325 (490)
T ss_pred             HHHHHHHHHH
Confidence            9988766543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.06  E-value=1.4e-09  Score=73.04  Aligned_cols=64  Identities=22%  Similarity=0.164  Sum_probs=54.1

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      ..+..|++.++ |.+..+..+......++..++.++.|+++||+|||++++.+.++.++..+.++
T Consensus        48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~  111 (452)
T PRK11273         48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG  111 (452)
T ss_pred             HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHH
Confidence            45667888777 99999999999999999999999999999999999999888777666655544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.06  E-value=8.7e-09  Score=68.74  Aligned_cols=85  Identities=44%  Similarity=0.733  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         27 KPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      ++.+....+.++.+........++.|++.++.|.+..+.........++..++.++.++++||+|||+.+..+..+..++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  362 (481)
T TIGR00879       283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            34455555556666666667788899999999998877778888888999999999999999999999988776665555


Q ss_pred             HHHHH
Q psy17792        107 SIFIT  111 (116)
Q Consensus       107 ~~~~~  111 (116)
                      ...++
T Consensus       363 ~~~~~  367 (481)
T TIGR00879       363 LFVLG  367 (481)
T ss_pred             HHHHH
Confidence            44443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.05  E-value=3.9e-09  Score=71.80  Aligned_cols=88  Identities=16%  Similarity=0.158  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc-ccchhHHhhhhHHHH
Q psy17792         26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRTLHLYGLGGMF  104 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~~~~~~~~~~  104 (116)
                      +|....++...+...++.+....+...++.+++|.+..+..+..........+..+++|+++|| +|||+++..+.++..
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~   92 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA   92 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence            5556666666667777776666777777778899999888888888887888888899999999 999999999998888


Q ss_pred             HHHHHHHHH
Q psy17792        105 IFSIFITIS  113 (116)
Q Consensus       105 ~~~~~~~~~  113 (116)
                      +..+.+++.
T Consensus        93 ~g~~~~~~~  101 (489)
T PRK10207         93 IGYFMTGMS  101 (489)
T ss_pred             HHHHHHHHh
Confidence            777665543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.04  E-value=4.9e-09  Score=69.71  Aligned_cols=84  Identities=12%  Similarity=0.085  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      .+.......+..........+..|.+.+++|.++.+..+......++..++.++.|+++||+|||+++..+.+..+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~   98 (426)
T PRK12307         19 ALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTG   98 (426)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence            33444444554555555667788888899999999888889999999999999999999999999999988877777665


Q ss_pred             HHHH
Q psy17792        109 FITI  112 (116)
Q Consensus       109 ~~~~  112 (116)
                      ..++
T Consensus        99 ~~~~  102 (426)
T PRK12307         99 LSGL  102 (426)
T ss_pred             HHHH
Confidence            5444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.04  E-value=3.9e-09  Score=69.68  Aligned_cols=80  Identities=11%  Similarity=0.082  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHHhhchhhhHHhHHH-HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792         26 RKPLIIGIVMQLSQQFSGINAVFYYSTA-LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF  104 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~  104 (116)
                      ++++.......+.... +........|. +.+++|.+..+.++......+...++.++.|+++||+|||+++..+.++.+
T Consensus        14 ~~~~~~l~~~~~~~~~-~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~   92 (399)
T PRK05122         14 TLRIVSIVMFTFISYL-TIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA   92 (399)
T ss_pred             cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence            4444443333333333 33444445554 567889999999999999999999999999999999999999998876655


Q ss_pred             HH
Q psy17792        105 IF  106 (116)
Q Consensus       105 ~~  106 (116)
                      +.
T Consensus        93 ~~   94 (399)
T PRK05122         93 LS   94 (399)
T ss_pred             HH
Confidence            43

>PRK10054 putative transporter; Provisional

Probab=99.03  E-value=6.3e-09  Score=68.93  Aligned_cols=72  Identities=15%  Similarity=0.043  Sum_probs=54.9

Q ss_pred             HhhchhhhHH-hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         40 QFSGINAVFY-YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        40 ~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      ...+.+.... ..+++.+++|.+..+.++......+...++.++.|+++||+|||+++..+.+...+....+.
T Consensus        19 ~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~   91 (395)
T PRK10054         19 LTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP   91 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH
Confidence            3444444444 44455567899999999999998999999999999999999999998887766655544443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.03  E-value=5.2e-09  Score=70.84  Aligned_cols=85  Identities=11%  Similarity=-0.073  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      +.+..+++..+.............|.+.+++|.+..+..+......++..++.++.|+++||+|||+++..+.+..++..
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   99 (496)
T PRK03893         20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGT   99 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            34444555555555555666777788889999999888888888899999999999999999999999988877666655


Q ss_pred             HHHHH
Q psy17792        108 IFITI  112 (116)
Q Consensus       108 ~~~~~  112 (116)
                      ...+.
T Consensus       100 ~~~~~  104 (496)
T PRK03893        100 LACGF  104 (496)
T ss_pred             HHHHH
Confidence            54443

>TIGR00895 2A0115 benzoate transport

Probab=99.03  E-value=5.2e-09  Score=68.46  Aligned_cols=81  Identities=19%  Similarity=0.176  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         31 IGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      .......+..........++.|.+.++.|.+..+..+......++..++.++.|+++||+|||+.+..+..+..+.....
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~   99 (398)
T TIGR00895        20 ILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLC   99 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            33333344444444566778899999999999888888888899999999999999999999999988877666655544


Q ss_pred             H
Q psy17792        111 T  111 (116)
Q Consensus       111 ~  111 (116)
                      .
T Consensus       100 ~  100 (398)
T TIGR00895       100 A  100 (398)
T ss_pred             H
Confidence            3

>PRK10504 putative transporter; Provisional

Probab=99.02  E-value=5.6e-09  Score=70.37  Aligned_cols=79  Identities=18%  Similarity=0.103  Sum_probs=61.7

Q ss_pred             HHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         33 IVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      +....+.............|.+.+++|.+..+..+......+...++.++.|+++||+|||++++.+..+..++.+..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   93 (471)
T PRK10504         15 VAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA   93 (471)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555667788999999999998888888888888899999999999999999999887766665554433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.01  E-value=4.3e-09  Score=70.97  Aligned_cols=86  Identities=13%  Similarity=0.014  Sum_probs=58.1

Q ss_pred             hhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q psy17792         16 MSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTL   95 (116)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~   95 (116)
                      ..+.+|++..|.     +.+.++..+.++....++.|++.++ ..+............+.+.+..+++|+++||+|+|++
T Consensus       245 ~~~vlk~~~~Wl-----lslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v  318 (462)
T PRK15034        245 QLPVLQRLHLWL-----LSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV  318 (462)
T ss_pred             HHHHhCCCchhH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH
Confidence            445666654432     3334556666667778788888766 3444333333445567788888999999999999999


Q ss_pred             HhhhhHHHHHHH
Q psy17792         96 HLYGLGGMFIFS  107 (116)
Q Consensus        96 ~~~~~~~~~~~~  107 (116)
                      +.++.++..++.
T Consensus       319 l~~~~i~~~i~~  330 (462)
T PRK15034        319 TLINFIFMAIFS  330 (462)
T ss_pred             HHHHHHHHHHHH
Confidence            988776555544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.00  E-value=1.8e-08  Score=67.37  Aligned_cols=84  Identities=17%  Similarity=0.145  Sum_probs=52.3

Q ss_pred             chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy17792         14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR   92 (116)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr   92 (116)
                      .+++++++++   +............+... +....|.|.++ ++.|.+..+.........+...++.++.|+++||+||
T Consensus       233 ~~~~~l~~~~---~~~~~~~~~~~~~~~~~-~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~gr  308 (432)
T PRK10406        233 GSLKGLWRNR---RAFIMVLGFTAAGSLCF-YTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGR  308 (432)
T ss_pred             ccHHHHHhhH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            3567777643   22222222222223333 33444556555 5678887777776777777778888899999999999


Q ss_pred             hhHHhhhhH
Q psy17792         93 RTLHLYGLG  101 (116)
Q Consensus        93 r~~~~~~~~  101 (116)
                      |+.+..+.+
T Consensus       309 r~~~~~~~~  317 (432)
T PRK10406        309 RTSMLCFGS  317 (432)
T ss_pred             hHHHHHHHH
Confidence            998766544

>PRK09952 shikimate transporter; Provisional

Probab=98.99  E-value=2.1e-08  Score=67.31  Aligned_cols=58  Identities=17%  Similarity=0.064  Sum_probs=40.8

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF  104 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~  104 (116)
                      ..+..++..++.|.+............+...++.++.|+++||+|||+.+..+.++..
T Consensus       270 ~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~  327 (438)
T PRK09952        270 TAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGT  327 (438)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            3344444445678877655455556677788888999999999999998877654433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.99  E-value=7.6e-09  Score=68.40  Aligned_cols=72  Identities=13%  Similarity=0.124  Sum_probs=58.0

Q ss_pred             HhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         40 QFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      ............|.+.+++|.++.+..+......++..++.++.|+++||+|||+++..+.....+..+...
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   98 (406)
T PRK11551         27 EGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATA   98 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            333334456667888899999999999999999999999999999999999999999888766665544433

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.99  E-value=6.3e-09  Score=69.66  Aligned_cols=87  Identities=15%  Similarity=0.112  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792         26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI  105 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~  105 (116)
                      ++.......+.++...........+.|.+.+++|.+..+..+......++..++.++.|++.||+|||+++..+.++..+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            33444444444444444444556778999999999999989999999999999999999999999999999888877776


Q ss_pred             HHHHHHH
Q psy17792        106 FSIFITI  112 (116)
Q Consensus       106 ~~~~~~~  112 (116)
                      ..+..+.
T Consensus       101 ~~~~~~~  107 (434)
T PRK11663        101 INILFGF  107 (434)
T ss_pred             HHHHHHH
Confidence            6655543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.98  E-value=9.9e-09  Score=67.54  Aligned_cols=78  Identities=8%  Similarity=-0.110  Sum_probs=63.3

Q ss_pred             HHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         35 MQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ...+...........+.|.+.++.|.+..+.++......++..++.++.|+++||+|||+.+..+.+...+.....+.
T Consensus        13 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~   90 (381)
T PRK03633         13 CGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL   90 (381)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334334445566777889999999999999999999999999999999999999999999998888777766555443

>PRK03699 putative transporter; Provisional

Probab=98.97  E-value=1.1e-08  Score=67.55  Aligned_cols=83  Identities=11%  Similarity=-0.003  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      ..+.....++.............|.+.+++|.+..+..+......++..++.++.|++.||+|||+++..+.++..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~   87 (394)
T PRK03699          8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVA   87 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            33333333443333334556677888899999999988888889999999999999999999999999888776665554


Q ss_pred             HHH
Q psy17792        109 FIT  111 (116)
Q Consensus       109 ~~~  111 (116)
                      ..+
T Consensus        88 l~~   90 (394)
T PRK03699         88 GLM   90 (394)
T ss_pred             HHH
Confidence            443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.96  E-value=1.1e-08  Score=66.90  Aligned_cols=71  Identities=20%  Similarity=0.156  Sum_probs=58.0

Q ss_pred             hchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         42 SGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        42 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      .+........|.+.+++|.+..+..+......++..++.++.|+++||+|||+.+..+.....+.......
T Consensus        19 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   89 (385)
T TIGR00710        19 LGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL   89 (385)
T ss_pred             HHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            34344455668888999999999999999999999999999999999999999998887776666555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.96  E-value=3.4e-08  Score=66.63  Aligned_cols=77  Identities=35%  Similarity=0.596  Sum_probs=61.8

Q ss_pred             HHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         35 MQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      ...+.+..+++...++.|++.++.|.+.....+......+...++.++.++++||+|||++++.+.++.+++.+.++
T Consensus       278 ~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~  354 (479)
T PRK10077        278 LSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG  354 (479)
T ss_pred             HHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHH
Confidence            34455666667778899999999998877677777778888999999999999999999999888877766655543

>PRK03545 putative arabinose transporter; Provisional

Probab=98.96  E-value=1.5e-08  Score=66.91  Aligned_cols=67  Identities=10%  Similarity=0.028  Sum_probs=56.3

Q ss_pred             hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ......|.+.+++|.+..+.++......+...++.++.|.++||+|||+++..+.....+.....+.
T Consensus        27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   93 (390)
T PRK03545         27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL   93 (390)
T ss_pred             HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence            3444568889999999999999999999999999999999999999999999887777766655544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.95  E-value=6.8e-09  Score=70.07  Aligned_cols=65  Identities=11%  Similarity=-0.012  Sum_probs=53.7

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      .....|.+.+++|.+..+.++......+...++.++.|+++||+|||+++..+.+..++..+.++
T Consensus        48 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~  112 (467)
T PRK09556         48 FKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFG  112 (467)
T ss_pred             hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHH
Confidence            34456888899999999999999999999999999999999999999998777666555544443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.95  E-value=1.3e-08  Score=67.04  Aligned_cols=82  Identities=16%  Similarity=0.130  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792         30 IIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF  109 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~  109 (116)
                      +.+.....+.+..+........|.+.+++|.+..+..+......+...++.++.|+++||+|||+.+..+..+..+....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            33444455555566566667789999999999988888888889999999999999999999999998887776666555


Q ss_pred             HH
Q psy17792        110 IT  111 (116)
Q Consensus       110 ~~  111 (116)
                      ..
T Consensus        85 ~~   86 (392)
T PRK10473         85 CS   86 (392)
T ss_pred             HH
Confidence            44

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.95  E-value=1.4e-08  Score=68.62  Aligned_cols=55  Identities=15%  Similarity=-0.025  Sum_probs=44.8

Q ss_pred             hhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhh
Q psy17792         45 NAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYG   99 (116)
Q Consensus        45 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~   99 (116)
                      ....++.|.++ ++.|++..+.........++..++.++.|+++||+|||+....+
T Consensus       275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~  330 (467)
T PRK09556        275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVAC  330 (467)
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            44556667555 56899988888888888899999999999999999999876544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.93  E-value=1.8e-08  Score=68.64  Aligned_cols=85  Identities=19%  Similarity=0.099  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      .+..+.+..+........++.-.|.+.+++|.+..+..+....+.+....+.++.|+++||+|||+++..+.++..+..+
T Consensus         7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~   86 (495)
T PRK14995          7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL   86 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            34445555666666666777788999999999999999999999999999999999999999999999998888877776


Q ss_pred             HHHHH
Q psy17792        109 FITIS  113 (116)
Q Consensus       109 ~~~~~  113 (116)
                      ..+.+
T Consensus        87 ~~~~a   91 (495)
T PRK14995         87 AAAFS   91 (495)
T ss_pred             HHHHc
Confidence            66543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.93  E-value=4e-09  Score=68.48  Aligned_cols=69  Identities=13%  Similarity=-0.008  Sum_probs=59.1

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~  113 (116)
                      +....+.|.+.+++|.+..+.++......++..++.++.|+++||+|||+++..+..+..+.....+..
T Consensus        20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~   88 (377)
T TIGR00890        20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA   88 (377)
T ss_pred             hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH
Confidence            345567899999999999999999999999999999999999999999999998887777666555443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.93  E-value=1.7e-08  Score=66.65  Aligned_cols=65  Identities=15%  Similarity=0.146  Sum_probs=54.1

Q ss_pred             hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      ......|.+.+++|.+..+..+......+...++.++.|+++||+|||+.+..+.....+..+..
T Consensus        26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   90 (394)
T PRK11652         26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVA   90 (394)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            33445678889999999999999999999999999999999999999999988776666555444

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.93  E-value=1.9e-08  Score=52.02  Aligned_cols=65  Identities=15%  Similarity=0.164  Sum_probs=55.2

Q ss_pred             HHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhH
Q psy17792         37 LSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLG  101 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~  101 (116)
                      .+..+++......|.|...++.|++..+.+....+..+..+++.+++|+++||.+|++....+..
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            34445555667778888999999999999999999999999999999999999999988765544

>PRK12382 putative transporter; Provisional

Probab=98.92  E-value=1.7e-08  Score=66.50  Aligned_cols=62  Identities=11%  Similarity=-0.030  Sum_probs=50.3

Q ss_pred             hhhHHhHHH-HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         45 NAVFYYSTA-LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        45 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      .......|. +.+++|.+..+.++......+...++.++.|+++||+|||+++..+.+...++
T Consensus        32 ~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         32 GLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA   94 (392)
T ss_pred             HHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence            333344454 45789999999999999999999999999999999999999998876655443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.92  E-value=1.5e-08  Score=68.36  Aligned_cols=79  Identities=13%  Similarity=0.027  Sum_probs=64.6

Q ss_pred             HHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         33 IVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      +....+.............|.+.+++|.+..+..+......++..++.++.|+++||+|||+++..+..+..+.....+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   85 (485)
T TIGR00711         7 LMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG   85 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence            3344444555556677788999999999999999999999999999999999999999999999988877776665544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.92  E-value=1.7e-08  Score=65.67  Aligned_cols=76  Identities=18%  Similarity=0.055  Sum_probs=61.3

Q ss_pred             HHHHhhchhhhHHhHHH-HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         37 LSQQFSGINAVFYYSTA-LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ++...........+.|. +.+++|.+..+..+......++..++.++.|+++||+|||+.+..+.+...+..+..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~   86 (366)
T TIGR00886        10 FFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL   86 (366)
T ss_pred             HHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            33334444556667774 77889999999999999999999999999999999999999999888777776665544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.91  E-value=2.4e-08  Score=66.22  Aligned_cols=86  Identities=9%  Similarity=0.025  Sum_probs=62.5

Q ss_pred             hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792         26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI  105 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~  105 (116)
                      |+.........+......+ ......|.+.+++|.++.+..+......+...++.++.|.++||+|||+.+..+.++.++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         19 WSAVFSVAFCVACLIIVEF-LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            5444433333333333222 333356778889999999988888889999999999999999999999999988888777


Q ss_pred             HHHHHHH
Q psy17792        106 FSIFITI  112 (116)
Q Consensus       106 ~~~~~~~  112 (116)
                      ..+..+.
T Consensus        98 ~~~~~~~  104 (394)
T PRK10213         98 SCLLVSF  104 (394)
T ss_pred             HHHHHHH
Confidence            6655543

>TIGR00896 CynX cyanate transporter

Probab=98.91  E-value=1.7e-08  Score=65.73  Aligned_cols=62  Identities=15%  Similarity=0.033  Sum_probs=47.5

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc-chhHHhhhhHHHHHH
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG-RRTLHLYGLGGMFIF  106 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g-rr~~~~~~~~~~~~~  106 (116)
                      .....+.|.+.++.|.+..+.........++..++.++.+++.||++ ||+....+.....++
T Consensus       214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  276 (355)
T TIGR00896       214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG  276 (355)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence            34455678778888998888888888899999999999999999994 555555555444443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.91  E-value=1.4e-08  Score=65.92  Aligned_cols=58  Identities=16%  Similarity=-0.036  Sum_probs=46.1

Q ss_pred             HHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         51 STALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        51 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      .+.+.++.|.+..+.........+...++.++.++++||+|||+.+..+.....+...
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  285 (377)
T TIGR00890       228 YKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMA  285 (377)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence            3445677888877777888888999999999999999999999988777665555443

>TIGR00897 2A0118 polyol permease family

Probab=98.91  E-value=1.9e-08  Score=66.68  Aligned_cols=56  Identities=11%  Similarity=-0.012  Sum_probs=45.8

Q ss_pred             hchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh
Q psy17792         42 SGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL   97 (116)
Q Consensus        42 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~   97 (116)
                      .+......+.|.+.++.|.+..+.........++..++.+..|+++||+|||+...
T Consensus       236 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  291 (402)
T TIGR00897       236 IGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR  291 (402)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            34455566778888889999888777777788899999999999999999988653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.91  E-value=2.5e-08  Score=67.69  Aligned_cols=83  Identities=16%  Similarity=0.153  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhhchhhhHHhHHHHH-hh--cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc-ccchhHHhhhhHHHH
Q psy17792         29 LIIGIVMQLSQQFSGINAVFYYSTALF-ES--SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRTLHLYGLGGMF  104 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~~~~~~~~~~  104 (116)
                      ........++..++. +....+.|.++ ++  +|.+..+.........+...++.+++|+++|| +|||+++..+.++.+
T Consensus        12 ~~~l~~~~~~~~~~~-~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~   90 (475)
T TIGR00924        12 LFTLFFVELWERFSY-YGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM   90 (475)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence            333333334444444 44444455554 44  79999999999999999999999999999999 899999999888777


Q ss_pred             HHHHHHHH
Q psy17792        105 IFSIFITI  112 (116)
Q Consensus       105 ~~~~~~~~  112 (116)
                      +....++.
T Consensus        91 ~g~~~~~~   98 (475)
T TIGR00924        91 LGHFMLAM   98 (475)
T ss_pred             HHHHHHHh
Confidence            76665544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.90  E-value=2.7e-08  Score=65.65  Aligned_cols=93  Identities=17%  Similarity=0.201  Sum_probs=69.6

Q ss_pred             hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792         15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR   93 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr   93 (116)
                      .++.++++++.|.     +.+.++..+.++.....++|.+++ +.|.+..++..........+...-+.+|+++||+|.+
T Consensus       210 ~~~~v~~~~~~W~-----lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~  284 (417)
T COG2223         210 QLKAVFSNKDTWL-----LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR  284 (417)
T ss_pred             HHHHHhcCcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch
Confidence            3556666654443     444566667777777767776554 6899998888888888888888888999999999999


Q ss_pred             hHHhhhhHHHHHHHHHHHH
Q psy17792         94 TLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~  112 (116)
                      |+......+++++......
T Consensus       285 rv~~~~f~~~~~~~~~l~~  303 (417)
T COG2223         285 RVTLAVFVGMALAAALLSL  303 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHc
Confidence            9988887777776665543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.90  E-value=4.4e-08  Score=64.72  Aligned_cols=76  Identities=17%  Similarity=0.091  Sum_probs=55.2

Q ss_pred             HHHHHhhchhhhHHhHHHHHhhcCCCcchh-----HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         36 QLSQQFSGINAVFYYSTALFESSGLSEKTA-----KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      ..+....+......+.|.+.+++|.+..+.     ........+...++.++.|+++||+|||+.+..+.....+.....
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  101 (408)
T PRK09874         22 GCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLM  101 (408)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHH
Confidence            333344444555667788888888886543     456667778889999999999999999999988776666655444


Q ss_pred             H
Q psy17792        111 T  111 (116)
Q Consensus       111 ~  111 (116)
                      .
T Consensus       102 ~  102 (408)
T PRK09874        102 G  102 (408)
T ss_pred             H
Confidence            3

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.90  E-value=3.7e-08  Score=65.91  Aligned_cols=80  Identities=10%  Similarity=-0.114  Sum_probs=55.2

Q ss_pred             HHHHHHHHhhchhhhHHhHHHHHhhcC---CCcchh---HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         33 IVMQLSQQFSGINAVFYYSTALFESSG---LSEKTA---KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      ..+..+..........+..|.+.++++   .+..+.   ........++..++++++|+++||+|||+++..+....++.
T Consensus        27 ~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~  106 (432)
T PRK10406         27 ASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFG  106 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            334444555666667778888888764   333332   22233445566699999999999999999999988888777


Q ss_pred             HHHHHH
Q psy17792        107 SIFITI  112 (116)
Q Consensus       107 ~~~~~~  112 (116)
                      .+..++
T Consensus       107 ~~~~~~  112 (432)
T PRK10406        107 SLVIAC  112 (432)
T ss_pred             HHHHhh
Confidence            666544

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.89  E-value=4.1e-08  Score=65.31  Aligned_cols=90  Identities=19%  Similarity=0.166  Sum_probs=58.6

Q ss_pred             hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792         15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT   94 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~   94 (116)
                      ++++.++++..+... .... ..+...........+.|.+.++.|.+..+.........++..++.++.+++.||+|||+
T Consensus       220 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  297 (426)
T PRK12307        220 SMKGLFNRAQFPLTL-CVFI-VLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK  297 (426)
T ss_pred             HHHHHHhhchHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            355667665443222 2122 22222222223445667777778888877777777788899999999999999999999


Q ss_pred             HHhhhhHHHHHH
Q psy17792         95 LHLYGLGGMFIF  106 (116)
Q Consensus        95 ~~~~~~~~~~~~  106 (116)
                      .+..+.+...+.
T Consensus       298 ~~~~~~~~~~~~  309 (426)
T PRK12307        298 TFSIGLLMSFLF  309 (426)
T ss_pred             HHHHHHHHHHHH
Confidence            887776554443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.89  E-value=3.3e-08  Score=64.41  Aligned_cols=93  Identities=10%  Similarity=0.017  Sum_probs=56.5

Q ss_pred             hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHH-HHHHHHHHHHHHhhhcccch
Q psy17792         15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIG-AVMVTMTIISIPLMDRMGRR   93 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~l~dr~grr   93 (116)
                      +++++++++..++ ........++.+... .....+.|.+.++.|.+..+......... +...++.++++++.||+|||
T Consensus       198 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~  275 (356)
T TIGR00901       198 PIREFFQRKNMIQ-ALLLLLLIVLYKLGD-SAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL  275 (356)
T ss_pred             HHHHHHHhcCchH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            4455565543222 222222233333333 33333445555668888877666555444 56789999999999999999


Q ss_pred             hHHhhhhHHHHHHHHH
Q psy17792         94 TLHLYGLGGMFIFSIF  109 (116)
Q Consensus        94 ~~~~~~~~~~~~~~~~  109 (116)
                      +.+..+.++.++....
T Consensus       276 ~~l~~~~~~~~~~~~~  291 (356)
T TIGR00901       276 YALLLFGIVQALTNAG  291 (356)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9887777665554443

>PRK10133 L-fucose transporter; Provisional

Probab=98.89  E-value=4.8e-08  Score=65.68  Aligned_cols=67  Identities=12%  Similarity=-0.039  Sum_probs=59.2

Q ss_pred             hhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         44 INAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        44 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      ......+.|.+.+++|.+..+.++......++..++.++.|.++||+|||+++..+..+..+..+.+
T Consensus        42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~  108 (438)
T PRK10133         42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF  108 (438)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            3566778899988999999999999999999999999999999999999999999888877776553

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.88  E-value=4.7e-08  Score=64.66  Aligned_cols=64  Identities=20%  Similarity=0.251  Sum_probs=50.9

Q ss_pred             chhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         43 GINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      .......+.|.+.++.|.+..+.........++..++.++.|++.||+|||+.+..+.....+.
T Consensus       235 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~  298 (406)
T PRK11551        235 VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILAS  298 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3344555678888888998888888888888999999999999999999999887655444433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.86  E-value=5.7e-08  Score=66.36  Aligned_cols=93  Identities=15%  Similarity=0.124  Sum_probs=60.7

Q ss_pred             hhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc-ccchhH
Q psy17792         17 SELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRTL   95 (116)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~   95 (116)
                      .+.++++   +.....+...++...+.+....+..+++.+++|.+..+................+++|+++|| +|||+.
T Consensus        14 ~~~~~~p---~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~   90 (500)
T PRK09584         14 LNAFKQP---KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV   90 (500)
T ss_pred             hhhhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence            3455544   334444444555555554444555555557899988877666665555555556789999999 599999


Q ss_pred             HhhhhHHHHHHHHHHHH
Q psy17792         96 HLYGLGGMFIFSIFITI  112 (116)
Q Consensus        96 ~~~~~~~~~~~~~~~~~  112 (116)
                      +..+.++..+....+++
T Consensus        91 ~~~g~~~~~ig~~l~~~  107 (500)
T PRK09584         91 IMLGAIVLAIGYALVAW  107 (500)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99888777766555543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.86  E-value=7.6e-08  Score=63.26  Aligned_cols=56  Identities=21%  Similarity=0.033  Sum_probs=45.0

Q ss_pred             HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792         48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM  103 (116)
Q Consensus        48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~  103 (116)
                      .++.+++.++.|.+..+.........++..++.++.++++||+|||+.+..+....
T Consensus       259 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~  314 (405)
T TIGR00891       259 DLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG  314 (405)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence            34444555568898888888888889999999999999999999999887665543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.85  E-value=1.5e-08  Score=67.56  Aligned_cols=63  Identities=13%  Similarity=-0.147  Sum_probs=48.8

Q ss_pred             HHhHHHHHhhcCCC--------cchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         48 FYYSTALFESSGLS--------EKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        48 ~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      ....|.+..+.+.+        ..+..+......++..++.++.|+++||+|||++++.+.++..+.....
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~  118 (481)
T TIGR00879        48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILM  118 (481)
T ss_pred             hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            33445555555555        6778888899999999999999999999999999988777666655544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.85  E-value=4.4e-08  Score=64.92  Aligned_cols=67  Identities=19%  Similarity=0.156  Sum_probs=54.3

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      .......|.+.+++|.+..+..+......++..++.++.|.++||+|||+++..+.....++.....
T Consensus        30 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~   96 (406)
T PRK15402         30 DMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAIL   96 (406)
T ss_pred             hhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            3444455677789999998888888888999999999999999999999999888776666655443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.85  E-value=4.1e-08  Score=64.72  Aligned_cols=69  Identities=17%  Similarity=0.069  Sum_probs=58.4

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~  113 (116)
                      .......|.+.+++|.+..+.++......++..++.++.|++.||+|||+++..+....++..+..+..
T Consensus        20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~   88 (382)
T PRK10091         20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS   88 (382)
T ss_pred             HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh
Confidence            345557788889999999998999999999999999999999999999999998887777766655543

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.85  E-value=5.4e-08  Score=64.85  Aligned_cols=56  Identities=14%  Similarity=0.214  Sum_probs=45.9

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG  102 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~  102 (116)
                      ..++..++.++.|.+..+.+.......+...++.++.|+++||+|||++++.+..+
T Consensus        30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~   85 (420)
T PRK09528         30 FSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISG   85 (420)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            33444444455999999999999999999999999999999999999988765443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.84  E-value=5.8e-08  Score=65.55  Aligned_cols=68  Identities=19%  Similarity=0.088  Sum_probs=54.9

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      .....+.|.+.+++|.+..+..+......+...++.++.|+++||+|||++++.+.++..+..+..+.
T Consensus        36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~  103 (455)
T TIGR00892        36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASF  103 (455)
T ss_pred             cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHH
Confidence            33455678888999999988888888888888889999999999999999998887666665555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.84  E-value=1.7e-08  Score=67.15  Aligned_cols=63  Identities=16%  Similarity=0.062  Sum_probs=51.6

Q ss_pred             hhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         44 INAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        44 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      ........|.+.++.+.+..+.++......+...++.++.|+++||+|||+++..+....++.
T Consensus        33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~   95 (417)
T PRK10489         33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLG   95 (417)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHH
Confidence            345566778888888888888899999999999999999999999999999887765544433

>TIGR00897 2A0118 polyol permease family

Probab=98.83  E-value=5.4e-08  Score=64.58  Aligned_cols=61  Identities=15%  Similarity=0.066  Sum_probs=51.2

Q ss_pred             HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      ..+.|.+.++.|.+..+.........+...++.++.|++.||+|||+++..+.....+...
T Consensus        33 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~   93 (402)
T TIGR00897        33 QGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHA   93 (402)
T ss_pred             HHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            3345556688999999999999999999999999999999999999999887776665543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.83  E-value=5.7e-08  Score=64.22  Aligned_cols=90  Identities=14%  Similarity=0.124  Sum_probs=65.4

Q ss_pred             hhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q psy17792         16 MSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTL   95 (116)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~   95 (116)
                      ..+++|++..+..    .....+.....+....|..|++.+..|++.+...+....+++++++|+.++|+++|| +.|+.
T Consensus       204 ~~~~l~~p~v~~~----l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~  278 (394)
T COG2814         204 LLRLLRRPGVLLG----LLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA  278 (394)
T ss_pred             HHHHhcCchHHHH----HHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH
Confidence            4566666644432    222333333344556788888888899999999999999999999999999999999 88888


Q ss_pred             HhhhhHHHHHHHHHH
Q psy17792         96 HLYGLGGMFIFSIFI  110 (116)
Q Consensus        96 ~~~~~~~~~~~~~~~  110 (116)
                      +.......++....+
T Consensus       279 l~~~~~l~a~~~l~l  293 (394)
T COG2814         279 LIAALLLLALALLAL  293 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777665555554443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.83  E-value=1.7e-11  Score=81.94  Aligned_cols=95  Identities=41%  Similarity=0.655  Sum_probs=75.7

Q ss_pred             hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792         15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT   94 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~   94 (116)
                      +++++++++.+++++...+.+.++.+..+++...+|.|.+.++.+.+..  ........+...++.+++.++.||+|||+
T Consensus       240 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~  317 (451)
T PF00083_consen  240 SWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRK  317 (451)
T ss_pred             eeeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence            4677887766677787778888888888888888999999988887776  34555666778888888899999999999


Q ss_pred             HHhhhhHHHHHHHHHHH
Q psy17792         95 LHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        95 ~~~~~~~~~~~~~~~~~  111 (116)
                      .++.+..+++++...++
T Consensus       318 ~~i~~~~~~~~~~~~~~  334 (451)
T PF00083_consen  318 LLIIGLLLMAICSLILG  334 (451)
T ss_pred             ccccccccccccccccc
Confidence            99988877776665553

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.82  E-value=4.6e-08  Score=64.79  Aligned_cols=65  Identities=12%  Similarity=0.082  Sum_probs=51.3

Q ss_pred             chhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         43 GINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      ++.....+.|.++++.|.+..+.........+++.++.++.+++.||+|||+....+..+..+..
T Consensus       220 ~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~  284 (393)
T PRK09705        220 GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGF  284 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence            33445556676677789998888888888999999999999999999999998877665544443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.82  E-value=2e-08  Score=65.24  Aligned_cols=68  Identities=18%  Similarity=0.131  Sum_probs=58.2

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ....+..|++.+++|.+..+.++......++..++.++.|+++||+|||+++..+.++..+..+....
T Consensus        12 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   79 (379)
T TIGR00881        12 KNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF   79 (379)
T ss_pred             HhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH
Confidence            44556678888999999999999999999999999999999999999999999888777766665544

>PRK15075 citrate-proton symporter; Provisional

Probab=98.81  E-value=8.2e-08  Score=64.32  Aligned_cols=86  Identities=15%  Similarity=0.031  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHH-HH-----HHHHHHHHHHHHHHHhhhcccchhHHhhhhH
Q psy17792         28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFT-TI-----GIGAVMVTMTIISIPLMDRMGRRTLHLYGLG  101 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~-----~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~  101 (116)
                      +.....++..+..........+..|.+.++++.+..+.... ..     ...+...+++++.|+++||+|||+.++.+..
T Consensus        15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   94 (434)
T PRK15075         15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS   94 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence            34555666677777777788899999999998876553222 11     1123335788999999999999999999888


Q ss_pred             HHHHHHHHHHHH
Q psy17792        102 GMFIFSIFITIS  113 (116)
Q Consensus       102 ~~~~~~~~~~~~  113 (116)
                      +..+..+..+++
T Consensus        95 ~~~~~~~l~~~~  106 (434)
T PRK15075         95 IMASGTLLIAFV  106 (434)
T ss_pred             HHHHHHHHHHhC
Confidence            877776666544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.80  E-value=1.2e-07  Score=62.65  Aligned_cols=62  Identities=18%  Similarity=0.229  Sum_probs=48.5

Q ss_pred             hchhhhHHhHH-HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792         42 SGINAVFYYST-ALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM  103 (116)
Q Consensus        42 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~  103 (116)
                      .+......+.| ++.++.|.+..+.........+...++.++.|+++||+|||+.++.+....
T Consensus        16 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~   78 (396)
T TIGR00882        16 FIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGL   78 (396)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            33344444444 445568999999999999999999999999999999999999987654433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.78  E-value=6.6e-08  Score=64.04  Aligned_cols=69  Identities=16%  Similarity=0.021  Sum_probs=61.2

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~  113 (116)
                      .......|.+.+++|.+..+.++......++..++.++.|+++||+|||+++..+..+.+++.+..+++
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a   94 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY   94 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC
Confidence            345567789999999999999999999999999999999999999999999999999988888777654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.78  E-value=2.5e-07  Score=62.64  Aligned_cols=85  Identities=11%  Similarity=0.003  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHhhchhhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         28 PLIIGIVMQLSQQFSGINAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      +.+....+.+...+..........+.+.+ ++|++..+..+...+..+...++.++.|++.||+|.|+++..+.+...+.
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~  113 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP  113 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            44444555555555555555555555555 79999999999999899899999899999999999999998888777666


Q ss_pred             HHHHHH
Q psy17792        107 SIFITI  112 (116)
Q Consensus       107 ~~~~~~  112 (116)
                      ....++
T Consensus       114 ~~~~~~  119 (462)
T PRK15034        114 CVWLGI  119 (462)
T ss_pred             HHHHHH
Confidence            665554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.78  E-value=1.2e-07  Score=61.16  Aligned_cols=67  Identities=21%  Similarity=0.132  Sum_probs=54.9

Q ss_pred             hhhHHhHH-HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         45 NAVFYYST-ALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        45 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      .......| .+.+++|.+..+..+......+...++.++.|+++||+|||+++..+.++.++......
T Consensus        13 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen   13 SIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence            34455566 77788999999999999999999999999999999999999998888887777744333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.77  E-value=1.2e-07  Score=62.84  Aligned_cols=65  Identities=15%  Similarity=0.130  Sum_probs=47.5

Q ss_pred             HHHHHHHHhhchhhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc--cchhHHhh
Q psy17792         33 IVMQLSQQFSGINAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM--GRRTLHLY   98 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~~~~   98 (116)
                      +....+....=+ .+.-|.|.++ +..|++..++.+....+=.++++|++++||++||+  |||.+...
T Consensus       258 a~a~vfvYivR~-gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~  325 (448)
T COG2271         258 ALANVFVYVVRY-GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMAL  325 (448)
T ss_pred             HHHHHHHHHHHH-HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHH
Confidence            333444444443 4455556544 56789999999999999999999999999999997  67765543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.77  E-value=1.7e-07  Score=63.83  Aligned_cols=85  Identities=13%  Similarity=-0.029  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcch-hHH-----HHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792         29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKT-AKF-----TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG  102 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~-----~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~  102 (116)
                      .+....+..+..........+..|.+.++++.+.++ ...     ......++..++.+++|+++||+|||+++..+.++
T Consensus        17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l   96 (490)
T PRK10642         17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI   96 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            444444555556666667777888887776533322 111     13445677889999999999999999999999988


Q ss_pred             HHHHHHHHHHH
Q psy17792        103 MFIFSIFITIS  113 (116)
Q Consensus       103 ~~~~~~~~~~~  113 (116)
                      .+++.+..+++
T Consensus        97 ~~i~~~~~a~~  107 (490)
T PRK10642         97 MSISTFCIGLI  107 (490)
T ss_pred             HHHHHHHHHhc
Confidence            88877776654

>TIGR00895 2A0115 benzoate transport

Probab=98.77  E-value=1.8e-07  Score=61.30  Aligned_cols=59  Identities=24%  Similarity=0.131  Sum_probs=47.3

Q ss_pred             HhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhh
Q psy17792         40 QFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLY   98 (116)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~   98 (116)
                      ..........+.|++.++.|.+..+.........++..++.++.++++||+|||+....
T Consensus       262 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  320 (398)
T TIGR00895       262 LLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALL  320 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            33344556667788888899998888888888899999999999999999999955443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.76  E-value=1.2e-07  Score=60.91  Aligned_cols=73  Identities=22%  Similarity=0.159  Sum_probs=59.6

Q ss_pred             HhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         40 QFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ...+........|.+.++.|.+..+..+......+...++.++.|+++||+|||+.+..+.....+.......
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~   83 (352)
T cd06174          11 SGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF   83 (352)
T ss_pred             HHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence            3334455666778888888999999999999999999999999999999999999988888777766655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.76  E-value=2.1e-07  Score=66.26  Aligned_cols=45  Identities=20%  Similarity=0.208  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         68 TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ...+..++.+++.++.++++||+|||++++.+.++.+++++++++
T Consensus       600 ~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~  644 (742)
T TIGR01299       600 VNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSF  644 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            355667888999999999999999999998888777776655443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.76  E-value=1.3e-07  Score=63.80  Aligned_cols=52  Identities=13%  Similarity=-0.001  Sum_probs=44.1

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         59 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        59 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      +.+..+..+......++..++.++.|+++||+|||+++..+..+..++....
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~  102 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGS  102 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            6777788888999999999999999999999999999998877766554433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.76  E-value=1.2e-07  Score=62.51  Aligned_cols=58  Identities=14%  Similarity=0.077  Sum_probs=45.9

Q ss_pred             HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792         48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI  105 (116)
Q Consensus        48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~  105 (116)
                      ..+.|.+.++.|.+..+.........+...++.++.+++.||+|||+.+..+.....+
T Consensus       220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~  277 (381)
T PRK03633        220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVIL  277 (381)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHH
Confidence            3456777777888887777777778888999999999999999999988766554444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.76  E-value=1.1e-07  Score=61.53  Aligned_cols=66  Identities=11%  Similarity=-0.024  Sum_probs=53.9

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      .......|.+..+.+.+..+..+......+...++.++.|+++||+|||+++..+..+..+.....
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900        16 AITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            445556677778889988898999999999999999999999999999999988776655544443

>PRK11043 putative transporter; Provisional

Probab=98.75  E-value=1.8e-07  Score=61.92  Aligned_cols=62  Identities=21%  Similarity=0.103  Sum_probs=51.6

Q ss_pred             hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      ..|.+.+++|.+..+..+......++..++.++.|+++||+|||+.+..+.....+......
T Consensus        28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   89 (401)
T PRK11043         28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML   89 (401)
T ss_pred             hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence            34556788999999999999999999999999999999999999999887766665554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.74  E-value=1e-07  Score=62.14  Aligned_cols=60  Identities=22%  Similarity=0.158  Sum_probs=44.6

Q ss_pred             hhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792         46 AVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI  105 (116)
Q Consensus        46 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~  105 (116)
                      ....+.|.+. +..|.+..+.........+...++.++.++++||+|||+....+......
T Consensus       243 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~  303 (366)
T TIGR00886       243 GVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAM  303 (366)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHH
Confidence            3344445555 45788888888788888888999999999999999998877655544333

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.74  E-value=1.4e-07  Score=62.17  Aligned_cols=92  Identities=14%  Similarity=0.010  Sum_probs=61.6

Q ss_pred             hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792         15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT   94 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~   94 (116)
                      +.++++|+++.+.-    ....++.+.. ......+.|.+.++.|.++.+.........+...++..+.+++.||+|+|+
T Consensus       197 ~~~~~l~~~~~~~~----l~~~~l~~~~-~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~  271 (382)
T TIGR00902       197 AFIALLKNPMNLRF----LAAVCLIQGA-HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD  271 (382)
T ss_pred             hHHHHHcChHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH
Confidence            35566666543321    2222222222 233333445556778999988888777778888888899999999999999


Q ss_pred             HHhhhhHHHHHHHHHHH
Q psy17792         95 LHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        95 ~~~~~~~~~~~~~~~~~  111 (116)
                      .+..+.+...+.....+
T Consensus       272 ~l~~~~~~~~~~~~~~~  288 (382)
T TIGR00902       272 LLLISAIACVGRWAIIG  288 (382)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99888877776655544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.74  E-value=2.4e-07  Score=61.85  Aligned_cols=66  Identities=12%  Similarity=0.040  Sum_probs=57.3

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      .......|.+.+++|.+..+.++......++..+++++.+++.||+|||+.+..+..+.++....+
T Consensus        20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~   85 (410)
T TIGR00885        20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF   85 (410)
T ss_pred             HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            445567788899999999999999999999999999999999999999999999887777665543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.73  E-value=1.4e-07  Score=62.91  Aligned_cols=66  Identities=15%  Similarity=0.020  Sum_probs=54.3

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ...-.|.+.+++|.+.....+......++..++.++.|+++||+|||+++..+..+..++....+.
T Consensus        35 ~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  100 (413)
T PRK15403         35 IQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF  100 (413)
T ss_pred             hccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            344455677889999988888888889999999999999999999999999888777766655544

>PRK03699 putative transporter; Provisional

Probab=98.73  E-value=1.5e-07  Score=62.30  Aligned_cols=63  Identities=8%  Similarity=-0.048  Sum_probs=49.1

Q ss_pred             hhhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         44 INAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        44 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      ......|.|.+. ++.|.+..+.........++..++.++.++++||++||+.+.....+..+.
T Consensus       221 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        221 QLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVL  284 (394)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence            344555667666 567999888888888888899999999999999999999887665544443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.73  E-value=1.2e-07  Score=61.97  Aligned_cols=61  Identities=15%  Similarity=0.105  Sum_probs=46.9

Q ss_pred             hhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         46 AVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        46 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      ....+.|.+. ++.|.++.+.........+...++.++.+++.||+|||+....+.....+.
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  285 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVS  285 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            3344456555 468888888888888888999999999999999999999887665554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.72  E-value=5.3e-08  Score=65.31  Aligned_cols=82  Identities=17%  Similarity=0.144  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      +.+....+.............+..|++.+ .|.+..+..+......++..++.++.|+++||+|||+++..+.+..++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~  105 (438)
T TIGR00712        27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM  105 (438)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH
Confidence            34333333333333333334556677665 59999999999999999999999999999999999998888766666554


Q ss_pred             HHH
Q psy17792        108 IFI  110 (116)
Q Consensus       108 ~~~  110 (116)
                      ...
T Consensus       106 ~~~  108 (438)
T TIGR00712       106 LLM  108 (438)
T ss_pred             HHH
Confidence            443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.71  E-value=8.8e-08  Score=62.39  Aligned_cols=70  Identities=17%  Similarity=0.062  Sum_probs=57.8

Q ss_pred             chhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         43 GINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      .........|.+.+++|.+..+..+......+...++.++.|+++||+|||+++..+.++..+.....+.
T Consensus         9 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   78 (399)
T TIGR00893         9 DRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF   78 (399)
T ss_pred             HHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH
Confidence            3345566778888999999999999999999999999999999999999999998887766665554443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.71  E-value=2.3e-07  Score=61.19  Aligned_cols=91  Identities=20%  Similarity=0.060  Sum_probs=58.1

Q ss_pred             chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792         14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR   93 (116)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr   93 (116)
                      .++++.+|++..+.-.+.    .++.+.. ......+.|.+.++.|.+..+.........+...+..++.+++.||+|+|
T Consensus       196 ~~~~~i~~~~~~~~~~~~----~~l~~~~-~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~  270 (382)
T PRK11128        196 PAWKALLKEPTVWRFLLC----VSLLQGS-HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR  270 (382)
T ss_pred             chHHHHHcChhHHHHHHH----HHHHHHH-hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence            456777777644432221    1222222 12222233445567888887777777777778888889999999999999


Q ss_pred             hHHhhhhHHHHHHHHH
Q psy17792         94 TLHLYGLGGMFIFSIF  109 (116)
Q Consensus        94 ~~~~~~~~~~~~~~~~  109 (116)
                      +.+..+....++....
T Consensus       271 ~~l~~~~~~~~~~~~~  286 (382)
T PRK11128        271 DLLLLSAICGVVRWGL  286 (382)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9988777666654433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.71  E-value=2.2e-07  Score=61.60  Aligned_cols=61  Identities=7%  Similarity=0.089  Sum_probs=50.5

Q ss_pred             HhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792         49 YYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF  109 (116)
Q Consensus        49 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~  109 (116)
                      ...+...+++|.+..+..+......+...+..++.|+++||+|||+++..+..+.++..+.
T Consensus        24 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~   84 (393)
T PRK11195         24 FAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL   84 (393)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence            3445557788888888888888999999999999999999999999999888776655544

>PRK10504 putative transporter; Provisional

Probab=98.70  E-value=4.9e-07  Score=61.08  Aligned_cols=65  Identities=17%  Similarity=0.249  Sum_probs=49.7

Q ss_pred             hhhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         44 INAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        44 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      .....++.|++.+ ..|.++.+..+......+...++.++.+++.||+|||+++..+.++..+...
T Consensus       277 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~  342 (471)
T PRK10504        277 SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSL  342 (471)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence            3445567787777 4788888877777777777888889999999999999998877665554433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.70  E-value=1.9e-07  Score=62.53  Aligned_cols=61  Identities=11%  Similarity=0.037  Sum_probs=44.9

Q ss_pred             HHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         51 STALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        51 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      .+++.+. +|.+ ...........+...++.++.++++||+|+|+.+..+..+.++..+.+.+
T Consensus       248 ~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~  309 (428)
T PF13347_consen  248 LPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF  309 (428)
T ss_pred             HHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence            3444443 3444 34456667788889999999999999999999999888877776665543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.69  E-value=6.8e-07  Score=60.39  Aligned_cols=66  Identities=17%  Similarity=0.161  Sum_probs=51.9

Q ss_pred             hhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         45 NAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        45 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      ....++.|.+.+ ..|.++.+.........++..++.++.+++.||+|||+++..+..+..+....+
T Consensus       272 ~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~  338 (485)
T TIGR00711       272 YGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWR  338 (485)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHH
Confidence            344456676665 478998888888888899999999999999999999999887776665554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=98.68  E-value=3.7e-07  Score=60.30  Aligned_cols=52  Identities=19%  Similarity=0.174  Sum_probs=41.0

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhh
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLY   98 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~   98 (116)
                      ..+..|++.+..|.+..+.........+...++.++.++++||+|||.....
T Consensus       225 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~  276 (390)
T PRK03545        225 YSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA  276 (390)
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            3444555555678888888888888888999999999999999998876543

>PRK10133 L-fucose transporter; Provisional

Probab=98.68  E-value=4.3e-07  Score=61.15  Aligned_cols=59  Identities=12%  Similarity=-0.009  Sum_probs=46.7

Q ss_pred             HHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         48 FYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        48 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      .+..+++.+ ..|.++.+.........++..++.++.+++.||+|||+++..+..+..+.
T Consensus       279 ~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~  338 (438)
T PRK10133        279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL  338 (438)
T ss_pred             HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            344445444 57999999999999999999999999999999999999887765554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.68  E-value=2.5e-07  Score=61.72  Aligned_cols=52  Identities=10%  Similarity=-0.019  Sum_probs=38.6

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         59 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        59 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      +.+..+.+.......+...++.++.|+++||+|||+.+..+..+..+.....
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~  309 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGS  309 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence            4454555666677777888999999999999999998877766655544443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.67  E-value=2.7e-07  Score=60.40  Aligned_cols=50  Identities=22%  Similarity=0.246  Sum_probs=41.9

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792         53 ALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG  102 (116)
Q Consensus        53 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~  102 (116)
                      ++.+..|.++.+.........+...++.++.+++.||+|||+.+..+...
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~  269 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWI  269 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            34455788888888888888899999999999999999999988766544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.67  E-value=5.9e-07  Score=58.18  Aligned_cols=60  Identities=8%  Similarity=-0.086  Sum_probs=47.9

Q ss_pred             HhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         49 YYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        49 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      .+.|++.++ .|.+..+.........++..++.++.+++.||.|||+.+..+....++...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  292 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAIL  292 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence            566777665 788888888888888999999999999999999999988776555544443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.66  E-value=5.9e-07  Score=59.53  Aligned_cols=89  Identities=13%  Similarity=0.032  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792         26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI  105 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~  105 (116)
                      +.+++......+...... ....-.+|.+.+++|.+..+++.....+..+..+++++...+.||+.||++++....++.+
T Consensus        12 ~~~l~aLa~~~F~igttE-fv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~   90 (394)
T COG2814          12 WLALLALALAAFAIGTTE-FVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV   90 (394)
T ss_pred             hHHHHHHHHHHHHHHhHH-HHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence            444444333334333333 3456677999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHc
Q psy17792        106 FSIFITISLL  115 (116)
Q Consensus       106 ~~~~~~~~~~  115 (116)
                      +-++.+++.+
T Consensus        91 ~n~l~alAp~  100 (394)
T COG2814          91 SNLLSALAPS  100 (394)
T ss_pred             HHHHHHHhcc
Confidence            8888777655

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.65  E-value=5.6e-07  Score=59.87  Aligned_cols=76  Identities=9%  Similarity=-0.011  Sum_probs=57.0

Q ss_pred             HHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         36 QLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      .++.....+....+..+++.++.|.+..+.+.......+......++.|+++||+|||+++..+.....+..+...
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~   94 (400)
T PRK11646         19 NMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA   94 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            3333333333344455556678899998888888888888888899999999999999999988877776665554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.65  E-value=4.2e-07  Score=59.99  Aligned_cols=60  Identities=20%  Similarity=0.108  Sum_probs=46.0

Q ss_pred             hHHHH-HhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792         50 YSTAL-FESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF  109 (116)
Q Consensus        50 ~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~  109 (116)
                      +.|++ .++.|.+..+.........+...++.++.+++.||+|||+....+.....+....
T Consensus       225 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~  285 (392)
T PRK10473        225 TSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGIT  285 (392)
T ss_pred             hCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            34444 4567888877777778888899999999999999999999888776655544433

>PRK11043 putative transporter; Provisional

Probab=98.65  E-value=3.6e-07  Score=60.47  Aligned_cols=82  Identities=16%  Similarity=0.116  Sum_probs=52.7

Q ss_pred             chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792         14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR   93 (116)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr   93 (116)
                      .++++.+++++++...+..    .... ........+.|.+.++.|.+..+.........+...++.+..+++.||+|+|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~  268 (401)
T PRK11043        194 LTFKQLLKSKTYLGNVLIF----AACS-AAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGE  268 (401)
T ss_pred             HHHHHHHcChhHHHHHHHH----HHHH-HHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            3566777766544322211    1111 1122333456777778888887777766667778888999999999999999


Q ss_pred             hHHhhhh
Q psy17792         94 TLHLYGL  100 (116)
Q Consensus        94 ~~~~~~~  100 (116)
                      +....+.
T Consensus       269 ~~~~~~~  275 (401)
T PRK11043        269 QLLPWLL  275 (401)
T ss_pred             HHHHHHH
Confidence            8664443

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.64  E-value=5e-07  Score=61.69  Aligned_cols=56  Identities=11%  Similarity=-0.088  Sum_probs=42.8

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHH-HHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTT-IGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG  102 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~  102 (116)
                      ..+..|++.++.|.+..+..... ....++..++.+++|+++||+|||+.+..+.+.
T Consensus       242 ~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l  298 (491)
T PRK11010        242 MSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGIL  298 (491)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34455666677899998887776 455678999999999999999998877654443

>PRK09952 shikimate transporter; Provisional

Probab=98.63  E-value=6.3e-07  Score=60.26  Aligned_cols=85  Identities=12%  Similarity=0.011  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHhhchhhhHHhHHHHHh-hc--CCCcchhHHHH----HHHHHHHHHHHHHHHHhhhcccchhHHhhhhH
Q psy17792         29 LIIGIVMQLSQQFSGINAVFYYSTALFE-SS--GLSEKTAKFTT----IGIGAVMVTMTIISIPLMDRMGRRTLHLYGLG  101 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--g~~~~~~~~~~----~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~  101 (116)
                      .+.......+..........+..|.+.. +.  +.++.......    ....++..+++++.|+++||+|||+++..+..
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~  102 (438)
T PRK09952         23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVW  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHH
Confidence            4444544555555555556666665443 33  45554322211    23445677888999999999999999999888


Q ss_pred             HHHHHHHHHHHH
Q psy17792        102 GMFIFSIFITIS  113 (116)
Q Consensus       102 ~~~~~~~~~~~~  113 (116)
                      +.+++....+++
T Consensus       103 ~~~~~~~~~~~~  114 (438)
T PRK09952        103 MMGIATALIGLL  114 (438)
T ss_pred             HHHHHHHHHhcC
Confidence            887776665543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.63  E-value=2.1e-07  Score=61.41  Aligned_cols=59  Identities=20%  Similarity=0.137  Sum_probs=49.8

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM  103 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~  103 (116)
                      ....+..|.+.+++|.+..+.++......++..++.++.|+++||+|||+++..+....
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~   66 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATF   66 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            44566788899999999999999999999999999999999999999998776554433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00896 CynX cyanate transporter

Probab=98.63  E-value=7.7e-08  Score=62.70  Aligned_cols=70  Identities=14%  Similarity=-0.032  Sum_probs=57.9

Q ss_pred             HHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         38 SQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      ++...++.......|.+.+++|.+..+..+......++..++.++.|+++||+|||+.+..+.....+..
T Consensus        10 ~~~~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   79 (355)
T TIGR00896        10 LNLRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGI   79 (355)
T ss_pred             hcccCccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            4444455555667889999999999999999999999999999999999999999999888776554433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.62  E-value=7.6e-07  Score=58.14  Aligned_cols=56  Identities=18%  Similarity=0.242  Sum_probs=41.1

Q ss_pred             hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792         50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI  105 (116)
Q Consensus        50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~  105 (116)
                      +.+++.++.|.++.+.............++.++.+++.||+|||+.+..+.....+
T Consensus       222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~  277 (375)
T TIGR00899       222 MPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVA  277 (375)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHH
Confidence            33344467888887777666666667778888999999999999988766554433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.62  E-value=5.9e-07  Score=58.54  Aligned_cols=50  Identities=24%  Similarity=0.176  Sum_probs=40.0

Q ss_pred             hhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792         45 NAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT   94 (116)
Q Consensus        45 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~   94 (116)
                      .....+.|.+. +..|.+..+.........+...++.++.++++||+|||+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       232 GFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34444555554 567888888888888888999999999999999999996

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.62  E-value=5.9e-07  Score=59.63  Aligned_cols=56  Identities=18%  Similarity=0.101  Sum_probs=40.9

Q ss_pred             HhHHHHHhhcCCCcchhHHHHHHHH-HHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792         49 YYSTALFESSGLSEKTAKFTTIGIG-AVMVTMTIISIPLMDRMGRRTLHLYGLGGMF  104 (116)
Q Consensus        49 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~  104 (116)
                      +..|++.++.|.+..+......... +...++.++.+++.||+|||+.+..+.....
T Consensus       231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~  287 (402)
T PRK11902        231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQA  287 (402)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3445666778988877776655444 4578899999999999999988765554433

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.61  E-value=6.2e-07  Score=60.17  Aligned_cols=46  Identities=13%  Similarity=0.010  Sum_probs=37.6

Q ss_pred             hhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17792         45 NAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM   90 (116)
Q Consensus        45 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~   90 (116)
                      .....+.|.++ ++.|.+..+.........+++.++.++.|+++||+
T Consensus       260 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        260 AAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            34445666666 56799988888888888899999999999999999

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.61  E-value=5.8e-07  Score=59.28  Aligned_cols=60  Identities=20%  Similarity=0.134  Sum_probs=47.8

Q ss_pred             HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      .+..|++.+..|.++.+.........++..++.++.+++.||+|+|+....+..+..+..
T Consensus       220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHH
Confidence            344566666689988888888888999999999999999999999998877665544443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.59  E-value=6.3e-07  Score=61.00  Aligned_cols=82  Identities=17%  Similarity=0.084  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhh----cccchhHHhhh-hHH
Q psy17792         28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD----RMGRRTLHLYG-LGG  102 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~grr~~~~~~-~~~  102 (116)
                      +++.........|++. .....+.+.+++++|.+............+.+.+..++.|+++|    |+|||++++.+ ...
T Consensus         5 ~li~~~~~~~Giq~~~-~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~   83 (477)
T TIGR01301         5 KLLRVASVAAGVQFGW-ALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence            3555455555556554 44444555577889999988889999999999999999999999    59999988764 444


Q ss_pred             HHHHHHHH
Q psy17792        103 MFIFSIFI  110 (116)
Q Consensus       103 ~~~~~~~~  110 (116)
                      ..++...+
T Consensus        84 ~~~~l~ll   91 (477)
T TIGR01301        84 VAFAVILI   91 (477)
T ss_pred             HHHHHHHH
Confidence            44444443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.59  E-value=8e-07  Score=59.34  Aligned_cols=63  Identities=13%  Similarity=0.035  Sum_probs=47.5

Q ss_pred             HHHHHHHHhhchhhhHHhHHHHHhhc--CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q psy17792         33 IVMQLSQQFSGINAVFYYSTALFESS--GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTL   95 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~   95 (116)
                      ....++.....+.....|.|.++++.  |.+..+.........+...++.++.++++||++||+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~  311 (412)
T TIGR02332       247 YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH  311 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence            33344444455566677888888875  5566677778888899999999999999999997774

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.59  E-value=7.6e-07  Score=60.20  Aligned_cols=88  Identities=24%  Similarity=0.202  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcC----CCcchhHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHhhhh
Q psy17792         26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSG----LSEKTAKFTTIGIGAVMVTMTIISIPLMDRM-GRRTLHLYGL  100 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-grr~~~~~~~  100 (116)
                      +|++...+..-+...+++|+.-....-|+..+.+    ++.+++......+...--...+++||++||+ |+|+.++.|.
T Consensus        20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa   99 (498)
T COG3104          20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA   99 (498)
T ss_pred             CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            4456677788888899998887777777777766    8888887777777777778888999999995 9999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17792        101 GGMFIFSIFITIS  113 (116)
Q Consensus       101 ~~~~~~~~~~~~~  113 (116)
                      ++..+..++++..
T Consensus       100 il~~iGh~~L~~~  112 (498)
T COG3104         100 ILMAIGHLVLAIS  112 (498)
T ss_pred             HHHHHHHHHHhcc
Confidence            9888887776653

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.59  E-value=7.9e-07  Score=60.46  Aligned_cols=44  Identities=23%  Similarity=0.196  Sum_probs=36.9

Q ss_pred             hHHH-HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792         50 YSTA-LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR   93 (116)
Q Consensus        50 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr   93 (116)
                      +.|. +.++.|.+..++........++..++.+++|+++||++||
T Consensus       274 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            4444 4456799988888888889999999999999999999876

>PTZ00207 hypothetical protein; Provisional

Probab=98.58  E-value=1.1e-06  Score=61.17  Aligned_cols=68  Identities=15%  Similarity=0.106  Sum_probs=52.1

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~  113 (116)
                      +....+.|.+.+++|.+..+........... ....+++|++.||+|||+++..+.+...+..+..+++
T Consensus        44 y~fsv~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala  111 (591)
T PTZ00207         44 YAFNLISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALT  111 (591)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3556778888899999988877666553333 3456678999999999999999988888877766654

>TIGR00898 2A0119 cation transport protein

Probab=98.58  E-value=1.2e-06  Score=59.65  Aligned_cols=89  Identities=18%  Similarity=0.162  Sum_probs=53.2

Q ss_pred             chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792         14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR   93 (116)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr   93 (116)
                      .+++++++++..++..+.....++. ....++    ..+...++.+.+   .........+..+++.++.++++||+|||
T Consensus       314 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr  385 (505)
T TIGR00898       314 YSFLDLFRTPNLRKTTLCLMMLWFT-TAFSYY----GLVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRR  385 (505)
T ss_pred             CcHHHHhCChHHHHHHHHHHHHHHH-HHHHHH----HHhccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            3567888877666544433332222 111111    122223333433   23444556777888999999999999999


Q ss_pred             hHHhhhhHHHHHHHHHH
Q psy17792         94 TLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        94 ~~~~~~~~~~~~~~~~~  110 (116)
                      +.+..+.++.+++.+.+
T Consensus       386 ~~~~~~~~~~~~~~l~~  402 (505)
T TIGR00898       386 YTMAASLLLAGVALLLL  402 (505)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99888777666655444

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.57  E-value=1e-06  Score=58.38  Aligned_cols=56  Identities=16%  Similarity=0.119  Sum_probs=41.4

Q ss_pred             hHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792         47 VFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG  102 (116)
Q Consensus        47 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~  102 (116)
                      ...+.|.++ ++.|.+..+.........+..+++.++.|+++||+|||+.+..+...
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~  291 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVA  291 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            334455544 56788887777666666677788899999999999999977665443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.57  E-value=7e-07  Score=59.00  Aligned_cols=84  Identities=13%  Similarity=0.041  Sum_probs=51.8

Q ss_pred             hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHH-HHHHHHHHHHHHhhhcccch
Q psy17792         15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIG-AVMVTMTIISIPLMDRMGRR   93 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~l~dr~grr   93 (116)
                      ++++.+|++..+.... ..   ++.+........+ .+.+.++.|.+.++......... ....++.++.|++.||+|+|
T Consensus       200 ~~~~~l~~~~~~~~~~-~~---~l~~~~~~~~~~~-~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~  274 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLA-LA---LLSAMTAVSGFGL-SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW  274 (390)
T ss_pred             HHHHHHcCcCHHHHHH-HH---HHHHHHHHHHHHH-hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4567777665433222 12   2222222222333 34455668999888777766655 45677788999999999999


Q ss_pred             hHHhhhhHHH
Q psy17792         94 TLHLYGLGGM  103 (116)
Q Consensus        94 ~~~~~~~~~~  103 (116)
                      +.+..+....
T Consensus       275 ~~l~~~~~~~  284 (390)
T TIGR02718       275 RTFILGVGLA  284 (390)
T ss_pred             HHHHHHHHHH
Confidence            9887665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.56  E-value=4e-07  Score=59.63  Aligned_cols=66  Identities=14%  Similarity=0.115  Sum_probs=55.6

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      .....|.+.+++|.+..+..+......++..++.++.|+++||+|||+++..+..+..+.......
T Consensus        10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~   75 (377)
T PRK11102         10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL   75 (377)
T ss_pred             HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH
Confidence            345667888899999999999999999999999999999999999999998888777666555443

>KOG0253|consensus

Probab=98.56  E-value=1.1e-06  Score=58.12  Aligned_cols=96  Identities=23%  Similarity=0.252  Sum_probs=61.4

Q ss_pred             hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcC--------------------CCcchhHHHHHHHHH
Q psy17792         15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSG--------------------LSEKTAKFTTIGIGA   74 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------~~~~~~~~~~~~~~~   74 (116)
                      ...+++ .|.+||..++...+++...+++|+. ........+.-+                    .+...-..-..+..+
T Consensus       315 ~~~nLl-sp~lrkttlllw~iwfgnafsyyg~-VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitsl  392 (528)
T KOG0253|consen  315 GTTNLL-SPKLRKTTLLLWRIWFGNAFSYYGS-VLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSL  392 (528)
T ss_pred             chHhhc-ChHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHH
Confidence            345555 4566777776666655555555443 323333332211                    111122334566778


Q ss_pred             HHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         75 VMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        75 ~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ..++|.++.+++.||+|||+.+....+.+.++.+....
T Consensus       393 aefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~  430 (528)
T KOG0253|consen  393 AEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTT  430 (528)
T ss_pred             hhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999998888887766543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.55  E-value=9.7e-07  Score=58.43  Aligned_cols=51  Identities=12%  Similarity=0.025  Sum_probs=36.7

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792         59 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF  109 (116)
Q Consensus        59 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~  109 (116)
                      +.+....+.......+...++.+..+++.||+|||+.+..+..+.++....
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~  300 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIG  300 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            334444455666667778888899999999999999888777665554433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.54  E-value=1.4e-06  Score=58.81  Aligned_cols=50  Identities=10%  Similarity=0.160  Sum_probs=38.1

Q ss_pred             hhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc--cchh
Q psy17792         45 NAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM--GRRT   94 (116)
Q Consensus        45 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~   94 (116)
                      +....|.|.++++ .|.+..+.........++..++.++.|+++||+  +||+
T Consensus       270 ~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~  322 (452)
T PRK11273        270 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  322 (452)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            3344566666654 688877777777788888899999999999999  5554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.54  E-value=3e-06  Score=57.93  Aligned_cols=63  Identities=16%  Similarity=0.045  Sum_probs=49.9

Q ss_pred             hhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         46 AVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        46 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      ...++.|..++ ..|.++.+.+.......+...++.++.|++.||+|||+.+..+.....+...
T Consensus       277 ~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~  340 (495)
T PRK14995        277 GFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFY  340 (495)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence            34455565555 4799999999999989999999999999999999999988777666554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.54  E-value=3e-07  Score=61.37  Aligned_cols=47  Identities=13%  Similarity=0.064  Sum_probs=35.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         62 EKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      ............+..+++.++.++++||+|||+.+..+..+..+..+
T Consensus       256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~  302 (437)
T TIGR00792       256 PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYL  302 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            33444555666888899999999999999999988877665554433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.54  E-value=1.4e-06  Score=56.31  Aligned_cols=62  Identities=13%  Similarity=0.059  Sum_probs=47.9

Q ss_pred             hhHHhHHHHHhh---cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         46 AVFYYSTALFES---SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        46 ~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      ....|.+.++++   .|.++.+.............+|.++.+++.||+|+|+++..+..+..+..
T Consensus       158 ~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~  222 (310)
T TIGR01272       158 SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLS  222 (310)
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            334445555543   58888888888999999999999999999999999998877665555443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.52  E-value=1.3e-06  Score=57.13  Aligned_cols=62  Identities=13%  Similarity=-0.040  Sum_probs=45.9

Q ss_pred             hhhHHhHH-HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhh-hhHHHHHH
Q psy17792         45 NAVFYYST-ALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLY-GLGGMFIF  106 (116)
Q Consensus        45 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~-~~~~~~~~  106 (116)
                      .......| ++.+++|.+..+.++......+...+..++.|+++||+|||+.++. +.....+.
T Consensus        14 ~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~   77 (375)
T TIGR00899        14 ALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALA   77 (375)
T ss_pred             HHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            33334444 4556789999898888888888899999999999999999886554 44433333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.51  E-value=2.4e-06  Score=57.99  Aligned_cols=59  Identities=14%  Similarity=-0.017  Sum_probs=48.0

Q ss_pred             hHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792         47 VFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI  105 (116)
Q Consensus        47 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~  105 (116)
                      ...+.|.++ ++.|.+..+.........++..++.++.|+++||+|||+++..+..+..+
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~  353 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQL  353 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            445566666 47899998888888889999999999999999999999988766554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.51  E-value=1.8e-06  Score=57.29  Aligned_cols=59  Identities=17%  Similarity=0.134  Sum_probs=43.4

Q ss_pred             hHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         50 YSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        50 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      +.|.++ ++.|.++.+.........++..++.++.++++||++||+.+..+.+...+...
T Consensus       237 ~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~  296 (406)
T PRK15402        237 LSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLL  296 (406)
T ss_pred             HhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            345544 56788887776666666777888999999999999999988776655444333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.50  E-value=1.1e-06  Score=61.18  Aligned_cols=64  Identities=16%  Similarity=0.018  Sum_probs=51.5

Q ss_pred             HhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792         49 YYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        49 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~  113 (116)
                      .-.+++..+.|-++ +..|......+...+..++.|.++|.+|||..++.+.++..+..++.+.+
T Consensus        65 ~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA  128 (599)
T PF06609_consen   65 SILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA  128 (599)
T ss_pred             HHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence            34567777887754 55577777888899999999999999999999999988888877766544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.49  E-value=2.9e-07  Score=64.60  Aligned_cols=88  Identities=13%  Similarity=-0.025  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792         26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI  105 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~  105 (116)
                      ++..++...+..+.+.........-.|.+.++++++..+.+++.....++..++.++.+++.||.|||+++..+.++.++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l  110 (633)
T TIGR00805        31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL  110 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence            33333434434454544444556667888889999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q psy17792        106 FSIFITIS  113 (116)
Q Consensus       106 ~~~~~~~~  113 (116)
                      ..+++++.
T Consensus       111 g~ll~alp  118 (633)
T TIGR00805       111 GSFLLSLP  118 (633)
T ss_pred             HHHHHhCh
Confidence            88877654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.48  E-value=8.6e-07  Score=58.96  Aligned_cols=68  Identities=22%  Similarity=0.169  Sum_probs=61.7

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISL  114 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  114 (116)
                      ...-.|.+.++.+++..+.+.......+...++-++.|.++||.+.|..+..|+++.+++.+.++++.
T Consensus        48 F~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~  115 (448)
T COG2271          48 FNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP  115 (448)
T ss_pred             HhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh
Confidence            45677889999999999999999999999999999999999999999999999999999888887653

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.48  E-value=1.7e-06  Score=58.09  Aligned_cols=50  Identities=8%  Similarity=0.072  Sum_probs=39.3

Q ss_pred             hhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792         45 NAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT   94 (116)
Q Consensus        45 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~   94 (116)
                      +....|.|.++++ .|.+..+..+......+...++.++.++++||+++++
T Consensus       268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  318 (438)
T TIGR00712       268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN  318 (438)
T ss_pred             HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            3445566766664 6888888888888888899999999999999996543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG2615|consensus

Probab=98.47  E-value=8.2e-07  Score=58.54  Aligned_cols=52  Identities=21%  Similarity=0.165  Sum_probs=46.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHHc
Q psy17792         64 TAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLL  115 (116)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~  115 (116)
                      -.+..+..+.+.+++.++..|.++||+|||+++..++++.++....++.+-+
T Consensus        69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~  120 (451)
T KOG2615|consen   69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN  120 (451)
T ss_pred             hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888899999999999999999999999999999999998888877654

>TIGR00889 2A0110 nucleoside transporter

Probab=98.47  E-value=4.3e-06  Score=56.06  Aligned_cols=61  Identities=8%  Similarity=0.007  Sum_probs=48.4

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc-hhHHhhhhHHHHHHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR-RTLHLYGLGGMFIFS  107 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr-r~~~~~~~~~~~~~~  107 (116)
                      ..+..+++.++.|.+..+.++......++..++.++.|.++||+|| |+++..+.+...+..
T Consensus        22 ~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~   83 (418)
T TIGR00889        22 LVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLL   83 (418)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            3555666667789999999999999999999999999999999965 666666555544433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.47  E-value=3.5e-06  Score=57.60  Aligned_cols=51  Identities=14%  Similarity=0.042  Sum_probs=40.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         62 EKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ..+..+......++..++.++.++++||+|||+.+..+.++..+.....+.
T Consensus        55 ~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~  105 (502)
T TIGR00887        55 SSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGL  105 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            344567788888999999999999999999999998877766665554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00889 2A0110 nucleoside transporter

Probab=98.46  E-value=2.3e-06  Score=57.35  Aligned_cols=61  Identities=13%  Similarity=0.109  Sum_probs=42.9

Q ss_pred             hHHHHHhhcCCCc--------chhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         50 YSTALFESSGLSE--------KTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        50 ~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      +.|...++.|.+.        ...........+...++.++.++++||+|||+++..+.+...+.....
T Consensus       230 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~  298 (418)
T TIGR00889       230 FGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFF  298 (418)
T ss_pred             hHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            3344455555443        344566666777888889999999999999999988877766654333

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.43  E-value=1e-06  Score=59.77  Aligned_cols=55  Identities=15%  Similarity=0.004  Sum_probs=37.2

Q ss_pred             hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792         50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF  104 (116)
Q Consensus        50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~  104 (116)
                      +.+++.+....+............+..+++.++.++++||+|||+.+..+..+..
T Consensus       253 ~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~  307 (473)
T PRK10429        253 FAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPV  307 (473)
T ss_pred             heeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            4445554433333344455555667888899999999999999999876665444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.42  E-value=5.7e-06  Score=53.20  Aligned_cols=71  Identities=24%  Similarity=0.245  Sum_probs=54.7

Q ss_pred             hhchhhhHHhHHHHHhhc-CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh-HHhhhhHHHHHHHHHHH
Q psy17792         41 FSGINAVFYYSTALFESS-GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT-LHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~-~~~~~~~~~~~~~~~~~  111 (116)
                      .........+.|.+.++. |.+..+.........++..++.++.+++.||+|||+ .+..+.....+......
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  260 (352)
T cd06174         188 SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA  260 (352)
T ss_pred             HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            333445555666666654 888888888899999999999999999999999999 88777776666555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00898 2A0119 cation transport protein

Probab=98.41  E-value=3.1e-07  Score=62.53  Aligned_cols=63  Identities=14%  Similarity=0.126  Sum_probs=52.8

Q ss_pred             hHHHHHhhcCCC---cchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         50 YSTALFESSGLS---EKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        50 ~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      +.|.+.++.+.+   ..+..+......++..++.++.|+++||+|||+++..+.++..++.+..++
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~  176 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF  176 (505)
T ss_pred             ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            456777788888   677788899999999999999999999999999999888777766655544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.40  E-value=2.1e-06  Score=55.44  Aligned_cols=62  Identities=21%  Similarity=0.219  Sum_probs=46.2

Q ss_pred             hhhHHhHHHH-HhhcCCC-cchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         45 NAVFYYSTAL-FESSGLS-EKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        45 ~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      .....+.|.+ .+..|.+ ..+.........+...++.++.++++||+|+|+..........+.
T Consensus       223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  223 SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILG  286 (352)
T ss_dssp             HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            3355566765 6678888 567777788888889999999999999999887766555444433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.36  E-value=1.7e-05  Score=54.12  Aligned_cols=86  Identities=9%  Similarity=0.077  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcch-hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792         26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKT-AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF  104 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~  104 (116)
                      ++..++.+...++.++=.  ...+..|++.++.|++..+ .+...........+..+++|+++||+|-|+++..+.+...
T Consensus        26 ~~~~~~lC~fGF~~e~R~--n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Ws  103 (511)
T TIGR00806        26 RVLVLYLCFYGFMAQFRP--GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFV  103 (511)
T ss_pred             hHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            444444455555555543  3455678888999999998 8888888999999999999999999999999998888777


Q ss_pred             HHHHHHHHH
Q psy17792        105 IFSIFITIS  113 (116)
Q Consensus       105 ~~~~~~~~~  113 (116)
                      +...+.++.
T Consensus       104 l~t~L~~fa  112 (511)
T TIGR00806       104 CVWLLLLLG  112 (511)
T ss_pred             HHHHHHHHH
Confidence            776666554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.36  E-value=4e-06  Score=54.54  Aligned_cols=45  Identities=16%  Similarity=0.153  Sum_probs=35.5

Q ss_pred             hHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792         47 VFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG   91 (116)
Q Consensus        47 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g   91 (116)
                      ...+.|.+. +..|.+..+.........+...++.++.+++.||.+
T Consensus       235 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~  280 (379)
T TIGR00881       235 ILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF  280 (379)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence            334445444 567888888888888889999999999999999864

>KOG2533|consensus

Probab=98.36  E-value=3.8e-06  Score=57.51  Aligned_cols=85  Identities=19%  Similarity=0.082  Sum_probs=61.0

Q ss_pred             hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc----
Q psy17792         15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR----   89 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr----   89 (116)
                      .+++.++.+..|.     ..+..++.....+...+|.|.++++ .|.+..++..++....++++++.+++|+++||    
T Consensus       265 ~~~~a~~dp~vw~-----~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~  339 (495)
T KOG2533|consen  265 GFKEALKDPGVWP-----FSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTI  339 (495)
T ss_pred             HHHHHHhchhHHH-----HHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhh
Confidence            3456666653332     3333444444556788899999988 56889999999999999999999999999999    


Q ss_pred             ccchhHHhhhhHHHH
Q psy17792         90 MGRRTLHLYGLGGMF  104 (116)
Q Consensus        90 ~grr~~~~~~~~~~~  104 (116)
                      ..+|..+.....+..
T Consensus       340 ~~~~~~~~~~~~~~~  354 (495)
T KOG2533|consen  340 FARRLLFIVFLCLYA  354 (495)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            566665555444333

>KOG2532|consensus

Probab=98.35  E-value=3.5e-06  Score=57.34  Aligned_cols=75  Identities=15%  Similarity=0.164  Sum_probs=56.7

Q ss_pred             cchhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792         13 KISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG   91 (116)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g   91 (116)
                      +.+++++++++..|     ++++..+....+......|.|.+++ -+|++..+.++.+++..+.+.+..+++|.++||.-
T Consensus       248 ~vP~~~i~ts~~vw-----ai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~  322 (466)
T KOG2532|consen  248 PVPYKAILTSPPVW-----AIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLT  322 (466)
T ss_pred             CCCHHHHHcCHHHH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45788888776433     3333444444455566666676666 58999999999999999999999999999999986


Q ss_pred             c
Q psy17792         92 R   92 (116)
Q Consensus        92 r   92 (116)
                      +
T Consensus       323 ~  323 (466)
T KOG2532|consen  323 F  323 (466)
T ss_pred             h
Confidence            6

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.34  E-value=9.4e-06  Score=53.72  Aligned_cols=40  Identities=15%  Similarity=0.023  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         68 TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      ......+...++.+..++++||+|||+.+..+.....+..
T Consensus       263 ~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~  302 (408)
T PRK09874        263 IASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLL  302 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence            3344566777888889999999999998887766554443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.33  E-value=1.1e-05  Score=54.59  Aligned_cols=74  Identities=12%  Similarity=-0.006  Sum_probs=50.5

Q ss_pred             hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792         15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR   93 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr   93 (116)
                      +++++++++..     +......+....+.+....|.|.+++ ..|.+..+.........++..++.++.|+++||+++|
T Consensus       253 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~  327 (465)
T TIGR00894       253 PIKAIPKSLPV-----WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS  327 (465)
T ss_pred             CHHHHhcCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            35555544322     22333334444444555566676664 5789888888888888999999999999999998755

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.33  E-value=1e-05  Score=55.85  Aligned_cols=89  Identities=13%  Similarity=0.146  Sum_probs=57.8

Q ss_pred             hhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh
Q psy17792         18 ELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL   97 (116)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~   97 (116)
                      +-+|++.+++ ++.+-.+..+..+......    +.+..+.+-++...........+..++.++++|.++||++||++++
T Consensus         5 aplr~~~Fr~-lw~a~~iS~lG~~~~~va~----~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili   79 (524)
T PF05977_consen    5 APLRNRNFRR-LWIAQLISNLGDWMQTVAL----AWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI   79 (524)
T ss_pred             ccccCchHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence            3467766664 3333344444333333333    3334455566667777777888888999999999999999999999


Q ss_pred             hhhHHHHHHHHHHH
Q psy17792         98 YGLGGMFIFSIFIT  111 (116)
Q Consensus        98 ~~~~~~~~~~~~~~  111 (116)
                      .+-+...+....++
T Consensus        80 ~~~~~~~~~~~~L~   93 (524)
T PF05977_consen   80 LSQLLRALVALLLA   93 (524)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87766655444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.33  E-value=1.2e-05  Score=53.26  Aligned_cols=54  Identities=13%  Similarity=0.039  Sum_probs=35.0

Q ss_pred             HHhHHHHHhhcCCCcchhHHHHHHHHHHHHH-HHHHHHHhhhcccchhHHh-hhhHH
Q psy17792         48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVT-MTIISIPLMDRMGRRTLHL-YGLGG  102 (116)
Q Consensus        48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~l~dr~grr~~~~-~~~~~  102 (116)
                      ....+++.+++|.+..+.+.......+...+ +.+.+++ .||+|||+.++ .+.+.
T Consensus        36 p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~   91 (393)
T PRK15011         36 PTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLL   91 (393)
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHH
Confidence            3344455678899998887776555554444 4444555 99999998754 44443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.32  E-value=6.3e-06  Score=54.96  Aligned_cols=60  Identities=13%  Similarity=-0.026  Sum_probs=44.9

Q ss_pred             HHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         48 FYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        48 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      ..+.|.+.++ .|.+.....+......++..++.++.+++.||.++++.+..+..+..+..
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~  303 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAV  303 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHH
Confidence            3345656665 88888888888888888999999999999999887777666555444433

>KOG0252|consensus

Probab=98.29  E-value=5.1e-06  Score=56.11  Aligned_cols=53  Identities=15%  Similarity=0.019  Sum_probs=44.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         60 LSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      +++........+..++.+.|.+++||+.||+|||+++....+++.++.++.+.
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~  133 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGL  133 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhcc
Confidence            55556677888889999999999999999999999999888888887765544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.29  E-value=1.7e-05  Score=52.77  Aligned_cols=50  Identities=14%  Similarity=0.191  Sum_probs=39.0

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLH   96 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~   96 (116)
                      ..+..|.+.++.|.+..+.........++..++.++.+++.||.+|+...
T Consensus       236 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~  285 (394)
T PRK10213        236 FTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALA  285 (394)
T ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence            34456777788899888877777888889999999999999996544333

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.28  E-value=2.1e-05  Score=41.31  Aligned_cols=66  Identities=14%  Similarity=0.027  Sum_probs=58.5

Q ss_pred             HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792         48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~  113 (116)
                      ....|.+.++.+++..+..+......++.++|++...++.++.++++.+..+.+...+....+++.
T Consensus        12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            346799999999999999999999999999999999999999888888888888888887777654

Note that many members are hypothetical proteins.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.28  E-value=2.1e-05  Score=52.38  Aligned_cols=81  Identities=15%  Similarity=0.050  Sum_probs=63.8

Q ss_pred             HHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         33 IVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ....+...++.........+.+-+++|+++.|..++.+...+.+.+.-++-|.+.||+|-|++...+.++..+-++..++
T Consensus        19 S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~   98 (417)
T COG2223          19 STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAF   98 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHH
Confidence            33344444444455555666677889999999999999999999999999999999999999999988887776666555


Q ss_pred             H
Q psy17792        113 S  113 (116)
Q Consensus       113 ~  113 (116)
                      +
T Consensus        99 a   99 (417)
T COG2223          99 A   99 (417)
T ss_pred             H
Confidence            4

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.27  E-value=1.4e-05  Score=59.30  Aligned_cols=56  Identities=9%  Similarity=-0.088  Sum_probs=39.6

Q ss_pred             hHHHHHhhcCCCcch--hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792         50 YSTALFESSGLSEKT--AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI  105 (116)
Q Consensus        50 ~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~  105 (116)
                      ..+.+....+.+...  ..+...+..+...++.+++|+++||+|||++++.+.++..+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~   89 (1146)
T PRK08633         32 IQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVG   89 (1146)
T ss_pred             HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHH
Confidence            344454555554332  45666677888899999999999999999998877654333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.26  E-value=2e-05  Score=53.88  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=52.1

Q ss_pred             HHHHHHHHhhchhhhHHhHH-HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch--hHHhhhhHHH
Q psy17792         33 IVMQLSQQFSGINAVFYYST-ALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR--TLHLYGLGGM  103 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr--~~~~~~~~~~  103 (116)
                      .++.++....+.+.+..... +..+.+|++..+.........+.+++|+++++++.||+|.|  +++..+....
T Consensus       286 fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  286 FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            34444433344444444444 44457999999999999999999999999999999999999  7776665544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.26  E-value=1.8e-05  Score=53.03  Aligned_cols=44  Identities=9%  Similarity=-0.029  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792         66 KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF  109 (116)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~  109 (116)
                      ............+|.++++++.||+++|+++....++..+..+.
T Consensus       272 ~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll  315 (410)
T TIGR00885       272 ANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLG  315 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            33444555778899999999999999999887766655554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.23  E-value=1.3e-05  Score=59.56  Aligned_cols=63  Identities=13%  Similarity=0.058  Sum_probs=47.6

Q ss_pred             hHHhHHHHHhhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792         47 VFYYSTALFESSGLSEK-TAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF  109 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~  109 (116)
                      ..++.+++.+..|.+.. ...+......++.+++.++.++++||+++++.+..+.++.+++.+.
T Consensus       252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~  315 (1146)
T PRK08633        252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFL  315 (1146)
T ss_pred             HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHH
Confidence            34444455566888887 7788888888999999999999999999998877666555444433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.22  E-value=1.2e-05  Score=52.68  Aligned_cols=60  Identities=25%  Similarity=0.168  Sum_probs=49.6

Q ss_pred             hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792         50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF  109 (116)
Q Consensus        50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~  109 (116)
                      |.-.++++.|++..+.........+...+...+.|.++||+|||+..+..++...++++.
T Consensus        56 Y~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~  115 (354)
T PF05631_consen   56 YLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT  115 (354)
T ss_pred             hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            333455778999999888888888888999999999999999999999888877776653

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.22  E-value=6.4e-06  Score=55.81  Aligned_cols=53  Identities=23%  Similarity=0.265  Sum_probs=41.2

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         58 SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        58 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      +|.++..............+++.++.+.+++|+|+|+++.++.++..+..+.+
T Consensus       267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~  319 (467)
T COG2211         267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLL  319 (467)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            46666566566666777777789999999999999999999887776665544

>KOG0254|consensus

Probab=98.21  E-value=1.1e-05  Score=55.49  Aligned_cols=49  Identities=20%  Similarity=0.216  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHH
Q psy17792         66 KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISL  114 (116)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  114 (116)
                      .+......++..+++++.|+++|++|||+.++.+.+...+..++.+.+.
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~  140 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP  140 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            6889999999999999999999999999999999998888888877764

>PRK09669 putative symporter YagG; Provisional

Probab=98.19  E-value=7e-06  Score=55.30  Aligned_cols=38  Identities=8%  Similarity=0.040  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792         67 FTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF  104 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~  104 (116)
                      .......+..+++.++.++++||+|||+.+..+.....
T Consensus       268 ~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~  305 (444)
T PRK09669        268 LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFV  305 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            33444556677888899999999999998877665443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.19  E-value=7.4e-06  Score=55.40  Aligned_cols=54  Identities=13%  Similarity=-0.142  Sum_probs=44.2

Q ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         57 SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        57 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      +++.+..+.+.......++..++.++.|+++||+|||+++..+.+...+.....
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~  123 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVI  123 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence            456777777888888899999999999999999999999988777665554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.19  E-value=2.3e-05  Score=52.40  Aligned_cols=72  Identities=21%  Similarity=0.221  Sum_probs=54.7

Q ss_pred             HHHHHhhchhhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         36 QLSQQFSGINAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      ..+...-|.+++..+...+-. .+|.+..+........++++.+|+++.|++.||+|-|+++..+..+....+
T Consensus       260 A~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~  332 (438)
T COG2270         260 ARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA  332 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence            333333444555444444444 799999999999999999999999999999999999998888776555443

>PRK09848 glucuronide transporter; Provisional

Probab=98.18  E-value=6.9e-06  Score=55.36  Aligned_cols=61  Identities=10%  Similarity=-0.100  Sum_probs=39.5

Q ss_pred             HHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         48 FYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        48 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      ....|++.++ +|.+............+..+++.++.+++.||+|+|+.+..+..+..+..+
T Consensus       248 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~  309 (448)
T PRK09848        248 SASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYL  309 (448)
T ss_pred             hhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            3345555543 565544333333333556778889999999999999998887766555433

>PRK11462 putative transporter; Provisional

Probab=98.18  E-value=2.9e-05  Score=52.76  Aligned_cols=52  Identities=17%  Similarity=0.180  Sum_probs=34.1

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhh
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGL  100 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~  100 (116)
                      ....||..+..   |.+ ...........+..+++++++++++||+|+|+....+.
T Consensus       249 ~~~~y~~~y~~---g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~  300 (460)
T PRK11462        249 GAMMYYVTWIL---GTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTN  300 (460)
T ss_pred             hHhhhhhhhhc---CCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            33455555543   322 22334455666778889999999999999998876443

>KOG0255|consensus

Probab=98.15  E-value=4e-06  Score=57.52  Aligned_cols=59  Identities=22%  Similarity=0.167  Sum_probs=49.0

Q ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHHc
Q psy17792         57 SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLL  115 (116)
Q Consensus        57 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~  115 (116)
                      ....+.........+..++..+|+++.|.++||+|||++++.+.++..++....+++.+
T Consensus       112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~  170 (521)
T KOG0255|consen  112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN  170 (521)
T ss_pred             eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence            34555556667788889999999999999999999999999999999888877666543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.15  E-value=7.4e-06  Score=54.76  Aligned_cols=63  Identities=17%  Similarity=0.069  Sum_probs=48.7

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc----ccchh-HHhhhhHHHHHHHHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR----MGRRT-LHLYGLGGMFIFSIF  109 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr----~grr~-~~~~~~~~~~~~~~~  109 (116)
                      ..|..+++.++.|+++.+.+....+..+...+..++.|+++||    +|||| .++.+....+++.+.
T Consensus        19 ~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~   86 (437)
T TIGR00792        19 STYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL   86 (437)
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH
Confidence            3456666777899999999999999999999999999999997    67755 455665555544433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.15  E-value=5.6e-05  Score=49.79  Aligned_cols=85  Identities=16%  Similarity=0.073  Sum_probs=62.8

Q ss_pred             hhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc-chhHH
Q psy17792         18 ELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG-RRTLH   96 (116)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g-rr~~~   96 (116)
                      .++|++.-|.     +.+++..|...++....|.|.++.+.|+++.+++.......+.+.+.++..+++.+|.. +|+..
T Consensus       203 ~vw~~~~aW~-----vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~  277 (395)
T COG2807         203 KVWRSPLAWQ-----VTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLV  277 (395)
T ss_pred             ccccCchhHH-----HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence            3565554343     44455556666777888889999999999999999999999999999999999999765 55555


Q ss_pred             hhhhHHHHHHH
Q psy17792         97 LYGLGGMFIFS  107 (116)
Q Consensus        97 ~~~~~~~~~~~  107 (116)
                      +.....+.+..
T Consensus       278 ~~~~~~~l~G~  288 (395)
T COG2807         278 VLALLLMLVGL  288 (395)
T ss_pred             HHHHHHHHHHH
Confidence            55444444443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.14  E-value=3.7e-05  Score=54.28  Aligned_cols=65  Identities=12%  Similarity=0.086  Sum_probs=44.4

Q ss_pred             chhhhHHhHHHHHh-hcCCCcchhHHHHHHHHH-HHHHHHHHHHHhhhcccch--hHHhhhhHHHHHHH
Q psy17792         43 GINAVFYYSTALFE-SSGLSEKTAKFTTIGIGA-VMVTMTIISIPLMDRMGRR--TLHLYGLGGMFIFS  107 (116)
Q Consensus        43 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~l~dr~grr--~~~~~~~~~~~~~~  107 (116)
                      .......+.|.+++ ++|.++.++........+ +..++.+++|+++||++++  +....+.....+..
T Consensus       345 ~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~  413 (633)
T TIGR00805       345 AFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY  413 (633)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence            33444555665554 689998888877776665 5688999999999999844  45555554444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.13  E-value=4.2e-05  Score=51.26  Aligned_cols=70  Identities=14%  Similarity=0.009  Sum_probs=53.5

Q ss_pred             HHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc-hhHHhhhhHHHHHH
Q psy17792         37 LSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR-RTLHLYGLGGMFIF  106 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr-r~~~~~~~~~~~~~  106 (116)
                      .+.++..++....|.|.++++.|++..+.+...+...+..++..++.|.++||.++ |+.+....++.++.
T Consensus        11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~   81 (400)
T PF03825_consen   11 YFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALA   81 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHH
Confidence            33344445566667788899999999999999999999999999999999999864 55555544444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.12  E-value=5.5e-05  Score=50.05  Aligned_cols=58  Identities=12%  Similarity=0.103  Sum_probs=48.2

Q ss_pred             HHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792         37 LSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT   94 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~   94 (116)
                      ++....++.....+.|.+.++.|.+..+.+.......+...++.++.+.++||.||+.
T Consensus        13 ~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~   70 (382)
T TIGR00902        13 FFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHII   70 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence            3333444456677788999999999999999999999999999999999999999854

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG1330|consensus

Probab=98.09  E-value=2.7e-05  Score=52.65  Aligned_cols=69  Identities=12%  Similarity=-0.019  Sum_probs=57.1

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~  113 (116)
                      +.+..-.+.+-+.+|.+.+..+.++....++..+.++++|+++||+.||.++..|..+...+.+..++.
T Consensus        50 ~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs  118 (493)
T KOG1330|consen   50 YTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS  118 (493)
T ss_pred             hhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH
Confidence            334334455666789999999999999999999999999999999999999999988877777766654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.07  E-value=3.3e-05  Score=50.55  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         75 VMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        75 ~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ...+++++.|+++||+|||+++..+.++..+.....+.
T Consensus        47 ~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~   84 (394)
T TIGR00883        47 ARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL   84 (394)
T ss_pred             HhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence            33568899999999999999999888777766655543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.07  E-value=5.7e-05  Score=50.29  Aligned_cols=66  Identities=14%  Similarity=0.009  Sum_probs=59.4

Q ss_pred             hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      ..+....|.+.+.++.+..++.........+.++.+++.+++.+|+|+|+-++.|+.++++.+.++
T Consensus        30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF   95 (422)
T COG0738          30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF   95 (422)
T ss_pred             hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            345567899999999999999999999999999999999999999999999999999988887766

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.03  E-value=4.5e-05  Score=51.15  Aligned_cols=54  Identities=11%  Similarity=0.100  Sum_probs=40.0

Q ss_pred             hhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhh
Q psy17792         45 NAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLY   98 (116)
Q Consensus        45 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~   98 (116)
                      .....+.|..++ ..|++.++.+.......+..++..++.|.++||.|.||-++.
T Consensus        24 gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~   78 (412)
T PF01306_consen   24 GIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLW   78 (412)
T ss_dssp             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHH
T ss_pred             HHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHH
Confidence            333334455554 589999999999999999999999999999999997775543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.03  E-value=9.3e-05  Score=49.28  Aligned_cols=73  Identities=22%  Similarity=0.129  Sum_probs=52.9

Q ss_pred             HHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc-----cchh-HHhhhhHHHHHHHHHH
Q psy17792         37 LSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM-----GRRT-LHLYGLGGMFIFSIFI  110 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-----grr~-~~~~~~~~~~~~~~~~  110 (116)
                      ++.|...++....-.|.++++.|++.++.++.......  .+..+++|+++||+     |||| ++..+..+.+++...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l   85 (402)
T PRK11902          8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM   85 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence            44444555666677889999999999998877665554  68889999999999     8776 5666666665554443


Q ss_pred             H
Q psy17792        111 T  111 (116)
Q Consensus       111 ~  111 (116)
                      +
T Consensus        86 ~   86 (402)
T PRK11902         86 A   86 (402)
T ss_pred             H
Confidence            3

>PRK12382 putative transporter; Provisional

Probab=98.02  E-value=8.8e-05  Score=49.10  Aligned_cols=62  Identities=21%  Similarity=0.242  Sum_probs=41.6

Q ss_pred             hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792         46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF  109 (116)
Q Consensus        46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~  109 (116)
                      ....+.|.+.++.|.+.  .........+...++.++.+++.||+|||+.+..+.....+....
T Consensus       234 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~  295 (392)
T PRK12382        234 VIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLL  295 (392)
T ss_pred             HHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHH
Confidence            34445555566666543  334444556677888899999999999999888776655554433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.01  E-value=9.1e-05  Score=49.10  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=40.2

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      ...+.|.+.++.|.+  +.........++..++.++.+++.||+|||+.+..+.....+..
T Consensus       235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  293 (399)
T PRK05122        235 IATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGL  293 (399)
T ss_pred             HHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            334555555555653  33344556677788899999999999999998877665554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.98  E-value=0.00013  Score=54.58  Aligned_cols=33  Identities=9%  Similarity=0.079  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh
Q psy17792         65 AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL   97 (116)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~   97 (116)
                      ..+......+...+.++++|+++||+|||+++.
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~   86 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAK   86 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHH
Confidence            455566677888999999999999999999753

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.97  E-value=3.5e-05  Score=52.50  Aligned_cols=60  Identities=15%  Similarity=-0.010  Sum_probs=45.9

Q ss_pred             HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhh----cccch-hHHhhhhHHHHHHH
Q psy17792         48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD----RMGRR-TLHLYGLGGMFIFS  107 (116)
Q Consensus        48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~grr-~~~~~~~~~~~~~~  107 (116)
                      .|...++.+..|+++...+....+..+...+..++.|+++|    |+||| +.++.+....+++.
T Consensus        27 ~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         27 MYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL   91 (473)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence            34444555667999999999999999999999999999999    56985 45556666655543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.97  E-value=0.00012  Score=48.52  Aligned_cols=68  Identities=15%  Similarity=-0.003  Sum_probs=51.4

Q ss_pred             HHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHH--HHHHHHHHHHHHHH-HHhhhcccchhHHhhhh
Q psy17792         33 IVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTT--IGIGAVMVTMTIIS-IPLMDRMGRRTLHLYGL  100 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~dr~grr~~~~~~~  100 (116)
                      +...++.|-..++....+.|.++++.|.+..+.+...  .......++.+++. ++..||.||||..+...
T Consensus         6 ~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718         6 LGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence            3334556666667778889999999999999888764  55678888888877 55899999998864443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.95  E-value=0.00016  Score=45.57  Aligned_cols=67  Identities=19%  Similarity=0.056  Sum_probs=56.8

Q ss_pred             hhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         44 INAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        44 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      .+....|.|.+.+++|++.++........+++...| ++.|.+.|++|.+.++..|.....+....+-
T Consensus        18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~   84 (250)
T PF06813_consen   18 TYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLW   84 (250)
T ss_pred             ccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            456778999999999999999999999889888764 8889999999999999888887777665543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.95  E-value=0.00012  Score=50.79  Aligned_cols=64  Identities=13%  Similarity=0.078  Sum_probs=52.0

Q ss_pred             hHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792         50 YSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        50 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~  113 (116)
                      ..|.+.+ .+|.++...++.....++++++|+++.+++.+|+++++.+..+.++.+++.+.+++.
T Consensus       240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~  304 (524)
T PF05977_consen  240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS  304 (524)
T ss_pred             hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence            4566664 578888888889999999999999999999999999998888777777666655543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.90  E-value=0.00017  Score=47.75  Aligned_cols=52  Identities=6%  Similarity=0.013  Sum_probs=45.0

Q ss_pred             hchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792         42 SGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR   93 (116)
Q Consensus        42 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr   93 (116)
                      .+.+....+.|.+.++.|.+..+.++......+...++.++.+.++||+|||
T Consensus        18 ~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~   69 (382)
T PRK11128         18 FAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQL   69 (382)
T ss_pred             HHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcch
Confidence            3445566677888899999999999999999999999999999999999984

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.89  E-value=9.8e-05  Score=48.89  Aligned_cols=45  Identities=18%  Similarity=-0.011  Sum_probs=32.6

Q ss_pred             hHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792         50 YSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT   94 (116)
Q Consensus        50 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~   94 (116)
                      +.+.+.++ .|.+..+.........++.+++.++.+++.||.+|+.
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  274 (394)
T PRK11652        229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM  274 (394)
T ss_pred             hChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444 7888877777777777788888888889999888443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.88  E-value=0.00031  Score=46.53  Aligned_cols=70  Identities=17%  Similarity=0.061  Sum_probs=38.9

Q ss_pred             hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792         15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR   93 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr   93 (116)
                      +++++++++..+.     .....+.....++....|.|.++++.|.+.. .........+   .+.+..++++||.+||
T Consensus       184 ~~~~ll~~~~~~~-----~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~---~g~~g~~~~~d~~~r~  253 (368)
T TIGR00903       184 EFGALAGRKDLWI-----IGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAIL---AGLIGVAVIPDRVARA  253 (368)
T ss_pred             HHHHHHcChhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHH---HHHHHHHHhhHHhhhh
Confidence            3566776653322     2233333444445666788888888777653 3333333333   3444457888887654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09669 putative symporter YagG; Provisional

Probab=97.86  E-value=4.9e-05  Score=51.29  Aligned_cols=60  Identities=13%  Similarity=0.069  Sum_probs=46.3

Q ss_pred             HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc----ccchh-HHhhhhHHHHHHH
Q psy17792         48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR----MGRRT-LHLYGLGGMFIFS  107 (116)
Q Consensus        48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr----~grr~-~~~~~~~~~~~~~  107 (116)
                      .|..+++.+..|++....+....+..+...+..++.|+++||    +|||| .++.+....+++.
T Consensus        30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~   94 (444)
T PRK09669         30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVC   94 (444)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHH
Confidence            445555666799999999999999999999999999999998    77755 4555655554443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.84  E-value=0.00037  Score=46.44  Aligned_cols=47  Identities=6%  Similarity=-0.036  Sum_probs=39.8

Q ss_pred             HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhh
Q psy17792         54 LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGL  100 (116)
Q Consensus        54 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~  100 (116)
                      ..+.+|.++.+.+.......++..++++..+++.||.++|+++..+.
T Consensus       232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~  278 (393)
T PRK11195        232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI  278 (393)
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence            33457888888888888999999999999999999999888776664

>KOG0252|consensus

Probab=97.83  E-value=2.7e-05  Score=52.74  Aligned_cols=88  Identities=17%  Similarity=0.170  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHH-----HHHHH----HHHHHHHHHHHHHhhhcccchhHHh
Q psy17792         27 KPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKF-----TTIGI----GAVMVTMTIISIPLMDRMGRRTLHL   97 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~----~~~~~~~~~~~~~l~dr~grr~~~~   97 (116)
                      +.++. ....++..-..++....+...+++..|..+.+...     .....    ....++|.++...++|++|||+..+
T Consensus       304 ~~Llg-t~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~  382 (538)
T KOG0252|consen  304 KHLLG-TAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQL  382 (538)
T ss_pred             HHHHH-HHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHH
Confidence            34444 44444444444566777888999988776543222     12222    2223445556667899999999999


Q ss_pred             hhhHHHHHHHHHHHHHHc
Q psy17792         98 YGLGGMFIFSIFITISLL  115 (116)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~  115 (116)
                      .|+.++.+..+.++..|+
T Consensus       383 ~GF~~~~i~~~~~~~~y~  400 (538)
T KOG0252|consen  383 MGFFIMTIFFFVIAGPYN  400 (538)
T ss_pred             hhHHHHHHHHHHHcCCcc
Confidence            999999999998887764

>PRK10054 putative transporter; Provisional

Probab=97.82  E-value=0.0001  Score=49.09  Aligned_cols=49  Identities=16%  Similarity=0.040  Sum_probs=30.9

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         59 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        59 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      +.+............+.........+++.||.++|+.+..+.....+..
T Consensus       240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~  288 (395)
T PRK10054        240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGL  288 (395)
T ss_pred             chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHH
Confidence            3434333444444445555666778899999999998877665444433

>TIGR00901 2A0125 AmpG-related permease

Probab=97.77  E-value=0.00019  Score=46.88  Aligned_cols=60  Identities=22%  Similarity=0.175  Sum_probs=42.1

Q ss_pred             hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc-----cchhHH-hhhhHHHHHHH
Q psy17792         46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM-----GRRTLH-LYGLGGMFIFS  107 (116)
Q Consensus        46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-----grr~~~-~~~~~~~~~~~  107 (116)
                      ....-.|.+.++.|.+..+.+..... .+...+ .++.|.++||+     ||||.+ +.+.+..++..
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~   71 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLL   71 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHH
Confidence            34556788899999999887777544 333333 88999999998     898865 44554444443

>PRK09848 glucuronide transporter; Provisional

Probab=97.75  E-value=0.00014  Score=49.07  Aligned_cols=57  Identities=11%  Similarity=0.206  Sum_probs=44.0

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc----cchhHH-hhhhHHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM----GRRTLH-LYGLGGM  103 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~----grr~~~-~~~~~~~  103 (116)
                      ..|..+++.+..|++..+.+.......+...+..++.|+++||.    |||+.. ..+.+..
T Consensus        28 ~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~   89 (448)
T PRK09848         28 ALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPL   89 (448)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHH
Confidence            34455556666899999999999999999999999999999996    777654 4444433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.72  E-value=0.00054  Score=46.56  Aligned_cols=45  Identities=18%  Similarity=0.078  Sum_probs=35.7

Q ss_pred             hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17792         46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM   90 (116)
Q Consensus        46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~   90 (116)
                      ....+.|.+.++.|.+..+........+++..++.++.++++||.
T Consensus       259 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       259 APIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            344455656677899888888888888888999999999999973

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.69  E-value=0.00025  Score=53.02  Aligned_cols=58  Identities=12%  Similarity=-0.088  Sum_probs=43.0

Q ss_pred             HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792         48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI  105 (116)
Q Consensus        48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~  105 (116)
                      .+..+++.+.+|.+....++......++.+++.++.++++|+.++++.+..+.++.++
T Consensus       246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGL  303 (1140)
T ss_pred             HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHH
Confidence            3444444455788888888888999999999999999999888777655544444333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.67  E-value=0.0009  Score=45.00  Aligned_cols=62  Identities=16%  Similarity=0.097  Sum_probs=44.5

Q ss_pred             hhHHhHHHHHhhcC-CCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         46 AVFYYSTALFESSG-LSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        46 ~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      ....|.+..+++.| .+............+.-++.-...+++..|+|.|+++..+.+..++=.
T Consensus       225 ~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  225 AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            33445566677777 566555555556666677777889999999999999988877765533

>KOG0569|consensus

Probab=97.67  E-value=0.0016  Score=44.82  Aligned_cols=47  Identities=17%  Similarity=0.055  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792         67 FTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~  113 (116)
                      .......+++++|++..++++||+|||..+....+...+......++
T Consensus        64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s  110 (485)
T KOG0569|consen   64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLS  110 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            45556688999999999999999999988887776666665555444

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.66  E-value=0.0012  Score=44.19  Aligned_cols=90  Identities=17%  Similarity=0.194  Sum_probs=59.9

Q ss_pred             hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792         15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR   93 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr   93 (116)
                      ...++++++..+.-. +..+++...+.    ....+.+.+..+ .|.+..++.......+.+..+|-+++.++..|+...
T Consensus       228 ~~~~l~~~~~~~~gv-l~~FlYVG~Ev----a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~  302 (422)
T COG0738         228 GLSSLFQNKHLRLGV-LAIFLYVGAEV----AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE  302 (422)
T ss_pred             hHHHHHhChHHHHHH-HHHHHHHhHHH----HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            456778776444322 22232232222    233344555544 788888899999999999999999999999999999


Q ss_pred             hHHhhhhHHHHHHHHH
Q psy17792         94 TLHLYGLGGMFIFSIF  109 (116)
Q Consensus        94 ~~~~~~~~~~~~~~~~  109 (116)
                      |.+...+++..+.++.
T Consensus       303 k~Laf~a~~~ill~~~  318 (422)
T COG0738         303 KYLAFYALIAILLLLA  318 (422)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9887766554444433

>KOG2504|consensus

Probab=97.63  E-value=0.00099  Score=46.16  Aligned_cols=86  Identities=27%  Similarity=0.221  Sum_probs=62.2

Q ss_pred             hhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh--
Q psy17792         17 SELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT--   94 (116)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~--   94 (116)
                      .++++++     .++...........++....+++|.+.++.|.+..+........++...++-++.|+++|+...++  
T Consensus       292 ~~ll~~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~  366 (509)
T KOG2504|consen  292 LSLLKDP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV  366 (509)
T ss_pred             HHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence            3555553     333344444455556667777888888899999999999999999999999999999999998433  


Q ss_pred             HHhhhhHHHHHHH
Q psy17792         95 LHLYGLGGMFIFS  107 (116)
Q Consensus        95 ~~~~~~~~~~~~~  107 (116)
                      +...+.++.++..
T Consensus       367 ~~~~~ll~~gl~~  379 (509)
T KOG2504|consen  367 LFLLTLLIAGLAR  379 (509)
T ss_pred             HHHHHHHHHHHHH
Confidence            4445555555544

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.61  E-value=0.0013  Score=45.30  Aligned_cols=70  Identities=20%  Similarity=0.092  Sum_probs=44.9

Q ss_pred             HHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc-----cchhH-HhhhhHHHHHHHHHH
Q psy17792         39 QQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM-----GRRTL-HLYGLGGMFIFSIFI  110 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-----grr~~-~~~~~~~~~~~~~~~  110 (116)
                      .+...........|...++.|.+..+..........  .++.++++.++||+     |||+. +..+.+...++...+
T Consensus        23 ~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~   98 (491)
T PRK11010         23 ASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAM   98 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHH
Confidence            333344455566788888888888776655322222  26889999999999     99985 445555554444333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.60  E-value=0.00058  Score=45.84  Aligned_cols=49  Identities=12%  Similarity=0.190  Sum_probs=33.2

Q ss_pred             hhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhh-hcccch
Q psy17792         45 NAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLM-DRMGRR   93 (116)
Q Consensus        45 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~-dr~grr   93 (116)
                      .....+.|.++++ .|.+..+..+.......+..+++.+.+.+. |+.++|
T Consensus       235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~  285 (413)
T PRK15403        235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPR  285 (413)
T ss_pred             HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Confidence            3444456766655 588888887777777778888888777765 444444

>KOG3762|consensus

Probab=97.57  E-value=0.00023  Score=49.28  Aligned_cols=63  Identities=19%  Similarity=0.114  Sum_probs=53.2

Q ss_pred             chhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792         43 GINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI  105 (116)
Q Consensus        43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~  105 (116)
                      ..+.+....+.+.+++|+++.+.+.+....-++.+.+.+++|+++||+.+|+.++.+..+..+
T Consensus        26 ~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v   88 (618)
T KOG3762|consen   26 RFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV   88 (618)
T ss_pred             cccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            345667788889999999999999999999999999999999999999988877766555444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.57  E-value=0.0012  Score=44.11  Aligned_cols=59  Identities=12%  Similarity=-0.027  Sum_probs=33.2

Q ss_pred             HhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhh-hcccchhHHhhhhHHHHHHH
Q psy17792         49 YYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLM-DRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        49 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~-dr~grr~~~~~~~~~~~~~~  107 (116)
                      .+.|.+.++.+.++.+.........+....+....++.. ||++.++.+..+....++..
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  288 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSM  288 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            456776666555666665555555555555555555555 55665665555554444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.54  E-value=6.2e-05  Score=50.56  Aligned_cols=64  Identities=19%  Similarity=0.055  Sum_probs=49.7

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhh----cccchhHHh-hhhHHHHHHHHHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD----RMGRRTLHL-YGLGGMFIFSIFI  110 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~grr~~~~-~~~~~~~~~~~~~  110 (116)
                      ..+..+++.+..|+++...+.......+...+..++.|.++|    |+|||+..+ .|....+++...+
T Consensus        21 ~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   21 SSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHh
Confidence            345666777788999988888888888999999999999999    899887664 5666665554443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.52  E-value=7.9e-06  Score=54.91  Aligned_cols=49  Identities=24%  Similarity=0.171  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792         65 AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~  113 (116)
                      ..+......++..+|++++|+++||+|||+.+..+.....++.++.+++
T Consensus        48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~   96 (451)
T PF00083_consen   48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA   96 (451)
T ss_pred             HHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc
Confidence            4567778889999999999999999999999998888777776665544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.49  E-value=0.00026  Score=47.65  Aligned_cols=45  Identities=22%  Similarity=0.025  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         66 KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      +......-+.-.+...+.+++.+|+|.|+.++.+..++.+=....
T Consensus       262 G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~  306 (412)
T PF01306_consen  262 GYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGS  306 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHH
Confidence            344444455567777788999999999999888776666544333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00788 fbt folate/biopterin transporter

Probab=97.44  E-value=0.0019  Score=44.22  Aligned_cols=75  Identities=9%  Similarity=-0.194  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc-----chhHHhhhhHH
Q psy17792         28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG-----RRTLHLYGLGG  102 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g-----rr~~~~~~~~~  102 (116)
                      .....+...++.+-..........|.+.+++|++..+.........+...+-.+ +|.++||++     ||+.++.+.+.
T Consensus        26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            333334433444444433334444555567899998887777777777666544 999999997     66666666555


Q ss_pred             H
Q psy17792        103 M  103 (116)
Q Consensus       103 ~  103 (116)
                      .
T Consensus       105 ~  105 (468)
T TIGR00788       105 G  105 (468)
T ss_pred             H
Confidence            4

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.44  E-value=0.00049  Score=38.38  Aligned_cols=40  Identities=25%  Similarity=0.303  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         71 GIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        71 ~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      ...++..++.++.+++.||+|||+.+..+.....+.....
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~   45 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF   45 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence            3456788889999999999999999887766655554433

>KOG4686|consensus

Probab=97.44  E-value=0.0016  Score=42.40  Aligned_cols=46  Identities=13%  Similarity=0.091  Sum_probs=39.1

Q ss_pred             HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhh
Q psy17792         54 LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYG   99 (116)
Q Consensus        54 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~   99 (116)
                      +.+++|+++..++...........+.+++.|.++||.||+-+.+.+
T Consensus       291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~  336 (459)
T KOG4686|consen  291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS  336 (459)
T ss_pred             HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH
Confidence            4467999998888888888888999999999999999999766544

>KOG0255|consensus

Probab=97.38  E-value=0.0041  Score=42.98  Aligned_cols=91  Identities=18%  Similarity=0.103  Sum_probs=56.5

Q ss_pred             chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHh-HHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy17792         14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYY-STALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR   92 (116)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr   92 (116)
                      ..+.++++.++.++.++.....++...      ..|+ .+.....+|.+.   .......+....+.....+...|++||
T Consensus       309 ~~~~~l~~~~~l~~~~~~~~~~~~~~~------~~y~gl~~~~~~lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR  379 (521)
T KOG0255|consen  309 ISFLDLFRTPRLRYRTLYLLFIWFVFS------LVYYGLSLNVSGLGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGR  379 (521)
T ss_pred             CchhhhhcCHHHHHHHHHHHHHHHHHh------HHHHhhhhhhhhcCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence            456788887766776666555543222      2222 122222333332   333444444677777777899999999


Q ss_pred             hhHHhhhhHHHHHHHHHHHHH
Q psy17792         93 RTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        93 r~~~~~~~~~~~~~~~~~~~~  113 (116)
                      |.....+.....++++..++.
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~  400 (521)
T KOG0255|consen  380 RPPLFLSLFLAGIGLLLFGWL  400 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999888888777766654

>KOG3764|consensus

Probab=97.38  E-value=0.00041  Score=46.49  Aligned_cols=56  Identities=18%  Similarity=0.185  Sum_probs=48.9

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792         58 SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        58 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~  113 (116)
                      .+.+.++.+++.+...+.+++.+++.|.+.||+|+|-+++.|...+..+.+++++.
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg  156 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG  156 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc
Confidence            34555677888899999999999999999999999999999999988888887764

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.37  E-value=0.002  Score=43.23  Aligned_cols=63  Identities=16%  Similarity=0.027  Sum_probs=49.6

Q ss_pred             hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhh-cccchhHHhhhhHHHHHHHHHHHH
Q psy17792         50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD-RMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d-r~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      .-||--+-+|++..+...++.....+.+++....+++.. |.+++++-.+|+.+...+...+.+
T Consensus       231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~  294 (403)
T PF03209_consen  231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL  294 (403)
T ss_pred             cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            445555668999999999999999999999999887665 778888777888877776665543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.34  E-value=0.0023  Score=44.05  Aligned_cols=44  Identities=16%  Similarity=-0.085  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccc-hhHHhhhhHHHHHHHHHH
Q psy17792         67 FTTIGIGAVMVTMTIISIPLMDRMGR-RTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~l~dr~gr-r~~~~~~~~~~~~~~~~~  110 (116)
                      +.....++...+.+++..++.+|+|+ |++...+.++.++++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~  353 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAAT  353 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            34455566667777888999999995 666677755555554443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2504|consensus

Probab=97.32  E-value=0.0025  Score=44.23  Aligned_cols=65  Identities=15%  Similarity=0.098  Sum_probs=55.1

Q ss_pred             HhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792         49 YYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        49 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~  113 (116)
                      .+.+.+.++++.+..+..+...+.........++.+.+.||+|.|++.+.|.++..++++.-.++
T Consensus        67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~  131 (509)
T KOG2504|consen   67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA  131 (509)
T ss_pred             hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            45577888899998888899999999999999999999999999999999888877776655443

>KOG0637|consensus

Probab=97.31  E-value=0.00021  Score=48.41  Aligned_cols=84  Identities=18%  Similarity=0.116  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc----ccchhHHhhh-hH
Q psy17792         27 KPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR----MGRRTLHLYG-LG  101 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr----~grr~~~~~~-~~  101 (116)
                      +.++....+.+..++....-..|. |-+++++|.+.+.....-...-+.+++..++.|..+||    +||||.++.. ..
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~-tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYL-TPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc-cHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            445555556666666654444555 44566789988765555555556677778888999995    7898877654 44


Q ss_pred             HHHHHHHHHH
Q psy17792        102 GMFIFSIFIT  111 (116)
Q Consensus       102 ~~~~~~~~~~  111 (116)
                      +..+.+..++
T Consensus       111 ~i~~~l~Lig  120 (498)
T KOG0637|consen  111 LIAVSLFLIG  120 (498)
T ss_pred             HHHHHHhhhh
Confidence            4444444443

>KOG2563|consensus

Probab=97.22  E-value=0.0056  Score=41.77  Aligned_cols=65  Identities=22%  Similarity=0.245  Sum_probs=47.3

Q ss_pred             HhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         40 QFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      ||..|..+..+...++   | +.....|.+.++.+..++..+.+.|+.||+|-|.....+..+..+...
T Consensus        60 qWI~ya~i~n~~~~~Y---g-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~  124 (480)
T KOG2563|consen   60 QWIQYAPINNYVNSFY---G-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAW  124 (480)
T ss_pred             hheeehhHHHHHHHHh---c-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence            3444444443333333   4 555677889999999999999999999999999988888776665543

>KOG0253|consensus

Probab=97.07  E-value=0.0022  Score=43.05  Aligned_cols=63  Identities=22%  Similarity=0.102  Sum_probs=48.2

Q ss_pred             hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ..|..-..-|.+..+...+......++.+++..+|...|++|||+.+..+.....+...+-+.
T Consensus       100 i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~  162 (528)
T KOG0253|consen  100 ILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA  162 (528)
T ss_pred             HHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC
Confidence            334333345666777778888889999999999999999999999998887776665554443

>PRK11462 putative transporter; Provisional

Probab=97.07  E-value=0.004  Score=42.58  Aligned_cols=61  Identities=16%  Similarity=0.067  Sum_probs=46.2

Q ss_pred             HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc----ccchhHH-hhhhHHHHHHHH
Q psy17792         48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR----MGRRTLH-LYGLGGMFIFSI  108 (116)
Q Consensus        48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr----~grr~~~-~~~~~~~~~~~~  108 (116)
                      .|...++.+..|+++...+....+.-+...+..++.|+++||    +|||+.. +.+....++...
T Consensus        30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            344445556789999999999999999999999999999996    6887655 456555555443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.05  E-value=0.0049  Score=44.10  Aligned_cols=70  Identities=13%  Similarity=0.048  Sum_probs=51.4

Q ss_pred             chhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc-ccchhHHhhhhHHHHHHHHHHHH
Q psy17792         43 GINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      .|+....+..++.+.+|.+...+...........-+..+++|+++|+ +||++.+..+.+...+...++++
T Consensus         3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai   73 (654)
T TIGR00926         3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF   73 (654)
T ss_pred             eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            34444556666677788888877777777777778888899999996 79999998887776666555443

>KOG2325|consensus

Probab=97.03  E-value=0.003  Score=43.45  Aligned_cols=59  Identities=7%  Similarity=-0.026  Sum_probs=44.3

Q ss_pred             HHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc-hhHHhhhhHHHHHHHHHH
Q psy17792         52 TALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR-RTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        52 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr-r~~~~~~~~~~~~~~~~~  110 (116)
                      ||..+ +.+.+.+..++..+...++..++++.+|+-..|-+. |+.++.|++++.++.++.
T Consensus        59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY  119 (488)
T KOG2325|consen   59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLY  119 (488)
T ss_pred             hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHH
Confidence            44443 356666777888899999999999999999999985 666666666666655554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.76  E-value=0.022  Score=38.91  Aligned_cols=61  Identities=20%  Similarity=0.092  Sum_probs=48.5

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792         53 ALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS  113 (116)
Q Consensus        53 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~  113 (116)
                      .+..+.|+++...+..-....+.++.+++..+++.+|+|-.+.-.++......+......+
T Consensus       283 ~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~  343 (432)
T PF06963_consen  283 AYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVS  343 (432)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence            3344559999888888888899999999999999999998888888877666555544433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.69  E-value=0.0068  Score=41.61  Aligned_cols=61  Identities=20%  Similarity=0.119  Sum_probs=46.3

Q ss_pred             hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc----ccchhH-HhhhhHHHHHHHHHH
Q psy17792         50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR----MGRRTL-HLYGLGGMFIFSIFI  110 (116)
Q Consensus        50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr----~grr~~-~~~~~~~~~~~~~~~  110 (116)
                      .+-++.+..|+++..++....+.-+...+..++.|.++||    +||+|. ++++.+..++...+.
T Consensus        35 Ll~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~  100 (467)
T COG2211          35 LLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLL  100 (467)
T ss_pred             HHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHH
Confidence            3334445689999999988999999999999999999995    677654 456767666655443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.64  E-value=0.00047  Score=48.04  Aligned_cols=72  Identities=14%  Similarity=-0.018  Sum_probs=0.0

Q ss_pred             hhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         41 FSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ........--.+++.++++++..+++++.....++..+..++..+..+|..|.+++-.|.+++++..+++++
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence            333334444567888899999999999999999999999999999999988888988999998888877765

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2532|consensus

Probab=96.63  E-value=0.0084  Score=41.27  Aligned_cols=54  Identities=11%  Similarity=-0.015  Sum_probs=44.8

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         58 SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        58 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      .+.+..+.+........+.+++.++++++.||+|-|+++..+.++.++..++.-
T Consensus        68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P  121 (466)
T KOG2532|consen   68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTP  121 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence            345556677888888999999999999999999999999988887777666553

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.60  E-value=0.026  Score=37.69  Aligned_cols=64  Identities=17%  Similarity=-0.025  Sum_probs=54.8

Q ss_pred             hhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         44 INAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        44 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      ...+....+.+.++.|++.+.++..+.+.-+.....+++.+++.+|+|.++.+..+.+..++..
T Consensus        28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~   91 (395)
T COG2807          28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGI   91 (395)
T ss_pred             hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3455667788889999999999999999999999999999999999999998888776655543

>KOG3626|consensus

Probab=96.49  E-value=0.037  Score=40.12  Aligned_cols=60  Identities=15%  Similarity=0.129  Sum_probs=39.3

Q ss_pred             HHHHHHHHhhchhhhHHhHH-HHHhhcCCCcchhHHHHHHHHHH-HHHHHHHHHHhhhcccc
Q psy17792         33 IVMQLSQQFSGINAVFYYST-ALFESSGLSEKTAKFTTIGIGAV-MVTMTIISIPLMDRMGR   92 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~l~dr~gr   92 (116)
                      ..+........+.....|.| |+.+++|.+...+..+.....+. ..+|.+++|++..|+.-
T Consensus       397 ~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl  458 (735)
T KOG3626|consen  397 VVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL  458 (735)
T ss_pred             HHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence            33344444444444444445 56667999999888877666554 56777788999998753

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.47  E-value=0.057  Score=33.56  Aligned_cols=57  Identities=21%  Similarity=0.125  Sum_probs=40.9

Q ss_pred             hhHHhHHHHHhhcCCCc--chhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792         46 AVFYYSTALFESSGLSE--KTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG  102 (116)
Q Consensus        46 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~  102 (116)
                      ......+....+.+.+.  ...........+....+.++.|.+.||.|||+.+..+...
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   78 (338)
T COG0477          20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLL   78 (338)
T ss_pred             hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHH
Confidence            33445566666665554  3566777777778888889999999999999777766644

>TIGR00788 fbt folate/biopterin transporter

Probab=96.30  E-value=0.016  Score=39.78  Aligned_cols=52  Identities=6%  Similarity=-0.250  Sum_probs=45.1

Q ss_pred             hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         56 ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        56 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      +.+|.++.+.+......+++.+++....++..+|++.|+++..+.+..++..
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~  332 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSS  332 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence            4579999999888888889999999999999999999999988877766654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.22  E-value=0.065  Score=31.52  Aligned_cols=69  Identities=10%  Similarity=0.172  Sum_probs=44.9

Q ss_pred             HHHhhchhhhHHhHHHHHhhcCC------CcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         38 SQQFSGINAVFYYSTALFESSGL------SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      +..+.++.........++++.+.      ++........+......+.+++.+.+.+++|.|+.++.|.+...+.
T Consensus         6 ~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y   80 (156)
T PF05978_consen    6 MFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIY   80 (156)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33344445554455555554332      2223344556667778888899999999999999998887766543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.16  E-value=0.14  Score=36.54  Aligned_cols=64  Identities=13%  Similarity=0.146  Sum_probs=40.5

Q ss_pred             hhhhHHhHHHHHhhcCCCcc---hhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh-hhhHHHHHHH
Q psy17792         44 INAVFYYSTALFESSGLSEK---TAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL-YGLGGMFIFS  107 (116)
Q Consensus        44 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~-~~~~~~~~~~  107 (116)
                      +....+|+..+..-.+.+..   +..+.....+.+...+.++.+.+..+++|-|..+ .+...+.+++
T Consensus       327 ~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~  394 (599)
T PF06609_consen  327 FSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFC  394 (599)
T ss_pred             HHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence            33345555444444444432   4556677778888888899999999888777654 5555555443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG4332|consensus

Probab=95.83  E-value=0.0053  Score=39.71  Aligned_cols=61  Identities=15%  Similarity=0.033  Sum_probs=39.5

Q ss_pred             hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      ...|.-+++++.|....+.................+.|-++||.|||+..+..++...+++
T Consensus        56 QgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC  116 (454)
T KOG4332|consen   56 QGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC  116 (454)
T ss_pred             cCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH
Confidence            3334444556667776665555444444556666778889999999998776665555444

>KOG2563|consensus

Probab=95.59  E-value=0.28  Score=33.89  Aligned_cols=39  Identities=13%  Similarity=-0.016  Sum_probs=32.2

Q ss_pred             hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792         56 ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT   94 (116)
Q Consensus        56 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~   94 (116)
                      ...|.+...++.......+.+.+++.++|.+.||.+.=+
T Consensus       294 ~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk  332 (480)
T KOG2563|consen  294 CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK  332 (480)
T ss_pred             ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence            345677677888888889999999999999999987544

>KOG2816|consensus

Probab=95.12  E-value=0.38  Score=33.41  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         72 IGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        72 ~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      .++..++.+...|.++||+|||..+........+...
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~  107 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPAL  107 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHH
Confidence            3567788888999999999999998877665554433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.04  E-value=0.0062  Score=42.62  Aligned_cols=59  Identities=10%  Similarity=-0.016  Sum_probs=0.0

Q ss_pred             HHHHHHHhhchhhhHHhHH-HHHhhcCCCcchhHHHHHHHH-HHHHHHHHHHHHhhhcccc
Q psy17792         34 VMQLSQQFSGINAVFYYST-ALFESSGLSEKTAKFTTIGIG-AVMVTMTIISIPLMDRMGR   92 (116)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~l~dr~gr   92 (116)
                      .+..............|.| |+..+++.++.++..+..... -++.+|.+++|++.+|+.-
T Consensus       311 ~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl  371 (539)
T PF03137_consen  311 ILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKL  371 (539)
T ss_dssp             -------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecC
Confidence            3333333334444444555 555578999887766655444 4677888899999999853

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3574|consensus

Probab=94.94  E-value=0.23  Score=33.89  Aligned_cols=79  Identities=15%  Similarity=0.222  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhh-----cccchhHHhh-h
Q psy17792         26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD-----RMGRRTLHLY-G   99 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d-----r~grr~~~~~-~   99 (116)
                      ++.+....++ +..|-..++... -.|++++.-|.+-++........+  -.-.-+++..++|     |+||||..+. +
T Consensus        30 ~~~illLl~L-YllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~  105 (510)
T KOG3574|consen   30 RSSILLLLFL-YLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPC  105 (510)
T ss_pred             hhhHHHHHHH-HHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeeh
Confidence            4445444444 455555555555 789999877777655443333222  1222334555666     9999986654 3


Q ss_pred             hHHHHHHHH
Q psy17792        100 LGGMFIFSI  108 (116)
Q Consensus       100 ~~~~~~~~~  108 (116)
                      ..+.+..+.
T Consensus       106 q~llG~~ml  114 (510)
T KOG3574|consen  106 QYLLGLFML  114 (510)
T ss_pred             HHHHHHHHH
Confidence            344444433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=94.83  E-value=0.89  Score=31.74  Aligned_cols=52  Identities=12%  Similarity=0.167  Sum_probs=36.0

Q ss_pred             hhHHHHHHHHHHHHHH-HHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHHc
Q psy17792         64 TAKFTTIGIGAVMVTM-TIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLL  115 (116)
Q Consensus        64 ~~~~~~~~~~~~~~~~-~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~  115 (116)
                      ...+.-....+...+. .++.+++++|++|++++-.....+......+++..+
T Consensus        44 ~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~   96 (472)
T TIGR00769        44 IIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIY   96 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444444444 778899999999999998877777777666666543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=94.60  E-value=0.51  Score=32.86  Aligned_cols=42  Identities=14%  Similarity=0.037  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhh-HHHHHHHH
Q psy17792         67 FTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGL-GGMFIFSI  108 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~-~~~~~~~~  108 (116)
                      ....+..+...+..++.|-++|+-|+||.++..+ .++.++..
T Consensus        74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~  116 (477)
T PF11700_consen   74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATA  116 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHH
Confidence            4556667778888888999999999888766543 33333333

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.17  E-value=0.71  Score=31.62  Aligned_cols=69  Identities=9%  Similarity=-0.025  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCC---cchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh
Q psy17792         29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLS---EKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL   97 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~   97 (116)
                      .++...+++....+|+.-+.+|.-.+.++..-+   ..-.+..-+...+.+.++++..|++-.++.+-.-+.
T Consensus       248 ~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~  319 (412)
T PF01770_consen  248 RLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELA  319 (412)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHH
Confidence            334455667777788777777777777776211   222344555566667777788888866666654443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=94.08  E-value=0.61  Score=32.89  Aligned_cols=72  Identities=13%  Similarity=0.190  Sum_probs=36.1

Q ss_pred             hhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCC-c----chhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792         17 SELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLS-E----KTAKFTTIGIGAVMVTMTIISIPLMDRMG   91 (116)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~----~~~~~~~~~~~~~~~~~~~~~~~l~dr~g   91 (116)
                      .|+||.|+  ++.++..++....|........    .++...|.- +    .-.........+.+.++...++++-..+|
T Consensus       252 gDVFR~P~--~~~lls~lvG~G~Qll~~~~~~----~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~  325 (521)
T PF02990_consen  252 GDVFRPPK--HPMLLSALVGTGIQLLFMALVT----LFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFG  325 (521)
T ss_pred             HHHhcCcC--CchHHHhHhcchhhhhHHHHHH----HHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence            37898885  4455555555555544432221    222222321 1    11223344445566677777777777676


Q ss_pred             chh
Q psy17792         92 RRT   94 (116)
Q Consensus        92 rr~   94 (116)
                      .|+
T Consensus       326 g~~  328 (521)
T PF02990_consen  326 GKK  328 (521)
T ss_pred             CCc
Confidence            543

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

>KOG3626|consensus

Probab=93.96  E-value=0.067  Score=38.88  Aligned_cols=84  Identities=12%  Similarity=-0.025  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      .+.+.....+.+......+..-...+.++++++..+.+++...+.++..+...+..+..-|..|.+++-.|.+.+++..+
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl  177 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL  177 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence            33444444444443334445556677788999999999988999999999999999999999999999999999988887


Q ss_pred             HHHH
Q psy17792        109 FITI  112 (116)
Q Consensus       109 ~~~~  112 (116)
                      +.++
T Consensus       178 l~al  181 (735)
T KOG3626|consen  178 LFAL  181 (735)
T ss_pred             HHhC
Confidence            7654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=93.81  E-value=0.77  Score=32.00  Aligned_cols=42  Identities=10%  Similarity=-0.097  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccchhH-------HhhhhHHHHHHHH
Q psy17792         67 FTTIGIGAVMVTMTIISIPLMDRMGRRTL-------HLYGLGGMFIFSI  108 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~-------~~~~~~~~~~~~~  108 (116)
                      +......+..++.+++.+++.||.+||+.       +..|.+..+++.+
T Consensus       313 ~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~  361 (489)
T PRK10207        313 SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFL  361 (489)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            44445556677788888999999999873       5566655554443

>KOG1237|consensus

Probab=93.40  E-value=2.1  Score=30.72  Aligned_cols=87  Identities=14%  Similarity=-0.016  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc-ccchhHHhhhhHHHH
Q psy17792         26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRTLHLYGLGGMF  104 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~~~~~~~~~~  104 (116)
                      |+.....+....+...+.++.......++...++.+...+.-.............+.+++++|- +||=+++..+.++..
T Consensus        36 ~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~  115 (571)
T KOG1237|consen   36 WLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISL  115 (571)
T ss_pred             hHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4444444444445455554455566677777888877655555555566677778889999996 477788888877776


Q ss_pred             HHHHHHHH
Q psy17792        105 IFSIFITI  112 (116)
Q Consensus       105 ~~~~~~~~  112 (116)
                      .....+..
T Consensus       116 ~G~~~lt~  123 (571)
T KOG1237|consen  116 LGLFGLTL  123 (571)
T ss_pred             HHHHHHHH
Confidence            66555443

>KOG2533|consensus

Probab=93.38  E-value=1.6  Score=30.67  Aligned_cols=43  Identities=12%  Similarity=-0.169  Sum_probs=33.8

Q ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhh
Q psy17792         57 SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYG   99 (116)
Q Consensus        57 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~   99 (116)
                      +.++...+-+....++.++..++.++++.+.||++-.+.+...
T Consensus        75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~  117 (495)
T KOG2533|consen   75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVS  117 (495)
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHH
Confidence            3455556677888999999999999999999999955554433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=93.27  E-value=0.64  Score=31.93  Aligned_cols=63  Identities=13%  Similarity=0.163  Sum_probs=35.7

Q ss_pred             HHhHHHHHhhcCC---Ccchh----HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhh-HHHHHHHHHH
Q psy17792         48 FYYSTALFESSGL---SEKTA----KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGL-GGMFIFSIFI  110 (116)
Q Consensus        48 ~~~~~~~~~~~g~---~~~~~----~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~-~~~~~~~~~~  110 (116)
                      .++++|+.+..+.   ++.+.    +....+..+...+.+++-|.++|+.|+||.....+ .+..++.+.+
T Consensus        36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L  106 (438)
T COG2270          36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLL  106 (438)
T ss_pred             ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHH
Confidence            3455555554433   44322    23344555666777778899999999887665443 4444444333

>KOG3764|consensus

Probab=93.24  E-value=0.058  Score=36.68  Aligned_cols=42  Identities=10%  Similarity=-0.054  Sum_probs=30.6

Q ss_pred             HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q psy17792         54 LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTL   95 (116)
Q Consensus        54 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~   95 (116)
                      ..+++..+.-+.+.......+...+++.+.|.++||++.-++
T Consensus       297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w  338 (464)
T KOG3764|consen  297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRW  338 (464)
T ss_pred             HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhH
Confidence            455666444466666666778889999999999999994333

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.14  E-value=0.72  Score=25.40  Aligned_cols=31  Identities=13%  Similarity=-0.092  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHhhhcc-cchhHHhhhhHHHH
Q psy17792         74 AVMVTMTIISIPLMDRM-GRRTLHLYGLGGMF  104 (116)
Q Consensus        74 ~~~~~~~~~~~~l~dr~-grr~~~~~~~~~~~  104 (116)
                      +.+.+.....||+.||+ |-+++.++.+++..
T Consensus        53 IsGilVGa~iG~llD~~agTsPwglIv~lllG   84 (116)
T COG5336          53 ISGILVGAGIGWLLDKFAGTSPWGLIVFLLLG   84 (116)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            34555556678888886 66666655544433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.13  E-value=3  Score=29.36  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792         68 TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF  104 (116)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~  104 (116)
                      .....++...+..++++.+.+|+|.+......-+...
T Consensus       324 ~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~l  360 (491)
T PF03219_consen  324 FSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVIL  360 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Confidence            3445566667777888999999999887766544333

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=91.38  E-value=1.2  Score=28.73  Aligned_cols=16  Identities=25%  Similarity=0.158  Sum_probs=11.3

Q ss_pred             ccchhhhhhccccchH
Q psy17792         12 SKISMSELLCSSTLRK   27 (116)
Q Consensus        12 ~~~~~~~~~~~~~~~~   27 (116)
                      ++.+..+.+|++..|+
T Consensus        83 ~~~s~~~~LK~K~tw~   98 (267)
T PF07672_consen   83 KKPSYKSILKEKETWK   98 (267)
T ss_pred             ccchHHHHHccchHHH
Confidence            4467788888876664

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=91.20  E-value=0.46  Score=32.55  Aligned_cols=48  Identities=6%  Similarity=-0.110  Sum_probs=34.2

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         59 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        59 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      |+++...+....+.+++.++|..+......+...|+++..+.+..++.
T Consensus       251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~  298 (433)
T PF03092_consen  251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLA  298 (433)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            366666666777777888888888877777778888877766555443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PTZ00207 hypothetical protein; Provisional

Probab=90.18  E-value=2.5  Score=30.52  Aligned_cols=68  Identities=9%  Similarity=0.052  Sum_probs=40.2

Q ss_pred             hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhc-CCCcch--hHHHHHHHHHHHHHHHHHHHHhh
Q psy17792         15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESS-GLSEKT--AKFTTIGIGAVMVTMTIISIPLM   87 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~~~l~   87 (116)
                      ++++.+++.++|     +.+..+++..........-..++.+.+ |.+.+.  ...+..+.+++..+|-+.+|+++
T Consensus       345 t~~q~l~~~d~W-----ll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~  415 (591)
T PTZ00207        345 TFIEGLKTARLW-----CLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE  415 (591)
T ss_pred             hHHHHHhchhHH-----HHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH
Confidence            444544443333     344444444444445556667888888 763322  22266777888888888888777

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=90.12  E-value=1.6  Score=30.01  Aligned_cols=59  Identities=14%  Similarity=0.022  Sum_probs=36.1

Q ss_pred             HHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc-----chhHHhhhhHHHHHHHHHH
Q psy17792         51 STALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG-----RRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        51 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g-----rr~~~~~~~~~~~~~~~~~  110 (116)
                      .|++.+++|+++.+...+.....+ -...-++.|.++|-+-     ||+-++.+.++..++...+
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~   76 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVL   76 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHH
Confidence            356677899998776555444433 2445578899999873     4444455666554444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=90.12  E-value=5.1  Score=28.34  Aligned_cols=41  Identities=22%  Similarity=0.271  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHHc
Q psy17792         75 VMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLL  115 (116)
Q Consensus        75 ~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~  115 (116)
                      .+++..++..++.++..|++++-.....+..+.++++...+
T Consensus        74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~  114 (509)
T COG3202          74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIY  114 (509)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46777788899999999999998877777777777776654

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=90.00  E-value=5.2  Score=28.24  Aligned_cols=41  Identities=22%  Similarity=0.282  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHHc
Q psy17792         75 VMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLL  115 (116)
Q Consensus        75 ~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~  115 (116)
                      ..++...+..+++|+++|.+++-............+++..|
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vly  111 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLY  111 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555667789999999999998877777777777776654

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1330|consensus

Probab=88.60  E-value=3.3  Score=29.07  Aligned_cols=34  Identities=9%  Similarity=-0.058  Sum_probs=28.3

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792         58 SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG   91 (116)
Q Consensus        58 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g   91 (116)
                      .|.+..+..+...+...++.+|.+++|.++||+.
T Consensus       278 ~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~  311 (493)
T KOG1330|consen  278 IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLS  311 (493)
T ss_pred             hCCccccchhhhhHHHhhchhhheehHHHHHHHH
Confidence            4556666778888999999999999999999954

>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family

Probab=86.94  E-value=5.8  Score=25.08  Aligned_cols=39  Identities=13%  Similarity=0.058  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         69 TIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        69 ~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      .....++.+.-.++.-+++.|+|....+..|..+...+.
T Consensus       135 ~~~l~~~sl~~~~l~l~ls~~~g~~~si~ig~~g~l~~~  173 (248)
T TIGR03733       135 ALLLIIGSLFLYIIHLFVSFAFGMGASIGIGIVGTLMAA  173 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            333445556666666789999998777667665554433

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=86.85  E-value=8.8  Score=27.02  Aligned_cols=36  Identities=28%  Similarity=0.197  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792         68 TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM  103 (116)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~  103 (116)
                      .....++..++..++.+++.+|+|.+......-+..
T Consensus       308 ~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~  343 (472)
T TIGR00769       308 FSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVM  343 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344445566666666799999999887766554433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=86.30  E-value=8.9  Score=26.53  Aligned_cols=83  Identities=8%  Similarity=0.097  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhh-cCCCcchhHHHHHH-HHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792         26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFES-SGLSEKTAKFTTIG-IGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM  103 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~  103 (116)
                      +++..+.+...++.++-.  .-.|..|++.+. .|++..+..--... ..=..++..++...+.|.+|.|++++.+.+..
T Consensus         4 ~~~~~llc~~gf~~~frP--sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~   81 (412)
T PF01770_consen    4 KKITLLLCLFGFFKEFRP--SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSY   81 (412)
T ss_pred             hHHHHHHHHHHHHHhcCC--CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            344555454445444332  223455666654 67777654322111 12234556677889999999999999887776


Q ss_pred             HHHHHHH
Q psy17792        104 FIFSIFI  110 (116)
Q Consensus       104 ~~~~~~~  110 (116)
                      .+...++
T Consensus        82 i~t~~ll   88 (412)
T PF01770_consen   82 IITWLLL   88 (412)
T ss_pred             HHHHHHH
Confidence            6555444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG4830|consensus

Probab=85.78  E-value=1.6  Score=28.59  Aligned_cols=45  Identities=20%  Similarity=0.184  Sum_probs=31.2

Q ss_pred             HHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH---------HHhhhcccchhH
Q psy17792         51 STALFESSGLSEKTAKFTTIGIGAVMVTMTIIS---------IPLMDRMGRRTL   95 (116)
Q Consensus        51 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~dr~grr~~   95 (116)
                      +-.++++.|.++......+....+...+.+++.         .+..||+|||+.
T Consensus        40 lllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~   93 (412)
T KOG4830|consen   40 LLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS   93 (412)
T ss_pred             HHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence            344556778887766666776667766666665         456899999874

>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=85.25  E-value=2.3  Score=18.86  Aligned_cols=29  Identities=17%  Similarity=0.172  Sum_probs=15.7

Q ss_pred             hhcccchhHHhhhhHHHHHHHHHHHHHHc
Q psy17792         87 MDRMGRRTLHLYGLGGMFIFSIFITISLL  115 (116)
Q Consensus        87 ~dr~grr~~~~~~~~~~~~~~~~~~~~~~  115 (116)
                      +|.-||-+..+++.+........+++.+|
T Consensus         2 ~~ttGRIPLWlVgtv~G~~vi~lvglFfY   30 (40)
T PF01788_consen    2 ANTTGRIPLWLVGTVAGIAVIGLVGLFFY   30 (40)
T ss_dssp             ---TTSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccchHHHHHHHHHHHHHHHHhee
Confidence            35567888777776665555555555543

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....

>KOG2325|consensus

Probab=82.99  E-value=8  Score=27.36  Aligned_cols=81  Identities=15%  Similarity=0.175  Sum_probs=36.2

Q ss_pred             hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHH----HHHHHHHHHHHHHhh-hcccchhHHhhhh
Q psy17792         26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGI----GAVMVTMTIISIPLM-DRMGRRTLHLYGL  100 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~l~-dr~grr~~~~~~~  100 (116)
                      +...+.++...+.........-.-+.+......+.+..++-..+...    ++......+...+.. -++.+|..+..++
T Consensus       261 ~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~  340 (488)
T KOG2325|consen  261 WVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGF  340 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehH
Confidence            33444444444444444444344455555555666665544443333    222222223333332 3444555555554


Q ss_pred             HHHHHH
Q psy17792        101 GGMFIF  106 (116)
Q Consensus       101 ~~~~~~  106 (116)
                      +....+
T Consensus       341 l~~f~~  346 (488)
T KOG2325|consen  341 LIFFLS  346 (488)
T ss_pred             HHHHHh
Confidence            444333

>KOG3762|consensus

Probab=81.89  E-value=6.3  Score=28.47  Aligned_cols=66  Identities=15%  Similarity=0.136  Sum_probs=45.4

Q ss_pred             hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      .+.+++=--+++.+..+.-.+...+...++-++.-++.+++.+|+|+-+++..++.+.+.=.....
T Consensus       389 lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S  454 (618)
T KOG3762|consen  389 LVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS  454 (618)
T ss_pred             HHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH
Confidence            344444344566665555555666666777788888899999999999999888776665444433

>KOG3098|consensus

Probab=81.29  E-value=16  Score=25.70  Aligned_cols=44  Identities=27%  Similarity=0.215  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh---hcccchhHHhhhhHHHHHHHHHH
Q psy17792         67 FTTIGIGAVMVTMTIISIPLM---DRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~l~---dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      ..+...+++...+....+.+.   +++||++.+..+..+-.+..+++
T Consensus       283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li  329 (461)
T KOG3098|consen  283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLI  329 (461)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHH
Confidence            445555666777777666665   56788888887776665555444

>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family

Probab=81.20  E-value=11  Score=23.79  Aligned_cols=33  Identities=15%  Similarity=-0.100  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792         71 GIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM  103 (116)
Q Consensus        71 ~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~  103 (116)
                      ...++...-.++.-+++.|+|.-..+..+....
T Consensus       131 ~~~i~sl~~i~l~l~ls~~~g~~~si~ig~~~~  163 (241)
T TIGR03732       131 LIWLTSLWQIPLCLFLARKFGMFVSILVNLVLG  163 (241)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444455667888887555555555433

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.

>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative

Probab=80.99  E-value=7.1  Score=21.32  Aligned_cols=31  Identities=6%  Similarity=-0.185  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         76 MVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        76 ~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      .++|..++-|+-++++-++.+...+++.+++
T Consensus        56 il~G~~lG~WLD~~~~t~~~~tl~~lllGv~   86 (100)
T TIGR02230        56 TLLGVAVGIWLDRHYPSPFSWTLTMLIVGVV   86 (100)
T ss_pred             HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence            4445555556666777655554444444433

This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=80.50  E-value=17  Score=25.52  Aligned_cols=39  Identities=15%  Similarity=0.130  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792         67 FTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI  105 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~  105 (116)
                      ......+++..++.++.|++.|++|.|..+........+
T Consensus       154 ~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        154 MYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            445667888899999999999999999887765544333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	116
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		3e-10

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 29  LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD 88
           ++IG+++ + QQF GIN V YY+  +F++ G S   A   TI +G + +T T+++I  +D
Sbjct: 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD 337
Query: 89  RMGRRTLHLYGLGGM 103
           + GR+ L + G  GM
Sbjct: 338 KFGRKPLQIIGALGM 352

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.22
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.21
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.08
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.08
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.0
2xut_A	524	Proton/peptide symporter family protein; transport	98.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.92
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.89
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.87
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.73
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.46
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.83
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.62
2g9p_A	26	Antimicrobial peptide latarcin 2A; helix-hinge-hel	87.45

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.22  E-value=1.1e-10  Score=76.36  Aligned_cols=77  Identities=10%  Similarity=-0.081  Sum_probs=63.6

Q ss_pred             HHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792         34 VMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~  110 (116)
                      ...++.............|.+.+++|.+..+.++......++..++.++.|+++||+|||++++.+.++.++..+..
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~  108 (438)
T 3o7q_A           32 CSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF  108 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            33344344444566777888999999999999999999999999999999999999999999999888887776665

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.21  E-value=3.4e-10  Score=75.07  Aligned_cols=86  Identities=34%  Similarity=0.602  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792         27 KPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF  106 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~  106 (116)
                      ++.........+.+..+.+...+|.|++.+..+.+..+.........+...++.++++++.||+|||+.++.+..++.++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~  355 (491)
T 4gc0_A          276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG  355 (491)
T ss_dssp             THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHH
Confidence            34556677778888999999999999999999988888778888889999999999999999999999998888777766


Q ss_pred             HHHHHH
Q psy17792        107 SIFITI  112 (116)
Q Consensus       107 ~~~~~~  112 (116)
                      .+.++.
T Consensus       356 ~~~l~~  361 (491)
T 4gc0_A          356 MFSLGT  361 (491)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.08  E-value=3.5e-10  Score=74.10  Aligned_cols=84  Identities=18%  Similarity=0.163  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792         28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS  107 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~  107 (116)
                      +.+.......+...........+.|.+.++. .+..+.++......++..++.++.|+++||+|||+++..+.++.++..
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~  106 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM  106 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            3344444444444444455667788888888 899999999999999999999999999999999999999988888877


Q ss_pred             HHHHH
Q psy17792        108 IFITI  112 (116)
Q Consensus       108 ~~~~~  112 (116)
                      +..++
T Consensus       107 ~~~~~  111 (451)
T 1pw4_A          107 LFMGF  111 (451)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            76665

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.08  E-value=5.2e-10  Score=73.12  Aligned_cols=92  Identities=14%  Similarity=0.084  Sum_probs=62.5

Q ss_pred             chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHH-Hhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792         14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTAL-FES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG   91 (116)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g   91 (116)
                      .+++++++++..+...    ...++. .........+.|.+ .++ .|.+..+.........++..++.++.++++||+|
T Consensus       249 ~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~  323 (438)
T 3o7q_A          249 ASLSRLARIRHWRWAV----LAQFCY-VGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFA  323 (438)
T ss_dssp             HHHHHHTTCSHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hhHHHHHhChHHHHHH----HHHHHH-HHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3466777766444322    111222 22223344455555 555 5999988888899999999999999999999999


Q ss_pred             chhHHhhhhHHHHHHHHHH
Q psy17792         92 RRTLHLYGLGGMFIFSIFI  110 (116)
Q Consensus        92 rr~~~~~~~~~~~~~~~~~  110 (116)
                      ||+++..+.++..+..+.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~  342 (438)
T 3o7q_A          324 PHKVLAAYALIAMALCLIS  342 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHH
Confidence            9999888777666555443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.00  E-value=3.6e-09  Score=70.25  Aligned_cols=84  Identities=14%  Similarity=0.084  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhhchhhhHHhHHHHHhh-----cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc-ccchhHHhhhhHH
Q psy17792         29 LIIGIVMQLSQQFSGINAVFYYSTALFES-----SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRTLHLYGLGG  102 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~~~~~~~~  102 (116)
                      ........++.....+....+..+++.++     +|.+..+..+......++..++.++.|+++|| +|||+++..+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~   94 (491)
T 4aps_A           15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL   94 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            33333444444444444445555666666     89999999999999999999999999999999 8999999998888


Q ss_pred             HHHHHHHHHH
Q psy17792        103 MFIFSIFITI  112 (116)
Q Consensus       103 ~~~~~~~~~~  112 (116)
                      ..+..+..+.
T Consensus        95 ~~~~~~~~~~  104 (491)
T 4aps_A           95 IMLGHIVLAL  104 (491)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHHH
Confidence            7777665543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.93  E-value=6e-09  Score=69.74  Aligned_cols=77  Identities=16%  Similarity=0.049  Sum_probs=59.1

Q ss_pred             HHHHHhhchhhhHHhHHHHHhhcC------CCcchhHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHhhhhHHHHHHHH
Q psy17792         36 QLSQQFSGINAVFYYSTALFESSG------LSEKTAKFTTIGIGAVMVTMTIISIPLMDRM-GRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~~  108 (116)
                      .++.....+....+..+++.+++|      .+..+..+......++..++.++.|+++||+ |||+++..+.++..+..+
T Consensus        21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~  100 (524)
T 2xut_A           21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA  100 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            334344443444555556667788      8999999999999999999999999999999 999999888877776665


Q ss_pred             HHHH
Q psy17792        109 FITI  112 (116)
Q Consensus       109 ~~~~  112 (116)
                      ..+.
T Consensus       101 ~~~~  104 (524)
T 2xut_A          101 FLAI  104 (524)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.92  E-value=9.6e-09  Score=66.05  Aligned_cols=71  Identities=13%  Similarity=0.121  Sum_probs=58.9

Q ss_pred             hchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         42 SGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        42 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ..........|.+.+++|.+..+..+......+...++.++.|+++||+|||+++..+.....+.......
T Consensus        14 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   84 (375)
T 2gfp_A           14 MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT   84 (375)
T ss_dssp             HHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence            33445556678888899999999999999999999999999999999999999999888777766655543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.89  E-value=5e-09  Score=68.61  Aligned_cols=58  Identities=19%  Similarity=0.249  Sum_probs=47.3

Q ss_pred             hhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792         46 AVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM  103 (116)
Q Consensus        46 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~  103 (116)
                      ....+.|..+ ++.|.+..+.+.......++..++.++.|+++||+|||++++.+..+.
T Consensus        25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~   83 (417)
T 2cfq_A           25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM   83 (417)
T ss_dssp             HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3334455544 558999999999999999999999999999999999999988766544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.87  E-value=1.8e-08  Score=66.03  Aligned_cols=64  Identities=8%  Similarity=0.044  Sum_probs=51.1

Q ss_pred             hhchhhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc--cchhHHhhhhHHHH
Q psy17792         41 FSGINAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM--GRRTLHLYGLGGMF  104 (116)
Q Consensus        41 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~~~~~~~~~~  104 (116)
                      .........+.|.+.++ .|.+..+.........++..++.++.+++.||+  |||+.+..+..+..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          265 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            33444556667777766 899998888888999999999999999999999  99998876655544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.73  E-value=3.6e-08  Score=65.39  Aligned_cols=47  Identities=15%  Similarity=-0.000  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         65 AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      .++......++..+|++++|+++||+|||+++..+.++..++.+..+
T Consensus        57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a  103 (491)
T 4gc0_A           57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSA  103 (491)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            34566677888999999999999999999999998888777766554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.46  E-value=1.2e-07  Score=62.05  Aligned_cols=43  Identities=14%  Similarity=0.124  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792         66 KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI  108 (116)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~  108 (116)
                      ........+...++.++.++++||+|||+++..+..+.++...
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~  304 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII  304 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence            4455556677788899999999999999988877666555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.83  E-value=1.9e-06  Score=55.33  Aligned_cols=75  Identities=20%  Similarity=0.084  Sum_probs=47.8

Q ss_pred             chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy17792         14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR   92 (116)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr   92 (116)
                      .++++.++++..+.     ..+..+...........+.|.+.++ .|.+..+.........++..++.++.+++.||.||
T Consensus       190 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          190 TSYKTLFGNSGFNC-----YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             TCSTHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHhcCcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666543332     1112222222333444455555544 78887788888888889999999999999999987


Q ss_pred             h
Q psy17792         93 R   93 (116)
Q Consensus        93 r   93 (116)
                      +
T Consensus       265 ~  265 (375)
T 2gfp_A          265 L  265 (375)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.62  E-value=0.00014  Score=48.17  Aligned_cols=49  Identities=6%  Similarity=-0.190  Sum_probs=33.6

Q ss_pred             HhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh
Q psy17792         49 YYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL   97 (116)
Q Consensus        49 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~   97 (116)
                      .+.|.+.+ ..+.+..+.........+...++.++.+++.||+|||+...
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~  353 (491)
T 4aps_A          304 VVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS  353 (491)
T ss_dssp             THHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C
T ss_pred             HHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc
Confidence            33444444 45666455666677778888889999999999999986554

>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}

Probab=87.45  E-value=0.27  Score=18.34  Aligned_cols=14  Identities=21%  Similarity=0.562  Sum_probs=11.2

Q ss_pred             HHHHhhhcccchhH
Q psy17792         82 ISIPLMDRMGRRTL   95 (116)
Q Consensus        82 ~~~~l~dr~grr~~   95 (116)
                      ++|.+..++|||.+
T Consensus         2 lfgklikkfgrkai   15 (26)
T 2g9p_A            2 LFGKLIKKFGRKAI   15 (26)
T ss_dssp             HHHHHHHHHTSHHH
T ss_pred             cHHHHHHHHhHHHH
Confidence            36788999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	116
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.11
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.11
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.47
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.22

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2.2e-10  Score=71.78  Aligned_cols=67  Identities=18%  Similarity=0.222  Sum_probs=53.2

Q ss_pred             hhhHHhHHH-HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         45 NAVFYYSTA-LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        45 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      .....+.|. +.++.|.+..+.++......+...++.++.|+++||+|||++++.+..+..++.....
T Consensus        24 ~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~   91 (417)
T d1pv7a_          24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF   91 (417)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            344444554 4556899999999999999999999999999999999999999887766665554443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2.2e-10  Score=73.14  Aligned_cols=66  Identities=20%  Similarity=0.135  Sum_probs=55.4

Q ss_pred             hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792         46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI  112 (116)
Q Consensus        46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~  112 (116)
                      ......|++ ++.|.+..+.++......++..++.+++|+++||+|||+++..+.++.+++.+..+.
T Consensus        43 ~~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~  108 (447)
T d1pw4a_          43 NFALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGF  108 (447)
T ss_dssp             SHHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccc
Confidence            345556765 468999999999999999999999999999999999999999988877776666544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=7.3e-07  Score=56.50  Aligned_cols=53  Identities=9%  Similarity=0.056  Sum_probs=41.3

Q ss_pred             hhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh
Q psy17792         45 NAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL   97 (116)
Q Consensus        45 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~   97 (116)
                      .....+.|.++ +..+.+..+.........+...++.++.+++.||++||+...
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  319 (447)
T d1pw4a_         266 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA  319 (447)
T ss_dssp             HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             hcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccc
Confidence            34444455544 457888888888889999999999999999999999876443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=9.6e-07  Score=54.83  Aligned_cols=48  Identities=13%  Similarity=0.057  Sum_probs=37.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792         64 TAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT  111 (116)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~  111 (116)
                      ..........+...++..+.+++.||.|||+.+..+..+..+....+.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~  307 (417)
T d1pv7a_         260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS  307 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccc
Confidence            344556666778888899999999999999999888777766655443