Psyllid ID: psy17795
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 523 | 2.2.26 [Sep-21-2011] | |||||||
| Q6GMK8 | 422 | Mannose-1-phosphate guany | yes | N/A | 0.760 | 0.943 | 0.496 | 1e-114 | |
| Q0VFM6 | 421 | Mannose-1-phosphate guany | yes | N/A | 0.762 | 0.947 | 0.503 | 1e-112 | |
| Q66KG5 | 426 | Mannose-1-phosphate guany | N/A | N/A | 0.772 | 0.948 | 0.503 | 1e-112 | |
| Q7SXP8 | 422 | Mannose-1-phosphate guany | no | N/A | 0.768 | 0.952 | 0.494 | 1e-111 | |
| Q6DKE9 | 421 | Mannose-1-phosphate guany | N/A | N/A | 0.766 | 0.952 | 0.505 | 1e-110 | |
| Q5XIC1 | 420 | Mannose-1-phosphate guany | yes | N/A | 0.760 | 0.947 | 0.473 | 1e-104 | |
| B0CM52 | 420 | Mannose-1-phosphate guany | N/A | N/A | 0.768 | 0.957 | 0.466 | 1e-103 | |
| Q922H4 | 420 | Mannose-1-phosphate guany | yes | N/A | 0.764 | 0.952 | 0.468 | 1e-103 | |
| Q96IJ6 | 420 | Mannose-1-phosphate guany | yes | N/A | 0.768 | 0.957 | 0.466 | 1e-103 | |
| Q86HG0 | 412 | Mannose-1-phosphate guany | yes | N/A | 0.741 | 0.941 | 0.369 | 6e-72 |
| >sp|Q6GMK8|GMPAA_DANRE Mannose-1-phosphate guanyltransferase alpha-A OS=Danio rerio GN=gmppaa PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/437 (49%), Positives = 294/437 (67%), Gaps = 39/437 (8%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PM+QHHIEAC ++PN+KEI+++G+Y P+ +L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACSKLPNMKEILLIGFYQPNEELNRFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFT 218
Q++KI+IRYLQE Y + GIY R+ + +F
Sbjct: 70 SCAQQDFKISIRYLQE-----------------YAALGTGGGIYHFRDQILSGGPDAFFV 112
Query: 219 L------EIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEK 272
+ E ++ + ++ T A R+QS+ YGCIV +QT E+ HYVEK
Sbjct: 113 MNADVCSEFPLPEMLDFQKEHGDTYSFVILGTTANRKQSLNYGCIVENEQTDEVLHYVEK 172
Query: 273 PSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNH----IQLEK 328
P TFVS ++NCG+YLF+ +IFQ+I +VFQ Q E M+ + ++ H I+LE+
Sbjct: 173 PGTFVSDIINCGIYLFTPEIFQHIGSVFQKNQQE------MLLEEQSNGWHRAEVIRLEQ 226
Query: 329 EIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQ--CKTI 386
+I LAG GK YVY+T ++WSQ+KSAGSAIYA+R YL Y HPERL +++ KT
Sbjct: 227 DIFTALAGQGKLYVYKTDRFWSQIKSAGSAIYASRLYLNQYHKTHPERLATNTEGGAKTR 286
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
G+VYIH +A++ PTA++GPNVSI G IG GVR++ESIIL GA++ +HS VLNSIVG
Sbjct: 287 GNVYIHPTANIDPTAVLGPNVSIGTGVTIGAGVRVRESIILHGATLQDHSCVLNSIVGWE 346
Query: 447 SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSI 506
S +G W+RVEGTP DPNPN +AK+D+ LF +GKL PSITILG V +P E+I+LNSI
Sbjct: 347 STIGKWARVEGTPSDPNPNDPYAKIDSETLFR-DGKLTPSITILGCNVNIPSEVIILNSI 405
Query: 507 VLPYKELTRSFKNEILL 523
VLP+K+L RSFKN+I+L
Sbjct: 406 VLPHKDLNRSFKNQIIL 422
|
Danio rerio (taxid: 7955) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 3 |
| >sp|Q0VFM6|GMPPA_XENTR Mannose-1-phosphate guanyltransferase alpha OS=Xenopus tropicalis GN=gmppa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/435 (50%), Positives = 287/435 (65%), Gaps = 36/435 (8%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PM+QHHIEAC +VPNLKEI+++G+Y P+ L F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNEALSSFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFT 218
L QE+K+ IRYLQE Y + GIY R+ + +F
Sbjct: 70 LKAQQEFKVAIRYLQE-----------------YSALGTGGGIYHFRDQILSGGPQAFFV 112
Query: 219 LEIRSDV--------VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYV 270
+ +DV ++ H + + ++ T A R QS+ YGCIV +T E+ HYV
Sbjct: 113 MN--ADVCSAFPLVPMLDFHKQHGGSQSYVILGTTANRSQSLNYGCIVANGETQEVLHYV 170
Query: 271 EKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEI 330
EKP TFVS ++NCG+YLFS IFQ+IA VFQ Q E N I+LE+++
Sbjct: 171 EKPGTFVSDIINCGIYLFSPSIFQHIAEVFQRNQQEL---QLEENSSWQRTEVIRLEQDV 227
Query: 331 IMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQC-KTI-GD 388
LAG GK YVY+T WSQ+KSAGSAIYA+R YL Y + HPERL + + TI G+
Sbjct: 228 FTTLAGRGKLYVYKTEGCWSQIKSAGSAIYASRLYLSQYGSTHPERLASTKEGGPTIRGN 287
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSK 448
VYIH +A+V P+A++GPNVSI G +G GVRI+ESI+L GA + +HS VLN+IVG +S
Sbjct: 288 VYIHPTANVDPSAVLGPNVSIGMGVTVGAGVRIRESIVLHGAVLQDHSCVLNTIVGWDST 347
Query: 449 VGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVL 508
VG W+RVEGTP DPNPN ++K+D+ LF GKL PSITILG V++P E+++LNSIVL
Sbjct: 348 VGRWARVEGTPSDPNPNDPYSKIDSETLFR-EGKLTPSITILGCNVSIPAEVVILNSIVL 406
Query: 509 PYKELTRSFKNEILL 523
P+KEL+RSFKN+I+L
Sbjct: 407 PHKELSRSFKNQIIL 421
|
Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q66KG5|GMPAB_XENLA Mannose-1-phosphate guanyltransferase alpha-B OS=Xenopus laevis GN=gmppa-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/435 (50%), Positives = 289/435 (66%), Gaps = 31/435 (7%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PM+QHHIEAC +VPNLKEI+++G+Y P+ L F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNEALSSFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFT 218
L QE+K+ IRYLQE Y + GIY R+ + +F
Sbjct: 70 LKAQQEFKVAIRYLQE-----------------YSALGTGGGIYHFRDQILSGGPQAFFV 112
Query: 219 L--EIRSDVVIL----MHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEK 272
+ ++ S+ ++ H + + ++ T A R QS+ YGCIV T E+ HYVEK
Sbjct: 113 MNADVCSEFPLVPMLDFHKQHGGSQSYVILGTTANRTQSLNYGCIVSNGDTQEVLHYVEK 172
Query: 273 PSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEF--YNGNYMVNGKDTDFNHIQLEKEI 330
P TFVS ++NCG+YLFS IFQ+IA VFQ Q E ++ N I+LE+++
Sbjct: 173 PGTFVSDIINCGIYLFSPSIFQHIAEVFQRNQLELQLFSCISEENSSWQRTEVIRLEQDV 232
Query: 331 IMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQC-KTI-GD 388
LAG GK YVY+T WSQ+KSAGSAIYA+R YL Y T HPERL + + TI G+
Sbjct: 233 FTTLAGHGKLYVYKTEGCWSQIKSAGSAIYASRLYLSQYSTTHPERLASTKEGGPTIRGN 292
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSK 448
VYIH +A+V P+A++GPNVS+ G +G GVRI+ESIIL GA + +HS VLN+IVG +S
Sbjct: 293 VYIHPTANVDPSAVLGPNVSVGMGVTVGAGVRIRESIILHGAVLQDHSCVLNTIVGWDSM 352
Query: 449 VGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVL 508
VG W+RVEGTP DPNPN ++K+D+ LF GKL PSITILG V++P E+++LNSIVL
Sbjct: 353 VGRWARVEGTPSDPNPNDPYSKIDSETLFR-EGKLTPSITILGCNVSIPAEVVILNSIVL 411
Query: 509 PYKELTRSFKNEILL 523
P+KEL+RSFKN+I+L
Sbjct: 412 PHKELSRSFKNQIIL 426
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q7SXP8|GMPAB_DANRE Mannose-1-phosphate guanyltransferase alpha-B OS=Danio rerio GN=gmppab PE=2 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/433 (49%), Positives = 288/433 (66%), Gaps = 31/433 (7%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PM+QHHIEAC QVP++KEI+++G+Y P+ +L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACAQVPDMKEIMLIGFYQPNDELNRFI 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFT 218
QE+KI IRYLQEF + + GIY R+ + A +F
Sbjct: 70 YSAQQEFKIPIRYLQEFAAL-----------------GTGGGIYHFRDQILSGGPAAFFL 112
Query: 219 L--EIRSDVVIL----MHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEK 272
+ ++ S+ +L H + ++ T A R QS+ YGCIV +T+E+ H+VEK
Sbjct: 113 MNADVCSEFPLLEMLQFHRQHGENHCGVLLGTTANRTQSLNYGCIVENHETNEVLHFVEK 172
Query: 273 PSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIM 332
PSTFVS ++NCG+YLF+ DIF +I VFQ Q E + +G+ ++LE++I
Sbjct: 173 PSTFVSDIINCGIYLFTPDIFAHIGKVFQRNQQEKIQ-EELTHGRQMP-EVVRLEQDIFT 230
Query: 333 PLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCS--SQCKTIGDVY 390
LAG K +VY+T +WSQ+KSAGSAIYA+R YL+ Y HPERL + K GDVY
Sbjct: 231 ALAGQKKLFVYKTQHFWSQIKSAGSAIYASRLYLKQYHQTHPERLATNQGGTPKITGDVY 290
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
IH +A++ P+A++GPNVSI G IG GVR++ESIIL GA + +H VLNSIVG +S VG
Sbjct: 291 IHPTANIDPSAVLGPNVSIGKGVTIGGGVRVRESIILHGAVLQDHCCVLNSIVGWDSTVG 350
Query: 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPY 510
W+RVEGTP DPNPN +AK+D+ LF +G L PSITILG V +P E+I+ NSIVLP+
Sbjct: 351 KWARVEGTPSDPNPNDPYAKIDSETLFR-DGGLTPSITILGCNVNIPSEVIIRNSIVLPH 409
Query: 511 KELTRSFKNEILL 523
K+L RSFKN+I+L
Sbjct: 410 KDLNRSFKNQIIL 422
|
Danio rerio (taxid: 7955) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q6DKE9|GMPAA_XENLA Mannose-1-phosphate guanyltransferase alpha-A OS=Xenopus laevis GN=gmppa-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 219/433 (50%), Positives = 288/433 (66%), Gaps = 32/433 (7%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PM+QHHIEAC +VPNLKEI+++G+Y P+ L F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNEALNSFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFT 218
L QE+K+ IRYLQE Y + GIY R+ + +F
Sbjct: 70 LKAQQEFKVAIRYLQE-----------------YSALGTGGGIYHFRDQILSGGPQAFFV 112
Query: 219 L--EIRSDVVIL----MHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEK 272
+ ++ S+ ++ H + + ++ T A R QS+ YGCIV + T E+ HYVEK
Sbjct: 113 MNADVCSEFPLVSMLDFHKQHGGSQSYVILGTTANRTQSLNYGCIVANRDTQEVLHYVEK 172
Query: 273 PSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIM 332
P TFVS ++NCG+YLFS IFQ+IA VFQ Q E N I+LE+++
Sbjct: 173 PGTFVSDIINCGIYLFSPSIFQHIAEVFQQNQQELQL---EENSSWQRMEVIRLEQDVFS 229
Query: 333 PLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQC-KTI-GDVY 390
LAG GK YVY+T WSQ+KSAGSAIYA+R YL Y T HPERL + + TI G+VY
Sbjct: 230 TLAGRGKLYVYKTEGCWSQIKSAGSAIYASRLYLSQYGTTHPERLASTKEGGPTIRGNVY 289
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
IH +A+V P+A++GPNVSI G + GVRI+ESIIL GA + +HS VLN+IVG +S VG
Sbjct: 290 IHPTANVDPSAVLGPNVSIGMGVTVAAGVRIRESIILHGAVLQDHSCVLNTIVGWDSMVG 349
Query: 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPY 510
W+RVEGTP DPNPN ++K+D+ LF +GKL PSITILG V++P E+++LNSIVLP+
Sbjct: 350 RWARVEGTPSDPNPNDPYSKIDSETLFR-DGKLTPSITILGCNVSIPAEVVILNSIVLPH 408
Query: 511 KELTRSFKNEILL 523
KEL+RSFKN+I+L
Sbjct: 409 KELSRSFKNQIIL 421
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q5XIC1|GMPPA_RAT Mannose-1-phosphate guanyltransferase alpha OS=Rattus norvegicus GN=Gmppa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/435 (47%), Positives = 278/435 (63%), Gaps = 37/435 (8%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PMIQHHIEAC QVP ++EI+++G+Y P L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEALTQFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTL- 219
QE+ + +RYLQEF + T +R+ + +F L
Sbjct: 70 EAAQQEFNLPVRYLQEFTPL---------------GTGGGLYHFRDQILAGAPEAFFVLN 114
Query: 220 -EIRSD----VVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPS 274
++ SD ++ H L L+ + T A R QS+ YGCIV QT E+ HYVEKPS
Sbjct: 115 ADVCSDFPLSAMLDAHRLQRHPFLL--LGTTANRTQSLNYGCIVENPQTHEVLHYVEKPS 172
Query: 275 TFVSTLVNCGVYLFSLDIFQNIAAVFQSKQD----EFYNGNYMVNGKDTDFNHIQLEKEI 330
TF+S ++NCG+YLFS + + + VFQ Q E G++ G I+LE+++
Sbjct: 173 TFISDIINCGIYLFSPEALKPLRDVFQRNQQDGQLEESPGSWPGAGT------IRLEQDV 226
Query: 331 IMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERL--QCSSQCKTIGD 388
LAG G+ YV+ T WSQ+KSAGSA+YA+R YL Y+ HPERL + + G+
Sbjct: 227 FSALAGQGQIYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLARHTAGGPRIRGN 286
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSK 448
VYIH +A V P+A++GPNVSI G IG GVR++ESI+L GA++ H+ VL+SIVG S
Sbjct: 287 VYIHPTAKVAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGST 346
Query: 449 VGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVL 508
VG W+RVEGTP DPNPN A+MD+ LF +GKL P+ITILG V +P E+++LNSIVL
Sbjct: 347 VGRWARVEGTPNDPNPNDPRARMDSESLFK-DGKLLPAITILGCRVRIPAEVLILNSIVL 405
Query: 509 PYKELTRSFKNEILL 523
P+KEL+RSF N+I+L
Sbjct: 406 PHKELSRSFTNQIIL 420
|
Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|B0CM52|GMPPA_PAPAN Mannose-1-phosphate guanyltransferase alpha OS=Papio anubis GN=GMPPA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/431 (46%), Positives = 276/431 (64%), Gaps = 29/431 (6%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PMIQHHIEAC QVP ++EI+++G+Y P L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEPLTQFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTL- 219
QE+ + +RYLQEF + T +R+ + +F L
Sbjct: 70 EAAQQEFNLPVRYLQEFAPL---------------GTGGGLYHFRDQILAGSPEAFFVLN 114
Query: 220 -EIRSDVVI--LMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF 276
++ SD + ++ + ++ T A R QS+ YGCIV QT E+ HYVEKPSTF
Sbjct: 115 ADVCSDFPLSAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTF 174
Query: 277 VSTLVNCGVYLFSLDIFQNIAAVFQSKQD--EFYNGNYMVNGKDTDFNHIQLEKEIIMPL 334
+S ++NCG+YLFS + + + VFQ Q + + + G T I+LE+++ L
Sbjct: 175 ISDIINCGIYLFSPEALKPLRDVFQRNQQDGQLEDSPGLWPGAGT----IRLEQDVFSAL 230
Query: 335 AGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERL--QCSSQCKTIGDVYIH 392
AG G+ YV+ T WSQ+KSAGSA+YA+R YL Y+ HPERL + G+VYIH
Sbjct: 231 AGQGQIYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAKHTPGGPRIRGNVYIH 290
Query: 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNW 452
+A V P+A++GPNVSI G +G GVR++ESI+L GA++ H+ VL+SIVG S VG W
Sbjct: 291 PTAKVAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRW 350
Query: 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKE 512
+RVEGTP DPNPN A+MD+ LF +GKL P+ITILG V +P E+++LNSIVLP+KE
Sbjct: 351 ARVEGTPNDPNPNDPRARMDSESLFK-DGKLLPAITILGCRVRIPAEVLILNSIVLPHKE 409
Query: 513 LTRSFKNEILL 523
L+RSF N+I+L
Sbjct: 410 LSRSFTNQIIL 420
|
Papio anubis (taxid: 9555) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q922H4|GMPPA_MOUSE Mannose-1-phosphate guanyltransferase alpha OS=Mus musculus GN=Gmppa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 203/433 (46%), Positives = 276/433 (63%), Gaps = 33/433 (7%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PMIQHHIEAC QVP ++EI+++G+Y P L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEALTQFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTL- 219
QE+ + +RYLQEF + T +R+ + +F L
Sbjct: 70 EAAQQEFNLPVRYLQEFAPL---------------GTGGGLYHFRDQILAGAPEAFFVLN 114
Query: 220 -EIRSDVVI--LMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF 276
++ SD + ++ + ++ T A R QS+ YGCIV QT E+ HYVEKPSTF
Sbjct: 115 ADVCSDFPLSAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTF 174
Query: 277 VSTLVNCGVYLFSLDIFQNIAAVFQSKQD----EFYNGNYMVNGKDTDFNHIQLEKEIIM 332
+S ++NCG+YLFS + + + VFQ Q E G++ G I+LE+++
Sbjct: 175 ISDIINCGIYLFSPEALKPLRDVFQRNQQDGQLEESPGSWPGAGT------IRLEQDVFS 228
Query: 333 PLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERL--QCSSQCKTIGDVY 390
LAG G+ YV+ T WSQ+KSAGSA+YA+R YL Y+ HPERL + G+VY
Sbjct: 229 ALAGQGQIYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLARHTPGGPRIRGNVY 288
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
IH +A V P+A++GPNVSI G IG GVR++ESI+L GA++ H+ VL+SIVG S VG
Sbjct: 289 IHPTAKVAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVG 348
Query: 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPY 510
W+RVEGTP DPNPN A+MD+ LF +GKL P+ITILG V +P E+++LNSIVLP+
Sbjct: 349 RWARVEGTPNDPNPNDPRARMDSESLFK-DGKLLPAITILGCRVRIPAEVLILNSIVLPH 407
Query: 511 KELTRSFKNEILL 523
KEL+RSF N+I+L
Sbjct: 408 KELSRSFTNQIIL 420
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q96IJ6|GMPPA_HUMAN Mannose-1-phosphate guanyltransferase alpha OS=Homo sapiens GN=GMPPA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/431 (46%), Positives = 276/431 (64%), Gaps = 29/431 (6%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PMIQHHIEAC QVP ++EI+++G+Y P L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEPLTQFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTL- 219
QE+ + +RYLQEF + T +R+ + +F L
Sbjct: 70 EAAQQEFNLPVRYLQEFAPL---------------GTGGGLYHFRDQILAGSPEAFFVLN 114
Query: 220 -EIRSDVVI--LMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF 276
++ SD + ++ + ++ T A R QS+ YGCIV QT E+ HYVEKPSTF
Sbjct: 115 ADVCSDFPLSAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTF 174
Query: 277 VSTLVNCGVYLFSLDIFQNIAAVFQSKQD--EFYNGNYMVNGKDTDFNHIQLEKEIIMPL 334
+S ++NCG+YLFS + + + VFQ Q + + + G T I+LE+++ L
Sbjct: 175 ISDIINCGIYLFSPEALKPLRDVFQRNQQDGQLEDSPGLWPGAGT----IRLEQDVFSAL 230
Query: 335 AGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCK--TIGDVYIH 392
AG G+ YV+ T WSQ+KSAGSA+YA+R YL Y+ HPERL + G+VYIH
Sbjct: 231 AGQGQIYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAKHTPGGPWIRGNVYIH 290
Query: 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNW 452
+A V P+A++GPNVSI G +G GVR++ESI+L GA++ H+ VL+SIVG S VG W
Sbjct: 291 PTAKVAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRW 350
Query: 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKE 512
+RVEGTP DPNPN A+MD+ LF +GKL P+ITILG V +P E+++LNSIVLP+KE
Sbjct: 351 ARVEGTPSDPNPNDPRARMDSESLFK-DGKLLPAITILGCRVRIPAEVLILNSIVLPHKE 409
Query: 513 LTRSFKNEILL 523
L+RSF N+I+L
Sbjct: 410 LSRSFTNQIIL 420
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q86HG0|GMPPA_DICDI Mannose-1-phosphate guanyltransferase alpha OS=Dictyostelium discoideum GN=gmppA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (695), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 160/433 (36%), Positives = 233/433 (53%), Gaps = 45/433 (10%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL 161
GP KGTRFRPLSLD PK LFP+AG PMI HHIEAC +V N+KEII++G++ + L KF+
Sbjct: 14 GPSKGTRFRPLSLDVPKLLFPIAGKPMIYHHIEACSKVENMKEIILIGFFQESVLSKFIS 73
Query: 162 DMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEI 221
+ ++ + IRY+ E + + G+Y ++ +
Sbjct: 74 ETSKQLNVAIRYINE-----------------EKVLGTAGGLYHFRDIILEGGPSEIFVL 116
Query: 222 RSDV--------VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKP 273
SD+ ++ H + + T+M TE + YGC+VR ++T+E+ HY EKP
Sbjct: 117 HSDICCAFPLNDLLQFHKQHGRS--CTIMGTEIESAYANQYGCLVRDEKTAELLHYAEKP 174
Query: 274 STFVSTLVNCGVYLFSLDIFQNIAAV---FQSKQDEFYNGNYMVNGKDTDFNHIQLEKEI 330
TFVS L+NCGVY FS F I ++ + K D ++LE++I
Sbjct: 175 ETFVSNLINCGVYCFSPQFFDVIGKTMIDLKTSGQNITTDYPEITRKGFDVERLRLEQDI 234
Query: 331 IMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVY 390
+PLAG+G VY +W Q+K+AGS++Y YL + PE L+ + IG+V
Sbjct: 235 FVPLAGTGFISVYPYVGFWRQIKNAGSSVYCQELYLNHFAKTKPEVLKKGNN--IIGNVI 292
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
I S+ASV P+AI+GP+V I IG GVR+ SIIL I +H+ ++ SI+G S +G
Sbjct: 293 IDSTASVDPSAIIGPDVYIGPNVKIGKGVRVIHSIILDQTEIKDHACIIYSIIGWQSLIG 352
Query: 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPY 510
W+R+EG P + P S K +TI G G GE+IV N IV+P+
Sbjct: 353 VWARIEGIP------------NYTPFLYSQDK-RRGVTIFGAGAQANGEIIVSNCIVMPH 399
Query: 511 KELTRSFKNEILL 523
K+L R++ NEI+L
Sbjct: 400 KQLDRNYNNEIIL 412
|
Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 523 | ||||||
| 242011549 | 421 | glucose-1-phosphate adenylyltransferase, | 0.768 | 0.954 | 0.571 | 1e-136 | |
| 321477774 | 422 | hypothetical protein DAPPUDRAFT_191301 [ | 0.772 | 0.957 | 0.574 | 1e-135 | |
| 170049370 | 429 | mannose-1-phosphate guanyltransferase [C | 0.770 | 0.939 | 0.553 | 1e-134 | |
| 157130856 | 429 | mannose-1-phosphate guanyltransferase [A | 0.770 | 0.939 | 0.546 | 1e-134 | |
| 57909371 | 428 | AGAP011723-PA [Anopheles gambiae str. PE | 0.770 | 0.941 | 0.547 | 1e-133 | |
| 91094119 | 415 | PREDICTED: similar to AGAP011723-PA [Tri | 0.759 | 0.956 | 0.559 | 1e-133 | |
| 380012036 | 425 | PREDICTED: mannose-1-phosphate guanyltra | 0.776 | 0.955 | 0.563 | 1e-130 | |
| 307170931 | 419 | Mannose-1-phosphate guanyltransferase al | 0.772 | 0.964 | 0.563 | 1e-130 | |
| 380012034 | 420 | PREDICTED: mannose-1-phosphate guanyltra | 0.772 | 0.961 | 0.567 | 1e-129 | |
| 312373319 | 465 | hypothetical protein AND_17581 [Anophele | 0.764 | 0.860 | 0.543 | 1e-129 |
| >gi|242011549|ref|XP_002426511.1| glucose-1-phosphate adenylyltransferase, putative [Pediculus humanus corporis] gi|212510637|gb|EEB13773.1| glucose-1-phosphate adenylyltransferase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 247/432 (57%), Positives = 309/432 (71%), Gaps = 30/432 (6%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL 161
GPLKGTRFRPLSLD KPLF VAG P+IQHHIEAC+ + NLKEIIILGYYP+ + F+
Sbjct: 10 GPLKGTRFRPLSLDIAKPLFSVAGFPIIQHHIEACLSLSNLKEIIILGYYPANEFSTFIQ 69
Query: 162 DMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEI 221
+MVQEYKINIRYLQEF + T +R+ + +F L
Sbjct: 70 EMVQEYKINIRYLQEFTPL---------------GTAGGLYHFRDQIKIGNPKAFFVL-- 112
Query: 222 RSDV--------VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKP 273
DV ++ H L+ A L T++ TEATRQQS+ YGC+V + TSE++HYVEKP
Sbjct: 113 NGDVCMNFPLQELLDAHQLHEDA-LGTIVVTEATRQQSLNYGCVVLNKNTSEVAHYVEKP 171
Query: 274 STFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMP 333
TFVS L+NCGVY+FS+DIFQ + +F KQ F + + NG + + I LEKEI++P
Sbjct: 172 ETFVSPLINCGVYIFSVDIFQTMKEIFDKKQTSFCSN--LSNGNGNESSLINLEKEILLP 229
Query: 334 LAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERL--QCSSQCKTIGDVYI 391
+AG GK + Y+T KWWSQLK+AGSAIYANRHYL LY+ PERL + QC IGDV+I
Sbjct: 230 MAGIGKLFAYKTVKWWSQLKTAGSAIYANRHYLSLYQQSTPERLAENVNGQCTIIGDVFI 289
Query: 392 HSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGN 451
H +A+V +A++GPNVSI AV+GPGVRI+ESIIL GA + H L+L SI+G S++G
Sbjct: 290 HPTATVDQSAVLGPNVSIGKNAVVGPGVRIRESIILSGACLQEHCLILYSIIGCFSQIGK 349
Query: 452 WSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYK 511
W+RVEGTPCDPNPNK FAKMDNPPLFN++G+LNPSIT+LG VT+ E+IVLNSIVLP+K
Sbjct: 350 WARVEGTPCDPNPNKPFAKMDNPPLFNNDGRLNPSITVLGCNVTISSEIIVLNSIVLPHK 409
Query: 512 ELTRSFKNEILL 523
ELTR+FKNEI+L
Sbjct: 410 ELTRNFKNEIIL 421
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321477774|gb|EFX88732.1| hypothetical protein DAPPUDRAFT_191301 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/430 (57%), Positives = 309/430 (71%), Gaps = 26/430 (6%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL 161
G KGTRFRPLSLD PKPLF VAG P+IQHHIEACVQ+P LKEIIILGYY + ++ +FV
Sbjct: 11 GNQKGTRFRPLSLDLPKPLFAVAGFPIIQHHIEACVQIPFLKEIIILGYYGANEMSQFVG 70
Query: 162 DMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTL-- 219
+MVQ YK+NIRYLQEF + T +R+ + +F L
Sbjct: 71 EMVQLYKLNIRYLQEFEPL---------------GTAGGLYHFRDQIRCGNPDYFFVLNG 115
Query: 220 EIRSDVVIL----MHSLY--SMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKP 273
++ +D ++ H + +VT+MATEATRQQS+ YGCI+ ++ + + HYVEKP
Sbjct: 116 DVCADFPLIEMLEFHKTHREKQKAIVTLMATEATRQQSLIYGCIIENKENNTLEHYVEKP 175
Query: 274 STFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMP 333
STF+STLVNCGVY+FS ++FQ +A VF KQ +FYN + NG + + LEKEI+MP
Sbjct: 176 STFISTLVNCGVYIFSPEVFQQMANVFNKKQMDFYN---VENGSSVEREALYLEKEILMP 232
Query: 334 LAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHS 393
LAG+GKA +YQT KWWSQLK+ G+AIYANRHYL L++ R PERL S Q IGDVYIH
Sbjct: 233 LAGTGKALIYQTLKWWSQLKTPGAAIYANRHYLNLFRERRPERLAKSDQPTIIGDVYIHP 292
Query: 394 SASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWS 453
+A VHPTA++GPNVSI A I G RIKESI+L + + +HSLVL SI+G NS++G WS
Sbjct: 293 TADVHPTAVLGPNVSIGAHATISYGTRIKESIVLAHSRVLDHSLVLYSIIGANSEIGCWS 352
Query: 454 RVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKEL 513
RVEGTPCDPNP+K FAKM+N PLFN G+LNPSITILG+ VT+P E+IV NSIVLP+KEL
Sbjct: 353 RVEGTPCDPNPDKPFAKMENAPLFNDEGRLNPSITILGNNVTIPSEVIVRNSIVLPHKEL 412
Query: 514 TRSFKNEILL 523
TRS+ NEI+L
Sbjct: 413 TRSYNNEIIL 422
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170049370|ref|XP_001855817.1| mannose-1-phosphate guanyltransferase [Culex quinquefasciatus] gi|167871239|gb|EDS34622.1| mannose-1-phosphate guanyltransferase [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 243/439 (55%), Positives = 308/439 (70%), Gaps = 36/439 (8%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL 161
GP KGTRFRPLSLD+PKPLFPVAG P+IQHHIEACV++ LKEI+ILG+YP + +Q+FV
Sbjct: 10 GPEKGTRFRPLSLDTPKPLFPVAGKPIIQHHIEACVRIKELKEILILGFYPPSQMQQFVS 69
Query: 162 DMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEI 221
+M Y +NIRYL EF + T +R+ + + +F L
Sbjct: 70 NMQNLYDVNIRYLLEFTSL---------------GTAGGMYHFRDQIRSGNPSAFFVLNG 114
Query: 222 RSDVVILMHSLYSM------AILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST 275
+ LY LVT+M TEATRQQ+V+YGC+V + E++HYVEKP +
Sbjct: 115 DVCADFPLQQLYDFHAGKGDRALVTIMGTEATRQQAVHYGCLVLGK-NEEVTHYVEKPRS 173
Query: 276 FVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLA 335
+VSTL+NCGVY S++IF + AVF SKQ ++ N + NG D HIQ E+EI+ PLA
Sbjct: 174 YVSTLINCGVYCCSMEIFSRMGAVFHSKQLDY---NSLNNGNGKDSGHIQFEQEILTPLA 230
Query: 336 GSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQ-----------CK 384
G+GK + Q + WWSQ+K+AGSAIYANRHYL LYK HPERL + Q C
Sbjct: 231 GTGKMFALQVNNWWSQVKTAGSAIYANRHYLALYKNTHPERLANAGQKTSEHSQGSLICN 290
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVG 444
+ DV+IH +ASVHPTA +GPNVSI G VIGPGVRI+ESIIL+ A I +H+LVL+SIVG
Sbjct: 291 IVPDVHIHPTASVHPTATLGPNVSIGPGVVIGPGVRIRESIILENAVIKDHTLVLHSIVG 350
Query: 445 RNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504
R S++G W+RVEGTP DP+PNK FAKM+NPPLFN++G+LNPSITILG V+VP E+I+LN
Sbjct: 351 RGSQIGMWARVEGTPSDPDPNKPFAKMENPPLFNNDGRLNPSITILGYAVSVPSEMILLN 410
Query: 505 SIVLPYKELTRSFKNEILL 523
SIVLP+KEL+RSFKNEI+L
Sbjct: 411 SIVLPHKELSRSFKNEIIL 429
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157130856|ref|XP_001662032.1| mannose-1-phosphate guanyltransferase [Aedes aegypti] gi|94469014|gb|ABF18356.1| GDP-mannose pyrophosphorylase A [Aedes aegypti] gi|108871743|gb|EAT35968.1| AAEL011912-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 240/439 (54%), Positives = 309/439 (70%), Gaps = 36/439 (8%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL 161
GP KGTRFRPLSLD+PKPLFP+AG P+IQHH+EACV++ LKEI+ILG+YP++ +Q+FV
Sbjct: 10 GPEKGTRFRPLSLDTPKPLFPIAGKPVIQHHVEACVRIKELKEILILGFYPASQMQQFVS 69
Query: 162 DMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEI 221
+M Y +NIRYLQEF + T +R+ + + +F L
Sbjct: 70 NMQNLYDVNIRYLQEFTSL---------------GTAGGMYHFRDQIRSGNPSAFFVLNG 114
Query: 222 RSDVVILMHSLYSMAI------LVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST 275
+ LY + LV++M TEATRQQ+V+YGC+V E++HYVEKP T
Sbjct: 115 DVCADFPLQKLYDFHVSKGEKALVSIMGTEATRQQAVHYGCLVLGND-EEVTHYVEKPRT 173
Query: 276 FVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLA 335
+VSTL+NCGVY+ S+++F + VF SKQ ++ N + NG D HIQLE+EI+ PLA
Sbjct: 174 YVSTLINCGVYVCSMELFSRMGNVFHSKQLDY---NSLNNGNGKDLGHIQLEQEILTPLA 230
Query: 336 GSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERL-----------QCSSQCK 384
G+G Y S WWSQ+K+AGSAIYANRHYL LYK HPERL S C
Sbjct: 231 GTGLMYALPVSNWWSQIKTAGSAIYANRHYLALYKNTHPERLANAGLKTSENSNGSLVCN 290
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVG 444
I DV+IH +ASVHPTA +GPNVS+ G VIGPGVRI+ESIIL+ A I +H+LVL+SI+G
Sbjct: 291 IIPDVHIHPTASVHPTATLGPNVSVGPGVVIGPGVRIRESIILENAVIKDHTLVLHSIIG 350
Query: 445 RNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504
R+S++G W+RVEGTP DP+PNK FAKMDNPPLFN++G+LNPSITILG V+VP E+++LN
Sbjct: 351 RSSQIGMWARVEGTPSDPDPNKPFAKMDNPPLFNNDGRLNPSITILGYSVSVPSEMVLLN 410
Query: 505 SIVLPYKELTRSFKNEILL 523
SIVLP+KEL+RSFKNEI+L
Sbjct: 411 SIVLPHKELSRSFKNEIIL 429
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|57909371|ref|XP_552528.1| AGAP011723-PA [Anopheles gambiae str. PEST] gi|55234963|gb|EAL38887.1| AGAP011723-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/438 (54%), Positives = 307/438 (70%), Gaps = 35/438 (7%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL 161
GP KGTRFRPLSLD+PKPLFPVAG P+IQHH+E+CV++ LKEI+ILG+YP+ +Q+FV
Sbjct: 10 GPEKGTRFRPLSLDTPKPLFPVAGKPIIQHHVESCVRIKELKEILILGFYPATQMQQFVS 69
Query: 162 DMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEI 221
+M Y +NIRYLQEF + T +R+ + +F L
Sbjct: 70 NMQNLYDVNIRYLQEFTAL---------------GTAGGMYHFRDQIRSGNPGAFFVLNG 114
Query: 222 RSDVVILMHSLYSM------AILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST 275
+ LY LV++M TEATRQQ+V+YGC+V + E++HYVEKP +
Sbjct: 115 DVCADFPLQELYDFHRSKNEKALVSIMGTEATRQQAVHYGCLVLGKD-EEVTHYVEKPRS 173
Query: 276 FVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLA 335
++STL+NCGVY+ S+DIF + AVF SKQ ++ + + NG D HIQ E+EI+ PLA
Sbjct: 174 YLSTLINCGVYVCSMDIFAKMGAVFHSKQQDY---SMLNNGNGKDSGHIQWEQEILTPLA 230
Query: 336 GSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQ----------CKT 385
G+GK Y + WWSQ+K+AGSAIYANRHYL LYK HPERL + C
Sbjct: 231 GTGKLYALPVNNWWSQIKTAGSAIYANRHYLALYKNAHPERLASAGLKTENDNANLVCNI 290
Query: 386 IGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGR 445
+ DV+IH +ASVHPTA +GPNVSI G VIGPGVR++ESIIL+ A I +HSLVL+SIVGR
Sbjct: 291 VPDVHIHPTASVHPTATLGPNVSIGPGVVIGPGVRVRESIILENAVIKDHSLVLHSIVGR 350
Query: 446 NSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505
S++G W+RVEGTP DP+PNK FAKM+NPPLFN++G+LNPSITILG V+VP E+IVLNS
Sbjct: 351 GSQIGMWARVEGTPSDPDPNKPFAKMENPPLFNTDGRLNPSITILGYAVSVPSEMIVLNS 410
Query: 506 IVLPYKELTRSFKNEILL 523
IVLP+KEL+RSFKNEI+L
Sbjct: 411 IVLPHKELSRSFKNEIIL 428
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91094119|ref|XP_968179.1| PREDICTED: similar to AGAP011723-PA [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/431 (55%), Positives = 313/431 (72%), Gaps = 34/431 (7%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL 161
GP KGTRFRPLSLD PKPLFPVAGLP+IQHHIEACV VP LKEI+++G+YP+A +Q+FV
Sbjct: 10 GPQKGTRFRPLSLDIPKPLFPVAGLPVIQHHIEACVAVPELKEILLIGFYPAALIQQFVN 69
Query: 162 DMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTL-- 219
D+ +Y I I+YLQEF + T +R+ + + +F +
Sbjct: 70 DLQHKYNITIKYLQEFTAL---------------GTAGGLYHFRDQIRYGNPDAFFVMNG 114
Query: 220 EIRSDVVILMHSLYSMAI---LVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF 276
++ +D ++ + + LVT+M TEATRQQS++YGCIV + T E+SHYVEKPS++
Sbjct: 115 DVCADFPLVELYQFHKNLNNSLVTIMGTEATRQQSLHYGCIVLNKNTHEVSHYVEKPSSY 174
Query: 277 VSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAG 336
VSTL+NCG+Y+FSLDIF I VF +KQ + ++T F IQLE+EI+ PLAG
Sbjct: 175 VSTLINCGIYVFSLDIFTTIGDVFIAKQQD--------TSRETGF--IQLEQEILAPLAG 224
Query: 337 SGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQ----CSSQCKTIGDVYIH 392
+GK + Q +KWWSQLK+AGSAIYANRHYL+LYK++HPERL+ C DV+I
Sbjct: 225 TGKVFALQVNKWWSQLKTAGSAIYANRHYLELYKSKHPERLRQPHSGGDGCTIYPDVHID 284
Query: 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNW 452
+A +H +A++GPNVSI G VIGPGVRI+ESIIL A I + SL+L+SI+GRNS++G W
Sbjct: 285 PTAQIHGSAVIGPNVSIGSGVVIGPGVRIRESIILADAVINDRSLILHSIIGRNSRIGTW 344
Query: 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKE 512
+RVEGTP DP+PNKAFAKM+NPPLFN++G+LNPSITILG V+VP E I+LNSIVLP KE
Sbjct: 345 ARVEGTPSDPDPNKAFAKMENPPLFNNDGRLNPSITILGCFVSVPSETILLNSIVLPNKE 404
Query: 513 LTRSFKNEILL 523
L+RS KNEI+L
Sbjct: 405 LSRSIKNEIIL 415
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380012036|ref|XP_003690096.1| PREDICTED: mannose-1-phosphate guanyltransferase alpha-A-like isoform 2 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 243/431 (56%), Positives = 308/431 (71%), Gaps = 25/431 (5%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL 161
GP KGTRFRPLSLD PKPLFPVAGLP+IQHHIEAC +V NL EI+I+G Y ++DL +F+
Sbjct: 11 GPSKGTRFRPLSLDIPKPLFPVAGLPVIQHHIEACSKVDNLSEILIIGSYLASDLSQFIE 70
Query: 162 DMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRN----SLHWVQEAVYF 217
+M+ YKI IRYLQEF + + + R+ TY N + +QE V +
Sbjct: 71 EMISTYKITIRYLQEFTPL-GTAGGLYHFRDQIRSGGPTYFFVMNGDVCADFSLQEIVEY 129
Query: 218 TLEIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFV 277
E ++ L T+MATEATRQQS+ YGC+V ++ +++HYVEKPSTFV
Sbjct: 130 HKEKQA--------------LFTIMATEATRQQSLNYGCMVLDKE-GKVAHYVEKPSTFV 174
Query: 278 STLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNG---NYMVNGKDTDFNHIQLEKEIIMPL 334
STL+NCG+YL SLDIFQ +A F + Q++ ++ N NG D HI LE++I+M L
Sbjct: 175 STLINCGIYLASLDIFQTMADAFYAGQNQEFDCTLFNSQFNGNGKDPAHISLEQDILMRL 234
Query: 335 AGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCS--SQCKTIGDVYIH 392
AG+G+ + KWWSQ+K+AGSAIYANRHYL LYK +HP RL + C+ IGD+YIH
Sbjct: 235 AGTGRLFALPVLKWWSQVKTAGSAIYANRHYLALYKAKHPNRLASAVNGPCQIIGDIYIH 294
Query: 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNW 452
SASVHPTA++GPNVSI A+I GVRI+ESIIL A I HS+VL+SIVG++S +G W
Sbjct: 295 PSASVHPTAVLGPNVSIGPNAIIARGVRIRESIILANAHIQPHSIVLHSIVGKSSYIGEW 354
Query: 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKE 512
+R+EGTPCDPNP+K FAKM+N PLFN+NGKLNPSITILG V + E IVLNSIVLP+KE
Sbjct: 355 ARIEGTPCDPNPDKPFAKMENLPLFNTNGKLNPSITILGTSVRLAAEKIVLNSIVLPHKE 414
Query: 513 LTRSFKNEILL 523
LTR+FKNEI+L
Sbjct: 415 LTRNFKNEIIL 425
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307170931|gb|EFN63031.1| Mannose-1-phosphate guanyltransferase alpha [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 241/428 (56%), Positives = 301/428 (70%), Gaps = 24/428 (5%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL 161
GPLKGTRFRPLSLD PKPLFPVAGLPMIQHHIEAC +VP L EI+I+G Y DL +FV
Sbjct: 10 GPLKGTRFRPLSLDIPKPLFPVAGLPMIQHHIEACAKVPGLNEILIIGAYSKNDLAQFVR 69
Query: 162 DMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTL-- 219
+M Y I IRYLQEF + T +R+ + +F +
Sbjct: 70 EMSSTYGIIIRYLQEFTPL---------------GTAGGMYHFRDQIRSGSPMYFFVMNG 114
Query: 220 EIRSDVVI--LMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFV 277
++ +D + ++ S L+T+MATEATRQQS+ YGC+V ++ E++HYVEKPSTFV
Sbjct: 115 DVCADFPLQEMVDFHNSKQALLTIMATEATRQQSLNYGCMVLGKE-GEVAHYVEKPSTFV 173
Query: 278 STLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGS 337
STL+NCGVYL SL+IFQ +A VF + Q + + NG+D HI E++I+ LAGS
Sbjct: 174 STLINCGVYLASLEIFQTMADVFHANQQQEHIMQLCCNGRDPA--HISFEQDILTRLAGS 231
Query: 338 GKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQ--CKTIGDVYIHSSA 395
G+ + +WWSQ+K+AGSAIYANRHYL LYK +HP RL +S C IGDVYIHSSA
Sbjct: 232 GRLFAIPVLRWWSQVKTAGSAIYANRHYLALYKQKHPNRLASTSNDSCNIIGDVYIHSSA 291
Query: 396 SVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRV 455
+VHPT+I+GPNVSI IG GVRI+ESI+L A I HSL+L+SI+G + VG W+RV
Sbjct: 292 TVHPTSILGPNVSIGPNTTIGAGVRIRESIVLANAHIQAHSLILHSIIGTGTNVGEWARV 351
Query: 456 EGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTR 515
EGTPCDPNPNK FAKM+N PLFN NGKLNPSITILG V++ E I+LNSIVLP+KELTR
Sbjct: 352 EGTPCDPNPNKPFAKMENLPLFNVNGKLNPSITILGTSVSLAAEKILLNSIVLPHKELTR 411
Query: 516 SFKNEILL 523
++KNEI+L
Sbjct: 412 NYKNEIIL 419
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380012034|ref|XP_003690095.1| PREDICTED: mannose-1-phosphate guanyltransferase alpha-A-like isoform 1 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/428 (56%), Positives = 307/428 (71%), Gaps = 24/428 (5%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL 161
GP KGTRFRPLSLD PKPLFPVAGLP+IQHHIEAC +V NL EI+I+G Y ++DL +F+
Sbjct: 11 GPSKGTRFRPLSLDIPKPLFPVAGLPVIQHHIEACSKVDNLSEILIIGSYLASDLSQFIE 70
Query: 162 DMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRN----SLHWVQEAVYF 217
+M+ YKI IRYLQEF + + + R+ TY N + +QE V +
Sbjct: 71 EMISTYKITIRYLQEFTPL-GTAGGLYHFRDQIRSGGPTYFFVMNGDVCADFSLQEIVEY 129
Query: 218 TLEIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFV 277
E ++ L T+MATEATRQQS+ YGC+V ++ +++HYVEKPSTFV
Sbjct: 130 HKEKQA--------------LFTIMATEATRQQSLNYGCMVLDKE-GKVAHYVEKPSTFV 174
Query: 278 STLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGS 337
STL+NCG+YL SLDIFQ +A F + Q++ + NGKD HI LE++I+M LAG+
Sbjct: 175 STLINCGIYLASLDIFQTMADAFYAGQNQENFIQFNGNGKDPA--HISLEQDILMRLAGT 232
Query: 338 GKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCS--SQCKTIGDVYIHSSA 395
G+ + KWWSQ+K+AGSAIYANRHYL LYK +HP RL + C+ IGD+YIH SA
Sbjct: 233 GRLFALPVLKWWSQVKTAGSAIYANRHYLALYKAKHPNRLASAVNGPCQIIGDIYIHPSA 292
Query: 396 SVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRV 455
SVHPTA++GPNVSI A+I GVRI+ESIIL A I HS+VL+SIVG++S +G W+R+
Sbjct: 293 SVHPTAVLGPNVSIGPNAIIARGVRIRESIILANAHIQPHSIVLHSIVGKSSYIGEWARI 352
Query: 456 EGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTR 515
EGTPCDPNP+K FAKM+N PLFN+NGKLNPSITILG V + E IVLNSIVLP+KELTR
Sbjct: 353 EGTPCDPNPDKPFAKMENLPLFNTNGKLNPSITILGTSVRLAAEKIVLNSIVLPHKELTR 412
Query: 516 SFKNEILL 523
+FKNEI+L
Sbjct: 413 NFKNEIIL 420
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312373319|gb|EFR21081.1| hypothetical protein AND_17581 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/436 (54%), Positives = 302/436 (69%), Gaps = 36/436 (8%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
+GTRFRPLSLD+PKPLFPVAG P+IQHHIE+CVQ+ LKEI+ILG+YP++ +Q+FV +M
Sbjct: 49 QGTRFRPLSLDTPKPLFPVAGKPIIQHHIESCVQLKELKEILILGFYPASQMQQFVSNMQ 108
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRSD 224
Y +NIRYLQEF + T +R+ + + +F L
Sbjct: 109 NLYDVNIRYLQEFTAL---------------GTAGGMYHFRDQIRSGNPSAFFVLNGDVC 153
Query: 225 VVILMHSLYSM------AILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVS 278
+ +LY LV++M TEATRQQ+V YGC+V E++HYVEKP ++S
Sbjct: 154 ADFPLQALYDFHRTKGDRALVSIMGTEATRQQAVLYGCLVLGV-NEEVTHYVEKPRAYLS 212
Query: 279 TLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSG 338
TL+NCGVY+ SLDIF + +VF KQ ++ + + +G D HIQ E+EI+ PLAG+G
Sbjct: 213 TLINCGVYVCSLDIFARMGSVFHEKQQDY---SLLSSGNGKDSGHIQWEQEILTPLAGTG 269
Query: 339 KAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERL-----------QCSSQCKTIG 387
+ + + WWSQ+K+AGSAIYANRHYL LYK HPERL S C I
Sbjct: 270 RLFALPVNNWWSQIKTAGSAIYANRHYLALYKRAHPERLANVGVKESEHGNGSLVCNIIP 329
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
DV+IH +ASVHP+A +GPNVSI G VIGPGVRI+ESIIL+ A I +HSLVL+SIVGR S
Sbjct: 330 DVHIHPTASVHPSATLGPNVSIGPGVVIGPGVRIRESIILENAVIKDHSLVLHSIVGRGS 389
Query: 448 KVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIV 507
++G W+RVEGTP DP+PNK FAKM+NPPLFN +G+LNPSITILG V VP E+IVLNSIV
Sbjct: 390 QIGRWARVEGTPSDPDPNKPFAKMENPPLFNCDGRLNPSITILGYSVNVPSEMIVLNSIV 449
Query: 508 LPYKELTRSFKNEILL 523
LP+KEL+RSFKNEI+L
Sbjct: 450 LPHKELSRSFKNEIIL 465
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 523 | ||||||
| FB|FBgn0034035 | 438 | CG8207 [Drosophila melanogaste | 0.558 | 0.666 | 0.579 | 2e-117 | |
| ZFIN|ZDB-GENE-040704-37 | 422 | gmppaa "GDP-mannose pyrophosph | 0.783 | 0.971 | 0.517 | 2.5e-106 | |
| ZFIN|ZDB-GENE-040426-1550 | 422 | gmppab "GDP-mannose pyrophosph | 0.768 | 0.952 | 0.496 | 2.6e-102 | |
| UNIPROTKB|E1BEN4 | 420 | GMPPA "Uncharacterized protein | 0.764 | 0.952 | 0.478 | 8.7e-95 | |
| RGD|1560644 | 420 | Gmppa "GDP-mannose pyrophospho | 0.766 | 0.954 | 0.481 | 1.1e-94 | |
| UNIPROTKB|E2R1D1 | 420 | GMPPA "Uncharacterized protein | 0.768 | 0.957 | 0.475 | 6.1e-94 | |
| UNIPROTKB|Q96IJ6 | 420 | GMPPA "Mannose-1-phosphate gua | 0.768 | 0.957 | 0.470 | 6.1e-94 | |
| MGI|MGI:1916330 | 420 | Gmppa "GDP-mannose pyrophospho | 0.770 | 0.959 | 0.479 | 7.8e-94 | |
| UNIPROTKB|I3LUP1 | 419 | GMPPA "Uncharacterized protein | 0.774 | 0.966 | 0.480 | 7e-93 | |
| WB|WBGene00021628 | 401 | Y47D9A.1 [Caenorhabditis elega | 0.380 | 0.496 | 0.57 | 3e-89 |
| FB|FBgn0034035 CG8207 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 2.0e-117, Sum P(2) = 2.0e-117
Identities = 179/309 (57%), Positives = 226/309 (73%)
Query: 230 HSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFS 289
H + LVT+M+TEATRQQS++YGC+V + + +SHYVEKPS++VST +NCGVY+ S
Sbjct: 132 HEKRPASALVTIMSTEATRQQSLHYGCLVFDRSSGAVSHYVEKPSSYVSTFINCGVYVCS 191
Query: 290 LDIFQNIAAVFQSKQDE-----FYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQ 344
+DIF +A +F S+ E F NGN NG++ HI+ E+E++ PLAG+ K +
Sbjct: 192 MDIFTVLAQIFHSRGQEYSCQAFCNGNGNGNGREQ--GHIKWEQEVLTPLAGTDKLFAMP 249
Query: 345 TSKWWSQLKSAGSAIYANRHYLQLYKTRHPERL----------QCSSQCKTIGDVYIHSS 394
WWSQLK+AGSAIYANRHYL LYK HPERL S C DVY+H S
Sbjct: 250 VPNWWSQLKTAGSAIYANRHYLGLYKKTHPERLANVGIKRGEGDGSLICTVHPDVYVHPS 309
Query: 395 ASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSR 454
A+VH +A++GPNV+I G IGPGVRI+ESI+L+ A I +H+LVL+SIVGR S +G W+R
Sbjct: 310 ATVHHSAVLGPNVAIGPGVTIGPGVRIRESIVLEQAQILDHTLVLHSIVGRGSTIGAWAR 369
Query: 455 VEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELT 514
VEGTP DP+PNK FAKM+NPPLFN+ GKLNPSITILG V VP E I+LNSIVLP+KEL+
Sbjct: 370 VEGTPSDPDPNKPFAKMENPPLFNNEGKLNPSITILGCFVQVPAEKILLNSIVLPHKELS 429
Query: 515 RSFKNEILL 523
RSFKNEI+L
Sbjct: 430 RSFKNEIIL 438
|
|
| ZFIN|ZDB-GENE-040704-37 gmppaa "GDP-mannose pyrophosphorylase Aa" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 220/425 (51%), Positives = 290/425 (68%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PM+QHHIEAC ++PN+KEI+++G+Y P+ +L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACSKLPNMKEILLIGFYQPNEELNRFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLE 220
Q++KI+IRYLQE+ + +Y +R+ + G + F L
Sbjct: 70 SCAQQDFKISIRYLQEYAALGTGG---GIYH--FRDQILSGGPDAFFVMNADVCSEFPLP 124
Query: 221 IRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTL 280
D YS IL T A R+QS+ YGCIV +QT E+ HYVEKP TFVS +
Sbjct: 125 EMLDFQKEHGDTYSFVIL----GTTANRKQSLNYGCIVENEQTDEVLHYVEKPGTFVSDI 180
Query: 281 VNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKA 340
+NCG+YLF+ +IFQ+I +VFQ Q E NG I+LE++I LAG GK
Sbjct: 181 INCGIYLFTPEIFQHIGSVFQKNQQEMLLEEQS-NGWHRA-EVIRLEQDIFTALAGQGKL 238
Query: 341 YVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQ--CKTIGDVYIHSSASVH 398
YVY+T ++WSQ+KSAGSAIYA+R YL Y HPERL +++ KT G+VYIH +A++
Sbjct: 239 YVYKTDRFWSQIKSAGSAIYASRLYLNQYHKTHPERLATNTEGGAKTRGNVYIHPTANID 298
Query: 399 PTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458
PTA++GPNVSI G IG GVR++ESIIL GA++ +HS VLNSIVG S +G W+RVEGT
Sbjct: 299 PTAVLGPNVSIGTGVTIGAGVRVRESIILHGATLQDHSCVLNSIVGWESTIGKWARVEGT 358
Query: 459 PCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFK 518
P DPNPN +AK+D+ LF +GKL PSITILG V +P E+I+LNSIVLP+K+L RSFK
Sbjct: 359 PSDPNPNDPYAKIDSETLFR-DGKLTPSITILGCNVNIPSEVIILNSIVLPHKDLNRSFK 417
Query: 519 NEILL 523
N+I+L
Sbjct: 418 NQIIL 422
|
|
| ZFIN|ZDB-GENE-040426-1550 gmppab "GDP-mannose pyrophosphorylase Ab" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
Identities = 215/433 (49%), Positives = 287/433 (66%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PM+QHHIEAC QVP++KEI+++G+Y P+ +L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACAQVPDMKEIMLIGFYQPNDELNRFI 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFT 218
QE+KI IRYLQEF + T GIY R+ + A +F
Sbjct: 70 YSAQQEFKIPIRYLQEFAAL---------------GTGG--GIYHFRDQILSGGPAAFFL 112
Query: 219 L--EIRSDVVIL----MHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEK 272
+ ++ S+ +L H + ++ T A R QS+ YGCIV +T+E+ H+VEK
Sbjct: 113 MNADVCSEFPLLEMLQFHRQHGENHCGVLLGTTANRTQSLNYGCIVENHETNEVLHFVEK 172
Query: 273 PSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIM 332
PSTFVS ++NCG+YLF+ DIF +I VFQ Q E + +G+ ++LE++I
Sbjct: 173 PSTFVSDIINCGIYLFTPDIFAHIGKVFQRNQQEKIQEE-LTHGRQMP-EVVRLEQDIFT 230
Query: 333 PLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSS--QCKTIGDVY 390
LAG K +VY+T +WSQ+KSAGSAIYA+R YL+ Y HPERL + K GDVY
Sbjct: 231 ALAGQKKLFVYKTQHFWSQIKSAGSAIYASRLYLKQYHQTHPERLATNQGGTPKITGDVY 290
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
IH +A++ P+A++GPNVSI G IG GVR++ESIIL GA + +H VLNSIVG +S VG
Sbjct: 291 IHPTANIDPSAVLGPNVSIGKGVTIGGGVRVRESIILHGAVLQDHCCVLNSIVGWDSTVG 350
Query: 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPY 510
W+RVEGTP DPNPN +AK+D+ LF G L PSITILG V +P E+I+ NSIVLP+
Sbjct: 351 KWARVEGTPSDPNPNDPYAKIDSETLFRDGG-LTPSITILGCNVNIPSEVIIRNSIVLPH 409
Query: 511 KELTRSFKNEILL 523
K+L RSFKN+I+L
Sbjct: 410 KDLNRSFKNQIIL 422
|
|
| UNIPROTKB|E1BEN4 GMPPA "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 207/433 (47%), Positives = 281/433 (64%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PMIQHHIEAC QVP ++EI+++G+Y P L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEPLTRFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTL- 219
QE+ + IRYLQEF + T +R+ + +F L
Sbjct: 70 EAAQQEFNLPIRYLQEFAPL---------------GTGGGLYHFRDQILAGSPEAFFVLN 114
Query: 220 -EIRSD----VVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPS 274
++ SD ++ +H L+ + T A R QS+ YGCIV QT E+ HYVEKPS
Sbjct: 115 ADVCSDFPLSAMLDVHRHQPHPFLL--LGTTANRTQSLNYGCIVENPQTHEVLHYVEKPS 172
Query: 275 TFVSTLVNCGVYLFSLDIFQNIAAVFQ-SKQD-EFYNGNYMVNGKDTDFNHIQLEKEIIM 332
TFVS ++NCG+YLFS + + + VFQ ++QD + + + + G T I+LE+++
Sbjct: 173 TFVSDIINCGIYLFSPEALKPLRDVFQRNQQDGQLEDSSGLWPGAGT----IRLEQDVFS 228
Query: 333 PLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERL--QCSSQCKTIGDVY 390
LAG G+ YV+ T WSQ+KSAGSA+YA+R YL Y+ HPERL + G+VY
Sbjct: 229 ALAGQGQIYVHLTDGIWSQIKSAGSALYASRLYLSQYQLTHPERLAKHTPGGPRIRGNVY 288
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
IH +A V P+A++GPNVSI +G IG GVR++ESI+L GA++ H+ VL+SIVG S VG
Sbjct: 289 IHPTAKVAPSAVLGPNVSIGEGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVG 348
Query: 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPY 510
W+RVEGTP DPNPN A MD+ LF +GKL P+ITILG V +P E+++LNSIVLP+
Sbjct: 349 RWARVEGTPNDPNPNDPRAHMDSESLFK-DGKLLPAITILGCRVRIPAEVLILNSIVLPH 407
Query: 511 KELTRSFKNEILL 523
KEL+RSF N+I+L
Sbjct: 408 KELSRSFTNQIIL 420
|
|
| RGD|1560644 Gmppa "GDP-mannose pyrophosphorylase A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 208/432 (48%), Positives = 276/432 (63%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PMIQHHIEAC QVP ++EI+++G+Y P L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEALTQFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTL- 219
QE+ + +RYLQEF T Y L EA +F L
Sbjct: 70 EAAQQEFNLPVRYLQEF--------------TPLGTGGGLYHFRDQILAGAPEA-FFVLN 114
Query: 220 -EIRSD----VVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPS 274
++ SD ++ H L L+ + T A R QS+ YGCIV QT E+ HYVEKPS
Sbjct: 115 ADVCSDFPLSAMLDAHRLQRHPFLL--LGTTANRTQSLNYGCIVENPQTHEVLHYVEKPS 172
Query: 275 TFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVN-GKDTDFNHIQLEKEIIMP 333
TF+S ++NCG+YLFS + + + VFQ Q + G + G I+LE+++
Sbjct: 173 TFISDIINCGIYLFSPEALKPLRDVFQRNQQD---GQLEESPGSWPGAGTIRLEQDVFSA 229
Query: 334 LAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERL--QCSSQCKTIGDVYI 391
LAG G+ YV+ T WSQ+KSAGSA+YA+R YL Y+ HPERL + + G+VYI
Sbjct: 230 LAGQGQIYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLARHTAGGPRIRGNVYI 289
Query: 392 HSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGN 451
H +A V P+A++GPNVSI G IG GVR++ESI+L GA++ H+ VL+SIVG S VG
Sbjct: 290 HPTAKVAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGR 349
Query: 452 WSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYK 511
W+RVEGTP DPNPN A+MD+ LF +GKL P+ITILG V +P E+++LNSIVLP+K
Sbjct: 350 WARVEGTPNDPNPNDPRARMDSESLFK-DGKLLPAITILGCRVRIPAEVLILNSIVLPHK 408
Query: 512 ELTRSFKNEILL 523
EL+RSF N+I+L
Sbjct: 409 ELSRSFTNQIIL 420
|
|
| UNIPROTKB|E2R1D1 GMPPA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 205/431 (47%), Positives = 281/431 (65%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PMIQHHIEAC QVP ++EI+++G+Y P L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEALTRFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTL- 219
QE+ + +RYLQEF + L T +R+ + +F L
Sbjct: 70 EAAQQEFNLPVRYLQEF---------VPL------GTGGGLYHFRDQILAGGPEAFFVLN 114
Query: 220 -EIRSDVVI-LMHSLYS-MAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF 276
++ SD + M + Y ++ T A R QS+ YGCIV QT E+ HYVEKPSTF
Sbjct: 115 ADVCSDFPLSAMLAAYRRQPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTF 174
Query: 277 VSTLVNCGVYLFSLDIFQNIAAVFQ-SKQD-EFYNGNYMVNGKDTDFNHIQLEKEIIMPL 334
VS ++NCG+YLFS + + + VFQ ++QD + + + + G T I+LE+++ L
Sbjct: 175 VSDVINCGIYLFSPEALKPLRDVFQRNQQDGQLEDSSGLWPGAGT----IRLEQDVFSAL 230
Query: 335 AGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERL--QCSSQCKTIGDVYIH 392
AG G+ YV+ T WSQ+KSAGSA+YA+R YL Y+ HPERL + G+VYIH
Sbjct: 231 AGQGQIYVHLTDGIWSQIKSAGSALYASRLYLGQYQLTHPERLAKHTPGGPRIRGNVYIH 290
Query: 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNW 452
+A V P+A++GPNVSI +G +G GVR++ESI+L GA++ H+ VL++IVG S VG W
Sbjct: 291 PTAKVAPSAVLGPNVSIGEGVTVGEGVRLRESIVLHGATLQEHTCVLHTIVGWGSTVGRW 350
Query: 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKE 512
+RVEGTP DPNPN A MD+ LF +GKL P+ITILG V +P E+++LNSIVLP+KE
Sbjct: 351 ARVEGTPNDPNPNDPRAHMDSESLFK-DGKLLPAITILGCRVRIPAEVLILNSIVLPHKE 409
Query: 513 LTRSFKNEILL 523
L+RSF N+I+L
Sbjct: 410 LSRSFTNQIIL 420
|
|
| UNIPROTKB|Q96IJ6 GMPPA "Mannose-1-phosphate guanyltransferase alpha" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 203/431 (47%), Positives = 281/431 (65%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PMIQHHIEAC QVP ++EI+++G+Y P L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEPLTQFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTL- 219
QE+ + +RYLQEF + T +R+ + +F L
Sbjct: 70 EAAQQEFNLPVRYLQEFAPL---------------GTGGGLYHFRDQILAGSPEAFFVLN 114
Query: 220 -EIRSDVVI--LMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF 276
++ SD + ++ + ++ T A R QS+ YGCIV QT E+ HYVEKPSTF
Sbjct: 115 ADVCSDFPLSAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTF 174
Query: 277 VSTLVNCGVYLFSLDIFQNIAAVFQ-SKQD-EFYNGNYMVNGKDTDFNHIQLEKEIIMPL 334
+S ++NCG+YLFS + + + VFQ ++QD + + + G T I+LE+++ L
Sbjct: 175 ISDIINCGIYLFSPEALKPLRDVFQRNQQDGQLEDSPGLWPGAGT----IRLEQDVFSAL 230
Query: 335 AGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERL-QCSSQCKTI-GDVYIH 392
AG G+ YV+ T WSQ+KSAGSA+YA+R YL Y+ HPERL + + I G+VYIH
Sbjct: 231 AGQGQIYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAKHTPGGPWIRGNVYIH 290
Query: 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNW 452
+A V P+A++GPNVSI G +G GVR++ESI+L GA++ H+ VL+SIVG S VG W
Sbjct: 291 PTAKVAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRW 350
Query: 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKE 512
+RVEGTP DPNPN A+MD+ LF +GKL P+ITILG V +P E+++LNSIVLP+KE
Sbjct: 351 ARVEGTPSDPNPNDPRARMDSESLFK-DGKLLPAITILGCRVRIPAEVLILNSIVLPHKE 409
Query: 513 LTRSFKNEILL 523
L+RSF N+I+L
Sbjct: 410 LSRSFTNQIIL 420
|
|
| MGI|MGI:1916330 Gmppa "GDP-mannose pyrophosphorylase A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
Identities = 206/430 (47%), Positives = 278/430 (64%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PMIQHHIEAC QVP ++EI+++G+Y P L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEALTQFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTL- 219
QE+ + +RYLQEF + LY +R+ L EA +F L
Sbjct: 70 EAAQQEFNLPVRYLQEFAPLGTGG---GLYH--FRD---------QILAGAPEA-FFVLN 114
Query: 220 -EIRSDVVI--LMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF 276
++ SD + ++ + ++ T A R QS+ YGCIV QT E+ HYVEKPSTF
Sbjct: 115 ADVCSDFPLSAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTF 174
Query: 277 VSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVN-GKDTDFNHIQLEKEIIMPLA 335
+S ++NCG+YLFS + + + VFQ Q + G + G I+LE+++ LA
Sbjct: 175 ISDIINCGIYLFSPEALKPLRDVFQRNQQD---GQLEESPGSWPGAGTIRLEQDVFSALA 231
Query: 336 GSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERL--QCSSQCKTIGDVYIHS 393
G G+ YV+ T WSQ+KSAGSA+YA+R YL Y+ HPERL + G+VYIH
Sbjct: 232 GQGQIYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLARHTPGGPRIRGNVYIHP 291
Query: 394 SASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWS 453
+A V P+A++GPNVSI G IG GVR++ESI+L GA++ H+ VL+SIVG S VG W+
Sbjct: 292 TAKVAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWA 351
Query: 454 RVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKEL 513
RVEGTP DPNPN A+MD+ LF +GKL P+ITILG V +P E+++LNSIVLP+KEL
Sbjct: 352 RVEGTPNDPNPNDPRARMDSESLFK-DGKLLPAITILGCRVRIPAEVLILNSIVLPHKEL 410
Query: 514 TRSFKNEILL 523
+RSF N+I+L
Sbjct: 411 SRSFTNQIIL 420
|
|
| UNIPROTKB|I3LUP1 GMPPA "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 205/427 (48%), Positives = 271/427 (63%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFV 160
GP KGTRFRPLS + PKPLFPVAG+PMIQHHIEAC QVP ++EI+++G+Y P L +F+
Sbjct: 10 GPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEPLTRFL 69
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLE 220
QE+ + IRYLQEF + LY +R+ G + F L
Sbjct: 70 EAAQQEFNLPIRYLQEFAPLGTGG---GLYH--FRDQILAGGPEAFFVLNADVCSDFPLS 124
Query: 221 IRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTL 280
D H + +L T A R QS+ YGCIV QT E+ HYVEKPSTFVS +
Sbjct: 125 AMLDAH--RHRPHPFLLL----GTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDI 178
Query: 281 VNCGVYLFSLDIFQNIAAVFQSKQD--EFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSG 338
+NCG+YLFS + + FQ Q + + + + G T I+LE+++ LAG G
Sbjct: 179 INCGIYLFSPETLP-LGKFFQRYQQGGQLEDSSVLWPGAGT----IRLEQDVFAALAGQG 233
Query: 339 KAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERL--QCSSQCKTIGDVYIHSSAS 396
+ YV+ T WSQ+KSAGSA+YA+R YL Y+ HPERL + G+VYIH +A
Sbjct: 234 QIYVHLTDGIWSQIKSAGSALYASRLYLSQYQLTHPERLAKHTPGGPRIRGNVYIHPTAK 293
Query: 397 VHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE 456
V P+A++GPNVSI +G +G GVR++ESI+L GA++ H+ VL+SIVG S VG W+RVE
Sbjct: 294 VAPSAVLGPNVSIGEGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 353
Query: 457 GTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRS 516
GTP DPNPN A MD+ LF +GKL P+ITILG V +P E+++LNSIVLP+KEL+RS
Sbjct: 354 GTPNDPNPNDPRAHMDSESLFK-DGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRS 412
Query: 517 FKNEILL 523
F N+I+L
Sbjct: 413 FTNQIIL 419
|
|
| WB|WBGene00021628 Y47D9A.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
Identities = 114/200 (57%), Positives = 145/200 (72%)
Query: 324 IQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQC 383
I LE +++ LA SG Y T++WWSQ K+A + +YANRHYL+LYK R+ RL C +
Sbjct: 203 IWLETDVLPQLASSGNLYALHTTRWWSQTKTAAAVLYANRHYLRLYKRRYAARL-CKNGA 261
Query: 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIV 443
+ IGDV+I SA VHPTA +GPNVSI +VIG GVRIKESIIL A I ++ VL S++
Sbjct: 262 QIIGDVFIDPSAKVHPTAKIGPNVSIGPKSVIGKGVRIKESIILPEAVIEENACVLQSVI 321
Query: 444 GRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503
G S VG W+R+EG P +PNPN FAKMDN PLF +G+L PS+TILG V+V E I+L
Sbjct: 322 GWRSVVGMWARIEGIPLEPNPNLPFAKMDNKPLFLPDGRLTPSLTILGSDVSVAPETIIL 381
Query: 504 NSIVLPYKELTRSFKNEILL 523
N +VLPYKELT S+KN+I+L
Sbjct: 382 NCVVLPYKELTCSYKNQIIL 401
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q86HG0 | GMPPA_DICDI | 2, ., 7, ., 7, ., 1, 3 | 0.3695 | 0.7418 | 0.9417 | yes | N/A |
| Q922H4 | GMPPA_MOUSE | 2, ., 7, ., 7, ., 1, 3 | 0.4688 | 0.7648 | 0.9523 | yes | N/A |
| O60064 | YBB2_SCHPO | 2, ., 7, ., 7, ., 1, 3 | 0.3185 | 0.7629 | 0.9637 | yes | N/A |
| Q96IJ6 | GMPPA_HUMAN | 2, ., 7, ., 7, ., 1, 3 | 0.4663 | 0.7686 | 0.9571 | yes | N/A |
| Q6GMK8 | GMPAA_DANRE | 2, ., 7, ., 7, ., 1, 3 | 0.4965 | 0.7609 | 0.9431 | yes | N/A |
| Q0VFM6 | GMPPA_XENTR | 2, ., 7, ., 7, ., 1, 3 | 0.5034 | 0.7629 | 0.9477 | yes | N/A |
| Q5XIC1 | GMPPA_RAT | 2, ., 7, ., 7, ., 1, 3 | 0.4735 | 0.7609 | 0.9476 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 523 | |||
| cd06428 | 257 | cd06428, M1P_guanylylT_A_like_N, N-terminal domain | 1e-101 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 1e-41 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 6e-22 | |
| cd05824 | 80 | cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate | 2e-19 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 9e-16 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 2e-15 | |
| TIGR01173 | 451 | TIGR01173, glmU, UDP-N-acetylglucosamine diphospho | 7e-13 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 1e-12 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 2e-12 | |
| PRK00892 | 343 | PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco | 2e-12 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 3e-12 | |
| cd05636 | 163 | cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho | 8e-10 | |
| COG1044 | 338 | COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | 1e-09 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 1e-09 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 2e-09 | |
| cd05636 | 163 | cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho | 7e-09 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 8e-09 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 9e-09 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 1e-08 | |
| TIGR01853 | 324 | TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo | 9e-08 | |
| cd03353 | 193 | cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph | 1e-07 | |
| PRK05289 | 262 | PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr | 1e-07 | |
| cd03360 | 197 | cd03360, LbH_AT_putative, Putative Acyltransferase | 2e-07 | |
| pfam05486 | 76 | pfam05486, SRP9-21, Signal recognition particle 9 | 2e-07 | |
| cd03352 | 205 | cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl | 2e-07 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 4e-07 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 4e-07 | |
| cd04645 | 153 | cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra | 4e-07 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 5e-07 | |
| cd03351 | 254 | cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin | 5e-07 | |
| cd02523 | 229 | cd02523, PC_cytidylyltransferase, Phosphocholine c | 6e-07 | |
| cd00208 | 78 | cd00208, LbetaH, Left-handed parallel beta-Helix ( | 6e-07 | |
| cd03352 | 205 | cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl | 7e-07 | |
| cd03352 | 205 | cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl | 8e-07 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 1e-06 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 1e-06 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 2e-06 | |
| cd03353 | 193 | cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph | 3e-06 | |
| TIGR03570 | 193 | TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia | 5e-06 | |
| COG1044 | 338 | COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | 6e-06 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 6e-06 | |
| cd03360 | 197 | cd03360, LbH_AT_putative, Putative Acyltransferase | 9e-06 | |
| COG1043 | 260 | COG1043, LpxA, Acyl-[acyl carrier protein] | 1e-05 | |
| cd00710 | 167 | cd00710, LbH_gamma_CA, Gamma carbonic anhydrases ( | 1e-05 | |
| PRK14354 | 458 | PRK14354, glmU, bifunctional N-acetylglucosamine-1 | 1e-05 | |
| TIGR01852 | 254 | TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei | 2e-05 | |
| COG1044 | 338 | COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | 3e-05 | |
| COG0663 | 176 | COG0663, PaaY, Carbonic anhydrases/acetyltransfera | 3e-05 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 3e-05 | |
| cd04652 | 81 | cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, | 5e-05 | |
| pfam00132 | 36 | pfam00132, Hexapep, Bacterial transferase hexapept | 6e-05 | |
| cd04197 | 217 | cd04197, eIF-2B_epsilon_N, The N-terminal domain o | 7e-05 | |
| COG1044 | 338 | COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | 1e-04 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 2e-04 | |
| COG4750 | 231 | COG4750, LicC, CTP:phosphocholine cytidylyltransfe | 2e-04 | |
| TIGR01853 | 324 | TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo | 3e-04 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 3e-04 | |
| cd00710 | 167 | cd00710, LbH_gamma_CA, Gamma carbonic anhydrases ( | 4e-04 | |
| COG0663 | 176 | COG0663, PaaY, Carbonic anhydrases/acetyltransfera | 4e-04 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 4e-04 | |
| TIGR03991 | 337 | TIGR03991, alt_bact_glmU, UDP-N-acetylglucosamine | 4e-04 | |
| PRK14356 | 456 | PRK14356, glmU, bifunctional N-acetylglucosamine-1 | 5e-04 | |
| cd02516 | 218 | cd02516, CDP-ME_synthetase, CDP-ME synthetase is i | 7e-04 | |
| cd03354 | 101 | cd03354, LbH_SAT, Serine acetyltransferase (SAT): | 0.001 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 0.001 | |
| cd02517 | 239 | cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase ca | 0.001 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 0.002 | |
| PRK12461 | 255 | PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr | 0.002 | |
| PLN02694 | 294 | PLN02694, PLN02694, serine O-acetyltransferase | 0.002 | |
| PRK14355 | 459 | PRK14355, glmU, bifunctional N-acetylglucosamine-1 | 0.002 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 0.003 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 0.003 | |
| cd03353 | 193 | cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph | 0.003 | |
| cd03360 | 197 | cd03360, LbH_AT_putative, Putative Acyltransferase | 0.003 | |
| PLN02357 | 360 | PLN02357, PLN02357, serine acetyltransferase | 0.003 | |
| pfam00132 | 36 | pfam00132, Hexapep, Bacterial transferase hexapept | 0.004 | |
| cd04745 | 155 | cd04745, LbH_paaY_like, paaY-like: This group is c | 0.004 |
| >gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 303 bits (779), Expect = e-101
Identities = 124/281 (44%), Positives = 166/281 (59%), Gaps = 47/281 (16%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL 161
GP KGTRFRPLSLD PKPLFPVAG PMI HHIEAC +VP+LKE++++G+YP + F+
Sbjct: 7 GPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFIS 66
Query: 162 DMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEI 221
D QE+ + IRYLQE Y+ + G+Y +F +I
Sbjct: 67 DAQQEFNVPIRYLQE-----------------YKPLGTAGGLY-----------HFRDQI 98
Query: 222 RS---DVVILMHS-------LYSM-------AILVTVMATEATRQQSVYYGCIVRKQQTS 264
+ ++++ L + T++ TEA+R+Q+ YGCIV T
Sbjct: 99 LAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTG 158
Query: 265 EISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324
E+ HYVEKP TFVS L+NCGVYLFS +IF I FQS+Q E G+ + I
Sbjct: 159 EVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAE--VI 216
Query: 325 QLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHY 365
+LE++++ PLAGSGK YVY+T +WSQ+K+AGSAIYANR Y
Sbjct: 217 RLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 1e-41
Identities = 89/364 (24%), Positives = 149/364 (40%), Gaps = 67/364 (18%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR RPL+ D PKPL P+AG P+I++ +EA ++EI+++ Y ++++ D
Sbjct: 11 YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAA-GVEEIVLVVGYLGEQIEEYFGDG- 68
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEA--------VY 216
+ + I Y+ E + T G +N+L + V
Sbjct: 69 EGLGVRITYVVE------------------KEPLGTAGALKNALDLLGGDDFLVLNGDVL 110
Query: 217 FTLEIRSDVVILMH-SLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST 275
L++ ++ H ++A + + + +G + + + EKP
Sbjct: 111 TDLDLSE--LLEFHKKKGALATIALTRVLDPSE-----FGVVETDDGDGRVVEFREKPGP 163
Query: 276 FV--STLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMP 333
S L+N G+Y+F ++F I G+ DF E+E++
Sbjct: 164 EEPPSNLINAGIYIFDPEVFDYIEK-----------------GERFDF-----EEELLPA 201
Query: 334 LAGSGKA-YVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKT-----IG 387
LA G+ Y Y +W + + + AN L + P IG
Sbjct: 202 LAAKGEDVYGYVFEGYWLDIGTPEDLLEANE-LLLRGDGKSPLGPIEEPVVIIRSAYIIG 260
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
V I A + P A++GP I +G IG GV IK SII+ IG+ S + +SI+G N
Sbjct: 261 PVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENC 320
Query: 448 KVGN 451
K+G
Sbjct: 321 KIGA 324
|
Length = 358 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 6e-22
Identities = 57/253 (22%), Positives = 97/253 (38%), Gaps = 55/253 (21%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KGTR RPL+ PKPL P+AG P++++ IE + + EII++ Y ++++ D
Sbjct: 8 KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARA-GIDEIILVVGYLGEQIEEYFGDG- 65
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEA--------VY 216
++ +NI Y+ + T G RN+ ++ + V
Sbjct: 66 SKFGVNIEYVVQ------------------EEPLGTAGAVRNAEDFLGDDDFLVVNGDVL 107
Query: 217 FTLEIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF 276
L++ + I V + E + YG + ++ +VEKP+
Sbjct: 108 TDLDLSELLRFHREKGADATIAVKEV--EDPSR----YGVVELDDD-GRVTRFVEKPTLP 160
Query: 277 VSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAG 336
S L N G+Y+F +I I + +DE + I L
Sbjct: 161 ESNLANAGIYIFEPEILDYIPEILPRGEDE--------------------LTDAIPLLIE 200
Query: 337 SGKAYVYQTSKWW 349
GK Y Y +W
Sbjct: 201 EGKVYGYPVDGYW 213
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 2e-19
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 29/106 (27%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
I SA + TA +GPNV I IG GVR++ +IL +++ +HS V +SIVG NS VG
Sbjct: 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVG 61
Query: 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTV 496
W+R+E +T+LGD VT+
Sbjct: 62 RWTRLEN-----------------------------VTVLGDDVTI 78
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 9e-16
Identities = 89/393 (22%), Positives = 150/393 (38%), Gaps = 90/393 (22%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEI-IILGYYPSADLQKFVLDM 163
KGTR RPL+ PK L PVA P++Q+ IE + + +I I++G ++++ V +
Sbjct: 9 KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEA-GITDIGIVVGPVTGEEIKEIVGEG 67
Query: 164 VQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQE---AVY---- 216
+ + I Y I Q + L + +Y + ++ + VY
Sbjct: 68 ER-FGAKITY-------IVQGEPLGL----------AHAVYT-ARDFLGDDDFVVYLGDN 108
Query: 217 -FTLEIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST 275
I V Y IL+T + + T +G V + I VEKP
Sbjct: 109 LIQDGISRFVKSFEEKDYDALILLTKVR-DPTA-----FGVAVLEDG-KRILKLVEKPKE 161
Query: 276 FVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLA 335
S L G+Y+F IF+ I + S + E + TD I L
Sbjct: 162 PPSNLAVVGLYMFRPLIFEAIKNIKPSWRGEL---------EITD---------AIQWLI 203
Query: 336 GSGKAYVYQTSK-WWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSS 394
G WW + ANR L + E + K G V +
Sbjct: 204 EKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVE---REVQGVDDESKIRGRVVVGEG 260
Query: 395 AS-----VHPTAIVGPNVSIDDGAVIGP------GVRIKE-----SIILQGASI-GNHSL 437
A + A++G + I++ + IGP GV I++ SI+L + I G +
Sbjct: 261 AKIVNSVIRGPAVIGEDCIIEN-SYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQAR 319
Query: 438 VLNSIVGRNSKV--------------GNWSRVE 456
+++S++G+ ++ G++S+VE
Sbjct: 320 IVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 39/208 (18%)
Query: 105 KGTRFRPLSLDSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDM 163
GTR PL+ KPL PV PMIQ+ + + + I+I + + + D
Sbjct: 9 SGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFLVAEQLGDG 68
Query: 164 VQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYG-IYRNSLHWVQEAVYFTLEIR 222
++ + + Y + R T + + + L +
Sbjct: 69 -SKFGLQVTYALQ------------------PEPRGTAPAVALAADFLGDDDPELVLVLG 109
Query: 223 SDVVI---LMHSL-----YSMAILVTVMAT---EATRQQSVYYGCIVRKQQTSEISHYVE 271
D + ++ + VT + T YG I + + +VE
Sbjct: 110 GDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTG-----YGVIEF-DENGRVIRFVE 163
Query: 272 KPSTFV-STLVNCGVYLFSLDIFQNIAA 298
KP S + G+Y F+ +F +A
Sbjct: 164 KPDLPKASNYASMGIYFFNSGVFLFLAK 191
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 7e-13
Identities = 80/379 (21%), Positives = 130/379 (34%), Gaps = 88/379 (23%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KGTR + D PK L P+AG PM++H I+A + K ++ G+ A+ V +
Sbjct: 10 KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGH--GAEQ---VRKAL 61
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRSD 224
+N W + +Q G + H V +A+ F L D
Sbjct: 62 ANRDVN-------WVLQAEQ----------------LG----TGHAVLQALPF-LPDDGD 93
Query: 225 VVIL-----------------MHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEIS 267
V++L H + +L + YG I+R+ +
Sbjct: 94 VLVLYGDVPLISAETLERLLEAHRQNGITLLTAKLPDPTG------YGRIIRENDGKVTA 147
Query: 268 HYVEK---PSTFVSTLVNCGVYLFSLDIFQNIAAVF--QSKQDEFYNG---NYMVNGKDT 319
+K +N GVY+F + + Q E+Y V +T
Sbjct: 148 IVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGET 207
Query: 320 DFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAI---YANRHYLQLYKTRHPER 376
+ + ++ + + QL + A + L R P R
Sbjct: 208 VRAVQVDDSDEVLGV----------NDRL--QLAQLERILQRRIAKKLLLAGVTLRDPAR 255
Query: 377 LQCSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHS 436
G V I + P I+ V I D VIGPG IK S+I I +S
Sbjct: 256 FDIR------GTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYS 309
Query: 437 LVLNSIVGRNSKVGNWSRV 455
++ S +G VG ++R+
Sbjct: 310 VLEGSEIGEGCDVGPFARL 328
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 1e-12
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII-LGYYPSADLQKFVLDMV 164
GTR RPL+L PKPL PMI+H IEA + +KEII+ + Y P D+ F+ +
Sbjct: 11 GTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKA-GVKEIILAVNYRPE-DMVPFLKEYE 68
Query: 165 QEYKINIRYLQE 176
++ I I + E
Sbjct: 69 KKLGIKITFSIE 80
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 50/204 (24%), Positives = 78/204 (38%), Gaps = 38/204 (18%)
Query: 265 EISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324
++ VEKP S L+N G+YLFS +IF+ + S + E+ + TD
Sbjct: 145 RVTGIVEKPENPPSNLINAGIYLFSPEIFELLEKTKLSPRGEY---------ELTD---- 191
Query: 325 QLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCK 384
+ L GK + +W + + AN L + R ++
Sbjct: 192 -----ALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEALLDNLEPRIEGTVE--ENVT 244
Query: 385 TIGDV------------------YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESII 426
G V YI + + P A + P I + IG V IK SII
Sbjct: 245 IKGPVVIGEGAVIRSGTYIEGPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIKNSII 304
Query: 427 LQGASIGNHSLVLNSIVGRNSKVG 450
++G I + S V +S++G N G
Sbjct: 305 MEGTKIPHLSYVGDSVIGENCNFG 328
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 2e-12
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKV 449
IH SA + P+A +G VSI AVIG GV I + +I GA IG+ +G + ++
Sbjct: 103 IHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGD-----GVKIGADCRL 157
Query: 450 GNWSRV 455
+ V
Sbjct: 158 --HANV 161
|
Length = 343 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-12
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKV 449
I S + AI+ +V I D IG GV I SI++ +IG +S++++SI+G N+ +
Sbjct: 1 LIGESTVIGENAIIKNSV-IGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVI 59
Query: 450 GNWSRVEG 457
G RV
Sbjct: 60 GENVRVVN 67
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 8e-10
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 386 IGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGR 445
G V I + P A + + DG V+G V +K SII+ G + + + V +S++G
Sbjct: 33 EGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGE 92
Query: 446 NSKVG 450
N +G
Sbjct: 93 NVNLG 97
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163 |
| >gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-------SIILQGASIGNHSLVL-N 440
IH +A + PTA +G NVSI VIG GV I E ++I + IG+ +++ N
Sbjct: 100 AGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPN 159
Query: 441 SIVGRNSKVGN 451
+ N +GN
Sbjct: 160 VTIYHNVVIGN 170
|
Length = 338 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
GTR RPL+ PKPL PVAG P+I H ++ ++ I++
Sbjct: 10 GTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAA-GIRRIVV 50
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 77/386 (19%), Positives = 144/386 (37%), Gaps = 77/386 (19%)
Query: 105 KGTRFRPLSLDSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDM 163
+G+R PL+ KP P G +I + C+ ++ I +L Y S L + +
Sbjct: 8 RGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCIN-SGIRRIGVLTQYKSHSLNRHI--- 63
Query: 164 VQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRS 223
+ + + ++ F ++ Q S WY+ T +Y+N + L +
Sbjct: 64 QRGWDFD-GFIDGFVTLLPAQQRESGT-DWYQGTAD--AVYQNLDLIEDYDPEYVLILSG 119
Query: 224 DVVILMHSLYSM---AIL---------VTVMATEATRQQSVYYGCIVRKQQTSE---ISH 268
D H +Y M +L VT+ R+++ +G + Q E I
Sbjct: 120 D-----H-IYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVM----QVDEDGRIVD 169
Query: 269 YVEKPSTFVST-------LVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDF 321
+ EKP+ S L + G+Y+F D+ + + + + ++ DF
Sbjct: 170 FEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELL----EEDADDPESSH-------DF 218
Query: 322 NHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQ------LYKTRHPE 375
K+II G Y S +W + + S AN + LY + P
Sbjct: 219 G-----KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPI 273
Query: 376 RLQCSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAV----------IGPGVRIKESI 425
+ ++ S A V ++V I V IG G +++S+
Sbjct: 274 Y---TYNEFLPPAKFVDSDAQVV-DSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSV 329
Query: 426 ILQGASIGNHSLVLNSIVGRNSKVGN 451
I+ IG +++ N+I+ +N ++G
Sbjct: 330 IMGDVGIGRGAVIRNAIIDKNVRIGE 355
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 7e-09
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKES-IILQGASIGNHSLVLNSIVGR 445
G V+I A V A + V I G IGP I+ ++ G +GN V NSI+
Sbjct: 16 GPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMD 75
Query: 446 NSKVGNWSRV 455
+KV + + V
Sbjct: 76 GTKVPHLNYV 85
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 8e-09
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEI-IILGYYPSADLQKFVLDM 163
KGTR RPL+ PK L PVAG P+IQ+ IE + +++I I++G ++++ + D
Sbjct: 10 KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREA-GIEDIGIVVGPTG-EEIKEALGD- 66
Query: 164 VQEYKINIRY-LQE 176
+ + I Y LQE
Sbjct: 67 GSRFGVRITYILQE 80
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 9e-09
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
GDV I + P I+ N I D VIGPG IK+S+I A I +S++ S VG
Sbjct: 267 GDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG 326
Query: 447 SKVGNWSRV 455
+ VG ++R+
Sbjct: 327 ATVGPFARL 335
|
Length = 460 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
KGTR RPL+ PKP+ PVAG P+++H IEA + ++GY
Sbjct: 10 KGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGY 55
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 9e-08
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKES-IILQGASIGNHSLVLNSIVGRNSKV 449
IH +A V P+A +G V+I VIG GV I E+ II G IG+ + ++G S++
Sbjct: 94 IHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGD-----DVVIGDGSRI 148
Query: 450 GNWSRV 455
V
Sbjct: 149 --HPNV 152
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324 |
| >gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 1e-07
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 389 VYIHSSASVHPTAIVGPNV------SIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSI 442
YI + ++ P V I + VIGP IK+S I G I S++ ++
Sbjct: 10 TYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAV 69
Query: 443 VGRNSKVGNWSRV 455
+G + VG ++ +
Sbjct: 70 IGNGATVGPFAHL 82
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193 |
| >gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 1e-07
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
IH +A V P A +G NV I VIGP V I + G IG+H ++ ++ +G+N+++
Sbjct: 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGD-----GTVIGSHVVIDGHTTIGKNNRI 59
|
Length = 262 |
| >gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 2e-07
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 397 VHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV-LNSIVGRNSKVGN 451
+HP+A+V P+ I +G VI G +I A IG++ ++ +++G + +G+
Sbjct: 87 IHPSAVVSPSAVIGEGCVIMAGA-----VINPDARIGDNVIINTGAVIGHDCVIGD 137
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197 |
| >gnl|CDD|218605 pfam05486, SRP9-21, Signal recognition particle 9 kDa protein (SRP9) | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 17 DNARYSMKYDH---KNGYLKLKMTDDNV--CLIYKTEMSQDLKKIDNA 59
RYS+KY H G L LK TD + CL YKT +++L ++ +
Sbjct: 20 SKTRYSIKYRHPSASTGKLTLKTTDPHSGICLKYKTNKAKELSRLLSF 67
|
This family consists of several eukaryotic SRP9 proteins. SRP9 together with the Alu-homologous region of 7SL RNA and SRP14 comprise the "Alu domain" of SRP, which mediates pausing of synthesis of ribosome associated nascent polypeptides that have been engaged by the targeting domain of SRP. This family also contains the homologous fungal SRP21. Length = 76 |
| >gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-07
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 385 TIG-DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-------SIILQGASIG 433
IG V I + P ++G V I D VI P V I E II GA IG
Sbjct: 15 VIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIG 71
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-07
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 409 IDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAF 468
I + VIG IK S+I IG+ + NSI+ N +G S + + N
Sbjct: 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAV--- 58
Query: 469 AKMDNPPLFNSNGKLNPSITILGDGVTVP 497
N ++ I+GD V V
Sbjct: 59 --------IGENVRVVNL-CIIGDDVVVE 78
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 47/246 (19%)
Query: 239 VTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPS--TFVSTLVNCGVYLFSLDIFQNI 296
VTV E R+++ +G ++ + I +VEKP+ ++L + G+Y+F+ D+ + +
Sbjct: 149 VTVAVKEVPREEASRFG-VMNVDENGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKEL 207
Query: 297 AAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAG 356
++D + DF K+II L GK Y Y+ S +W + +
Sbjct: 208 L-----EEDAKDPNSS------HDFG-----KDIIPKLLERGKVYAYEFSGYWRDVGTID 251
Query: 357 SAIYANRHYLQ------LY----------KTRHPERLQCSSQCKT---IGDVYIHSSASV 397
S AN L LY K P + S+ G I +
Sbjct: 252 SYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISGTVE- 310
Query: 398 HPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457
+++ V I G+V I+ S+I+ IG +++ +I+ +N +G + G
Sbjct: 311 --NSVLFRGVRIGKGSV------IENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGG 362
Query: 458 TPCDPN 463
+ +
Sbjct: 363 DKPEED 368
|
Length = 393 |
| >gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 4e-07
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 386 IGDVYIHSSASVHPTA---------IVGPNVSIDDGAV----------IGPGVRIKESII 426
IGDV + +SV A +G +I DG+V IG V + +
Sbjct: 15 IGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAV 74
Query: 427 LQGASIGNHSLV-LNSIVGRNSKVGNWSRVE 456
L G +IG++ L+ + +I+ + +G S V
Sbjct: 75 LHGCTIGDNCLIGMGAIILDGAVIGKGSIVA 105
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 5e-07
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 18/80 (22%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII-LGYYPSADLQKFVLDM 163
KGTR RPL+ ++PKP+ V G P+++ I+ + + I + Y +M
Sbjct: 8 KGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQ-GFRNFYISVNYLA---------EM 57
Query: 164 VQEY-------KINIRYLQE 176
+++Y +NI Y++E
Sbjct: 58 IEDYFGDGSKFGVNISYVRE 77
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 5e-07
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 19/62 (30%)
Query: 391 IHSSASVHPTA------------IVGPNVSIDDGAVIGPGVRI-------KESIILQGAS 431
IH +A V P A ++GPNV I DG VIG V I K + I AS
Sbjct: 2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFAS 61
Query: 432 IG 433
IG
Sbjct: 62 IG 63
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254 |
| >gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII-LGY 150
+G+R RPL+ D PK L + G P+++ IE + + +I+I GY
Sbjct: 8 RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEA-GIDDIVIVTGY 53
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229 |
| >gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-07
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIG---PGVRIKESIILQGASIGNHSLVL- 439
IG+ V IH A + ++G NV+I GAVIG +II IG ++++
Sbjct: 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG 61
Query: 440 NSIVGRNSKVGN 451
+G N+ +G
Sbjct: 62 GVKIGDNAVIGA 73
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78 |
| >gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 7e-07
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 385 TIG-DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-------SIILQGASIGNHS 436
IG +V I +A + ++G V I G VIG GV I + I +G IG+
Sbjct: 3 KIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRV 62
Query: 437 LVL-NSIVG 444
++ +++G
Sbjct: 63 IIHSGAVIG 71
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205 |
| >gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 8e-07
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 394 SASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGN 451
SA + +GPN I +G VIG GV I +I G IG+ ++ N + +G+
Sbjct: 1 SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 25/110 (22%)
Query: 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAV 299
T++ T+ YG +V + T I +VEKP FV +N G+Y+ + + I
Sbjct: 132 TILVTKVE--DPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILNPSVLDRI--- 186
Query: 300 FQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWW 349
+EKEI +A G+ Y Y+ +W
Sbjct: 187 ----PLR----------------PTSIEKEIFPKMASEGQLYAYELPGFW 216
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEI-IILGYYPSADLQKFVLDM 163
GTR RPL+ PK L PV PMI + +E + +++I I++G ++ + D
Sbjct: 10 SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLA-GIRDILIVVGPEDKPTFKELLGDG 68
Query: 164 VQEYKINIRY 173
++I Y
Sbjct: 69 SDFG-VDITY 77
|
Length = 286 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIIL 148
G+RF PL+ D PK L PVA +P+I + +E + ++E+ ++
Sbjct: 10 FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKA-GVEEVFVV 52
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 3e-06
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV-----L--NS 441
V + + ++GPN I D IG GV IK S +++GA IGN + V L +
Sbjct: 28 VILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGT 86
Query: 442 IVGRNSKVGN 451
++G +GN
Sbjct: 87 VLGEGVHIGN 96
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193 |
| >gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLV 438
IH SA V P+A +G I GAVI P VRI + II GA + + ++
Sbjct: 79 TLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVI 129
|
This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193 |
| >gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
V I + + A++G NV I DG VI P V I IGN N I+ +
Sbjct: 129 GVVIGENVVIGAGAVIGENVKIGDGTVIHPNV-----TIYHNVVIGN-----NVIIHSGA 178
Query: 448 KVGN 451
+G
Sbjct: 179 VIGA 182
|
Length = 338 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 6e-06
Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 402 IVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP 459
++ V +G G +++S+I+ IG ++++ +I+ +N + + + G P
Sbjct: 30 VLFRGV------RVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGDP 81
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 9e-06
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLV 438
IH SA V P+A++G I GAVI P RI + II GA IG+ ++
Sbjct: 85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVI 135
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197 |
| >gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
IH +A + P A +G +V I +IGP V I + G + +H +V ++ +GRN+++
Sbjct: 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGD-----GTVLKSHVVVEGHTTIGRNNRI 60
Query: 450 GNWSRVEGTPCD 461
++ + P D
Sbjct: 61 FPFASIGEDPQD 72
|
Length = 260 |
| >gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 23/129 (17%)
Query: 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-----------KESIILQGASIGNHSLV 438
I SA VHPTA+V +V I D +GPG I I G I H+L
Sbjct: 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVI--HALE 61
Query: 439 LNSI-VGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITI----LGDG 493
S+ +G+N + + + V G P N F +FN+ K+ + I + DG
Sbjct: 62 GYSVWIGKNVSIAHGAIVHG-PAYIGDN-CFIGF-RSVVFNA--KVGDNCVIGHNAVVDG 116
Query: 494 VTVPGELIV 502
V +P V
Sbjct: 117 VEIPPGRYV 125
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167 |
| >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 389 VYIHSSASVHPTAIVGPNV------SIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSI 442
YI + + ++ P V I + VIGPG RI +S I G +I +S++ S
Sbjct: 260 TYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTI-TNSVIEESK 318
Query: 443 VGRNSKVG 450
VG N VG
Sbjct: 319 VGDNVTVG 326
|
Length = 458 |
| >gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
IH +A + P A +G NV I ++GPGV+I + G + +H ++L ++ +G +++
Sbjct: 1 IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIGD-----GVELKSHVVILGHTTIGEGTRI 55
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254 |
| >gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 20/87 (22%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKES--------------IILQG 429
IGD IH + +++ ++G NV I GAVIG II
Sbjct: 149 KIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDD 208
Query: 430 ASIG-----NHSLVLNSIVGRNSKVGN 451
IG + + ++++G K+ N
Sbjct: 209 VEIGANTTIDRGALDDTVIGEGVKIDN 235
|
Length = 338 |
| >gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 3e-05
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 38/103 (36%)
Query: 391 IHSSASVHPTA------IVGPNVSIDDGAV------------------------------ 414
I +A V P+A +G VSI GAV
Sbjct: 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPV 73
Query: 415 -IGPGVRIKESIILQGASIGNHSLV-LNSIVGRNSKVGNWSRV 455
IG V I ++ G +IG++ L+ + + V + +G+ S V
Sbjct: 74 TIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIV 116
|
Length = 176 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEI-IILGYYPSADLQKFVLDM 163
KGTR + S D PK L P+AG PM++H ++A + I +++G+ A+ V
Sbjct: 8 KGTRMK--S-DLPKVLHPLAGKPMLEHVLDAARAL-GPDRIVVVVGH--GAEQ---VKKA 58
Query: 164 VQEYKINIRYLQE 176
+ + LQE
Sbjct: 59 LANPNVEF-VLQE 70
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-05
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 397 VHPTAIVGPNVSID-----DGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
V VG SI IG V+I +I+ +I + + N I+G + +G
Sbjct: 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIG 60
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81 |
| >gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK 422
I + + P ++G V I D +IG GV I
Sbjct: 1 GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIG 35
|
Length = 36 |
| >gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIE----ACVQVPNLKEIIILGYYPSADLQKFV 160
RFRPL+ + P+ L P+A +P+I + +E V+ E+ + S +++++
Sbjct: 11 NRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVE-----EVFVFCCSHSDQIKEYI 64
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217 |
| >gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 395 ASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVL-NSIVGRNSKVGNW 452
A +HPTA+ ID A IG V I +I G IG + ++ +++G N K+G+
Sbjct: 100 AGIHPTAV------IDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDG 153
Query: 453 SRVEG 457
+ +
Sbjct: 154 TVIHP 158
|
Length = 338 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 20/89 (22%)
Query: 391 IHSSASVHPTAIVGPNVS-----IDDGAV---------------IGPGVRIKESIILQGA 430
I+S P + N + +G V +G G +K+S+I+ GA
Sbjct: 273 IYSVNPNLPPQYIAENAKVKNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGA 332
Query: 431 SIGNHSLVLNSIVGRNSKVGNWSRVEGTP 459
IG + ++ +I+G N+ +G+ + G
Sbjct: 333 KIGENVVIERAIIGENAVIGDGVIIGGGK 361
|
Length = 380 |
| >gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
G+RF PL+ +PK L V G P+I+ IE + I++GY
Sbjct: 11 GSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGY 55
|
Length = 231 |
| >gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 395 ASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWS 453
A +HPTA+V P+ I DG IGP V +I G IG + ++ ++G + +G+ S
Sbjct: 92 AGIHPTAVVDPSAKIGDGVTIGPNV-----VIGAGVEIGENVIIGPGVVIGDDVVIGDGS 146
Query: 454 RV 455
R+
Sbjct: 147 RI 148
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 50/258 (19%), Positives = 81/258 (31%), Gaps = 80/258 (31%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL--- 161
GTR R + D PKPL PVAG P +++ +L Y + + VL
Sbjct: 8 LGTRLRSVVKDLPKPLAPVAGRPFLEY---------------LLEYLARQGISRIVLSVG 52
Query: 162 ---DMVQEYKINIRYLQE--FWDIIHQQICISLYWTWYRNTRS---TYGIYRNSLHWVQE 213
+ + Y + I +Y T G +N+L + E
Sbjct: 53 YLAEQI------EEYFGDGYRGGIRI----------YYVIEPEPLGTGGAIKNALPKLPE 96
Query: 214 AVYFTL------EIRSDVVILMHSLYSMAILVTVMATEATRQQSVY-YGCI-VRKQQTSE 265
+ L ++ ++ + + R YG + V
Sbjct: 97 DQFLVLNGDTYFDVDLLALLAALRASGADATMAL-----RRVPDASRYGNVTVDGDG--R 149
Query: 266 ISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQ 325
+ +VEK L+N GVYL +I I A D F
Sbjct: 150 VIAFVEKGPGAAPGLINGGVYLLRKEILAEIPA------DAFS----------------- 186
Query: 326 LEKEIIMPLAGSGKAYVY 343
LE +++ L G+ Y +
Sbjct: 187 LEADVLPALVKRGRLYGF 204
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 23/93 (24%)
Query: 386 IGDVYIHSSASVHPTA----------IVGPNVSIDDGAV----------IGPGVRIKESI 425
IGDV I + V P A I+G NV+I DG V IG V I
Sbjct: 18 IGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGA 77
Query: 426 ILQG-ASIGNHSLV-LNSIVGRNSKVGNWSRVE 456
I+ G A IG++ + S+V N+KVG+ +
Sbjct: 78 IVHGPAYIGDNCFIGFRSVV-FNAKVGDNCVIG 109
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167 |
| >gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 26/91 (28%)
Query: 386 IGDVYIHSSASVHPTA---------IVGPNVSIDDGAV----------IGPGVRIKESII 426
IGDV I + S+ P A +G +I DG V IG V I +
Sbjct: 27 IGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAV 86
Query: 427 LQGASIGN------HSLVLN-SIVGRNSKVG 450
+ G +IG+ + VL+ +++G S VG
Sbjct: 87 VHGCTIGDNVLIGMGATVLDGAVIGDGSIVG 117
|
Length = 176 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 4e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 11/66 (16%)
Query: 402 IVGPNVSIDDGAV-----------IGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
++G SI +G IG V I S I +I + + +SIV + +G
Sbjct: 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIG 60
Query: 451 NWSRVE 456
+
Sbjct: 61 KGCTIP 66
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|234432 TIGR03991, alt_bact_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 397 VHPTAIVGPNVSID--DGAV-IGPGVRIKESIILQG-ASIGNHSLV-LNSIVGRNSKVGN 451
+ A V P +D DG + IG RI+ L+G IG + V + + + +G
Sbjct: 126 IEEGATVRPGAVLDASDGPIYIGKDARIEPFSFLEGPVYIGPGARVKAGARIYGGTSIGP 185
Query: 452 WSRVEG 457
++ G
Sbjct: 186 TCKIGG 191
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Homologs of this enzyme are identified in a number of bacterial organisms and modeled here. A number of these are observed in proximity to the GlmS and GlmM genes, and phylogenetic profiling by PPP identifies the LEPBI_I0518 gene in Leptospira biflexa as a likely Glm-system candidate. Multiple sequence alignments of these bacterial homologs with their archaeal counterparts reveals significant structural differences, necessitating the construction of separate models. Length = 337 |
| >gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVI-GPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
V IH+ SV +GP +I+ GA I GP S I +GA I +H + +++V +
Sbjct: 256 VLIHAPESVR----IGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGA 311
Query: 448 KVGNWSRVEG 457
+ ++S +EG
Sbjct: 312 TIHSFSHLEG 321
|
Length = 456 |
| >gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
G+R D PK + G P+++H +EA + P + EI++
Sbjct: 10 SGSRM---GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVV 49
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218 |
| >gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.001
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 397 VHPTAIVGPNVSIDDGAVIGPGVRIKES---IILQGASIGNHSLVLNSI-VGRNSKVG 450
+ TA++G N +I G +G + I IG + +L +I +G N K+G
Sbjct: 25 IGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIG 82
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. Length = 101 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIIL 148
G+R PL+ + PK L PVA PMI + ++ + +++I++
Sbjct: 10 GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA-GFEDVIVV 52
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|133010 cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.001
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 107 TRFRPLSLDSP-KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
+R P KPL +AG PMIQH E + L E+++
Sbjct: 13 SRL-------PGKPLADIAGKPMIQHVYERAKKAKGLDEVVV 47
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. Length = 239 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
KGTR + D PK L PVAG PM++H I+A + ++++G+
Sbjct: 12 KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGH 54
|
Length = 460 |
| >gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 19/62 (30%)
Query: 391 IHSSASVHPTA------------IVGPNVSIDDGAVIGPGVRI-------KESIILQGAS 431
IH +A + P+A ++G NV I DG IGP I K + I QGA
Sbjct: 2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAV 61
Query: 432 IG 433
+G
Sbjct: 62 VG 63
|
Length = 255 |
| >gnl|CDD|178297 PLN02694, PLN02694, serine O-acetyltransferase | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 36/136 (26%)
Query: 358 AIYANRHYLQLY-KTRHPERLQCSSQCKTIGDVYIHSSAS--------------VHPTAI 402
A A+R +L+ ++R P L S+ + V IH +A + TA+
Sbjct: 129 ACQAHRVAHKLWTQSRRPLALALHSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAV 188
Query: 403 VGPNVSI--------------------DDGAVIGPGVRIKESI-ILQGASIGNHSLVLNS 441
+G NVSI DG +IG G I ++ I +GA IG S+VL
Sbjct: 189 IGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLID 248
Query: 442 IVGRNSKVGNWSRVEG 457
+ R + VGN +R+ G
Sbjct: 249 VPPRTTAVGNPARLVG 264
|
Length = 294 |
| >gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSK 448
YI + + P V I IG G I++ ++++G IG+ V V +S
Sbjct: 263 TYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSV 322
Query: 449 VGN 451
VG+
Sbjct: 323 VGD 325
|
Length = 459 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 254 YGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDE 306
+G V I VEKP S L GVY F+ IF I+ + S + E
Sbjct: 141 FGVAVVDD--GRIVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGE 191
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 400 TAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457
T + +V I VI P V ++ ++I IG S++ +S++G N+ + +S +EG
Sbjct: 262 TTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEG 320
|
Length = 460 |
| >gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.003
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 397 VHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE 456
+ +G +V ID G ++ I E IG + ++ +S +G + S +E
Sbjct: 12 IDGDVEIGVDVVIDPGVILEGKTVIGE-----DCVIGPNCVIKDSTIGDGVVIKASSVIE 66
Query: 457 G 457
G
Sbjct: 67 G 67
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193 |
| >gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.003
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 385 TIGD-VYIHSSASV-H-----------PTAIVGPNVSIDDGAVIGPGVRIKESIILQGAS 431
IGD V I++ A + H P ++ V+I +GA IG G + I+QG +
Sbjct: 116 RIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAG-----ATIIQGVT 170
Query: 432 IGNHSLV-LNSIVGRNSKVGNWSRVEGTP 459
IG +++ ++V ++ V + S V G P
Sbjct: 171 IGAGAIIGAGAVVTKD--VPDGSVVVGNP 197
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197 |
| >gnl|CDD|215205 PLN02357, PLN02357, serine acetyltransferase | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Query: 400 TAIVGPNVSI--------------------DDGAVIGPGVRIKESI-ILQGASIGNHSLV 438
TA+VG NVSI DG +IG G I +I I +GA IG S+V
Sbjct: 252 TAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVV 311
Query: 439 LNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLF 477
L + R + VGN +R+ G +P K D P
Sbjct: 312 LKDVPPRTTAVGNPARLIGGKENP------IKHDKIPSL 344
|
Length = 360 |
| >gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 401 AIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLN 440
++G NV I VIG GV I + IG ++
Sbjct: 2 TVIGENVLIGPNVVIGGGVIIGD-----NVIIGAGVVIGG 36
|
Length = 36 |
| >gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 26/86 (30%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGP---------------GVRIKESIILQG------ 429
+ S+ VHPTA++ +V I IGP G ++++ ++ G
Sbjct: 3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDT 62
Query: 430 -----ASIGNHSLVLNSIVGRNSKVG 450
IG+ +++ +GRN+ VG
Sbjct: 63 VLEENGHIGHGAILHGCTIGRNALVG 88
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 523 | |||
| KOG1460|consensus | 407 | 100.0 | ||
| KOG1322|consensus | 371 | 100.0 | ||
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1461|consensus | 673 | 100.0 | ||
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| KOG1462|consensus | 433 | 100.0 | ||
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 99.98 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 99.97 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 99.97 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 99.97 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 99.97 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 99.97 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 99.96 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 99.96 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 99.96 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 99.96 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 99.95 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.93 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.93 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.91 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.91 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.89 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.89 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.87 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.86 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.86 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.85 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.85 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.84 | |
| KOG3465|consensus | 86 | 99.79 | ||
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.79 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.78 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.74 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.73 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.72 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.69 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.68 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.67 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.66 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.66 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.65 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.64 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.64 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.64 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.64 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.64 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.62 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.61 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.6 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.6 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.6 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.59 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.59 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.59 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.57 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.57 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.57 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 99.56 | |
| PLN02296 | 269 | carbonate dehydratase | 99.55 | |
| PF05486 | 79 | SRP9-21: Signal recognition particle 9 kDa protein | 99.54 | |
| PLN02472 | 246 | uncharacterized protein | 99.53 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.53 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.52 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.51 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 99.5 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.5 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.49 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.48 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.47 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.47 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.47 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.46 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.46 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.45 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.45 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.44 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.43 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.43 | |
| PLN02296 | 269 | carbonate dehydratase | 99.41 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.41 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.4 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.4 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.4 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.39 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.39 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.39 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.37 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.37 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.36 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.36 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 99.36 | |
| PLN02472 | 246 | uncharacterized protein | 99.36 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.35 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 99.35 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.34 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.34 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.34 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.33 | |
| KOG1462|consensus | 433 | 99.32 | ||
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.32 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 99.32 | |
| KOG1461|consensus | 673 | 99.31 | ||
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.31 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.31 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.3 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 99.29 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.29 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.28 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.28 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 99.26 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.26 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 99.25 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.25 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 99.25 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.24 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.23 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.23 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 99.22 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.2 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.19 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.18 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 99.18 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 99.18 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.18 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 99.16 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.16 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.15 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 99.15 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.14 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.14 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 99.14 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 99.13 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.12 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.11 | |
| PLN02694 | 294 | serine O-acetyltransferase | 99.11 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 99.11 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.08 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.06 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.06 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 99.05 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 99.05 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 99.04 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.03 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 99.03 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 99.01 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 99.0 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 99.0 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 98.99 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.98 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.98 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 98.98 | |
| PLN02739 | 355 | serine acetyltransferase | 98.97 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.96 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.95 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.94 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 98.94 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.93 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.92 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.9 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.89 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.89 | |
| KOG4042|consensus | 190 | 98.88 | ||
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.88 | |
| PLN02357 | 360 | serine acetyltransferase | 98.88 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.88 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.87 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.87 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.87 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.86 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 98.85 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.85 | |
| PLN02739 | 355 | serine acetyltransferase | 98.8 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.79 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 98.79 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.78 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 98.77 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 98.77 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 98.77 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.76 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.76 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.75 | |
| KOG3121|consensus | 184 | 98.74 | ||
| PLN02357 | 360 | serine acetyltransferase | 98.74 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 98.73 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 98.71 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.71 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.69 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.69 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 98.67 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 98.67 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.66 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.66 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.64 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 98.63 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.62 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 98.61 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.6 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.59 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.58 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 98.56 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 98.56 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.52 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 98.51 | |
| KOG4750|consensus | 269 | 98.46 | ||
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.45 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.44 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 98.43 | |
| KOG4042|consensus | 190 | 98.42 | ||
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 98.31 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 98.27 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 98.27 | |
| KOG1460|consensus | 407 | 98.26 | ||
| KOG3121|consensus | 184 | 98.12 | ||
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 98.06 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 98.01 | |
| KOG1322|consensus | 371 | 97.97 | ||
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.89 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 97.88 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 97.77 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.76 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 97.66 | |
| KOG4750|consensus | 269 | 97.65 | ||
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 97.64 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 97.58 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 97.38 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 97.36 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.28 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 97.25 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.23 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 97.04 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 97.02 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 97.01 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.83 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 96.58 | |
| KOG2638|consensus | 498 | 96.27 | ||
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 95.08 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 89.81 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 89.19 |
| >KOG1460|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-60 Score=444.26 Aligned_cols=394 Identities=47% Similarity=0.828 Sum_probs=348.8
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|..+||||.+|+-+||||+||+.+.||||+||+|+|||+|.++++.+.++..+|+++.-|+++.+.+|+....+++.+.+
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pv 80 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPV 80 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccch
Confidence 45689999999999999999999999999999999999999999999999999999999999999999998777788999
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--cchHH----HHHHHHhcCCcceEEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--IRSDV----VILMHSLYSMAILVTVM 242 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i~~D~----l~~~h~~~~~~~~~tv~ 242 (523)
+|++++.++| ||+.|+ ++.|- +.++. ++++| ++||| |++.|+.++ ..++++
T Consensus 81 rYL~E~~plG-----------------taGgLyhFrdqIl~g~ps~-vFvlnaDVCcsfPl~~ml~ahr~~g--~~~tll 140 (407)
T KOG1460|consen 81 RYLREDNPLG-----------------TAGGLYHFRDQILAGSPSA-VFVLNADVCCSFPLQDMLEAHRRYG--GIGTLL 140 (407)
T ss_pred hhhccCCCCC-----------------cccceeehhhHHhcCCCce-EEEEecceecCCcHHHHHHHHhhcC--CceEEE
Confidence 9999999999 999999 77765 66777 99999 88888 999999988 999999
Q ss_pred EEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhccccc-ccccccccccCCCC-C
Q psy17795 243 ATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQD-EFYNGNYMVNGKDT-D 320 (523)
Q Consensus 243 ~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~-e~~~~~~~~~~~~~-~ 320 (523)
++++.+++.++||.++.|++|++|+++.|||..+.++.++||+|+|++++|+.+.+.+...++ +-...+++ +-|. .
T Consensus 141 ~tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~--~l~~g~ 218 (407)
T KOG1460|consen 141 VTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLP--LLQPGP 218 (407)
T ss_pred EEEecHhHhhccCeeeecCCcCceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhccc--ccCCCc
Confidence 999998899999999999889999999999999999999999999999999999887665422 00000111 1111 3
Q ss_pred cccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCC--ceEecCcEECCCCEEC
Q psy17795 321 FNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQ--CKTIGDVYIHSSASVH 398 (523)
Q Consensus 321 ~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~--~~i~~~~~i~~~~~I~ 398 (523)
.+...+++|++..|+.++++|+|...++|..+.|+.+.+.+++.||+.+....|.++...++ +.|.++++|+|++.++
T Consensus 219 ~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvh 298 (407)
T KOG1460|consen 219 ADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVH 298 (407)
T ss_pred cceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeC
Confidence 45678899999999999999999999999999999999999999999988888877765444 4599999999999999
Q ss_pred CCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeec
Q psy17795 399 PTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFN 478 (523)
Q Consensus 399 ~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig 478 (523)
|+++||+|+.||+++.||+++.|.+|+|-++|.|.+|+.+.+|+||.++.||.++++.+....++...+..
T Consensus 299 ptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~--------- 369 (407)
T KOG1460|consen 299 PTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFA--------- 369 (407)
T ss_pred CccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcc---------
Confidence 99999999999999999999999999999999999999999999999999999999988765544322211
Q ss_pred CCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcccC
Q psy17795 479 SNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEILL 523 (523)
Q Consensus 479 ~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~i~ 523 (523)
..+++|+.|.+++.+.|.+|++.|+++++.++.++|||
T Consensus 370 -------a~Tilga~v~v~dev~v~~s~vlp~k~l~vs~~~eIil 407 (407)
T KOG1460|consen 370 -------ALTILGADVSVEDEVIVLNSIVLPNKELNVSVQDEIIL 407 (407)
T ss_pred -------eeEEecccceecceeEEeeeeEecCCccceeeecceeC
Confidence 22899999999999999999999999999999999986
|
|
| >KOG1322|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=423.63 Aligned_cols=354 Identities=27% Similarity=0.436 Sum_probs=308.0
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhh-hhccCeeE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDM-VQEYKINI 171 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~-~~~~~~~i 171 (523)
.|+||||.|| .||||+|||..+|||++|++++|||+|+++++.+. |+++|++.++|..+++..++.+. +.++|+++
T Consensus 9 ~vkaiILvGG--~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~ns-Gi~~I~la~~y~s~sl~~~~~k~y~~~lgVei 85 (371)
T KOG1322|consen 9 SVKAIILVGG--YGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINS-GITKIVLATQYNSESLNRHLSKAYGKELGVEI 85 (371)
T ss_pred ceeEEEEecC--CCceeeceeccCCCcccccCcchhhHHHHHHHHhC-CCcEEEEEEecCcHHHHHHHHHHhhhccceEE
Confidence 5789999999 99999999999999999999999999999999985 99999999999888777777653 45678888
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHHHhhcccCCc-ceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQE-AVYFTLE--IR--SDV--VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~~~~i~~~~d-~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~ 244 (523)
.+..|.+++ |.+| ++++++ +++....+ + |+||| ++ +|+ |+++|++++ ++.|++++
T Consensus 86 ~~s~etepl------------gtaG--pl~laR-~~L~~~~~~~-ffVLnsDvi~~~p~~~~vqfH~~~g--ae~TI~~t 147 (371)
T KOG1322|consen 86 LASTETEPL------------GTAG--PLALAR-DFLWVFEDAP-FFVLNSDVICRMPYKEMVQFHRAHG--AEITIVVT 147 (371)
T ss_pred EEEeccCCC------------cccc--hHHHHH-HHhhhcCCCc-EEEecCCeeecCCHHHHHHHHHhcC--CceEEEEE
Confidence 888887765 4566 666665 55542223 6 99999 54 455 999999999 99999999
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccc
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 324 (523)
+++ +|++||.++.|+++|+|.+|.|||++..++.+++|+|+|+|++++.|+. + ..
T Consensus 148 ~vd--epSkyGvv~~d~~~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~-~----------------------pt 202 (371)
T KOG1322|consen 148 KVD--EPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILL-R----------------------PT 202 (371)
T ss_pred ecc--CccccceEEEecCCCceeEehhCchhhhhccccceEEEECHHHHhHhhh-c----------------------cc
Confidence 995 5899999999996799999999999999999999999999999988863 1 13
Q ss_pred cchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCCceEecCcEECCCCEECCCCEEC
Q psy17795 325 QLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAIVG 404 (523)
Q Consensus 325 ~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~ 404 (523)
+|+++++|.+++..+++++.++|||+|+|+|.||+.+...|++......|.++. +++.+.+++.+.+.+.++.+|.|+
T Consensus 203 SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~--p~~~i~~nvlvd~~~~iG~~C~Ig 280 (371)
T KOG1322|consen 203 SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLL--PGSKIVGNVLVDSIASIGENCSIG 280 (371)
T ss_pred chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCcccc--CCccccccEeeccccccCCccEEC
Confidence 488999999999999999999999999999999999999898876655555554 468889999999999999999999
Q ss_pred CCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeec
Q psy17795 405 PNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLN 484 (523)
Q Consensus 405 ~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~ 484 (523)
++++||++|+|++++.|.+|+|..+..++.++.|..+++|.++.||.++.|.+.
T Consensus 281 ~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~-------------------------- 334 (371)
T KOG1322|consen 281 PNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKN-------------------------- 334 (371)
T ss_pred CCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecc--------------------------
Confidence 999999999999999999999999999999999999999999999999988763
Q ss_pred CCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCC-CcccC
Q psy17795 485 PSITILGDGVTVPGELIVLNSIVLPYKELTRSFK-NEILL 523 (523)
Q Consensus 485 ~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~-~~~i~ 523 (523)
++||++++|.+.-.+.++.+.|++.+...++ +.+||
T Consensus 335 ---a~lG~nV~V~d~~~vn~g~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 335 ---AVLGKNVIVADEDYVNEGSGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred ---cEeccceEEecccccccceeEEeccceeecccccccC
Confidence 8889999998888887788889988888886 55543
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=413.71 Aligned_cols=339 Identities=27% Similarity=0.465 Sum_probs=281.9
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~ 172 (523)
.|+||||||| +||||+|||..+||||+||+|+|||+|+|+.|.+. |+++++|+++|..+++++||++. ..+++++.
T Consensus 1 ~mkavILagG--~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~-Gv~eivi~~~y~~~~i~~~~~d~-~~~~~~I~ 76 (358)
T COG1208 1 PMKAVILAGG--YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAA-GVEEIVLVVGYLGEQIEEYFGDG-EGLGVRIT 76 (358)
T ss_pred CceEEEEeCC--ccccccccccCCCcccceeCCccHHHHHHHHHHHC-CCcEEEEEeccchHHHHHHHhcc-cccCCceE
Confidence 3789999999 99999999999999999999999999999999986 99999999999999999999984 45688999
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cchH--H--HHHHHHhcCCcceEEEEEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRSD--V--VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~D--~--l~~~h~~~~~~~~~tv~~~ 244 (523)
|+.+.+++| ||++|+ .+++.. ++ |+++| +++| + ++++|+++. +.+++...
T Consensus 77 y~~e~~~lG-----------------Tag~l~~a~~~l~~--~~-f~v~~GDv~~~~dl~~l~~~~~~~~--~~~~~~~~ 134 (358)
T COG1208 77 YVVEKEPLG-----------------TAGALKNALDLLGG--DD-FLVLNGDVLTDLDLSELLEFHKKKG--ALATIALT 134 (358)
T ss_pred EEecCCcCc-----------------cHHHHHHHHHhcCC--Cc-EEEEECCeeeccCHHHHHHHHHhcc--CccEEEEE
Confidence 999999999 999999 777763 56 99999 5555 4 899999887 88888888
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCC--CcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcc
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPS--TFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFN 322 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~--~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 322 (523)
++. ++..||.+..++++++|.+|.|||. ...++++++|+|+|++++|+.+.. ..
T Consensus 135 ~~~--~~~~~Gvv~~~~~~~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~----------------------~~ 190 (358)
T COG1208 135 RVL--DPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEK----------------------GE 190 (358)
T ss_pred ecC--CCCcCceEEecCCCceEEEEEecCCCCCCCCceEEeEEEEECHHHhhhccc----------------------CC
Confidence 775 3478999988854369999999993 567899999999999999995433 13
Q ss_pred cccchhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccc-----cCCCceEecCcEECCCCE
Q psy17795 323 HIQLEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQ-----CSSQCKTIGDVYIHSSAS 396 (523)
Q Consensus 323 ~~~~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~-----~~~~~~i~~~~~i~~~~~ 396 (523)
..+|+.++++.+++.+. ++++.++++|.|+++|++|++++..+++........... ... +.+.++++|+++|.
T Consensus 191 ~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~ 269 (358)
T COG1208 191 RFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAK 269 (358)
T ss_pred cccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCE
Confidence 34566789999999998 999999999999999999999999998644322111111 012 78999999999999
Q ss_pred ECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCe
Q psy17795 397 VHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPL 476 (523)
Q Consensus 397 I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ 476 (523)
|++++.|+++++||++|.|++++.|.+|+|+++|.|++++.|.+|+||++|.||++. . +++ +.
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-~---------------i~d-~~ 332 (358)
T COG1208 270 IGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL-I---------------IGD-VV 332 (358)
T ss_pred ECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce-e---------------ecc-eE
Confidence 999999999999999999999999999999999999999999999999999999811 1 455 55
Q ss_pred ecCCCeecCCcEEeCCCCEECCCc
Q psy17795 477 FNSNGKLNPSITILGDGVTVPGEL 500 (523)
Q Consensus 477 ig~~~~i~~g~~iIG~~~~Ig~~~ 500 (523)
+|.++.+.+| ++++.++.++.+.
T Consensus 333 ~g~~~~i~~g-~~~~~~~~~~~~~ 355 (358)
T COG1208 333 IGINSEILPG-VVVGPGSVVESGE 355 (358)
T ss_pred ecCceEEcCc-eEeCCCccccCcc
Confidence 5555555555 4445444444443
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-49 Score=390.54 Aligned_cols=329 Identities=23% Similarity=0.359 Sum_probs=265.4
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe-
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI- 169 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~- 169 (523)
..+-|+|||+| +|+||.|||..++||-+|++|| .||+++|+++.++ |+++|.|+++|+.-.|.+|++.. ..|++
T Consensus 4 ~~~laiILaGg--~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNS-Gi~~I~VltQy~~~SL~~Hi~~G-~~w~l~ 79 (393)
T COG0448 4 KNVLAIILAGG--RGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNS-GIRRIGVLTQYKSHSLNDHIGRG-WPWDLD 79 (393)
T ss_pred cceEEEEEcCC--CCCccchhhhCccccccccCceeEEEeEEccccccc-CCCeEEEEeccchhHHHHHhhCC-Cccccc
Confidence 34669999999 9999999999999999999998 9999999999985 99999999999888999999985 55643
Q ss_pred ----eEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc----cchHH--HHHHHHhcCCc
Q psy17795 170 ----NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE----IRSDV--VILMHSLYSMA 236 (523)
Q Consensus 170 ----~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~----i~~D~--l~~~h~~~~~~ 236 (523)
.+.++..... ...+.||+| ||+|++ ..++. ..+|+ +||++ +.+|+ |+++|.+.+
T Consensus 80 ~~~~~v~ilp~~~~--------~~~~~wy~G--tadai~Qnl~~i~~~~~ey-vlIlsgDhIYkmDy~~ml~~H~~~g-- 146 (393)
T COG0448 80 RKNGGVFILPAQQR--------EGGERWYEG--TADAIYQNLLIIRRSDPEY-VLILSGDHIYKMDYSDMLDFHIESG-- 146 (393)
T ss_pred cccCcEEEeCchhc--------cCCCcceec--cHHHHHHhHHHHHhcCCCE-EEEecCCEEEecCHHHHHHHHHHcC--
Confidence 2444432211 123679999 999999 55555 56788 99998 55888 999999999
Q ss_pred ceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC-cccc-eeeeeEEEeeHHHHHHH-HHhhccccccccccccc
Q psy17795 237 ILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST-FVST-LVNCGVYLFSLDIFQNI-AAVFQSKQDEFYNGNYM 313 (523)
Q Consensus 237 ~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~-~~~~-l~~~Giyif~~~il~~l-~~~~~~~~~e~~~~~~~ 313 (523)
+++|+++.+++..++++||.+.+|++ ++|++|.|||.. +.++ ++++|+|+|+.++|..+ .+....
T Consensus 147 adiTv~~~~Vp~~eas~fGim~~D~~-~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~----------- 214 (393)
T COG0448 147 ADVTVAVKEVPREEASRFGVMNVDEN-GRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKD----------- 214 (393)
T ss_pred CCEEEEEEECChHhhhhcCceEECCC-CCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcc-----------
Confidence 99999999999889999999999998 999999999987 4444 89999999999976544 432211
Q ss_pred ccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhc------ccCCcccccC--CCceE
Q psy17795 314 VNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYK------TRHPERLQCS--SQCKT 385 (523)
Q Consensus 314 ~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~------~~~~~~~~~~--~~~~i 385 (523)
..+..+|..+++|.+.+++.+++|+++|||.|++|.++|++||+++++... ..+|.+.... |.+.+
T Consensus 215 ------~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~ 288 (393)
T COG0448 215 ------PNSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKF 288 (393)
T ss_pred ------cCccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceE
Confidence 124467889999999999999999999999999999999999999997321 1122221111 33333
Q ss_pred e-----cCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCC
Q psy17795 386 I-----GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 386 ~-----~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~ 458 (523)
. .++.|+.+|+|.. .| .+++|+.++.|+++|+|.+|+|+.+|.||++|+|.++||+++|.|++|++|++.
T Consensus 289 ~~~s~v~nSLv~~GciI~G--~V-~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 289 VNDSEVSNSLVAGGCIISG--TV-ENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred ecCceEeeeeeeCCeEEEe--EE-EeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 3 3344555555554 33 688999999999999999999999999999999999999999999999999875
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=388.87 Aligned_cols=321 Identities=19% Similarity=0.296 Sum_probs=229.0
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~ 169 (523)
|-+|+||||||| +||||+|||..+||||+||+|+ |||+|+|++|.+. |+++|+|+++|+.+++++|+++. .+|++
T Consensus 1 ~~~m~avILAaG--~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~ 76 (380)
T PRK05293 1 KKEMLAMILAGG--QGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANS-GIDTVGVLTQYQPLELNNHIGIG-SPWDL 76 (380)
T ss_pred CCcEEEEEECCC--CCcccchhhcCCccceeeeCCceeehhHHHHHHHhC-CCCEEEEEecCCHHHHHHHHhCC-Ccccc
Confidence 346999999999 9999999999999999999999 8999999999996 99999999999999999999763 44653
Q ss_pred e-----EEE----EecccccchhhhhcccccccccCCCchhHHH--Hhhccc-CCcceEEEEc--cc--hHH--HHHHHH
Q psy17795 170 N-----IRY----LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW-VQEAVYFTLE--IR--SDV--VILMHS 231 (523)
Q Consensus 170 ~-----i~~----~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~-~~d~~~Lvl~--i~--~D~--l~~~h~ 231 (523)
+ +.+ ..+.+ .+|+.| ||+|++ ++++.. .+++ |||++ .+ .|+ +++.|+
T Consensus 77 ~~~~~~~~i~~~~~~~~~------------~~~~~G--ta~al~~a~~~l~~~~~~~-~lV~~gD~l~~~d~~~ll~~h~ 141 (380)
T PRK05293 77 DRINGGVTILPPYSESEG------------GKWYKG--TAHAIYQNIDYIDQYDPEY-VLILSGDHIYKMDYDKMLDYHK 141 (380)
T ss_pred cCCCCCEEEeCCcccCCC------------CcccCC--cHHHHHHHHHHHHhCCCCE-EEEecCCEEEcCCHHHHHHHHH
Confidence 2 222 22211 235556 999999 777752 2356 88888 44 345 788888
Q ss_pred hcCCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHH-HHHhhcccccccccc
Q psy17795 232 LYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQN-IAAVFQSKQDEFYNG 310 (523)
Q Consensus 232 ~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~-l~~~~~~~~~e~~~~ 310 (523)
+.+ +++|+++...+.+++.+||.+..|++ ++|.+|.|||..+.++++++|+|+|++++|.. +.+.....
T Consensus 142 ~~~--~~~tl~~~~~~~~~~~~yG~v~~d~~-g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~------- 211 (380)
T PRK05293 142 EKE--ADVTIAVIEVPWEEASRFGIMNTDEN-MRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNP------- 211 (380)
T ss_pred hcC--CCEEEEEEEcchhhccccCEEEECCC-CcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcC-------
Confidence 877 78888877665456789999999876 89999999998777889999999999998754 43321111
Q ss_pred cccccCCCCCcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCCceEecCc
Q psy17795 311 NYMVNGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDV 389 (523)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~~~i~~~~ 389 (523)
....+|.+|+++.+++++ +++++..+++|.|++++++|+++++.++....... ... +...+.+.+
T Consensus 212 ----------~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~--~~~--~~~~~~~~~ 277 (380)
T PRK05293 212 ----------NSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLN--LFD--RNWRIYSVN 277 (380)
T ss_pred ----------CchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhh--hcC--CCCceecCC
Confidence 122345579999999876 49999999999999999999999998885422110 000 011222223
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
.+.+.+.|++++.| .++.||++|.|+. .+.+|+||++|.||++|+|.+|+|+++|.|+++|.|.+
T Consensus 278 ~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~ 342 (380)
T PRK05293 278 PNLPPQYIAENAKV-KNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIER 342 (380)
T ss_pred cCCCCCEECCCCEE-ecCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeE
Confidence 33334444444444 3455556665542 34556666666666666666666666666666666644
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=386.88 Aligned_cols=358 Identities=16% Similarity=0.290 Sum_probs=261.9
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccC-
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYK- 168 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~- 168 (523)
|..|+||||||| +|+||+|||..+||||+||+|+ |||+|+|+++.++ |+++|+|++++..+++.+|+.+.+ .|+
T Consensus 1 ~~~~~aIIlA~G--~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~l~~~~-~~~~ 76 (436)
T PLN02241 1 PKSVAAIILGGG--AGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINS-GINKIYVLTQFNSASLNRHLSRAY-NFGN 76 (436)
T ss_pred CCceEEEEEeCC--CCCcchhhhcCCcccceEeCCcceEehHHHHHHHhC-CCCEEEEEeccCHHHHHHHHhccC-CCCC
Confidence 457899999999 9999999999999999999997 9999999999996 999999999999999999998631 122
Q ss_pred --------eeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccC----CcceEEEEc--cc--hHH--HHH
Q psy17795 169 --------INIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWV----QEAVYFTLE--IR--SDV--VIL 228 (523)
Q Consensus 169 --------~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~----~d~~~Lvl~--i~--~D~--l~~ 228 (523)
+.+.+..+.+. ...|+.| |+++++ +.++... .++ ||+++ .+ .|+ +++
T Consensus 77 ~~~~~~~~~~i~~~~q~~~----------~~~~~lG--t~~al~~~~~~~~~~~~~~~~~-~lv~~gD~v~~~dl~~ll~ 143 (436)
T PLN02241 77 GGNFGDGFVEVLAATQTPG----------EKGWFQG--TADAVRQFLWLFEDAKNKNVEE-VLILSGDHLYRMDYMDFVQ 143 (436)
T ss_pred CcccCCCCEEEcCCcccCC----------CCccccC--cHHHHHHHHHHHHhcccCCCCE-EEEecCCeEEccCHHHHHH
Confidence 22212222110 0124445 999998 5555421 367 89988 43 455 889
Q ss_pred HHHhcCCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcc---------------------cceeeeeEEE
Q psy17795 229 MHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFV---------------------STLVNCGVYL 287 (523)
Q Consensus 229 ~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~---------------------~~l~~~Giyi 287 (523)
+|++.+ +++|+++.+++.+++.+||++.+|++ ++|.+|.|||..+. .+++++|+|+
T Consensus 144 ~h~~~~--a~~ti~~~~v~~~~~~~ygvv~~d~~-~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi 220 (436)
T PLN02241 144 KHRESG--ADITIACLPVDESRASDFGLMKIDDT-GRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYV 220 (436)
T ss_pred HHHHcC--CCEEEEEEecchhhcCcceEEEECCC-CCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEE
Confidence 999888 88999998886556789999999876 89999999986432 3799999999
Q ss_pred eeHHHHHHH-HHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHH
Q psy17795 288 FSLDIFQNI-AAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 288 f~~~il~~l-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~ 365 (523)
|++++|..+ .+.+.. ..+|.+|+++.++++| ++++|.+++||.|++++++|+++++.+
T Consensus 221 ~~~~~l~~ll~~~~~~--------------------~~~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~ 280 (436)
T PLN02241 221 FKKDVLLKLLRWRFPT--------------------ANDFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLAL 280 (436)
T ss_pred EEHHHHHHHHHhhccc--------------------ccchhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHH
Confidence 999998644 432211 1246689999999886 599999999999999999999999999
Q ss_pred Hhhhcc---cCCc-cccc----C-----CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECC----
Q psy17795 366 LQLYKT---RHPE-RLQC----S-----SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQ---- 428 (523)
Q Consensus 366 l~~~~~---~~~~-~~~~----~-----~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~---- 428 (523)
+..... ..+. .+.. . .++.+.+ +.|+++|.|+ ++.| .+++|+++|.|+++|.|.+++|+.
T Consensus 281 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~-s~I~~~~~I~-~~~I-~~svI~~~~~Ig~~~~I~~sii~g~~~~ 357 (436)
T PLN02241 281 TKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITD-SIISHGCFLR-ECKI-EHSVVGLRSRIGEGVEIEDTVMMGADYY 357 (436)
T ss_pred hcCCchhhccCCCCcccccCCCCCCcEecCCeEEE-eEEcCCcEEc-CeEE-EeeEEcCCCEECCCCEEEEeEEECCCcc
Confidence 864211 0000 0000 0 1233433 6788888888 8888 467888899998888888877644
Q ss_pred ------------C---CEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCC
Q psy17795 429 ------------G---ASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDG 493 (523)
Q Consensus 429 ------------~---~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~ 493 (523)
+ +.||++|.|.+++|+++|.||+++.|.+... ..++.++|++ +++..|+++||++
T Consensus 358 ~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~----~~~~~~~~~~------~~~~~~~~~i~~~ 427 (436)
T PLN02241 358 ETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDG----VQEADREEEG------YYIRSGIVVILKN 427 (436)
T ss_pred ccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEEecccc----cCCccccccc------cEEeCCEEEEcCC
Confidence 2 3788888888888988999998888865311 1122333443 3333443566777
Q ss_pred CEECCCcE
Q psy17795 494 VTVPGELI 501 (523)
Q Consensus 494 ~~Ig~~~~ 501 (523)
+.|++|++
T Consensus 428 ~~~~~~~~ 435 (436)
T PLN02241 428 AVIPDGTV 435 (436)
T ss_pred cEeCCCCC
Confidence 77766664
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=382.25 Aligned_cols=331 Identities=21% Similarity=0.298 Sum_probs=255.7
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~ 169 (523)
|-+|+||||||| +||||+|||..+||||+||+|+ |||+|+|++|.++ |+++|+|+++|..+++.+|+...+...+.
T Consensus 3 ~~~~~avILAaG--~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~ 79 (407)
T PRK00844 3 MPKVLAIVLAGG--EGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNS-GYLRIYVLTQYKSHSLDRHISQTWRLSGL 79 (407)
T ss_pred CCceEEEEECCC--CCCccchhhcCCcccceeeCCcceEhHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHHhCcCcccc
Confidence 446899999999 9999999999999999999999 9999999999996 99999999999999999999752110122
Q ss_pred eEEEEec---ccccchhhhhcccccccccCCCchhHHH--Hhhccc-CCcceEEEEc--cc--hHH--HHHHHHhcCCcc
Q psy17795 170 NIRYLQE---FWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW-VQEAVYFTLE--IR--SDV--VILMHSLYSMAI 237 (523)
Q Consensus 170 ~i~~~~~---~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~-~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~ 237 (523)
.+.++.. .+..+ ..|..| ||+|++ ++++.+ ..++ |||++ .+ .|+ ++++|++.+ +
T Consensus 80 ~~~~~~~~~~~~~~~---------~~~~lG--ta~al~~a~~~i~~~~~~~-~lv~~gD~v~~~dl~~l~~~h~~~~--~ 145 (407)
T PRK00844 80 LGNYITPVPAQQRLG---------KRWYLG--SADAIYQSLNLIEDEDPDY-VVVFGADHVYRMDPRQMVDFHIESG--A 145 (407)
T ss_pred CCCeEEECCcccCCC---------CCcccC--CHHHHHHHHHHHHhcCCCE-EEEecCCEEEcCCHHHHHHHHHhcC--C
Confidence 2333321 11111 234445 999999 778763 2356 88888 44 345 889998887 8
Q ss_pred eEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcc-------cceeeeeEEEeeHHHH-HHHHHhhccccccccc
Q psy17795 238 LVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFV-------STLVNCGVYLFSLDIF-QNIAAVFQSKQDEFYN 309 (523)
Q Consensus 238 ~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~-------~~l~~~Giyif~~~il-~~l~~~~~~~~~e~~~ 309 (523)
++|+++.+++.+++..||.+..|++ ++|.+|.|||.... +.++++|+|+|++++| +.|.+......
T Consensus 146 ~~ti~~~~~~~~~~~~~Gvv~~d~~-g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~----- 219 (407)
T PRK00844 146 GVTVAAIRVPREEASAFGVIEVDPD-GRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADED----- 219 (407)
T ss_pred cEEEEEEecchHHcccCCEEEECCC-CCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCc-----
Confidence 8898887765456789999999986 89999999986432 5799999999999986 55654322111
Q ss_pred ccccccCCCCCcccccchhhhhhhhhcCCcEEEEEc------------chhHhhhccchhhhhccHHHHhhhccc-----
Q psy17795 310 GNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQT------------SKWWSQLKSAGSAIYANRHYLQLYKTR----- 372 (523)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~------------~g~w~dIgt~~dyl~an~~~l~~~~~~----- 372 (523)
+..++.+|+++.+++++.+++|.+ .+||.|++++++|+++++.+|......
T Consensus 220 ------------~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~ 287 (407)
T PRK00844 220 ------------SSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNR 287 (407)
T ss_pred ------------ccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCC
Confidence 223455799999999998999965 599999999999999999999642111
Q ss_pred -CCcccc--cC-CCc--------eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEec
Q psy17795 373 -HPERLQ--CS-SQC--------KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLN 440 (523)
Q Consensus 373 -~~~~~~--~~-~~~--------~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~ 440 (523)
.+.... .. +.. .+.++++|+++|.|+ ++.|. +++||++|.|+++|.|.+|+|+++|.|+++|+|.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~ 365 (407)
T PRK00844 288 EWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR 365 (407)
T ss_pred CCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe
Confidence 010000 00 111 244578889999998 88884 69999999999999999999999999999999999
Q ss_pred eEECCCCEECCCcEEcCC
Q psy17795 441 SIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 441 ~iIg~~~~Ig~~~~i~~~ 458 (523)
|+|++++.|++++++.+.
T Consensus 366 ~ii~~~~~i~~~~~i~~~ 383 (407)
T PRK00844 366 AILDKNVVVPPGATIGVD 383 (407)
T ss_pred eEECCCCEECCCCEECCC
Confidence 999999999999999763
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=368.52 Aligned_cols=310 Identities=23% Similarity=0.307 Sum_probs=239.3
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCeeEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|||||||| +|+||+|+|..+||||+|++|+|||+|+|+++.+. ++++++|++++ ..+.+.+|+.+. ..|++++.+
T Consensus 1 kaiIlAaG--~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~i~~~~~~~-~~~~~~~~~ 76 (353)
T TIGR01208 1 KALILAAG--KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEA-GITDIGIVVGPVTGEEIKEIVGEG-ERFGAKITY 76 (353)
T ss_pred CEEEECCc--CcCccCccccCCCccccEECCEeHHHHHHHHHHHC-CCCEEEEEeCCCCHHHHHHHHhcc-cccCceEEE
Confidence 58999999 99999999999999999999999999999999996 99999999999 899999999863 457878878
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEEe
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
+.+.+++| |+++++ ++++. .++ |++++ .+ .|+ ++++|++.+ +++++++.+
T Consensus 77 ~~~~~~~G-----------------~~~al~~a~~~l~--~~~-~li~~gD~~~~~~l~~l~~~~~~~~--~d~ti~~~~ 134 (353)
T TIGR01208 77 IVQGEPLG-----------------LAHAVYTARDFLG--DDD-FVVYLGDNLIQDGISRFVKSFEEKD--YDALILLTK 134 (353)
T ss_pred EECCCCCC-----------------HHHHHHHHHHhcC--CCC-EEEEECCeecCccHHHHHHHHHhcC--CCcEEEEEE
Confidence 77766777 999999 77775 245 78777 32 444 788888877 888988887
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccccc
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQ 325 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 325 (523)
.+ ++..||.+..|++ ++|.+|.|||....++++++|+|+|++.+++.|.+.....++||++
T Consensus 135 ~~--~~~~~g~~~~~~~-~~v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l---------------- 195 (353)
T TIGR01208 135 VR--DPTAFGVAVLEDG-KRILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEI---------------- 195 (353)
T ss_pred CC--ChhhCeEEEEcCC-CcEEEEEECCCCCCccceEEEEEEECHHHHHHHHhcCCCCCCcEEH----------------
Confidence 64 4678998888754 7899999999877788999999999998888886543322345543
Q ss_pred chhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCCceEecCcEECCCCEECCCCEEC
Q psy17795 326 LEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAIVG 404 (523)
Q Consensus 326 ~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~ 404 (523)
+++++.+++.| ++++|.++++|.+++++++|+++++.++......... + .+.+.+.++++|++++.| +++.|+
T Consensus 196 --~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~~~~-i--~~~~~i~~~~~i~~~~~i-~~~~i~ 269 (353)
T TIGR01208 196 --TDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQG-V--DDESKIRGRVVVGEGAKI-VNSVIR 269 (353)
T ss_pred --HHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccccCC-c--CCCCEEcCCEEECCCCEE-eCCEEE
Confidence 68999999887 4999999999999999999999999999753211110 1 135667777888888777 566676
Q ss_pred CCcEECCCCEECCCCEE-eeeEECCCCEECCCCEEeceEECCCCEECCCc-EEcC
Q psy17795 405 PNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRNSKVGNWS-RVEG 457 (523)
Q Consensus 405 ~~~~Ig~~~~I~~~~~I-~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~-~i~~ 457 (523)
++++||++|.|+ ++.| .+|+||++|.|+ +|.|.+|+|++++.|+.++ .+.+
T Consensus 270 ~~~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~ 322 (353)
T TIGR01208 270 GPAVIGEDCIIE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVD 322 (353)
T ss_pred CCcEECCCCEEc-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeec
Confidence 667777777776 3333 345556666555 4555566666666666553 5443
|
Alternate name: dTDP-D-glucose synthase |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=351.55 Aligned_cols=372 Identities=22% Similarity=0.311 Sum_probs=284.3
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~ 172 (523)
.|.+|||||| +||||++ ..||.|.+++||||++|.++....+ +.+++++|.++..+.+++.+.+. . ++.
T Consensus 2 ~~~~vILAAG--kGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l-~~~~i~vVvGh~ae~V~~~~~~~----~-~v~ 70 (460)
T COG1207 2 SLSAVILAAG--KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARAL-GPDDIVVVVGHGAEQVREALAER----D-DVE 70 (460)
T ss_pred CceEEEEecC--CCccccC---CCcccchhccCccHHHHHHHHHhhc-CcceEEEEEcCCHHHHHHHhccc----c-Cce
Confidence 4569999999 9999999 9999999999999999999999987 99999999999999999999862 1 578
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc-----cchHH---HHHHHHhcCCcceEEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE-----IRSDV---VILMHSLYSMAILVTV 241 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~-----i~~D~---l~~~h~~~~~~~~~tv 241 (523)
|+.|.+++| |++|++ ++++. +.+.+ +||++ +-.+. +++.|...+ +.+++
T Consensus 71 ~v~Q~eqlG-----------------TgHAV~~a~~~l~~~~~g~-vLVl~GD~PLit~~TL~~L~~~~~~~~--~~~tv 130 (460)
T COG1207 71 FVLQEEQLG-----------------TGHAVLQALPALADDYDGD-VLVLYGDVPLITAETLEELLAAHPAHG--AAATV 130 (460)
T ss_pred EEEecccCC-----------------hHHHHHhhhhhhhcCCCCc-EEEEeCCcccCCHHHHHHHHHhhhhcC--CceEE
Confidence 899999999 999999 88884 44456 89988 22344 777888777 88999
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecCC----CcccceeeeeEEEeeHH-HHHHHHHhhccc-cccccccccccc
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKPS----TFVSTLVNCGVYLFSLD-IFQNIAAVFQSK-QDEFYNGNYMVN 315 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~----~~~~~l~~~Giyif~~~-il~~l~~~~~~~-~~e~~~~~~~~~ 315 (523)
++...+ +|..||.+..+++ |+|..|.|..+ +..-..+|+|+|+|+.. ++++|.++-..+ ++|||+
T Consensus 131 Lt~~~~--dP~GYGRIvr~~~-g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYL------ 201 (460)
T COG1207 131 LTAELD--DPTGYGRIVRDGN-GEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYL------ 201 (460)
T ss_pred EEEEcC--CCCCcceEEEcCC-CcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeH------
Confidence 998874 7899999999987 89999999743 33567899999999977 566676655555 899998
Q ss_pred CCCCCcccccchhhhhhhhhcCCc-EEEEEcchhHh--hhccchhhhhccHHHHhh---------hcccCCcccccCCCc
Q psy17795 316 GKDTDFNHIQLEKEIIMPLAGSGK-AYVYQTSKWWS--QLKSAGSAIYANRHYLQL---------YKTRHPERLQCSSQC 383 (523)
Q Consensus 316 ~~~~~~~~~~~~~dil~~li~~g~-v~~~~~~g~w~--dIgt~~dyl~an~~~l~~---------~~~~~~~~~~~~~~~ 383 (523)
+|++..+...|. +.++..++++. -+++-..+-++.+.|.++ .....| .+.
T Consensus 202 ------------TDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP------~t~ 263 (460)
T COG1207 202 ------------TDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDP------ATT 263 (460)
T ss_pred ------------HHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCC------CeE
Confidence 799998887775 88888776654 344444555555544433 222333 356
Q ss_pred eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC----
Q psy17795 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP---- 459 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~---- 459 (523)
.|.+.+.|++++.|.|++.|.+++.||++|+||++|+|.+|.|++++.|..+|+|++|.||++|.||+.+.+.+..
T Consensus 264 ~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~ 343 (460)
T COG1207 264 YIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGA 343 (460)
T ss_pred EEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccC
Confidence 7888888999999999998888899999999999988888888888888888888888888888888877774422
Q ss_pred --------------CCCCCCCCce------ecCCCCeecCCCee------cCCcEEeCCCCEECCCcEE-------eCeE
Q psy17795 460 --------------CDPNPNKAFA------KMDNPPLFNSNGKL------NPSITILGDGVTVPGELIV-------LNSI 506 (523)
Q Consensus 460 --------------~~~~~~~~~v------~I~~~~~ig~~~~i------~~g~~iIG~~~~Ig~~~~i-------~~~~ 506 (523)
++....-+|. .||.++-||++..- ..-.|+||++++||.++.+ .++.
T Consensus 344 ~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~ 423 (460)
T COG1207 344 DVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGAT 423 (460)
T ss_pred CCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcE
Confidence 1111111121 23333334433311 1124788999999999866 4678
Q ss_pred EcCCcEeCCCCCCccc
Q psy17795 507 VLPYKELTRSFKNEIL 522 (523)
Q Consensus 507 v~~~~~i~~~~~~~~i 522 (523)
|+.+++|+++||...+
T Consensus 424 iaAGStIT~DVp~~aL 439 (460)
T COG1207 424 IAAGSTITKDVPEGAL 439 (460)
T ss_pred EcccceEcccCCCCce
Confidence 8899999999996654
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=376.20 Aligned_cols=327 Identities=18% Similarity=0.291 Sum_probs=247.0
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh--cc
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ--EY 167 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~--~~ 167 (523)
|..++||||||| +||||+|||..+||||+||+|+ |||+|+|++|.++ |+++|+|++++..+++++|+.+... .+
T Consensus 1 m~~~~AVILAaG--~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~-Gi~~vivv~~~~~~~i~~~l~~~~~~~~~ 77 (429)
T PRK02862 1 MKRVLAIILGGG--AGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINS-GINKIYVLTQFNSASLNRHISQTYNFDGF 77 (429)
T ss_pred CCcEEEEEECCC--CCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHC-CCCEEEEEecCCHHHHHHHHhcCcCcccc
Confidence 345789999999 9999999999999999999999 9999999999996 9999999999999999999975210 00
Q ss_pred Cee-EEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--cc--hHH--HHHHHHhcCCcc
Q psy17795 168 KIN-IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--IR--SDV--VILMHSLYSMAI 237 (523)
Q Consensus 168 ~~~-i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~ 237 (523)
... +.+....+.. ....|+.| ||+|++ ++++. ..+++ |||++ .+ .|+ ++++|++.+ +
T Consensus 78 ~~g~~~i~~~~~~~--------~~~~~~lG--Ta~al~~a~~~l~~~~~~~-~lVl~gD~l~~~dl~~ll~~h~~~~--a 144 (429)
T PRK02862 78 SGGFVEVLAAQQTP--------ENPSWFQG--TADAVRKYLWHFQEWDVDE-YLILSGDQLYRMDYRLFVQHHRETG--A 144 (429)
T ss_pred CCCEEEEeCCcccC--------CCCccccC--cHHHHHHHHHHHHhcCCCE-EEEecCCEEEeCCHHHHHHHHHHcC--C
Confidence 001 2122111100 01234455 999999 77775 22467 99988 33 455 888998887 8
Q ss_pred eEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc---------------------ccceeeeeEEEeeHHHHHHH
Q psy17795 238 LVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF---------------------VSTLVNCGVYLFSLDIFQNI 296 (523)
Q Consensus 238 ~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~---------------------~~~l~~~Giyif~~~il~~l 296 (523)
++|+++.+.+.+++..||.+..|++ ++|.+|.|||... ..+++++|+|+|++++|..+
T Consensus 145 ~~tl~~~~~~~~~~~~yG~i~~d~~-g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~ 223 (429)
T PRK02862 145 DITLAVLPVDEKDASGFGLMKTDDD-GRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDL 223 (429)
T ss_pred CEEEEEEecChhhcccceEEEECCC-CcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHH
Confidence 8899888765556789999999876 8999999998632 23589999999999998644
Q ss_pred -HHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcc---c
Q psy17795 297 -AAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKT---R 372 (523)
Q Consensus 297 -~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~---~ 372 (523)
.+.. +..++..++++.+++.+++++|..++||.|++++++|+++++.++..... .
T Consensus 224 l~~~~---------------------~~~~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~ 282 (429)
T PRK02862 224 LNKNP---------------------EYTDFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSF 282 (429)
T ss_pred HHHCC---------------------ChhhhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccc
Confidence 3311 12356679999998888899999999999999999999999998832110 0
Q ss_pred -CCcc-cc----cCC-----CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECC-------------
Q psy17795 373 -HPER-LQ----CSS-----QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQ------------- 428 (523)
Q Consensus 373 -~~~~-~~----~~~-----~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~------------- 428 (523)
.+.. +. ..+ .+.+. ++.|+++|.| +++.| .+++||++|.|+++|.|.+|+|+.
T Consensus 283 ~~~~~~i~~~~~~~~~a~~~~~~~~-~~~ig~~~~i-~~~~i-~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~ 359 (429)
T PRK02862 283 YDEKAPIYTRARYLPPSKLLDATIT-ESIIAEGCII-KNCSI-HHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREEL 359 (429)
T ss_pred cCCCCceeccCCCCCCccccccEEE-eCEECCCCEE-CCcEE-EEEEEeCCcEECCCCEEEeeEEecCcccccccccccc
Confidence 0000 00 001 23333 4788888888 77888 468999999999999998888865
Q ss_pred ------CCEECCCCEEeceEECCCCEECCCcEEcCC
Q psy17795 429 ------GASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 429 ------~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~ 458 (523)
++.||++|.|.+++|+++|.||++|+|.+.
T Consensus 360 ~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~ 395 (429)
T PRK02862 360 RKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNK 395 (429)
T ss_pred cccCCcccEECCCCEEEEEEECCCcEECCCcEEecC
Confidence 688999999999999999999999998654
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=370.50 Aligned_cols=378 Identities=17% Similarity=0.215 Sum_probs=282.1
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCee
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~ 170 (523)
|.+++||||||| .|+||++ ..||||+|++|+|||+|+|+++.++ +++++++++++..+++.+++.+. ..
T Consensus 1 m~~~~avIlAaG--~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~-gi~~iiiv~~~~~~~i~~~~~~~-----~~ 69 (459)
T PRK14355 1 MNNLAAIILAAG--KGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREA-GAGRIVLVVGHQAEKVREHFAGD-----GD 69 (459)
T ss_pred CCcceEEEEcCC--CCcccCC---CCCceeceeCCccHHHHHHHHHHhc-CCCeEEEEECCCHHHHHHHhccC-----Cc
Confidence 345789999999 9999986 8899999999999999999999986 99999999999888999998752 14
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c--c--hHH--HHHHHHhcCCcceEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I--R--SDV--VILMHSLYSMAILVT 240 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i--~--~D~--l~~~h~~~~~~~~~t 240 (523)
+.++.+.+++| ++++++ ++++....++ ||+++ . + .++ +++.|+..+ ++++
T Consensus 70 i~~~~~~~~~G-----------------t~~al~~a~~~l~~~~~~-vlv~~gD~p~~~~~~i~~l~~~~~~~~--~~~~ 129 (459)
T PRK14355 70 VSFALQEEQLG-----------------TGHAVACAAPALDGFSGT-VLILCGDVPLLRAETLQGMLAAHRATG--AAVT 129 (459)
T ss_pred eEEEecCCCCC-----------------HHHHHHHHHHHhhccCCc-EEEEECCccCcCHHHHHHHHHHHHhcC--CcEE
Confidence 66666777777 999999 7777532456 88887 2 2 244 778887766 7788
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC----cccceeeeeEEEeeHHH-HHHHHHhhccc-ccccccccccc
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST----FVSTLVNCGVYLFSLDI-FQNIAAVFQSK-QDEFYNGNYMV 314 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~----~~~~l~~~Giyif~~~i-l~~l~~~~~~~-~~e~~~~~~~~ 314 (523)
++..+.. ++..||.+..|++ ++|.++.|||.. ..++++++|+|+|++++ ++.+....... .+|+++
T Consensus 130 v~~~~~~--~~~~~g~v~~d~~-g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~----- 201 (459)
T PRK14355 130 VLTARLE--NPFGYGRIVRDAD-GRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYL----- 201 (459)
T ss_pred EEEEEcC--CCCcCCEEEEcCC-CCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeH-----
Confidence 8777653 4578999888876 899999988632 13478999999999986 45565433221 233433
Q ss_pred cCCCCCcccccchhhhhhhhhcCCc-EEEEEcchh--HhhhccchhhhhccHHHHhhhcc-c--CCcccccCCC-ceEec
Q psy17795 315 NGKDTDFNHIQLEKEIIMPLAGSGK-AYVYQTSKW--WSQLKSAGSAIYANRHYLQLYKT-R--HPERLQCSSQ-CKTIG 387 (523)
Q Consensus 315 ~~~~~~~~~~~~~~dil~~li~~g~-v~~~~~~g~--w~dIgt~~dyl~an~~~l~~~~~-~--~~~~~~~~~~-~~i~~ 387 (523)
+|+++.++++|. +.+|.++++ |.+++++++|+++++.++..... . ...... .+. ..|++
T Consensus 202 -------------~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i-~~~~~~i~~ 267 (459)
T PRK14355 202 -------------TDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLI-DPETTYIDR 267 (459)
T ss_pred -------------HHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEE-CCCceEECC
Confidence 799999998885 999999887 88999999999998766543211 1 011111 133 46889
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC-------C
Q psy17795 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP-------C 460 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~-------~ 460 (523)
++.|++++.|++++.|+++++||++|.|+++|+|.+|+||++|.|+++|+|.+++|++++.||+++.+.... +
T Consensus 268 ~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i 347 (459)
T PRK14355 268 GVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKI 347 (459)
T ss_pred CeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999888888776664311 1
Q ss_pred CCCCC-----------------CCceecCCCCeecCCCeec------CCcEEeCCCCEECCCcEE-------eCeEEcCC
Q psy17795 461 DPNPN-----------------KAFAKMDNPPLFNSNGKLN------PSITILGDGVTVPGELIV-------LNSIVLPY 510 (523)
Q Consensus 461 ~~~~~-----------------~~~v~I~~~~~ig~~~~i~------~g~~iIG~~~~Ig~~~~i-------~~~~v~~~ 510 (523)
+.+.. -+.+.|++++.||+++.+. .+.++||++|.||.+++| .+++|+++
T Consensus 348 g~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~ 427 (459)
T PRK14355 348 GNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAG 427 (459)
T ss_pred CCCccccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCC
Confidence 11110 1234566777777665331 112566777777777655 45677777
Q ss_pred cEeCCCCCCcc
Q psy17795 511 KELTRSFKNEI 521 (523)
Q Consensus 511 ~~i~~~~~~~~ 521 (523)
+.|..++|+..
T Consensus 428 s~v~~~v~~~~ 438 (459)
T PRK14355 428 TTVTKDVPPDS 438 (459)
T ss_pred CEEcccCCCCc
Confidence 77777877544
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=369.23 Aligned_cols=376 Identities=18% Similarity=0.247 Sum_probs=267.6
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|.|+||||||| +|+||++ ..||+|+|++|+|||+|+|++|.+. ++++|+|++++..+.+++++.. . ++
T Consensus 6 ~~~~avILAaG--~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~----~--~i 73 (481)
T PRK14358 6 RPLDVVILAAG--QGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDL-GARKIVVVTGHGAEQVEAALQG----S--GV 73 (481)
T ss_pred CCceEEEECCC--CCCcCCC---CCCceecEECCeeHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhcc----C--Cc
Confidence 46889999999 9999998 6899999999999999999999986 9999999999988889888864 2 36
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cch--HH--HHHHHHhcCCcceEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IRS--DV--VILMHSLYSMAILVTV 241 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~~--D~--l~~~h~~~~~~~~~tv 241 (523)
.++.+++++| |+++++ .+++....++ |++++ ++. ++ ++++|++.+ +.+|+
T Consensus 74 ~~v~~~~~~G-----------------t~~al~~~~~~l~~~~~~-~lV~~gD~P~i~~~~l~~ll~~~~~~~--~~~ti 133 (481)
T PRK14358 74 AFARQEQQLG-----------------TGDAFLSGASALTEGDAD-ILVLYGDTPLLRPDTLRALVADHRAQG--SAMTI 133 (481)
T ss_pred EEecCCCcCC-----------------cHHHHHHHHHHhhCCCCc-EEEEeCCeeccCHHHHHHHHHHHHhcC--CeEEE
Confidence 6777766777 999998 6676522356 78877 232 33 778888777 88888
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHHHHHHHhhcc-cccccccccccccC
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIFQNIAAVFQS-KQDEFYNGNYMVNG 316 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il~~l~~~~~~-~~~e~~~~~~~~~~ 316 (523)
++.+++ ++.+||.+..|++ ++|.+|.|||... ..+++++|+|+|++++++.++..... ..+||+
T Consensus 134 ~~~~~~--~~~~yG~v~~d~~-g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~-------- 202 (481)
T PRK14358 134 LTGELP--DATGYGRIVRGAD-GAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYY-------- 202 (481)
T ss_pred EEEEcC--CCCCceEEEECCC-CCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEE--------
Confidence 887775 4567999999877 8999999998643 24578999999998776655543221 123443
Q ss_pred CCCCcccccchhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHH-HHhh-hc-cc-CC-cccccCCCceEecCcE
Q psy17795 317 KDTDFNHIQLEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRH-YLQL-YK-TR-HP-ERLQCSSQCKTIGDVY 390 (523)
Q Consensus 317 ~~~~~~~~~~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~-~l~~-~~-~~-~~-~~~~~~~~~~i~~~~~ 390 (523)
+ +|+++.+++++. +++|...++|..++...+++.++.. +++. .. .. .. ......+...+.+++.
T Consensus 203 ---------l-~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 272 (481)
T PRK14358 203 ---------L-TDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVT 272 (481)
T ss_pred ---------H-HHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcE
Confidence 3 699999998885 9999999999888887777555543 3322 10 00 00 0011112234567778
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEc--------------
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE-------------- 456 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~-------------- 456 (523)
||+++.|++++.|.+++.||++|.|+++|.|++|+||++|.|+++++|.+++||+++.||+++.+.
T Consensus 273 Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~ 352 (481)
T PRK14358 273 LGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNF 352 (481)
T ss_pred ECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCC
Confidence 888888888888877888888888888888877778877777777777666666666666655553
Q ss_pred ----CCCCCCCCC------CCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCCcEe
Q psy17795 457 ----GTPCDPNPN------KAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPYKEL 513 (523)
Q Consensus 457 ----~~~~~~~~~------~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i 513 (523)
++.+..... -+.+.||++|.||.++++.. ..++||++|.||+++++ .+++|++++.|
T Consensus 353 ~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 353 VETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred EEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 211111111 13467788888887776643 23677888888888766 34556666667
Q ss_pred CCCCCCc
Q psy17795 514 TRSFKNE 520 (523)
Q Consensus 514 ~~~~~~~ 520 (523)
.+++|..
T Consensus 433 ~~~v~~~ 439 (481)
T PRK14358 433 HDDVPEG 439 (481)
T ss_pred ecccCCC
Confidence 7777643
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=368.19 Aligned_cols=333 Identities=16% Similarity=0.245 Sum_probs=252.8
Q ss_pred cccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcc-hHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhc--
Q psy17795 90 VSCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLP-MIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQE-- 166 (523)
Q Consensus 90 ~~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~p-li~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~-- 166 (523)
+|++++||||||| +||||+|||..+||||+|++|+| ||+|+|++|.++ |+++|+|++++..+.+.+|+.+.+..
T Consensus 12 ~~~~~~aVILAaG--~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~-Gi~~i~vv~~~~~~~i~~~~~~~~~~~~ 88 (425)
T PRK00725 12 LTRDTLALILAGG--RGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINS-GIRRIGVLTQYKAHSLIRHIQRGWSFFR 88 (425)
T ss_pred hhcceEEEEECCC--CCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHC-CCCeEEEEecCCHHHHHHHHHhhhcccc
Confidence 3456889999999 99999999999999999999996 999999999996 99999999999999999999762110
Q ss_pred --cCeeEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--cc--hHH--HHHHHHhcCC
Q psy17795 167 --YKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--IR--SDV--VILMHSLYSM 235 (523)
Q Consensus 167 --~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~ 235 (523)
.+..+.+..+.... ..++|..| ||+|++ ++++. ..+++ |||++ .+ .|+ ++++|++++
T Consensus 89 ~~~~~~i~i~~~~~~~--------~~e~~~lG--Ta~al~~a~~~l~~~~~d~-~lVl~gD~l~~~dl~~ll~~h~~~~- 156 (425)
T PRK00725 89 EELGEFVDLLPAQQRV--------DEENWYRG--TADAVYQNLDIIRRYDPKY-VVILAGDHIYKMDYSRMLADHVESG- 156 (425)
T ss_pred cCCCCeEEEeCCcccC--------CCCccccC--cHHHHHHHHHHHHhcCCCE-EEEecCCeEeccCHHHHHHHHHHcC-
Confidence 01122222211110 01234445 999999 77776 22467 99988 33 445 889998887
Q ss_pred cceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc-------ccceeeeeEEEeeHHHH-HHHHHhhccccccc
Q psy17795 236 AILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF-------VSTLVNCGVYLFSLDIF-QNIAAVFQSKQDEF 307 (523)
Q Consensus 236 ~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~-------~~~l~~~Giyif~~~il-~~l~~~~~~~~~e~ 307 (523)
+++|+++.+.+.+++..||++..|++ ++|.+|.|||..+ .+.++++|+|+|++++| +.|.+.....
T Consensus 157 -~~~tl~~~~~~~~~~~~yG~v~~d~~-~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~---- 230 (425)
T PRK00725 157 -ADCTVACLEVPREEASAFGVMAVDEN-DRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDP---- 230 (425)
T ss_pred -CCEEEEEEecchhhcccceEEEECCC-CCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCC----
Confidence 88899887765556789999999986 8999999998643 25799999999999976 4564422111
Q ss_pred ccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcc-----------hhHhhhccchhhhhccHHHHhhhccc----
Q psy17795 308 YNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTS-----------KWWSQLKSAGSAIYANRHYLQLYKTR---- 372 (523)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~-----------g~w~dIgt~~dyl~an~~~l~~~~~~---- 372 (523)
....+|.+|+++.+++++++++|.+. +||.|++++++|+++++.++......
T Consensus 231 -------------~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~ 297 (425)
T PRK00725 231 -------------NSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYD 297 (425)
T ss_pred -------------CccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccC
Confidence 01234568999999999999999885 69999999999999999998532110
Q ss_pred --CCcccc--cCCCc----------eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEE
Q psy17795 373 --HPERLQ--CSSQC----------KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV 438 (523)
Q Consensus 373 --~~~~~~--~~~~~----------~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I 438 (523)
.+.... ..+.+ .+..+++|+++|.| +++.|. +++|+++|.|+++|.|.+|+|+++|.||++|.|
T Consensus 298 ~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i 375 (425)
T PRK00725 298 RNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRL 375 (425)
T ss_pred CCCccccCCCCCCCCeEeccCCCCcceEEeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEE
Confidence 000000 00111 12346788888888 678884 799999999999999999999999999999999
Q ss_pred eceEECCCCEECCCcEEcCC
Q psy17795 439 LNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 439 ~~~iIg~~~~Ig~~~~i~~~ 458 (523)
.+|+|+++|.|+++++|++.
T Consensus 376 ~~~ii~~~~~i~~~~~i~~~ 395 (425)
T PRK00725 376 RRCVIDRGCVIPEGMVIGED 395 (425)
T ss_pred eeEEECCCCEECCCCEECCC
Confidence 99999999999999999754
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=366.41 Aligned_cols=339 Identities=15% Similarity=0.180 Sum_probs=250.6
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChH-HHHHHHHhhhhccCee
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSA-DLQKFVLDMVQEYKIN 170 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~-~i~~~l~~~~~~~~~~ 170 (523)
+|+|||||+| +|+||+|||..+||||+||+|| |||+|+|++|.+. |+++|+|+++|+.+ ++++||.+. ..|+++
T Consensus 2 ~~~avila~g--~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~-Gi~~I~iv~~~~~~~~I~~~l~~~-~~~~~~ 77 (369)
T TIGR02092 2 KMSAIINLTE--SSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNA-GIRNVFIFFKNKERQSLFDHLGSG-REWDLH 77 (369)
T ss_pred cEEEEEECCC--CCccccccccCCcccccccCCeeeEEEEEhhhhhcc-CCCEEEEEeCCCcHHHHHHHHhCC-CCCCcc
Confidence 5789999999 9999999999999999999999 9999999999996 99999999999776 999999863 456655
Q ss_pred E-------EEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--cc--hHH--HHHHHHhcC
Q psy17795 171 I-------RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--IR--SDV--VILMHSLYS 234 (523)
Q Consensus 171 i-------~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i~--~D~--l~~~h~~~~ 234 (523)
+ .+..+..++| .| ++++++ ++++. ..+++ |||++ ++ .|+ ++++|++.+
T Consensus 78 ~~~~~~~~~~~~e~~~l~-------------tg--~~~a~~~a~~~l~~~~~~~-~lvlnGD~l~~~dl~~ll~~h~~~~ 141 (369)
T TIGR02092 78 RKRDGLFVFPYNDRDDLS-------------EG--GKRYFSQNLEFLKRSTSEY-TVVLNSHMVCNIDLKAVLKYHEETG 141 (369)
T ss_pred cccCcEEEEeccCCCCcc-------------cC--hHHHHHHHHHHHHhCCCCE-EEEECCCEEEecCHHHHHHHHHHcC
Confidence 3 2223333333 22 666676 66774 22367 99998 44 455 888998888
Q ss_pred CcceEEEEEEeeCCCCCcceeE-EEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHH-HHHHHhhcccccccccccc
Q psy17795 235 MAILVTVMATEATRQQSVYYGC-IVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIF-QNIAAVFQSKQDEFYNGNY 312 (523)
Q Consensus 235 ~~~~~tv~~~~~~~~~~~~~g~-v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il-~~l~~~~~~~~~e~~~~~~ 312 (523)
+++|+++.+++..++..||. +..|++ ++|..+.+++.......+++|+|+|+++++ +.+.+.....
T Consensus 142 --a~~tl~~~~v~~~~~~~~g~vv~~~~~-g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~--------- 209 (369)
T TIGR02092 142 --KDITVVYKKVKPADASEYDTILRFDES-GKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRG--------- 209 (369)
T ss_pred --CCEEEEEEecCHHHccccCcEEEEcCC-CCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcC---------
Confidence 88999998875445677854 456665 788877544332234578999999999866 4444432111
Q ss_pred cccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCCceEecCcEEC
Q psy17795 313 MVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIH 392 (523)
Q Consensus 313 ~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~~~i~~~~~i~ 392 (523)
..++..++++.+++.+.++++..++||.|++++++|++++..+|+........... ...+.....+.
T Consensus 210 ----------~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~---~~~~~~~~~~~ 276 (369)
T TIGR02092 210 ----------KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSS---QGPIYTKVKDE 276 (369)
T ss_pred ----------ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCC---CCceeeccCCC
Confidence 11122588998887778999999999999999999999999998764311100000 11111112233
Q ss_pred CCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecC
Q psy17795 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMD 472 (523)
Q Consensus 393 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~ 472 (523)
+.+.|++++.| ++++||++|.|+ +.|.+|+||++|.|+++|.|.+|+|++++.|++++.+.+
T Consensus 277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~--------------- 338 (369)
T TIGR02092 277 PPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLEN--------------- 338 (369)
T ss_pred CCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEE---------------
Confidence 55666666666 678889999996 468899999999999999999999999999999999976
Q ss_pred CCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcC
Q psy17795 473 NPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLP 509 (523)
Q Consensus 473 ~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~ 509 (523)
++||++++|++++.+.+..+.|
T Consensus 339 ---------------~ii~~~~~v~~~~~~~~~~~~~ 360 (369)
T TIGR02092 339 ---------------VIIDKDVVIEPNVKIAGTSEQP 360 (369)
T ss_pred ---------------EEECCCCEECCCCEeCCCCCcc
Confidence 7888899999888886654443
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=360.00 Aligned_cols=337 Identities=19% Similarity=0.303 Sum_probs=256.8
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe-----
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI----- 169 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~----- 169 (523)
||||||| +|+||+|+|..+||||+|++|+ |||+|+|+.|.++ |+++|+|+++++.+++.+|+.+. |+.
T Consensus 1 aiILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~---~~~~~~~~ 74 (361)
T TIGR02091 1 AMVLAGG--RGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS-GIRRIGVLTQYKSHSLNRHIQRG---WDFDGFID 74 (361)
T ss_pred CEEeCCC--CCCccchhhhCCccccceecceeeEeeehhhhhhhc-CCceEEEEeccChHHHHHHHHhc---cCccCccC
Confidence 5999999 9999999999999999999999 8999999999996 99999999999888999999852 221
Q ss_pred -eEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--cch--HH--HHHHHHhcCCcceE
Q psy17795 170 -NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--IRS--DV--VILMHSLYSMAILV 239 (523)
Q Consensus 170 -~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i~~--D~--l~~~h~~~~~~~~~ 239 (523)
.+++....... ...+|..| |+++++ .+++. ..+++ |++++ .++ |+ +++.|+..+ +++
T Consensus 75 ~~~~~~~~~~~~--------~~~~~~~G--t~~al~~a~~~~~~~~~~~-~lv~~gD~l~~~~l~~~l~~~~~~~--~~~ 141 (361)
T TIGR02091 75 GFVTLLPAQQRE--------SGTDWYQG--TADAVYQNLDLIEDYDPEY-VLILSGDHIYKMDYEKMLDYHIESG--ADV 141 (361)
T ss_pred CCEEEeCCcccC--------CCCccccC--cHHHHHHHHHHHHhcCCCE-EEEecCCEEEcCCHHHHHHHHHHcC--CCE
Confidence 23333211110 11344556 999999 66665 22356 88887 433 44 788888776 778
Q ss_pred EEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccc-------eeeeeEEEeeHHHH-HHHHHhhccccccccccc
Q psy17795 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVST-------LVNCGVYLFSLDIF-QNIAAVFQSKQDEFYNGN 311 (523)
Q Consensus 240 tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~-------l~~~Giyif~~~il-~~l~~~~~~~~~e~~~~~ 311 (523)
++++.+.+.+++..||.+..|++ ++|.+|.|||..+... ++++|+|+|++++| +.+.+.....
T Consensus 142 ti~~~~~~~~~~~~~g~v~~d~~-~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~-------- 212 (361)
T TIGR02091 142 TIACIPVPRKEASRFGVMQVDED-GRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDP-------- 212 (361)
T ss_pred EEEEEecChHhcccccEEEECCC-CCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcC--------
Confidence 88887765556778999999876 8999999998655555 89999999999987 4444422111
Q ss_pred ccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCCceEecCcEE
Q psy17795 312 YMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYI 391 (523)
Q Consensus 312 ~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~~~i~~~~~i 391 (523)
....++.+++++.+++++++++|..+++|.|++++++|+.+++.++....... .... ..........+
T Consensus 213 ---------~~~~~~~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~--~~~~-~~~~~~~~~~~ 280 (361)
T TIGR02091 213 ---------ESSHDFGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFD--LYDR-KWPIYTYNEFL 280 (361)
T ss_pred ---------CcccccHHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhh--cccc-CCceecCCCCC
Confidence 01234557999999999999999999999999999999999999996532111 1000 01111122345
Q ss_pred CCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceec
Q psy17795 392 HSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKM 471 (523)
Q Consensus 392 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I 471 (523)
.+.++|++++.| ++++||++|+|+++ .|.+|+||++|.|+++|+|.+|+|++++.||+++.|.+
T Consensus 281 ~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~-------------- 344 (361)
T TIGR02091 281 PPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRN-------------- 344 (361)
T ss_pred CCceEecCCCEE-ECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEee--------------
Confidence 566666666655 67899999999976 88899999999999999999999999999999999975
Q ss_pred CCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 472 DNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 472 ~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
++||+++.|+++++|.|
T Consensus 345 ----------------~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 345 ----------------AIIDKNVRIGEGVVIGN 361 (361)
T ss_pred ----------------eEECCCCEECCCCEeCC
Confidence 77888888888887753
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=363.47 Aligned_cols=375 Identities=17% Similarity=0.209 Sum_probs=262.7
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
+.+|||||| +|+||++ .+||+|+|++|+|||+|+|++|.+. ++++++|++++..+.+.+++.+. ...+.+
T Consensus 5 ~~avILAaG--~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~----~~~~~~ 74 (482)
T PRK14352 5 TAVIVLAAG--AGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGL-APQHLVVVVGHDRERVAPAVAEL----APEVDI 74 (482)
T ss_pred ceEEEEcCC--CCCcCCC---CCCceeceeCCccHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHHhhcc----CCccEE
Confidence 459999999 9999998 7899999999999999999999986 99999999999888888888752 123455
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc----cc--hHH--HHHHHHhcCCcceEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE----IR--SDV--VILMHSLYSMAILVTVM 242 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~----i~--~D~--l~~~h~~~~~~~~~tv~ 242 (523)
+.++++.| |+++++ ++++. ..+++ ||+++ ++ .++ +++.|++.+ +.++++
T Consensus 75 ~~~~~~~G-----------------t~~si~~al~~l~~~~~~~-vlV~~gD~P~~~~~~l~~li~~~~~~~--~~~~v~ 134 (482)
T PRK14352 75 AVQDEQPG-----------------TGHAVQCALEALPADFDGT-VVVTAGDVPLLDGETLADLVATHTAEG--NAVTVL 134 (482)
T ss_pred EeCCCCCC-----------------cHHHHHHHHHHhccCCCCe-EEEEeCCeeccCHHHHHHHHHHHHhcC--CeEEEE
Confidence 66666677 999998 66765 22356 78877 22 233 777787766 777777
Q ss_pred EEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHHHH-HHHhhccc-ccccccccccccC
Q psy17795 243 ATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIFQN-IAAVFQSK-QDEFYNGNYMVNG 316 (523)
Q Consensus 243 ~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il~~-l~~~~~~~-~~e~~~~~~~~~~ 316 (523)
..+.. ++..||.+..|++ ++|.+|.|||... ...++++|+|+|++++|.. +.+..... ++||++
T Consensus 135 ~~~~~--~p~~yg~~~~~~~-g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l------- 204 (482)
T PRK14352 135 TTTLD--DPTGYGRILRDQD-GEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYL------- 204 (482)
T ss_pred EeecC--CCCCCCEEEECCC-CCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeH-------
Confidence 76653 5678999888876 8999999998743 2457999999999998854 44433222 244443
Q ss_pred CCCCcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhh------hhccHHHHhhhcccCCcccccCCCceEecCc
Q psy17795 317 KDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSA------IYANRHYLQLYKTRHPERLQCSSQCKTIGDV 389 (523)
Q Consensus 317 ~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dy------l~an~~~l~~~~~~~~~~~~~~~~~~i~~~~ 389 (523)
+|+++.+++.| ++++|..++||.++++++.+ ..++..++..+....+..+. ...+.|.+++
T Consensus 205 -----------~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~-~~~~~i~~~v 272 (482)
T PRK14352 205 -----------TDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVD-PATTWIDVDV 272 (482)
T ss_pred -----------HHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC-CCeEEEeCCE
Confidence 79999999988 59999999999999988776 44454445433222221111 1246788888
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEc-------------
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE------------- 456 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~------------- 456 (523)
+|++++.|++++.|+++++||++|.|+++|.|.+++||++|.|+. +.+.+++|++++.||+++.+.
T Consensus 273 ~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~ 351 (482)
T PRK14352 273 TIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGA 351 (482)
T ss_pred EECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECC
Confidence 888888888888888888888888888888887777766666542 344444444444444433332
Q ss_pred -----CCCCCCCC------CCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCCcE
Q psy17795 457 -----GTPCDPNP------NKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPYKE 512 (523)
Q Consensus 457 -----~~~~~~~~------~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~ 512 (523)
++.++.+. .-+.+.||++|.||.++.+.. +.++||++|.||.+++| .+++|++++.
T Consensus 352 ~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~ 431 (482)
T PRK14352 352 FVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTV 431 (482)
T ss_pred cEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCE
Confidence 11111111 112346777888887766543 22677888777777765 4567777777
Q ss_pred eCCCCCCcc
Q psy17795 513 LTRSFKNEI 521 (523)
Q Consensus 513 i~~~~~~~~ 521 (523)
|.+++|+..
T Consensus 432 v~~~v~~~~ 440 (482)
T PRK14352 432 IREDVPPGA 440 (482)
T ss_pred EcCCCCCCc
Confidence 777777543
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=350.20 Aligned_cols=378 Identities=17% Similarity=0.182 Sum_probs=265.0
Q ss_pred cccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe
Q psy17795 90 VSCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 90 ~~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~ 169 (523)
.|+.+.||||||| .|+||++ ..||+|+|++|+|||+|++++|.+. ++++++|++++..+.+.+++.+ ++.
T Consensus 2 ~~~~~~aiILAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~----~~~ 71 (446)
T PRK14353 2 TDRTCLAIILAAG--EGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASL-GPSRVAVVVGPGAEAVAAAAAK----IAP 71 (446)
T ss_pred ccccceEEEEcCC--CCCccCC---CCCcccCEECCchHHHHHHHHHHhC-CCCcEEEEECCCHHHHHHHhhc----cCC
Confidence 3567889999999 9999986 7899999999999999999999986 9999999999988889888865 222
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c-c--hHH---HHHHHHhcCCcceE
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I-R--SDV---VILMHSLYSMAILV 239 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i-~--~D~---l~~~h~~~~~~~~~ 239 (523)
++.+..+.++.| ++++++ ++++....++ |++++ . + .+. +++.+ +.+ +++
T Consensus 72 ~~~~~~~~~~~G-----------------~~~sl~~a~~~l~~~~~~-~lv~~~D~P~i~~~~l~~l~~~~-~~~--~~~ 130 (446)
T PRK14353 72 DAEIFVQKERLG-----------------TAHAVLAAREALAGGYGD-VLVLYGDTPLITAETLARLRERL-ADG--ADV 130 (446)
T ss_pred CceEEEcCCCCC-----------------cHHHHHHHHHHHhccCCC-EEEEeCCcccCCHHHHHHHHHhH-hcC--CcE
Confidence 344455555666 899998 6666422466 78877 2 2 122 44432 344 677
Q ss_pred EEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHH-HHHHHhhccc-cccccccccc
Q psy17795 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIF-QNIAAVFQSK-QDEFYNGNYM 313 (523)
Q Consensus 240 tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il-~~l~~~~~~~-~~e~~~~~~~ 313 (523)
++++.+.. ++..||.+..+ + ++|.++.|||... ...++++|+|+|+++.| +.+++..... .++|++
T Consensus 131 ~i~~~~~~--~~~~~g~~~~~-~-g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~---- 202 (446)
T PRK14353 131 VVLGFRAA--DPTGYGRLIVK-G-GRLVAIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYL---- 202 (446)
T ss_pred EEEEEEeC--CCCcceEEEEC-C-CeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeH----
Confidence 77777653 45789987774 4 8999999997532 23688999999998755 5555432211 233332
Q ss_pred ccCCCCCcccccchhhhhhhhhcCCc-EEEEEcc-hhHhhhccchhhhhccHHHHhhhc--ccCC-cccccCCCceEecC
Q psy17795 314 VNGKDTDFNHIQLEKEIIMPLAGSGK-AYVYQTS-KWWSQLKSAGSAIYANRHYLQLYK--TRHP-ERLQCSSQCKTIGD 388 (523)
Q Consensus 314 ~~~~~~~~~~~~~~~dil~~li~~g~-v~~~~~~-g~w~dIgt~~dyl~an~~~l~~~~--~~~~-~~~~~~~~~~i~~~ 388 (523)
+++++.+++.|. ++++..+ ++|.++++++||..++..+..... .... ..+..+....+++.
T Consensus 203 --------------~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (446)
T PRK14353 203 --------------TDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYD 268 (446)
T ss_pred --------------HHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCc
Confidence 688999988875 8898886 579999999999999876654321 0000 00010012356677
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCC---
Q psy17795 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNP--- 464 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~--- 464 (523)
+.|++++.|++++.|++++.||++|.|++++.|.+++||++|.||+++.|. +++||++|.||+++.+.+..++.+.
T Consensus 269 ~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~ 348 (446)
T PRK14353 269 TVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVN 348 (446)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEEC
Confidence 788888888888888888888888888888888778888888888888887 7888888888888877554333221
Q ss_pred ---CCCceecCCCCeecCCCee-------cCCcEEeCCCCEECCCcEE-------eCeEEcCCcEeCCCCCCcc
Q psy17795 465 ---NKAFAKMDNPPLFNSNGKL-------NPSITILGDGVTVPGELIV-------LNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 465 ---~~~~v~I~~~~~ig~~~~i-------~~g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~~~~~~~~ 521 (523)
....+.|++++.||+++++ ..+ ++||++|+||++++| .+++|++++.|.+++|...
T Consensus 349 ~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~-~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~ 421 (446)
T PRK14353 349 HLTYIGDATIGAGANIGAGTITCNYDGFNKHR-TEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDA 421 (446)
T ss_pred CeeEEcCcEEcCCcEECCceeeeccccccCCC-cEECCCcEECCCCEEeCCCEECCCCEECCCCEECccCCCCC
Confidence 1123567777777776544 223 566777777777665 3556667777777776443
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=349.06 Aligned_cols=373 Identities=20% Similarity=0.278 Sum_probs=260.9
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|++|||||| +|+||++ .+||||+|++|+|||+|+++++.+. +++++++++++..+.+.+++.+ ++ +.+
T Consensus 1 m~aiIlAaG--~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iiiv~~~~~~~i~~~~~~----~~--i~~ 68 (451)
T TIGR01173 1 LSVVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARAL-GPQKIHVVYGHGAEQVRKALAN----RD--VNW 68 (451)
T ss_pred CeEEEEcCC--CCcccCC---CCchhhceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhcC----CC--cEE
Confidence 689999999 9999998 8999999999999999999999986 9999999999988889888875 33 445
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c--ch--HH--HHHHHHhcCCcceEEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I--RS--DV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i--~~--D~--l~~~h~~~~~~~~~tv~~ 243 (523)
+.+.+++| ++++++ .+++.. .++ |++++ . +. ++ ++++|.+. .+++++
T Consensus 69 ~~~~~~~G-----------------~~~ai~~a~~~l~~-~~~-~lv~~~D~p~i~~~~~~~l~~~~~~~----~~~~~~ 125 (451)
T TIGR01173 69 VLQAEQLG-----------------TGHAVLQALPFLPD-DGD-VLVLYGDVPLISAETLERLLEAHRQN----GITLLT 125 (451)
T ss_pred EEcCCCCc-----------------hHHHHHHHHHhcCC-CCc-EEEEECCcCCcCHHHHHHHHHHHhhC----CEEEEE
Confidence 55655667 999999 677752 256 78876 2 22 23 56666542 356666
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHH-HHHHHhhccc-ccccccccccccCC
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIF-QNIAAVFQSK-QDEFYNGNYMVNGK 317 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il-~~l~~~~~~~-~~e~~~~~~~~~~~ 317 (523)
.+.+ ++..||.+..|++ ++|.++.|||... ..+++++|+|+|++++| +.+.+..... ++|+++
T Consensus 126 ~~~~--~~~~~g~v~~d~~-g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~-------- 194 (451)
T TIGR01173 126 AKLP--DPTGYGRIIREND-GKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYL-------- 194 (451)
T ss_pred EecC--CCCCCCEEEEcCC-CCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeH--------
Confidence 6653 4567999888876 8999999987532 23578999999999975 5454432211 233332
Q ss_pred CCCcccccchhhhhhhhhcCCc-EEEEEcchh--HhhhccchhhhhccHHHHhhhccc--CC-cccccCCCceEecCcEE
Q psy17795 318 DTDFNHIQLEKEIIMPLAGSGK-AYVYQTSKW--WSQLKSAGSAIYANRHYLQLYKTR--HP-ERLQCSSQCKTIGDVYI 391 (523)
Q Consensus 318 ~~~~~~~~~~~dil~~li~~g~-v~~~~~~g~--w~dIgt~~dyl~an~~~l~~~~~~--~~-~~~~~~~~~~i~~~~~i 391 (523)
+++++.+++++. +++|..+++ |.++++++++..++..+..+.... .+ ......+...+.+++.|
T Consensus 195 ----------~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~i 264 (451)
T TIGR01173 195 ----------TDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEI 264 (451)
T ss_pred ----------HHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEE
Confidence 689999998874 999999888 789999999888766554321110 01 11111124467788888
Q ss_pred CCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC-CCCCC------CC
Q psy17795 392 HSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG-TPCDP------NP 464 (523)
Q Consensus 392 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~-~~~~~------~~ 464 (523)
++++.|++++.|+++++||++|.|+++|.|.+++||++|.|+++|.|.+++||++|.||+++.|.+ ..++. ..
T Consensus 265 g~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~ 344 (451)
T TIGR01173 265 GRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFV 344 (451)
T ss_pred CCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccce
Confidence 888888888888888888888888888888888888888888777777777776666666666542 11111 00
Q ss_pred C-----------------CCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCCcEeC
Q psy17795 465 N-----------------KAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPYKELT 514 (523)
Q Consensus 465 ~-----------------~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~ 514 (523)
. -+.+.||+++.||.++.+.. ..++||++|.||.+++| .+++|++++.|+
T Consensus 345 ~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~ 424 (451)
T TIGR01173 345 ETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVT 424 (451)
T ss_pred eecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEEC
Confidence 0 01245556666665544321 12556777777776644 567888888888
Q ss_pred CCCCCccc
Q psy17795 515 RSFKNEIL 522 (523)
Q Consensus 515 ~~~~~~~i 522 (523)
.++|+..+
T Consensus 425 ~~v~~~~~ 432 (451)
T TIGR01173 425 KDVPEGAL 432 (451)
T ss_pred ccCCCCcE
Confidence 88886554
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=344.99 Aligned_cols=369 Identities=17% Similarity=0.182 Sum_probs=244.2
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|.++||||||| +|+||++ .+||||+|++|+|||+|+++.+.+. +++++|++++..+.+.+++.+. + ..+
T Consensus 1 m~~~aiIlAaG--~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~~~i~~~~~~~---~-~~v 69 (430)
T PRK14359 1 MKLSIIILAAG--KGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQKERIKEAVLEY---F-PGV 69 (430)
T ss_pred CCccEEEEcCC--CCccCCC---CCCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhc---C-Cce
Confidence 55789999999 9999998 8999999999999999999999974 6889999999999999998762 1 135
Q ss_pred EEEecc--cccchhhhhcccccccccCCCchhHHHHhhcccCCcceEEEEc--c-c-hHHHHHHHHhcCCcceEEEEEEe
Q psy17795 172 RYLQEF--WDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLE--I-R-SDVVILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 172 ~~~~~~--~~~g~~~~~~~~~~~~~~g~~ta~al~~~~i~~~~d~~~Lvl~--i-~-~D~l~~~h~~~~~~~~~tv~~~~ 245 (523)
.++.++ ..+| |+++++. .....++ ||+++ . + .+-.++.+.+.+ +++++.+.+
T Consensus 70 ~~~~~~~~~~~g-----------------t~~al~~--~~~~~d~-vlv~~gD~p~~~~~~l~~l~~~~--~~~~v~~~~ 127 (430)
T PRK14359 70 IFHTQDLENYPG-----------------TGGALMG--IEPKHER-VLILNGDMPLVEKDELEKLLEND--ADIVMSVFH 127 (430)
T ss_pred EEEEecCccCCC-----------------cHHHHhh--cccCCCe-EEEEECCccCCCHHHHHHHHhCC--CCEEEEEEE
Confidence 555443 2355 8999982 1112356 88887 2 2 222455555555 677777777
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHHHHHHHhhccc--ccccccccccccCCCC
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIFQNIAAVFQSK--QDEFYNGNYMVNGKDT 319 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il~~l~~~~~~~--~~e~~~~~~~~~~~~~ 319 (523)
++ ++..||.+..| + ++|..+.|+|... ..++.++|+|+|++++|..+....... ++||++
T Consensus 128 ~~--~~~~~g~v~~d-~-g~v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l---------- 193 (430)
T PRK14359 128 LA--DPKGYGRVVIE-N-GQVKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYL---------- 193 (430)
T ss_pred cC--CCccCcEEEEc-C-CeEEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceeh----------
Confidence 64 45679987765 4 8999999987532 246889999999999988664322211 234443
Q ss_pred CcccccchhhhhhhhhcCCc-EEEEEcc-hhHhhhccchhhhhccHHHHhhhcc---------cCCcccccCCCceEecC
Q psy17795 320 DFNHIQLEKEIIMPLAGSGK-AYVYQTS-KWWSQLKSAGSAIYANRHYLQLYKT---------RHPERLQCSSQCKTIGD 388 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g~-v~~~~~~-g~w~dIgt~~dyl~an~~~l~~~~~---------~~~~~~~~~~~~~i~~~ 388 (523)
+|+++.+++.|. +.++..+ ++|.|+++++||+.++..++.+... ..+......+++.|.++
T Consensus 194 --------~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~ 265 (430)
T PRK14359 194 --------TDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGE 265 (430)
T ss_pred --------hhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCc
Confidence 688998888764 8888886 6899999999999998766544221 11212222256777788
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCc
Q psy17795 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAF 468 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~ 468 (523)
+.|++++.|++++.|+ +++||++|.|++ +.|.+++||++|.|+++|+|.+|+||++|.|++.+ +.++.++....-..
T Consensus 266 ~~ig~~~~I~~~~~i~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~-~~~~~i~~~~~i~d 342 (430)
T PRK14359 266 CELEEGVRILGKSKIE-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAK-LNGVKAGHLSYLGD 342 (430)
T ss_pred eEECCCCEECCCeEEE-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccE-eccccccccccccC
Confidence 8888888888887775 777777777765 55566777777777777777666666666555532 23333333333334
Q ss_pred eecCCCCeecCCCeecCC------cEEeCCCCEECCCcEE-------eCeEEcCCcEeCCCCC
Q psy17795 469 AKMDNPPLFNSNGKLNPS------ITILGDGVTVPGELIV-------LNSIVLPYKELTRSFK 518 (523)
Q Consensus 469 v~I~~~~~ig~~~~i~~g------~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~~~~~ 518 (523)
+.||++|.||.++.+... .++||++|.||+++.| .+++|++++.|.+++|
T Consensus 343 ~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~ 405 (430)
T PRK14359 343 CEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVP 405 (430)
T ss_pred CEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccC
Confidence 455555555554433211 1344444444444433 2344445555555554
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=347.58 Aligned_cols=373 Identities=17% Similarity=0.204 Sum_probs=242.8
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCee
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~ 170 (523)
||.|++|||||| +|+||++ ..||||+|++|+|||+|+++.|.+. +++++++++++..+.+++++... +
T Consensus 3 ~~~~~aiIlAaG--~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~------~ 70 (456)
T PRK09451 3 NSAMSVVILAAG--KGTRMYS---DLPKVLHTLAGKPMVQHVIDAANEL-GAQHVHLVYGHGGDLLKQTLADE------P 70 (456)
T ss_pred CCCceEEEEcCC--CCCcCCC---CCChhcceeCChhHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhhccC------C
Confidence 567899999999 9999995 7999999999999999999999986 99999999999888888888641 3
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c--ch--HH--HHHHHHhcCCcceEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I--RS--DV--VILMHSLYSMAILVT 240 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i--~~--D~--l~~~h~~~~~~~~~t 240 (523)
+.++.+++++| |+++++ ++++.. .++ ||+++ . +. ++ +++.|++. .++
T Consensus 71 ~~~i~~~~~~G-----------------t~~al~~a~~~l~~-~~~-vlV~~gD~P~i~~~~i~~l~~~~~~~----~~~ 127 (456)
T PRK09451 71 LNWVLQAEQLG-----------------TGHAMQQAAPFFAD-DED-ILMLYGDVPLISVETLQRLRDAKPQG----GIG 127 (456)
T ss_pred cEEEECCCCCC-----------------cHHHHHHHHHhhcc-CCc-EEEEeCCcccCCHHHHHHHHHHhhcC----CEE
Confidence 55666666777 999999 666642 356 88877 2 32 33 55555433 345
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHHH-HHHHhhccc-ccccccccccc
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIFQ-NIAAVFQSK-QDEFYNGNYMV 314 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il~-~l~~~~~~~-~~e~~~~~~~~ 314 (523)
+++.+++ ++..||.+.. ++ ++|.+|.|||... .++++++|+|+|++++|. .+.+..... .+||++
T Consensus 128 i~~~~~~--~~~~yG~v~~-~~-g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l----- 198 (456)
T PRK09451 128 LLTVKLD--NPTGYGRITR-EN-GKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYI----- 198 (456)
T ss_pred EEEEEcC--CCCCceEEEe-cC-CeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeH-----
Confidence 5665553 5678998754 45 8999999998532 246899999999998775 454433221 244433
Q ss_pred cCCCCCcccccchhhhhhhhhcCC-cEEEEE------cchh--HhhhccchhhhhccHH--HHh-hhcccCCcccc----
Q psy17795 315 NGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQ------TSKW--WSQLKSAGSAIYANRH--YLQ-LYKTRHPERLQ---- 378 (523)
Q Consensus 315 ~~~~~~~~~~~~~~dil~~li~~g-~v~~~~------~~g~--w~dIgt~~dyl~an~~--~l~-~~~~~~~~~~~---- 378 (523)
+|+++.++++| ++.+|. ..|| |.+++++++|++++.. ++. ......|....
T Consensus 199 -------------~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~ 265 (456)
T PRK09451 199 -------------TDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGT 265 (456)
T ss_pred -------------HHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCc
Confidence 79999999987 488885 3555 7889999999998742 322 11111121110
Q ss_pred --------cCCCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEE
Q psy17795 379 --------CSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449 (523)
Q Consensus 379 --------~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~I 449 (523)
..+++.|.+++.|++++.|++++.| .+++||++|.|++++.|.+++||++|.|++++.|. ++.|++++.|
T Consensus 266 ~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i-~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~i 344 (456)
T PRK09451 266 LTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVL-KNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHV 344 (456)
T ss_pred EEECCCCEEcCCeEEecCcEECCCCEECCCceE-ecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCcee
Confidence 0033444444455555555555555 34555556666666666556666666666666665 5556666555
Q ss_pred CCCcEEcCCCCCCC------CCCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCC
Q psy17795 450 GNWSRVEGTPCDPN------PNKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPY 510 (523)
Q Consensus 450 g~~~~i~~~~~~~~------~~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~ 510 (523)
|+++.|.++.++.+ ...+.+.||++|.||+++.+.. ..++||++|.||.+++| .+++|+++
T Consensus 345 g~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g 424 (456)
T PRK09451 345 GNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAG 424 (456)
T ss_pred ccceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCC
Confidence 55555433322221 1123456777777776654321 12456666666666654 45677777
Q ss_pred cEeCCCCCCcc
Q psy17795 511 KELTRSFKNEI 521 (523)
Q Consensus 511 ~~i~~~~~~~~ 521 (523)
+.|++++|+..
T Consensus 425 s~v~~~v~~~~ 435 (456)
T PRK09451 425 TTVTRDVAENE 435 (456)
T ss_pred CEEccccCCCC
Confidence 78888887543
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=346.19 Aligned_cols=373 Identities=15% Similarity=0.184 Sum_probs=254.9
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
++||||||| +|+||+. ..||+|+|++|+|||+|++++|.+. ++++++|++++..+.+++++.+ . .+++
T Consensus 6 ~~aiILAaG--~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~----~--~~~~ 73 (456)
T PRK14356 6 TGALILAAG--KGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPL-FGDNVWTVVGHRADMVRAAFPD----E--DARF 73 (456)
T ss_pred eeEEEEcCC--CCccCCC---CCCceecccCCCcHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhccc----c--CceE
Confidence 679999999 9999985 8999999999999999999999986 8999999999988888887754 1 3456
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--c--ch--HH--HHHHHHhcCCcceEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--I--RS--DV--VILMHSLYSMAILVTVM 242 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i--~~--D~--l~~~h~~~~~~~~~tv~ 242 (523)
+.++.+.| |+++++ .+++. ...++ +++++ . +. ++ +++.|+ + ++.+++
T Consensus 74 v~~~~~~G-----------------t~~al~~a~~~l~~~~~d~-vlv~~gD~P~i~~~~i~~li~~~~--~--~~~~l~ 131 (456)
T PRK14356 74 VLQEQQLG-----------------TGHALQCAWPSLTAAGLDR-VLVVNGDTPLVTTDTIDDFLKEAA--G--ADLAFM 131 (456)
T ss_pred EEcCCCCC-----------------cHHHHHHHHHHHhhcCCCc-EEEEeCCcccCCHHHHHHHHHHHh--c--CCEEEE
Confidence 66666677 999998 67775 22466 88877 2 21 22 555554 3 667777
Q ss_pred EEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC------cccceeeeeEEEeeHHHHHHHHHhhcc-c-ccccccccccc
Q psy17795 243 ATEATRQQSVYYGCIVRKQQTSEISHYVEKPST------FVSTLVNCGVYLFSLDIFQNIAAVFQS-K-QDEFYNGNYMV 314 (523)
Q Consensus 243 ~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~------~~~~l~~~Giyif~~~il~~l~~~~~~-~-~~e~~~~~~~~ 314 (523)
+.+++ ++..||.+..+ + |+|.+|.|||.. +.++++++|+|+|++++++.+.+.+.. . .+||++
T Consensus 132 ~~~~~--~~~~~g~v~~~-~-g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~l----- 202 (456)
T PRK14356 132 TLTLP--DPGAYGRVVRR-N-GHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYI----- 202 (456)
T ss_pred EEEcC--CCCCceEEEEc-C-CeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEH-----
Confidence 77764 56789988764 4 899999998752 346788999999999988655332221 1 234443
Q ss_pred cCCCCCcccccchhhhhhhhhcCCc-EEEEEcch--hHhhhccchhhhhccHHHHhhhccc--CC-cccccCCCceEecC
Q psy17795 315 NGKDTDFNHIQLEKEIIMPLAGSGK-AYVYQTSK--WWSQLKSAGSAIYANRHYLQLYKTR--HP-ERLQCSSQCKTIGD 388 (523)
Q Consensus 315 ~~~~~~~~~~~~~~dil~~li~~g~-v~~~~~~g--~w~dIgt~~dyl~an~~~l~~~~~~--~~-~~~~~~~~~~i~~~ 388 (523)
+++++.+++.+. +.++...+ +|.+++++++|..++..+..+.... .+ ..+...+++.++++
T Consensus 203 -------------td~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~ 269 (456)
T PRK14356 203 -------------TDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPR 269 (456)
T ss_pred -------------HHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCC
Confidence 789999887774 88888765 5699999999999887666442210 11 11111134566666
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC-CCCC------
Q psy17795 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG-TPCD------ 461 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~-~~~~------ 461 (523)
+.|++++.|.+++.|+++++||++|.|+++|.|.+++||++|.|+++|+|.+++||++|.||+++.|.+ +.++
T Consensus 270 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig 349 (456)
T PRK14356 270 ATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVG 349 (456)
T ss_pred cEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEec
Confidence 777777777777777777777777777777777777777777777777777777776666666666542 1111
Q ss_pred -----------CC------CCCCceecCCCCeecCCCeec------CCcEEeCCCCEECCCcEE-------eCeEEcCCc
Q psy17795 462 -----------PN------PNKAFAKMDNPPLFNSNGKLN------PSITILGDGVTVPGELIV-------LNSIVLPYK 511 (523)
Q Consensus 462 -----------~~------~~~~~v~I~~~~~ig~~~~i~------~g~~iIG~~~~Ig~~~~i-------~~~~v~~~~ 511 (523)
.+ ..-+.+.|++++.||+++... ...++||+++.+|.++.+ .+++|++++
T Consensus 350 ~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~ 429 (456)
T PRK14356 350 NFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGS 429 (456)
T ss_pred CCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCC
Confidence 10 001123455555555553211 012556666666666654 466777888
Q ss_pred EeCCCCCCccc
Q psy17795 512 ELTRSFKNEIL 522 (523)
Q Consensus 512 ~i~~~~~~~~i 522 (523)
+|.+++|+..+
T Consensus 430 ~v~~~~~~~~~ 440 (456)
T PRK14356 430 VITKDVPDGSL 440 (456)
T ss_pred EEeccCCCCcE
Confidence 88888875543
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=336.57 Aligned_cols=377 Identities=20% Similarity=0.296 Sum_probs=252.5
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|.++||||||| .|+||++ .+||||+|++|+|||+|+|++|.+. +++++++++++..+++++++.+ .+
T Consensus 1 m~~~avIlAaG--~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~-gi~~iivvv~~~~~~i~~~~~~-------~~ 67 (458)
T PRK14354 1 MNRYAIILAAG--KGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKA-GIDKIVTVVGHGAEEVKEVLGD-------RS 67 (458)
T ss_pred CCceEEEEeCC--CCcccCC---CCChhhCEeCCccHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhcC-------Cc
Confidence 56789999999 9999986 7999999999999999999999986 9999999999988888888764 13
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cc--hHH--HHHHHHhcCCcceEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IR--SDV--VILMHSLYSMAILVTV 241 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~--~D~--l~~~h~~~~~~~~~tv 241 (523)
.++.+.+++| ++++++ ++++...++. |++++ ++ .++ +++.|++.+ ++.++
T Consensus 68 ~~~~~~~~~g-----------------~~~al~~a~~~l~~~~d~-vlv~~~D~p~i~~~~l~~li~~~~~~~--~~~t~ 127 (458)
T PRK14354 68 EFALQEEQLG-----------------TGHAVMQAEEFLADKEGT-TLVICGDTPLITAETLKNLIDFHEEHK--AAATI 127 (458)
T ss_pred EEEEcCCCCC-----------------HHHHHHHHHHHhcccCCe-EEEEECCccccCHHHHHHHHHHHHhcC--CceEE
Confidence 3455555667 899999 6777532356 77776 22 233 777887666 77787
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC----cccceeeeeEEEeeHH-HHHHHHHhhccc-cccccccccccc
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKPST----FVSTLVNCGVYLFSLD-IFQNIAAVFQSK-QDEFYNGNYMVN 315 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~----~~~~l~~~Giyif~~~-il~~l~~~~~~~-~~e~~~~~~~~~ 315 (523)
++.+.. ++..||.+..|++ ++|.++.|||.. ....++++|+|+|+++ +++.+.+..... .++++
T Consensus 128 ~~~~~~--~~~~~g~v~~d~~-~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~------- 197 (458)
T PRK14354 128 LTAIAE--NPTGYGRIIRNEN-GEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYY------- 197 (458)
T ss_pred EEEEcC--CCCCceEEEEcCC-CCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEe-------
Confidence 777653 4567998888876 899999998742 2356899999999987 556665533221 22332
Q ss_pred CCCCCcccccchhhhhhhhhcCC-cEEEEEcchhHh--hhccchhhhhccHHHHhhhccc--CCc-ccccCCCceEecCc
Q psy17795 316 GKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWS--QLKSAGSAIYANRHYLQLYKTR--HPE-RLQCSSQCKTIGDV 389 (523)
Q Consensus 316 ~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~--dIgt~~dyl~an~~~l~~~~~~--~~~-~~~~~~~~~i~~~~ 389 (523)
+ +|+++.+++.+ +++++..+++|. ++++++|+..++..+..+.... .+. .+.....+.|++++
T Consensus 198 ----------~-~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~ 266 (458)
T PRK14354 198 ----------L-TDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADV 266 (458)
T ss_pred ----------H-HHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCc
Confidence 2 68889888776 499999987765 6668888888876554332210 010 11111235677778
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEE----------------CCCCEEe-ceEECCCCEECCC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASI----------------GNHSLVL-NSIVGRNSKVGNW 452 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~I----------------g~~~~I~-~~iIg~~~~Ig~~ 452 (523)
.|++++.|++++.|++++.||++|.|++++.|.+++||++|.| |++|.|. +++||++|.|+++
T Consensus 267 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~ 346 (458)
T PRK14354 267 EIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNF 346 (458)
T ss_pred EECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCc
Confidence 8888888888887777778888888777777766655555544 4444444 4444455544444
Q ss_pred cEEcCCCCCCCC------CCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCCcEe
Q psy17795 453 SRVEGTPCDPNP------NKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPYKEL 513 (523)
Q Consensus 453 ~~i~~~~~~~~~------~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i 513 (523)
+.|.+..++.+. ..+.+.|++++.||.++.+.. ..++||+++.||.+++| .+++|++++.|
T Consensus 347 ~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v 426 (458)
T PRK14354 347 VEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTI 426 (458)
T ss_pred eEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEE
Confidence 444322211111 112345566666665544322 12556676666666655 45677788888
Q ss_pred CCCCCCccc
Q psy17795 514 TRSFKNEIL 522 (523)
Q Consensus 514 ~~~~~~~~i 522 (523)
.+++|+..+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK14354 427 TKDVPEDAL 435 (458)
T ss_pred CCCCCCCCE
Confidence 888886543
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=307.76 Aligned_cols=228 Identities=20% Similarity=0.269 Sum_probs=201.4
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCeeEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~ 172 (523)
||+|||||| .||||+|+|...||+|+|+.+||||+|.|+.|..+ ||++|.||+++ ....+++++++ +++|+++++
T Consensus 1 mKgiILAgG--~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~a-GI~dI~II~~~~~~~~~~~llGd-gs~~gv~it 76 (286)
T COG1209 1 MKGVILAGG--SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLA-GIRDILIVVGPEDKPTFKELLGD-GSDFGVDIT 76 (286)
T ss_pred CCcEEecCc--CccccccccccCCcccceecCcchhHhHHHHHHHc-CCceEEEEecCCchhhhhhhhcC-ccccCcceE
Confidence 789999999 99999999999999999999999999999999986 99999999887 77889999988 478999999
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc-hHH--HHHHHHhcCCcceEEEEEEe
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR-SDV--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~-~D~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
|..|+++.| .|+|+. ++|+.+ ++.+|++. ++ .++ +++.+.+.. ...++++.+
T Consensus 77 Y~~Q~~p~G-----------------lA~Av~~a~~fv~~--~~f~l~LGDNi~~~~l~~~~~~~~~~~--~ga~i~~~~ 135 (286)
T COG1209 77 YAVQPEPDG-----------------LAHAVLIAEDFVGD--DDFVLYLGDNIFQDGLSELLEHFAEEG--SGATILLYE 135 (286)
T ss_pred EEecCCCCc-----------------HHHHHHHHHhhcCC--CceEEEecCceeccChHHHHHHHhccC--CCcEEEEEE
Confidence 999999999 999999 889873 44144444 32 345 555445555 678999999
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccccc
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQ 325 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 325 (523)
++ +|++||++++|++ ++++.+.|||+.+.|+++-+|+|.|++++|+.++...++.++|+++
T Consensus 136 V~--dP~rfGV~e~d~~-~~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEI---------------- 196 (286)
T COG1209 136 VD--DPSRYGVVEFDED-GKVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEI---------------- 196 (286)
T ss_pred cC--CcccceEEEEcCC-CcEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEe----------------
Confidence 95 7899999999987 8999999999999999999999999999999999988888999988
Q ss_pred chhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 326 LEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 326 ~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
+|+++.++++|. +......|+|.|.||++++++|++..+.
T Consensus 197 --Td~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 197 --TDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred --hHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 799999999998 6666778899999999999999998886
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=329.07 Aligned_cols=368 Identities=17% Similarity=0.222 Sum_probs=246.5
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|+||||||| .|+||++ .+||||+|++|+|||+|+|+++.+. + ++|+|++++..+.+.+++.+ + +.+
T Consensus 1 m~avIlA~G--~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~-~-~~i~vv~~~~~~~i~~~~~~-----~--~~~ 66 (448)
T PRK14357 1 MRALVLAAG--KGTRMKS---KIPKVLHKISGKPMINWVIDTAKKV-A-QKVGVVLGHEAELVKKLLPE-----W--VKI 66 (448)
T ss_pred CeEEEECCC--CCccCCC---CCCceeeEECCeeHHHHHHHHHHhc-C-CcEEEEeCCCHHHHHHhccc-----c--cEE
Confidence 689999999 9999986 8999999999999999999999985 4 89999999988888888764 1 345
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cch--HH--HHHHHHhcCCcceEEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IRS--DV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~~--D~--l~~~h~~~~~~~~~tv~~ 243 (523)
+.+++++| ++++++ ++++.. .+. |++++ ++. |+ +++.|++.+ +++++++
T Consensus 67 ~~~~~~~g-----------------~~~ai~~a~~~l~~-~~~-vlv~~gD~p~i~~~~i~~l~~~~~~~~--~d~ti~~ 125 (448)
T PRK14357 67 FLQEEQLG-----------------TAHAVMCARDFIEP-GDD-LLILYGDVPLISENTLKRLIEEHNRKG--ADVTILV 125 (448)
T ss_pred EecCCCCC-----------------hHHHHHHHHHhcCc-CCe-EEEEeCCcccCCHHHHHHHHHHHHhcC--CeEEEEE
Confidence 55666777 999999 677752 356 88877 232 34 778887777 8889988
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHH-HHHHHhhccc-ccccccccccccCC
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIF-QNIAAVFQSK-QDEFYNGNYMVNGK 317 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il-~~l~~~~~~~-~~e~~~~~~~~~~~ 317 (523)
.+.. ++..||.+..| + +++ .+.|||... ..+++++|+|+|++++| +.+++..... ++++++
T Consensus 126 ~~~~--~~~~~g~v~~d-~-g~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~-------- 192 (448)
T PRK14357 126 ADLE--DPTGYGRIIRD-G-GKY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYL-------- 192 (448)
T ss_pred EEcC--CCCCcEEEEEc-C-CeE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEH--------
Confidence 8774 56789998877 4 788 888876432 13589999999999976 4455432221 234433
Q ss_pred CCCcccccchhhhhhhhhcCCcEEEEEcchhHhh--hccchhhhhccHHHHhhhcc-cC-Cc-ccccCCCceEecCcEEC
Q psy17795 318 DTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQ--LKSAGSAIYANRHYLQLYKT-RH-PE-RLQCSSQCKTIGDVYIH 392 (523)
Q Consensus 318 ~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~d--Igt~~dyl~an~~~l~~~~~-~~-~~-~~~~~~~~~i~~~~~i~ 392 (523)
+|+++.+. ++.+|...++|.. +++++++..+...+...... .. +. .+.....+.+++++.|+
T Consensus 193 ----------~d~i~~~~---~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig 259 (448)
T PRK14357 193 ----------TDAVNFAE---KVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIG 259 (448)
T ss_pred ----------HHHHHhhh---heeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEEC
Confidence 58887773 3788888898654 55888877665554322110 00 10 11111134677777777
Q ss_pred CCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCC----------------EECCCCEEe-ceEECCCCEECCCcEE
Q psy17795 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGA----------------SIGNHSLVL-NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 393 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~----------------~Ig~~~~I~-~~iIg~~~~Ig~~~~i 455 (523)
+++.|++++.|++++.||++|+|+++|.|.+|+||++| .|++++.|. +++||++|.||+++.+
T Consensus 260 ~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i 339 (448)
T PRK14357 260 MDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEI 339 (448)
T ss_pred CCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceee
Confidence 77777777777777777777777776666555555544 445555553 4666666666666655
Q ss_pred cCCCCCCCC------CCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCCcEeCCC
Q psy17795 456 EGTPCDPNP------NKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPYKELTRS 516 (523)
Q Consensus 456 ~~~~~~~~~------~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~~~ 516 (523)
.++.++.+. ..+.+.||+++.||+++.+.. ..++||+++.||.+++| .++.|++++.|..+
T Consensus 340 ~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~ 419 (448)
T PRK14357 340 KKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITED 419 (448)
T ss_pred eccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCc
Confidence 433222221 112456778888877654421 12667777777777655 45666777777777
Q ss_pred CCCccc
Q psy17795 517 FKNEIL 522 (523)
Q Consensus 517 ~~~~~i 522 (523)
+|+..+
T Consensus 420 v~~~~~ 425 (448)
T PRK14357 420 VPPYSL 425 (448)
T ss_pred CCCCcE
Confidence 775543
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=324.86 Aligned_cols=374 Identities=15% Similarity=0.258 Sum_probs=255.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|.+|||||| +|+||++ .+||+|+|++|+|||+|+|++|.+. ++++++|++++..+.+.+++.+. + .+.+
T Consensus 2 ~~~iIlAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~----~-~i~~ 70 (450)
T PRK14360 2 LAVAILAAG--KGTRMKS---SLPKVLHPLGGKSLVERVLDSCEEL-KPDRRLVIVGHQAEEVEQSLAHL----P-GLEF 70 (450)
T ss_pred ceEEEEeCC--CCccCCC---CCChhcCEECChhHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhccc----C-CeEE
Confidence 568999999 9999987 8899999999999999999999986 99999999999888888888652 1 3556
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cch--HH--HHHHHHhcCCcceEEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IRS--DV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~~--D~--l~~~h~~~~~~~~~tv~~ 243 (523)
+.+....| ++++++ .+++...+++ +++++ ++. ++ +++.|++.+ ++++++.
T Consensus 71 v~~~~~~G-----------------~~~sv~~~~~~l~~~~~~-vlV~~~D~P~i~~~~l~~ll~~~~~~~--~~~~~~~ 130 (450)
T PRK14360 71 VEQQPQLG-----------------TGHAVQQLLPVLKGFEGD-LLVLNGDVPLLRPETLEALLNTHRSSN--ADVTLLT 130 (450)
T ss_pred EEeCCcCC-----------------cHHHHHHHHHHhhccCCc-EEEEeCCccccCHHHHHHHHHHHHhcC--CcEEEEE
Confidence 66555566 889988 6666532356 77776 222 33 777787776 7777776
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCC----CcccceeeeeEEEeeHHHHHHH-HHhhccc-ccccccccccccCC
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPS----TFVSTLVNCGVYLFSLDIFQNI-AAVFQSK-QDEFYNGNYMVNGK 317 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~----~~~~~l~~~Giyif~~~il~~l-~~~~~~~-~~e~~~~~~~~~~~ 317 (523)
.+.+ ++..||.+..|++ ++|.++.|||. ...++++++|+|+|+++.|..+ ++..... ..|+++
T Consensus 131 ~~~~--~~~~~g~~~~d~~-g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~-------- 199 (450)
T PRK14360 131 ARLP--NPKGYGRVFCDGN-NLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYL-------- 199 (450)
T ss_pred EecC--CCCCccEEEECCC-CCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeH--------
Confidence 6653 5667999988876 89999999975 2356799999999999877554 3332221 234443
Q ss_pred CCCcccccchhhhhhhhhcCCcEEEEEcchhH--hhhccchhhhhccHHHHhhhcc--cCCcccccCCC-ceEecCcEEC
Q psy17795 318 DTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWW--SQLKSAGSAIYANRHYLQLYKT--RHPERLQCSSQ-CKTIGDVYIH 392 (523)
Q Consensus 318 ~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w--~dIgt~~dyl~an~~~l~~~~~--~~~~~~~~~~~-~~i~~~~~i~ 392 (523)
+|+++.+.+ +..+...++| ..+++++++..+...+...... ..+....-++. ..+++++.++
T Consensus 200 ----------td~i~~~~~---~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig 266 (450)
T PRK14360 200 ----------TDTVSLLDP---VMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELG 266 (450)
T ss_pred ----------HHHHHHHhh---ceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEEC
Confidence 677877743 4556666665 4588999988877765543221 11111111123 2466666677
Q ss_pred CCCEECCCCEECCCcEECCCCEECCCCEEee----------------eEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q psy17795 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----------------SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 393 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----------------s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i 455 (523)
+++.|++++.|+++++||++|.|++++.|.+ ++||++|.|+++|+|. +++||++|.||+++.|
T Consensus 267 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i 346 (450)
T PRK14360 267 PDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEI 346 (450)
T ss_pred CCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEE
Confidence 7777766666666666666666666666553 5566677777777776 6888888888888877
Q ss_pred cCCCCCCCC------CCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCCcEeCCC
Q psy17795 456 EGTPCDPNP------NKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPYKELTRS 516 (523)
Q Consensus 456 ~~~~~~~~~------~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~~~ 516 (523)
.++.++.+. ..+.+.|+++|.||.++.+.. ..++||++|.||++++| .+++|++++.|+.+
T Consensus 347 ~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~ 426 (450)
T PRK14360 347 KKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKD 426 (450)
T ss_pred eccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECcc
Confidence 654443321 123456788888887765432 12566777777777655 35667777778888
Q ss_pred CCCccc
Q psy17795 517 FKNEIL 522 (523)
Q Consensus 517 ~~~~~i 522 (523)
+|+..+
T Consensus 427 ~~~~~~ 432 (450)
T PRK14360 427 VPDNSL 432 (450)
T ss_pred CCCCCE
Confidence 876544
|
|
| >KOG1461|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=308.93 Aligned_cols=358 Identities=20% Similarity=0.284 Sum_probs=271.9
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccC----
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYK---- 168 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~---- 168 (523)
..+||+||-. .-+||+|+|...|+.|||+.+.|||+|+|++|.+. |+++++|++.-+..++.+|+.+ ++|.
T Consensus 24 rLqAIllaDs--f~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~a-gV~eVfvfc~~~~~qi~e~i~~--sew~~~~~ 98 (673)
T KOG1461|consen 24 RLQAILLADS--FETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERA-GVEEVFVFCSAHAAQIIEYIEK--SEWYLPMS 98 (673)
T ss_pred ceEEEEEecc--chhcccccccCCCceEeeecCchHHHHHHHHHHhc-CceEEEEEecccHHHHHHHHhh--cccccccc
Confidence 3589999999 99999999999999999999999999999999996 9999999998888999999998 3443
Q ss_pred eeEEEEecccccchhhhhcccccccccCCCchhHHH-Hh--hcccCCcceEEEEc--cc--hHH--HHHHHHhcCC---c
Q psy17795 169 INIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RN--SLHWVQEAVYFTLE--IR--SDV--VILMHSLYSM---A 236 (523)
Q Consensus 169 ~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~--~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~---~ 236 (523)
..+..+-..+... .++++| .+ .+. .++ |++++ ++ +++ +++.|+.++. +
T Consensus 99 ~~v~ti~s~~~~S-----------------~GDamR~id~k~li--tgD-FiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~ 158 (673)
T KOG1461|consen 99 FIVVTICSGESRS-----------------VGDAMRDIDEKQLI--TGD-FILVSGDTVSNMPLRNVLEEHRKRRKEDKD 158 (673)
T ss_pred ceEEEEcCCCcCc-----------------HHHHHHHHHhccee--ecc-eEEEeCCeeecCchHHHHHHHHHHhhhCcc
Confidence 2333333322222 788988 22 222 245 77777 44 455 8888864321 3
Q ss_pred ceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEee----c-----CC---------CcccceeeeeEEEeeHHHHHHHHH
Q psy17795 237 ILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVE----K-----PS---------TFVSTLVNCGVYLFSLDIFQNIAA 298 (523)
Q Consensus 237 ~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~e----k-----p~---------~~~~~l~~~Giyif~~~il~~l~~ 298 (523)
+.|||+..+........--.+.+|..|.++++|.+ + |. ..+.++.+++|.+|+++++.++.+
T Consensus 159 ~iMTmv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~d 238 (673)
T KOG1461|consen 159 AIMTMVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTD 238 (673)
T ss_pred ceEEEEEeccccccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhh
Confidence 67888887653111122235667888899999975 2 10 246889999999999999999999
Q ss_pred hhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcch--hHhhhccchhhhhccHHHHhhhcccCCcc
Q psy17795 299 VFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSK--WWSQLKSAGSAIYANRHYLQLYKTRHPER 376 (523)
Q Consensus 299 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g--~w~dIgt~~dyl~an~~~l~~~~~~~~~~ 376 (523)
+|+.. ...+|...+|-.-+-..+++++..+. |...+...+.|-..+++++++|. +|..
T Consensus 239 NFDyq------------------~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~--YP~V 298 (673)
T KOG1461|consen 239 NFDYQ------------------TRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWT--YPLV 298 (673)
T ss_pred cccce------------------ehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhc--cccc
Confidence 87643 12233344443322234588887765 88899999999999999999875 3322
Q ss_pred cccC-----CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECC
Q psy17795 377 LQCS-----SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGN 451 (523)
Q Consensus 377 ~~~~-----~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~ 451 (523)
+... +-..-.-+.+-++.+.+.+++.++.++.||.++.||.++.|.+|+||.||.||.+++|.++.||++|+||+
T Consensus 299 pd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igd 378 (673)
T KOG1461|consen 299 PDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGD 378 (673)
T ss_pred ccccCCCCceeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECC
Confidence 2211 11233356777889999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEE
Q psy17795 452 WSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIV 507 (523)
Q Consensus 452 ~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v 507 (523)
||.|.. +.|++++.|++++.+.+| +|||.++++|++-++ .+++|
T Consensus 379 nc~I~~-----------aii~d~v~i~~~~~l~~g-~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 379 NCRIDH-----------AIICDDVKIGEGAILKPG-SVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred CceEee-----------eEeecCcEeCCCcccCCC-cEEeeeeEeCCCccccccccc
Confidence 999975 577888888888888888 788888888888777 55554
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=293.80 Aligned_cols=230 Identities=17% Similarity=0.180 Sum_probs=188.0
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh-----
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ----- 165 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~----- 165 (523)
|..|+||||||| +||||+|+|..+||||+||+|+|||+|+|+.+.++ |+++|+|+++|..+++.+|+.....
T Consensus 1 ~~~mkavILAaG--~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~-Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~ 77 (297)
T TIGR01105 1 MTNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLL 77 (297)
T ss_pred CCceEEEEECCC--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEecCChHHHHHHHhchHHHHHHH
Confidence 446899999999 99999999999999999999999999999999986 9999999999999999999964210
Q ss_pred ----------------ccCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cch--
Q psy17795 166 ----------------EYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRS-- 223 (523)
Q Consensus 166 ----------------~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~-- 223 (523)
.+++++.++.|++++| ||+|++ ++++.+ ++ |+|++ .++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~lG-----------------tg~Av~~a~~~l~~--~~-flvv~gD~l~~~ 137 (297)
T TIGR01105 78 EQRVKRQLLAEVQSICPPGVTIMNVRQAQPLG-----------------LGHSILCARPVVGD--NP-FVVVLPDIIIDD 137 (297)
T ss_pred HHhcchhhhhhhhhcCCCCceEEEeeCCCcCc-----------------hHHHHHHHHHHhCC--CC-EEEEECCeeccc
Confidence 2467788999989999 999999 778862 55 77776 333
Q ss_pred --------HH--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE----cCCCCc---EEEEeecCCCc---ccceeee
Q psy17795 224 --------DV--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR----KQQTSE---ISHYVEKPSTF---VSTLVNC 283 (523)
Q Consensus 224 --------D~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~----d~~~~~---V~~~~ekp~~~---~~~l~~~ 283 (523)
|+ ++++|.+.+ +.+ +++.+++ +++++||++.. |++ ++ |.++.|||..+ .++++++
T Consensus 138 ~~~~~~~~~l~~li~~~~~~~--~~~-~~~~~~~-~~~~~yGvv~~~~~~d~~-g~v~~I~~~~EKP~~~~~~~s~~~~~ 212 (297)
T TIGR01105 138 ATADPLRYNLAAMIARFNETG--RSQ-VLAKRMP-GDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAV 212 (297)
T ss_pred cccccchhHHHHHHHHHHHhC--CcE-EEEEEcC-CCCccceEEEecccccCC-CCeeeEeEEEECCCCcccCCcCEEEE
Confidence 45 788887665 555 4444443 35789999988 334 54 58999999654 4789999
Q ss_pred eEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccH
Q psy17795 284 GVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANR 363 (523)
Q Consensus 284 Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~ 363 (523)
|+|+|++++|+.+........+|+++ +|+++.++++++++++..+|+|.|+|+|++|++++.
T Consensus 213 GiYi~~~~i~~~l~~~~~~~~ge~~l------------------td~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~ 274 (297)
T TIGR01105 213 GRYVLSADIWAELERTEPGAWGRIQL------------------TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFV 274 (297)
T ss_pred EEEEECHHHHHHHhcCCCCCCCeeeH------------------HHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHH
Confidence 99999999999887644333455554 699999999999999999999999999999999988
Q ss_pred HHH
Q psy17795 364 HYL 366 (523)
Q Consensus 364 ~~l 366 (523)
.+.
T Consensus 275 ~~~ 277 (297)
T TIGR01105 275 KYG 277 (297)
T ss_pred HHH
Confidence 763
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=286.57 Aligned_cols=246 Identities=50% Similarity=0.875 Sum_probs=200.8
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
|||||||.|+|+||+|+|..+||||+||+|+|||+|+|+++.+.+|+++|+|++++..+++.+|+.+..+.+++.+.++.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 58999985569999999999999999999999999999999983499999999999999999999874334677787777
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEEee
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMATEA 246 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~~~ 246 (523)
+.+++| |+++++ ++++. ..+++ |||++ ++ .|+ ++++|++.+ +++|+++.++
T Consensus 81 ~~~~~G-----------------t~~al~~a~~~l~~~~~~~-~lv~~gD~~~~~dl~~~~~~h~~~~--~~~tl~~~~~ 140 (257)
T cd06428 81 EYKPLG-----------------TAGGLYHFRDQILAGNPSA-FFVLNADVCCDFPLQELLEFHKKHG--ASGTILGTEA 140 (257)
T ss_pred CCccCC-----------------cHHHHHHHHHHhhccCCCC-EEEEcCCeecCCCHHHHHHHHHHcC--CCEEEEEEEc
Confidence 777788 999998 77775 22467 88888 43 345 889998887 8899998877
Q ss_pred CCCCCcceeEEEEc-CCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccccc
Q psy17795 247 TRQQSVYYGCIVRK-QQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQ 325 (523)
Q Consensus 247 ~~~~~~~~g~v~~d-~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 325 (523)
+.+++..||++..| ++ ++|.+|.|||....++++++|+|+|++++|+.+.+....+.+|++....+. ++...+..+
T Consensus 141 ~~~~~~~yg~v~~d~~~-g~v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~--~~~~~~~~~ 217 (257)
T cd06428 141 SREQASNYGCIVEDPST-GEVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNN--REGRAEVIR 217 (257)
T ss_pred cccccccccEEEEeCCC-CeEEEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccccccccccccc--cccccceee
Confidence 54567899999888 44 899999999988788999999999999999988775555455655321111 111123456
Q ss_pred chhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHH
Q psy17795 326 LEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRH 364 (523)
Q Consensus 326 ~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~ 364 (523)
+.+|+++.+++++++++|.++|||.|++++++|+++|+.
T Consensus 218 ~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 218 LEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred ehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhc
Confidence 778999999999999999999999999999999999875
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >KOG1462|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=286.03 Aligned_cols=351 Identities=20% Similarity=0.256 Sum_probs=220.2
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~ 169 (523)
|++|++|++|+| .||||.-++...||+||||+|+|||+|+|++|.+. |+++|+|++.. ....|+.++.+. ....+
T Consensus 7 ~~efqavV~a~~--ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~-gfteiiVv~~e~e~~~i~~al~~~-~~l~~ 82 (433)
T KOG1462|consen 7 MSEFQAVVLAGG--GGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQA-GFTEIIVVVNEDEKLDIESALGSN-IDLKK 82 (433)
T ss_pred hHHhhhheeecC--CceechhhhhhcchhhcccCCcceeeeehhHHHhc-CCeEEEEEecHHHHHHHHHHHhcC-Ccccc
Confidence 578899999999 99999999999999999999999999999999997 99999999987 566788888653 11222
Q ss_pred e---EEEEec-ccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cchHH----HHHHHHhcCCcc
Q psy17795 170 N---IRYLQE-FWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRSDV----VILMHSLYSMAI 237 (523)
Q Consensus 170 ~---i~~~~~-~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~D~----l~~~h~~~~~~~ 237 (523)
+ +.+-.. .+.+| ||++|+ .+.+. .++ |||++ ++.|. +++.++..+ +
T Consensus 83 ~~~~v~ip~~~~~d~g-----------------tadsLr~Iy~kik--S~D-flvlsCD~Vtdv~l~~lvd~FR~~d--~ 140 (433)
T KOG1462|consen 83 RPDYVEIPTDDNSDFG-----------------TADSLRYIYSKIK--SED-FLVLSCDFVTDVPLQPLVDKFRATD--A 140 (433)
T ss_pred cccEEEeecccccccC-----------------CHHHHhhhhhhhc--cCC-EEEEecccccCCCcHHHHHHHhccC--h
Confidence 2 222211 12456 999999 55565 356 99988 44444 778777665 4
Q ss_pred eEEEEEEeeCC---------CCCcceeEEEEcCCCCcEEEEeec-----------------CC-CcccceeeeeEEEeeH
Q psy17795 238 LVTVMATEATR---------QQSVYYGCIVRKQQTSEISHYVEK-----------------PS-TFVSTLVNCGVYLFSL 290 (523)
Q Consensus 238 ~~tv~~~~~~~---------~~~~~~g~v~~d~~~~~V~~~~ek-----------------p~-~~~~~l~~~Giyif~~ 290 (523)
.+.++...... .....+.++-+++.|+|+.-.... |. ...++|.++++|+|+.
T Consensus 141 slamli~~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~ 220 (433)
T KOG1462|consen 141 SLAMLIGNALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKH 220 (433)
T ss_pred hHhHHhccccccccccCcccccccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHH
Confidence 44433332210 011223444556665664432111 11 2357899999999999
Q ss_pred HHHHHHHHhhc--ccccccc--c-cc-ccccCCCCCcccccchh--hhhhhhh-----cCCcEEEEEc--chhHhhhccc
Q psy17795 291 DIFQNIAAVFQ--SKQDEFY--N-GN-YMVNGKDTDFNHIQLEK--EIIMPLA-----GSGKAYVYQT--SKWWSQLKSA 355 (523)
Q Consensus 291 ~il~~l~~~~~--~~~~e~~--~-~~-~~~~~~~~~~~~~~~~~--dil~~li-----~~g~v~~~~~--~g~w~dIgt~ 355 (523)
++++.|.+... +-+++|. + .. ++....+.. ...++.. .+-+... +.-++++|.. ..-+...+|.
T Consensus 221 ~v~d~l~~~~sisSfk~~f~P~lvkkQ~q~~~~~~~-~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL 299 (433)
T KOG1462|consen 221 WVIDLLSEKESISSFKADFLPYLVKKQFQKNPPLKK-NETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTL 299 (433)
T ss_pred HHHHHHhcCCcceeecccccchhhhhhhhcCCCccc-ccccccCCccccCcccccCcccceeeeEEEccCccceEEecch
Confidence 99999975321 1133331 1 00 000000000 0000000 0000000 1122455543 3345578889
Q ss_pred hhhhhccH--HHHhhhcccCCcccccCCCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEEC
Q psy17795 356 GSAIYANR--HYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIG 433 (523)
Q Consensus 356 ~dyl~an~--~~l~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig 433 (523)
..|+++|+ .+........+ +...+ ...+.++..++|+++|.|++++.|..|+||.+|.||
T Consensus 300 ~~y~eiN~~k~~~~l~~e~~~----------~k~~~--------~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig 361 (433)
T KOG1462|consen 300 LSYMEINRDKKLKKLCSEAKF----------VKNYV--------KKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIG 361 (433)
T ss_pred HHHHhhhHHHHHHHhcccccc----------ccchh--------hheeccchhhccCCCceecccceeeeeeecCCcccc
Confidence 99999995 23221111111 00000 011445567777788888888888888888888888
Q ss_pred CCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEe
Q psy17795 434 NHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKEL 513 (523)
Q Consensus 434 ~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i 513 (523)
+.+.|.+|+|++|++||+||.|.+ ||||.|+.||+|+.+.||.|+|+..|
T Consensus 362 ~~~~v~nSilm~nV~vg~G~~Ien------------------------------sIIg~gA~Ig~gs~L~nC~Ig~~yvV 411 (433)
T KOG1462|consen 362 ERVKVANSILMDNVVVGDGVNIEN------------------------------SIIGMGAQIGSGSKLKNCIIGPGYVV 411 (433)
T ss_pred CCcEEEeeEeecCcEecCCcceec------------------------------ceecccceecCCCeeeeeEecCCcEE
Confidence 888888888888888888888877 77788888888888888888888888
Q ss_pred CCC
Q psy17795 514 TRS 516 (523)
Q Consensus 514 ~~~ 516 (523)
...
T Consensus 412 eak 414 (433)
T KOG1462|consen 412 EAK 414 (433)
T ss_pred ccc
Confidence 743
|
|
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=285.09 Aligned_cols=229 Identities=18% Similarity=0.215 Sum_probs=192.3
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEcc-CChHHHHHHHHhhhhccCee
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY-YPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~-~~~~~i~~~l~~~~~~~~~~ 170 (523)
-.|+||||||| .||||+|+|..+||||+||+|||||+|+|+.|..+ |+++|+|++. +..+.+++|+++. +.|+++
T Consensus 2 ~~~kaIILAgG--~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~a-Gi~~I~ii~~~~~~~~~~~~l~~g-~~~g~~ 77 (292)
T PRK15480 2 KTRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDG-SQWGLN 77 (292)
T ss_pred CceEEEEECCC--cccccCcccCCCCceEeEECCEEHHHHHHHHHHHC-CCCEEEEEecCCchHHHHHHHcCc-cccCce
Confidence 35899999999 99999999999999999999999999999999986 9999997765 4667899999873 568999
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVM 242 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~ 242 (523)
+.|+.|++++| +|+|+. ++++.+ ++++++++ ++ .|+ +++.|.+.+ +++|++
T Consensus 78 i~y~~q~~~~G-----------------ta~Al~~a~~~i~~--~~~~lv~gD~i~~~~~l~~ll~~~~~~~--~~~tv~ 136 (292)
T PRK15480 78 LQYKVQPSPDG-----------------LAQAFIIGEEFIGG--DDCALVLGDNIFYGHDLPKLMEAAVNKE--SGATVF 136 (292)
T ss_pred eEEEECCCCCC-----------------HHHHHHHHHHHhCC--CCEEEEECCeeeeccCHHHHHHHHHhCC--CCeEEE
Confidence 99999988999 999998 778863 34145554 33 355 788887776 788888
Q ss_pred EEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcc
Q psy17795 243 ATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFN 322 (523)
Q Consensus 243 ~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 322 (523)
+.+++ ++++||++..|++ ++|.+|.|||..+.++++++|+|+|++++++.+++..++.++|+++
T Consensus 137 ~~~v~--~p~~yGvv~~d~~-g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~i------------- 200 (292)
T PRK15480 137 AYHVN--DPERYGVVEFDQN-GTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEI------------- 200 (292)
T ss_pred EEEcC--CcccCcEEEECCC-CcEEEEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEh-------------
Confidence 88774 6789999999976 8999999999888899999999999999999887755544566665
Q ss_pred cccchhhhhhhhhcCCcEE-EEEcchh-HhhhccchhhhhccHHHH
Q psy17795 323 HIQLEKEIIMPLAGSGKAY-VYQTSKW-WSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 323 ~~~~~~dil~~li~~g~v~-~~~~~g~-w~dIgt~~dyl~an~~~l 366 (523)
+|+++.++++|++. .+..+++ |.|+||+++|++|++.+.
T Consensus 201 -----td~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 201 -----TDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred -----HHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 79999999989854 4466784 999999999999998775
|
|
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=282.27 Aligned_cols=229 Identities=17% Similarity=0.187 Sum_probs=187.4
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhh------
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV------ 164 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~------ 164 (523)
|..|+||||||| +||||+|+|..+||||+||+|||||+|+|+++.++ |+++|+|++++..+.+.+|+....
T Consensus 1 ~~~mkavIlAaG--~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~ 77 (297)
T PRK10122 1 MTNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLL 77 (297)
T ss_pred CCceEEEEECCc--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCChHHHHHHHhcchhHHHHH
Confidence 447899999999 99999999999999999999999999999999996 999999999999999999996411
Q ss_pred ---------------hccCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cch--
Q psy17795 165 ---------------QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRS-- 223 (523)
Q Consensus 165 ---------------~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~-- 223 (523)
..+++++.++.|++++| ||+|++ ++++. +++ |+|++ .++
T Consensus 78 ~~~~k~~~l~~~~~~~~~~~~i~~~~q~~~lG-----------------tg~al~~a~~~l~--~~~-fvvi~gD~l~~~ 137 (297)
T PRK10122 78 EQRVKRQLLAEVQSICPPGVTIMNVRQGQPLG-----------------LGHSILCARPAIG--DNP-FVVVLPDVVIDD 137 (297)
T ss_pred hhcchhhhHHhhhhccCCCceEEEeecCCcCc-----------------hHHHHHHHHHHcC--CCC-EEEEECCeeccC
Confidence 01356788898988999 999999 78885 245 66666 333
Q ss_pred --------HH--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEc----CCCC---cEEEEeecCCCc---ccceeee
Q psy17795 224 --------DV--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRK----QQTS---EISHYVEKPSTF---VSTLVNC 283 (523)
Q Consensus 224 --------D~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d----~~~~---~V~~~~ekp~~~---~~~l~~~ 283 (523)
|+ ++++|.+.+ ++++ ++.... +++.+||++..| ++ + +|.+|.|||..+ .++++++
T Consensus 138 ~~~~~~~~dl~~li~~h~~~~--~~~~-~~~~~~-~~~~~yGvv~~d~~~~~~-g~v~~I~~~~EKp~~~~~~~s~~~~~ 212 (297)
T PRK10122 138 ASADPLRYNLAAMIARFNETG--RSQV-LAKRMP-GDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAV 212 (297)
T ss_pred ccccccchhHHHHHHHHHHhC--CcEE-EEEECC-CCCCCceEEEecCcccCC-CCeeeEEEEEECCCCcccCCccEEEE
Confidence 56 888898776 6644 444443 367899999986 34 5 789999999754 3789999
Q ss_pred eEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccH
Q psy17795 284 GVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANR 363 (523)
Q Consensus 284 Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~ 363 (523)
|+|+|++++|+.+.+......+|+++ +|+++.+++++++.+|..+|+|.|+|+|++|++++.
T Consensus 213 GiYi~~~~i~~~l~~~~~~~~~e~~l------------------td~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~ 274 (297)
T PRK10122 213 GRYVLSADIWPELERTEPGAWGRIQL------------------TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFV 274 (297)
T ss_pred EEEEECHHHHHHHHhCCCCCCCeeeH------------------HHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHH
Confidence 99999999999887643322344443 699999999999999999999999999999999999
Q ss_pred HH
Q psy17795 364 HY 365 (523)
Q Consensus 364 ~~ 365 (523)
.+
T Consensus 275 ~~ 276 (297)
T PRK10122 275 KY 276 (297)
T ss_pred HH
Confidence 87
|
|
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=273.18 Aligned_cols=225 Identities=28% Similarity=0.479 Sum_probs=188.6
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|++|||||| +|+||+|+|...||||+|++|+|||+|+++++.+. |+++++|++++..+++.+|+.+....+++.+.+
T Consensus 1 m~~iIlAaG--~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~-g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~ 77 (233)
T cd06425 1 MKALILVGG--YGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKA-GVKEIILAVNYRPEDMVPFLKEYEKKLGIKITF 77 (233)
T ss_pred CcEEEecCC--CccccCccccCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEEeeeCHHHHHHHHhcccccCCeEEEe
Confidence 689999999 99999999999999999999999999999999986 999999999998889999998642345667766
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cch--HH--HHHHHHhcCCcceEEEEEEe
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRS--DV--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~--D~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
..+.++.| ++++++ ++++....++ |+|++ +++ |+ ++++|++.+ +++++++.+
T Consensus 78 ~~~~~~~G-----------------~~~al~~a~~~~~~~~~~-~lv~~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 137 (233)
T cd06425 78 SIETEPLG-----------------TAGPLALARDLLGDDDEP-FFVLNSDVICDFPLAELLDFHKKHG--AEGTILVTK 137 (233)
T ss_pred ccCCCCCc-----------------cHHHHHHHHHHhccCCCC-EEEEeCCEeeCCCHHHHHHHHHHcC--CCEEEEEEE
Confidence 66666777 999999 6777632356 88877 443 44 888999888 888998887
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccccc
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQ 325 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 325 (523)
.+ ++..||++..|+++++|.++.|||..+.++++++|+|+|++++|+.+.+. ..+
T Consensus 138 ~~--~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~-----------------------~~~ 192 (233)
T cd06425 138 VE--DPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILNPSVLDRIPLR-----------------------PTS 192 (233)
T ss_pred cC--CccccCeEEEcCCCCEEEEEEECCCCCCCCEEEEEEEEECHHHHHhcccC-----------------------ccc
Confidence 64 45789999998733899999999987778899999999999999877541 123
Q ss_pred chhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 326 LEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 326 ~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
++.++++.+++++++.+|.++++|.|++++++|+++++.+|
T Consensus 193 ~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 193 IEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred chhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 44689999999999999999999999999999999998764
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=272.19 Aligned_cols=228 Identities=24% Similarity=0.446 Sum_probs=186.6
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEE-EEccCChHHHHHHHHhhhhccCeeEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEII-ILGYYPSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~-vv~~~~~~~i~~~l~~~~~~~~~~i~ 172 (523)
|||||||| +||||+|+|..+||||+|++|+ |||+|+|+++.+. |+++++ |+++++.+.+.+|+++. ..+++++.
T Consensus 1 kavIla~G--~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~-g~~~ii~V~~~~~~~~i~~~~~~~-~~~~~~i~ 76 (248)
T PF00483_consen 1 KAVILAGG--KGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANA-GIKEIIVVVNGYKEEQIEEHLGSG-YKFGVKIE 76 (248)
T ss_dssp EEEEEEES--CCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHT-TCSEEEEEEETTTHHHHHHHHTTS-GGGTEEEE
T ss_pred CEEEECCC--CCccCchhhhccccccceecCCCcchhhhhhhhccc-CCceEEEEEeeccccccccccccc-ccccccce
Confidence 69999999 9999999999999999999999 9999999999996 999955 55557888999999984 45788899
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccC--CcceEEEEc--cc--hHH--HHHHHHhcCCcc--eEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWV--QEAVYFTLE--IR--SDV--VILMHSLYSMAI--LVT 240 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~--~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~--~~t 240 (523)
++.+++++| ||+||+ .+++... +++ ||+++ ++ .|+ ++++|++.+ + .++
T Consensus 77 ~i~~~~~~G-----------------ta~al~~a~~~i~~~~~~~~-~lv~~gD~i~~~~~~~~l~~~~~~~--~~~~~~ 136 (248)
T PF00483_consen 77 YIVQPEPLG-----------------TAGALLQALDFIEEEDDDED-FLVLNGDIIFDDDLQDMLEFHRESN--ADGTVT 136 (248)
T ss_dssp EEEESSSSC-----------------HHHHHHHTHHHHTTSEE-SE-EEEETTEEEESTTHHHHHHHHHHHS--SCESEE
T ss_pred eeecccccc-----------------hhHHHHHHHHHhhhccccce-EEEEeccccccchhhhHHHhhhccc--cccccc
Confidence 998888888 999999 7777632 245 88888 33 355 899999887 5 344
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcc-cceeeeeEEEeeHHHHHHHHHhhccc-ccccccccccccCCC
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFV-STLVNCGVYLFSLDIFQNIAAVFQSK-QDEFYNGNYMVNGKD 318 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~-~~l~~~Giyif~~~il~~l~~~~~~~-~~e~~~~~~~~~~~~ 318 (523)
+...+. ++++.||.+..|++ ++|.+|.|||+... +.++++|+|+|++++|+.+.+..... .++
T Consensus 137 ~~~~~~--~~~~~~g~v~~d~~-~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~------------ 201 (248)
T PF00483_consen 137 LLVVPV--EDPSRYGVVEVDED-GRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGE------------ 201 (248)
T ss_dssp EEEEES--SGGGGSEEEEEETT-SEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSS------------
T ss_pred cccccc--cccccceeeeeccc-eeEEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhh------------
Confidence 444443 46789999999986 89999999999877 88999999999999999884422221 222
Q ss_pred CCcccccchhhhhhhhhcCCc-EEEEEcch--hHhhhccchhhhhccHHHHh
Q psy17795 319 TDFNHIQLEKEIIMPLAGSGK-AYVYQTSK--WWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 319 ~~~~~~~~~~dil~~li~~g~-v~~~~~~g--~w~dIgt~~dyl~an~~~l~ 367 (523)
++..|+++.+++.+. +.++..++ +|.|+|++++|++|++.+++
T Consensus 202 ------~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 202 ------DFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp ------HHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred ------hHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 334799999999986 66778888 89999999999999998874
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=276.59 Aligned_cols=225 Identities=16% Similarity=0.206 Sum_probs=188.2
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEcc-CChHHHHHHHHhhhhccCeeEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY-YPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|||||||| .||||+|+|..+||||+||+|||||+|+|+.+..+ |+++|+|++. +..+.+++++++ ++.|++++.+
T Consensus 1 kaIILAgG--~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~a-Gi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~ 76 (286)
T TIGR01207 1 KGIILAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSY 76 (286)
T ss_pred CEEEECCC--CCccCCcccCCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEecCCcHHHHHHHhcc-ccccCceEEE
Confidence 58999999 99999999999999999999999999999999986 9999987775 577789999987 3568999999
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cch--HH--HHHHHHhcCCcceEEEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IRS--DV--VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~~--D~--l~~~h~~~~~~~~~tv~~~ 244 (523)
+.|++++| ||+|++ ++++.+ ++ +++++ ++. |+ +++.|.+.+ +++++++.
T Consensus 77 ~~q~~~~G-----------------ta~al~~a~~~l~~--~~-~~li~gD~i~~~~~l~~ll~~~~~~~--~~~ti~~~ 134 (286)
T TIGR01207 77 AVQPSPDG-----------------LAQAFIIGEDFIGG--DP-SALVLGDNIFYGHDLSDLLKRAAARE--SGATVFAY 134 (286)
T ss_pred EEccCCCC-----------------HHHHHHHHHHHhCC--CC-EEEEECCEeccccCHHHHHHHHHhcC--CCcEEEEE
Confidence 99888899 999999 778863 44 44444 333 55 788887766 78888888
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccc
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 324 (523)
+++ ++.+||++..|++ ++|.++.|||..+.++++++|+|+|++++++.+.+..++.++|+++
T Consensus 135 ~v~--~p~~yGvv~~d~~-g~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~ei--------------- 196 (286)
T TIGR01207 135 QVS--DPERYGVVEFDSN-GRAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEI--------------- 196 (286)
T ss_pred Ecc--CHHHCceEEECCC-CeEEEEEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeH---------------
Confidence 874 5789999999976 8999999999888899999999999999998887654433556554
Q ss_pred cchhhhhhhhhcCCcEEEEEc-chh-HhhhccchhhhhccHHHH
Q psy17795 325 QLEKEIIMPLAGSGKAYVYQT-SKW-WSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 325 ~~~~dil~~li~~g~v~~~~~-~g~-w~dIgt~~dyl~an~~~l 366 (523)
+|+++.++++|++.+... +++ |.|+||+++|++|+..+.
T Consensus 197 ---tdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 197 ---TDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred ---HHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 799999999887655544 676 999999999999988764
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=269.32 Aligned_cols=225 Identities=19% Similarity=0.201 Sum_probs=185.9
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCeeEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~ 172 (523)
|++|||||| +|+||+|+|..+||||+|++|+|||+|+|+++.+. |+++|+||+++ ..+++.+|+.+. +.|++++.
T Consensus 1 m~~iIlAaG--~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~l~~~-~~~~~~i~ 76 (240)
T cd02538 1 MKGIILAGG--SGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPEDLPLFKELLGDG-SDLGIRIT 76 (240)
T ss_pred CeEEEEcCc--CcccCCccccCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEeCcchHHHHHHHHhcc-cccCceEE
Confidence 689999999 99999999999999999999999999999999986 99999998865 567899999863 56788887
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc--hHH--HHHHHHhcCCcceEEEEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR--SDV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~--~D~--l~~~h~~~~~~~~~tv~~ 243 (523)
+..+.++.| ++++++ ++++. .++ |++++ ++ .|+ +++.|.+.+ +++++++
T Consensus 77 ~~~~~~~~G-----------------~~~al~~a~~~~~--~~~-~lv~~gD~~~~~~~~~~~~~~~~~~~--~~~~~~~ 134 (240)
T cd02538 77 YAVQPKPGG-----------------LAQAFIIGEEFIG--DDP-VCLILGDNIFYGQGLSPILQRAAAQK--EGATVFG 134 (240)
T ss_pred EeeCCCCCC-----------------HHHHHHHHHHhcC--CCC-EEEEECCEEEccHHHHHHHHHHHhcC--CCcEEEE
Confidence 777766677 999999 77775 255 77766 33 345 778887766 7888888
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccc
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNH 323 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 323 (523)
.+++ ++..||.+..|++ |+|.++.|||....++++++|+|+|++++|+.+.+......+|+++
T Consensus 135 ~~~~--~~~~~g~v~~d~~-g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l-------------- 197 (240)
T cd02538 135 YEVN--DPERYGVVEFDEN-GRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEI-------------- 197 (240)
T ss_pred EECC--chhcCceEEecCC-CcEEEEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEh--------------
Confidence 8764 4678999999976 8999999999877788999999999999998886543322344443
Q ss_pred ccchhhhhhhhhcCCcEEEEEcc--hhHhhhccchhhhhccHHH
Q psy17795 324 IQLEKEIIMPLAGSGKAYVYQTS--KWWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 324 ~~~~~dil~~li~~g~v~~~~~~--g~w~dIgt~~dyl~an~~~ 365 (523)
+++++.++++|++.++.++ ++|.||+++++|+++++.+
T Consensus 198 ----~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 198 ----TDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred ----HHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 6999999998887777665 9999999999999999865
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-31 Score=265.63 Aligned_cols=225 Identities=19% Similarity=0.217 Sum_probs=184.2
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhcc------
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEY------ 167 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~------ 167 (523)
|++||+||| .|+||+|+|..+||||+|++|+|+|+|+|+++.++ |+++|+|++++..+++.+|+.+. ..|
T Consensus 9 ~~aiIlaaG--~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~-~~~~~~l~~ 84 (302)
T PRK13389 9 KKAVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTS-FELEAMLEK 84 (302)
T ss_pred eEEEEECCc--CCccCCCccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHccc-hhhhhhhhh
Confidence 789999999 99999999999999999999999999999999986 99999999999999999999752 112
Q ss_pred ----------------CeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc----
Q psy17795 168 ----------------KINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR---- 222 (523)
Q Consensus 168 ----------------~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~---- 222 (523)
+..+.++.|.+++| |++|++ ++++. +++ |+|++ ++
T Consensus 85 ~~~~~~~~e~~~i~~~~~~i~~~~q~~~~G-----------------tg~Av~~a~~~~~--~~~-~lVl~gD~~~~~~~ 144 (302)
T PRK13389 85 RVKRQLLDEVQSICPPHVTIMQVRQGLAKG-----------------LGHAVLCAHPVVG--DEP-VAVILPDVILDEYE 144 (302)
T ss_pred hhhhHHHHhhhhccccCceEEEeecCCCCC-----------------hHHHHHHHHHHcC--CCC-EEEEeCcceecccc
Confidence 23455666666777 999999 67765 356 88887 33
Q ss_pred -----hHH--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcC------CCCcEEEEeecCC--CcccceeeeeEEE
Q psy17795 223 -----SDV--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQ------QTSEISHYVEKPS--TFVSTLVNCGVYL 287 (523)
Q Consensus 223 -----~D~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~------~~~~V~~~~ekp~--~~~~~l~~~Giyi 287 (523)
.|+ ++++|.+.+ ++ ++++.++ +++..||++..|+ ++++|.+|.|||. ...++++++|+|+
T Consensus 145 ~~~~~~dl~~l~~~h~~~~--~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi 219 (302)
T PRK13389 145 SDLSQDNLAEMIRRFDETG--HS-QIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYV 219 (302)
T ss_pred cccccccHHHHHHHHHhcC--CC-EEEEEEc--ccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEE
Confidence 355 888898776 65 6777666 3577999998763 1257999999997 3457899999999
Q ss_pred eeHHHHHHHHHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHH
Q psy17795 288 FSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 288 f~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~ 365 (523)
|++++|+.|........+|+++ +|+++.+++++++++|..+|+|.|+++|++|++++..+
T Consensus 220 ~~~~il~~l~~~~~~~~~e~~l------------------~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 220 LSADIWPLLAKTPPGAGDEIQL------------------TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred ECHHHHHHHHhCCCCCCCeeeH------------------HHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 9999998886643333445543 79999999988999999999999999999999998876
|
|
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-31 Score=262.04 Aligned_cols=229 Identities=20% Similarity=0.230 Sum_probs=182.7
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh------c-
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ------E- 166 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~------~- 166 (523)
|++|||||| .|+||+|+|..+||||+|++|+|||+|+|+++.+. |+++|+|++++..+++.+|+.+... .
T Consensus 1 mkaiIlAaG--~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 77 (267)
T cd02541 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAA-GIEDIIIVTGRGKRAIEDHFDRSYELEETLEKK 77 (267)
T ss_pred CeEEEEcCC--CCccCCCcccCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhc
Confidence 689999999 99999999999999999999999999999999986 9999999999998999999964210 0
Q ss_pred -------------cCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc-h---H
Q psy17795 167 -------------YKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR-S---D 224 (523)
Q Consensus 167 -------------~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~-~---D 224 (523)
.+.++.++.+++++| ||++++ ++++.. ++ |+|++ ++ . +
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G-----------------t~~al~~~~~~i~~--~~-~lv~~gD~~~~~~~~~ 137 (267)
T cd02541 78 GKTDLLEEVRIISDLANIHYVRQKEPLG-----------------LGHAVLCAKPFIGD--EP-FAVLLGDDLIDSKEPC 137 (267)
T ss_pred ccHHHhhhhhcccCCceEEEEEcCCCCC-----------------hHHHHHHHHHHhCC--Cc-eEEEECCeEEeCCchH
Confidence 144666777777777 999999 777753 56 78877 22 2 3
Q ss_pred H--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcCC---CCcEEEEeecCC--CcccceeeeeEEEeeHHHHHHHH
Q psy17795 225 V--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQ---TSEISHYVEKPS--TFVSTLVNCGVYLFSLDIFQNIA 297 (523)
Q Consensus 225 ~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~---~~~V~~~~ekp~--~~~~~l~~~Giyif~~~il~~l~ 297 (523)
+ +++.|++.+ ++ ++++..++.+++..||.+..|++ +++|.++.|||. ...+.++++|+|+|++++|+.+.
T Consensus 138 ~~~l~~~~~~~~--~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~ 214 (267)
T cd02541 138 LKQLIEAYEKTG--AS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILE 214 (267)
T ss_pred HHHHHHHHHHhC--CC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHH
Confidence 5 888887765 54 45555555445678999998851 258999999986 35678999999999999998886
Q ss_pred HhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 298 AVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 298 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
+......+|+++ .++++.+++++++++|.++++|.|++++++|+++++.+.
T Consensus 215 ~~~~~~~~e~~~------------------~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 215 NTKPGKGGEIQL------------------TDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred hCCCCCCCcEEH------------------HHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 522222233433 699999999889999999999999999999999998764
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=260.36 Aligned_cols=224 Identities=21% Similarity=0.262 Sum_probs=177.3
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh--------
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ-------- 165 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~-------- 165 (523)
|+||||||| .|+||+|+|..+||||+|++|+|||+|+|+++.+. |+++|+|++++..+++.+|+.+...
T Consensus 1 m~avIlAaG--~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 77 (260)
T TIGR01099 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEA-GIEDILIVTGRGKRAIEDHFDTSYELEHQLEKR 77 (260)
T ss_pred CeEEEEccc--CcccCCCcccCCCceeEEECCEEHHHHHHHHHHhC-CCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhh
Confidence 689999999 99999999999999999999999999999999985 9999999999999999999974200
Q ss_pred --c----------cCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---c-ch---H
Q psy17795 166 --E----------YKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---I-RS---D 224 (523)
Q Consensus 166 --~----------~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i-~~---D 224 (523)
. ....+.+..+.+++| |+++++ ++++. +++ |+|++ + .. |
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G-----------------~~~al~~~~~~~~--~~~-~lv~~gD~~~~~~~~~ 137 (260)
T TIGR01099 78 GKEELLKEVRSISPLATIFYVRQKEQKG-----------------LGHAVLCAEPFVG--DEP-FAVILGDDIVVSEEPA 137 (260)
T ss_pred hhHHHHHHhhhccccceEEEEecCCCCC-----------------HHHHHHHHHHhhC--CCC-EEEEeccceecCCcHH
Confidence 0 013455555656667 999999 77774 356 78877 2 22 5
Q ss_pred H--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcC---CCCcEEEEeecCC--CcccceeeeeEEEeeHHHHHHHH
Q psy17795 225 V--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQ---QTSEISHYVEKPS--TFVSTLVNCGVYLFSLDIFQNIA 297 (523)
Q Consensus 225 ~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~---~~~~V~~~~ekp~--~~~~~l~~~Giyif~~~il~~l~ 297 (523)
+ ++++|++.+ +++ +++..++.+++.+||++..|. ++++|.++.|||. ...++++++|+|+|++++|+.+.
T Consensus 138 ~~~l~~~~~~~~--~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~ 214 (260)
T TIGR01099 138 LKQMIDLYEKYG--CSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLE 214 (260)
T ss_pred HHHHHHHHHHhC--CCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHH
Confidence 6 889998877 665 555555545678999998862 2269999999984 34577999999999999998886
Q ss_pred HhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhc
Q psy17795 298 AVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 298 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
.......+++++ +|+++.+++++++++|.++|||.|++++++|+++
T Consensus 215 ~~~~~~~~~~~l------------------~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 215 ETPPGAGGEIQL------------------TDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred hCCCCCCCceeH------------------HHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 533222234433 6899999998899999999999999999999875
|
Built to distinquish between the highly similar genes galU and galF |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=251.04 Aligned_cols=226 Identities=25% Similarity=0.338 Sum_probs=186.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|+||||||| .|+||+|+|...||||+|++|+|||+|+++++.+. |+++|+|++++..+.+++++.+. ..|++++.+
T Consensus 1 m~avIlAaG--~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~i~~ 76 (236)
T cd04189 1 MKGLILAGG--KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREA-GIEDIGIVVGPTGEEIKEALGDG-SRFGVRITY 76 (236)
T ss_pred CeEEEECCC--ccccccccccCCCceeeEECCcchHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHhcch-hhcCCeEEE
Confidence 789999999 99999999999999999999999999999999986 99999999999889999999873 357778878
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEEe
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
+.+..+.| ++++++ ++++. .++ +++++ .+ .|+ +++.|.+.+ +++++++.+
T Consensus 77 ~~~~~~~g-----------------~~~sl~~a~~~i~--~~~-~li~~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 134 (236)
T cd04189 77 ILQEEPLG-----------------LAHAVLAARDFLG--DEP-FVVYLGDNLIQEGISPLVRDFLEED--ADASILLAE 134 (236)
T ss_pred EECCCCCC-----------------hHHHHHHHHHhcC--CCC-EEEEECCeecCcCHHHHHHHHHhcC--CceEEEEEE
Confidence 77766677 999999 66765 345 77777 33 344 777787777 788888877
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccccc
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQ 325 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 325 (523)
.+ ++..||.+..|+ ++|.++.|||....+.+.++|+|+|++++++.+........++|++
T Consensus 135 ~~--~~~~~g~~~~d~--~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~---------------- 194 (236)
T cd04189 135 VE--DPRRFGVAVVDD--GRIVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEI---------------- 194 (236)
T ss_pred CC--CcccceEEEEcC--CeEEEEEECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEH----------------
Confidence 64 457899888874 6999999999766678999999999999998775432222344443
Q ss_pred chhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 326 LEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 326 ~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
+++++.+++.|. +.+++.+++|.+++|+++|.++++.+++
T Consensus 195 --~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 195 --TDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred --HHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 689999998775 9999999999999999999999998875
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=254.80 Aligned_cols=219 Identities=18% Similarity=0.262 Sum_probs=176.8
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh-ccCeeE--
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ-EYKINI-- 171 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~-~~~~~i-- 171 (523)
|||||||| .|+||+|+|..+||||+||+|+|||+|+|+.+.+. |+++|+|++++..+++.+|+.+... ..++++
T Consensus 1 kavilaaG--~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 77 (254)
T TIGR02623 1 KAVILAGG--LGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHH-GINDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 77 (254)
T ss_pred CEEEEcCc--cccccCccccCCCcceeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEe
Confidence 58999999 99999999999999999999999999999999986 9999999999999999999976311 002222
Q ss_pred -----------------EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--H
Q psy17795 172 -----------------RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--V 226 (523)
Q Consensus 172 -----------------~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l 226 (523)
.+..+.+++| |+++++ ++++. .++ |++++ ++ .|+ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------------t~~al~~~~~~i~--~e~-flv~~gD~i~~~dl~~~ 137 (254)
T TIGR02623 78 ADNTMEVHHKRVEPWRVTLVDTGESTQ-----------------TGGRLKRVREYLD--DEA-FCFTYGDGVADIDIKAL 137 (254)
T ss_pred cccccccccccCCccceeeeecCCcCC-----------------cHHHHHHHHHhcC--CCe-EEEEeCCeEecCCHHHH
Confidence 2233334455 999999 77875 356 88888 44 455 8
Q ss_pred HHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccc
Q psy17795 227 ILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDE 306 (523)
Q Consensus 227 ~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e 306 (523)
+++|.+.+ +++|+++.+ ++..||.+..|+ ++|.+|.|||... +.++++|+|+|++++|+.+.+.
T Consensus 138 ~~~h~~~~--~d~tl~~~~----~~~~yG~v~~d~--~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~------- 201 (254)
T TIGR02623 138 IAFHRKHG--KKATVTAVQ----PPGRFGALDLEG--EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGD------- 201 (254)
T ss_pred HHHHHHcC--CCEEEEEec----CCCcccEEEECC--CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhcccc-------
Confidence 88898877 888876542 356899998884 6899999998643 6799999999999998766441
Q ss_pred cccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhh
Q psy17795 307 FYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQL 368 (523)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~ 368 (523)
..++.+|+++.+++++++++|.++|||.|++|+++|.+++..+.+.
T Consensus 202 ----------------~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 202 ----------------ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred ----------------CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence 1234579999999999999999999999999999999988877643
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=242.17 Aligned_cols=210 Identities=20% Similarity=0.303 Sum_probs=173.0
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYL 174 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 174 (523)
|||||||| +|+||+|+|..+||||+|++|+|||+|+|++|.+. |+++|+|+++++.+++.+|+.+ +.|++.+.+.
T Consensus 1 kaiIlaaG--~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~ 75 (221)
T cd06422 1 KAMILAAG--LGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAA-GIRRIVVNTHHLADQIEAHLGD--SRFGLRITIS 75 (221)
T ss_pred CEEEEcCC--CCCccccccCCCCCceeeECCEEHHHHHHHHHHHC-CCCEEEEEccCCHHHHHHHHhc--ccCCceEEEe
Confidence 58999999 99999999999999999999999999999999996 9999999999999999999986 4578888777
Q ss_pred ecc-cccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHh--cCCcceEEEEE
Q psy17795 175 QEF-WDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSL--YSMAILVTVMA 243 (523)
Q Consensus 175 ~~~-~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~--~~~~~~~tv~~ 243 (523)
.+. +.+| ++++++ ++++.. ++ |++++ .+ .|+ +++.|.+ .+ +.+++..
T Consensus 76 ~~~~~~~g-----------------~~~~l~~~~~~~~~--~~-~lv~~~D~i~~~~~~~~~~~~~~~~~~--~~~~~~~ 133 (221)
T cd06422 76 DEPDELLE-----------------TGGGIKKALPLLGD--EP-FLVVNGDILWDGDLAPLLLLHAWRMDA--LLLLLPL 133 (221)
T ss_pred cCCCcccc-----------------cHHHHHHHHHhcCC--CC-EEEEeCCeeeCCCHHHHHHHHHhccCC--CceEEEE
Confidence 665 5667 999999 777752 56 88887 33 344 7777873 33 5666665
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccc
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNH 323 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 323 (523)
.+. +++..||.+..|++ ++|..+.|||.. .++++|+|+|+++++..+.+. +++
T Consensus 134 ~~~--~~~~~~g~v~~d~~-~~v~~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~------~~~--------------- 186 (221)
T cd06422 134 VRN--PGHNGVGDFSLDAD-GRLRRGGGGAVA---PFTFTGIQILSPELFAGIPPG------KFS--------------- 186 (221)
T ss_pred EEc--CCCCCcceEEECCC-CcEeecccCCCC---ceEEEEEEEEcHHHHhhCCcC------ccc---------------
Confidence 554 34678899999876 899999998753 789999999999988866431 222
Q ss_pred ccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhc
Q psy17795 324 IQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 324 ~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
+ +++++.++++++++++..+++|.|++++++|.+|
T Consensus 187 --~-~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 187 --L-NPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred --H-HHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 2 6899999998999999999999999999999865
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=233.43 Aligned_cols=233 Identities=18% Similarity=0.187 Sum_probs=192.8
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhh------
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV------ 164 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~------ 164 (523)
|+-+||||+||| .||||.|.|..+||-||||-+||+|+|+++.+.++ ||++|++|++..+..|++||....
T Consensus 2 ~~irKAViPaAG--lGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~a-GIe~i~iVTgr~K~~IeDhFD~s~ELE~~L 78 (291)
T COG1210 2 MKIRKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAA-GIEEILIVTGRGKRAIEDHFDTSYELENTL 78 (291)
T ss_pred CcccEEEEEccC--cccccccccccCchhhccccCchhHHHHHHHHHHc-CCCEEEEEecCCcchHHHhCcCcHHHHHHH
Confidence 455799999999 99999999999999999999999999999999996 999999999987778988886420
Q ss_pred ------------h--ccCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cchH-
Q psy17795 165 ------------Q--EYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IRSD- 224 (523)
Q Consensus 165 ------------~--~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~~D- 224 (523)
+ .-..++.|++|.+++| .+||++ ++++.+ ++ |.|+- ++.+
T Consensus 79 ~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~G-----------------LGhAVl~A~~~vg~--Ep-FaVlL~Ddl~~~~ 138 (291)
T COG1210 79 EKRGKRELLEEVRSIPPLVTISFVRQKEPLG-----------------LGHAVLCAKPFVGD--EP-FAVLLPDDLVDSE 138 (291)
T ss_pred HHhCHHHHHHHHHhcccCceEEEEecCCCCc-----------------chhHHHhhhhhcCC--Cc-eEEEeCCeeecCC
Confidence 1 1145789999999999 999999 888874 56 77654 2221
Q ss_pred H-----HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEE----EcCCCCcEEEEeecCC--CcccceeeeeEEEeeHHHH
Q psy17795 225 V-----VILMHSLYSMAILVTVMATEATRQQSVYYGCIV----RKQQTSEISHYVEKPS--TFVSTLVNCGVYLFSLDIF 293 (523)
Q Consensus 225 ~-----l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~----~d~~~~~V~~~~ekp~--~~~~~l~~~Giyif~~~il 293 (523)
. |.+.+.+.+ .. ++.+.+++.++.++||++. .+.+..+|..++|||+ +..|+++-.|-|+|+|++|
T Consensus 139 ~~~l~qmi~~ye~~g--~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IF 215 (291)
T COG1210 139 KPCLKQMIELYEETG--GS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIF 215 (291)
T ss_pred chHHHHHHHHHHHhC--Cc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHH
Confidence 1 666666665 43 6777888877889999886 3332248999999985 5689999999999999999
Q ss_pred HHHHHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 294 QNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 294 ~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
+.|++......+|+++ +|.+..|++...++++.+.|-.+|+|++..|++++..+.-
T Consensus 216 d~L~~~~~G~ggEiQL------------------TDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l 271 (291)
T COG1210 216 DILEETKPGAGGEIQL------------------TDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFAL 271 (291)
T ss_pred HHHhhCCCCCCCEeeH------------------HHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHh
Confidence 9998865555667766 7999999999889999999999999999999999987754
|
|
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=240.79 Aligned_cols=230 Identities=19% Similarity=0.276 Sum_probs=174.3
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhc-cCeeEE--
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQE-YKINIR-- 172 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~-~~~~i~-- 172 (523)
||||||| +|+||+|+|..+||||+|++|+|||+|+++.+.+. |+++|+|++++..+++++|+.+..+. .++++.
T Consensus 1 aiilaaG--~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 77 (253)
T cd02524 1 VVILAGG--LGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHY-GHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLG 77 (253)
T ss_pred CEEEecC--CccccCCccCCCCceEEEECCEEHHHHHHHHHHhC-CCceEEEECCCCHHHHHHHHHhhhhhcCceeEeec
Confidence 5899999 99999999999999999999999999999999986 99999999999999999999873210 112221
Q ss_pred -----EEeccc-ccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcce
Q psy17795 173 -----YLQEFW-DIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAIL 238 (523)
Q Consensus 173 -----~~~~~~-~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~ 238 (523)
+..+.. +++ +..-.. ...++|+++++ ++++.. +++ |++++ ++ .|+ ++++|...+ ++
T Consensus 78 ~~~~~~~~~~~~~~~-----~~~~~~-~~~~~t~~al~~a~~~~~~-~~~-~lv~~gD~i~~~dl~~ll~~h~~~~--~~ 147 (253)
T cd02524 78 TNRIELHNSDIEDWK-----VTLVDT-GLNTMTGGRLKRVRRYLGD-DET-FMLTYGDGVSDVNINALIEFHRSHG--KL 147 (253)
T ss_pred ccceeeecccccccc-----eeeccc-CcccccHHHHHHHHHhcCC-CCe-EEEEcCCEEECCCHHHHHHHHHHcC--CC
Confidence 121110 000 000000 01122899998 777752 256 88888 33 344 888888877 88
Q ss_pred EEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCC
Q psy17795 239 VTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKD 318 (523)
Q Consensus 239 ~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~ 318 (523)
+|+++.. .+..||.+..|++ ++|..+.|||... +.++++|+|+|++++++.+.+. .
T Consensus 148 ~tl~~~~----~~~~~g~v~~d~~-g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~-----~------------- 203 (253)
T cd02524 148 ATVTAVH----PPGRFGELDLDDD-GQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGD-----D------------- 203 (253)
T ss_pred EEEEEec----CCCcccEEEECCC-CCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccc-----c-------------
Confidence 8877653 3468999999987 8999999998754 5789999999999998776542 1
Q ss_pred CCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 319 TDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 319 ~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
.++.+++++.++++++++++.++|+|.+|+++++|..+...+.+
T Consensus 204 -----~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~ 247 (253)
T cd02524 204 -----TVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNS 247 (253)
T ss_pred -----chhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHc
Confidence 12336999999999999999999999999999999999877754
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=231.97 Aligned_cols=209 Identities=25% Similarity=0.482 Sum_probs=173.8
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+. ++++|+|++++..+.+.+++.+. ..++..+.++.
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~ 76 (217)
T cd04181 1 AVILAAG--KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARA-GIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVV 76 (217)
T ss_pred CEEecCC--ccccccccccCCCccccEECCeeHHHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEe
Confidence 5899999 99999999999999999999999999999999986 99999999999888999999763 33677787777
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEEeeC
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMATEAT 247 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~~~~ 247 (523)
+.++.| ++++++ ++++. .++ |++++ .+ .|+ +++.|.+.+ +++++++.+.+
T Consensus 77 ~~~~~g-----------------~~~al~~~~~~~~--~~~-~lv~~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 134 (217)
T cd04181 77 QEEPLG-----------------TAGAVRNAEDFLG--DDD-FLVVNGDVLTDLDLSELLRFHREKG--ADATIAVKEVE 134 (217)
T ss_pred CCCCCc-----------------cHHHHHHhhhhcC--CCC-EEEEECCeecCcCHHHHHHHHHhcC--CCEEEEEEEcC
Confidence 766667 999999 66663 466 88887 33 344 778888777 88888888764
Q ss_pred CCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccch
Q psy17795 248 RQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLE 327 (523)
Q Consensus 248 ~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 327 (523)
++..||.+..|++ ++|.++.|||......++++|+|+|++++++.+.+... ..+ ++.
T Consensus 135 --~~~~~~~v~~d~~-~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~--~~~------------------~~~ 191 (217)
T cd04181 135 --DPSRYGVVELDDD-GRVTRFVEKPTLPESNLANAGIYIFEPEILDYIPEILP--RGE------------------DEL 191 (217)
T ss_pred --CCCcceEEEEcCC-CcEEEEEECCCCCCCCEEEEEEEEECHHHHHhhhhcCC--ccc------------------ccH
Confidence 5678999999986 89999999997766789999999999999987765332 122 234
Q ss_pred hhhhhhhhcCCcEEEEEcchhHhhhc
Q psy17795 328 KEIIMPLAGSGKAYVYQTSKWWSQLK 353 (523)
Q Consensus 328 ~dil~~li~~g~v~~~~~~g~w~dIg 353 (523)
.++++.+++++++++++++|+|.|++
T Consensus 192 ~~~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 192 TDAIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHHHHhcCCEEEEEcCCEEecCC
Confidence 79999999888899999999999875
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-28 Score=231.71 Aligned_cols=214 Identities=22% Similarity=0.331 Sum_probs=175.1
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
||||||| +|+||+|+|...||+|+|++|+|||+|+++++.+. ++++|+|++++..+.+.+++... ..++..+.+..
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 76 (223)
T cd06915 1 AVILAGG--LGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQ-GISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVI 76 (223)
T ss_pred CEEecCC--cccccCcccCCCCccccEECCcchHHHHHHHHHHC-CCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEE
Confidence 5899999 99999999999999999999999999999999986 99999999999888999998752 22566666666
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEEeeC
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMATEAT 247 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~~~~ 247 (523)
+.+..| ++++++ ++++. .++ |++++ .+ .|+ +++.|++.+ +++++++.+..
T Consensus 77 ~~~~~G-----------------~~~~l~~a~~~~~--~~~-~lv~~~D~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~ 134 (223)
T cd06915 77 EPEPLG-----------------TGGAIKNALPKLP--EDQ-FLVLNGDTYFDVDLLALLAALRASG--ADATMALRRVP 134 (223)
T ss_pred CCCCCc-----------------chHHHHHHHhhcC--CCC-EEEEECCcccCCCHHHHHHHHHhCC--CcEEEEEEECC
Confidence 656677 999998 66764 356 88877 22 344 677777766 77888887763
Q ss_pred CCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccch
Q psy17795 248 RQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLE 327 (523)
Q Consensus 248 ~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 327 (523)
++..||.+..|++ ++|..+.|||....+.++++|+|+|++++|+.+... ..++.
T Consensus 135 --~~~~~~~v~~d~~-~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~-----------------------~~~~~ 188 (223)
T cd06915 135 --DASRYGNVTVDGD-GRVIAFVEKGPGAAPGLINGGVYLLRKEILAEIPAD-----------------------AFSLE 188 (223)
T ss_pred --CCCcceeEEECCC-CeEEEEEeCCCCCCCCcEEEEEEEECHHHHhhCCcc-----------------------CCChH
Confidence 3468898888876 899999999876667899999999999998765431 11244
Q ss_pred hhhhhhhhcCCcEEEEEcchhHhhhccchhhhhc
Q psy17795 328 KEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 328 ~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
+++++.+++.+++.+++.+++|.||++++||+.+
T Consensus 189 ~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 189 ADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred HHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 7899999988899999999999999999999876
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=228.67 Aligned_cols=211 Identities=24% Similarity=0.414 Sum_probs=171.1
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
||||||| +|+||+|+|...||+|+|++|+|||+|+|++|.+. ++++|+|++++..+.+++|+.+. ..|++++.++.
T Consensus 1 ~vIlaaG--~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~ 76 (220)
T cd06426 1 VVIMAGG--KGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQ-GFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVR 76 (220)
T ss_pred CEEecCC--CccccCcccCCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEECccCHHHHHHHHCCc-cccCccEEEEE
Confidence 5899999 99999999999999999999999999999999986 99999999999888999998863 34677777777
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEEeeC
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMATEAT 247 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~~~~ 247 (523)
++.++| |++++. .+.. .++ |+|++ .+ .++ +++.|+..+ +++++++.+..
T Consensus 77 ~~~~~g-----------------~~~~l~~~~~~~---~~~-~lv~~~D~i~~~~~~~l~~~~~~~~--~~~~~~~~~~~ 133 (220)
T cd06426 77 EDKPLG-----------------TAGALSLLPEKP---TDP-FLVMNGDILTNLNYEHLLDFHKENN--ADATVCVREYE 133 (220)
T ss_pred CCCCCc-----------------chHHHHHHHhhC---CCC-EEEEcCCEeeccCHHHHHHHHHhcC--CCEEEEEEEcC
Confidence 666777 899988 3333 356 88877 32 244 778888776 78888877643
Q ss_pred CCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccch
Q psy17795 248 RQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLE 327 (523)
Q Consensus 248 ~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 327 (523)
....||.+..|+ ++|.++.|||.. +.++++|+|+|++++++.+.+ ..+|+ +
T Consensus 134 --~~~~~g~~~~d~--~~v~~~~ek~~~--~~~~~~Giy~~~~~~~~~i~~-----~~~~~-----------------l- 184 (220)
T cd06426 134 --VQVPYGVVETEG--GRITSIEEKPTH--SFLVNAGIYVLEPEVLDLIPK-----NEFFD-----------------M- 184 (220)
T ss_pred --CCCcceEEEECC--CEEEEEEECCCC--CCeEEEEEEEEcHHHHhhcCC-----CCCcC-----------------H-
Confidence 345789888874 799999999754 578999999999999877632 12222 2
Q ss_pred hhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhcc
Q psy17795 328 KEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYAN 362 (523)
Q Consensus 328 ~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an 362 (523)
+++++.+++++. +.++.++++|.+++|+++|.+|+
T Consensus 185 ~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 185 PDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 689999988765 99999999999999999998875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=214.93 Aligned_cols=173 Identities=18% Similarity=0.275 Sum_probs=138.0
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccC-----
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYK----- 168 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~----- 168 (523)
++||||||| .|+||+|+|..+||||+||+|+|||+|+|+++.++ |+++|+|++++..+++++|+++. ..|+
T Consensus 1 ~~aiIla~G--~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~-Gi~~I~iv~~~~~~~i~~~l~~~-~~~~~~~~~ 76 (217)
T cd04197 1 LQAVVLADS--FNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALN-GVEEVFVFCCSHSDQIKEYIEKS-KWSKPKSSL 76 (217)
T ss_pred CeEEEEcCC--CcccccccccCCCceeeEECCEehHHHHHHHHHHC-CCCeEEEEeCCCHHHHHHHHhhc-cccccccCc
Confidence 469999999 99999999999999999999999999999999996 99999999999999999999874 3343
Q ss_pred eeEEEEecccccchhhhhcccccccccCCCchhHHH----HhhcccCCcceEEEEc--cc--hHH--HHHHHHhc-----
Q psy17795 169 INIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY----RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLY----- 233 (523)
Q Consensus 169 ~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~----~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~----- 233 (523)
..+.++.+++..+ ++++++ ++++ .++ |++++ .+ .|+ ++++|+++
T Consensus 77 ~~i~~~~~~~~~~-----------------~~~al~~~~~~~~~---~~~-flv~~gD~i~~~dl~~~l~~h~~~~~~~~ 135 (217)
T cd04197 77 MIVIIIMSEDCRS-----------------LGDALRDLDAKGLI---RGD-FILVSGDVVSNIDLKEILEEHKERRKKDK 135 (217)
T ss_pred ceEEEEeCCCcCc-----------------cchHHHHHhhcccc---CCC-EEEEeCCeeeccCHHHHHHHHHHhhcccc
Confidence 3466666656566 888886 2233 256 88887 44 355 88999874
Q ss_pred CCcceEEEEEEeeCCCCC----cceeEEEEcCCCCcEEEEeecCCCc--------------------ccceeeeeEEEee
Q psy17795 234 SMAILVTVMATEATRQQS----VYYGCIVRKQQTSEISHYVEKPSTF--------------------VSTLVNCGVYLFS 289 (523)
Q Consensus 234 ~~~~~~tv~~~~~~~~~~----~~~g~v~~d~~~~~V~~~~ekp~~~--------------------~~~l~~~Giyif~ 289 (523)
+ +++|+++.+++.+.. ..+|++.+|+++++|+.|.|||..+ .+++.++|+|+|+
T Consensus 136 ~--a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~ 213 (217)
T cd04197 136 N--AIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICS 213 (217)
T ss_pred C--ceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeC
Confidence 5 889998888754331 2367888887668999999998532 3789999999999
Q ss_pred HHHH
Q psy17795 290 LDIF 293 (523)
Q Consensus 290 ~~il 293 (523)
++++
T Consensus 214 ~~vl 217 (217)
T cd04197 214 PDVL 217 (217)
T ss_pred CCCC
Confidence 9864
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-25 Score=213.57 Aligned_cols=221 Identities=17% Similarity=0.266 Sum_probs=162.2
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
||||||| +|+||+|+|..+||||+|++|+|||+|+|+++.+. |+++|+|++++..+.+.+|+.+. .++.+.+..
T Consensus 1 aiIlAaG--~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~ 74 (229)
T cd02523 1 AIILAAG--RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEA-GIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNP 74 (229)
T ss_pred CEEEecc--CccccchhhCCCCceeeeECCEEHHHHHHHHHHHC-CCceEEEEeccCHHHHHHHHhcc---CCeEEEeCc
Confidence 5899999 99999999999999999999999999999999986 99999999999989999998752 333332222
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cchHH-HHHHHHhcCCcceEEEEEEeeCCCC
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRSDV-VILMHSLYSMAILVTVMATEATRQQ 250 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~D~-l~~~h~~~~~~~~~tv~~~~~~~~~ 250 (523)
+.++.| ++++++ ++++. ++ |++++ .+++. +++.|.+.+ ++.++++.+..+..
T Consensus 75 ~~~~~g-----------------~~~s~~~~~~~~~---~~-~lv~~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 131 (229)
T cd02523 75 DYAETN-----------------NIYSLYLARDFLD---ED-FLLLEGDVVFDPSILERLLSSP--ADNAILVDKKTKEW 131 (229)
T ss_pred chhhhC-----------------cHHHHHHHHHHcC---CC-EEEEeCCEecCHHHHHHHHcCC--CCCeEEEccCcccc
Confidence 223456 899998 66763 56 88877 44455 777787776 78888887643333
Q ss_pred CcceeEEEEcCCCCcEEEEeecCCCcc-cceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccchhh
Q psy17795 251 SVYYGCIVRKQQTSEISHYVEKPSTFV-STLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKE 329 (523)
Q Consensus 251 ~~~~g~v~~d~~~~~V~~~~ekp~~~~-~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~d 329 (523)
...++....| + +++..+.+||.... ..+.++|+|+|++++++.|.+....... ..+...+.++
T Consensus 132 ~~~~~~~~~~-~-~~v~~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~d 195 (229)
T cd02523 132 EDEYVKDLDD-A-GVLLGIISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIE--------------AGRVNLYYED 195 (229)
T ss_pred cccceeeecC-c-cceEeecccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHh--------------cccccccHHH
Confidence 4455543333 3 68999999986543 5689999999999998877653321100 0001122378
Q ss_pred hhhhhhcCCc--EEEEEcchhHhhhccchhhhhcc
Q psy17795 330 IIMPLAGSGK--AYVYQTSKWWSQLKSAGSAIYAN 362 (523)
Q Consensus 330 il~~li~~g~--v~~~~~~g~w~dIgt~~dyl~an 362 (523)
+++.++++.. ++.+.. ++|.+++++++|++|+
T Consensus 196 ~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 196 ALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred HHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 9999987444 445555 8999999999998763
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=203.96 Aligned_cols=212 Identities=16% Similarity=0.225 Sum_probs=153.8
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh---HHHHHHHHhhhhccCeeEE
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS---ADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~---~~i~~~l~~~~~~~~~~i~ 172 (523)
+|||||| +|+||+|+|..+||||+|++|+|||+|+|+.+.+. |++++++++++.. +.+.+++... ..++++.
T Consensus 1 ~iIlAaG--~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~ 75 (231)
T cd04183 1 IIIPMAG--LGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKI-FDSRFIFICRDEHNTKFHLDESLKLL--APNATVV 75 (231)
T ss_pred CEEECCc--CCccccccCCCCCceeeEECCEEHHHHHHHhhhcc-CCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEE
Confidence 3899999 99999999999999999999999999999999986 8999999886422 2233333321 1244553
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cch--HH--HHHHHHhcCCcceEEEEEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRS--DV--VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~--D~--l~~~h~~~~~~~~~tv~~~ 244 (523)
+ .+.++.| |+++++ ++++.. .++ |++++ .++ |+ +++.|.+.+ .+.++++.
T Consensus 76 ~-~~~~~~g-----------------~~~~l~~a~~~l~~-~~~-~lv~~~D~i~~~~~~~~~~~~~~~~--~~~~i~~~ 133 (231)
T cd04183 76 E-LDGETLG-----------------AACTVLLAADLIDN-DDP-LLIFNCDQIVESDLLAFLAAFRERD--LDGGVLTF 133 (231)
T ss_pred E-eCCCCCc-----------------HHHHHHHHHhhcCC-CCC-EEEEecceeeccCHHHHHHHhhccC--CceEEEEE
Confidence 3 3445667 999999 666642 356 88887 333 33 556666555 56666665
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHH-HH-HHHHHhhcc---cccccccccccccCCCC
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLD-IF-QNIAAVFQS---KQDEFYNGNYMVNGKDT 319 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~-il-~~l~~~~~~---~~~e~~~~~~~~~~~~~ 319 (523)
.. ....||.+..|++ ++|..+.||+. .+.++++|+|+|+++ +| +.+.+.... ..+++++
T Consensus 134 ~~---~~~~~~~v~~d~~-~~v~~~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------- 197 (231)
T cd04183 134 FS---SHPRWSYVKLDEN-GRVIETAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYI---------- 197 (231)
T ss_pred eC---CCCCeEEEEECCC-CCEEEeEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEE----------
Confidence 54 2347999989887 89999998853 457899999999987 44 445442211 1233332
Q ss_pred CcccccchhhhhhhhhcCCc-EEEEEc-chhHhhhccchhh
Q psy17795 320 DFNHIQLEKEIIMPLAGSGK-AYVYQT-SKWWSQLKSAGSA 358 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g~-v~~~~~-~g~w~dIgt~~dy 358 (523)
.++++.++++|. +.++.. .++|.|++++++|
T Consensus 198 --------~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 198 --------SPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred --------hHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 689999998875 999998 6999999999886
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-24 Score=202.71 Aligned_cols=184 Identities=22% Similarity=0.384 Sum_probs=138.9
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCee----
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKIN---- 170 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~---- 170 (523)
||||||| +|+||+|+|...||+|+|++|+ |||+|+++++.+. |+++++|++++..+++.+|+.+. ..|+++
T Consensus 1 avILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~ 76 (200)
T cd02508 1 AIILAGG--EGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNS-GIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNG 76 (200)
T ss_pred CEEeCCC--CCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHC-CCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCC
Confidence 5899999 9999999999999999999998 9999999999986 99999999999999999999763 345443
Q ss_pred -EEEEecccccchhhhhcccccccccCCCchhHHH--Hhhccc-CCcceEEEEc--cc--hHH--HHHHHHhcCCcceEE
Q psy17795 171 -IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW-VQEAVYFTLE--IR--SDV--VILMHSLYSMAILVT 240 (523)
Q Consensus 171 -i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~-~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~t 240 (523)
+.++...+.. +++|..| ||+|++ ++++.. .+++ |+|++ .+ .|+ ++++|++.+ +++|
T Consensus 77 ~~~~~~~~~~~---------~~~~~~G--ta~al~~a~~~i~~~~~~~-~lv~~gD~v~~~~~~~~l~~~~~~~--~~~t 142 (200)
T cd02508 77 GLFILPPQQRK---------GGDWYRG--TADAIYQNLDYIERSDPEY-VLILSGDHIYNMDYREMLDFHIESG--ADIT 142 (200)
T ss_pred CEEEeCcccCC---------CCCcccC--cHHHHHHHHHHHHhCCCCE-EEEecCCEEEecCHHHHHHHHHHcC--CCEE
Confidence 3343311100 1122333 999999 777752 2366 88887 33 344 888888777 7777
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHH-HHHhhcccccccccccccccCCCC
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQN-IAAVFQSKQDEFYNGNYMVNGKDT 319 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~-l~~~~~~~~~e~~~~~~~~~~~~~ 319 (523)
+++. +++|+|+|++++|.. +... ....++
T Consensus 143 ~~~~------------------------------------~~~g~yi~~~~~~~~~l~~~-~~~~~~------------- 172 (200)
T cd02508 143 VVYK------------------------------------ASMGIYIFSKDLLIELLEED-AADGSH------------- 172 (200)
T ss_pred EEEh------------------------------------hcCEEEEEEHHHHHHHHHHH-hccCcc-------------
Confidence 6654 778999999999854 4442 212222
Q ss_pred CcccccchhhhhhhhhcCCcEEEEEcchhHhhh
Q psy17795 320 DFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQL 352 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dI 352 (523)
++.+|+++.++++++++++..++||.|+
T Consensus 173 -----~~~~d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 173 -----DFGKDIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred -----hhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence 3448999999999889999999999875
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-22 Score=198.68 Aligned_cols=233 Identities=16% Similarity=0.162 Sum_probs=156.9
Q ss_pred eeEEEEecCCCCCCcCCCCCC-CCCcccceeCC-cchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCee
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSL-DSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~-~~pK~ll~i~g-~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~ 170 (523)
|++|||||| .||||+|+|. .+||||+|++| +|||+|+++++....++++|+|++++ +.+.+++++.+ ....
T Consensus 1 m~~vILAgG--~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~ 74 (274)
T cd02509 1 IYPVILAGG--SGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPE 74 (274)
T ss_pred CEEEEEccc--ccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCC
Confidence 579999999 9999999996 79999999999 99999999999986459999999987 44566677754 1234
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc--cCCcceEEEEc---cch---HH--HHHHHHh---cCC
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH--WVQEAVYFTLE---IRS---DV--VILMHSL---YSM 235 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~--~~~d~~~Lvl~---i~~---D~--l~~~h~~---~~~ 235 (523)
+.++.+++++| |++++. ..++. +.++. ++|++ ++. ++ +++.+.+ .+
T Consensus 75 ~~ii~ep~~~g-----------------Ta~ai~~a~~~~~~~~~~~~-vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~- 135 (274)
T cd02509 75 ENIILEPEGRN-----------------TAPAIALAALYLAKRDPDAV-LLVLPSDHLIEDVEAFLKAVKKAVEAAEEG- 135 (274)
T ss_pred ceEEECCCCCC-----------------cHHHHHHHHHHHHhcCCCCe-EEEecchhcccCHHHHHHHHHHHHHHHHcC-
Confidence 56777777777 999998 55554 22345 78877 332 33 3332222 44
Q ss_pred cceEEEEEEeeCCCCCcceeEEEEcCCC-C---cEEEEeecCCCc--------ccceeeeeEEEeeHHH-HHHHHHhhcc
Q psy17795 236 AILVTVMATEATRQQSVYYGCIVRKQQT-S---EISHYVEKPSTF--------VSTLVNCGVYLFSLDI-FQNIAAVFQS 302 (523)
Q Consensus 236 ~~~~tv~~~~~~~~~~~~~g~v~~d~~~-~---~V~~~~ekp~~~--------~~~l~~~Giyif~~~i-l~~l~~~~~~ 302 (523)
+.+|+.+.+. .....||++..+++. + +|.+|.|||... ...++|+|+|+|+++. ++.|++..++
T Consensus 136 -~~vt~gi~p~--~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~ 212 (274)
T cd02509 136 -YLVTFGIKPT--RPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPD 212 (274)
T ss_pred -CEEEEEeeec--CCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHH
Confidence 6777777665 234789999998641 2 899999999732 2358999999999874 4555544332
Q ss_pred ccccccc--ccc-c------ccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchh
Q psy17795 303 KQDEFYN--GNY-M------VNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGS 357 (523)
Q Consensus 303 ~~~e~~~--~~~-~------~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~d 357 (523)
....+.. ... . ....|...+..||...++ .+..++.+++.+..|-|+|++.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavm---e~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 213 IYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVM---EKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhh---eeCCCcEEEecCCCcCcccCccc
Confidence 2000000 000 0 001123334455544443 34455888899999999999865
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=189.48 Aligned_cols=209 Identities=20% Similarity=0.301 Sum_probs=155.3
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
||||||| .|+||++ ..||+|+|++|+|||+|+++++.+. ++++++|++++..+.+.+++.+ ++ ++++.
T Consensus 1 aiIlaaG--~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~-~i~~i~iv~~~~~~~i~~~~~~----~~--~~~~~ 68 (229)
T cd02540 1 AVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVLDAARAL-GPDRIVVVVGHGAEQVKKALAN----PN--VEFVL 68 (229)
T ss_pred CEEEeCC--CCccCCC---CCChhcceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhCC----CC--cEEEE
Confidence 5899999 9999997 7899999999999999999999986 9999999999888888888765 33 44555
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c--c--hHH--HHHHHHhcCCcceEEEEEEe
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I--R--SDV--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i--~--~D~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
+.+..| ++++++ .+++....+. |++++ . + .++ +++.|.+.+ +++++.+.+
T Consensus 69 ~~~~~g-----------------~~~ai~~a~~~~~~~~~~-vli~~~D~p~~~~~~i~~l~~~~~~~~--~~~~~~~~~ 128 (229)
T cd02540 69 QEEQLG-----------------TGHAVKQALPALKDFEGD-VLVLYGDVPLITPETLQRLLEAHREAG--ADVTVLTAE 128 (229)
T ss_pred CCCCCC-----------------CHHHHHHHHHhhccCCCe-EEEEeCCccccCHHHHHHHHHHHHhcC--CcEEEEEEE
Confidence 555566 999999 6666422356 77776 2 2 233 677777665 677777766
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHH-HHHHHhhccc-ccccccccccccCCCC
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIF-QNIAAVFQSK-QDEFYNGNYMVNGKDT 319 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il-~~l~~~~~~~-~~e~~~~~~~~~~~~~ 319 (523)
.. ++..||.+..|++ ++|.++.|||... ...++++|+|+|+++.+ +.+....... .+++++
T Consensus 129 ~~--~p~~~~~~~~~~~-~~v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~---------- 195 (229)
T cd02540 129 LE--DPTGYGRIIRDGN-GKVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYL---------- 195 (229)
T ss_pred cC--CCCCccEEEEcCC-CCEEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEH----------
Confidence 53 5678998888776 8999999987422 23689999999998754 5565432211 233333
Q ss_pred CcccccchhhhhhhhhcCCc-EEEEEcchhH--hhhccchh
Q psy17795 320 DFNHIQLEKEIIMPLAGSGK-AYVYQTSKWW--SQLKSAGS 357 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g~-v~~~~~~g~w--~dIgt~~d 357 (523)
+++++.+++.|. ++++..+||| +.++++.+
T Consensus 196 --------~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 228 (229)
T cd02540 196 --------TDIIALAVADGLKVAAVLADDEEEVLGVNDRVQ 228 (229)
T ss_pred --------HHHHHHHHHCCCEEEEEEcCCcceEecCCChHh
Confidence 799999998875 9999998776 45666654
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=187.61 Aligned_cols=174 Identities=19% Similarity=0.284 Sum_probs=129.6
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh---cc--C
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ---EY--K 168 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~---~~--~ 168 (523)
|+||||||| .|+||.|+|...||+|+|++|+|||+|+++++.+. |+++|+|++++..+.+.+++.+... .. +
T Consensus 1 ~~avIlagg--~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (216)
T cd02507 1 FQAVVLADG--FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKA-GVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMI 77 (216)
T ss_pred CeEEEEeCC--CccccCccccCCCcccceECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHhcccccccCCce
Confidence 579999999 99999999999999999999999999999999985 9999999999988899999986321 01 2
Q ss_pred eeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHH--HHhcCCcce
Q psy17795 169 INIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILM--HSLYSMAIL 238 (523)
Q Consensus 169 ~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~--h~~~~~~~~ 238 (523)
+.+.+..+.++.| ||++++ ++++. ++ |++++ .+ .|+ +++. +...+ ++
T Consensus 78 v~~~~~~~~~~~G-----------------ta~~l~~~~~~i~---~d-flv~~gD~i~~~~l~~~l~~~r~~~~~--~~ 134 (216)
T cd02507 78 VDVITSDLCESAG-----------------DALRLRDIRGLIR---SD-FLLLSCDLVSNIPLSELLEERRKKDKN--AI 134 (216)
T ss_pred EEEEEccCCCCCc-----------------cHHHHHHHhhcCC---CC-EEEEeCCEeecCCHHHHHHHHHhhCcc--cc
Confidence 3333444445666 999998 66664 46 88887 44 344 5543 33334 55
Q ss_pred EEEEEEeeCCCC-------CcceeEEEEcCCC--CcEEEEeecCCC------------------cccceeeeeEEEeeHH
Q psy17795 239 VTVMATEATRQQ-------SVYYGCIVRKQQT--SEISHYVEKPST------------------FVSTLVNCGVYLFSLD 291 (523)
Q Consensus 239 ~tv~~~~~~~~~-------~~~~g~v~~d~~~--~~V~~~~ekp~~------------------~~~~l~~~Giyif~~~ 291 (523)
+++++....... ...++.+..|+++ .++.++.|+|.. ..+++.++|+|+|+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~ 214 (216)
T cd02507 135 ATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPD 214 (216)
T ss_pred eEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCc
Confidence 565555433222 4568899999876 567777776542 3678999999999998
Q ss_pred HH
Q psy17795 292 IF 293 (523)
Q Consensus 292 il 293 (523)
++
T Consensus 215 Vl 216 (216)
T cd02507 215 VL 216 (216)
T ss_pred CC
Confidence 64
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=185.92 Aligned_cols=174 Identities=18% Similarity=0.284 Sum_probs=132.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhh--hccCee
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMV--QEYKIN 170 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~--~~~~~~ 170 (523)
|+||||||| .|+||+|+|...||+|+|++|+|||+|+++++.+. |+++|+|++++ ..+.+++++.+.. ...+..
T Consensus 1 ~~aVILAgG--~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~ 77 (214)
T cd04198 1 FQAVILAGG--GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA-GFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLD 77 (214)
T ss_pred CEEEEEeCC--CCCcCCccccCCCcccCEECCeeHHHHHHHHHHHC-CCCeEEEEECHHHHHHHHHHHHhcccccCccee
Confidence 579999999 99999999999999999999999999999999995 99999999987 4456888886521 111233
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cchH--H--HHHHHHhcCCcceEEEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRSD--V--VILMHSLYSMAILVTVM 242 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~D--~--l~~~h~~~~~~~~~tv~ 242 (523)
+.+..+.+.+| |+++++ .+.+. ++ |+|++ .+++ + +++.|++.+ +.+|++
T Consensus 78 ~~~~~~~~~~g-----------------t~~al~~~~~~i~---~d-~lv~~~D~i~~~~l~~~l~~h~~~~--~~~t~~ 134 (214)
T cd04198 78 EVTIVLDEDMG-----------------TADSLRHIRKKIK---KD-FLVLSCDLITDLPLIELVDLHRSHD--ASLTVL 134 (214)
T ss_pred EEEecCCCCcC-----------------hHHHHHHHHhhcC---CC-EEEEeCccccccCHHHHHHHHhccC--CcEEEE
Confidence 44444556667 999999 55553 46 88887 4433 3 888898877 889999
Q ss_pred EEeeCCC-----------CCcceeEEEEcCCCCcEEEEeecC-----------------C-CcccceeeeeEEEeeHHHH
Q psy17795 243 ATEATRQ-----------QSVYYGCIVRKQQTSEISHYVEKP-----------------S-TFVSTLVNCGVYLFSLDIF 293 (523)
Q Consensus 243 ~~~~~~~-----------~~~~~g~v~~d~~~~~V~~~~ekp-----------------~-~~~~~l~~~Giyif~~~il 293 (523)
+.+.... .+..+..+..|+++++++.+.... . ...+++.|+|+|+|+++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 135 LYPPPVSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred EeccCCcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 8875421 123467888888888999886521 1 2468899999999998763
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=181.87 Aligned_cols=219 Identities=10% Similarity=0.029 Sum_probs=148.8
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|++.+||||+| .|+||. +|+|+|++|+|||+|+++.+.+. ++++|+|++++ +.+.+++.. ++..+
T Consensus 1 m~~~~iIlA~g--~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~--~~i~~~~~~----~~~~v 65 (245)
T PRK05450 1 MKFLIIIPARY--ASTRLP------GKPLADIGGKPMIVRVYERASKA-GADRVVVATDD--ERIADAVEA----FGGEV 65 (245)
T ss_pred CceEEEEecCC--CCCCCC------CCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCc--HHHHHHHHH----cCCEE
Confidence 45668999999 999994 69999999999999999999987 99999998864 567777754 45556
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH-Hhhcc-cCCcceEEEEc--c-c--hH-H--HHHHHHhcCCcceEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLH-WVQEAVYFTLE--I-R--SD-V--VILMHSLYSMAILVTV 241 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~-~~~d~~~Lvl~--i-~--~D-~--l~~~h~~~~~~~~~tv 241 (523)
.+..+....| +++... ...+. ...+. +|+++ . + .+ + +++.|+..+ .+.++
T Consensus 66 ~~~~~~~~~g-----------------t~~~~~~~~~~~~~~~~~-vlv~~~D~Pli~~~~l~~li~~~~~~~--~~~~~ 125 (245)
T PRK05450 66 VMTSPDHPSG-----------------TDRIAEAAAKLGLADDDI-VVNVQGDEPLIPPEIIDQVAEPLANPE--ADMAT 125 (245)
T ss_pred EECCCcCCCc-----------------hHHHHHHHHhcCCCCCCE-EEEecCCCCCCCHHHHHHHHHHHhcCC--CCeEe
Confidence 5544544445 555444 33332 12345 77766 2 2 12 2 666666554 55566
Q ss_pred EEEeeCC----CCCcceeEEEEcCCCCcEEEEeecCCC----------cccceeeeeEEEeeHHHHHHHHHhhccccccc
Q psy17795 242 MATEATR----QQSVYYGCIVRKQQTSEISHYVEKPST----------FVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEF 307 (523)
Q Consensus 242 ~~~~~~~----~~~~~~g~v~~d~~~~~V~~~~ekp~~----------~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~ 307 (523)
++.+... .++..++++ +|++ |+|++|.|||.. ..+++.++|+|+|++++++.+.+.... ++
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~-~d~~-g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~---~~ 200 (245)
T PRK05450 126 LAVPIHDAEEAFNPNVVKVV-LDAD-GRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPS---PL 200 (245)
T ss_pred eeeecCCHHHhcCcCCCEEE-eCCC-CcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCC---cc
Confidence 5555421 345567755 7776 899999999832 235899999999999999887663211 11
Q ss_pred ccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcch-hHhhhccchhhhhccHHH
Q psy17795 308 YNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSK-WWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g-~w~dIgt~~dyl~an~~~ 365 (523)
+. . +. .++++.+.+...++++..++ +|.++++++||.+++..+
T Consensus 201 ~~-----------~---~~-~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 201 EK-----------I---ES-LEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred cc-----------c---hh-HHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 11 0 11 12334333333599999986 999999999999998654
|
|
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=199.41 Aligned_cols=237 Identities=16% Similarity=0.165 Sum_probs=152.5
Q ss_pred eeEEEEecCCCCCCcCCCCCCC-CCcccceeCC-cchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCee
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLD-SPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~-~pK~ll~i~g-~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~ 170 (523)
|.+|||||| .||||+|||.. +||||+++.| +|||+|+++.|... ++++++||++. +...+.+.+.+ ++.+
T Consensus 1 ~~~vILAgG--~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~-~~~~iviv~~~~~~~~~~~~l~~----~~~~ 73 (468)
T TIGR01479 1 IIPVILAGG--SGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGL-PCSSPLVICNEEHRFIVAEQLRE----IGKL 73 (468)
T ss_pred CEEEEecCc--ccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcC-CCcCcEEecCHHHHHHHHHHHHH----cCCC
Confidence 469999999 99999999996 9999999977 89999999999986 89999999875 33345555554 3333
Q ss_pred -EEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-c-CCcceEEEEc---cchH---H--HHHHH---HhcC
Q psy17795 171 -IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-W-VQEAVYFTLE---IRSD---V--VILMH---SLYS 234 (523)
Q Consensus 171 -i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~-~~d~~~Lvl~---i~~D---~--l~~~h---~~~~ 234 (523)
..++.|+.++| ||+++. ..++. . .++++++|++ ++.| + +++.+ .+.+
T Consensus 74 ~~~~i~Ep~~~g-----------------Ta~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~ 136 (468)
T TIGR01479 74 ASNIILEPVGRN-----------------TAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEG 136 (468)
T ss_pred cceEEecccccC-----------------chHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcC
Confidence 34777878888 999888 44442 1 2233277887 3333 3 44433 2334
Q ss_pred CcceEEEEEEeeCCCCCcceeEEEEcC-----CCCcEEEEeecCCCc--------ccceeeeeEEEeeHH-HHHHHHHhh
Q psy17795 235 MAILVTVMATEATRQQSVYYGCIVRKQ-----QTSEISHYVEKPSTF--------VSTLVNCGVYLFSLD-IFQNIAAVF 300 (523)
Q Consensus 235 ~~~~~tv~~~~~~~~~~~~~g~v~~d~-----~~~~V~~~~ekp~~~--------~~~l~~~Giyif~~~-il~~l~~~~ 300 (523)
+.+|+...+. .....||++..|+ +.++|.+|.|||... ...++|+|+|+|+++ +++.|.+..
T Consensus 137 --~lvtlgi~p~--~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~ 212 (468)
T TIGR01479 137 --KLVTFGIVPT--HPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHA 212 (468)
T ss_pred --CEEEEEecCC--CCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHC
Confidence 5566555543 3457899999873 125899999999631 246899999999966 344554433
Q ss_pred ccccccccc--ccc-cc-------cCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhc
Q psy17795 301 QSKQDEFYN--GNY-MV-------NGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 301 ~~~~~e~~~--~~~-~~-------~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
++....+.. ... +. ..-|..-+.+||...+ |.+..++++++.+..|.|+|+++++++.
T Consensus 213 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyav---mEk~~~v~vv~~~~~W~DvGsw~~l~~~ 280 (468)
T TIGR01479 213 PDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAV---MEKTADAVVVPMDAGWSDVGSWSALWEI 280 (468)
T ss_pred HHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeee---eEcCCcEEEEeCCCCccccCCHHHHHHh
Confidence 221000000 000 00 0001122233332222 2333458999999999999999998764
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=179.76 Aligned_cols=214 Identities=14% Similarity=0.104 Sum_probs=147.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
+.+||||+| .|+||+ ||+|++++|+|||+|+++.+.++.++++|+|++++ +.+.+++.+ +++++.+
T Consensus 2 ~~~iIlA~g--~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~~ 67 (239)
T cd02517 2 VIVVIPARY--ASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVVM 67 (239)
T ss_pred EEEEEecCC--CCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEEE
Confidence 458999999 999995 59999999999999999999985589999998874 577777764 4555544
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH-HhhcccCCcceEEEEc----cc-h-HH--HHHHHHhc-CCcceEEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLHWVQEAVYFTLE----IR-S-DV--VILMHSLY-SMAILVTVMA 243 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~~~~d~~~Lvl~----i~-~-D~--l~~~h~~~-~~~~~~tv~~ 243 (523)
..+.++.| +++... .+.+....+. ||+++ ++ . ++ +++.|... + .++++++
T Consensus 68 ~~~~~~~g-----------------t~~~~~~~~~~~~~~d~-vlv~~gD~Pli~~~~l~~l~~~~~~~~~--~~~~~~~ 127 (239)
T cd02517 68 TSPDHPSG-----------------TDRIAEVAEKLDADDDI-VVNVQGDEPLIPPEMIDQVVAALKDDPG--VDMATLA 127 (239)
T ss_pred cCcccCch-----------------hHHHHHHHHhcCCCCCE-EEEecCCCCCCCHHHHHHHHHHHHhCCC--CCEEEEE
Confidence 44444556 776444 4445422356 88877 22 1 22 66666654 5 6778877
Q ss_pred EeeCCCCC-cceeE--EEEcCCCCcEEEEeecCCC-------cccceeeeeEEEeeHHHHHHHHHhhccccccccccccc
Q psy17795 244 TEATRQQS-VYYGC--IVRKQQTSEISHYVEKPST-------FVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYM 313 (523)
Q Consensus 244 ~~~~~~~~-~~~g~--v~~d~~~~~V~~~~ekp~~-------~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~ 313 (523)
.+.+.+.. ..+|. +..|++ ++|+.|.++|.. +.+.++++|+|+|++++++.+.... ..++++
T Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~---~~~~~~---- 199 (239)
T cd02517 128 TPISDEEELFNPNVVKVVLDKD-GYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALP---PSPLEQ---- 199 (239)
T ss_pred EEcCCHHHccCCCCCEEEECCC-CCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCC---Cchhhh----
Confidence 77632110 03343 556766 899999876431 2367999999999999998875521 122222
Q ss_pred ccCCCCCcccccchhhhhh--hhhcCCc-EEEEEcchhHhhhccchhhhhccH
Q psy17795 314 VNGKDTDFNHIQLEKEIIM--PLAGSGK-AYVYQTSKWWSQLKSAGSAIYANR 363 (523)
Q Consensus 314 ~~~~~~~~~~~~~~~dil~--~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~ 363 (523)
++.++ .++++|. ++++..+++|.+++++++|.++++
T Consensus 200 --------------~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 200 --------------IESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred --------------hhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 23332 3456665 889888899999999999988764
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-20 Score=173.79 Aligned_cols=224 Identities=14% Similarity=0.218 Sum_probs=147.5
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEc-cCChHHHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILG-YYPSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~-~~~~~~i~~~l~~~~~~~~~ 169 (523)
|+-|+||||||| .|+||+| .+||+|+.++|+|+|+|++++|.+. |++++++|+ ++..+.+++++.+ ++.
T Consensus 1 ~~~~kavILAAG--~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~-gi~e~vvV~~g~~~~lve~~l~~----~~~ 70 (239)
T COG1213 1 MHPMKAVILAAG--FGSRLGP---DIPKALVEVGGREIIYRTIENLAKA-GITEFVVVTNGYRADLVEEFLKK----YPF 70 (239)
T ss_pred CCceeEEEEecc--cccccCC---CCCchhhhcCCeEeHHHHHHHHHHc-CCceEEEEeccchHHHHHHHHhc----CCc
Confidence 456899999999 9999999 9999999999999999999999996 999999999 8898889888876 344
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cchHH-HHHHHHhcCCcceEEEEEE
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRSDV-VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~D~-l~~~h~~~~~~~~~tv~~~ 244 (523)
..+++.++.+ +-|||+.+|+ ++++. +. |++++ ++.+- +++...+.. +. ++.+.
T Consensus 71 ~~~iv~N~~y---------------~ktN~~~Sl~~akd~~~---~~-fii~~sD~vye~~~~e~l~~a~--~~-~li~d 128 (239)
T COG1213 71 NAKIVINSDY---------------EKTNTGYSLLLAKDYMD---GR-FILVMSDHVYEPSILERLLEAP--GE-GLIVD 128 (239)
T ss_pred ceEEEeCCCc---------------ccCCceeEEeeehhhhc---Cc-EEEEeCCEeecHHHHHHHHhCc--CC-cEEEe
Confidence 5555554322 1134788998 88887 34 77776 33222 444444432 22 33333
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccc
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 324 (523)
..+......--..+.+++ |++..+.++-. ..+..++|++.|+.++|..+.+...+. .++
T Consensus 129 ~~~~~~~~~ea~kv~~e~-G~i~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~-~~~----------------- 187 (239)
T COG1213 129 RRPRYVGVEEATKVKDEG-GRIVEIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVER-SEY----------------- 187 (239)
T ss_pred ccccccccCceeEEEecC-CEEehhcCCcc--cccceeeeeEEechHHHHHHHHHHhhh-hhH-----------------
Confidence 322111111123344555 99999987643 456689999999999887776543322 111
Q ss_pred cchhhhhhhhh-cCCcEEEEEcchhHhhhccchhhhhccHHHHhh
Q psy17795 325 QLEKEIIMPLA-GSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQL 368 (523)
Q Consensus 325 ~~~~dil~~li-~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~ 368 (523)
++ .++.+... ....+.......+|++++||+|+.++.+.+...
T Consensus 188 ~~-~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~ 231 (239)
T COG1213 188 DY-REVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPN 231 (239)
T ss_pred HH-HHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHH
Confidence 11 23332211 111122111246899999999999998876643
|
|
| >KOG3465|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-20 Score=141.97 Aligned_cols=60 Identities=35% Similarity=0.599 Sum_probs=54.3
Q ss_pred cccccceeeec-----cCCCccEEEEEEEecCCeEEEEEecCceEEEEEcccchhhhhHHHhhhc
Q psy17795 3 YDHKNGYLKLK-----MTDDNARYSMKYDHKNGYLKLKMTDDNVCLIYKTEMSQDLKKIDNAKKH 62 (523)
Q Consensus 3 ~~~~~~~~~~~-----~~p~~~r~~~k~~~~~~~~~~k~t~~~~~~~~~~~~~~~~~~~e~~~~~ 62 (523)
|-+||-|..++ .+|.+|||+|||||++|.++||+|||..|+|||||++||+||||+++..
T Consensus 4 ~qtwdEF~~ase~L~~A~P~~~RlvmKYrh~~g~l~lkvtd~~~CLkYkTdqaqdlkKleki~s~ 68 (86)
T KOG3465|consen 4 LQTWDEFFTASESLYLANPEKTRLVMKYRHSKGSLVLKVTDNVECLKYKTDQAQDLKKLEKIASK 68 (86)
T ss_pred eeeHHHHHHHHHHHHhcCccceEEEEEEecCCCcEEEEeecceeeeeechhhhHHHHHHHHHHHH
Confidence 45788887664 5799999999999999999999999999999999999999999998654
|
|
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-18 Score=164.41 Aligned_cols=214 Identities=15% Similarity=0.156 Sum_probs=142.2
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~ 172 (523)
++.+||||+| .++||. +|+|++++|+|||+|+++.+.++.++++|+|++++ +.+.+++.+ ++.++.
T Consensus 2 ~~~aiIlA~g--~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~ 67 (238)
T PRK13368 2 KVVVVIPARY--GSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVV 67 (238)
T ss_pred cEEEEEecCC--CCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEE
Confidence 4569999999 899994 59999999999999999999985589999999865 567777765 455564
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH-HhhcccCCcceEEEEc----cch--HH--HHHHHHhcCCcceEEEEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLHWVQEAVYFTLE----IRS--DV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~~~~d~~~Lvl~----i~~--D~--l~~~h~~~~~~~~~tv~~ 243 (523)
+..+....| ++.... .+.+. .+. |++++ ++. ++ +++.+...+ ...+++++
T Consensus 68 ~~~~~~~~g-----------------~~~~~~a~~~~~--~d~-~lv~~~D~P~i~~~~i~~l~~~~~~~~-~~~~~~~~ 126 (238)
T PRK13368 68 MTSDDHLSG-----------------TDRLAEVMLKIE--ADI-YINVQGDEPMIRPRDIDTLIQPMLDDP-SINVATLC 126 (238)
T ss_pred ecCccCCCc-----------------cHHHHHHHHhCC--CCE-EEEEcCCcCcCCHHHHHHHHHHHHHCC-CccceeEE
Confidence 444444444 554332 44443 355 78876 222 23 666665443 13555555
Q ss_pred EeeCC--C--CCcceeEEEEcCCCCcEEEEeecCCC------cccceeeeeEEEeeHHHHHHHHHhhccccccccccccc
Q psy17795 244 TEATR--Q--QSVYYGCIVRKQQTSEISHYVEKPST------FVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYM 313 (523)
Q Consensus 244 ~~~~~--~--~~~~~g~v~~d~~~~~V~~~~ekp~~------~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~ 313 (523)
.+.+. . ++..++. ..+++ |++..+.|+|.. ....+.++|+|+|++++|..+......
T Consensus 127 ~~~~~~~~~~~p~~~~~-~~~~~-g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~----------- 193 (238)
T PRK13368 127 APISTEEEFESPNVVKV-VVDKN-GDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPET----------- 193 (238)
T ss_pred EEcCCHHHhcCcCCCEE-EECCC-CCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCC-----------
Confidence 54431 1 2444554 44555 899999875421 124588999999999999876442110
Q ss_pred ccCCCCCcccccchh-hhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccH
Q psy17795 314 VNGKDTDFNHIQLEK-EIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANR 363 (523)
Q Consensus 314 ~~~~~~~~~~~~~~~-dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~ 363 (523)
+..+++. +++ .++..| .++++..+++|.||++++||..++.
T Consensus 194 --------~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 194 --------PLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRA 236 (238)
T ss_pred --------hhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHH
Confidence 0111222 566 444445 4999998899999999999998865
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=165.72 Aligned_cols=167 Identities=22% Similarity=0.299 Sum_probs=127.7
Q ss_pred cccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCCceEecCcEECCCCEECCCCE
Q psy17795 323 HIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAI 402 (523)
Q Consensus 323 ~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~ 402 (523)
..+| +|.++.|++.+ ++..++||.|+ ++|+++++.+|.......+.. ........+++.++.|++++.
T Consensus 27 ~~~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~-----~~~~~~~~~vg~~~~I~~~a~ 94 (231)
T TIGR03532 27 QVDF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRR-----NSAIPLLDLKNINARIEPGAI 94 (231)
T ss_pred cccc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeeccc-----ccccccccccccccEECCCCE
Confidence 4566 79999999876 77889999999 999999999997643111100 000111124567777777777
Q ss_pred ECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCC
Q psy17795 403 VGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSN 480 (523)
Q Consensus 403 I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~ 480 (523)
|.++++||++|.|++++.|+ +++||++|.|++++.|. +++||++|.||.++.|.+.. .. .....+.|+++++||++
T Consensus 95 I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~-~~-~~~~~v~IGd~v~IG~g 172 (231)
T TIGR03532 95 IRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVI-EP-PSAKPVVIEDNVLIGAN 172 (231)
T ss_pred EeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEcccc-cc-ccCCCeEECCCcEECCC
Confidence 77778888888888888774 48889999999999996 89999999999999997621 11 12345889999999999
Q ss_pred CeecCCcEEeCCCCEECCCcEEeC
Q psy17795 481 GKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 481 ~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
++|.++ ++||++++|+++++|..
T Consensus 173 svI~~g-~~Ig~~~~IgagsvV~~ 195 (231)
T TIGR03532 173 AVILEG-VRVGKGAVVAAGAIVTE 195 (231)
T ss_pred CEEcCC-CEECCCCEECCCCEEcc
Confidence 999999 78899999999999843
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=172.40 Aligned_cols=240 Identities=17% Similarity=0.155 Sum_probs=152.2
Q ss_pred cceeEEEEecCCCCCCcCCCCCCC-CCcccceeCC-cchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccC
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLD-SPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYK 168 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~-~pK~ll~i~g-~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~ 168 (523)
|.|.+|||||| .||||+|+|.. .||||+++.| +|||+++++++... ++.+.++|++. +.+.+++.+.+...
T Consensus 4 ~~~~~vIlaGG--~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~-~~~~~iivt~~~~~~~v~~ql~~~~~--- 77 (478)
T PRK15460 4 SKLYPVVMAGG--SGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGV-ECESPVVICNEQHRFIVAEQLRQLNK--- 77 (478)
T ss_pred CceEEEEECCC--CccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhC-CCCCcEEEeCHHHHHHHHHHHHhcCC---
Confidence 55789999999 99999999997 7999999965 79999999999886 77777777776 56667777765210
Q ss_pred eeEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-c--CCcceEEEEc---cchHH------HHHHHH--h
Q psy17795 169 INIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-W--VQEAVYFTLE---IRSDV------VILMHS--L 232 (523)
Q Consensus 169 ~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~--~~d~~~Lvl~---i~~D~------l~~~h~--~ 232 (523)
..-.++.++...+ ||.|+. ..++. . .++.+++|++ ++.|. +.+... +
T Consensus 78 ~~~~ii~EP~~rn-----------------TApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~ 140 (478)
T PRK15460 78 LTENIILEPAGRN-----------------TAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAE 140 (478)
T ss_pred ccccEEecCCCCC-----------------hHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHh
Confidence 1124566665555 888877 32332 1 1244477777 44442 222211 1
Q ss_pred cCCcceEEEEEEeeCCCCCcceeEEEEcCCC--------CcEEEEeecCCC--------cccceeeeeEEEeeHH-HHHH
Q psy17795 233 YSMAILVTVMATEATRQQSVYYGCIVRKQQT--------SEISHYVEKPST--------FVSTLVNCGVYLFSLD-IFQN 295 (523)
Q Consensus 233 ~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~--------~~V~~~~ekp~~--------~~~~l~~~Giyif~~~-il~~ 295 (523)
.+ .-+|+-..+. ...+.||++..++.. .+|.+|.|||+. ...+++|+|+|+|+.+ +++.
T Consensus 141 ~~--~lvt~GI~Pt--~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~ 216 (478)
T PRK15460 141 AG--KLVTFGIVPD--LPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEE 216 (478)
T ss_pred cC--CEEEEecCCC--CCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHH
Confidence 23 4444444432 234789999875421 269999999973 2457999999999987 5666
Q ss_pred HHHhhcccc----cccc--ccccc----ccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhc
Q psy17795 296 IAAVFQSKQ----DEFY--NGNYM----VNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 296 l~~~~~~~~----~e~~--~~~~~----~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
|++..+... .-+. ..... ....|..-+.+||...++ .+..++.+.+.+--|.|+|++.++.+.
T Consensus 217 ~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavm---Ek~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 217 LKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVM---ERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred HHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhh---cccCceEEEecCCCccccCCHHHHHHh
Confidence 665443210 0000 00000 011133344555544443 344458888999999999998886653
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=155.74 Aligned_cols=240 Identities=18% Similarity=0.193 Sum_probs=151.4
Q ss_pred eeEEEEecCCCCCCcCCCCCC-CCCcccceeCC-cchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCee
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSL-DSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~-~~pK~ll~i~g-~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~ 170 (523)
|..+||||| .||||+||+. ..||||+++.| ++|++.+++++...++.+++++|++. +...+++.+.+... +..
T Consensus 2 ~~pvIlaGG--~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~--~~~ 77 (333)
T COG0836 2 MIPVILAGG--SGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDI--ENA 77 (333)
T ss_pred ceeEEEeCC--CccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhh--ccc
Confidence 568999999 9999999997 59999999965 89999999999986688999999987 55566666665211 111
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH---HhhcccCCcceEEEEc---cchHH--HHHHH------HhcCCc
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY---RNSLHWVQEAVYFTLE---IRSDV--VILMH------SLYSMA 236 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~---~~~i~~~~d~~~Lvl~---i~~D~--l~~~h------~~~~~~ 236 (523)
-.++.++.-.. ||-|+. .......+|.+++|++ .+.|. +.+.. .+.+
T Consensus 78 ~~illEP~gRn-----------------TApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g-- 138 (333)
T COG0836 78 AGIILEPEGRN-----------------TAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEG-- 138 (333)
T ss_pred cceEeccCCCC-----------------cHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcC--
Confidence 11455543333 999988 2222332354467776 44443 22211 2233
Q ss_pred ceEEEEEEeeCCCCCcceeEEEEcC-----CCCcEEEEeecCCC--------cccceeeeeEEEeeHH-HHHHHHHhhcc
Q psy17795 237 ILVTVMATEATRQQSVYYGCIVRKQ-----QTSEISHYVEKPST--------FVSTLVNCGVYLFSLD-IFQNIAAVFQS 302 (523)
Q Consensus 237 ~~~tv~~~~~~~~~~~~~g~v~~d~-----~~~~V~~~~ekp~~--------~~~~l~~~Giyif~~~-il~~l~~~~~~ 302 (523)
.-+|+-..+. .....||++...+ ...+|.+|.|||+. ....++|+|+|+|+.+ +++.++...+.
T Consensus 139 ~lVTfGI~Pt--~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~ 216 (333)
T COG0836 139 GIVTFGIPPT--RPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPD 216 (333)
T ss_pred CEEEEecCCC--CCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcH
Confidence 3444444432 2347899998633 22479999999973 2457999999999987 46666654332
Q ss_pred c----ccccccc-ccc----ccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhc
Q psy17795 303 K----QDEFYNG-NYM----VNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 303 ~----~~e~~~~-~~~----~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
. ...+... ++. ....|...+.+|+...+ |.+..++.+.+.+-.|-|+|++.++++.
T Consensus 217 i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAi---MEkt~~~aVVp~~f~WsDlGsW~Al~~~ 281 (333)
T COG0836 217 IYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAI---MEKTSKAAVVPADFGWSDLGSWHALWEV 281 (333)
T ss_pred HHHHHHHHHhcccccchhcccHHHHhhCcccchhHHH---HhhhcceEEEecCCCcccccCHHHHHHH
Confidence 1 0000000 000 01113334445554444 3455668999999999999998775543
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-16 Score=156.31 Aligned_cols=232 Identities=11% Similarity=0.069 Sum_probs=149.7
Q ss_pred CCCccccc--cccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHH
Q psy17795 82 FPGLTQTF--VSCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKF 159 (523)
Q Consensus 82 ~~~~~~~~--~~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~ 159 (523)
||.|.++- ..|.+.+||||+| .++||. +|+|++++|+|||+|+++.+.+...++.|+|. ++.+++.++
T Consensus 34 ~~~~~~~~~~~~~~i~aIIpA~G--~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~--~~~e~I~~~ 103 (293)
T PLN02917 34 AGAYLRRSRKFRSRVVGIIPARF--ASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVVA--TDDERIAEC 103 (293)
T ss_pred CchhhhhccccCCcEEEEEecCC--CCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEE--CChHHHHHH
Confidence 56665444 4456679999999 999994 59999999999999999999976344554333 456678877
Q ss_pred HHhhhhccCeeEEEEecccccchhhhhcccccccccCCCchhHHH-HhhcccCCcceEEEEc----cc-hHH---HHHHH
Q psy17795 160 VLDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLHWVQEAVYFTLE----IR-SDV---VILMH 230 (523)
Q Consensus 160 l~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~~~~d~~~Lvl~----i~-~D~---l~~~h 230 (523)
+.+ +++.+....+.++.| |+++.. .+.+....|. +++++ ++ .+. +++.+
T Consensus 104 ~~~----~~v~vi~~~~~~~~G-----------------T~~~~~a~~~l~~~~d~-Vlil~gD~PlI~~~tI~~li~~~ 161 (293)
T PLN02917 104 CRG----FGADVIMTSESCRNG-----------------TERCNEALKKLEKKYDI-VVNIQGDEPLIEPEIIDGVVKAL 161 (293)
T ss_pred HHH----cCCEEEeCCcccCCc-----------------hHHHHHHHHhccCCCCE-EEEecCCcCCCCHHHHHHHHHHH
Confidence 754 344442223344455 666644 5566422355 77776 22 222 56655
Q ss_pred HhcCCcceEEEEEEeeCCCCCcceeEEE--EcCCCCcEEEEeec--C---C----CcccceeeeeEEEeeHHHHHHHHHh
Q psy17795 231 SLYSMAILVTVMATEATRQQSVYYGCIV--RKQQTSEISHYVEK--P---S----TFVSTLVNCGVYLFSLDIFQNIAAV 299 (523)
Q Consensus 231 ~~~~~~~~~tv~~~~~~~~~~~~~g~v~--~d~~~~~V~~~~ek--p---~----~~~~~l~~~Giyif~~~il~~l~~~ 299 (523)
+... +..++.++.....+++..||.+. .|++ |+++.|..+ | + +....+.++|+|.|+.+.|..+.+.
T Consensus 162 ~~~~-~~iv~t~~~~~~~~~~~~ygrv~vv~~~~-g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l 239 (293)
T PLN02917 162 QAAP-DAVFSTAVTSLKPEDASDPNRVKCVVDNQ-GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPEL 239 (293)
T ss_pred HhcC-CceEEEEeeecCHHHhcCCCceEEEECCC-CeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcC
Confidence 4322 12222222222335678999885 6766 886755432 1 1 1233588999999999988877665
Q ss_pred hccc-ccccccccccccCCCCCcccccchhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 300 FQSK-QDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 300 ~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
.+.+ ++|||+ +++. +.++|. +.++..+.....++|++|+-.+...+.+
T Consensus 240 ~~~n~e~e~yL------------------tdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 240 PPTPLQLEEDL------------------EQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred CCCcccchhcc------------------HHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 5544 778887 5665 445664 7777665455589999999998887643
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-16 Score=138.40 Aligned_cols=165 Identities=19% Similarity=0.346 Sum_probs=111.3
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|+||||||| .|||+.|||..+||+|+.+.|+|||+++++.|.+. ||++|+||++|.++++ +|+.+ ++++.+.+
T Consensus 1 ~nAIIlAAG--~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~-gI~dI~IVvGYlkE~F-eYLkd---Ky~vtLvy 73 (231)
T COG4750 1 MNAIILAAG--LGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREA-GIDDITIVVGYLKEQF-EYLKD---KYDVTLVY 73 (231)
T ss_pred CceEEEecc--cccccccccccCChHHHHhcCcccHHHHHHHHHHC-CCceEEEEeeehHHHH-HHHHH---hcCeEEEe
Confidence 579999999 99999999999999999999999999999999996 9999999999988777 56765 47777766
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEccchHH--HHHHHHhcCCcceEEEEEEeeCCC
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLEIRSDV--VILMHSLYSMAILVTVMATEATRQ 249 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~i~~D~--l~~~h~~~~~~~~~tv~~~~~~~~ 249 (523)
........ +..+++ ++++.+ ..|+. .|. ..+.++.....+..+-+....
T Consensus 74 N~kY~~yN-----------------n~ySlyla~d~l~n-----tYiid--sDnyl~kNif~~~~~~S~Yfav~~~~--- 126 (231)
T COG4750 74 NPKYREYN-----------------NIYSLYLARDFLNN-----TYIID--SDNYLTKNIFLTKESHSKYFAVYRSG--- 126 (231)
T ss_pred CchHHhhh-----------------hHHHHHHHHHHhcc-----cEEec--cchHhhhhhhhcCcccceEEEEEecC---
Confidence 54433333 667777 888872 23322 343 222233222012222222211
Q ss_pred CCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHH
Q psy17795 250 QSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIA 297 (523)
Q Consensus 250 ~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~ 297 (523)
....| .+..+.+ ++|+++.-. ....++-+|+..|+.+.-+.+.
T Consensus 127 ~tnEw-~l~~~~~-~ki~~v~Ig---g~~~~imsG~sff~~~~~~ki~ 169 (231)
T COG4750 127 KTNEW-LLIYNSD-GKITRVDIG---GLNGYIMSGISFFDAQFSNKIK 169 (231)
T ss_pred CCcee-EEEEcCC-CcEEEEEec---CcccceEeeeeeecchhHHHHH
Confidence 11122 2345555 888887543 2456788899999976544443
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=141.86 Aligned_cols=119 Identities=22% Similarity=0.318 Sum_probs=96.8
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEcCCCCC
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL-----NSIVGRNSKVGNWSRVEGTPCD 461 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~-----~~iIg~~~~Ig~~~~i~~~~~~ 461 (523)
|++.++|.|++.|-+++.||+++.|+++++|+. ..||++|.|.++|+|+ .+.||++|+||++|.|+|
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHG---- 89 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHG---- 89 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEE----
Confidence 444455555555556666666666666666643 7899999999999997 689999999999999987
Q ss_pred CCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 462 PNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 462 ~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
++|+++++||-+++|.+| +.||++|.||+|+.|....+.|...+--++|+..
T Consensus 90 -------c~Ig~~~lIGmgA~vldg-a~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~ 141 (176)
T COG0663 90 -------CTIGDNVLIGMGATVLDG-AVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKV 141 (176)
T ss_pred -------eEECCCcEEecCceEeCC-cEECCCcEEccCCcccCCcCCCCCeEeecCccee
Confidence 588999999999999999 9999999999999998888888888888888654
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=138.69 Aligned_cols=76 Identities=26% Similarity=0.439 Sum_probs=45.6
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
++.+.++++|++++.|++++.|+++++||++|.|++++.|.+++|++++.|++++.+.+++||+++.|++++.+.+
T Consensus 29 ~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~ 104 (163)
T cd05636 29 GAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITAN 104 (163)
T ss_pred CCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcc
Confidence 4445555555555555555555555666666666666666666666666666666666666666666666666644
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=148.55 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=37.2
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-------------ceEECCCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-------------NSIVGRNS 447 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~~iIg~~~ 447 (523)
++.|++.+.|++++.|+|++.|++++.||++|.|+++|+|. ++.||++|.|+++++|. +++||++|
T Consensus 5 ~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 84 (254)
T cd03351 5 TAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNN 84 (254)
T ss_pred CCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCC
Confidence 34444555555555555555555555555555555555443 24555555555555553 34455555
Q ss_pred EECCCcEEc
Q psy17795 448 KVGNWSRVE 456 (523)
Q Consensus 448 ~Ig~~~~i~ 456 (523)
.|+++|.|.
T Consensus 85 ~Ig~~~~I~ 93 (254)
T cd03351 85 TIREFVTIH 93 (254)
T ss_pred EECCccEEe
Confidence 555555543
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=150.62 Aligned_cols=136 Identities=18% Similarity=0.257 Sum_probs=85.8
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~ 458 (523)
+.+.+++.+.+++++.|+++++|++++.||++|+|+++|+|+. +.||++|.|..+++|. ++.||++|.|++|++|+..
T Consensus 104 ~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~d 183 (338)
T COG1044 104 PTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGAD 183 (338)
T ss_pred ccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccC
Confidence 4556666666666666666666666666666666666666643 6667777777777776 4777777777777777654
Q ss_pred CCCCC---------CCCCceecCCCCeecCCCeecCC---cEEeCCCCEECCCcEE-eCeEEcCCcEeCCC
Q psy17795 459 PCDPN---------PNKAFAKMDNPPLFNSNGKLNPS---ITILGDGVTVPGELIV-LNSIVLPYKELTRS 516 (523)
Q Consensus 459 ~~~~~---------~~~~~v~I~~~~~ig~~~~i~~g---~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~ 516 (523)
.++.. ...++|.|+|++.||++.+|..+ -|+||+++.|...+.| .|+.|+.++.|...
T Consensus 184 gFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~ 254 (338)
T COG1044 184 GFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQ 254 (338)
T ss_pred ccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEecc
Confidence 43321 12356777888888887777654 2555666665555555 55555555555443
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=137.80 Aligned_cols=126 Identities=23% Similarity=0.258 Sum_probs=107.7
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP 459 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~ 459 (523)
+++.+.++++|++++.|++++.|.++++||++|.|++++.|+ +++||++|.|++++.|.+++|++++.|++++.+.++
T Consensus 10 ~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~s- 88 (163)
T cd05636 10 EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDS- 88 (163)
T ss_pred CCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecC-
Confidence 467888999999999999999999999999999999999997 599999999999999999999999999999998653
Q ss_pred CCCCCCCCceecCCCCeecCCCeecC-----------------------CcEEeCCCCEECCCcEE-eCeEEcCCcEeCC
Q psy17795 460 CDPNPNKAFAKMDNPPLFNSNGKLNP-----------------------SITILGDGVTVPGELIV-LNSIVLPYKELTR 515 (523)
Q Consensus 460 ~~~~~~~~~v~I~~~~~ig~~~~i~~-----------------------g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~ 515 (523)
.|++++.|++++.+.. -.++||+++.||.+++| .+..|++++.|.+
T Consensus 89 ----------iIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~a 158 (163)
T cd05636 89 ----------VLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYP 158 (163)
T ss_pred ----------EECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECC
Confidence 4666677776665532 12788999999999888 6888888888876
Q ss_pred CC
Q psy17795 516 SF 517 (523)
Q Consensus 516 ~~ 517 (523)
+.
T Consensus 159 gs 160 (163)
T cd05636 159 GC 160 (163)
T ss_pred Cc
Confidence 53
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-15 Score=146.59 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=95.7
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-------------ceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-------------NSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~~iIg~~ 446 (523)
|++.|++++.|++++.|+|++.|++++.||++|.|+++++|. ++.||++|.|++++.|. .++||++
T Consensus 4 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~ 83 (255)
T PRK12461 4 PTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDR 83 (255)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCc
Confidence 567788888888888888888888888888888888888885 58888888888888885 4678888
Q ss_pred CEECCCcEEcCCCCC-------C-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-e------Ce
Q psy17795 447 SKVGNWSRVEGTPCD-------P-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-L------NS 505 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~-------~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~------~~ 505 (523)
+.|+++++|...... . ......+.||++++++.++.+..+ +.||++|+|+.++.| . ++
T Consensus 84 ~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~-v~Igd~a~Ig~~a~V~~~~~IG~~a 162 (255)
T PRK12461 84 NVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGH-VTVGDRAIISGNCLVHQFCRIGALA 162 (255)
T ss_pred eEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCc-eEECCCeEEeCCCEECCCCEECCCc
Confidence 888888888543210 0 001123344444444444444444 566777777776665 2 34
Q ss_pred EEcCCcEeCCCCCCccc
Q psy17795 506 IVLPYKELTRSFKNEIL 522 (523)
Q Consensus 506 ~v~~~~~i~~~~~~~~i 522 (523)
.|++++.|++++|...+
T Consensus 163 ~Vg~gs~V~~dVpp~~i 179 (255)
T PRK12461 163 MMAGGSRISKDVPPYCM 179 (255)
T ss_pred EECCCceEeccCCCCeE
Confidence 56666677777776544
|
|
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=147.45 Aligned_cols=137 Identities=19% Similarity=0.245 Sum_probs=69.5
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-------------ceEECCCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-------------NSIVGRNS 447 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~~iIg~~~ 447 (523)
++.|++.+.|++++.|+|++.|++++.||++|.|+++|.|. +++||++|.|+++++|. +++||++|
T Consensus 4 ~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 83 (254)
T TIGR01852 4 TAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNN 83 (254)
T ss_pred CCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCC
Confidence 44555555555555555555555555555555555555553 35555555555555554 35555555
Q ss_pred EECCCcEEcCCCCC--------CCC-------CCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCe------
Q psy17795 448 KVGNWSRVEGTPCD--------PNP-------NKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNS------ 505 (523)
Q Consensus 448 ~Ig~~~~i~~~~~~--------~~~-------~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~------ 505 (523)
.|+++|+|...... .+. ....+.|+++++++.++.+..+ ++||++|+|++++.| .+.
T Consensus 84 ~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~-~~Igd~~~Ig~~~~i~~~v~Ig~~~ 162 (254)
T TIGR01852 84 TIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH-VEVGDYAIIGGLVAVHQFVRIGRYA 162 (254)
T ss_pred EECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCC-cEECCCcEEeccCEECCCcEECCCC
Confidence 55555555432110 000 0012445555555555555555 555666666666655 333
Q ss_pred EEcCCcEeCCCCCC
Q psy17795 506 IVLPYKELTRSFKN 519 (523)
Q Consensus 506 ~v~~~~~i~~~~~~ 519 (523)
+|++++.|.+++|+
T Consensus 163 ~Ig~~s~V~~~i~~ 176 (254)
T TIGR01852 163 MIGGLSAVSKDVPP 176 (254)
T ss_pred EEeeeeeEeeecCC
Confidence 34444444445553
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.2e-15 Score=144.81 Aligned_cols=137 Identities=16% Similarity=0.194 Sum_probs=106.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-------------eeEECCCCEECCCCEEe--------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-------------ESIILQGASIGNHSLVL-------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-------------~s~Ig~~~~Ig~~~~I~-------- 439 (523)
+.+.+.+++.|++++.|++++.|.++++||++|+|+++++|+ .++||++|.|+++|+|.
T Consensus 21 ~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~ 100 (254)
T TIGR01852 21 PFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGG 100 (254)
T ss_pred CCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCC
Confidence 566777777788888888888888889999999999999996 58899999999999996
Q ss_pred ceEECCCCEECCCcEEc-CCCCCC-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCc
Q psy17795 440 NSIVGRNSKVGNWSRVE-GTPCDP-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYK 511 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~-~~~~~~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~ 511 (523)
.++||+++.|+.++.|. ++.++. -.....++|+++++||.++.+.++ +.||++++|+++++|... |.+++
T Consensus 101 ~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V~~~-i~~~~ 178 (254)
T TIGR01852 101 VTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQF-VRIGRYAMIGGLSAVSKD-VPPYG 178 (254)
T ss_pred cEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCC-cEECCCCEEeeeeeEeee-cCCCc
Confidence 46888888887777773 222222 122456889999999999999888 777999999999999654 67777
Q ss_pred EeCCCCCCc
Q psy17795 512 ELTRSFKNE 520 (523)
Q Consensus 512 ~i~~~~~~~ 520 (523)
.+.. .|+.
T Consensus 179 ~~~G-~pa~ 186 (254)
T TIGR01852 179 LVEG-NRAR 186 (254)
T ss_pred EEec-CcCe
Confidence 7753 3543
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-15 Score=149.52 Aligned_cols=135 Identities=17% Similarity=0.294 Sum_probs=104.9
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~ 458 (523)
|++.+++++.|++++.|++++.|++++.||++|.|++++.|+ +++||++|.|+++++|. +++||++|.|+++|+|+..
T Consensus 96 p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~ 175 (324)
T TIGR01853 96 PTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSD 175 (324)
T ss_pred CCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCC
Confidence 688899999999999999999999999999999999999994 59999999999999998 8999999999999999754
Q ss_pred CCCCC----------CCCCceecCCCCeecCCCeecC---CcEEeCCCCEECCCcEE-eCeEEcCCcEeCC
Q psy17795 459 PCDPN----------PNKAFAKMDNPPLFNSNGKLNP---SITILGDGVTVPGELIV-LNSIVLPYKELTR 515 (523)
Q Consensus 459 ~~~~~----------~~~~~v~I~~~~~ig~~~~i~~---g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~ 515 (523)
.++.. ...+.+.|++++.||++++|.. +.++||+++.|+..+.| .++.|++++.|..
T Consensus 176 gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~ 246 (324)
T TIGR01853 176 GFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVA 246 (324)
T ss_pred CccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECC
Confidence 32221 1124688999999999887742 22566666666666666 5556665555544
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-15 Score=146.28 Aligned_cols=121 Identities=13% Similarity=0.115 Sum_probs=77.7
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-------------eeEECCCCEECCCCEEe--------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-------------ESIILQGASIGNHSLVL-------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-------------~s~Ig~~~~Ig~~~~I~-------- 439 (523)
+.+.|.+++.|++++.|++++.|++++.||++|.|+++++|+ .++||++|.|+++|+|.
T Consensus 22 p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~ 101 (254)
T cd03351 22 PFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGG 101 (254)
T ss_pred CCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCC
Confidence 456666777777777777777777788888888888888885 57899999999999886
Q ss_pred ceEECCCCEECCCcEEcCC-CCCC-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 440 NSIVGRNSKVGNWSRVEGT-PCDP-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~-~~~~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
.++||++|.|++++.|... .++. -....+++|+++++|+.++.|.++ +.||++++|+++++|
T Consensus 102 ~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 102 VTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF-CRIGRHAMVGGGSGV 171 (254)
T ss_pred ceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC-cEECCCCEECcCCEE
Confidence 3788888888887777431 1110 001123444444555544444444 333555555555544
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-15 Score=145.69 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=58.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-------------ceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-------------NSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~~iIg~~ 446 (523)
|++.|++.+.|++++.|+|++.|++++.||++|.|+++++|. +++||++|.|++++.|. .++||++
T Consensus 7 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~ 86 (262)
T PRK05289 7 PTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDN 86 (262)
T ss_pred CCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCC
Confidence 567777777777777777777777777777777777777774 47778888888877775 3778888
Q ss_pred CEECCCcEEcCC
Q psy17795 447 SKVGNWSRVEGT 458 (523)
Q Consensus 447 ~~Ig~~~~i~~~ 458 (523)
|.|+++|+|...
T Consensus 87 ~~I~e~~~I~~~ 98 (262)
T PRK05289 87 NTIREFVTINRG 98 (262)
T ss_pred CEECCCeEEecc
Confidence 888887777653
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=136.22 Aligned_cols=141 Identities=20% Similarity=0.278 Sum_probs=80.8
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEc-----
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE----- 456 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~----- 456 (523)
++.++++++|++++.|++++.|++++.||++|.|++++.|+++.||++|.|++++.|.+++|++++.|++++.|.
T Consensus 9 ~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~I 88 (193)
T cd03353 9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVL 88 (193)
T ss_pred eEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEE
Confidence 445566666666666666666666666666666666666666666666666666666655555555555555543
Q ss_pred -------------CCCCCCC------CCCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eC
Q psy17795 457 -------------GTPCDPN------PNKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LN 504 (523)
Q Consensus 457 -------------~~~~~~~------~~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~ 504 (523)
++.++.+ ..-..+.|++++.||.++.+.. ..++||+++.||.++++ .+
T Consensus 89 g~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~ 168 (193)
T cd03353 89 GEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDG 168 (193)
T ss_pred CCCCEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCC
Confidence 2111110 0011234555555555443311 12456666666666544 56
Q ss_pred eEEcCCcEeCCCCCCccc
Q psy17795 505 SIVLPYKELTRSFKNEIL 522 (523)
Q Consensus 505 ~~v~~~~~i~~~~~~~~i 522 (523)
+.|++++.|++++|+..+
T Consensus 169 ~~i~~gs~V~~~v~~~~~ 186 (193)
T cd03353 169 ATIAAGSTITKDVPPGAL 186 (193)
T ss_pred cEECCCCEEccccCCCCE
Confidence 777888888888886544
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-15 Score=144.60 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=82.8
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-------------eeEECCCCEECCCCEEec-------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-------------ESIILQGASIGNHSLVLN------- 440 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-------------~s~Ig~~~~Ig~~~~I~~------- 440 (523)
+.+.|.+++.|++++.|++++.|.++++||++|.|+++++|+ .+.||++|.|+++|+|..
T Consensus 25 p~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~ 104 (262)
T PRK05289 25 PFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGG 104 (262)
T ss_pred CCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCC
Confidence 455666667777777777777777788888888888888886 388999999999999873
Q ss_pred -eEECCCCEECCCcEEcCC-CCCC-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 441 -SIVGRNSKVGNWSRVEGT-PCDP-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 441 -~iIg~~~~Ig~~~~i~~~-~~~~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
++||+++.|+.++.|... .++. ....+++.|+++++||.++.|.++ +.||+++.|+++++|.
T Consensus 105 ~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~gs~V~ 175 (262)
T PRK05289 105 VTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQF-VRIGAHAMVGGMSGVS 175 (262)
T ss_pred eeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCC-CEECCCCEEeeeccee
Confidence 467887777777776421 1111 011245566666666666666666 4456666666666663
|
|
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=148.83 Aligned_cols=134 Identities=16% Similarity=0.243 Sum_probs=82.1
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~ 458 (523)
+++.+.+.+.+++++.|++++.|++++.||++|+|+++|.|++ +.||++|.|+++++|. ++.||++|.|+++++|+..
T Consensus 105 ~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~ 184 (343)
T PRK00892 105 PSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSD 184 (343)
T ss_pred CCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEecc
Confidence 4666677777777777777777777777777777777777743 6677777777777775 4557777777777777543
Q ss_pred CCCCCCC---------CCceecCCCCeecCCCeecC---CcEEeCCCCEECCCcEE-eCeEEcCCcEeC
Q psy17795 459 PCDPNPN---------KAFAKMDNPPLFNSNGKLNP---SITILGDGVTVPGELIV-LNSIVLPYKELT 514 (523)
Q Consensus 459 ~~~~~~~---------~~~v~I~~~~~ig~~~~i~~---g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~ 514 (523)
.++.... .+.+.|++++.||++++|.. +.++||+++.|+.++.| .++.|++++.|.
T Consensus 185 ~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~ 253 (343)
T PRK00892 185 GFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIA 253 (343)
T ss_pred CcCcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEe
Confidence 2221111 13466777777777666642 12555555555555555 444444444443
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=136.79 Aligned_cols=118 Identities=21% Similarity=0.353 Sum_probs=90.5
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEcCCCC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL-----NSIVGRNSKVGNWSRVEGTPC 460 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~-----~~iIg~~~~Ig~~~~i~~~~~ 460 (523)
.|+++++|++++.|.++++||++|.|+++|+|.. ++|+++|.||++|.|+ +++|++++.||+++.+.+
T Consensus 12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g--- 88 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG--- 88 (196)
T ss_pred ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee---
Confidence 4566666666666666777777777777777754 5789999999999986 588999999999998875
Q ss_pred CCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeE-EcCCcEeCCCCCCc
Q psy17795 461 DPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSI-VLPYKELTRSFKNE 520 (523)
Q Consensus 461 ~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~-v~~~~~i~~~~~~~ 520 (523)
+.|+++++||.++.|.+| ++||+++.|++|++|...+ +.++.. -.+.|+.
T Consensus 89 --------~vIG~~v~IG~ga~V~~g-~~IG~~s~Vgags~V~~~~~ip~~~~-~~G~Pa~ 139 (196)
T PRK13627 89 --------CVIGRDALVGMNSVIMDG-AVIGEESIVAAMSFVKAGFQGEKRQL-LMGTPAR 139 (196)
T ss_pred --------EEECCCCEECcCCccCCC-cEECCCCEEcCCCEEeCCcCcCCCcE-EEecCCE
Confidence 579999999999999999 7789999999999995443 333433 3355543
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=145.80 Aligned_cols=139 Identities=18% Similarity=0.228 Sum_probs=83.6
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe--------------------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-------------------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-------------------- 439 (523)
+.+.|++++.|++++.|++++.|+++++||++|.|+++++|+ +++||++|.|+++|+|.
T Consensus 114 ~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~ 193 (324)
T TIGR01853 114 PNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQI 193 (324)
T ss_pred CCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCcc
Confidence 345555666666666666666666677777777777777775 57888888888888773
Q ss_pred -ceEECCCCEECCCcEEcCCCCCCCCCCC------------ceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE----
Q psy17795 440 -NSIVGRNSKVGNWSRVEGTPCDPNPNKA------------FAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV---- 502 (523)
Q Consensus 440 -~~iIg~~~~Ig~~~~i~~~~~~~~~~~~------------~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i---- 502 (523)
.++||++|.||++++|..........+. .++||+++.|+.++.+..+ ++||++|+||.++.|
T Consensus 194 G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~-~~IG~~~~ig~~~~I~~~v 272 (324)
T TIGR01853 194 GRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGS-TKIGRNVIIGGQVGVAGHL 272 (324)
T ss_pred ceEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCc-cEECCCeEEccccccccCC
Confidence 3778888888888877543322211122 2233333333333333333 455666666655544
Q ss_pred ---eCeEEcCCcEeCCCCCCc
Q psy17795 503 ---LNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 503 ---~~~~v~~~~~i~~~~~~~ 520 (523)
.+++|++++.|++++|+.
T Consensus 273 ~Ig~~~~ig~~s~V~~~v~~~ 293 (324)
T TIGR01853 273 EIGDNVTIGAKSGVTKSIPPP 293 (324)
T ss_pred EECCCCEEccCCEeCCcCCCC
Confidence 356666777777777644
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=135.47 Aligned_cols=118 Identities=19% Similarity=0.341 Sum_probs=83.8
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEe----eeEECCCCEECCCCEEe-----ceEECCCCEECCCcEEcCCCC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK----ESIILQGASIGNHSLVL-----NSIVGRNSKVGNWSRVEGTPC 460 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~----~s~Ig~~~~Ig~~~~I~-----~~iIg~~~~Ig~~~~i~~~~~ 460 (523)
.|+++++|++++.|.++++||++|.|+++|+|. .++||++|.||++|+|+ +++||+++.|++++.|.+
T Consensus 10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~--- 86 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG--- 86 (192)
T ss_pred cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcC---
Confidence 445666666666666667777777777777774 36788888888888883 688888888888888875
Q ss_pred CCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCc
Q psy17795 461 DPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 461 ~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~ 520 (523)
+.|+++++||.++.+.++ ++||++|.|+++++| .+..+.++..+ .+.|++
T Consensus 87 --------siIg~~~~IG~ga~I~~g-~~IG~~s~Vgags~V~~~~~ip~~~l~-~G~Pak 137 (192)
T TIGR02287 87 --------CIVGRNALVGMNAVVMDG-AVIGENSIVAASAFVKAGAEMPAQYLV-VGSPAK 137 (192)
T ss_pred --------CEECCCCEECCCcccCCC-eEECCCCEEcCCCEECCCCEECCCeEE-EccCCE
Confidence 467888888888888777 778888888888888 34444444433 333443
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=130.89 Aligned_cols=110 Identities=21% Similarity=0.417 Sum_probs=72.5
Q ss_pred CCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEE-----eceEECCCCEECCCcEEcCCCCCC
Q psy17795 392 HSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLV-----LNSIVGRNSKVGNWSRVEGTPCDP 462 (523)
Q Consensus 392 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I-----~~~iIg~~~~Ig~~~~i~~~~~~~ 462 (523)
++++.|++++.|.+++.||++|.|+++|+|.. +.||++|.|+++|+| .+++||+++.|++++.+.+
T Consensus 4 ~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~----- 78 (155)
T cd04745 4 DPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG----- 78 (155)
T ss_pred CCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEEC-----
Confidence 45555555555555666666666666666643 667777777777777 3577777777777776654
Q ss_pred CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEe
Q psy17795 463 NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKEL 513 (523)
Q Consensus 463 ~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i 513 (523)
+.|+++++|+.++.|.++ ++||+++.|++++++ .+..|.+++.+
T Consensus 79 ------~~Ig~~~~Ig~~~~I~~g-~~Ig~~~~Ig~~s~v~~~~~i~~~~~v 123 (155)
T cd04745 79 ------CTIGRNALVGMNAVVMDG-AVIGEESIVGAMAFVKAGTVIPPRSLI 123 (155)
T ss_pred ------CEECCCCEECCCCEEeCC-CEECCCCEECCCCEeCCCCEeCCCCEE
Confidence 466777777777777776 667888888888777 34445544444
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-14 Score=134.25 Aligned_cols=127 Identities=15% Similarity=0.282 Sum_probs=99.9
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCC-----
Q psy17795 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPN----- 463 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~----- 463 (523)
+.+++++.|++++.| .++.||++|.|+++|.|.+++||++|.|+.+|.|.+++||++|.|++++.|.+..+...
T Consensus 3 ~~~~~~~~I~~~a~i-~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~ 81 (204)
T TIGR03308 3 VLLSPEPTLHPTAEL-TESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLH 81 (204)
T ss_pred cccCCCCeECCCcEE-eccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccc
Confidence 345677788888888 46899999999999999999999999999999999999999999999999976432110
Q ss_pred ----------------------CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCC
Q psy17795 464 ----------------------PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKN 519 (523)
Q Consensus 464 ----------------------~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~ 519 (523)
.....+.|+++++||.++.|.+| ++||++++|+++++|.+. |.|+..+ .+.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~g-v~Ig~~~~I~~gs~v~~~-i~~~~~~-~G~Pa 156 (204)
T TIGR03308 82 HFTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPG-VTIGNGAVIAAGAVVTKD-VAPYTIV-AGVPA 156 (204)
T ss_pred ccccccccccccccccccccccccCCCeEECCCCEECCCCEECCC-CEECCCCEECCCCEECCC-CCCCcEE-EecCc
Confidence 12357889999999999999988 777999999999988543 3344333 34444
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-14 Score=129.99 Aligned_cols=112 Identities=22% Similarity=0.303 Sum_probs=70.9
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEe----eeEECCCCEECCCCEEece-----------EECCCCEECCCcEE
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK----ESIILQGASIGNHSLVLNS-----------IVGRNSKVGNWSRV 455 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~----~s~Ig~~~~Ig~~~~I~~~-----------iIg~~~~Ig~~~~i 455 (523)
|++++.|++++.|.+++.||++|.|++++.|. .++||++|.|+++|+|.+. +||+++.|+.++.+
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence 45666666666666666666666666666663 2567777777777777533 34455555555544
Q ss_pred cCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeC
Q psy17795 456 EGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELT 514 (523)
Q Consensus 456 ~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~ 514 (523)
.+ ++||++|+||.+++|.++ ++||++|+||++++| .+..+.+++++.
T Consensus 82 ~~-----------~~IGd~~~Ig~~a~I~~g-v~Ig~~~~IgagsvV~~~~~i~~~~vi~ 129 (164)
T cd04646 82 EA-----------LKIGNNNVFESKSFVGKN-VIITDGCIIGAGCKLPSSEILPENTVIY 129 (164)
T ss_pred Ee-----------eEECCCCEEeCCCEECCC-CEECCCCEEeCCeEECCCcEECCCeEEe
Confidence 32 567777777777777777 666777777777777 344555554443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-14 Score=140.15 Aligned_cols=106 Identities=23% Similarity=0.307 Sum_probs=79.9
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe--------------------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-------------------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-------------------- 439 (523)
+.++|.+++.||+++.|+++++|++++.||++|+|.++++|.+ +.||++|.|+++++|.
T Consensus 122 ~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g 201 (338)
T COG1044 122 PNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIG 201 (338)
T ss_pred CCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceec
Confidence 5677777777777888888888888888888888888888865 8888888888888873
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
+++|+++|.||.++.|.....++.....+++|++.+.|++++.|..+
T Consensus 202 ~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~ 248 (338)
T COG1044 202 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEH 248 (338)
T ss_pred eEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCC
Confidence 47899999999999997766655555556666666666666555543
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=133.53 Aligned_cols=129 Identities=16% Similarity=0.267 Sum_probs=104.6
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEE-eeeEECCCCEECCCCEEe-------------ceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVL-------------NSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I-~~s~Ig~~~~Ig~~~~I~-------------~~iIg~~ 446 (523)
|++.|.+.+.|++++.|+|.|+|++++.||++++|+++++| +.+.||.++.|-+++.|. ..+||++
T Consensus 8 PTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~ 87 (260)
T COG1043 8 PTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDN 87 (260)
T ss_pred cceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCC
Confidence 67788888888888888888888888888888888888888 558999999999999884 4799999
Q ss_pred CEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC-eEEcCCcEe
Q psy17795 447 SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN-SIVLPYKEL 513 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~-~~v~~~~~i 513 (523)
+.|.++++|..+. ...++.+.||+++++.+.+.|..+ |+||++|++..++.+.+ ..|+..+.|
T Consensus 88 n~IRE~vTi~~GT---~~g~g~T~IGdnnl~May~HVAHD-C~iGn~~ilaNnatLAGHV~igD~aii 151 (260)
T COG1043 88 NTIREFVTIHRGT---VQGGGVTRIGDNNLIMAYAHVAHD-CVIGNNCILANNATLAGHVEVGDYAII 151 (260)
T ss_pred CeEeeEEEEeccc---cCCceeEEECCCCEEEEeeeeecc-ceecCcEEEecCCeEeccEEECCEEEE
Confidence 9999999996542 233467889999999999999998 88999998888888843 334343333
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-14 Score=137.16 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=85.9
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe-----------ceEECCCCEECCCcE
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL-----------NSIVGRNSKVGNWSR 454 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~-----------~~iIg~~~~Ig~~~~ 454 (523)
.|++++.|.+++.|.+++.||++|.|+++|+|.. ++||++|.|+++|+|. +++||++|.||++|.
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~av 133 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAV 133 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCce
Confidence 3455555555555555666666666666666643 5788888888888884 578889999988888
Q ss_pred EcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCc
Q psy17795 455 VEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 455 i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~ 520 (523)
|.+ +.|+++|+||.+++|.+| ++||++|.|++|++| .+..|.++..+. +.|+.
T Consensus 134 I~g-----------~~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV~~~~~I~~~~~~~-G~PA~ 187 (269)
T PLN02296 134 LHG-----------CTVEDEAFVGMGATLLDG-VVVEKHAMVAAGALVRQNTRIPSGEVWA-GNPAK 187 (269)
T ss_pred ecC-----------CEECCCcEECCCcEECCC-eEECCCCEECCCCEEecCCEeCCCeEEe-ccCcE
Confidence 865 468888999999888888 778999999999988 455566666543 34543
|
|
| >PF05486 SRP9-21: Signal recognition particle 9 kDa protein (SRP9); InterPro: IPR008832 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-15 Score=119.47 Aligned_cols=61 Identities=30% Similarity=0.559 Sum_probs=50.1
Q ss_pred cccccceeee-----ccCCCccEEEEEEEe-----cCCeEEEEEecCce--EEEEEcccchhhhhHHHhhhcc
Q psy17795 3 YDHKNGYLKL-----KMTDDNARYSMKYDH-----KNGYLKLKMTDDNV--CLIYKTEMSQDLKKIDNAKKHV 63 (523)
Q Consensus 3 ~~~~~~~~~~-----~~~p~~~r~~~k~~~-----~~~~~~~k~t~~~~--~~~~~~~~~~~~~~~e~~~~~~ 63 (523)
+.+|+-|++. +.+|.+|||+|||+| ++|+|+||+|||.. |+||+|+.++|++||++++..+
T Consensus 2 ~~~~deF~~~s~~L~~a~P~~TR~~~kY~~~~~~~~~~~l~lK~td~~~g~clKykT~k~~dv~Rl~~~~g~l 74 (79)
T PF05486_consen 2 VKSWDEFIEQSEKLYEANPSTTRYSIKYRHPSKKPPTGKLVLKTTDPHSGVCLKYKTDKAKDVSRLESFLGPL 74 (79)
T ss_dssp ESHHHHHHHHHHHHHHH-TTT-EEEEEBBT-----TTTBEEEEEE-SS---EEEEEE-SGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEEEecccccCCCceEEEEEeCCCceeEEEEEeCHHHHHHHHHHHHHHH
Confidence 3567777774 467999999999999 99999999999999 9999999999999999998664
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the 9 kDa SRP9 component. Both SRP9 and SRP14 have the same (beta)-alpha-beta(3)-alpha fold. The heterodimer has pseudo two-fold symmetry and is saddle-like, consisting of a curved six-stranded beta-sheet that has four helices packed on the convex side and an exposed concave surface lined with positively charged residues. The SRP9/SRP14 heterodimer is essential for SRP RNA binding, mediating the pausing of synthesis of ribosome associated nascent polypeptides that have been engaged by the targeting domain of SRP [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0045900 negative regulation of translational elongation, 0048500 signal recognition particle; PDB: 1E8O_A 1RY1_C. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=133.71 Aligned_cols=118 Identities=10% Similarity=0.195 Sum_probs=87.7
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe-----------ceEECCCCEECCCcEE
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL-----------NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~-----------~~iIg~~~~Ig~~~~i 455 (523)
++++++|.+++.|.+++.||++|.|+.+++|.. .+||++|.|+++|+|+ +++||++|.||++|.|
T Consensus 62 i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L 141 (246)
T PLN02472 62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL 141 (246)
T ss_pred cCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEE
Confidence 455666666666666677777777777776643 6788888888888884 4788888888888888
Q ss_pred cCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCcc
Q psy17795 456 EGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 456 ~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~~ 521 (523)
.+ ++|++++.||.+++|.++ ++||++|.|+++++| .+..+.++..+. +.|+..
T Consensus 142 ~~-----------~~Igd~v~IG~~svI~~g-avIg~~~~Ig~gsvV~~g~~Ip~g~~~~-G~PA~~ 195 (246)
T PLN02472 142 RS-----------CTIEPECIIGQHSILMEG-SLVETHSILEAGSVLPPGRRIPTGELWA-GNPARF 195 (246)
T ss_pred CC-----------eEEcCCCEECCCCEECCC-CEECCCCEECCCCEECCCCEeCCCCEEE-ecCCEE
Confidence 65 578888888888888888 788999999999988 566676666654 556543
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=125.29 Aligned_cols=114 Identities=25% Similarity=0.346 Sum_probs=81.9
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEee-----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEcCCC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVL-----NSIVGRNSKVGNWSRVEGTP 459 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~-----~~iIg~~~~Ig~~~~i~~~~ 459 (523)
.|++++.|++++.|.+++.||++|.|++++.|.. +.||++|.|++++.|. .+.||+++.|++++.|.+
T Consensus 4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g-- 81 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHG-- 81 (167)
T ss_pred EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeC--
Confidence 4556666666666666666666666666666643 6788888888888884 577888888888888865
Q ss_pred CCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCC
Q psy17795 460 CDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTR 515 (523)
Q Consensus 460 ~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~ 515 (523)
.+.||++|+||.++.|. . +.||++|.||+++.|.+..+++++.+..
T Consensus 82 --------~~~Ig~~~~Ig~~~~I~-~-~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~ 127 (167)
T cd00710 82 --------PAYIGDNCFIGFRSVVF-N-AKVGDNCVIGHNAVVDGVEIPPGRYVPA 127 (167)
T ss_pred --------CEEECCCCEECCCCEEE-C-CEECCCCEEcCCCEEeCCEeCCCCEECC
Confidence 36788888888888775 3 6678888888888886666666666543
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-13 Score=128.72 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=77.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe--------------------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-------------------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-------------------- 439 (523)
+.+.+.+++.|+++++|++++.|++++.||++|.|++++.|++ ++|+++|.|++++.|.
T Consensus 12 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (205)
T cd03352 12 PNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLG 91 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcc
Confidence 3555666666666666666666666777777777777777755 7777777777776662
Q ss_pred ceEECCCCEECCCcEEcCCCC-----CC------C-CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-----
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPC-----DP------N-PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV----- 502 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~-----~~------~-~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i----- 502 (523)
.+.|++++.|++++.+..... +. + .....+.|++++.++.++.+..+ +.||++|.|+++++|
T Consensus 92 ~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~ig~~~~v~~~~~ 170 (205)
T cd03352 92 GVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVIIGGQVGIAGHLT 170 (205)
T ss_pred eEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEEcCCCEEeCCcE
Confidence 356666666666666643110 00 0 00123344444444444444343 445666666666555
Q ss_pred --eCeEEcCCcEeCCCCCC
Q psy17795 503 --LNSIVLPYKELTRSFKN 519 (523)
Q Consensus 503 --~~~~v~~~~~i~~~~~~ 519 (523)
.++.|++++.+.+++|+
T Consensus 171 ig~~~~i~~~s~v~~~~~~ 189 (205)
T cd03352 171 IGDGVVIGAGSGVTSIVPP 189 (205)
T ss_pred ECCCCEEcCCCEEeeECCC
Confidence 23445555555555553
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-13 Score=139.27 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=87.3
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe--------------------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-------------------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-------------------- 439 (523)
+.+.|++++.|++++.|++++.|++++.||++|.|+++++|.+ +.||++|.|+++|+|.
T Consensus 123 ~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g 202 (343)
T PRK00892 123 PNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLG 202 (343)
T ss_pred CCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccc
Confidence 4556666667777777777777777777777777777777754 6688888888888883
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCC------------CceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-----
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNK------------AFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV----- 502 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~------------~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i----- 502 (523)
+++||+++.||++++|..........+ ..++||+++.|++++.|..+ ++||++|.||.++.|
T Consensus 203 ~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~-~~iG~~~~ig~~~~i~~~~~ 281 (343)
T PRK00892 203 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGS-TKIGRYCMIGGQVGIAGHLE 281 (343)
T ss_pred cEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCC-CEECCceEECCCCEEcCCCE
Confidence 478888888888888753222111111 23444444444444444444 556777777776666
Q ss_pred --eCeEEcCCcEeCCCCCC
Q psy17795 503 --LNSIVLPYKELTRSFKN 519 (523)
Q Consensus 503 --~~~~v~~~~~i~~~~~~ 519 (523)
.+++|++++.|.+++|.
T Consensus 282 ig~~~~i~~~s~v~~~i~~ 300 (343)
T PRK00892 282 IGDGVTITAMSGVTKSIPE 300 (343)
T ss_pred ECCCCEEecCCeeCCccCC
Confidence 24555566666666664
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=129.26 Aligned_cols=125 Identities=21% Similarity=0.300 Sum_probs=101.4
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCC--C
Q psy17795 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPN--P 464 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~--~ 464 (523)
.+.|+|.+.|.|++.|++++.||+.|+|+++++| ++++.|+++++|+ .+.||+++.|-+++.|++.+.+.+ .
T Consensus 3 ~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~i-----g~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykg 77 (260)
T COG1043 3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEI-----GDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKG 77 (260)
T ss_pred ccccCcceeeCCCCCcCCCCEECceEEECCCcEE-----CCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCC
Confidence 3567777777777777788888888888877775 4888899999998 799999999999999998777653 4
Q ss_pred CCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCC
Q psy17795 465 NKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-LNSIVLPYKELTRSF 517 (523)
Q Consensus 465 ~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~ 517 (523)
+.+.+.||+++.|.+.++|.. +.|.||+++.+-+.+.| .+|+|+.++++..++
T Consensus 78 e~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNna 137 (260)
T COG1043 78 EPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNA 137 (260)
T ss_pred CceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCC
Confidence 457888999999999887764 56888998888888888 788888887776655
|
|
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=131.14 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=61.4
Q ss_pred CCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecC
Q psy17795 394 SASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMD 472 (523)
Q Consensus 394 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~ 472 (523)
++.|.|++.|++++.||++++|.+..+-..+.||++|.|+.+++|. ++.||++|.|+.++.|++... ......++|+
T Consensus 100 ~~rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~e--p~~~~~ViIg 177 (269)
T TIGR00965 100 GFRVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLE--PLQANPTIIE 177 (269)
T ss_pred CEEECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcc--cCCCCCeEEC
Confidence 3333333333344444444444332111123445555555555554 456666666666665544211 1233557788
Q ss_pred CCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEc
Q psy17795 473 NPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVL 508 (523)
Q Consensus 473 ~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~ 508 (523)
++|+||+++.|.+| ++||++|+||+|++| .+..|+
T Consensus 178 Dnv~IGa~a~I~~G-V~IG~gavIGaGavI~~~~~I~ 213 (269)
T TIGR00965 178 DNCFIGARSEIVEG-VIVEEGSVISMGVFIGQSTKIY 213 (269)
T ss_pred CCCEECCCCEEcCC-CEECCCCEEeCCCEECCCCEEe
Confidence 88888888877777 566888888888777 445554
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-13 Score=118.51 Aligned_cols=90 Identities=10% Similarity=0.172 Sum_probs=55.7
Q ss_pred CCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCe
Q psy17795 428 QGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNS 505 (523)
Q Consensus 428 ~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~ 505 (523)
++|.|+++++|. ++.||++|.|++++.|.+... ......+.|+++++|+++++|.++ +.||+++.|+++++| .+.
T Consensus 36 ~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~--~~~~~~v~Ig~~~~Ig~~a~I~~g-v~Ig~~~~Ig~g~~V~~~~ 112 (139)
T cd03350 36 EGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLE--PLQATPVIIEDDVFIGANCEVVEG-VIVGKGAVLAAGVVLTQST 112 (139)
T ss_pred CCeEEcCCCEECCCCEECCCCEECCCCEECCccc--ccccCCeEECCCCEECCCCEECCC-CEECCCCEEcCCCEEcCCe
Confidence 334444444442 456666666666666654311 112245777888888888888777 667888888888877 445
Q ss_pred EEc---CCcEeCCCCCCc
Q psy17795 506 IVL---PYKELTRSFKNE 520 (523)
Q Consensus 506 ~v~---~~~~i~~~~~~~ 520 (523)
.|+ ++..+.+++|..
T Consensus 113 ~I~~~~~~~~v~~~~~~~ 130 (139)
T cd03350 113 PIYDRETGEIYYGRVPPG 130 (139)
T ss_pred EecccCcccEEecccCCC
Confidence 554 566777777754
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-13 Score=130.95 Aligned_cols=137 Identities=13% Similarity=0.123 Sum_probs=100.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-------------eeEECCCCEECCCCEEe-------c
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-------------ESIILQGASIGNHSLVL-------N 440 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-------------~s~Ig~~~~Ig~~~~I~-------~ 440 (523)
|.+.|.+++.|++++.|++++.|.+++.||++|.|++++.|+ .+.||++|.|+++++|. .
T Consensus 22 p~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~ 101 (255)
T PRK12461 22 PFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGV 101 (255)
T ss_pred CCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCc
Confidence 455666667777777777777777788888888888888886 36799999999999996 2
Q ss_pred eEECCC------CEECCCcEEcCCCC-CCC-CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcE
Q psy17795 441 SIVGRN------SKVGNWSRVEGTPC-DPN-PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKE 512 (523)
Q Consensus 441 ~iIg~~------~~Ig~~~~i~~~~~-~~~-~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~ 512 (523)
+.||++ +.|+++|.|++... ..+ .-.+++.|+++++||.++.|.++ +.||+++.|+++++|... |.|++.
T Consensus 102 t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~-~~IG~~a~Vg~gs~V~~d-Vpp~~i 179 (255)
T PRK12461 102 TRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQF-CRIGALAMMAGGSRISKD-VPPYCM 179 (255)
T ss_pred EEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCC-CEECCCcEECCCceEecc-CCCCeE
Confidence 445554 44555555554332 221 22468999999999999999999 777999999999999554 567766
Q ss_pred eCCCCCCc
Q psy17795 513 LTRSFKNE 520 (523)
Q Consensus 513 i~~~~~~~ 520 (523)
+. +.|+.
T Consensus 180 ~~-G~pa~ 186 (255)
T PRK12461 180 MA-GHPTN 186 (255)
T ss_pred Ee-cCcce
Confidence 64 66654
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.8e-13 Score=124.24 Aligned_cols=127 Identities=20% Similarity=0.316 Sum_probs=78.1
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCC-------------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRN------------- 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~------------- 446 (523)
+++.|.+++.|++++.|++++.|+. +.||++|.|++++.|.+++|++++.|++++.|. +++|+++
T Consensus 26 ~~a~i~~~~~Ig~~~~I~~~~~I~~-~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ 104 (193)
T cd03353 26 PGVILEGKTVIGEDCVIGPNCVIKD-STIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKST 104 (193)
T ss_pred CCCEEeCcCEECCCCEECCCcEEeC-CEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecce
Confidence 3555666666666666666666643 366666666666666666666665555555553 3333322
Q ss_pred ---------------------CEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 447 ---------------------SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 447 ---------------------~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
+.||+++.+.+. .......+.|++++++|.++.+.++ +.||+++.|+++++|.+.
T Consensus 105 ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~---~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~gs~V~~~ 180 (193)
T cd03353 105 IGEGSKANHLSYLGDAEIGEGVNIGAGTITCNY---DGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAGSTITKD 180 (193)
T ss_pred EcCCCEecccceecccEECCCCEEcCceEEecc---CCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCCCEEccc
Confidence 222222222110 0111236889999999999999999 678999999999999654
Q ss_pred EEcCCcEe
Q psy17795 506 IVLPYKEL 513 (523)
Q Consensus 506 ~v~~~~~i 513 (523)
+.|++.+
T Consensus 181 -v~~~~~v 187 (193)
T cd03353 181 -VPPGALA 187 (193)
T ss_pred -cCCCCEE
Confidence 3444443
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.1e-13 Score=120.43 Aligned_cols=110 Identities=21% Similarity=0.325 Sum_probs=62.2
Q ss_pred CCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEec-----eEECCCCEECCCcEEcCCCCCC
Q psy17795 392 HSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVLN-----SIVGRNSKVGNWSRVEGTPCDP 462 (523)
Q Consensus 392 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~~-----~iIg~~~~Ig~~~~i~~~~~~~ 462 (523)
+++++|+++++|.++++||++|.|++++.|.. ++||++|.|+++|+|.. ++||+++.|+.+|.+.+
T Consensus 3 ~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~----- 77 (153)
T cd04645 3 DPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG----- 77 (153)
T ss_pred cCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEee-----
Confidence 34444444444444555555555555555532 46666666666666654 46666666666666643
Q ss_pred CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEe
Q psy17795 463 NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKEL 513 (523)
Q Consensus 463 ~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i 513 (523)
+.|+++++|+.++.+..+ ++||++|.|++++++ .+..+.+++.+
T Consensus 78 ------~~Ig~~~~Ig~~~~v~~~-~~ig~~~~ig~~~~v~~~~~i~~~~~~ 122 (153)
T cd04645 78 ------CTIGDNCLIGMGAIILDG-AVIGKGSIVAAGSLVPPGKVIPPGSLV 122 (153)
T ss_pred ------eEECCCCEECCCCEEcCC-CEECCCCEECCCCEECCCCEeCCCCEE
Confidence 355666666666666555 556777777777666 34444454444
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.7e-13 Score=120.61 Aligned_cols=108 Identities=21% Similarity=0.229 Sum_probs=52.5
Q ss_pred CCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEec-----eEECCCCEECCCcEEcCCCCCCC
Q psy17795 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVLN-----SIVGRNSKVGNWSRVEGTPCDPN 463 (523)
Q Consensus 393 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~~-----~iIg~~~~Ig~~~~i~~~~~~~~ 463 (523)
++++|++++.|.+++.||++|.|++++.|.. ++||++|.|+++|.|.. ++||+++.|++++.+.+
T Consensus 5 ~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~------ 78 (154)
T cd04650 5 PKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG------ 78 (154)
T ss_pred CCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEEC------
Confidence 3334444443434444444444444444433 24555555555555542 45555555555555533
Q ss_pred CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcE
Q psy17795 464 PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKE 512 (523)
Q Consensus 464 ~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~ 512 (523)
+.|+++++|+.++.+.++ ++||++++|++++.+ .+..+.++..
T Consensus 79 -----~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~vg~~~~v~~g~~i~~~~v 122 (154)
T cd04650 79 -----AKVGNYVIVGMGAILLNG-AKIGDHVIIGAGAVVTPGKEIPDYSL 122 (154)
T ss_pred -----cEECCCCEEcCCCEEeCC-CEECCCCEECCCCEECCCcEeCCCCE
Confidence 244555555555555444 455666666666655 3334444444
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=120.50 Aligned_cols=110 Identities=22% Similarity=0.206 Sum_probs=88.7
Q ss_pred CCceEecCcEECCCCEECCCCEEC---CCcEECCCCEECCCCEEee-----------eEECCCCEECCCCEEeceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKE-----------SIILQGASIGNHSLVLNSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~-----------s~Ig~~~~Ig~~~~I~~~iIg~~ 446 (523)
+++.+.+++.||+++.|++++.|. ++++||++|.|+++|.|.+ +.||+++.|+.++.|.+++||++
T Consensus 10 ~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~ 89 (164)
T cd04646 10 QESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNN 89 (164)
T ss_pred CCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCC
Confidence 567788899999999999999985 5689999999999999965 46889999999999999999999
Q ss_pred CEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcE
Q psy17795 447 SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELI 501 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~ 501 (523)
|.||.+|.|.+ .++|++++.||+++.|.++ +.|+++++++.+..
T Consensus 90 ~~Ig~~a~I~~----------gv~Ig~~~~IgagsvV~~~-~~i~~~~vi~g~~~ 133 (164)
T cd04646 90 NVFESKSFVGK----------NVIITDGCIIGAGCKLPSS-EILPENTVIYGADC 133 (164)
T ss_pred CEEeCCCEECC----------CCEECCCCEEeCCeEECCC-cEECCCeEEeCCce
Confidence 99999999976 3678888887777665555 33455555544443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.5e-13 Score=142.48 Aligned_cols=123 Identities=21% Similarity=0.317 Sum_probs=77.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcC--
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEG-- 457 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~-- 457 (523)
+++.|.+++.||+++.|++++.| .++.||++|.|++++.|.+++||++|.||++++|. +++|+++|.||+++.+.+
T Consensus 272 ~~~~i~~~~~ig~~~~I~~~~~i-~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ 350 (451)
T TIGR01173 272 PNVILEGKVKIGDDVVIGPGCVI-KNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNAR 350 (451)
T ss_pred CCeEEeCceEECCCCEECCCcEE-eeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcE
Confidence 35556666666666666666666 35666666666666666666666666665555554 344444444443332211
Q ss_pred ---------------CCCCC--------------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 458 ---------------TPCDP--------------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 458 ---------------~~~~~--------------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
+.++. ......++||++++||.++.|.++ +.||++|+|++|++|...
T Consensus 351 ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~g~~v~~~ 426 (451)
T TIGR01173 351 IGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAP-VKVGDGATIAAGSTVTKD 426 (451)
T ss_pred ECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECC-cEECCCCEEccCCEECcc
Confidence 00000 011235889999999999999999 677999999999999443
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=118.25 Aligned_cols=91 Identities=23% Similarity=0.357 Sum_probs=77.4
Q ss_pred CCceEecCcEECCCCEECCCCEECC---CcEECCCCEECCCCEE-----eeeEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGP---NVSIDDGAVIGPGVRI-----KESIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~---~~~Ig~~~~I~~~~~I-----~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+++.+.+++.|++++.|++++.|.+ ++.||++|.|+++|.| .+++|+++|.|++++.+.+++||++|.||.+
T Consensus 11 ~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~ 90 (155)
T cd04745 11 PTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMN 90 (155)
T ss_pred CCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCC
Confidence 5678888999999999999999865 5899999999999999 5599999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCC
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNG 481 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~ 481 (523)
+.|.+ .+.|++++.|+.++
T Consensus 91 ~~I~~----------g~~Ig~~~~Ig~~s 109 (155)
T cd04745 91 AVVMD----------GAVIGEESIVGAMA 109 (155)
T ss_pred CEEeC----------CCEECCCCEECCCC
Confidence 99965 24566665554443
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=126.94 Aligned_cols=94 Identities=7% Similarity=0.094 Sum_probs=61.3
Q ss_pred ECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-e
Q psy17795 426 ILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-L 503 (523)
Q Consensus 426 Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~ 503 (523)
|+++|.|+.+++|. ++.||++|.|+.++.|.+.... .....+.|+++|+||+++.|.+| ++||++|+|+++++| .
T Consensus 135 Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~--~~~~~viIgDnv~IGa~s~I~~G-v~IGdgavIgag~vV~~ 211 (272)
T PRK11830 135 VDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEP--LQANPVIIEDNCFIGARSEVVEG-VIVEEGSVLGMGVFLGQ 211 (272)
T ss_pred ECCCcEEccccEECCCCEECCCcEECCCccCCCCccc--cCcCCeEEcCCCEECCCCEEcCC-CEECCCCEEcCCCEEcC
Confidence 33444444444444 3466666666666666553211 12235788999999999888888 777999999999888 6
Q ss_pred CeEEcC---CcEeCCCCCCccc
Q psy17795 504 NSIVLP---YKELTRSFKNEIL 522 (523)
Q Consensus 504 ~~~v~~---~~~i~~~~~~~~i 522 (523)
+..|+| +.++...+|+..+
T Consensus 212 gt~I~~~~~g~v~~g~vp~~sv 233 (272)
T PRK11830 212 STKIYDRETGEVHYGRVPAGSV 233 (272)
T ss_pred CeEECcCCCCcEEeeecCCCcE
Confidence 777774 5566666665443
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=122.90 Aligned_cols=117 Identities=22% Similarity=0.376 Sum_probs=87.9
Q ss_pred CCceEecCcEECCCCEECCCCEECC---CcEECCCCEECCCCEEe-----eeEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGP---NVSIDDGAVIGPGVRIK-----ESIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~---~~~Ig~~~~I~~~~~I~-----~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+++.+.+++.|++++.|+++|+|.+ .++||++|.|+++|+|. +|+|+++|.|++++.|++|+|+++|.||.+
T Consensus 19 ~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~g 98 (192)
T TIGR02287 19 PTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMN 98 (192)
T ss_pred CCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCC
Confidence 5778888999999999999999963 68999999999999993 599999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCC
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSF 517 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~ 517 (523)
+.+.+ .+.|++++.+++++ +|..+..|.+++.+.+. |.+.++...
T Consensus 99 a~I~~----------g~~IG~~s~Vgags-------~V~~~~~ip~~~l~~G~---Pak~i~~~~ 143 (192)
T TIGR02287 99 AVVMD----------GAVIGENSIVAASA-------FVKAGAEMPAQYLVVGS---PAKVIRELS 143 (192)
T ss_pred cccCC----------CeEECCCCEEcCCC-------EECCCCEECCCeEEEcc---CCEEeccCC
Confidence 99865 24455554444333 22333344444444222 677766543
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-12 Score=113.69 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=94.1
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe---------ceEECCCCEEC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL---------NSIVGRNSKVG 450 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~---------~~iIg~~~~Ig 450 (523)
+++.+.++++|++++.|++++.|..++.||++|.|+.++.|+ ++.||++|.|++++.|. .++|++++.|+
T Consensus 6 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig 85 (139)
T cd03350 6 PGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIG 85 (139)
T ss_pred CCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEEC
Confidence 467788888888888888888888888888888888888885 48899999999999885 48999999999
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
++++|.+ .+.|++++.|+++++|.++ +.|+++ |+++++..
T Consensus 86 ~~a~I~~----------gv~Ig~~~~Ig~g~~V~~~-~~I~~~---~~~~~v~~ 125 (139)
T cd03350 86 ANCEVVE----------GVIVGKGAVLAAGVVLTQS-TPIYDR---ETGEIYYG 125 (139)
T ss_pred CCCEECC----------CCEECCCCEEcCCCEEcCC-eEeccc---CcccEEec
Confidence 9999965 4789999999999999999 677988 99998843
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=139.77 Aligned_cols=122 Identities=21% Similarity=0.350 Sum_probs=82.4
Q ss_pred CceEecCcEECCCCEECCCCEECC-----CcEECCCCEECCCCEEe-eeEECCCCEECCCCEEeceEECCCCEE------
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGP-----NVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKV------ 449 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~-----~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~~iIg~~~~I------ 449 (523)
++.|+++++|++++.|++++.|++ +++||++|.|++++.|. +++||++|.||++|.|.+++|++++.+
T Consensus 274 ~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i 353 (446)
T PRK14353 274 DVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYI 353 (446)
T ss_pred CCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEE
Confidence 444555555555555555555543 57788888888888886 688888888888888776666655433
Q ss_pred -----CCCcEEcCCCCC---CCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 450 -----GNWSRVEGTPCD---PNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 450 -----g~~~~i~~~~~~---~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
|++|.|+..... .......+.||++++||.++.|.++ +.||++++||++++|..
T Consensus 354 ~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~ig~~s~v~~ 415 (446)
T PRK14353 354 GDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP-VTIGDGAYIASGSVITE 415 (446)
T ss_pred cCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC-CEECCCCEECCCCEECc
Confidence 333333222110 0111235889999999999999999 67799999999999944
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-12 Score=126.56 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=90.7
Q ss_pred CCceEecCcEECCCCEECCCCEECCC---cEECCCCEECCCCEEe-----------eeEECCCCEECCCCEEeceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRIK-----------ESIILQGASIGNHSLVLNSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~-----------~s~Ig~~~~Ig~~~~I~~~iIg~~ 446 (523)
+++.+.+++.|++++.|+++++|.+. ++||++|.|+++|+|. +++||++|.||++|.|.+|+||++
T Consensus 63 p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~ 142 (269)
T PLN02296 63 PSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDE 142 (269)
T ss_pred CCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCC
Confidence 57788889999999999999999765 5999999999999995 489999999999999999999999
Q ss_pred CEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCC
Q psy17795 447 SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSF 517 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~ 517 (523)
|.||.+++|.. .++|++++.|++++. |..++.|++++++.+. |.+.+..-.
T Consensus 143 v~IG~ga~I~~----------gv~Ig~~a~IgagSv-------V~~~~~I~~~~~~~G~---PA~~ir~~~ 193 (269)
T PLN02296 143 AFVGMGATLLD----------GVVVEKHAMVAAGAL-------VRQNTRIPSGEVWAGN---PAKFLRKLT 193 (269)
T ss_pred cEECCCcEECC----------CeEECCCCEECCCCE-------EecCCEeCCCeEEecc---CcEEeCCCC
Confidence 99999999975 356666666665543 3444455555555332 444454433
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.7e-12 Score=119.68 Aligned_cols=138 Identities=17% Similarity=0.217 Sum_probs=91.8
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe--------------------eeEECCCCEECCCCEEe-
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK--------------------ESIILQGASIGNHSLVL- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~--------------------~s~Ig~~~~Ig~~~~I~- 439 (523)
+++.|.+++.|++++.|++++.|+.+++||++|.|+++++|+ .+.|++++.|++++.+.
T Consensus 30 ~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~ 109 (205)
T cd03352 30 PGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDVEIGANTTIDR 109 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEEECCCEEECCCCEEec
Confidence 345555666666666666666666667777777777777773 36778888888887774
Q ss_pred ----ceEECCCCEECCCcEEcCCC-CCC-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEE
Q psy17795 440 ----NSIVGRNSKVGNWSRVEGTP-CDP-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIV 507 (523)
Q Consensus 440 ----~~iIg~~~~Ig~~~~i~~~~-~~~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v 507 (523)
++.|++++.|++++.|.... ++. ....+.+.|+++++|+.++.+.++ +.||+++.|++++++.+. +
T Consensus 110 ~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~-~~ig~~~~i~~~s~v~~~-~ 187 (205)
T cd03352 110 GALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGH-LTIGDGVVIGAGSGVTSI-V 187 (205)
T ss_pred cccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCC-cEECCCCEEcCCCEEeeE-C
Confidence 35566666555555553211 111 112257889999999999999998 778999999999988743 4
Q ss_pred cCCcEeCCCCCCcc
Q psy17795 508 LPYKELTRSFKNEI 521 (523)
Q Consensus 508 ~~~~~i~~~~~~~~ 521 (523)
.++..+ .+.|+..
T Consensus 188 ~~~~~~-~G~pa~~ 200 (205)
T cd03352 188 PPGEYV-SGTPAQP 200 (205)
T ss_pred CCCCEE-EeecCch
Confidence 455544 4666543
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-12 Score=129.19 Aligned_cols=201 Identities=13% Similarity=0.115 Sum_probs=127.1
Q ss_pred cccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe
Q psy17795 90 VSCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 90 ~~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~ 169 (523)
+||.+.+|||||| .|+||.. ..||+|++++|+|||+|+++.|.+.+.+++|+||+++....+.+.+.. .+..
T Consensus 2 ~mm~v~aIILAAG--~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~---~~~~ 73 (378)
T PRK09382 2 LMSDISLVIVAAG--RSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP---EIKF 73 (378)
T ss_pred CCCcceEEEECCC--CCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc---cCCe
Confidence 5678899999999 9999964 689999999999999999999998744799999998754443333222 1111
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----c-chHH---HHHHHHhcCCcceE
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----I-RSDV---VILMHSLYSMAILV 239 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i-~~D~---l~~~h~~~~~~~~~ 239 (523)
+.++.... + ..++++ .+++. .+. +|+.. + -.+. +++..+ . ...
T Consensus 74 -v~~v~gG~--~-----------------r~~SV~~gL~~l~--~d~-VLVhdadrPfv~~e~I~~li~~~~--~--~~a 126 (378)
T PRK09382 74 -VTLVTGGA--T-----------------RQESVRNALEALD--SEY-VLIHDAARPFVPKELIDRLIEALD--K--ADC 126 (378)
T ss_pred -EEEeCCCc--h-----------------HHHHHHHHHHhcC--CCe-EEEeeccccCCCHHHHHHHHHHhh--c--CCe
Confidence 33332211 1 446676 55554 244 55544 1 1233 333332 2 456
Q ss_pred EEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCC
Q psy17795 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDT 319 (523)
Q Consensus 240 tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~ 319 (523)
++.+.++. ++..|+...+|. ..+..+ ++|+.+.... +.+.. +++++
T Consensus 127 ~i~~~pv~--Dtik~~~~tldR--~~l~~~-QTPQ~f~~~~---------------l~~a~---~~~~~----------- 172 (378)
T PRK09382 127 VLPALPVA--DTLKRANETVDR--EGLKLI-QTPQLSRTKT---------------LKAAA---DGRGD----------- 172 (378)
T ss_pred EEEEEEec--cCcEEeeeEcCc--ccEEEE-ECCCCCCHHH---------------HHHHH---hCCCC-----------
Confidence 67777763 556777655654 356555 7887643322 11111 11222
Q ss_pred CcccccchhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 320 DFNHIQLEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
+ +|..+.+...|. +..+..+..|..+.+|+|+..+...+.
T Consensus 173 ------~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~ 213 (378)
T PRK09382 173 ------F-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLS 213 (378)
T ss_pred ------c-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhc
Confidence 2 455666666664 888889999999999999988877543
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=116.14 Aligned_cols=96 Identities=24% Similarity=0.350 Sum_probs=84.0
Q ss_pred CCceEecCcEECCCCEECCCCEEC---CCcEECCCCEECCCCEEee-----eEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+++.+.+++.|++++.|+++++|+ +...||+++.|.++|+|.. +.||++|+||+++.|++|.|+++|.||-+
T Consensus 22 ~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmg 101 (176)
T COG0663 22 PSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMG 101 (176)
T ss_pred CCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecC
Confidence 688899999999999999999997 5689999999999999965 89999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
++|-+ .++||++|+||+++.|.++
T Consensus 102 A~vld----------ga~IG~~~iVgAgalV~~~ 125 (176)
T COG0663 102 ATVLD----------GAVIGDGSIVGAGALVTPG 125 (176)
T ss_pred ceEeC----------CcEECCCcEEccCCcccCC
Confidence 99976 2567777776666655444
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=136.91 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=77.8
Q ss_pred CEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCC
Q psy17795 395 ASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNP 474 (523)
Q Consensus 395 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~ 474 (523)
+.|++++.|.+++.|+++|.|++++.|+++.||+++.+++.+.+.+|.||++|.||+++.+.+.. ......++||++
T Consensus 324 ~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~---~~~~~~~~Igd~ 400 (456)
T PRK09451 324 CTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYD---GANKFKTIIGDD 400 (456)
T ss_pred cEecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEeccc---CcccCCCEECCC
Confidence 33333333333444444444444444555566666666666666677888888888887775421 112234889999
Q ss_pred CeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCC
Q psy17795 475 PLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKN 519 (523)
Q Consensus 475 ~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~ 519 (523)
++||.++.|.++ +.||++++|++|++|...+ .++..+..+.|.
T Consensus 401 ~~ig~~~~i~~~-~~ig~~~~i~~gs~v~~~v-~~~~~~~~~~~~ 443 (456)
T PRK09451 401 VFVGSDTQLVAP-VTVGKGATIGAGTTVTRDV-AENELVISRVPQ 443 (456)
T ss_pred cEECCCCEEeCC-cEECCCCEECCCCEEcccc-CCCCEEEeccCc
Confidence 999999999999 6679999999999996543 455555444443
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-12 Score=136.39 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=77.9
Q ss_pred CcEECCCCEECCCCEEeeeEECC----------CCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCC
Q psy17795 406 NVSIDDGAVIGPGVRIKESIILQ----------GASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPP 475 (523)
Q Consensus 406 ~~~Ig~~~~I~~~~~I~~s~Ig~----------~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~ 475 (523)
+++||++|.|++++.|.+|.||+ ++.||+.+.|.+|+||++|.||+++.+.+.. ...+..+.||+++
T Consensus 298 ~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~---~~~~~~~~ig~~~ 374 (430)
T PRK14359 298 NSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYD---GKKKHKTIIGKNV 374 (430)
T ss_pred CCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEcccc---CccCcCCEECCCe
Confidence 44555555555555555544444 4577777888899999999999999887632 1222357899999
Q ss_pred eecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCC
Q psy17795 476 LFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFK 518 (523)
Q Consensus 476 ~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~ 518 (523)
++|.++.|.++ +.||++++||+|++|.+. +.++..+..+.|
T Consensus 375 ~ig~~~~i~~~-~~ig~~~~i~~g~~v~~~-v~~~~~~~~~~~ 415 (430)
T PRK14359 375 FIGSDTQLVAP-VNIEDNVLIAAGSTVTKD-VPKGSLAISRAP 415 (430)
T ss_pred EEcCCCEEeCC-cEECCCCEECCCCEEccc-cCCCcEEEeccC
Confidence 99999999999 677999999999999544 345555544444
|
|
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-12 Score=122.71 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=68.1
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEE---------eceEECCCCEECC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLV---------LNSIVGRNSKVGN 451 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I---------~~~iIg~~~~Ig~ 451 (523)
++.+.++++|++++.|.++ .|..++.||++|.|+.+++|++ +.||++|.|+.++.| .+++||++|.||+
T Consensus 106 ~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa 184 (269)
T TIGR00965 106 GAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGA 184 (269)
T ss_pred CcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECC
Confidence 4444455555555555543 3445567777777777777754 777777777777776 3578999999999
Q ss_pred CcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCC
Q psy17795 452 WSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDG 493 (523)
Q Consensus 452 ~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~ 493 (523)
+|.|.+ .++|++++.||++++|.++ +.|++.
T Consensus 185 ~a~I~~----------GV~IG~gavIGaGavI~~~-~~I~~~ 215 (269)
T TIGR00965 185 RSEIVE----------GVIVEEGSVISMGVFIGQS-TKIYDR 215 (269)
T ss_pred CCEEcC----------CCEECCCCEEeCCCEECCC-CEEecc
Confidence 999965 3678888888777777776 444554
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.5e-12 Score=113.04 Aligned_cols=96 Identities=23% Similarity=0.266 Sum_probs=81.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCC---cEECCCCEECCCCEEee-----eEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+++.|.+++.||+++.|++++.|.+. ++||++|.|+++|.|.. ++||+++.|++++.+.+++||+++.|+.+
T Consensus 11 ~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~ 90 (154)
T cd04650 11 PTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMG 90 (154)
T ss_pred CCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCC
Confidence 56778888999999999999988765 79999999999999976 89999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
+.+.+ .+.|+++++++.++.+.++
T Consensus 91 ~~i~~----------~~~Ig~~~~vg~~~~v~~g 114 (154)
T cd04650 91 AILLN----------GAKIGDHVIIGAGAVVTPG 114 (154)
T ss_pred CEEeC----------CCEECCCCEECCCCEECCC
Confidence 99965 2567777766655544443
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-11 Score=115.97 Aligned_cols=209 Identities=15% Similarity=0.075 Sum_probs=124.3
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
+||+|+| .|+||. +|+|++++|+|||.|+++++.+. ++++|+|++.. +.+.+++.+ ++.++....
T Consensus 2 ~iIpA~g--~s~R~~------~K~L~~l~GkPli~~~le~~~~~-~~d~VvVvt~~--~~i~~~~~~----~g~~~v~~~ 66 (238)
T TIGR00466 2 VIIPARL--ASSRLP------GKPLEDIFGKPMIVHVAENANES-GADRCIVATDD--ESVAQTCQK----FGIEVCMTS 66 (238)
T ss_pred EEEecCC--CCCCCC------CCeecccCCcCHHHHHHHHHHhC-CCCeEEEEeCH--HHHHHHHHH----cCCEEEEeC
Confidence 7999999 999994 69999999999999999999986 79999998864 456666554 454432222
Q ss_pred cccccchhhhhcccccccccCCCchhHHH-Hhhcc-cCCcceEEEEc-----cchHH---HHHHHHhcCCcceEEEEEEe
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLH-WVQEAVYFTLE-----IRSDV---VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~-~~~d~~~Lvl~-----i~~D~---l~~~h~~~~~~~~~tv~~~~ 245 (523)
+....| +..... ...+. ...+. ++++. +--+. +++.+.... .++++++.+
T Consensus 67 ~~~~~G-----------------t~r~~~~~~~l~~~~~d~-Vli~~gD~Pli~~~~I~~li~~~~~~~--~~~a~~~~~ 126 (238)
T TIGR00466 67 KHHNSG-----------------TERLAEVVEKLALKDDER-IVNLQGDEPFIPKEIIRQVADNLATKN--VPMAALAVK 126 (238)
T ss_pred CCCCCh-----------------hHHHHHHHHHhCCCCCCE-EEEEcCCcCcCCHHHHHHHHHHHhcCC--CCEEEEeee
Confidence 323333 222222 22222 11233 55554 22222 555554444 566777766
Q ss_pred eCCCCC---cceeEEEEcCCCCcEEEEeecCC-----------Ccc--cceeeeeEEEeeHHHHHHHHHhhccccccccc
Q psy17795 246 ATRQQS---VYYGCIVRKQQTSEISHYVEKPS-----------TFV--STLVNCGVYLFSLDIFQNIAAVFQSKQDEFYN 309 (523)
Q Consensus 246 ~~~~~~---~~~g~v~~d~~~~~V~~~~ekp~-----------~~~--~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~ 309 (523)
...... .+...++.|.+ |+++-|...+. .+. ..+...|+|.|+++.|..+....... ++
T Consensus 127 ~~d~~~~~~p~~vk~v~~~~-g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~---le- 201 (238)
T TIGR00466 127 IHDAEEAFNPNAVKVVLDSQ-GYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCV---LE- 201 (238)
T ss_pred cCCHHHccCCCceEEEeCCC-CeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCc---cc-
Confidence 532110 11334444655 77766665421 111 14678999999999998877643221 10
Q ss_pred ccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchh-Hhhhccchhh
Q psy17795 310 GNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKW-WSQLKSAGSA 358 (523)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~-w~dIgt~~dy 358 (523)
...++ |-+..|...-++.+...+.. -..++|++|+
T Consensus 202 ------------~~e~l--eqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 202 ------------EIEKL--EQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ------------ccchh--HHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 11122 55555554445877776554 3489999886
|
|
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-11 Score=116.88 Aligned_cols=211 Identities=13% Similarity=0.120 Sum_probs=124.7
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh-HHHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS-ADLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~-~~i~~~l~~~~~~~~~ 169 (523)
||.+.+|||||| .|+||+. ..||+|++++|+|||+|+++++.+...+++|+|++++.. +.+.+.+.. .. .
T Consensus 1 ~~~~~~iILAaG--~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~ 71 (227)
T PRK00155 1 MMMVYAIIPAAG--KGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-P 71 (227)
T ss_pred CCceEEEEEcCc--cccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-C
Confidence 467789999999 9999964 579999999999999999999987645899999998754 344333321 11 1
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc-----cchHH---HHHHHHhcCCcceE
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE-----IRSDV---VILMHSLYSMAILV 239 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~-----i~~D~---l~~~h~~~~~~~~~ 239 (523)
.+.++.... + .+++++ .+++.+ .+. +|++. +-.+. +++.+...+ .
T Consensus 72 ~~~~~~~~~--~-----------------~~~sv~~~l~~~~~-~d~-vlv~~~D~P~i~~~~i~~li~~~~~~~----~ 126 (227)
T PRK00155 72 KVTVVAGGA--E-----------------RQDSVLNGLQALPD-DDW-VLVHDAARPFLTPDDIDRLIEAAEETG----A 126 (227)
T ss_pred ceEEeCCcc--h-----------------HHHHHHHHHHhCCC-CCE-EEEccCccCCCCHHHHHHHHHHHhhCC----C
Confidence 233332211 1 456776 555532 345 66654 22233 555554432 2
Q ss_pred EEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCC
Q psy17795 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDT 319 (523)
Q Consensus 240 tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~ 319 (523)
++++.+.. + .+..+ +++ |.+.++.+. ....... +.|.|+.+.+..+.+... .+++|+
T Consensus 127 ~~~~~~~~--~--~~~~v--~~~-g~~~~~~~r---~~~~~~~-~p~~f~~~~l~~~~~~~~--~~~~~~---------- 183 (227)
T PRK00155 127 AILAVPVK--D--TIKRS--DDG-GGIVDTPDR---SGLWAAQ-TPQGFRIELLREALARAL--AEGKTI---------- 183 (227)
T ss_pred EEEEEecc--c--cEEEE--cCC-CceeecCCh---HHheeee-CCccchHHHHHHHHHHHH--hcCCCc----------
Confidence 33333432 1 12322 443 666665432 1122233 478899887665543221 234444
Q ss_pred CcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 320 DFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
+|....+.+.+ .+..+..+..+.+|+|++|+..+...+.
T Consensus 184 --------~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 184 --------TDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred --------CcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 23333334444 3777766666779999999988866543
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=113.76 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=93.8
Q ss_pred CCceEecCcEECCCCEECCCCEECC----CcEECCCCEECCCCEEe-----eeEECCCCEECCCCEEec-eEECCCCEEC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGP----NVSIDDGAVIGPGVRIK-----ESIILQGASIGNHSLVLN-SIVGRNSKVG 450 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~----~~~Ig~~~~I~~~~~I~-----~s~Ig~~~~Ig~~~~I~~-~iIg~~~~Ig 450 (523)
+++.+.+++.|+++++|++++.|+. ++.||++|.|++++.|. .+.||++|.|++++.|.+ ++||++|.||
T Consensus 13 ~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig 92 (167)
T cd00710 13 PTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIG 92 (167)
T ss_pred CCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEEC
Confidence 5777888888999999999998865 47999999999999995 488999999999999985 9999999999
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
.+|.|.+ +.|++++.||+++.|. + +.|++++.+++++++.
T Consensus 93 ~~~~I~~-----------~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~v~ 132 (167)
T cd00710 93 FRSVVFN-----------AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAVIT 132 (167)
T ss_pred CCCEEEC-----------CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCEEc
Confidence 9999964 5789999999988773 4 5668888888887774
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.3e-12 Score=101.78 Aligned_cols=79 Identities=19% Similarity=0.384 Sum_probs=70.9
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCcee
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAK 470 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~ 470 (523)
|++++.|++++.|. ++.||++|.|++++.|.+++|++++.|++++.|.+++|++++.|++++.+.+
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~------------- 67 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKD------------- 67 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEcc-------------
Confidence 67888888888885 7999999999999999999999999999999999999999999999999976
Q ss_pred cCCCCeecCCCeecCCcEEeCCCCEECCCc
Q psy17795 471 MDNPPLFNSNGKLNPSITILGDGVTVPGEL 500 (523)
Q Consensus 471 I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~ 500 (523)
++||+++.|++++
T Consensus 68 -----------------~ii~~~~~i~~~~ 80 (81)
T cd04652 68 -----------------CLVGSGYRVEAGT 80 (81)
T ss_pred -----------------CEECCCcEeCCCC
Confidence 7778888887764
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.5e-12 Score=100.32 Aligned_cols=67 Identities=46% Similarity=0.775 Sum_probs=62.6
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
|++++.|++++.|+++++|+++|.|++++.|.+++|++++.|++++.|.++++++++.|++++.+.+
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~ 68 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLEN 68 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEec
Confidence 5788888888889899999999999999999999999999999999999999999999999999965
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=120.14 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=69.8
Q ss_pred CCceEecCcEECCCCEECCCCEECCC---cEECCCCEECCCCEEe-----------eeEECCCCEECCCCEEeceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRIK-----------ESIILQGASIGNHSLVLNSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~-----------~s~Ig~~~~Ig~~~~I~~~iIg~~ 446 (523)
+++.+.++++|++++.|+++++|.++ ++||++|.|+++|+|+ +++||++|.||++|.|.+|+|+++
T Consensus 70 p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~ 149 (246)
T PLN02472 70 PNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPE 149 (246)
T ss_pred CCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCC
Confidence 67888899999999999999998654 8999999999999994 489999999999999999999999
Q ss_pred CEECCCcEEcC
Q psy17795 447 SKVGNWSRVEG 457 (523)
Q Consensus 447 ~~Ig~~~~i~~ 457 (523)
|.||.+|+|..
T Consensus 150 v~IG~~svI~~ 160 (246)
T PLN02472 150 CIIGQHSILME 160 (246)
T ss_pred CEECCCCEECC
Confidence 99999999865
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=132.64 Aligned_cols=131 Identities=14% Similarity=0.224 Sum_probs=92.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCC-------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNW------- 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~------- 452 (523)
+++.|.+++.|++++.|+++++| .+++||++|+|+++++|.+++|+++|.||++++|. ++.|++++.||++
T Consensus 279 ~~~~I~~~~~Ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ 357 (459)
T PRK14355 279 PGVCISGDTRIGEGCTIEQGVVI-KGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIV 357 (459)
T ss_pred CCcEEeCCCEECCCCEECCCCEE-eCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCE
Confidence 45667777777788888888877 46888999999999988888888888888777775 4555554444433
Q ss_pred ---------------------cEEcCCCCCC---CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEc
Q psy17795 453 ---------------------SRVEGTPCDP---NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVL 508 (523)
Q Consensus 453 ---------------------~~i~~~~~~~---~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~ 508 (523)
|.|+...+.. ......+.||+++++|.++.|.++ +.||++++|+++++|... |.
T Consensus 358 ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~-~~ig~~~~i~a~s~v~~~-v~ 435 (459)
T PRK14355 358 MGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAP-VTVGRNSLIAAGTTVTKD-VP 435 (459)
T ss_pred ECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCC-cEECCCCEECCCCEEccc-CC
Confidence 2332221111 112345789999999999999999 777999999999999533 34
Q ss_pred CCcEeC
Q psy17795 509 PYKELT 514 (523)
Q Consensus 509 ~~~~i~ 514 (523)
++..+.
T Consensus 436 ~~~~~~ 441 (459)
T PRK14355 436 PDSLAI 441 (459)
T ss_pred CCcEEE
Confidence 444443
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.2e-12 Score=107.89 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=78.8
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCce
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFA 469 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v 469 (523)
|++++.|++++.|+++++||++|.|++++.|+ +++||++|.|++++.+.++.+.... +..++.+. .+
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~-~~~~~~~~-----------~~ 68 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSK-IYRKWELK-----------GT 68 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccc-cccccccC-----------Cc
Confidence 35667777777777777777777777777774 4777788888877777665443332 33334443 36
Q ss_pred ecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCc
Q psy17795 470 KMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 470 ~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~ 520 (523)
.|+++++|+.++.+.++ ++||+++.|++++++... +.++..+ .+.|++
T Consensus 69 ~Ig~~~~Ig~~~~v~~~-~~ig~~~~i~~~~~v~~~-i~~~~~~-~G~pa~ 116 (119)
T cd03358 69 TVKRGASIGANATILPG-VTIGEYALVGAGAVVTKD-VPPYALV-VGNPAR 116 (119)
T ss_pred EECCCcEECcCCEEeCC-cEECCCCEEccCCEEeCc-CCCCeEE-ecCcce
Confidence 78888888888888888 778999999999988654 4444333 455554
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.4e-12 Score=134.54 Aligned_cols=120 Identities=19% Similarity=0.307 Sum_probs=73.2
Q ss_pred eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcE--------
Q psy17795 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSR-------- 454 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~-------- 454 (523)
.+.+++.|++++.|++++.| .+++||++|.|+++|.|.+++||++|.||++++|. +++||++|.||.++.
T Consensus 283 ~i~~~~~ig~~~~I~~~~~i-~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~ 361 (456)
T PRK14356 283 EIYGASRIARGAVIHSHCWL-RDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGK 361 (456)
T ss_pred EEeCceEECCCCEECCCeEE-EeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecC
Confidence 34445566666666666655 34556666666666655555555555555555554 444444444433322
Q ss_pred --------------------EcCCCCCCC---CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 455 --------------------VEGTPCDPN---PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 455 --------------------i~~~~~~~~---~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
|+...+..+ .....+.||+++++|.++.+.++ +.||++++|+++++|...
T Consensus 362 ~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~-~~ig~~~~i~~~~~v~~~ 434 (456)
T PRK14356 362 GAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP-VTIGDGALVGAGSVITKD 434 (456)
T ss_pred CcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC-cEECCCCEEcCCCEEecc
Confidence 111111001 11245899999999999999999 778999999999999543
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=111.27 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=81.8
Q ss_pred CCceEecCcEECCCCEECCCCEECC---CcEECCCCEECCCCEEee-----eEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGP---NVSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~---~~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+.+.|.+++.|++++.|++++.|.+ +++||++|.|+++|.|.. ++||++|.|+.+|.|.+++|++++.|+++
T Consensus 10 ~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~ 89 (153)
T cd04645 10 PNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMG 89 (153)
T ss_pred CCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCC
Confidence 5778888899999999999998865 469999999999999977 59999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
+.+.+ .++|+++++++.++.+.++
T Consensus 90 ~~v~~----------~~~ig~~~~ig~~~~v~~~ 113 (153)
T cd04645 90 AIILD----------GAVIGKGSIVAAGSLVPPG 113 (153)
T ss_pred CEEcC----------CCEECCCCEECCCCEECCC
Confidence 99975 3567777777666544443
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-11 Score=115.52 Aligned_cols=202 Identities=13% Similarity=0.155 Sum_probs=123.4
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh-HHHHHHHHhhhhccCeeEEEE
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS-ADLQKFVLDMVQEYKINIRYL 174 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~ 174 (523)
+|||||| .|+||+. ..||+|++++|+|||+|+++.+.+..++++++|++++.. +.+.+++.. .. .+.++
T Consensus 2 aiIlAaG--~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~~--~~~~~ 71 (217)
T TIGR00453 2 AVIPAAG--RGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---RA--VPKIV 71 (217)
T ss_pred EEEEcCc--ccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---CC--cEEEe
Confidence 7999999 9999985 579999999999999999999998547999999998743 445444432 11 12333
Q ss_pred ecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc-----cchHH---HHHHHHhcCCcceEEEEEE
Q psy17795 175 QEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE-----IRSDV---VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~-----i~~D~---l~~~h~~~~~~~~~tv~~~ 244 (523)
.... + ..++++ ..++. ..+. +|++. +-.+. +++.+.+. +.++++.
T Consensus 72 ~~~~--~-----------------~~~sl~~~l~~~~-~~d~-vlv~~~D~P~i~~~~i~~li~~~~~~----~~~~~~~ 126 (217)
T TIGR00453 72 AGGD--T-----------------RQDSVRNGLKALK-DAEW-VLVHDAARPFVPKELLDRLLEALRKA----GAAILAL 126 (217)
T ss_pred CCCc--h-----------------HHHHHHHHHHhCC-CCCE-EEEccCccCCCCHHHHHHHHHHHhhC----CcEEEeE
Confidence 2211 1 235565 44442 2345 66655 22233 44444332 2334444
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccc
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 324 (523)
+. ..+...+|++ |.+..+.++. ....+.+ .|.|+...+..+..... ..++|+
T Consensus 127 ~~------~~~v~~~~~~-g~~~~~~~r~---~~~~~~~-p~~f~~~~l~~~~~~~~--~~~~~~--------------- 178 (217)
T TIGR00453 127 PV------ADTLKRVEAD-GFIVETVDRE---GLWAAQT-PQAFRTELLKKALARAK--EEGFEI--------------- 178 (217)
T ss_pred ec------cceEEEEcCC-CceeecCChH---HeEEEeC-CCcccHHHHHHHHHHHH--hcCCCC---------------
Confidence 43 2344455654 7788777642 2234444 68899887765543221 124443
Q ss_pred cchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccH
Q psy17795 325 QLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANR 363 (523)
Q Consensus 325 ~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~ 363 (523)
+|....+.+.| ++..+..+....+|++++|+-.+..
T Consensus 179 ---~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 179 ---TDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred ---CcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence 34444444445 3777777666679999999876643
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-12 Score=127.43 Aligned_cols=95 Identities=23% Similarity=0.424 Sum_probs=67.7
Q ss_pred CEECCCcEECCCCEECCCCEE-eeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecC
Q psy17795 401 AIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNS 479 (523)
Q Consensus 401 ~~I~~~~~Ig~~~~I~~~~~I-~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~ 479 (523)
..|+..+.||++|+|.+++.| +++.||++|.||++|.|.+|.|++++.|.++++|.++ .|++++.||.
T Consensus 263 ~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s-----------~vg~~~~VGP 331 (460)
T COG1207 263 TYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGS-----------TVGEGATVGP 331 (460)
T ss_pred EEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeecc-----------EecCCcccCC
Confidence 346677788888888888888 6689999999999999999999999999998998775 3444455555
Q ss_pred CCeecCCcEEeCCCCEECCCcEEeCeEE
Q psy17795 480 NGKLNPSITILGDGVTVPGELIVLNSIV 507 (523)
Q Consensus 480 ~~~i~~g~~iIG~~~~Ig~~~~i~~~~v 507 (523)
.+.+++| +.|++++.||..+-+.++.|
T Consensus 332 fA~LRPg-~~L~~~~hIGNFVEvK~a~i 358 (460)
T COG1207 332 FARLRPG-AVLGADVHIGNFVEVKKATI 358 (460)
T ss_pred ccccCCc-CcccCCCeEeeeEEEecccc
Confidence 5555555 44455444444444433333
|
|
| >KOG1462|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-12 Score=126.33 Aligned_cols=95 Identities=19% Similarity=0.335 Sum_probs=83.3
Q ss_pred ceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCC
Q psy17795 383 CKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDP 462 (523)
Q Consensus 383 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~ 462 (523)
+.++..+.|++++.|++++.| ..++||.+|.||+.++|.+|+|++|++||++|.|++||||.++.||++|.+.+
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~n----- 402 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKN----- 402 (433)
T ss_pred eccchhhccCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeee-----
Confidence 445667888999999988888 88999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEc
Q psy17795 463 NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVL 508 (523)
Q Consensus 463 ~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~ 508 (523)
|+||.|=+|.+..+..+.++.
T Consensus 403 -------------------------C~Ig~~yvVeak~~~~~ev~~ 423 (433)
T KOG1462|consen 403 -------------------------CIIGPGYVVEAKGKHGGEVLV 423 (433)
T ss_pred -------------------------eEecCCcEEcccccccccEee
Confidence 777777777777666665544
|
|
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=98.30 Aligned_cols=67 Identities=34% Similarity=0.560 Sum_probs=59.4
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+|++++.|++++.|.+ ++||++|.|++++.|.+++|+++|.|++++.|.+++|++++.|++++.+.+
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~ 67 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVN 67 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcC
Confidence 3677888888888865 899999999999999999999999999999999999999999999988865
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=115.42 Aligned_cols=72 Identities=11% Similarity=0.197 Sum_probs=41.9
Q ss_pred CCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeE
Q psy17795 428 QGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSI 506 (523)
Q Consensus 428 ~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~ 506 (523)
++|.|++++.|. ++.||+++.|+.++.+.+ .+.|+++++++.++.+.++ +.||++|+|++++++.+.
T Consensus 122 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----------~~~ig~~~~ig~~~~v~~~-~~i~~~~~i~~~~~v~~~- 189 (201)
T TIGR03570 122 DNVIINTGAIVEHDCVIGDYVHIAPGVTLSG----------GVVIGEGVFIGAGATIIQG-VTIGAGAIVGAGAVVTKD- 189 (201)
T ss_pred CCcEECCCCEEcCCCEECCCCEECCCCEEeC----------CcEECCCCEECCCCEEeCC-CEECCCCEECCCCEECCc-
Confidence 333333333333 345555555555555543 2455666666666666666 777888888888888554
Q ss_pred EcCCc
Q psy17795 507 VLPYK 511 (523)
Q Consensus 507 v~~~~ 511 (523)
+.++.
T Consensus 190 ~~~~~ 194 (201)
T TIGR03570 190 IPDGG 194 (201)
T ss_pred CCCCC
Confidence 33443
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >KOG1461|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-12 Score=132.45 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=70.1
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
++.++.++.||.++.|+.++.| .|++||+||.||++++|.+|.||+||+||+||.|.+|+|+++|.|+++|.+..
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~ 401 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKP 401 (673)
T ss_pred hccccceEEecccccccCCCee-ecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCC
Confidence 5677788888888899988888 89999999999999999999999999999999999999999999999999954
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=114.49 Aligned_cols=93 Identities=19% Similarity=0.326 Sum_probs=76.7
Q ss_pred CCceEecCcEECCCCEECCCCEECCC---cEECCCCEECCCCEEee-----eEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+++.+.+++.||+++.|+++++|.++ ++|+++|.|+++|+|+. ++|++++.||+++.|.+++||++|.||.+
T Consensus 21 ~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~g 100 (196)
T PRK13627 21 PSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMN 100 (196)
T ss_pred CCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcC
Confidence 57777888889999999999988653 68899999999999854 79999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCee
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i 483 (523)
+++.+ .++|++++.+++++.|
T Consensus 101 a~V~~----------g~~IG~~s~Vgags~V 121 (196)
T PRK13627 101 SVIMD----------GAVIGEESIVAAMSFV 121 (196)
T ss_pred CccCC----------CcEECCCCEEcCCCEE
Confidence 99965 2556666666555533
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=131.51 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=45.4
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
+++||++|.||+++.+.+.. ......+.||++++||.++.+.++ +.||++++|++++++..
T Consensus 374 ~~~ig~~~~ig~~~~i~~~~---~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~i~~gs~v~~ 434 (481)
T PRK14358 374 DVTIGAETNVGAGTIVANFD---GVNKHQSKVGAGVFIGSNTTLIAP-RVVGDAAFIAAGSAVHD 434 (481)
T ss_pred CeEEcCCceEcCCEEEeCCC---CccCCCCEECCCeEEcCCCEEcCC-cEECCCCEECCCCEEec
Confidence 45566666666666665421 112345789999999999999999 67899999999999843
|
|
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.30 E-value=8e-11 Score=113.14 Aligned_cols=204 Identities=14% Similarity=0.149 Sum_probs=123.0
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYL 174 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 174 (523)
.+|||||| .|+||++ ..||+|++++|+|||+|+++++.+...+++|+|++++........+... .....+.++
T Consensus 2 ~~vILAaG--~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~--~~~~~~~~~ 74 (218)
T cd02516 2 AAIILAAG--SGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKY--GLSKVVKIV 74 (218)
T ss_pred EEEEECCc--ccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhc--ccCCCeEEE
Confidence 38999999 9999986 4799999999999999999999986348999999987554444433211 112234344
Q ss_pred ecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc-----cchHH---HHHHHHhcCCcceEEEEE
Q psy17795 175 QEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE-----IRSDV---VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~-----i~~D~---l~~~h~~~~~~~~~tv~~ 243 (523)
.+.. + ..++++ .+++. ...+. +|++. +-.+. +++.+...+ ..+..
T Consensus 75 ~~~~--~-----------------~~~si~~al~~~~~~~~~~-vlv~~~D~P~i~~~~i~~li~~~~~~~----~~~~~ 130 (218)
T cd02516 75 EGGA--T-----------------RQDSVLNGLKALPDADPDI-VLIHDAARPFVSPELIDRLIDALKEYG----AAIPA 130 (218)
T ss_pred CCch--H-----------------HHHHHHHHHHhcccCCCCE-EEEccCcCCCCCHHHHHHHHHHHhhCC----cEEEE
Confidence 3321 2 345666 55553 22344 66654 11222 555554332 23333
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccc
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNH 323 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 323 (523)
.+.. .+....|++ |.+.++.+. .....+.++ ++|+.+.+..+....... ++|+
T Consensus 131 ~~~~------~~~~~~~~~-g~~~~~~~r---~~~~~~~~P-~~f~~~~~~~~~~~~~~~--~~~~-------------- 183 (218)
T cd02516 131 VPVT------DTIKRVDDD-GVVVETLDR---EKLWAAQTP-QAFRLDLLLKAHRQASEE--GEEF-------------- 183 (218)
T ss_pred Eecc------ccEEEecCC-CceeecCCh---HHhhhhcCC-CcccHHHHHHHHHHHHhc--CCCc--------------
Confidence 3331 112234555 888888764 234566777 899998877665432221 4443
Q ss_pred ccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhh
Q psy17795 324 IQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIY 360 (523)
Q Consensus 324 ~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~ 360 (523)
+|....+.+.+ ++..+..+..-.+|+|++|+..
T Consensus 184 ----td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 184 ----TDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred ----CcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 34444444444 4666665554459999999743
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=110.28 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=47.4
Q ss_pred CcEECCCCEECCCCEECCC---cEECCCCEECCCCEEee-------------eEECCCCEECCCCEEeceEECCCCEECC
Q psy17795 388 DVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRIKE-------------SIILQGASIGNHSLVLNSIVGRNSKVGN 451 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~~-------------s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~ 451 (523)
++.+++++.|++++.|.++ ++||++|.|+++|.|.. ++||+++.|++++.+.++.|++++.||+
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~ 100 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGK 100 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECC
Confidence 5666666777777666543 57777777777777753 3577777777777777777777777766
Q ss_pred CcEEcC
Q psy17795 452 WSRVEG 457 (523)
Q Consensus 452 ~~~i~~ 457 (523)
++.|+.
T Consensus 101 ~~~Ig~ 106 (161)
T cd03359 101 NCVIGR 106 (161)
T ss_pred CCEEcC
Confidence 666643
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=130.98 Aligned_cols=94 Identities=20% Similarity=0.257 Sum_probs=58.6
Q ss_pred cEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 407 VSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 407 ~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
+.||++|.|++++.|.+++|++++.|++++.+.+++||++|.||+++.+.+.. ......+.||++++||.++.|.++
T Consensus 332 ~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~---~~~~~~~~Ig~~~~iG~~~~i~~~ 408 (450)
T PRK14360 332 AQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYD---GVKKHRTVIGDRSKTGANSVLVAP 408 (450)
T ss_pred CEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceecccc---ccccCCcEeCCCeEeCCCCEEeCC
Confidence 33333333333333333444444444444444455566666666666654311 112346899999999999999999
Q ss_pred cEEeCCCCEECCCcEEeC
Q psy17795 487 ITILGDGVTVPGELIVLN 504 (523)
Q Consensus 487 ~~iIG~~~~Ig~~~~i~~ 504 (523)
+.||++++|+++++|.+
T Consensus 409 -~~ig~~~~v~~~~~v~~ 425 (450)
T PRK14360 409 -ITLGEDVTVAAGSTITK 425 (450)
T ss_pred -cEECCCCEECCCCEECc
Confidence 77899999999999954
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-11 Score=97.46 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=71.7
Q ss_pred ECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcE
Q psy17795 409 IDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSIT 488 (523)
Q Consensus 409 Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~ 488 (523)
||+++.|++++.|.++.|+++|.|++++.|.+++|++++.|++++.|.+ +
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~------------------------------s 51 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLEN------------------------------C 51 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEec------------------------------c
Confidence 6888888888888889999999999999999999999999999999976 7
Q ss_pred EeCCCCEECCCcEEeCeEEcCCcEeCCCC
Q psy17795 489 ILGDGVTVPGELIVLNSIVLPYKELTRSF 517 (523)
Q Consensus 489 iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~ 517 (523)
+|++++.|++++.+.+++++++..|..+.
T Consensus 52 vi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 52 IIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred EEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 88999999999999999999999988764
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-11 Score=129.69 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=54.8
Q ss_pred eEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 424 SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 424 s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
++|++++.|++.+.+.+++||++|.||+++.+.+.. ......+.||++++||.++.|.++ +.||++++||+|++|.
T Consensus 358 ~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~---~~~~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v~ 433 (482)
T PRK14352 358 ATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYD---GVNKHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVIR 433 (482)
T ss_pred cEECCCcEEccCceecccEECCCcEECCCcEEeccc---cccCCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEEc
Confidence 344444555444455566777777777777765421 112346889999999999999999 6779999999999994
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.8e-11 Score=103.68 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=31.0
Q ss_pred CceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEc
Q psy17795 467 AFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVL 508 (523)
Q Consensus 467 ~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~ 508 (523)
..+.||++++||.++.| + +.||++|+||+|++| .+..|.
T Consensus 72 ~pV~IG~~~~IG~ga~I--g-v~IG~~~vIGaGsvV~k~t~i~ 111 (147)
T cd04649 72 NVISIGKRCLLGANSGI--G-ISLGDNCIVEAGLYVTAGTKVT 111 (147)
T ss_pred cCEEECCCCEECCCCEE--e-EEECCCCEECCCCEEeCCeEEE
Confidence 34888888999989888 5 778999999999988 454443
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-11 Score=128.58 Aligned_cols=94 Identities=20% Similarity=0.376 Sum_probs=57.5
Q ss_pred CCCCEECCCCEEee-eEECCCCEECCCCEEeceEECCCC-----------EECCCcEEcCCCCCC---CCCCCceecCCC
Q psy17795 410 DDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNS-----------KVGNWSRVEGTPCDP---NPNKAFAKMDNP 474 (523)
Q Consensus 410 g~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~~iIg~~~-----------~Ig~~~~i~~~~~~~---~~~~~~v~I~~~ 474 (523)
+++|.|++++.|+. ++||++|.||+++.+.+++||+++ .||++|.|+...... ......++|+++
T Consensus 310 ~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~ 389 (448)
T PRK14357 310 EDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDG 389 (448)
T ss_pred eCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCC
Confidence 33344444444532 566666666666555444444332 334444443322111 112245899999
Q ss_pred CeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 475 PLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 475 ~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
++||.++.|.+| +.||+++.||+|++|..
T Consensus 390 ~~ig~~~~i~~g-v~Ig~~~~i~ag~~v~~ 418 (448)
T PRK14357 390 AFIGSNSSLVAP-VRIGKGALIGAGSVITE 418 (448)
T ss_pred CEECCCCEEeCC-cEECCCCEEcCCCEECC
Confidence 999999999999 67799999999999943
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.3e-11 Score=110.01 Aligned_cols=53 Identities=9% Similarity=0.234 Sum_probs=32.1
Q ss_pred eEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 441 SIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 441 ~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
+.||++|.|+.++.+.+ .+.|+++++||.++.+.++ ++||+++.|+++++|..
T Consensus 133 ~~ig~~~~i~~~~~i~~----------~~~ig~~~~ig~~~~v~~~-~~ig~~~~v~~~~~v~~ 185 (197)
T cd03360 133 CVIGDFVHIAPGVVLSG----------GVTIGEGAFIGAGATIIQG-VTIGAGAIIGAGAVVTK 185 (197)
T ss_pred CEECCCCEECCCCEEcC----------CcEECCCCEECCCCEEcCC-CEECCCCEECCCCEEcC
Confidence 34445555555555533 2445555566666666666 66788888888888744
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.7e-11 Score=114.77 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCceEecCcEECCCCEECCCCEEC-----CCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe---------ceEECC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVG-----PNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL---------NSIVGR 445 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~-----~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~---------~~iIg~ 445 (523)
+++.+.++++|++++.|++++.|. .+++||++|.|+.++.|++ +.||++|.|+.++.|. .++|++
T Consensus 102 ~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgD 181 (272)
T PRK11830 102 AGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIED 181 (272)
T ss_pred CCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcC
Confidence 456677777777777777777765 3455666666666666654 5677777777777664 378888
Q ss_pred CCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCC
Q psy17795 446 NSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDG 493 (523)
Q Consensus 446 ~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~ 493 (523)
+|.||.+|.|.. .+.||+++.|+.++.|.++ +.|++.
T Consensus 182 nv~IGa~s~I~~----------Gv~IGdgavIgag~vV~~g-t~I~~~ 218 (272)
T PRK11830 182 NCFIGARSEVVE----------GVIVEEGSVLGMGVFLGQS-TKIYDR 218 (272)
T ss_pred CCEECCCCEEcC----------CCEECCCCEEcCCCEEcCC-eEECcC
Confidence 888888888854 3677777777777766666 555654
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.3e-11 Score=110.71 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=60.2
Q ss_pred EECCCCEECCCCEEC--CCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCC-----
Q psy17795 390 YIHSSASVHPTAIVG--PNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDP----- 462 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~----- 462 (523)
.||+++.|++++.|. .++.||++|.|++++.|.+ .+ .++||++|.|++++.|....+..
T Consensus 53 ~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~---~~-----------~v~IG~~~~I~~~~~I~~~~h~~~~~~~ 118 (182)
T PRK10502 53 KIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN---LG-----------EITIGAHCVISQKSYLCTGSHDYSDPHF 118 (182)
T ss_pred ccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc---cC-----------ceEECCCcEECCCeEEECCCCCCcCCCc
Confidence 344444444444442 2466666666666666642 01 23344444444444443222211
Q ss_pred CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 463 NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 463 ~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
......+.||++++||++++|.+| +.||++|+|++++++..
T Consensus 119 ~~~~~~i~Igd~~~Ig~~a~I~~G-v~Ig~~~vIga~svV~~ 159 (182)
T PRK10502 119 DLNTAPIVIGEGCWLAADVFVAPG-VTIGSGAVVGARSSVFK 159 (182)
T ss_pred ccccCCEEEcCCcEEcCCCEEcCC-CEECCCCEECCCCEEec
Confidence 112256889999999999999999 67799999999999843
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.4e-11 Score=114.53 Aligned_cols=113 Identities=14% Similarity=0.229 Sum_probs=88.9
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEec---------eEECCCCEEC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLN---------SIVGRNSKVG 450 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~---------~iIg~~~~Ig 450 (523)
+++.+.+++.|++++.|++++.|+++++||++|.|++++.|+ +++||++|.||.++.|.+ ++||++|.||
T Consensus 91 ~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG 170 (231)
T TIGR03532 91 PGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIG 170 (231)
T ss_pred CCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEEC
Confidence 467888999999999999999999999999999999999995 799999999999999974 8899999999
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCC
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTR 515 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~ 515 (523)
.++.|.. .++|+++++|+++++|.. .|++++++.+. |.+.|.+
T Consensus 171 ~gsvI~~----------g~~Ig~~~~IgagsvV~~---------di~~~~vv~G~---PA~~i~~ 213 (231)
T TIGR03532 171 ANAVILE----------GVRVGKGAVVAAGAIVTE---------DVPPNTVVAGV---PAKVIKQ 213 (231)
T ss_pred CCCEEcC----------CCEECCCCEECCCCEEcc---------ccCCCcEEEec---CCEEecc
Confidence 9988864 256666666666654332 15566665432 4555544
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-11 Score=126.20 Aligned_cols=111 Identities=21% Similarity=0.291 Sum_probs=69.1
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCcee
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAK 470 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~ 470 (523)
|++++.|++++.|++++.||++|.|++++.|.+++|++++.+++.+.+.+++||++|.||.++.+.+.. ......+.
T Consensus 319 ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~---~~~~~~~~ 395 (458)
T PRK14354 319 VGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYD---GKNKFKTI 395 (458)
T ss_pred ECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccc---cccccCCE
Confidence 333444444444444444444444444444444555555555555555556666666666666554321 11223588
Q ss_pred cCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 471 MDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 471 I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
|++++++|.++.+.++ +.||+++.||++++|...
T Consensus 396 igd~~~ig~~s~i~~~-~~ig~~~~v~~~~~v~~~ 429 (458)
T PRK14354 396 IGDNAFIGCNSNLVAP-VTVGDNAYIAAGSTITKD 429 (458)
T ss_pred ECCCcEEccCCEEeCC-cEECCCCEECCCCEECCC
Confidence 9999999999999999 778999999999999543
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.6e-11 Score=94.24 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=52.0
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
|++++.|++++.|. ++.|+++|.|++++.|.+++|++++.|+++++|.+++|++++.|++++.+..
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 67 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPP 67 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECC
Confidence 56777777777774 6788888888888888888888888888888888888888888887777754
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=96.48 Aligned_cols=86 Identities=24% Similarity=0.274 Sum_probs=72.8
Q ss_pred cCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCC
Q psy17795 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPN 465 (523)
Q Consensus 387 ~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~ 465 (523)
+++++++++.|++++.|.++++||++|.|++++.|.. ++||++|.||. .|.+++|++++.|++++.|++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~-------- 79 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGH-------- 79 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEee--------
Confidence 5688899999999998988899999999999998864 88888888865 578888988888888888865
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
++||+++.||+++...|
T Consensus 80 ----------------------siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 80 ----------------------SYLGSWCNLGAGTNNSD 96 (101)
T ss_pred ----------------------eEECCCCEECCCceecc
Confidence 78899999999887754
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=93.16 Aligned_cols=77 Identities=29% Similarity=0.383 Sum_probs=61.5
Q ss_pred EECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCc
Q psy17795 408 SIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSI 487 (523)
Q Consensus 408 ~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~ 487 (523)
+||++|.|++++.|.+++||++|.|++++.|.+++|++++.|++++.+.+
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~------------------------------ 50 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVD------------------------------ 50 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEEC------------------------------
Confidence 47888888888888889999999999999999999999999999999976
Q ss_pred EEeCCCCEECCCcEEeC-eEEcCCcEeC
Q psy17795 488 TILGDGVTVPGELIVLN-SIVLPYKELT 514 (523)
Q Consensus 488 ~iIG~~~~Ig~~~~i~~-~~v~~~~~i~ 514 (523)
++|++++.|++++.+.+ +++++++.|.
T Consensus 51 svv~~~~~i~~~~~i~~~~~ig~~~~i~ 78 (79)
T cd03356 51 SIIGDNAVIGENVRVVNLCIIGDDVVVE 78 (79)
T ss_pred CEECCCCEECCCCEEcCCeEECCCeEEC
Confidence 45566666666666644 5666655543
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=97.97 Aligned_cols=50 Identities=24% Similarity=0.525 Sum_probs=25.0
Q ss_pred CcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEc
Q psy17795 406 NVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE 456 (523)
Q Consensus 406 ~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~ 456 (523)
+++||++|.|+ ++.|.+|+|+++|.|+++|.|.+++|++++.||+++.+.
T Consensus 12 ~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~ 61 (104)
T cd04651 12 NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR 61 (104)
T ss_pred eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEE
Confidence 34444455554 444445555555555555555555555555555555443
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=92.24 Aligned_cols=50 Identities=26% Similarity=0.410 Sum_probs=45.5
Q ss_pred EECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 408 SIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 408 ~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+||++|.|++++.|.+++|+++|.|++++.|.+++|++++.|++++.|.+
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~ 50 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHH 50 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeC
Confidence 36888888888888889999999999999999999999999999999975
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=113.13 Aligned_cols=112 Identities=22% Similarity=0.249 Sum_probs=60.9
Q ss_pred EecCcEECCCCEECCCCEECCCcEECCCCEECCCCE-EeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCC
Q psy17795 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVR-IKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPN 463 (523)
Q Consensus 385 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~-I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~ 463 (523)
+..++.|++++.|.+++.|+++++|.++++|+.++. ++++.|... |.. +++||++|.||.+|.|.+...+
T Consensus 175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgr--Ins-----GavIGhds~IG~gasIg~tLsG-- 245 (341)
T TIGR03536 175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGR--ISA-----GVMVGKGSDLGGGCSTMGTLSG-- 245 (341)
T ss_pred ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecc--ccc-----CCEECCCCEECCCCEEeEEEeC--
Confidence 344555555555555555555555555555555554 332111110 111 2333333333333333211000
Q ss_pred CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEc
Q psy17795 464 PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVL 508 (523)
Q Consensus 464 ~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~ 508 (523)
.....+.||++|+||+++.| | ..||++|+||+|++| .++.|.
T Consensus 246 g~~~~V~IGe~~lIGagA~I--G-I~IGd~~iIGAGavVtagTkI~ 288 (341)
T TIGR03536 246 GGNIVISVGEGCLLGANAGI--G-IPLGDRCTVEAGLYITAGTKVA 288 (341)
T ss_pred CCceeEEECCCcEECCCCEE--e-eEECCCCEECCCCEEeCCcEEE
Confidence 01123788999999999988 6 667999999999988 665554
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-10 Score=106.20 Aligned_cols=94 Identities=13% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~ 458 (523)
+.+.+.+++.+++++.|++++.|++++.||++|.|++++.|+ ++.||++|.|+.++.|. +++||++|.||.++.+.+
T Consensus 89 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~- 167 (197)
T cd03360 89 PSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQ- 167 (197)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcC-
Confidence 345666677777777777777777777777777777777774 36777777777777775 577777777777777754
Q ss_pred CCCCCCCCCceecCCCCeecCCCeec
Q psy17795 459 PCDPNPNKAFAKMDNPPLFNSNGKLN 484 (523)
Q Consensus 459 ~~~~~~~~~~v~I~~~~~ig~~~~i~ 484 (523)
.++|++++.++++++|.
T Consensus 168 ---------~~~ig~~~~v~~~~~v~ 184 (197)
T cd03360 168 ---------GVTIGAGAIIGAGAVVT 184 (197)
T ss_pred ---------CCEECCCCEECCCCEEc
Confidence 25566666666665443
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=104.10 Aligned_cols=90 Identities=20% Similarity=0.336 Sum_probs=68.9
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
+|||||| +|+||+. ||+|++++|+|||+|+++.+.+. ++++|+|++++ +++.+++.. ++++ ++.
T Consensus 1 ~vILa~G--~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~-~~~~Ivvv~~~--~~~~~~~~~----~~~~--~v~ 64 (160)
T PF12804_consen 1 AVILAAG--KSSRMGG-----PKALLPIGGKPLIERVLEALREA-GVDDIVVVTGE--EEIYEYLER----YGIK--VVV 64 (160)
T ss_dssp EEEEESS--SCGGGTS-----CGGGSEETTEEHHHHHHHHHHHH-TESEEEEEEST--HHHHHHHTT----TTSE--EEE
T ss_pred CEEECCc--CcccCCC-----CccceeECCccHHHHHHHHhhcc-CCceEEEecCh--HHHHHHHhc----cCce--EEE
Confidence 6999999 9999975 99999999999999999999996 89999999987 456666644 3444 444
Q ss_pred cc-cccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc
Q psy17795 176 EF-WDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE 220 (523)
Q Consensus 176 ~~-~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~ 220 (523)
+. ...| .+.+++ ...+. ..++ |++++
T Consensus 65 ~~~~~~G-----------------~~~sl~~a~~~~~-~~~~-vlv~~ 93 (160)
T PF12804_consen 65 DPEPGQG-----------------PLASLLAALSQLP-SSEP-VLVLP 93 (160)
T ss_dssp -STSSCS-----------------HHHHHHHHHHTST-TSSE-EEEEE
T ss_pred eccccCC-----------------hHHHHHHHHHhcc-cCCC-cEEEe
Confidence 32 2244 888888 55552 2456 88887
|
... |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-10 Score=106.20 Aligned_cols=92 Identities=13% Similarity=0.225 Sum_probs=68.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~ 458 (523)
+.+.+.+++.|++++.|+++++|+++++||++|.|++++.|+ ++.||+++.|+.++.|. ++.|+++|.||.++.+..
T Consensus 92 ~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~- 170 (201)
T TIGR03570 92 PSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQ- 170 (201)
T ss_pred CCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeC-
Confidence 356677777788888888888887788888888888888885 47788888888888777 688888888888877754
Q ss_pred CCCCCCCCCceecCCCCeecCCCe
Q psy17795 459 PCDPNPNKAFAKMDNPPLFNSNGK 482 (523)
Q Consensus 459 ~~~~~~~~~~v~I~~~~~ig~~~~ 482 (523)
.+.|++++.++++++
T Consensus 171 ---------~~~i~~~~~i~~~~~ 185 (201)
T TIGR03570 171 ---------GVTIGAGAIVGAGAV 185 (201)
T ss_pred ---------CCEECCCCEECCCCE
Confidence 255666666665553
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-09 Score=105.09 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=54.9
Q ss_pred cccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCC-hHHHHHHHH
Q psy17795 90 VSCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYP-SADLQKFVL 161 (523)
Q Consensus 90 ~~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~-~~~i~~~l~ 161 (523)
.++.+.+|||||| .|+||+. ..||+|++++|+|+|+|+++.+.+.+++++|+||+++. .+.+++.+.
T Consensus 21 ~~~~i~aIILAAG--~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~ 88 (252)
T PLN02728 21 KEKSVSVILLAGG--VGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVE 88 (252)
T ss_pred ccCceEEEEEccc--ccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHH
Confidence 3345679999999 9999975 68999999999999999999999866899999999874 334444443
|
|
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-10 Score=105.38 Aligned_cols=62 Identities=24% Similarity=0.359 Sum_probs=56.5
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHh
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLD 162 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~ 162 (523)
|.+|||||| +|+||++ .||+|++++|+|||+|+++++.+. ++++|+++++++.+.++.++.+
T Consensus 1 m~aIILAgG--~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~-~i~~I~Vv~~~~~~~~~~~l~~ 62 (183)
T TIGR00454 1 MDALIMAGG--KGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKS-KVNNIIIATSPHTPKTEEYINS 62 (183)
T ss_pred CeEEEECCc--cCccCCC----CCceEeEECCEEHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHhh
Confidence 679999999 9999975 699999999999999999999985 8999999999888888888875
|
At this time this gene appears to be present only in Archea |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-10 Score=105.61 Aligned_cols=95 Identities=11% Similarity=0.158 Sum_probs=64.5
Q ss_pred eEECCCCEECCCCEEe---ceEECCCCEECCCcEEcCCCCCC-----------------CCCCCceecCCCCeecCCCee
Q psy17795 424 SIILQGASIGNHSLVL---NSIVGRNSKVGNWSRVEGTPCDP-----------------NPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 424 s~Ig~~~~Ig~~~~I~---~~iIg~~~~Ig~~~~i~~~~~~~-----------------~~~~~~v~I~~~~~ig~~~~i 483 (523)
..||++|.|++++.|. ++.||++|.|++++.|.+..++. ......+.|+++++||.++.|
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i 145 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTI 145 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEE
Confidence 4566666666666664 56677777777777665432210 112356889999999999999
Q ss_pred cCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 484 NPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 484 ~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
.++ ++||++|+|+++++|... +.++..+ .+.|+..
T Consensus 146 ~~g-~~Ig~~~~Iga~s~v~~~-i~~~~~~-~G~Pa~~ 180 (192)
T PRK09677 146 LPG-VSIGNGCIVGANSVVTKS-IPENTVI-AGNPAKI 180 (192)
T ss_pred cCC-CEECCCCEECCCCEECcc-cCCCcEE-EecCCEE
Confidence 999 788999999999999654 4444444 3445443
|
|
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=105.36 Aligned_cols=207 Identities=13% Similarity=0.177 Sum_probs=117.4
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh-HHHHHHHHhhhhccCe---
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS-ADLQKFVLDMVQEYKI--- 169 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~-~~i~~~l~~~~~~~~~--- 169 (523)
+.+|||||| .|+||+. ..||+|++++|+|||.|+++++...+.+++|+|+++... ..+.+++.+ ++.
T Consensus 3 ~~~iIlAaG--~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~----~~~~~~ 73 (230)
T PRK13385 3 YELIFLAAG--QGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ----LNVADQ 73 (230)
T ss_pred eEEEEECCe--eccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh----cCcCCC
Confidence 468999999 9999975 679999999999999999999987656999999987633 334444443 221
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc-----cchHH---HHHHHHhcCCcceE
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE-----IRSDV---VILMHSLYSMAILV 239 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~-----i~~D~---l~~~h~~~~~~~~~ 239 (523)
.++++.... + ..++++ .+.+.. .+. ++++. +-.+. +++.+.+.+ +
T Consensus 74 ~~~~v~~g~--~-----------------r~~sv~~gl~~~~~-~d~-vli~~~d~P~i~~~~i~~li~~~~~~~--~-- 128 (230)
T PRK13385 74 RVEVVKGGT--E-----------------RQESVAAGLDRIGN-EDV-ILVHDGARPFLTQDIIDRLLEGVAKYG--A-- 128 (230)
T ss_pred ceEEcCCCc--h-----------------HHHHHHHHHHhccC-CCe-EEEccCCCCCCCHHHHHHHHHHHhhCC--c--
Confidence 233332211 1 235666 445542 233 56654 22333 555554433 2
Q ss_pred EEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCC
Q psy17795 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDT 319 (523)
Q Consensus 240 tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~ 319 (523)
.+.+.++. ..+....+ +.+....++. .-+.--+.+.|+.+.+...-+... .++++.
T Consensus 129 ~~~~~~~~-------dti~~~~~-~~~~~~i~r~----~~~~~qtpq~f~~~~l~~~~~~~~--~~~~~~---------- 184 (230)
T PRK13385 129 AICAVEVK-------DTVKRVKD-KQVIETVDRN----ELWQGQTPQAFELKILQKAHRLAS--EQQFLG---------- 184 (230)
T ss_pred EEEEEecc-------ceEEEEcC-CeeEeccCHH----HHhhhcCCceeeHHHHHHHHHHHH--hcCCCc----------
Confidence 33333331 12222222 4444433211 112223578888765543322211 112222
Q ss_pred CcccccchhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 320 DFNHIQLEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
+|-...+...|. +..++.+.....|.|++|+..+...+.
T Consensus 185 --------td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 185 --------TDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred --------CcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 233333444444 787777777789999999988876553
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-10 Score=107.30 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=45.9
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~ 439 (523)
+++.+. ++.||+++.|++++.| .+++||++|.|++++.|.+++||++|.|++++.|.
T Consensus 13 ~~a~i~-~~~IG~~~~Ig~~a~I-~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 13 PTAELT-ESKLGRYTEIGERTRL-REVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred CCcEEe-ccEeCCCcEECCCcEE-eCCEECCCCEECCCcEEeeeEECCCCEECCCCEEC
Confidence 456664 4678888888888888 47888888888888888888888888888888886
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-10 Score=106.78 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=66.7
Q ss_pred ECCCCEECCCCEE--CCCcEECCCCEECCCCEEee---eEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCC
Q psy17795 391 IHSSASVHPTAIV--GPNVSIDDGAVIGPGVRIKE---SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPN 465 (523)
Q Consensus 391 i~~~~~I~~~~~I--~~~~~Ig~~~~I~~~~~I~~---s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~ 465 (523)
+|+++.|.+.+.+ +.++.||+++.|+.+|+|.+ +.||++|.|+++|.|... +...... -.-.+ ...
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~--~h~~~~~--~r~~g-----~~~ 128 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT--GHPVHHE--LRKNG-----EMY 128 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC--CCCCChh--hcccc-----ccc
Confidence 4455555555443 45667777777766666632 445555555554444311 0000000 00000 011
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCc
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~ 520 (523)
...++||++++||.+++|.+| +.||++|+||+|++|... +.|++++ .+.|+.
T Consensus 129 ~~pi~IGd~v~IG~~~~I~~g-v~IG~~~vIgagsvV~kd-vp~~~v~-~G~PAk 180 (203)
T PRK09527 129 SFPITIGNNVWIGSHVVINPG-VTIGDNSVIGAGSVVTKD-IPPNVVA-AGVPCR 180 (203)
T ss_pred cCCeEECCCcEECCCCEEcCC-CEECCCCEECCCCEEccc-CCCCcEE-EeeCCE
Confidence 235889999999999999999 677999999999999543 3333333 444544
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-10 Score=109.51 Aligned_cols=105 Identities=22% Similarity=0.319 Sum_probs=71.5
Q ss_pred CEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecC
Q psy17795 395 ASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMD 472 (523)
Q Consensus 395 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~ 472 (523)
+.|.|+++|+.+++|++|++|-+.+.|. ++.+++++.|.-++++. .++||+||.||.|+.|.|.. ...+...+.||
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVL--ep~~a~Pv~Ig 186 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVL--EPLQANPVIIG 186 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEe--cCCCCCCeEEC
Confidence 4555555555555555555555555552 24455555555555554 46778888888888886632 22344578899
Q ss_pred CCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 473 NPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 473 ~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
++|+||+++.+..| +.+|+||+|++|++|
T Consensus 187 dncliGAns~~veG-V~vGdg~VV~aGv~I 215 (271)
T COG2171 187 DNCLIGANSEVVEG-VIVGDGCVVAAGVFI 215 (271)
T ss_pred CccEeccccceEee-eEeCCCcEEecceEE
Confidence 99999999988999 677999999999988
|
|
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-08 Score=97.62 Aligned_cols=63 Identities=19% Similarity=0.387 Sum_probs=52.4
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHh
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLD 162 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~ 162 (523)
-+||+||| .|+||+. ..||+|++++|+|+|.|+|+.|.+.+.+++|+||+.. ..+.+++.+.+
T Consensus 2 ~aIilAaG--~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 2 AAIILAAG--SGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEESS---STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH
T ss_pred EEEEeCCc--cchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC
Confidence 38999999 9999997 8999999999999999999999998899999999876 34455554443
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=103.80 Aligned_cols=167 Identities=15% Similarity=0.131 Sum_probs=97.8
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYL 174 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 174 (523)
.+||||+| .|+||. +|+|++++|+|||+|+++.+.+...+++|+|++. .+.+.+++.+ ++..+.+.
T Consensus 3 ~~iIlA~G--~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~----~~~~~~~~ 68 (223)
T cd02513 3 LAIIPARG--GSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARK----YGAEVPFL 68 (223)
T ss_pred EEEEecCC--CCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHH----hCCCceee
Confidence 48999999 999994 4999999999999999999998634888888774 3456665544 34323333
Q ss_pred ecccccchhhhhcccccccccCCCchhHHH--Hhhccc---CCcceEEEEc----cc-h-HH--HHHHHHhcCCcceEEE
Q psy17795 175 QEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW---VQEAVYFTLE----IR-S-DV--VILMHSLYSMAILVTV 241 (523)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~---~~d~~~Lvl~----i~-~-D~--l~~~h~~~~~~~~~tv 241 (523)
.+.+..++ ..+ +.++++ .+++.. ..+. ++++. ++ . ++ +++.+...+ ++.++
T Consensus 69 ~~~~~~~~-----------~~~--~~~~i~~~l~~l~~~~~~~d~-vlv~~~D~P~i~~~~i~~~i~~~~~~~--~~~~~ 132 (223)
T cd02513 69 RPAELATD-----------TAS--SIDVILHALDQLEELGRDFDI-VVLLQPTSPLRSAEDIDEAIELLLSEG--ADSVF 132 (223)
T ss_pred CChHHCCC-----------CCC--cHHHHHHHHHHHHHhCCCCCE-EEEeCCCCCcCCHHHHHHHHHHHHhCC--CCEEE
Confidence 33221110 001 667776 445431 1255 77765 22 2 22 666666655 66666
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecC-----CCcccceeeeeEEEeeHHHHH
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKP-----STFVSTLVNCGVYLFSLDIFQ 294 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp-----~~~~~~l~~~Giyif~~~il~ 294 (523)
.+.+.. +...++.. .++++..+..+.++. +.+.....++|+|+++++.+.
T Consensus 133 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~ 187 (223)
T cd02513 133 SVTEFH--RFPWRALG-LDDNGLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALL 187 (223)
T ss_pred EEEecC--cCcHHhee-eccCCceeccCcccccCCcCCChhHeeECCEEEEEEHHHHH
Confidence 666543 22223332 222211222222211 134456788999999998653
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-10 Score=111.41 Aligned_cols=66 Identities=24% Similarity=0.289 Sum_probs=33.7
Q ss_pred cEECCCCEECCCCEECC--CcEECCCCEECCCCEEee-eEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 389 VYIHSSASVHPTAIVGP--NVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~--~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+.|++++.|++++.|.. +++||++|+||++|.|.+ +++|.. +..+...+++||++|.||.+|+|.+
T Consensus 161 vdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilg 229 (294)
T PLN02694 161 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILG 229 (294)
T ss_pred EEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECC
Confidence 33444444444444432 455666666665555532 222221 2333445677777777777777754
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=7e-10 Score=108.12 Aligned_cols=109 Identities=21% Similarity=0.286 Sum_probs=71.6
Q ss_pred cCcEECCCCEECCCCEECCCcEECCCCEECCCC-EEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCC
Q psy17795 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGV-RIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPN 465 (523)
Q Consensus 387 ~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~-~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~ 465 (523)
.++.|.+.+.|.-++.|+++++|.+++.|..++ +|+++.| ++.|++ +|+||++|.|++++.|.+..- ...
T Consensus 152 ~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~iI--~g~I~H-----dvvIGd~~~IgpGvsI~G~Ls--Gg~ 222 (319)
T TIGR03535 152 TGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGASMV--EGRISA-----GVVVGDGSDIGGGASIMGTLS--GGG 222 (319)
T ss_pred CccEECCCceeeeccEECCCCEEcCCCEEccCceEecCceE--EEEEcc-----CCEECCCCEECCCceecceec--CCC
Confidence 355555566665566666666666666666655 4544333 233333 577788888888888655211 112
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEE
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIV 507 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v 507 (523)
...+.||++|+||+++.| | ..||++|+||+|++| .+..|
T Consensus 223 ~~pV~IGe~~~IGagA~I--G-I~IGd~~VVGAGaVVtkgT~v 262 (319)
T TIGR03535 223 KEVISIGERCLLGANSGL--G-ISLGDDCVVEAGLYVTAGTKV 262 (319)
T ss_pred cccEEECCCcEECCCCEE--C-eEECCCCEECCCCEEeCCeEE
Confidence 335899999999999998 7 567999999999988 45433
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.2e-10 Score=115.88 Aligned_cols=94 Identities=21% Similarity=0.378 Sum_probs=73.6
Q ss_pred ceEecCcEECCCCEECCCCEEC---CCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC
Q psy17795 383 CKTIGDVYIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP 459 (523)
Q Consensus 383 ~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~ 459 (523)
+.|++++.| .++.|+++|.|+ .+++||++|.|+++|.|.+|+|+++|.|+++|.|.+|+|++++.|++++.+.+..
T Consensus 283 ~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~ 361 (380)
T PRK05293 283 QYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGK 361 (380)
T ss_pred CEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCC
Confidence 445555555 244566666664 4689999999999999999999999999999999999999999999999997742
Q ss_pred CCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 460 CDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 460 ~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
.. ..+||+++.|+++++|
T Consensus 362 ~~-------------------------~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 362 EV-------------------------ITVIGENEVIGVGTVI 379 (380)
T ss_pred ce-------------------------eEEEeCCCCCCCCcEe
Confidence 21 1556777777777665
|
|
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=100.34 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=68.9
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYL 174 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 174 (523)
.+|||||| .|+||++ ||+|++++|+|||+|+++.+.+. ++++|+|++++....+.+++.. ++. .++
T Consensus 2 ~~vIlAgG--~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~-~~~~i~vv~~~~~~~~~~~~~~----~~~--~~~ 67 (186)
T cd04182 2 AAIILAAG--RSSRMGG-----NKLLLPLDGKPLLRHALDAALAA-GLSRVIVVLGAEADAVRAALAG----LPV--VVV 67 (186)
T ss_pred eEEEECCC--CCCCCCC-----CceeCeeCCeeHHHHHHHHHHhC-CCCcEEEECCCcHHHHHHHhcC----CCe--EEE
Confidence 48999999 9999987 99999999999999999999986 8999999998866555554432 333 333
Q ss_pred ecc-cccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc
Q psy17795 175 QEF-WDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE 220 (523)
Q Consensus 175 ~~~-~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~ 220 (523)
... ...| ++++++ .+++....+. ++++.
T Consensus 68 ~~~~~~~G-----------------~~~~i~~al~~~~~~~~~-vlv~~ 98 (186)
T cd04182 68 INPDWEEG-----------------MSSSLAAGLEALPADADA-VLILL 98 (186)
T ss_pred eCCChhhC-----------------HHHHHHHHHHhccccCCE-EEEEe
Confidence 322 2234 777787 5555422456 77766
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-09 Score=91.41 Aligned_cols=74 Identities=16% Similarity=0.360 Sum_probs=66.8
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~ 458 (523)
++.+ .++.|++++.|+ ++.| .+++|+++|.|++++.|.+|+|++++.||+++.|.+++||+++.|++++.+.+.
T Consensus 7 ~~~i-~~s~Ig~~~~I~-~~~I-~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 7 RGEV-KNSLVSEGCIIS-GGTV-ENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred CCEE-EeEEECCCCEEc-CeEE-EeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 4555 357788888888 7888 689999999999999999999999999999999999999999999999999875
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=95.15 Aligned_cols=91 Identities=14% Similarity=0.257 Sum_probs=53.8
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe-----c----eEECCCCEECC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-----N----SIVGRNSKVGN 451 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-----~----~iIg~~~~Ig~ 451 (523)
.+.+...+.|++++.|.+++.|..++.||++|.|.. .|+. ++|+++|.||++|+|. + +.||++|.||.
T Consensus 7 ~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG~ 84 (147)
T cd04649 7 ADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGA 84 (147)
T ss_pred CCEECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEECC
Confidence 444555555555555555555555555555555541 2212 6778888888888886 2 66777777777
Q ss_pred CcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 452 WSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 452 ~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
++.| + +.||+++.||+++++..+
T Consensus 85 ga~I-g-----------v~IG~~~vIGaGsvV~k~ 107 (147)
T cd04649 85 NSGI-G-----------ISLGDNCIVEAGLYVTAG 107 (147)
T ss_pred CCEE-e-----------EEECCCCEECCCCEEeCC
Confidence 7766 3 456666555555544444
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-09 Score=97.17 Aligned_cols=110 Identities=16% Similarity=0.256 Sum_probs=76.1
Q ss_pred CCCEECCCCEEC--CCcEECCCCEECCCCEEee----eEECCCCEECCCCEEec-------------eEECCCCEECCCc
Q psy17795 393 SSASVHPTAIVG--PNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVLN-------------SIVGRNSKVGNWS 453 (523)
Q Consensus 393 ~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~~-------------~iIg~~~~Ig~~~ 453 (523)
.++.|+..+.|. +++.||+++.|+++|.|.. +.||++|.|+++|.|.. ++||+++.|++++
T Consensus 6 ~~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~ 85 (161)
T cd03359 6 SGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENC 85 (161)
T ss_pred CCCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCC
Confidence 344555555553 3667777777777777753 68999999999999973 4788999999998
Q ss_pred EEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeC
Q psy17795 454 RVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELT 514 (523)
Q Consensus 454 ~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~ 514 (523)
.+.+ ..|++++.|+.++.|.++ ++|++++.|+++++| .+..++|+..+.
T Consensus 86 ~i~~-----------~~Ig~~v~Ig~~~~Ig~~-~~I~~~~~i~~g~~V~~~~~i~~~~vv~ 135 (161)
T cd03359 86 VVNA-----------AQIGSYVHIGKNCVIGRR-CIIKDCVKILDGTVVPPDTVIPPYSVVS 135 (161)
T ss_pred EEEe-----------eEEcCCcEECCCCEEcCC-CEECCCcEECCCCEECCCCEeCCCCEEe
Confidence 8865 355666666666666666 566777777777766 455555555553
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=107.14 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=22.7
Q ss_pred eecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 469 AKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 469 v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
.+||++++||++++|..+ +.||++|+||+|++|.
T Consensus 194 p~IGd~V~IGaga~Ilgg-v~IG~~a~IGAgSvV~ 227 (273)
T PRK11132 194 PKIREGVMIGAGAKILGN-IEVGRGAKIGAGSVVL 227 (273)
T ss_pred CEECCCcEEcCCCEEcCC-CEECCCCEECCCCEEC
Confidence 455666666666666655 5668888888888773
|
|
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=96.79 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=62.1
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~ 169 (523)
+|.+-+|||||| .|+||+. ..||++++++|+||++|+|+.|..++.+++|+|++.. ....+.++... ..+-
T Consensus 2 ~~~~~~vilAaG--~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~---~~~~ 73 (230)
T COG1211 2 RMMVSAVILAAG--FGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL---SADK 73 (230)
T ss_pred CceEEEEEEcCc--cccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh---ccCC
Confidence 355679999999 9999998 9999999999999999999999999999999999986 44445554421 1233
Q ss_pred eEEEEec
Q psy17795 170 NIRYLQE 176 (523)
Q Consensus 170 ~i~~~~~ 176 (523)
.+.++..
T Consensus 74 ~v~~v~G 80 (230)
T COG1211 74 RVEVVKG 80 (230)
T ss_pred eEEEecC
Confidence 4656644
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=101.08 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=39.5
Q ss_pred CceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 467 AFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 467 ~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
..+.||++++||.+++|.++ +.||++|+|+++++|... |.+++++ .+.|+..
T Consensus 128 ~~v~IGd~v~IG~~a~I~~g-v~IG~~~vIgagsvV~~d-i~~~~i~-~G~PAr~ 179 (183)
T PRK10092 128 KPVTIGNNVWIGGRAVINPG-VTIGDNVVVASGAVVTKD-VPDNVVV-GGNPARI 179 (183)
T ss_pred CCeEECCCcEECCCCEECCC-CEECCCCEECCCCEEccc-cCCCcEE-EecCcEE
Confidence 46888999999999999999 677999999999999544 3444444 4556543
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-09 Score=98.16 Aligned_cols=105 Identities=10% Similarity=0.048 Sum_probs=61.3
Q ss_pred CCcEECCCCEECCCCEEe---eeEECCCCEECCCCEEeceE-ECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCC
Q psy17795 405 PNVSIDDGAVIGPGVRIK---ESIILQGASIGNHSLVLNSI-VGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSN 480 (523)
Q Consensus 405 ~~~~Ig~~~~I~~~~~I~---~s~Ig~~~~Ig~~~~I~~~i-Ig~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~ 480 (523)
.++.||++|.|+.++.|. ..+||++|.|+++|+|.... -.+......+.. ....+.||++++||.+
T Consensus 61 ~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~----------~~~~v~IG~~~~Ig~~ 130 (169)
T cd03357 61 YNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLE----------YAKPITIGDNVWIGGG 130 (169)
T ss_pred CcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccce----------ecCCcEeCCCEEECCC
Confidence 345555555555555553 24556666666655554110 000000001111 1235788889999999
Q ss_pred CeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCccc
Q psy17795 481 GKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEIL 522 (523)
Q Consensus 481 ~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~i 522 (523)
++|.++ +.||++|+||++++|.+. |.++.++ .+.|+.+|
T Consensus 131 a~I~~g-v~Ig~~~~VgagavV~~~-vp~~~vv-~G~PAkvi 169 (169)
T cd03357 131 VIILPG-VTIGDNSVIGAGSVVTKD-IPANVVA-AGNPARVI 169 (169)
T ss_pred CEEeCC-CEECCCCEECCCCEEccc-cCCCcEE-EccccEEC
Confidence 999888 777999999999999664 4555444 46676543
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.9e-09 Score=89.74 Aligned_cols=102 Identities=21% Similarity=0.333 Sum_probs=60.4
Q ss_pred cEECCCCEECCCCEECC--CcEECCCCEECCCCEEeee---EECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCC
Q psy17795 389 VYIHSSASVHPTAIVGP--NVSIDDGAVIGPGVRIKES---IILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPN 463 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~--~~~Ig~~~~I~~~~~I~~s---~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~ 463 (523)
+.|++++.|++++.|.+ ++.||++|.|+++|.|.++ .++.++.+........++||++|.|++++.+.
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~------- 74 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVIL------- 74 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEc-------
Confidence 46677777777777665 6777777777777777653 22222222222333355555555555555553
Q ss_pred CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 464 PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 464 ~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
++ ++||++|.|++++.|.. .+.++..+ .+.|+..
T Consensus 75 ---------------------~~-~~ig~~~~i~~~~~v~~-~i~~~~i~-~g~pa~~ 108 (109)
T cd04647 75 ---------------------PG-VTIGDGAVVGAGSVVTK-DVPPNSIV-AGNPAKV 108 (109)
T ss_pred ---------------------CC-CEECCCCEECCCCEEee-ECCCCCEE-EccccEe
Confidence 33 66788888888888863 34455444 4556654
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-09 Score=98.67 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=71.5
Q ss_pred CceEecCcEECCCCEECC--CCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe----------------ceEE
Q psy17795 382 QCKTIGDVYIHSSASVHP--TAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL----------------NSIV 443 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~----------------~~iI 443 (523)
++.|+.++.|++++.|.. +..|++++.|+++|.|.... .+.||++|.|+++++|. ..+|
T Consensus 51 ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~---~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~I 127 (182)
T PRK10502 51 GAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLG---EITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVI 127 (182)
T ss_pred ccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccC---ceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEE
Confidence 566777788888877754 47788888888888886432 34456666666666552 3688
Q ss_pred CCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCC
Q psy17795 444 GRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRS 516 (523)
Q Consensus 444 g~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~ 516 (523)
|++|.||.++.|.+ .++||+++.|++++++... +++++++.+. |.+.|+..
T Consensus 128 gd~~~Ig~~a~I~~----------Gv~Ig~~~vIga~svV~~~---------v~~~~v~~G~---Pa~~ik~r 178 (182)
T PRK10502 128 GEGCWLAADVFVAP----------GVTIGSGAVVGARSSVFKS---------LPANTICRGN---PAVPIRPR 178 (182)
T ss_pred cCCcEEcCCCEEcC----------CCEECCCCEECCCCEEecc---------cCCCcEEECC---cceEeccc
Confidence 88888888888865 3667777777766643322 5566655332 44455443
|
|
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-08 Score=92.44 Aligned_cols=221 Identities=13% Similarity=0.098 Sum_probs=141.3
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|...+||+|-- ..|||.- |||-.|+|+|||.|+.++..++ +.++++|.+.+ +.+.+.+.+ +|.++
T Consensus 2 ~~~~viIPAR~--~STRLpg------KPLadI~GkpmI~rV~e~a~~s-~~~rvvVATDd--e~I~~av~~----~G~~a 66 (247)
T COG1212 2 MKFVVIIPARL--ASTRLPG------KPLADIGGKPMIVRVAERALKS-GADRVVVATDD--ERIAEAVQA----FGGEA 66 (247)
T ss_pred CceEEEEecch--hcccCCC------CchhhhCCchHHHHHHHHHHHc-CCCeEEEEcCC--HHHHHHHHH----hCCEE
Confidence 34457788777 7888854 9999999999999999999986 99999999875 578887776 56666
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHHHhhcccCCcceEEEEccc-------hHH---HHHHHHhcCCcceEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIR-------SDV---VILMHSLYSMAILVTV 241 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~~~~i~~~~d~~~Lvl~i~-------~D~---l~~~h~~~~~~~~~tv 241 (523)
..-..+.+.| ..|.+.++. .+.. +++ -+|+|+- ... +.+..++.+ +++.-
T Consensus 67 vmT~~~h~SG--------------TdR~~Ev~~--~l~~-~~~-~iIVNvQGDeP~i~p~~I~~~~~~L~~~~--~~~aT 126 (247)
T COG1212 67 VMTSKDHQSG--------------TDRLAEVVE--KLGL-PDD-EIIVNVQGDEPFIEPEVIRAVAENLENSN--ADMAT 126 (247)
T ss_pred EecCCCCCCc--------------cHHHHHHHH--hcCC-Ccc-eEEEEccCCCCCCCHHHHHHHHHHHHhCC--cceee
Confidence 5556667776 011344443 2221 122 4666611 112 555556555 67666
Q ss_pred EEEeeCCCC---CcceeEEEEcCCCCcEEEEeecCCCcc-------cceeeeeEEEeeHHHHHHHHHhhccccccccccc
Q psy17795 242 MATEATRQQ---SVYYGCIVRKQQTSEISHYVEKPSTFV-------STLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGN 311 (523)
Q Consensus 242 ~~~~~~~~~---~~~~g~v~~d~~~~~V~~~~ekp~~~~-------~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~ 311 (523)
++.+..+++ ..+--.++.|.+ |+-+-|...|--+. ..+--.|+|.|++.+++.+....+..-
T Consensus 127 l~~~i~~~ee~~nPN~VKvV~d~~-g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~L------- 198 (247)
T COG1212 127 LAVKITDEEEAFNPNVVKVVLDKE-GYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPL------- 198 (247)
T ss_pred eeeecCCHHHhcCCCcEEEEEcCC-CcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchh-------
Confidence 666553221 112234557876 89999988764221 346678999999999887766433220
Q ss_pred ccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhH-hhhccchhhhhccHHHH
Q psy17795 312 YMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWW-SQLKSAGSAIYANRHYL 366 (523)
Q Consensus 312 ~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w-~dIgt~~dyl~an~~~l 366 (523)
| ...++ +-|..|-...++.+...+..- ..++|++|+-++...+.
T Consensus 199 -----E----~~E~L--EQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 199 -----E----KIESL--EQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred -----H----HHHHH--HHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 0 01111 334444444458888777554 89999999887766554
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-09 Score=84.69 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=34.7
Q ss_pred CCCEECCCCEEe-eeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 411 DGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 411 ~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+++.|++++.|+ +++|+++|.||++|.|.+++|++++.|++++.|.+
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~ 51 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKS 51 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeC
Confidence 333444444442 24566788889999999999999999999999976
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.2e-09 Score=90.54 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=35.1
Q ss_pred eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
.+++++.|++++.|++++.|+++++||++|.|++++.+.++.+ .+..+..++.+.+++||++|.||+++.+..
T Consensus 12 ~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~ 84 (119)
T cd03358 12 FIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY-PRSKIYRKWELKGTTVKRGASIGANATILP 84 (119)
T ss_pred EECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC-CccccccccccCCcEECCCcEECcCCEEeC
Confidence 3344444444444444444444444444444444444433222 222223345566677777777777777643
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.5e-09 Score=97.84 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=49.8
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHH
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFV 160 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l 160 (523)
+|||||| .|+||++ ||+|++++|+|||+|+++.+.+. ++++|+|++++..+.+.+.+
T Consensus 2 ~iIla~G--~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~-~~~~iivv~~~~~~~~~~~~ 58 (188)
T TIGR03310 2 AIILAAG--LSSRMGQ-----NKLLLPYKGKTILEHVVDNALRL-FFDEVILVLGHEADELVALL 58 (188)
T ss_pred eEEECCC--CcccCCC-----CceecccCCeeHHHHHHHHHHHc-CCCcEEEEeCCcHHHHHHHh
Confidence 7999999 9999985 89999999999999999999985 89999999988665554443
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-09 Score=106.33 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=17.2
Q ss_pred ecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 470 KMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 470 ~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
+||++|+||++++|..+ +.||++|+||+|++|
T Consensus 259 ~IGd~V~IGagA~IlG~-V~IGd~aiIGAGSVV 290 (355)
T PLN02739 259 KIGDGALLGACVTILGN-ISIGAGAMVAAGSLV 290 (355)
T ss_pred EECCCCEEcCCCEEeCC-eEECCCCEECCCCEE
Confidence 34444444444444444 555777777777766
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-09 Score=97.35 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=18.6
Q ss_pred eecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 469 AKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 469 v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
-+||+++.||+++.|... ..||+|+.||+|++|
T Consensus 120 PtIg~~V~IGagAkILG~-I~IGd~akIGA~sVV 152 (194)
T COG1045 120 PTIGNGVYIGAGAKILGN-IEIGDNAKIGAGSVV 152 (194)
T ss_pred CccCCCeEECCCCEEEcc-eEECCCCEECCCceE
Confidence 344444444444444444 345777777777777
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=96.64 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=39.0
Q ss_pred cCcEECCCCEECCCCEEC--CCcEECCCCEECCCCEEeeeEECCCCEE---CCCC-EEeceEECCCCEECCCcEEcCCCC
Q psy17795 387 GDVYIHSSASVHPTAIVG--PNVSIDDGAVIGPGVRIKESIILQGASI---GNHS-LVLNSIVGRNSKVGNWSRVEGTPC 460 (523)
Q Consensus 387 ~~~~i~~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~~s~Ig~~~~I---g~~~-~I~~~iIg~~~~Ig~~~~i~~~~~ 460 (523)
.++.||+++.|+.++.|. .++.||++|.|+++|.|... ++.... ..+. ....++||++|.||.++.|.+
T Consensus 74 ~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~--~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~--- 148 (203)
T PRK09527 74 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT--GHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINP--- 148 (203)
T ss_pred CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC--CCCCChhhccccccccCCeEECCCcEECCCCEEcC---
Confidence 345555555555555542 23555555555555555321 000000 0001 112456666666666666654
Q ss_pred CCCCCCCceecCCCCeecCCC
Q psy17795 461 DPNPNKAFAKMDNPPLFNSNG 481 (523)
Q Consensus 461 ~~~~~~~~v~I~~~~~ig~~~ 481 (523)
.++||++++|++++
T Consensus 149 -------gv~IG~~~vIgags 162 (203)
T PRK09527 149 -------GVTIGDNSVIGAGS 162 (203)
T ss_pred -------CCEECCCCEECCCC
Confidence 24555555555554
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.6e-09 Score=101.48 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=63.5
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCE-ECCCCE---Ee-eeEECCCCEECCCCEEe-----c----eEECCCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAV-IGPGVR---IK-ESIILQGASIGNHSLVL-----N----SIVGRNS 447 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~-I~~~~~---I~-~s~Ig~~~~Ig~~~~I~-----~----~iIg~~~ 447 (523)
+..|.+.+.|.+++.|++++.|.++++|+.++. +|++++ |. .++||++|.||.+|+|. + +.||++|
T Consensus 178 gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IGe~~ 257 (341)
T TIGR03536 178 GVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVGEGC 257 (341)
T ss_pred CcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEECCCc
Confidence 556667777777777777777777777777777 565555 32 26777888888888874 3 6677777
Q ss_pred EECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 448 KVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 448 ~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
.||.++.| + +.||++|.||++++|..+
T Consensus 258 lIGagA~I-G-----------I~IGd~~iIGAGavVtag 284 (341)
T TIGR03536 258 LLGANAGI-G-----------IPLGDRCTVEAGLYITAG 284 (341)
T ss_pred EECCCCEE-e-----------eEECCCCEECCCCEEeCC
Confidence 77777777 3 567777666666655555
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-08 Score=94.65 Aligned_cols=165 Identities=11% Similarity=0.060 Sum_probs=101.0
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
|||+|+| .++|| | +|.+++++|+|||.|+++.+.+...+++|+|++.. +++.+...+ ++..+.+.+
T Consensus 2 aiIpArG--~Skr~-~-----~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a~~----~g~~v~~~r 67 (222)
T TIGR03584 2 AIIPARG--GSKRI-P-----RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVAKS----YGASVPFLR 67 (222)
T ss_pred EEEccCC--CCCCC-C-----CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHHHH----cCCEeEEeC
Confidence 7999999 89999 4 59999999999999999999987568888876653 456665543 565555544
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--Hhhcc--cCCcceEEEEc----cc--hHH--HHHHHHhcCCcceEEEEE
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH--WVQEAVYFTLE----IR--SDV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~--~~~d~~~Lvl~----i~--~D~--l~~~h~~~~~~~~~tv~~ 243 (523)
+.+..+ +..+ +.++++ .+.+. ...|. ++++. ++ .++ +++.+.+.+ ++..+.+
T Consensus 68 ~~~l~~-----------d~~~--~~~si~~~l~~l~~~~~~d~-v~~l~~tsPl~~~~~I~~~i~~~~~~~--~ds~~sv 131 (222)
T TIGR03584 68 PKELAD-----------DFTG--TAPVVKHAIEELKLQKQYDH-ACCIYATAPFLQAKILKEAFELLKQPN--AHFVFSV 131 (222)
T ss_pred hHHHcC-----------CCCC--chHHHHHHHHHHhhcCCCCE-EEEecCCCCcCCHHHHHHHHHHHHhCC--CCEEEEe
Confidence 332211 1122 667777 44442 12344 66655 22 244 666665555 6766666
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeec----C-C-CcccceeeeeEEEeeHHHHH
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEK----P-S-TFVSTLVNCGVYLFSLDIFQ 294 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ek----p-~-~~~~~l~~~Giyif~~~il~ 294 (523)
.+... .+ .+. ...+++ |++..+... + + .+.....+.++|+++++.+.
T Consensus 132 ~~~~~-~~-~~~-~~~~~~-g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~ 184 (222)
T TIGR03584 132 TSFAF-PI-QRA-FKLKEN-GGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWL 184 (222)
T ss_pred eccCC-Ch-HHh-eEECCC-CcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHH
Confidence 65432 12 122 233444 666554421 1 1 12345679999999998763
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.9e-09 Score=86.79 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+.+.+.++++|++++.|++++.|+++++||++|.|+. .|.+++|++++.|++++.|.+++||+++.||+++.+.+
T Consensus 22 ~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 22 PFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSD 96 (101)
T ss_pred CCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCceecc
Confidence 4566777788888888888888888888888888864 57789999999999999999999999999999999876
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.7e-09 Score=92.93 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=11.5
Q ss_pred EEeCCCCEECCCcEEeCe
Q psy17795 488 TILGDGVTVPGELIVLNS 505 (523)
Q Consensus 488 ~iIG~~~~Ig~~~~i~~~ 505 (523)
+.||+++.|+++++|.+.
T Consensus 111 v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 111 ITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred CEECCCCEECCCCEECCc
Confidence 555777777777766443
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=85.78 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=39.0
Q ss_pred CceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 467 AFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 467 ~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
+.+.|+++|+|+.++.|.++ +.||++|.|+++++|.+. +.++..+ .+.|+..
T Consensus 55 ~~v~Ig~~~~ig~~~~i~~g-~~Ig~~~~i~~gs~v~~~-~~~~~~~-~G~Pa~~ 106 (107)
T cd05825 55 APIVIGDGAWVAAEAFVGPG-VTIGEGAVVGARSVVVRD-LPAWTVY-AGNPAVP 106 (107)
T ss_pred CCEEECCCCEECCCCEECCC-CEECCCCEECCCCEEeCc-CCCCCEE-ECCccEe
Confidence 45778888888888888888 778999999999999654 3444444 4666543
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.9e-09 Score=109.17 Aligned_cols=104 Identities=12% Similarity=0.211 Sum_probs=72.3
Q ss_pred CCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECC----------------C---CEECCCc
Q psy17795 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGR----------------N---SKVGNWS 453 (523)
Q Consensus 393 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~----------------~---~~Ig~~~ 453 (523)
+++.+ .++.|.+ ++|+++|+|+ +|.|++|+|+++|.||++|+|.+++|+. + +.||++|
T Consensus 304 ~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 380 (436)
T PLN02241 304 PPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENT 380 (436)
T ss_pred CCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCC
Confidence 55666 3566644 9999999999 9999999999999999999999888855 2 3788888
Q ss_pred EEcCCCCCCCCCCCceecCCCCeecCCCeecC-----CcEEeCCCCEECCCc-EE-eCeEEcCC
Q psy17795 454 RVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNP-----SITILGDGVTVPGEL-IV-LNSIVLPY 510 (523)
Q Consensus 454 ~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~-----g~~iIG~~~~Ig~~~-~i-~~~~v~~~ 510 (523)
.+.+ +.|+++++||.++.+.. +-.++|++|.|++|. +| .++.+.++
T Consensus 381 ~i~~-----------~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 433 (436)
T PLN02241 381 KIRN-----------AIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDG 433 (436)
T ss_pred EEcc-----------eEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCC
Confidence 8865 34566666666655542 223446666666663 33 33344443
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=99.44 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=53.6
Q ss_pred CcEECCCCEECCCCEEC--CCcEECCCCEECCCCEEeeeEECCCCEECC---CCEEeceEECCCCEECCCcEEcCCCCCC
Q psy17795 388 DVYIHSSASVHPTAIVG--PNVSIDDGAVIGPGVRIKESIILQGASIGN---HSLVLNSIVGRNSKVGNWSRVEGTPCDP 462 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~---~~~I~~~iIg~~~~Ig~~~~i~~~~~~~ 462 (523)
++.|++++.|++++.|+ .+++||++|+||++|.| +++++||. .+...+++||++|.||.||.|.+
T Consensus 141 gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilg----- 210 (273)
T PRK11132 141 QVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILG----- 210 (273)
T ss_pred eeEecCcceECCCeEEcCCCCeEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCEEcC-----
Confidence 34444444444444443 23456666666655555 24444442 12223578888888888888876
Q ss_pred CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 463 NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 463 ~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
.++||+++.||++++|... |++++++.
T Consensus 211 -----gv~IG~~a~IGAgSvV~~d---------Vp~~~~v~ 237 (273)
T PRK11132 211 -----NIEVGRGAKIGAGSVVLQP---------VPPHTTAA 237 (273)
T ss_pred -----CCEECCCCEECCCCEECcc---------cCCCcEEE
Confidence 4677777777777643322 66666663
|
|
| >KOG4042|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-09 Score=92.73 Aligned_cols=110 Identities=20% Similarity=0.231 Sum_probs=82.1
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEec--------------eEECCCCEEC
Q psy17795 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVLN--------------SIVGRNSKVG 450 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~~--------------~iIg~~~~Ig 450 (523)
+.|.|++++...+.|.+.++|+++|+|.+.+++-. .+||+|+.|.+.+.|.+ -+||.+....
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFe 88 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFE 88 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEE
Confidence 66777777777777778888888888888777633 67888888888777753 4677777776
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCC
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPY 510 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~ 510 (523)
-||.... .++|++..|++.+.+.+| +.+.+||.||+++.+......|.
T Consensus 89 Vgc~s~A-----------~kvGd~NVieskayvg~g-v~vssgC~vGA~c~v~~~q~lpe 136 (190)
T KOG4042|consen 89 VGCKSSA-----------KKVGDRNVIESKAYVGDG-VSVSSGCSVGAKCTVFSHQNLPE 136 (190)
T ss_pred eechhhh-----------hhhcCcceEeeeeEecCC-cEEcCCceeccceEEecccccCC
Confidence 6666654 468888899999999898 66699999999998855444433
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-08 Score=84.38 Aligned_cols=81 Identities=26% Similarity=0.482 Sum_probs=45.7
Q ss_pred EECCCCEECCCCEECC--CcEECCCCEECCCCEEeeeEECCCCEECCCCE---EeceEECCCCEECCCcEEcCCCCCCCC
Q psy17795 390 YIHSSASVHPTAIVGP--NVSIDDGAVIGPGVRIKESIILQGASIGNHSL---VLNSIVGRNSKVGNWSRVEGTPCDPNP 464 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~--~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~---I~~~iIg~~~~Ig~~~~i~~~~~~~~~ 464 (523)
.|++++.|++++.|+. .++|++++.|++++.| ++++.|++++. +..++||+++.|+.++.+.+.
T Consensus 4 ~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~------ 72 (101)
T cd03354 4 DIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGN------ 72 (101)
T ss_pred EeCCCCEECCCEEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECc------
Confidence 3444444444444432 3455555555555543 34555555554 446677777777777666542
Q ss_pred CCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 465 NKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 465 ~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
+.||++|.|+++++|.+
T Consensus 73 -----------------------~~Ig~~~~i~~~~~i~~ 89 (101)
T cd03354 73 -----------------------ITIGDNVKIGANAVVTK 89 (101)
T ss_pred -----------------------CEECCCCEECCCCEECc
Confidence 55677777777777743
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=103.37 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=30.6
Q ss_pred ceEecCcEECCCCEECC--CCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 383 CKTIGDVYIHSSASVHP--TAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 383 ~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
..|++.+.||++++|.+ +++|+++++||++|.|..+++|+.. +......+++||++|.||.|+.|.+
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~--------g~~~g~~~piIGd~V~IGagA~Ilg 295 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT--------GKQSGDRHPKIGDGVLIGAGTCILG 295 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc--------cccCCccCceeCCCeEECCceEEEC
Confidence 34555555555555554 3344444444444444444444321 0011122456666666666666543
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=80.21 Aligned_cols=66 Identities=30% Similarity=0.535 Sum_probs=44.7
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEee---------eEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE---------SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~---------s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i 455 (523)
.|++++.|++++.|++++.||++|.|++++.|.+ ..||++|.|+.+|.|. ++.|++++.|++++.|
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence 5677777777777766777788888877777764 4666666666666664 4666666666665554
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.8e-09 Score=108.93 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=59.0
Q ss_pred eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECC------------------
Q psy17795 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGR------------------ 445 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~------------------ 445 (523)
.+...+.+.+.+.+. ++.| .++.||++|.| +++.|++|+||.+|.||++|.|.+|+|+.
T Consensus 288 ~i~~~~~~~~~a~~~-~~~~-~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~ 364 (429)
T PRK02862 288 PIYTRARYLPPSKLL-DATI-TESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGK 364 (429)
T ss_pred ceeccCCCCCCcccc-ccEE-EeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCC
Confidence 344445566666664 5666 46899999999 89999999999999999999999999976
Q ss_pred -CCEECCCcEEcCC
Q psy17795 446 -NSKVGNWSRVEGT 458 (523)
Q Consensus 446 -~~~Ig~~~~i~~~ 458 (523)
++.||++|.|.++
T Consensus 365 ~~~~Ig~~~~i~~~ 378 (429)
T PRK02862 365 PPLGIGEGTTIKRA 378 (429)
T ss_pred cccEECCCCEEEEE
Confidence 6889999999763
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.1e-08 Score=92.55 Aligned_cols=108 Identities=11% Similarity=0.172 Sum_probs=65.4
Q ss_pred CcEECCCCEECCCCEE----CCCcEECCCCEECCCCEEe---eeEECCCCEECCCCEEec--------------------
Q psy17795 388 DVYIHSSASVHPTAIV----GPNVSIDDGAVIGPGVRIK---ESIILQGASIGNHSLVLN-------------------- 440 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I----~~~~~Ig~~~~I~~~~~I~---~s~Ig~~~~Ig~~~~I~~-------------------- 440 (523)
+..+++++.++.++.+ .+.+.||++|.|++++.|. .+.||++|.|++++.|.+
T Consensus 43 ~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~ 122 (192)
T PRK09677 43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPD 122 (192)
T ss_pred eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChh
Confidence 3445555555555554 3567777777887777775 478888888888887752
Q ss_pred --------eEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcE
Q psy17795 441 --------SIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKE 512 (523)
Q Consensus 441 --------~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~ 512 (523)
+.||++|.||.++.|.+ .++|+++++|++++++. + .|++++++.+. |.+.
T Consensus 123 ~~~~~~~~v~Ig~~~~ig~~~~i~~----------g~~Ig~~~~Iga~s~v~-------~--~i~~~~~~~G~---Pa~~ 180 (192)
T PRK09677 123 MRTLESSAVVIGQRVWIGENVTILP----------GVSIGNGCIVGANSVVT-------K--SIPENTVIAGN---PAKI 180 (192)
T ss_pred hcccccCCeEEcCCcEECCCCEEcC----------CCEECCCCEECCCCEEC-------c--ccCCCcEEEec---CCEE
Confidence 45667777776666654 25566665555554332 2 14555555332 5555
Q ss_pred eCCCC
Q psy17795 513 LTRSF 517 (523)
Q Consensus 513 i~~~~ 517 (523)
+++--
T Consensus 181 ik~~~ 185 (192)
T PRK09677 181 IKKYN 185 (192)
T ss_pred EeccC
Confidence 55443
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=92.65 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=22.7
Q ss_pred cCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEe
Q psy17795 471 MDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKEL 513 (523)
Q Consensus 471 I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i 513 (523)
|+++|+||+++.|..+ ++||++|.||++++|... |.+++++
T Consensus 116 Ig~~v~Ig~~a~I~~~-v~IG~~~~Iga~s~V~~d-vp~~~~~ 156 (162)
T TIGR01172 116 VGEGVMIGAGAKVLGN-IEVGENAKIGANSVVLKD-VPPGATV 156 (162)
T ss_pred ECCCcEEcCCCEEECC-cEECCCCEECCCCEECCC-CCCCCEE
Confidence 3333333334444334 667888888888877443 4444444
|
Cysteine biosynthesis |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-08 Score=89.32 Aligned_cols=74 Identities=26% Similarity=0.370 Sum_probs=35.8
Q ss_pred CceEecCcEECCCCEECC--CCEECCCcEECCCCEECCCCEEee--------eEECCCCEECCCCEEe-ceEECCCCEEC
Q psy17795 382 QCKTIGDVYIHSSASVHP--TAIVGPNVSIDDGAVIGPGVRIKE--------SIILQGASIGNHSLVL-NSIVGRNSKVG 450 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~--------s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig 450 (523)
+..|.+.+.|++++.|++ ++.|++++.||++|.|+++++|++ +.||++|.||.++.|. ++.||+++.||
T Consensus 41 g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Ig 120 (146)
T PRK10191 41 GYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVG 120 (146)
T ss_pred CcccCCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEEC
Confidence 344555556666666665 344455555555555554444432 2444444444444443 34444444444
Q ss_pred CCcEE
Q psy17795 451 NWSRV 455 (523)
Q Consensus 451 ~~~~i 455 (523)
+++.+
T Consensus 121 ags~V 125 (146)
T PRK10191 121 AGSVV 125 (146)
T ss_pred CCCEE
Confidence 44444
|
|
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=89.89 Aligned_cols=61 Identities=26% Similarity=0.382 Sum_probs=55.3
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHh
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLD 162 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~ 162 (523)
|.+||+||| +|+||.- .-|||++++|+|||.|+++.+.+ .+++|++++..+...+++|+.+
T Consensus 1 m~~iiMAGG--rGtRmg~----~EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~tp~t~~~~~~ 61 (177)
T COG2266 1 MMAIIMAGG--RGTRMGR----PEKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHTPKTKEYLES 61 (177)
T ss_pred CceEEecCC--cccccCC----CcCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCCHhHHHHHHh
Confidence 468999999 9999982 26999999999999999999997 5899999999988899999987
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=104.44 Aligned_cols=99 Identities=27% Similarity=0.362 Sum_probs=76.5
Q ss_pred ECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCC
Q psy17795 397 VHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPP 475 (523)
Q Consensus 397 I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~ 475 (523)
+.. +.|.++++||++|.|++++.|+. ++||++|.||+++.|.+|+|+++|.|++++.|.++ .|+++|
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~s-----------Ii~~~~ 320 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDS-----------IIGENC 320 (358)
T ss_pred ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeee-----------EEcCCc
Confidence 444 66778888888888888888865 88999999999999999999999999999999874 566777
Q ss_pred eecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCC
Q psy17795 476 LFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTR 515 (523)
Q Consensus 476 ~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~ 515 (523)
.||. . . .+|+ +.+|.++.+ .+.++++++.+..
T Consensus 321 ~ig~-~-----~-~i~d-~~~g~~~~i~~g~~~~~~~~~~~ 353 (358)
T COG1208 321 KIGA-S-----L-IIGD-VVIGINSEILPGVVVGPGSVVES 353 (358)
T ss_pred EECC-c-----e-eecc-eEecCceEEcCceEeCCCccccC
Confidence 7776 1 1 2677 777777777 5555555555543
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-08 Score=98.86 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=45.7
Q ss_pred CceEecCcEECCCCEECC--CCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC
Q psy17795 382 QCKTIGDVYIHSSASVHP--TAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP 459 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~ 459 (523)
+..|++.+.||+++.|++ +++|+++++||++|.|..+++|+.+ +...+. .+++||++|.||.|+.|.+
T Consensus 205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~----g~~~g~----r~p~IGd~V~IGagA~IlG-- 274 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGT----GKETGD----RHPKIGDGALLGACVTILG-- 274 (355)
T ss_pred CcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCc----CCcCCC----CCcEECCCCEEcCCCEEeC--
Confidence 455666666666666654 4555555555555555555555321 000000 1356667777777776654
Q ss_pred CCCCCCCCceecCCCCeecCCCee
Q psy17795 460 CDPNPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 460 ~~~~~~~~~v~I~~~~~ig~~~~i 483 (523)
+++||+++.||++++|
T Consensus 275 --------~V~IGd~aiIGAGSVV 290 (355)
T PLN02739 275 --------NISIGAGAMVAAGSLV 290 (355)
T ss_pred --------CeEECCCCEECCCCEE
Confidence 3566666666666543
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-08 Score=77.82 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=22.1
Q ss_pred ceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 468 FAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 468 ~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
.+.|+++++++.++.+.++ +.||+++.|+++++|
T Consensus 44 ~~~ig~~~~v~~~~~i~~~-~~ig~~~~i~~~s~v 77 (78)
T cd00208 44 PTIIGDNVEIGANAVIHGG-VKIGDNAVIGAGAVV 77 (78)
T ss_pred CcEECCCcEECCCCEEeCC-CEECCCCEECcCcEe
Confidence 3555666666656655555 667888888877765
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.9e-08 Score=90.80 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=45.9
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS 153 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~ 153 (523)
.+|||||| +|+||+. ||+|++++|+|||+|+++.+.+. ++++++||+++..
T Consensus 2 ~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~-~~~~i~vv~~~~~ 52 (190)
T TIGR03202 2 VAIYLAAG--QSRRMGE-----NKLALPLGETTLGSASLKTALSS-RLSKVIVVIGEKY 52 (190)
T ss_pred eEEEEcCC--ccccCCC-----CceeceeCCccHHHHHHHHHHhC-CCCcEEEEeCCcc
Confidence 48999999 9999987 89999999999999999888774 8999999998754
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.7e-08 Score=94.96 Aligned_cols=90 Identities=13% Similarity=0.226 Sum_probs=60.0
Q ss_pred CceEecCcEECCCCEECCCCEECCCc-EECCCCEECCCCEEee-eEECCCCEECCCCEEec---------eEECCCCEEC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNV-SIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLN---------SIVGRNSKVG 450 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~-~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~---------~iIg~~~~Ig 450 (523)
++.+.-.++|++++.|.+.+.|..++ +||+. .| ++.|.+ ++||++|.|+.++.|.+ +.||++|.||
T Consensus 159 ~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IG 235 (319)
T TIGR03535 159 ADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLG 235 (319)
T ss_pred CceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEEC
Confidence 34445555666666666666665565 46654 44 345533 67777777777777543 7888888888
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
.+|.| + +.||++|.||++++|..|
T Consensus 236 agA~I-G-----------I~IGd~~VVGAGaVVtkg 259 (319)
T TIGR03535 236 ANSGL-G-----------ISLGDDCVVEAGLYVTAG 259 (319)
T ss_pred CCCEE-C-----------eEECCCCEECCCCEEeCC
Confidence 88888 4 578888877777776666
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-08 Score=100.50 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=65.0
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~ 458 (523)
+-.|...+..-|.+.+..++.+ .++.|+.||+|.. .|.+|+|+.++.|+.+|.|++|+|+.+|.||++|.|...
T Consensus 273 ~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~a 346 (393)
T COG0448 273 NWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRA 346 (393)
T ss_pred CCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEE
Confidence 4456666667778888888877 8999999999975 999999999999999999999999999999999999863
|
|
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-08 Score=101.27 Aligned_cols=81 Identities=21% Similarity=0.220 Sum_probs=60.9
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeC---CcchHHHHHHHHhcC-------CCccEEEEEccCChHHHHHHHHhhhh
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVA---GLPMIQHHIEACVQV-------PNLKEIIILGYYPSADLQKFVLDMVQ 165 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~---g~pli~~~l~~~~~~-------~g~~~i~vv~~~~~~~i~~~l~~~~~ 165 (523)
+|+|||| .||||+- ..||+|+||+ |+|+|++.++++..+ .++..+++...+..+++++||++...
T Consensus 3 ~viLaGG--~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~ 77 (266)
T cd04180 3 VVLLAGG--LGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQ 77 (266)
T ss_pred EEEECCC--CccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCC
Confidence 7899999 9999964 8999999999 999999999999752 35667777777788899999998431
Q ss_pred ccCeeEEEEecccccc
Q psy17795 166 EYKINIRYLQEFWDII 181 (523)
Q Consensus 166 ~~~~~i~~~~~~~~~g 181 (523)
..+.-+.|.++..|..
T Consensus 78 ~~~~v~~f~Q~~~P~~ 93 (266)
T cd04180 78 KNSYVITFMQGKLPLK 93 (266)
T ss_pred CCCceEEEEeCCceEE
Confidence 2232233444445544
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.6e-08 Score=90.76 Aligned_cols=55 Identities=29% Similarity=0.306 Sum_probs=48.5
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS 153 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~ 153 (523)
||.|.+|||||| .|+||+ ..||+|++++|+|||+|+++.+. +++++|+|+++...
T Consensus 1 ~~~~~~vILA~G--~s~Rm~----~~~K~ll~~~g~~ll~~~i~~l~--~~~~~i~vv~~~~~ 55 (193)
T PRK00317 1 MPPITGVILAGG--RSRRMG----GVDKGLQELNGKPLIQHVIERLA--PQVDEIVINANRNL 55 (193)
T ss_pred CCCceEEEEcCC--CcccCC----CCCCceeEECCEEHHHHHHHHHh--hhCCEEEEECCCCh
Confidence 577899999999 999995 25899999999999999999998 37999999987643
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-08 Score=104.32 Aligned_cols=54 Identities=15% Similarity=0.320 Sum_probs=50.7
Q ss_pred ECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 403 VGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 403 I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+.++++||++|.|+ ++.|.+|+||++|.|+++|+|.+|+|+++|.||++|.|.+
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~ 365 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR 365 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe
Confidence 34679999999998 9999999999999999999999999999999999999976
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-08 Score=94.19 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=74.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe---------ceEECCCCEEC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL---------NSIVGRNSKVG 450 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~---------~~iIg~~~~Ig 450 (523)
|++.+.-.++|+++++|.+.+.|.=++.++++|.|..+++++. .+||+||.||.++.|. -++|++||.||
T Consensus 113 p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliG 192 (271)
T COG2171 113 PGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIG 192 (271)
T ss_pred CccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEec
Confidence 5778888888888888888888877888999999998888875 6899999999999995 47899999999
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
+++.+.- .+.+|++|.|+++.+|.++
T Consensus 193 Ans~~ve----------GV~vGdg~VV~aGv~I~~~ 218 (271)
T COG2171 193 ANSEVVE----------GVIVGDGCVVAAGVFITQD 218 (271)
T ss_pred cccceEe----------eeEeCCCcEEecceEEeCC
Confidence 9985532 2556666555554444443
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-08 Score=89.26 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=24.6
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
.++||++|.||++|.|.+ .++||+++.||++++|.++
T Consensus 113 ~~~Ig~~v~Ig~~a~I~~----------~v~IG~~~~Iga~s~V~~d 149 (162)
T TIGR01172 113 HPTVGEGVMIGAGAKVLG----------NIEVGENAKIGANSVVLKD 149 (162)
T ss_pred CCEECCCcEEcCCCEEEC----------CcEECCCCEECCCCEECCC
Confidence 467777777777777765 3567777777777654443
|
Cysteine biosynthesis |
| >KOG3121|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-08 Score=86.90 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=47.2
Q ss_pred EECCCCEECCCCEEC---CCcEECCCCEECCCCEEee-------------eEECCCCEECCCCEEeceEECCCCEECCCc
Q psy17795 390 YIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKE-------------SIILQGASIGNHSLVLNSIVGRNSKVGNWS 453 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~-------------s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~ 453 (523)
.+...+.|.++++|. .++.||..|+++++++|+. ..||+.+.|++.|++..+.||..+.+|.++
T Consensus 35 ~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gkna 114 (184)
T KOG3121|consen 35 LLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNA 114 (184)
T ss_pred EEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccce
Confidence 334444455555554 5788888888888888875 467777777777777777777777777766
Q ss_pred EEcC
Q psy17795 454 RVEG 457 (523)
Q Consensus 454 ~i~~ 457 (523)
+|+.
T Consensus 115 viGr 118 (184)
T KOG3121|consen 115 VIGR 118 (184)
T ss_pred eEcC
Confidence 6654
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.1e-08 Score=97.41 Aligned_cols=77 Identities=27% Similarity=0.321 Sum_probs=64.3
Q ss_pred CCceEecCcEECC--CCEECCCCEECCCcEECCCCEECCCC---EEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcE
Q psy17795 381 SQCKTIGDVYIHS--SASVHPTAIVGPNVSIDDGAVIGPGV---RIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSR 454 (523)
Q Consensus 381 ~~~~i~~~~~i~~--~~~I~~~~~I~~~~~Ig~~~~I~~~~---~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~ 454 (523)
+++.|+.+++|.. +++|+++++||+++.|+.+|+||... ..++++||++|.||.++.|. ++.||+++.||++++
T Consensus 231 p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSV 310 (360)
T PLN02357 231 PGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSV 310 (360)
T ss_pred CCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECCCCE
Confidence 6888999888886 68899999999999999999997532 13458899999999998885 889999999999998
Q ss_pred EcC
Q psy17795 455 VEG 457 (523)
Q Consensus 455 i~~ 457 (523)
|..
T Consensus 311 V~~ 313 (360)
T PLN02357 311 VLK 313 (360)
T ss_pred ECc
Confidence 865
|
|
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.7e-08 Score=88.94 Aligned_cols=52 Identities=23% Similarity=0.357 Sum_probs=46.6
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHH
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSAD 155 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~ 155 (523)
.+|||||| .|+||++ ||+|++++|+|||+|+++.+.+. +++|+|++++....
T Consensus 2 ~~iILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~ 53 (181)
T cd02503 2 TGVILAGG--KSRRMGG-----DKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER 53 (181)
T ss_pred cEEEECCC--ccccCCC-----CceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH
Confidence 58999999 9999986 99999999999999999999974 88999999876533
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.3e-07 Score=92.98 Aligned_cols=192 Identities=16% Similarity=0.163 Sum_probs=115.9
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC---CcchHHHHHHHHhcCC-----------CccEEEEEcc-CChHHHH
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA---GLPMIQHHIEACVQVP-----------NLKEIIILGY-YPSADLQ 157 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~---g~pli~~~l~~~~~~~-----------g~~~i~vv~~-~~~~~i~ 157 (523)
++.+|||||| +||||. ...||+|+|++ |+|++++.++.+.... .+. ++|.++ +..++++
T Consensus 15 ~va~viLaGG--~GTRLg---~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip-~~imtS~~t~~~t~ 88 (323)
T cd04193 15 KVAVLLLAGG--QGTRLG---FDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIP-WYIMTSEATHEETR 88 (323)
T ss_pred CEEEEEECCC--cccccC---CCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCce-EEEEcChhHhHHHH
Confidence 4568999999 999994 58999999998 6999999999998641 233 446666 6778999
Q ss_pred HHHHhhhhccCe---eEEEEeccc-cc-c-hhhhhc--cccccccc-CCCchhHHH-------Hhhc-ccCCcceEEEEc
Q psy17795 158 KFVLDMVQEYKI---NIRYLQEFW-DI-I-HQQICI--SLYWTWYR-NTRSTYGIY-------RNSL-HWVQEAVYFTLE 220 (523)
Q Consensus 158 ~~l~~~~~~~~~---~i~~~~~~~-~~-g-~~~~~~--~~~~~~~~-g~~ta~al~-------~~~i-~~~~d~~~Lvl~ 220 (523)
+||.+. ..+|+ ++.+..|.. |. . +.+... ...-.|+. | .++-.. .+.+ ...-++ +.+.+
T Consensus 89 ~~~~~~-~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~G--hG~i~~aL~~sG~l~~l~~~G~~y-i~v~~ 164 (323)
T cd04193 89 KFFKEN-NYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNG--NGGLYKALQTAGILEDMKKRGIKY-IHVYS 164 (323)
T ss_pred HHHHhC-CcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCC--chHHHHHHHHCChHHHHHhCCCEE-EEEEe
Confidence 999983 44565 677666532 10 0 000000 01124565 4 444433 2222 223455 55555
Q ss_pred ---c---chHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE-cCCCCcEEEEeecCCCc----------ccceee
Q psy17795 221 ---I---RSDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR-KQQTSEISHYVEKPSTF----------VSTLVN 282 (523)
Q Consensus 221 ---i---~~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~-d~~~~~V~~~~ekp~~~----------~~~l~~ 282 (523)
+ ..|. ++-++.+.+ +++++-+.+.... ..+-|.+.. |.. -+|+++.|-|.+. ..+..+
T Consensus 165 vDN~L~~~~Dp~~lG~~~~~~--~~~~~kvv~k~~~-~ekvG~l~~~~g~-~~vvEysel~~~~~~~~~~~g~l~f~~~n 240 (323)
T cd04193 165 VDNILVKVADPVFIGFCISKG--ADVGAKVVRKRYP-TEKVGVVVLVDGK-PQVVEYSEISDELAEKRDADGELQYNAGN 240 (323)
T ss_pred cCcccccccCHHHhHHHHHcC--CceEEEEEECCCC-CCceeEEEEECCe-EEEEEeecCCHHHHhccCcCCcEecccch
Confidence 2 3565 888888888 8877766543322 245676654 432 3577777765421 112334
Q ss_pred eeEEEeeHHHHHHHHH
Q psy17795 283 CGVYLFSLDIFQNIAA 298 (523)
Q Consensus 283 ~Giyif~~~il~~l~~ 298 (523)
+.+.+|+-+.++.+.+
T Consensus 241 i~~~~fsl~fl~~~~~ 256 (323)
T cd04193 241 IANHFFSLDFLEKAAE 256 (323)
T ss_pred HhhheeCHHHHHHHHh
Confidence 4566777777665543
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=6e-08 Score=102.84 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=49.2
Q ss_pred CCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 405 PNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 405 ~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
.+++||++|+| ++|.|.+|+||++|.||++|.|.+|+|+++|.||++|.|.+
T Consensus 326 ~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~ 377 (425)
T PRK00725 326 INSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRR 377 (425)
T ss_pred EeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEee
Confidence 58999999999 79999999999999999999999999999999999999976
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-07 Score=86.23 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=8.7
Q ss_pred ceEECCCCEECCCcEEc
Q psy17795 440 NSIVGRNSKVGNWSRVE 456 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~ 456 (523)
.+.||++|.||.+|.|.
T Consensus 118 ~v~IG~~~~Ig~~a~I~ 134 (169)
T cd03357 118 PITIGDNVWIGGGVIIL 134 (169)
T ss_pred CcEeCCCEEECCCCEEe
Confidence 44555555555555553
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.6e-08 Score=99.51 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=60.2
Q ss_pred CceEecCcEECCCCEECCCCEECC----CcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGP----NVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~----~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
++.+++.+.+ +++.|+++|.|++ +++||++|.|+++|.|.+|+|++++.||++|.|.+|+||+++.|++++.|++
T Consensus 283 ~~~i~~~~~i-~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 283 AKFVDSDAQV-VDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred ceEecCCCEE-ECCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 3444444332 2344555555554 8999999999999999999999999999999999999999999999999863
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-07 Score=83.89 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=32.6
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
...+.||++|+||.++.+.++ +.||++|+||++++|..
T Consensus 71 ~~~~~Ig~~~~Ig~~~~i~~g-v~Ig~~~vIgags~V~~ 108 (145)
T cd03349 71 KGDVIIGNDVWIGHGATILPG-VTIGDGAVIAAGAVVTK 108 (145)
T ss_pred cCCcEECCCCEECCCCEEeCC-CEECCCCEECCCCEEcc
Confidence 356889999999999999998 77799999999999844
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.7e-07 Score=84.64 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=46.1
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCC-cchHHHHHHHHhcCCCccEEEEEccC
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYY 151 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g-~pli~~~l~~~~~~~g~~~i~vv~~~ 151 (523)
.+.+.+|||||| +|+||+. +|+|++++| +|+|+|+++.+.+. +++|+|++++
T Consensus 6 ~~~i~~vILAgG--~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~ 58 (196)
T PRK00560 6 IDNIPCVILAGG--KSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKD 58 (196)
T ss_pred ccCceEEEECCc--ccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECc
Confidence 345679999999 9999976 999999999 99999999999864 7899988875
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=98.75 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=62.5
Q ss_pred CceEecCcEECCCCEECCCCEEC---CCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~ 458 (523)
.+.|++++.| +++.|+++|.|+ .+++|+++|.|+++|.|.+|+|+++|.|++++.|.+|+||+++.|++++.+.+.
T Consensus 278 p~~i~~~~~i-~~~~Ig~~~~i~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 278 PTYYAENSKV-ENSLVANGCIIEGKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred CcEEcCCCEE-EEeEEcCCCEEeeEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence 3444444444 344555555554 578999999999999999999999999999999999999999999999999775
Q ss_pred C
Q psy17795 459 P 459 (523)
Q Consensus 459 ~ 459 (523)
.
T Consensus 357 ~ 357 (369)
T TIGR02092 357 S 357 (369)
T ss_pred C
Confidence 3
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=97.68 Aligned_cols=74 Identities=23% Similarity=0.449 Sum_probs=55.0
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCC-CEEeceEECCCCEECCCcEEcC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNH-SLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~-~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
.+.|.+++.|+++|.|+ ++.|+++++||++|+|+ ++.|.+|+|++++.|+.+ +++.+++|++++.|++++.+.+
T Consensus 265 ~~~i~~~~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 265 NSVIRGPAVIGEDCIIE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPG 339 (353)
T ss_pred CCEEECCcEECCCCEEc-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCccccc
Confidence 34455666666666665 44566777777777776 577778899999999887 4888899999999998888864
|
Alternate name: dTDP-D-glucose synthase |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-07 Score=85.47 Aligned_cols=34 Identities=6% Similarity=-0.026 Sum_probs=15.9
Q ss_pred CCcEECCCCEECCCCEEee---eEECCCCEECCCCEE
Q psy17795 405 PNVSIDDGAVIGPGVRIKE---SIILQGASIGNHSLV 438 (523)
Q Consensus 405 ~~~~Ig~~~~I~~~~~I~~---s~Ig~~~~Ig~~~~I 438 (523)
.++.||+++.|+.+|+|.+ ..||++|.|+++|+|
T Consensus 72 ~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i 108 (183)
T PRK10092 72 YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHI 108 (183)
T ss_pred CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEE
Confidence 3444444444444443322 245555555555555
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.8e-07 Score=86.61 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=33.6
Q ss_pred CceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 467 AFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 467 ~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
+.++||+++|||++++|.+| +.||+|++||+++++..
T Consensus 123 ~~v~IG~~vwIG~~a~IlpG-V~IG~gavigagsVVtk 159 (190)
T COG0110 123 GPVTIGEDVWIGAGAVILPG-VTIGEGAVIGAGSVVTK 159 (190)
T ss_pred CCeEECCCeEEcCccEECCC-EEECCCcEEeeCCEEeC
Confidence 46899999999999999999 67799999999999944
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-07 Score=85.12 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=45.8
Q ss_pred CceEecCcEECCCCEECCC--CEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC
Q psy17795 382 QCKTIGDVYIHSSASVHPT--AIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP 459 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~--~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~ 459 (523)
+..|++.+.||++.+|+.+ .+|++.+.||++|.|..+++|+.+ -. .+--.+-.||++|.||+||.|-|
T Consensus 67 gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgt-----g~---~~g~RhPtIg~~V~IGagAkILG-- 136 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGT-----GK---ESGKRHPTIGNGVYIGAGAKILG-- 136 (194)
T ss_pred ceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCC-----CC---cCCCCCCccCCCeEECCCCEEEc--
Confidence 5567777777777777654 345555555555555555555431 00 00011345566666666666654
Q ss_pred CCCCCCCCceecCCCCeecCCCeecC
Q psy17795 460 CDPNPNKAFAKMDNPPLFNSNGKLNP 485 (523)
Q Consensus 460 ~~~~~~~~~v~I~~~~~ig~~~~i~~ 485 (523)
.+.||+++.||++++|..
T Consensus 137 --------~I~IGd~akIGA~sVVlk 154 (194)
T COG1045 137 --------NIEIGDNAKIGAGSVVLK 154 (194)
T ss_pred --------ceEECCCCEECCCceEcc
Confidence 255566666665554443
|
|
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.4e-07 Score=84.24 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=44.7
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS 153 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~ 153 (523)
.+|||||| .|+||+. .||+|++++|+|||+|+++.+.. .+++|+|++.+..
T Consensus 2 ~~iILAgG--~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~ 52 (186)
T TIGR02665 2 SGVILAGG--RARRMGG----RDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNP 52 (186)
T ss_pred eEEEEcCC--ccccCCC----CCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCH
Confidence 48999999 9999973 49999999999999999999974 6899999987643
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-07 Score=91.15 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
..+.+||++++||++++|..+ ++||++|+||+|++|.
T Consensus 210 ~r~piIGd~V~IGagA~Ilgg-i~IGd~a~IGAgSVV~ 246 (294)
T PLN02694 210 DRHPKIGDGVLIGAGATILGN-VKIGEGAKIGAGSVVL 246 (294)
T ss_pred CCccEECCCeEECCeeEECCC-CEECCCCEECCCCEEC
Confidence 346788999999999999888 6779999999999884
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-07 Score=77.28 Aligned_cols=76 Identities=25% Similarity=0.369 Sum_probs=50.1
Q ss_pred CceEecCcEECC--CCEECCCCEECCCcEECCCCEECCCCE---EeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q psy17795 382 QCKTIGDVYIHS--SASVHPTAIVGPNVSIDDGAVIGPGVR---IKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 382 ~~~i~~~~~i~~--~~~I~~~~~I~~~~~Ig~~~~I~~~~~---I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i 455 (523)
.+.|+++++|+. .+.|++++.|++++.|++++.|+.++. ++.++||++|.|+.++.+. .+.||+++.|++++.|
T Consensus 8 ~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i 87 (101)
T cd03354 8 GAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVV 87 (101)
T ss_pred CCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEE
Confidence 344444454443 334455555555555555555555553 4556799999999988887 4888888888888888
Q ss_pred cC
Q psy17795 456 EG 457 (523)
Q Consensus 456 ~~ 457 (523)
..
T Consensus 88 ~~ 89 (101)
T cd03354 88 TK 89 (101)
T ss_pred Cc
Confidence 64
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.3e-07 Score=75.41 Aligned_cols=84 Identities=12% Similarity=0.117 Sum_probs=41.6
Q ss_pred CcEECCCCEECCCCEEC--CCcEECCCCEECCCCEEeeeEECCCCEECCCCEE-eceEECCCCEECCCcEEcCCCCCCCC
Q psy17795 388 DVYIHSSASVHPTAIVG--PNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV-LNSIVGRNSKVGNWSRVEGTPCDPNP 464 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I-~~~iIg~~~~Ig~~~~i~~~~~~~~~ 464 (523)
+..||+++.|++++.|. +.+.||++|.|++++.|... .++........+ ..+.||++|.||.++.|..
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~--~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~------- 73 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTG--SHDYRSPAFPLITAPIVIGDGAWVAAEAFVGP------- 73 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecC--CCCCCcCccceecCCEEECCCCEECCCCEECC-------
Confidence 34556666666666653 45677777777777766420 000111111111 2455555555555555543
Q ss_pred CCCceecCCCCeecCCCee
Q psy17795 465 NKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 465 ~~~~v~I~~~~~ig~~~~i 483 (523)
.++|++++.|++++.+
T Consensus 74 ---g~~Ig~~~~i~~gs~v 89 (107)
T cd05825 74 ---GVTIGEGAVVGARSVV 89 (107)
T ss_pred ---CCEECCCCEECCCCEE
Confidence 2445555555555433
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-07 Score=84.71 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=47.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCC
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYP 152 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~ 152 (523)
.-+|||||| +|+||+. ||.|+|+.|+|++.++++...+. +++++++|+++.
T Consensus 6 v~~VvLAAG--rssRmG~-----~KlLap~~g~plv~~~~~~a~~a-~~~~vivV~g~~ 56 (199)
T COG2068 6 VAAVVLAAG--RSSRMGQ-----PKLLAPLDGKPLVRASAETALSA-GLDRVIVVTGHR 56 (199)
T ss_pred eEEEEEccc--ccccCCC-----cceecccCCCcHHHHHHHHHHhc-CCCeEEEEeCcc
Confidence 458999999 9999996 99999999999999999999985 999999999986
|
|
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.7e-07 Score=85.38 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=45.2
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY 151 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~ 151 (523)
|.+.+|||||| +|+||+. +|+|++++|+|||+|+++.+.. .+++|+|++++
T Consensus 6 ~~~~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~--~~~~ivvv~~~ 56 (200)
T PRK02726 6 NNLVALILAGG--KSSRMGQ-----DKALLPWQGVPLLQRVARIAAA--CADEVYIITPW 56 (200)
T ss_pred CCceEEEEcCC--CcccCCC-----CceeeEECCEeHHHHHHHHHHh--hCCEEEEECCC
Confidence 45679999999 9999975 8999999999999999999985 47899998864
|
|
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.9e-05 Score=79.56 Aligned_cols=192 Identities=14% Similarity=0.125 Sum_probs=117.5
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC-CcchHHHHHHHHhcC---CCcc-EEEEEccC-ChHHHHHHHHhhhhc
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA-GLPMIQHHIEACVQV---PNLK-EIIILGYY-PSADLQKFVLDMVQE 166 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~-g~pli~~~l~~~~~~---~g~~-~i~vv~~~-~~~~i~~~l~~~~~~ 166 (523)
+.-+|.|||| .||||+- .-||.++++. |+++++.+++++... .|.+ ..+|.+.+ ..++..++|+++ ..
T Consensus 79 k~avlkLnGG--lGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~-~~ 152 (469)
T PLN02474 79 KLVVLKLNGG--LGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKY-TN 152 (469)
T ss_pred cEEEEEecCC--cccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHc-CC
Confidence 3457888888 9999998 8899999995 689988888877543 2433 24566665 667899999884 33
Q ss_pred cCeeEEEEeccc-cc----chhhhh---ccccccccc-CCCchhHHH-------Hhh-cccCCcceEEEEc-----cchH
Q psy17795 167 YKINIRYLQEFW-DI----IHQQIC---ISLYWTWYR-NTRSTYGIY-------RNS-LHWVQEAVYFTLE-----IRSD 224 (523)
Q Consensus 167 ~~~~i~~~~~~~-~~----g~~~~~---~~~~~~~~~-g~~ta~al~-------~~~-i~~~~d~~~Lvl~-----i~~D 224 (523)
++.++.+..|.. |. |-..++ -.....||. | .++... .+. +...-++ +.+.| -..|
T Consensus 153 ~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~G--hGd~y~aL~~sG~Ld~l~~~G~ey-ifv~nvDNLga~vD 229 (469)
T PLN02474 153 SNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPG--HGDVFPSLMNSGKLDALLSQGKEY-VFIANSDNLGAIVD 229 (469)
T ss_pred CccceEEEecCceeeEecCCCCcccccCCCCcceeeeCC--CchHHHHHHhCChHHHHHhcCCEE-EEEEecCccccccC
Confidence 455666555421 11 000000 011234777 4 444433 222 2233456 66655 2346
Q ss_pred H-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE-cCCCCcEEEEeecCCC--------cccceeeeeEEEeeHHHHH
Q psy17795 225 V-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR-KQQTSEISHYVEKPST--------FVSTLVNCGVYLFSLDIFQ 294 (523)
Q Consensus 225 ~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~-d~~~~~V~~~~ekp~~--------~~~~l~~~Giyif~~~il~ 294 (523)
. ++.++...+ +++++=+.+-...+ .+-|.+.. |.. -+|+++.+-|++ ....+.+++.+.|+-+.++
T Consensus 230 p~~lg~~~~~~--~e~~~ev~~Kt~~d-~kgG~l~~~dgk-~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~ 305 (469)
T PLN02474 230 LKILNHLIQNK--NEYCMEVTPKTLAD-VKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIK 305 (469)
T ss_pred HHHHHHHHhcC--CceEEEEeecCCCC-CCccEEEEECCE-EEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHH
Confidence 6 888988888 88776655432222 23466553 322 358888887653 2356789999999988877
Q ss_pred HHH
Q psy17795 295 NIA 297 (523)
Q Consensus 295 ~l~ 297 (523)
.+.
T Consensus 306 ~~~ 308 (469)
T PLN02474 306 RLV 308 (469)
T ss_pred HHh
Confidence 664
|
|
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.8e-07 Score=81.85 Aligned_cols=169 Identities=13% Similarity=0.076 Sum_probs=103.7
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCee
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~ 170 (523)
||+--|||+|-| -.+|. | .|-+.+++|+|||.|+++++.++.-+++|+|-+. .+.|.+.-. .+|.+
T Consensus 1 ~~~~iAiIpAR~--gSKgI-~-----~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsD--s~~Il~~A~----~ygak 66 (228)
T COG1083 1 MMKNIAIIPARG--GSKGI-K-----NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSD--SEEILEEAK----KYGAK 66 (228)
T ss_pred CcceEEEEeccC--CCCcC-C-----ccchHHhCCcchHHHHHHHHhcCCccceEEEcCC--cHHHHHHHH----HhCcc
Confidence 355568999998 55555 4 5999999999999999999999878888887764 345544433 46777
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cc--hHH--HHHHHHhcCCcceEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IR--SDV--VILMHSLYSMAILVT 240 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~--~D~--l~~~h~~~~~~~~~t 240 (523)
+.+.++.+...+ . |+|-++++ .+......+. ++++. +. .++ ..+.+.+.+ .+..
T Consensus 67 ~~~~Rp~~LA~D----------~---ast~~~~lh~le~~~~~~~~-~~lLq~TsPLl~~~~ik~A~e~f~~~~--~~sl 130 (228)
T COG1083 67 VFLKRPKELASD----------R---ASTIDAALHALESFNIDEDT-LILLQPTSPLLTSLHIKEAFEKFLNNQ--YDSL 130 (228)
T ss_pred ccccCChhhccC----------c---hhHHHHHHHHHHHhccccCe-eEEeccCccccchhHHHHHHHHHhcCC--Ccce
Confidence 766666554321 1 11344444 5555533343 55554 33 334 444455555 5555
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCC-------CcccceeeeeEEEeeHHHHH
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISHYVEKPS-------TFVSTLVNCGVYLFSLDIFQ 294 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~-------~~~~~l~~~Giyif~~~il~ 294 (523)
+.+.+... ..|-.+. +.+ |.+..+.|.|. .+.....++.+|+++.+.|.
T Consensus 131 ~sa~e~e~---~p~k~f~-~~~-~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~ 186 (228)
T COG1083 131 FSAVECEH---HPYKAFS-LNN-GEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALL 186 (228)
T ss_pred EEEeeccc---chHHHHH-hcC-CceeecccCCccccccccchhhhhhcCcEEEehHHHHh
Confidence 65565532 2222222 223 67777777652 23455678899999998764
|
|
| >KOG4750|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.8e-07 Score=83.36 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=45.4
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
-++||++|.|.+++.+++.. ......+-+||++++||.+++|.+++ .||+|++|++|++|
T Consensus 174 TAvvg~~vSilH~Vtlggtg--k~~gdrhP~Igd~vliGaGvtILgnV-~IGegavIaAGsvV 233 (269)
T KOG4750|consen 174 TAVVGDNVSILHPVTLGGTG--KGSGDRHPKIGDNVLIGAGVTILGNV-TIGEGAVIAAGSVV 233 (269)
T ss_pred eeEeccceeeecceeecccc--ccccccCCcccCCeEEccccEEeCCe-eECCCcEEeccceE
Confidence 45666777777777776542 22334455899999999999999994 55999999999988
|
|
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.8e-06 Score=87.21 Aligned_cols=190 Identities=14% Similarity=0.134 Sum_probs=113.7
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC---CcchHHHHHHHHhcC-------------CCccEEEEEccCChHHH
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA---GLPMIQHHIEACVQV-------------PNLKEIIILGYYPSADL 156 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~---g~pli~~~l~~~~~~-------------~g~~~i~vv~~~~~~~i 156 (523)
++.+|||||| .||||+. ..||+|+||+ |+|+++++++++... ..+.-+++...+..+.+
T Consensus 106 kvavViLAGG--~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 106 EVAVLILAGG--LGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CeEEEEECCC--CcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 4779999999 9999975 8999999994 899999999999763 12444555556788899
Q ss_pred HHHHHhhhhccCe---eEEEEeccc-cc-chh-hhhc---cccccccc-CCCchhHHH-------Hhhcc-cCCcceEEE
Q psy17795 157 QKFVLDMVQEYKI---NIRYLQEFW-DI-IHQ-QICI---SLYWTWYR-NTRSTYGIY-------RNSLH-WVQEAVYFT 218 (523)
Q Consensus 157 ~~~l~~~~~~~~~---~i~~~~~~~-~~-g~~-~~~~---~~~~~~~~-g~~ta~al~-------~~~i~-~~~d~~~Lv 218 (523)
++|+.+. ..+|+ +|.+..|.. |. ... ...+ ....-|+. | .++-.. .+.+. ..-++ +.+
T Consensus 181 ~~~f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~G--nGgiy~aL~~sG~Ld~l~~~Gi~y-i~v 256 (482)
T PTZ00339 181 RQFLEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGG--NGDVFKALAKCSELMDIVRKGIKY-VQV 256 (482)
T ss_pred HHHHHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCC--CcHHHHHHHHCCcHHHHHHcCCEE-EEE
Confidence 9999873 33443 355554421 11 000 0000 01124554 4 444433 22222 23455 555
Q ss_pred Ec---c---chHH-HHHHHHhcCCcc-eEEEEEEeeCCCCCcceeEEEE-cCCCCcEEEEeecCCC-----------ccc
Q psy17795 219 LE---I---RSDV-VILMHSLYSMAI-LVTVMATEATRQQSVYYGCIVR-KQQTSEISHYVEKPST-----------FVS 278 (523)
Q Consensus 219 l~---i---~~D~-l~~~h~~~~~~~-~~tv~~~~~~~~~~~~~g~v~~-d~~~~~V~~~~ekp~~-----------~~~ 278 (523)
.+ + ..|. ++-++...+ + ++.-.+.+.. ....-|.+.. |.. -.|+++.|-++. ...
T Consensus 257 ~~vDN~L~k~~DP~flG~~~~~~--~~~~~~kvvk~~--~~EkvG~~~~~~g~-~~vvEYsEi~~~~~~~~~~~~g~l~f 331 (482)
T PTZ00339 257 ISIDNILAKVLDPEFIGLASSFP--AHDVLNKCVKRE--DDESVGVFCLKDYE-WQVVEYTEINERILNNDELLTGELAF 331 (482)
T ss_pred EecCcccccccCHHHhHHHHHCC--chhheeeeecCC--CCCceeEEEEeCCc-ccEEEEeccChhhhhcccccCCeecc
Confidence 44 2 3565 788888776 5 4433333322 2245677654 322 367888774321 113
Q ss_pred ceeeeeEEEeeHHHHHHH
Q psy17795 279 TLVNCGVYLFSLDIFQNI 296 (523)
Q Consensus 279 ~l~~~Giyif~~~il~~l 296 (523)
...++..++|+-++++.+
T Consensus 332 ~~gnI~~h~fsl~fl~~~ 349 (482)
T PTZ00339 332 NYGNICSHIFSLDFLKKV 349 (482)
T ss_pred cccceEEEEEEHHHHHHH
Confidence 456889999999988765
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=74.36 Aligned_cols=74 Identities=24% Similarity=0.284 Sum_probs=54.0
Q ss_pred ceEecCcEECCCCEECC--CCEECCCcEECCCCEECCC--------------CEEeeeEECCCCEECCCCEEe-ceEECC
Q psy17795 383 CKTIGDVYIHSSASVHP--TAIVGPNVSIDDGAVIGPG--------------VRIKESIILQGASIGNHSLVL-NSIVGR 445 (523)
Q Consensus 383 ~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~--------------~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~ 445 (523)
..|++++.|++++.|.+ ++.|++++.|+++|.|... .....+.||++|.|++++.|. ++.|++
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~ 81 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGD 81 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECC
Confidence 35777888888888877 7888888888888888653 233457777777777777763 666777
Q ss_pred CCEECCCcEEc
Q psy17795 446 NSKVGNWSRVE 456 (523)
Q Consensus 446 ~~~Ig~~~~i~ 456 (523)
++.|++++.+.
T Consensus 82 ~~~i~~~~~v~ 92 (109)
T cd04647 82 GAVVGAGSVVT 92 (109)
T ss_pred CCEECCCCEEe
Confidence 77776666664
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-06 Score=90.08 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=47.8
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHH
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQK 158 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~ 158 (523)
++.+|||||| +|+||+ ..||+|++++|+|||+|+++.+.. .+++|+|++....+.+.+
T Consensus 5 ~i~~VILAgG--~s~Rmg----g~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~~~~~~ 62 (366)
T PRK14489 5 QIAGVILAGG--LSRRMN----GRDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDPARYQD 62 (366)
T ss_pred CceEEEEcCC--cccCCC----CCCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCHHHHHh
Confidence 4679999999 999995 248999999999999999999984 589999877655444443
|
|
| >KOG4042|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=2e-07 Score=80.81 Aligned_cols=76 Identities=21% Similarity=0.190 Sum_probs=63.4
Q ss_pred CceEecCcEECCCCEECCCCEEC---CCcEECCCCEECCCCEEee--------------eEECCCCEECCCCEEeceEEC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKE--------------SIILQGASIGNHSLVLNSIVG 444 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~--------------s~Ig~~~~Ig~~~~I~~~iIg 444 (523)
.+.|.+.+.|+++|+|+|.+++- ++.+||+|+.|.+.++|.+ .+||.+....-+|..+...+|
T Consensus 20 Es~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvG 99 (190)
T KOG4042|consen 20 ESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVG 99 (190)
T ss_pred ecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhc
Confidence 35678999999999999999874 7899999999999999865 578888888778877777888
Q ss_pred CCCEECCCcEEcC
Q psy17795 445 RNSKVGNWSRVEG 457 (523)
Q Consensus 445 ~~~~Ig~~~~i~~ 457 (523)
++..|+..|.++.
T Consensus 100 d~NVieskayvg~ 112 (190)
T KOG4042|consen 100 DRNVIESKAYVGD 112 (190)
T ss_pred CcceEeeeeEecC
Confidence 8888887777765
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.5e-06 Score=74.90 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=34.2
Q ss_pred eceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCC
Q psy17795 439 LNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFK 518 (523)
Q Consensus 439 ~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~ 518 (523)
.+++||++|.||.+|.|.. .++|++++.||++++|.+ + +++++++.+. |.+.++...+
T Consensus 72 ~~~~Ig~~~~Ig~~~~i~~----------gv~Ig~~~vIgags~V~~-------~--v~~~~v~~G~---Pa~~i~~~~~ 129 (145)
T cd03349 72 GDVIIGNDVWIGHGATILP----------GVTIGDGAVIAAGAVVTK-------D--VPPYAIVGGN---PAKVIRYRFD 129 (145)
T ss_pred CCcEECCCCEECCCCEEeC----------CCEECCCCEECCCCEEcc-------c--cCCCeEEEec---CCEeehhhCC
Confidence 3678888888888888854 255666666655553322 1 4555555332 5555655544
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.7e-06 Score=77.73 Aligned_cols=52 Identities=25% Similarity=0.336 Sum_probs=43.1
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCC
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYP 152 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~ 152 (523)
++.|.+|||||| +|+|| . +|+|++++|+||++|+++.|... ++.++|+....
T Consensus 2 ~~~~~~vILAGG--~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~--~~~vvi~~~~~ 53 (192)
T COG0746 2 MTPMTGVILAGG--KSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQ--VDVVVISANRN 53 (192)
T ss_pred CCCceEEEecCC--ccccc-c-----ccccceeCCeEHHHHHHHHhccc--CCEEEEeCCCc
Confidence 356789999999 99999 5 89999999999999999999965 45555555443
|
|
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.3e-06 Score=79.25 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=49.4
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh--HHHHHHHHh
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS--ADLQKFVLD 162 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~--~~i~~~l~~ 162 (523)
|||||+| .++|| + +|+|++++|+|||+|+++.+.+...+++++|+++... +.+.+++..
T Consensus 2 aiIlA~G--~S~R~-~-----~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~ 62 (233)
T cd02518 2 AIIQARM--GSTRL-P-----GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK 62 (233)
T ss_pred EEEeeCC--CCCCC-C-----CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH
Confidence 7999999 99999 4 5999999999999999999998623899999998754 566666543
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >KOG1460|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-06 Score=83.33 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=39.1
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+|-.+++|+|++++.+.+.||+|+.|| .+++||+++.|..|||-++|.|.+++.+-+
T Consensus 284 ~IigdVyIhPsakvhptAkiGPNVSIg-----------a~vrvg~GvRl~~sIIl~d~ei~enavVl~ 340 (407)
T KOG1460|consen 284 EIIGDVYIHPSAKVHPTAKIGPNVSIG-----------ANVRVGPGVRLRESIILDDAEIEENAVVLH 340 (407)
T ss_pred eEEeeeEEcCcceeCCccccCCCceec-----------CCceecCCceeeeeeeccCcEeeccceEEe
Confidence 344455555555555555554444444 566788889999999999999999988876
|
|
| >KOG3121|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.3e-06 Score=71.53 Aligned_cols=96 Identities=14% Similarity=0.242 Sum_probs=58.6
Q ss_pred EECCCCEECCCCEEe----eeEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEcCCCCCCCCCCCcee
Q psy17795 408 SIDDGAVIGPGVRIK----ESIILQGASIGNHSLVL-------------NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAK 470 (523)
Q Consensus 408 ~Ig~~~~I~~~~~I~----~s~Ig~~~~Ig~~~~I~-------------~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~ 470 (523)
.+...++|.++++|+ ++.+|..|+++++|.|. ...||+++.|+++|++... .
T Consensus 35 ~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAA-----------q 103 (184)
T KOG3121|consen 35 LLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAA-----------Q 103 (184)
T ss_pred EEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehh-----------h
Confidence 444444445555553 26677778888777774 4689999999999999764 3
Q ss_pred cCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCC
Q psy17795 471 MDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTR 515 (523)
Q Consensus 471 I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~ 515 (523)
|+..+.+|.+++|..+ |++-+-|.|.+++++ +...+.|+.+++.
T Consensus 104 IgsyVh~GknaviGrr-CVlkdCc~ild~tVlPpet~vppy~~~~g 148 (184)
T KOG3121|consen 104 IGSYVHLGKNAVIGRR-CVLKDCCRILDDTVLPPETLVPPYSTIGG 148 (184)
T ss_pred heeeeEeccceeEcCc-eEhhhheeccCCcccCcccccCCceEEcC
Confidence 3444444444444444 555555556666666 4455555555543
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.6e-05 Score=89.07 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=14.3
Q ss_pred CCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 472 DNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 472 ~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
|++|+||++++|.+| ++||++|+|++++.+
T Consensus 164 G~~~~IG~~s~I~~g-~~Igd~a~vgagS~V 193 (695)
T TIGR02353 164 GRDAFIGTRSTLDID-TSIGDGAQLGHGSAL 193 (695)
T ss_pred CCCcEECCCCEEcCC-CEECCCCEECCCCEe
Confidence 333333333333333 445666666666655
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.4e-05 Score=87.60 Aligned_cols=45 Identities=9% Similarity=0.142 Sum_probs=32.4
Q ss_pred ceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEe
Q psy17795 468 FAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKEL 513 (523)
Q Consensus 468 ~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i 513 (523)
.++||++|+||.+++|.+| +.||++|.||+++++ .+..+.++++.
T Consensus 645 ~v~IG~~~~IG~~a~V~~g-~~IGd~a~Ig~~SvV~~g~~vp~~s~~ 690 (695)
T TIGR02353 645 TVTIGDGATLGPGAIVLYG-VVMGEGSVLGPDSLVMKGEEVPAHTRW 690 (695)
T ss_pred CeEECCCCEECCCCEECCC-CEECCCCEECCCCEEcCCcccCCCCEE
Confidence 4666667777777777777 677999999998888 55566666544
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >KOG1322|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.5e-06 Score=80.18 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=54.2
Q ss_pred CEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCC
Q psy17795 395 ASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNP 474 (523)
Q Consensus 395 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~ 474 (523)
+.|..++.+.+-+.+|++|.||++ ++||.+|.|++++.|.+|.|..++.++.++.|..+.
T Consensus 259 ~~i~~nvlvd~~~~iG~~C~Ig~~-----vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~i--------------- 318 (371)
T KOG1322|consen 259 SKIVGNVLVDSIASIGENCSIGPN-----VVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSI--------------- 318 (371)
T ss_pred ccccccEeeccccccCCccEECCC-----ceECCCcEecCceEEEeeEEEccceechhHHHHhhh---------------
Confidence 333333333333444444444443 445688888899999999999999999999887632
Q ss_pred CeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 475 PLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 475 ~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
+|-++.|..+ ++|-.+|+||.+++|.+.
T Consensus 319 --vg~~~~IG~~-~~id~~a~lG~nV~V~d~ 346 (371)
T KOG1322|consen 319 --VGWNVPIGIW-ARIDKNAVLGKNVIVADE 346 (371)
T ss_pred --ccccccccCc-eEEecccEeccceEEecc
Confidence 1112233333 456777777777777544
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00014 Score=68.15 Aligned_cols=33 Identities=6% Similarity=0.094 Sum_probs=18.4
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCe
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGK 482 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~ 482 (523)
.++||++|.||.+++|.+ .++||++++||++++
T Consensus 124 ~v~IG~~vwIG~~a~Ilp----------GV~IG~gavigagsV 156 (190)
T COG0110 124 PVTIGEDVWIGAGAVILP----------GVTIGEGAVIGAGSV 156 (190)
T ss_pred CeEECCCeEEcCccEECC----------CEEECCCcEEeeCCE
Confidence 355666666666666654 255555555555553
|
|
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.5e-05 Score=82.96 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=45.1
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCC
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYP 152 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~ 152 (523)
+.+.+|||||| +|+||+. +|+|++++|+|||+|+++.+.. .+++++|+++..
T Consensus 173 ~~i~~iILAGG--~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~--~~~~vvV~~~~~ 224 (369)
T PRK14490 173 VPLSGLVLAGG--RSSRMGS-----DKALLSYHESNQLVHTAALLRP--HCQEVFISCRAE 224 (369)
T ss_pred CCceEEEEcCC--ccccCCC-----CcEEEEECCccHHHHHHHHHHh--hCCEEEEEeCCc
Confidence 34679999999 9999975 9999999999999999999985 478888877653
|
|
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0017 Score=65.10 Aligned_cols=190 Identities=14% Similarity=0.175 Sum_probs=113.4
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeC-CcchHHHHHHHHhcC---CCcc-EEEEEccC-ChHHHHHHHHhhhhccC
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVA-GLPMIQHHIEACVQV---PNLK-EIIILGYY-PSADLQKFVLDMVQEYK 168 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~-g~pli~~~l~~~~~~---~g~~-~i~vv~~~-~~~~i~~~l~~~~~~~~ 168 (523)
-+|+|||| .||||+- .-||.|+|+. |+++++..+++++.. .+.+ ..+|.+.+ ..++..+||++... .+
T Consensus 5 avl~LaGG--~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~-~~ 78 (300)
T cd00897 5 VVLKLNGG--LGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG-VN 78 (300)
T ss_pred EEEEecCC--cccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC-Cc
Confidence 37888999 9999987 8899999995 579999999888642 1322 34556665 66789999988421 23
Q ss_pred eeEEEEeccc-cc----ch---hhhhccccccccc-CCCchhHHH-------Hh-hcccCCcceEEEEc-----cchHH-
Q psy17795 169 INIRYLQEFW-DI----IH---QQICISLYWTWYR-NTRSTYGIY-------RN-SLHWVQEAVYFTLE-----IRSDV- 225 (523)
Q Consensus 169 ~~i~~~~~~~-~~----g~---~~~~~~~~~~~~~-g~~ta~al~-------~~-~i~~~~d~~~Lvl~-----i~~D~- 225 (523)
.++.+..|.. |. |. +.+.......|+. | .++... .+ ++...-++ +.+.+ -..|.
T Consensus 79 ~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~G--hG~i~~aL~~sG~L~~l~~~G~~y-i~v~nvDNL~a~~Dp~ 155 (300)
T cd00897 79 VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPG--HGDIFESLYNSGLLDTLLAQGKEY-LFVSNIDNLGATVDLR 155 (300)
T ss_pred cCeEEEecCCcccCccccCccccccCCCcceeeccCC--CchHHHHHHHCCcHHHHHhcCCEE-EEEEecccccccCCHH
Confidence 3455444421 10 00 0000112234665 3 343332 22 22233455 55555 22465
Q ss_pred HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE-cCCCCcEEEEeecCCCc--------ccceeeeeEEEeeHHHHHHH
Q psy17795 226 VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR-KQQTSEISHYVEKPSTF--------VSTLVNCGVYLFSLDIFQNI 296 (523)
Q Consensus 226 l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~-d~~~~~V~~~~ekp~~~--------~~~l~~~Giyif~~~il~~l 296 (523)
++.+|...+ +++++=+.+-..++ .+-|.+.. |.. -+|+++.|-|.+. ...+.+++.+.|+-+.++.+
T Consensus 156 ~lg~~~~~~--~~~~~evv~Kt~~d-ek~G~l~~~~g~-~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~ 231 (300)
T cd00897 156 ILNHMVDNK--AEYIMEVTDKTRAD-VKGGTLIQYEGK-LRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRV 231 (300)
T ss_pred HHHHHHhcC--CceEEEEeecCCCC-CcccEEEEECCE-EEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHH
Confidence 888888888 88776444332112 35566553 432 3578888876531 34567899999998877765
Q ss_pred H
Q psy17795 297 A 297 (523)
Q Consensus 297 ~ 297 (523)
.
T Consensus 232 ~ 232 (300)
T cd00897 232 V 232 (300)
T ss_pred H
Confidence 3
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=68.52 Aligned_cols=97 Identities=13% Similarity=0.293 Sum_probs=65.2
Q ss_pred CCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEe
Q psy17795 411 DGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITIL 490 (523)
Q Consensus 411 ~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iI 490 (523)
..+.||+++.+...++++...+|+++.|.+.+++.++.|+.+|.+.+ ++..+.++.||+.+.|....++
T Consensus 21 gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~g----------NV~ve~dayiGE~~sI~gkl~v- 89 (277)
T COG4801 21 GDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTG----------NVIVENDAYIGEFSSIKGKLTV- 89 (277)
T ss_pred ccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeec----------cEEEcCceEEeccceeeeeEEE-
Confidence 34445555555556677777777777777777777777777777765 4666777777777777766555
Q ss_pred CCCCEECCCcEEeCeEEcCCcE-eCCCCC
Q psy17795 491 GDGVTVPGELIVLNSIVLPYKE-LTRSFK 518 (523)
Q Consensus 491 G~~~~Ig~~~~i~~~~v~~~~~-i~~~~~ 518 (523)
+.+-.||+.+.|.++.+..+-. |...+|
T Consensus 90 ~gdLdig~dV~Ieggfva~g~Ivirnpvp 118 (277)
T COG4801 90 IGDLDIGADVIIEGGFVAKGWIVIRNPVP 118 (277)
T ss_pred ecccccccceEEecCeeecceEEEcCCcc
Confidence 4456788888887777765533 333444
|
|
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.4e-05 Score=77.66 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=44.2
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY 151 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~ 151 (523)
.+.+|||||| +|+||+. +|.|+++.|+||++|+++.+.. .+++|+|+++.
T Consensus 160 ~i~~IILAGG--kSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~--~~~~ViVv~~~ 209 (346)
T PRK14500 160 PLYGLVLTGG--KSRRMGK-----DKALLNYQGQPHAQYLYDLLAK--YCEQVFLSARP 209 (346)
T ss_pred CceEEEEecc--ccccCCC-----CcccceeCCccHHHHHHHHHHh--hCCEEEEEeCc
Confidence 3459999999 9999976 9999999999999999999985 58899888864
|
|
| >KOG4750|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=7.6e-05 Score=69.58 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=24.5
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecC
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNP 485 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~ 485 (523)
.-.||+||.||.|+.|-+ +++||+++.|++++++..
T Consensus 200 hP~Igd~vliGaGvtILg----------nV~IGegavIaAGsvV~k 235 (269)
T KOG4750|consen 200 HPKIGDNVLIGAGVTILG----------NVTIGEGAVIAAGSVVLK 235 (269)
T ss_pred CCcccCCeEEccccEEeC----------CeeECCCcEEeccceEEe
Confidence 347788888888877765 466777777776665433
|
|
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00037 Score=66.69 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=51.8
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
|||+|-| ..+|+ | .|.|.+++|+|||+|+++++.+...+++|+|.+.. +.+.+.+.+ ++.++.+..
T Consensus 2 aiIpAR~--gS~rl-p-----~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~~----~g~~v~~~~ 67 (217)
T PF02348_consen 2 AIIPARG--GSKRL-P-----GKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAEE----YGAKVIFRR 67 (217)
T ss_dssp EEEEE-S--SSSSS-T-----TGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHH----TTSEEEE--
T ss_pred EEEecCC--CCCCC-C-----cchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHHH----cCCeeEEcC
Confidence 7899988 67777 4 59999999999999999999998789999888764 456666665 566664444
Q ss_pred cc
Q psy17795 176 EF 177 (523)
Q Consensus 176 ~~ 177 (523)
.+
T Consensus 68 ~~ 69 (217)
T PF02348_consen 68 GS 69 (217)
T ss_dssp TT
T ss_pred hh
Confidence 43
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0035 Score=65.93 Aligned_cols=193 Identities=17% Similarity=0.194 Sum_probs=111.3
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeC-CcchHHHHHHHHhcC---CCcc-EEEEEccC-ChHHHHHHHHhhhhcc
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA-GLPMIQHHIEACVQV---PNLK-EIIILGYY-PSADLQKFVLDMVQEY 167 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~-g~pli~~~l~~~~~~---~g~~-~i~vv~~~-~~~~i~~~l~~~~~~~ 167 (523)
.-+|+|||| .||||+- .-||.+++|. ++++++..++++... .+.+ ..+|.+.. ..++.+++|.++ ..+
T Consensus 57 vavl~LaGG--lGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~ky-fg~ 130 (420)
T PF01704_consen 57 VAVLKLAGG--LGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKY-FGL 130 (420)
T ss_dssp EEEEEEEES--BSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHG-CGS
T ss_pred EEEEEEcCc--ccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHh-cCC
Confidence 346889999 9999987 8899999995 568888888877641 1222 34555555 778999999983 334
Q ss_pred CeeEEEEecc-ccc--chhhhhc------c-ccccccc-CCCchhHHH-------Hhhc-ccCCcceEEEEc-----cch
Q psy17795 168 KINIRYLQEF-WDI--IHQQICI------S-LYWTWYR-NTRSTYGIY-------RNSL-HWVQEAVYFTLE-----IRS 223 (523)
Q Consensus 168 ~~~i~~~~~~-~~~--g~~~~~~------~-~~~~~~~-g~~ta~al~-------~~~i-~~~~d~~~Lvl~-----i~~ 223 (523)
+.++.+..|. -|. -+...+. + ....||. | .++-.. .+.+ ...-++ +.|.+ -..
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~G--hGdi~~aL~~sG~Ld~l~~~G~ey-ifv~nvDNL~a~~ 207 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPG--HGDIYRALYNSGLLDKLLARGIEY-IFVSNVDNLGAVV 207 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-T--GGGHHHHHHHTTHHHHHHHTT--E-EEEEETTBTT-TT
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCC--CcceehhhhccChHHHHHHcCCeE-EEEEecCCccccc
Confidence 4456555542 110 0001111 1 1135777 5 555333 2222 233466 66665 235
Q ss_pred HH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC--------cccceeeeeEEEeeHHHHH
Q psy17795 224 DV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST--------FVSTLVNCGVYLFSLDIFQ 294 (523)
Q Consensus 224 D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~--------~~~~l~~~Giyif~~~il~ 294 (523)
|. ++.++.+.+ +++.+-+.+-...+ ..-|.+...+..-+|+++.+-|.+ ....+-++|...|+-+.++
T Consensus 208 Dp~~lG~~~~~~--~~~~~evv~Kt~~d-ek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~ 284 (420)
T PF01704_consen 208 DPVFLGYMIEKN--ADFGMEVVPKTSPD-EKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLK 284 (420)
T ss_dssp -HHHHHHHHHTT---SEEEEEEE-CSTT-TSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHH
T ss_pred CHHHHHHHHhcc--chhheeeeecCCCC-CceeEEEEeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHH
Confidence 66 888888887 88777666543222 355766543210246666665532 1234568888899988887
Q ss_pred HHHH
Q psy17795 295 NIAA 298 (523)
Q Consensus 295 ~l~~ 298 (523)
.+.+
T Consensus 285 ~~~~ 288 (420)
T PF01704_consen 285 RLLE 288 (420)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.003 Score=66.63 Aligned_cols=213 Identities=16% Similarity=0.186 Sum_probs=107.0
Q ss_pred ceEEEEEEeeCCCCCcceeEEEEcCCCC---------cEEEEeecCCC-----------cccceeeeeEEEeeHHHHHHH
Q psy17795 237 ILVTVMATEATRQQSVYYGCIVRKQQTS---------EISHYVEKPST-----------FVSTLVNCGVYLFSLDIFQNI 296 (523)
Q Consensus 237 ~~~tv~~~~~~~~~~~~~g~v~~d~~~~---------~V~~~~ekp~~-----------~~~~l~~~Giyif~~~il~~l 296 (523)
+.+++++.+.+..-.+.-|+++.|++ + .+.+|..||.. ....+.++|++.|+.+..+.|
T Consensus 78 ~g~~~la~p~~~~~at~HGVfv~~~~-~~~~~~~~~~~v~~~L~KpS~eem~~~~av~~~~~~~ldsG~~~~s~~~~e~L 156 (414)
T PF07959_consen 78 PGVTALAHPSSLEYATNHGVFVLDRQ-GPDEEDLEYREVKDFLQKPSEEEMRASGAVLPDGNVLLDSGIVFFSSKAVESL 156 (414)
T ss_pred CCEEEEEeeCCHHHhcCCeEEEeCCC-CCccccchhhhHHHhhcCCCHHHHHhCCcccCCCcccccccceeccHHHHHHH
Confidence 45666666665444567899999887 6 78899999852 234467999999999887766
Q ss_pred HHhhccc--c-cccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcccC
Q psy17795 297 AAVFQSK--Q-DEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRH 373 (523)
Q Consensus 297 ~~~~~~~--~-~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~ 373 (523)
...-... . -.||.. . -..+=.+++-.|++..|.......-..... .+.+....+..+.+.+.......
T Consensus 157 ~~~~~~~~~~~~~y~~~--~----g~~~~ei~lY~Dfl~aLg~~~t~e~~~~~~--~~~~~~~~l~~aR~~l~~~Lr~~- 227 (414)
T PF07959_consen 157 LYLHVSPPLDLCTYYGL--S----GALPCEIDLYGDFLQALGPDATEEYPENTS--NVLKEESELREARQKLWKLLRGT- 227 (414)
T ss_pred HHhccCchHhhhhhhhh--c----CCccceehHHHHHHHHhcCCccccCccccC--CCcchhHHHHHHHHHHHHHhhhc-
Confidence 4321111 0 112210 0 000113455577777776432110000000 01111111222222222211110
Q ss_pred Ccccc-cCCCceEecCc-------EECCCC-EECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEEC
Q psy17795 374 PERLQ-CSSQCKTIGDV-------YIHSSA-SVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVG 444 (523)
Q Consensus 374 ~~~~~-~~~~~~i~~~~-------~i~~~~-~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg 444 (523)
|..+. -..+...+=+. ...... .+.... + ..+.....+.+.+++.|-+|+|..++.+|++++|++|.|+
T Consensus 228 ~l~vv~l~~~~F~H~GTs~E~L~~lt~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~ 305 (414)
T PF07959_consen 228 PLNVVPLPNGKFYHFGTSREYLEHLTSDSELGIMRRK-F-SHSPATTPSDSEASSCVINSILEGGVSVGPGSVIEHSHLG 305 (414)
T ss_pred cccccccCCceEEEecCCHHHHHhhccCcccccceee-e-eccccccccccCCCeeEEEeEecCCceECCCCEEEeeecC
Confidence 10000 00011000000 000000 011111 1 1112223455677888888999999999999999999999
Q ss_pred CCCEECCCcEEcCCCCC
Q psy17795 445 RNSKVGNWSRVEGTPCD 461 (523)
Q Consensus 445 ~~~~Ig~~~~i~~~~~~ 461 (523)
.++.||++|.|.|....
T Consensus 306 ~~~~IG~~cIisGv~~~ 322 (414)
T PF07959_consen 306 GPWSIGSNCIISGVDIN 322 (414)
T ss_pred CCCEECCCCEEECCccc
Confidence 99999999999886443
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0023 Score=68.08 Aligned_cols=192 Identities=14% Similarity=0.137 Sum_probs=112.0
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeC---CcchHHHHHHHHhcC-------------CCcc-EEEEEccC-ChHH
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA---GLPMIQHHIEACVQV-------------PNLK-EIIILGYY-PSAD 155 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~---g~pli~~~l~~~~~~-------------~g~~-~i~vv~~~-~~~~ 155 (523)
.-+|+|||| .||||+- .-||-|++|+ ++++++...+++... .+.. ..+|.+.. ..++
T Consensus 117 vavvlLAGG--qGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~ 191 (493)
T PLN02435 117 LAVVLLSGG--QGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEA 191 (493)
T ss_pred EEEEEeCCC--cccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHH
Confidence 346778888 9999998 8999999885 789999988876421 0111 23566655 6778
Q ss_pred HHHHHHhhhhccCe---eEEEEeccc-cc-c-hhhhhcc--ccccccc-CCCchhHHH-------Hhhc-ccCCcceEEE
Q psy17795 156 LQKFVLDMVQEYKI---NIRYLQEFW-DI-I-HQQICIS--LYWTWYR-NTRSTYGIY-------RNSL-HWVQEAVYFT 218 (523)
Q Consensus 156 i~~~l~~~~~~~~~---~i~~~~~~~-~~-g-~~~~~~~--~~~~~~~-g~~ta~al~-------~~~i-~~~~d~~~Lv 218 (523)
.++||.+. ..+|+ .|.+..|.. |. . +-....+ ..-.|+. | .++-.. .+.+ ...-++ +.+
T Consensus 192 T~~ff~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~G--nGgiy~aL~~sG~Ld~l~~~Gi~y-i~v 267 (493)
T PLN02435 192 TRKFFESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDG--NGGVYAALKSSRLLEDMASRGIKY-VDC 267 (493)
T ss_pred HHHHHHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCC--CcHHHHHHHHCCcHHHHHhcCCEE-EEE
Confidence 99999873 33443 466665532 10 0 0000000 0124555 4 444333 2222 223455 444
Q ss_pred Ec---c---chHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEc-CCCC--cEEEEeecCCC-----------cc
Q psy17795 219 LE---I---RSDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRK-QQTS--EISHYVEKPST-----------FV 277 (523)
Q Consensus 219 l~---i---~~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d-~~~~--~V~~~~ekp~~-----------~~ 277 (523)
.+ + ..|. ++-++...+ .++.+-+.+-..+ ...-|.+... .+ | .|.++.|-+.. ..
T Consensus 268 ~~vDN~L~~~~DP~flG~~~~~~--~d~~~kVv~K~~~-~EkvG~i~~~~~~-g~~~vvEYsEl~~~~~~~~~~~~g~L~ 343 (493)
T PLN02435 268 YGVDNALVRVADPTFLGYFIDKG--VASAAKVVRKAYP-QEKVGVFVRRGKG-GPLTVVEYSELDQAMASAINQQTGRLR 343 (493)
T ss_pred EecccccccccCHHHHHHHHhcC--CceEEEeeecCCC-CCceeEEEEecCC-CCEEEEEeccCCHHHHhccCccccccc
Confidence 44 2 3465 888888887 7776654432211 2355777542 22 4 47777775431 12
Q ss_pred cceeeeeEEEeeHHHHHHHHH
Q psy17795 278 STLVNCGVYLFSLDIFQNIAA 298 (523)
Q Consensus 278 ~~l~~~Giyif~~~il~~l~~ 298 (523)
....++++++|+-++++.+.+
T Consensus 344 ~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 344 YCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred cchhhHHHhhccHHHHHHHHH
Confidence 356788899999999887754
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00015 Score=48.31 Aligned_cols=25 Identities=44% Similarity=0.844 Sum_probs=8.6
Q ss_pred CCEECCCCEECCCcEECCCCEECCC
Q psy17795 394 SASVHPTAIVGPNVSIDDGAVIGPG 418 (523)
Q Consensus 394 ~~~I~~~~~I~~~~~Ig~~~~I~~~ 418 (523)
+++|++++.|.+++.||++|.|+++
T Consensus 7 ~~~i~~~~~i~~~~~Ig~~~~I~~~ 31 (36)
T PF00132_consen 7 NVIIGPNAVIGGGVVIGDNCVIGPG 31 (36)
T ss_dssp TEEEETTEEEETTEEE-TTEEEETT
T ss_pred CCEECCCcEecCCCEECCCCEEcCC
Confidence 3333333333333333333333333
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0027 Score=59.63 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=47.6
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC--ChHHHHHHHHh
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY--PSADLQKFVLD 162 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~--~~~~i~~~l~~ 162 (523)
|-++|+.|-. .+|||. -|.|+|++++|||+++|+++.....+++++|.+.. ..+.|.++..+
T Consensus 3 ~I~~IiQARm-gStRLp------gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~ 66 (241)
T COG1861 3 MILVIIQARM-GSTRLP------GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS 66 (241)
T ss_pred cEEEEeeecc-cCccCC------cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH
Confidence 4456666663 356664 49999999999999999999988778999999876 33456666655
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00023 Score=47.46 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=12.1
Q ss_pred CCCCEECCCCEEe-ceEECCCCEECCCcEE
Q psy17795 427 LQGASIGNHSLVL-NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 427 g~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i 455 (523)
|++|.|++++.|. ++.||+++.|++++.|
T Consensus 5 g~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 5 GDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp ETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred cCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 3344444444433 4444444444444444
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.018 Score=60.31 Aligned_cols=189 Identities=16% Similarity=0.213 Sum_probs=109.7
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC-CcchHHHHHHHHhcC---CCcc-EEEEEccCChHHHHHHHHhhhhcc
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA-GLPMIQHHIEACVQV---PNLK-EIIILGYYPSADLQKFVLDMVQEY 167 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~-g~pli~~~l~~~~~~---~g~~-~i~vv~~~~~~~i~~~l~~~~~~~ 167 (523)
+.-+|+|||| +|+||+- .-||.+++|. |+++++.+.+.++.+ .+++ ..+|.+....++-..++... ..+
T Consensus 105 klAvl~LaGG--qGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~-~Y~ 178 (472)
T COG4284 105 KLAVLKLAGG--QGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSN-DYF 178 (472)
T ss_pred ceEEEEecCC--ccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhh-hhc
Confidence 3457888999 9999998 8899999999 899999888877632 1333 23444446555666666552 112
Q ss_pred C---eeEEEEecc-cc--cchhhhhcc--cc--ccccc-CCCchh---HHH----Hh-hcccCCcceEEEEc-----cch
Q psy17795 168 K---INIRYLQEF-WD--IIHQQICIS--LY--WTWYR-NTRSTY---GIY----RN-SLHWVQEAVYFTLE-----IRS 223 (523)
Q Consensus 168 ~---~~i~~~~~~-~~--~g~~~~~~~--~~--~~~~~-g~~ta~---al~----~~-~i~~~~d~~~Lvl~-----i~~ 223 (523)
+ .+|.+..|. -| +.....+.. .+ .-||. | .++ +|. .+ ++...-+. +.|.| ...
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~G--nG~lf~aL~~SG~le~l~~~G~e~-lfV~nIDNL~~~v 255 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPG--NGDLFKALKSSGILEKLIAQGIEY-LFVSNIDNLGATV 255 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCC--CccHHHHHHhcchHHHHHhcCceE-EEEeccccccccc
Confidence 2 235555442 11 110111110 01 25776 3 333 333 12 22233455 55555 235
Q ss_pred HH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEE-EcCCCCcEEEEeecCCCc----------ccceee-eeEEEeeH
Q psy17795 224 DV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIV-RKQQTSEISHYVEKPSTF----------VSTLVN-CGVYLFSL 290 (523)
Q Consensus 224 D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~-~d~~~~~V~~~~ekp~~~----------~~~l~~-~Giyif~~ 290 (523)
|. ++.++...+ .+.++=++.-.+. ...-|.++ .|++ -||+++.|-|... .....+ .++++++-
T Consensus 256 D~~~lg~~~~~~--~e~~~e~t~Kt~a-~ekvG~Lv~~~g~-~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~ 331 (472)
T COG4284 256 DLKFLGFMAETN--YEYLMETTDKTKA-DEKVGILVTYDGK-LRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSV 331 (472)
T ss_pred CHHHHHHHHhcC--cceeEEEeecccc-cccceEEEEeCCc-eEEEEEecCChhHhhhhccccceeeeccccceeehhHH
Confidence 76 899999888 7777666543322 24567766 6766 7899998877531 112344 67777776
Q ss_pred HHHH
Q psy17795 291 DIFQ 294 (523)
Q Consensus 291 ~il~ 294 (523)
+.+.
T Consensus 332 ~~l~ 335 (472)
T COG4284 332 KFLK 335 (472)
T ss_pred HHHH
Confidence 6553
|
|
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0094 Score=60.10 Aligned_cols=187 Identities=11% Similarity=0.058 Sum_probs=105.1
Q ss_pred EEEEecCCCCCCcCCCCCCCCCccccee---CCcchHHHHHHHHhcCC-------Ccc-EEEEEccC-ChHHHHHHHHhh
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPV---AGLPMIQHHIEACVQVP-------NLK-EIIILGYY-PSADLQKFVLDM 163 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i---~g~pli~~~l~~~~~~~-------g~~-~i~vv~~~-~~~~i~~~l~~~ 163 (523)
+|+|||| .||||+- .-||-++++ .|+++++..+++++... +.. .++|.+.. ..++.+++|++.
T Consensus 3 ~vllaGG--~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 3 FVLVAGG--LGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEecCC--CccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 6888999 9999998 899999999 48999999998886531 111 34666665 677899999873
Q ss_pred hhccC---eeEEEEeccc-c-cc--hhhhhccc----cccccc-CCCchhHHH-------Hhhcc-cCCcceEEEEc---
Q psy17795 164 VQEYK---INIRYLQEFW-D-II--HQQICISL----YWTWYR-NTRSTYGIY-------RNSLH-WVQEAVYFTLE--- 220 (523)
Q Consensus 164 ~~~~~---~~i~~~~~~~-~-~g--~~~~~~~~----~~~~~~-g~~ta~al~-------~~~i~-~~~d~~~Lvl~--- 220 (523)
..+| .+|.+..|.. | +. +...++.. ...|+. | .++-.. .+.+. ..-++ +.+.+
T Consensus 78 -~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~G--hGdiy~aL~~sGlLd~l~~~Giky-i~v~~vdN 153 (315)
T cd06424 78 -NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHG--HGDVHTLLYNSGLLKKWIEAGYKW-LVFFQDTN 153 (315)
T ss_pred -CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCC--chHHHHHHHHCCcHHHHHHCCCEE-EEEEecch
Confidence 2234 3466655532 1 00 00110011 124555 3 444332 22222 33455 44433
Q ss_pred c---chHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE-cCCCC--cE--EEEeecCCC----------------
Q psy17795 221 I---RSDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR-KQQTS--EI--SHYVEKPST---------------- 275 (523)
Q Consensus 221 i---~~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~-d~~~~--~V--~~~~ekp~~---------------- 275 (523)
. ..|. ++-++..++ +++...+.+. .....-|++.. +..+| .| +++.|-+..
T Consensus 154 ~L~~~adP~fiG~~~~~~--~d~~~k~v~~--~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~ 229 (315)
T cd06424 154 ALAFKAIPAVLGVSATKS--LDMNSLTVPR--KPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTG 229 (315)
T ss_pred hhhhccChhhEEEEecCC--CceEeEEEeC--CCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccc
Confidence 1 1333 555666666 6766555442 22356787753 21113 34 777664320
Q ss_pred cccceeeeeEEEeeHHHHHH
Q psy17795 276 FVSTLVNCGVYLFSLDIFQN 295 (523)
Q Consensus 276 ~~~~l~~~Giyif~~~il~~ 295 (523)
......|+++++|+-+.+..
T Consensus 230 ~s~f~gNi~~~~f~l~~~~~ 249 (315)
T cd06424 230 FSPFPGNINQLVFSLGPYMD 249 (315)
T ss_pred cccCCCeeeeEEEeHHHHHH
Confidence 11226789999999775543
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00084 Score=44.21 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=12.4
Q ss_pred EECCCCEECCCCEEeeeEECCCCEECCCCEE
Q psy17795 408 SIDDGAVIGPGVRIKESIILQGASIGNHSLV 438 (523)
Q Consensus 408 ~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I 438 (523)
.||++|.|+++|.| ...||++|.|+++++|
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred EECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 44444444444444 2445555555555544
|
... |
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0049 Score=58.03 Aligned_cols=67 Identities=25% Similarity=0.405 Sum_probs=49.5
Q ss_pred eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcC
Q psy17795 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~ 457 (523)
...+++.||+++.+. ..++|+...+|+++.|...++..++.|+..|.+. |++.++++.||+++.|.+
T Consensus 18 vv~gdViIG~nS~l~-------~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~g 85 (277)
T COG4801 18 VVKGDVIIGKNSMLK-------YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKG 85 (277)
T ss_pred EEeccEEEcccceee-------eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeee
Confidence 444555555555554 3366777777777788777777888888888887 888888889999888876
|
|
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.024 Score=65.14 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=45.6
Q ss_pred ceEEEEEEeeCCCCCcceeEEEEcCCC-CcEEEEeecCCC--------cccceeeeeEEEeeHHHHHHHHHh
Q psy17795 237 ILVTVMATEATRQQSVYYGCIVRKQQT-SEISHYVEKPST--------FVSTLVNCGVYLFSLDIFQNIAAV 299 (523)
Q Consensus 237 ~~~tv~~~~~~~~~~~~~g~v~~d~~~-~~V~~~~ekp~~--------~~~~l~~~Giyif~~~il~~l~~~ 299 (523)
++++..+...+.+-.++.|+++.|.++ +++..+..||.. ....+.|+|+|+|+.+..+.|...
T Consensus 176 ~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~l~D~g~~~~~~~a~~~L~~~ 247 (974)
T PRK13412 176 ADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLFLMDIGIWLLSDRAVELLMKR 247 (974)
T ss_pred cCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeEEEeeeEEEEChHHHHHHHHh
Confidence 555666655544456788999988752 478888899862 345688999999999988777543
|
|
| >KOG2638|consensus | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.79 Score=47.21 Aligned_cols=167 Identities=16% Similarity=0.211 Sum_probs=90.4
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCC-cchHHHHHHHHhcC---CCccE-EEEEccC-ChHHHHHHHHhhhhccCe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAG-LPMIQHHIEACVQV---PNLKE-IIILGYY-PSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g-~pli~~~l~~~~~~---~g~~~-i~vv~~~-~~~~i~~~l~~~~~~~~~ 169 (523)
++=|-|| .|+-|+- .-||.++++.+ .+.|+-++.+.+.+ -+++- .++...+ -.++.++++.++. ...+
T Consensus 106 vlKLNGG--lGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~-~~kv 179 (498)
T KOG2638|consen 106 VLKLNGG--LGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA-GSKV 179 (498)
T ss_pred EEEecCC--cCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc-CCce
Confidence 4557777 9999987 88999999985 67777666555432 13332 3444444 5568888888752 2244
Q ss_pred eEEEEecc--------cccchhhhhc-cccccccc-CCCch---hHHH----Hh-hcccCCcceEEEEc-----cchHH-
Q psy17795 170 NIRYLQEF--------WDIIHQQICI-SLYWTWYR-NTRST---YGIY----RN-SLHWVQEAVYFTLE-----IRSDV- 225 (523)
Q Consensus 170 ~i~~~~~~--------~~~g~~~~~~-~~~~~~~~-g~~ta---~al~----~~-~i~~~~d~~~Lvl~-----i~~D~- 225 (523)
+|.-..|. ..+-...... +....||. | .+ ++++ .+ ++.+.-|. ++|.| -..|+
T Consensus 180 ~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPG--HGd~f~sl~nSG~Ld~llaqGkEy-lFVSNiDNLGAtvDL~ 256 (498)
T KOG2638|consen 180 DIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPG--HGDLFDSLHNSGLLDKLLAQGKEY-LFVSNIDNLGATVDLN 256 (498)
T ss_pred eEEEeccccCCccccccccCCCcccCCCCcccccCCC--CccHHHHHhccchHHHHHhCCceE-EEEeccccccceeeHH
Confidence 45433331 1111000000 12357998 4 43 3444 33 34444566 77766 23566
Q ss_pred HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEE-EcCCCCcEEEEeecCCC
Q psy17795 226 VILMHSLYSMAILVTVMATEATRQQSVYYGCIV-RKQQTSEISHYVEKPST 275 (523)
Q Consensus 226 l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~-~d~~~~~V~~~~ekp~~ 275 (523)
++++....+ ....|=+++-.+.+ .+-|.+. .+.. -|++++..-|.+
T Consensus 257 ILn~~i~~~--~ey~MEvTdKT~aD-vKgGtLi~y~G~-lrlLEiaQVP~e 303 (498)
T KOG2638|consen 257 ILNHVINNN--IEYLMEVTDKTRAD-VKGGTLIQYEGK-LRLLEIAQVPKE 303 (498)
T ss_pred HHHHHhcCC--CceEEEecccchhh-cccceEEeecCE-EEEEEeccCChh
Confidence 788877777 77666665433222 2335443 3322 245555555543
|
|
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.62 Score=51.42 Aligned_cols=154 Identities=11% Similarity=0.023 Sum_probs=88.7
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC---CcchHHHHHHHHhcC----------CCcc-EEEEEccC-ChHHHH
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA---GLPMIQHHIEACVQV----------PNLK-EIIILGYY-PSADLQ 157 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~---g~pli~~~l~~~~~~----------~g~~-~i~vv~~~-~~~~i~ 157 (523)
++-+|+|||| .||||+- .-||-++|++ |+++++..++++... .+.. -++|.+.+ ..++..
T Consensus 128 kvavllLaGG--lGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 128 NAAFVLVAGG--LGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred cEEEEEecCC--cccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 3457888888 9999997 8899999974 899999999887542 0111 24566655 667899
Q ss_pred HHHHhhhhccC---eeEEEEeccc-c-cc-hhhhhc-----cccccccc-CCCchhHHH-------Hhhc-ccCCcceEE
Q psy17795 158 KFVLDMVQEYK---INIRYLQEFW-D-II-HQQICI-----SLYWTWYR-NTRSTYGIY-------RNSL-HWVQEAVYF 217 (523)
Q Consensus 158 ~~l~~~~~~~~---~~i~~~~~~~-~-~g-~~~~~~-----~~~~~~~~-g~~ta~al~-------~~~i-~~~~d~~~L 217 (523)
+||.+. ..+| .+|.+..|.. | +. +..+.. .....|+. | .++-.. .+.+ ...-++ +.
T Consensus 203 ~~~~~n-~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~G--hGdi~~aL~~sGlLd~l~~~G~~y-i~ 278 (615)
T PLN02830 203 KLLERN-DYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHG--HGDVHALLYSSGLLDKWLSAGKKW-VV 278 (615)
T ss_pred HHHHHC-CccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCC--ccHHHHHHHHCCCHHHHHHcCCEE-EE
Confidence 999873 3333 2465555532 1 00 000100 01224566 3 333322 2222 233455 55
Q ss_pred EEc---c---chHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE
Q psy17795 218 TLE---I---RSDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR 259 (523)
Q Consensus 218 vl~---i---~~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~ 259 (523)
+.+ . ..|. ++-++...+ .++.+-+.+-. ....-|++..
T Consensus 279 v~~vDN~L~~~Adp~flG~~~~~~--~d~~~kvv~K~--~~E~vGvi~~ 323 (615)
T PLN02830 279 FFQDTNGLVFKAIPAALGVSATKG--FDMNSLAVPRK--AKEAIGAIAK 323 (615)
T ss_pred EEeccchhhhcccHHHhHHHHhcC--CceEEEEEECC--CCcccceEEE
Confidence 544 1 2344 788888887 77776665432 2245676653
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.62 Score=49.26 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=44.7
Q ss_pred CEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCC
Q psy17795 395 ASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447 (523)
Q Consensus 395 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~ 447 (523)
..+.+++.| -+++|..++.|+++++|.+|.|+.++.||++|.|.++-+.+..
T Consensus 274 ~~~~~~~~V-inSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~~ 325 (414)
T PF07959_consen 274 SDSEASSCV-INSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSWS 325 (414)
T ss_pred cccCCCeeE-EEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccccc
Confidence 445666666 6899999999999999999999999999999999988776654
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=89.19 E-value=0.4 Score=44.24 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=30.6
Q ss_pred CCcccceeCC--cchHHHHHHHHhcCCCccEEEEEccCC
Q psy17795 116 SPKPLFPVAG--LPMIQHHIEACVQVPNLKEIIILGYYP 152 (523)
Q Consensus 116 ~pK~ll~i~g--~pli~~~l~~~~~~~g~~~i~vv~~~~ 152 (523)
.+|+|++++| +|+|+|+++.+.. .+++++|+++..
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~--~~~~iivv~~~~ 39 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQ--RCAPVFVMAAPG 39 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhh--cCCEEEEECCCC
Confidence 3899999999 9999999998873 689999998753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 523 | ||||
| 1e8o_A | 85 | Core Of The Alu Domain Of The Mammalian Srp Length | 7e-07 | ||
| 3foq_A | 503 | Crystal Structure Of N-Acetylglucosamine-1-Phosphat | 6e-06 | ||
| 2qkx_A | 391 | N-Acetyl Glucosamine 1-Phosphate Uridyltransferase | 7e-06 | ||
| 3spt_A | 501 | Crystal Structure Of Glmu From Mycobacterium Tuberc | 7e-06 | ||
| 3d8v_A | 495 | Crystal Structure Of Glmu From Mycobacterium Tuberc | 7e-06 | ||
| 1914_A | 232 | Signal Recognition Particle Alu Rna Binding Heterod | 2e-05 | ||
| 2ggo_A | 401 | Crystal Structure Of Glucose-1-Phosphate Thymidylyl | 4e-05 |
| >pdb|1E8O|A Chain A, Core Of The Alu Domain Of The Mammalian Srp Length = 85 | Back alignment and structure |
|
| >pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate Uridyltransferase (Glmu) From Mycobacterium Tuberculosis In A Cubic Space Group Length = 503 | Back alignment and structure |
|
| >pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From Mycobacterium Tuberculosis Complex With N-Acetyl Glucosamine 1-Phosphate Length = 391 | Back alignment and structure |
|
| >pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Acetyl Coenzyme A And Uridine-Diphosphate-N-Acetylglucosamine Length = 501 | Back alignment and structure |
|
| >pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Uridine-Diphosphate-N-Acetylglucosamine Length = 495 | Back alignment and structure |
|
| >pdb|1914|A Chain A, Signal Recognition Particle Alu Rna Binding Heterodimer, Srp914 Length = 232 | Back alignment and structure |
|
| >pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate Thymidylyltransferase From Sulfolobus Tokodaii Length = 401 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 523 | |||
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 3e-35 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 3e-15 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 2e-12 | |
| 1914_A | 232 | Signal recognition particle 9/14 fusion protein; A | 6e-12 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 4e-10 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 4e-10 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 5e-10 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 5e-10 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 4e-09 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 2e-08 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 4e-04 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 6e-04 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 3e-08 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 4e-04 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 4e-08 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 2e-06 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 3e-06 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 7e-04 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 5e-08 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 3e-04 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 9e-08 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 1e-07 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 1e-07 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 2e-07 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 4e-04 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 8e-04 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 2e-07 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 3e-06 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 2e-07 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 3e-07 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 3e-05 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 4e-07 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 6e-07 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 6e-07 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 4e-06 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 4e-06 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 1e-04 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 1e-05 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 2e-05 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 2e-05 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 3e-05 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 4e-05 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 8e-05 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 9e-05 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 2e-04 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 3e-04 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 4e-04 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 6e-04 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 8e-04 |
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 3e-35
Identities = 74/416 (17%), Positives = 136/416 (32%), Gaps = 84/416 (20%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
G R P++ PK P+ P+I++ IE + +I+ +
Sbjct: 10 SGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNK--------EYF 61
Query: 165 QEYKINIRY-LQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEA-------VY 216
++ I Q+ + T G + A +
Sbjct: 62 EKKLKEISIVTQK------DD----IKGT---------G------AAILSAKFNDEALII 96
Query: 217 F--TLEIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPS 274
+ + + +L AI+ ++ YG +V Q + +S +EKP
Sbjct: 97 YGDLFFSNEKEICNIITLKENAIIGVKVS-NPKD-----YGVLVLDNQ-NNLSKIIEKPE 149
Query: 275 TFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPL 334
S L+N G+Y + DIF + + S++ E TD I L +
Sbjct: 150 IPPSNLINAGIYKLNSDIFTYLDKISISERGELEL---------TDA--INL-------M 191
Query: 335 AGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSS 394
A + V + +W + + I N+ L K G V I
Sbjct: 192 AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALD-NLVFSQNLGNVEDNVKIKGKVIIEED 250
Query: 395 ASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGNWS 453
A + + V I G+ IGP ++ +I+++ IG V S++ SK+ + S
Sbjct: 251 AEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLS 310
Query: 454 RVE------------GT-PCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTV 496
V GT + ++ K++ S+G+ +G V
Sbjct: 311 YVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGR-RKLGAFIGGHVRT 365
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 3e-15
Identities = 36/243 (14%), Positives = 81/243 (33%), Gaps = 46/243 (18%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR RPL+ ++PK L V P+I++ IE + + +III+ Y L++ +
Sbjct: 35 LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK-GINDIIIIVGY----LKEQFDYLK 89
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRSD 224
++Y + + + + Y + + Y +Y V+E + + I +D
Sbjct: 90 EKYGVRLVFNDK-----------------YADYNNFYSLYL-----VKEELANSYVIDAD 127
Query: 225 VVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCG 284
+ + + T + + +V ++ + + + G
Sbjct: 128 NYLFKNMFRNDLTRSTYFSVYREDCTN--EWFLVYGDD-YKVQDIIVDSK---AGRILSG 181
Query: 285 VYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQ 344
V + + I F + Y+ + ++ YV +
Sbjct: 182 VSFWDAPTAEKIV--------SFIDKAYVSGEFVDLY-----WDNMVKDNIKELDVYVEE 228
Query: 345 TSK 347
Sbjct: 229 LEG 231
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-12
Identities = 31/252 (12%), Positives = 66/252 (26%), Gaps = 70/252 (27%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII-LGYYPSADLQKFVLDM 163
GTR + PKPL V G +I ++ ++ E II Y D
Sbjct: 28 LGTRLGGV----PKPLVRVGGCEIILRTMKLLSP--HVSEFIIVASRYA---------DD 72
Query: 164 VQEYKINIRYLQEFWD--IIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEI 221
+ + + ++ I+ R + + + V++ T+
Sbjct: 73 IDAF-----LKDKGFNYKIVRHD----------RPEKGNGYSLLVAKNHVEDRFILTM-- 115
Query: 222 RSDVVI---LMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVS 278
D V + ++ I + ++ +
Sbjct: 116 -GDHVYSQQFIEKAVRGEGVIADREPR--FVDIGEATKIRVED--GRVAKIGKDLRE--F 168
Query: 279 TLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSG 338
V+ G ++ IF++ K D E+ + +
Sbjct: 169 DCVDTGFFVLDDSIFEHAE-------------------KLRDR-----EEIPLSEIVKLA 204
Query: 339 K-AYVYQTSKWW 349
+ Y + W
Sbjct: 205 RLPVTYVDGELW 216
|
| >1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C* Length = 232 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 6e-12
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 17 DNARYSMKYDHKNGYLKLKMTDDNVCLIYKTEMSQDLKKID 57
R +KY H +G L +K+TDD VCL+Y+T+ +QD+KKI+
Sbjct: 169 MKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIE 209
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRNSKV 449
IH +A +HPTAI+ +V I+ AV+ + I G+ IG S VG +S +
Sbjct: 127 IHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGA-----YSTVGEHSYI 181
Query: 450 GNWSRV 455
RV
Sbjct: 182 --HPRV 185
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRNSKV 449
IH +A V A V P+ S+ AVI G RI I IG S++G +
Sbjct: 122 IHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGA-----RSVIGEGGWL 176
Query: 450 GNWSRV 455
RV
Sbjct: 177 --APRV 180
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRNSKV 449
I SA + TA +G NVSI AVI GV + II G +G NS +G S++
Sbjct: 100 IAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGK-----NSKIGAGSRL 154
Query: 450 GNWSRV 455
W+ V
Sbjct: 155 --WANV 158
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 5e-10
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KGTR + KPL + G +I + + ++ + I I + ++++
Sbjct: 10 KGTRMGGV----EKPLIKLCGRCLIDYVVSPLLK-SKVNNIFIATSPNTPKTKEYINSAY 64
Query: 165 QEYKINIRYLQE 176
++YK NI +
Sbjct: 65 KDYK-NIVVIDT 75
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255 | Back alignment and structure |
|---|
Score = 56.6 bits (135), Expect = 4e-09
Identities = 19/188 (10%), Positives = 41/188 (21%), Gaps = 21/188 (11%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
+RF PK + G + +H + + + +
Sbjct: 9 MSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKAT 68
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTR---STYGIYRNSLHWVQEAVYFTLEI 221
Q + + Q ++L N + V+ +
Sbjct: 69 QLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDISQ 128
Query: 222 RSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLV 281
SD + Q + + +S L
Sbjct: 129 HSDGYLE------------------VFQGGGDNWSFAKPEHAGSTKVIQTAEKNPISDLC 170
Query: 282 NCGVYLFS 289
+ G+Y F+
Sbjct: 171 STGLYHFN 178
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
G + + I+ NV + D IG G +K +I I +S++ +SIVG
Sbjct: 264 GTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEK 323
Query: 447 SKVG 450
+ +G
Sbjct: 324 AAIG 327
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
KGTR S D PK L +AG PM++H I+ Q+ + +I G+
Sbjct: 15 KGTRMY--S-DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGH 57
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 6e-04
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIV 443
+ +V I + + P + V + + + A IGP R++ + + +GN + S V
Sbjct: 297 VLKNVVIGNDVEIKPYS-VLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTV 355
Query: 444 GRNSKVG 450
G+ SKV
Sbjct: 356 GKGSKVN 362
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
G++ ++ I+ +V + D IG G +K +I + I ++++ ++ + N
Sbjct: 267 GELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDAN 326
Query: 447 SKVG 450
VG
Sbjct: 327 CTVG 330
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
KGTR S D PK L P+AG PM+QH I+A +++ ++ G+
Sbjct: 18 KGTRMY--S-DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGH 60
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 4e-08
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSK 448
I SA + I+G NV+I+D I G I++ I +G+ IG SI+G
Sbjct: 4 NISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGA-----RSILGEYLV 58
Query: 449 VGNWSRV 455
R+
Sbjct: 59 DFYNDRI 65
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 14/102 (13%)
Query: 394 SASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKVGNW 452
++ +AI+ V I + I V I II I S +G S +G
Sbjct: 2 PNNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKK-----GSFIGARSILGE- 55
Query: 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGV 494
N K + N + I GD +
Sbjct: 56 ------YLVDFYNDRINKKHPLIIGE-NALIRTENVIYGDTI 90
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 17/90 (18%)
Query: 385 TIG-DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESI---------ILQGASIGN 434
IG +V I + + I+ NV I G+ IG + E + IG
Sbjct: 16 IIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGE 75
Query: 435 HSLVLNS-------IVGRNSKVGNWSRVEG 457
++L+ I+G N + G+ +
Sbjct: 76 NALIRTENVIYGDTIIGDNFQTGHKVTIRE 105
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 23/132 (17%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSI 442
IG+ I + ++ I+G N I +I I + I + +
Sbjct: 72 IIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQH-----HVY 126
Query: 443 VGRNSKVGNWSRV-EGTPCDPN----PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVP 497
+G + + V E + P+ PP G + +
Sbjct: 127 IGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNELLG------VTIELFAVIA 180
Query: 498 GELIVLNSIVLP 509
S+VLP
Sbjct: 181 A-----RSVVLP 187
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 54.0 bits (131), Expect = 5e-08
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
DV I + I+ I V+ G + +S I GA I +S++ S V
Sbjct: 273 IDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVI-TNSMIEESSVADG 331
Query: 447 SKVGNWSR 454
VG ++
Sbjct: 332 VTVGPYAH 339
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
KGTR + S D PK L VAG+ M++H + + K + ++G+
Sbjct: 21 KGTRMK--S-DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGH 63
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 9e-08
Identities = 26/127 (20%), Positives = 40/127 (31%), Gaps = 12/127 (9%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRN 446
IH +A V A +G + I I G I + + Q +GN +G
Sbjct: 3 MATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGN-----RVRIGNR 57
Query: 447 SKVGN----WSRVE-GTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELI 501
K+ N + V P+ F P K TI+ G T+
Sbjct: 58 VKIQNNVSVYDNVFLEDDVFCGPSMVFTN-VYNPRAAIERKSEYRDTIVRQGATLGANCT 116
Query: 502 VLNSIVL 508
V+ +
Sbjct: 117 VVCGATI 123
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
I +A + P A + V I + VIG GV++ E G + N+ + ++ VG+N+++
Sbjct: 4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDE-----GVKLHNNVTLQGHTFVGKNTEI 58
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNS 447
+ IH +A + P A + +V + ++I V I+E G I H + S +G+ +
Sbjct: 1 MKIHPTAIIDPKAELHESVEVGPYSIIEGNVSIQE-----GTIIEGHVKICAGSEIGKFN 55
Query: 448 KV 449
+
Sbjct: 56 RF 57
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
DV I +HP + I V+GP + + + GAS+ + +S +G
Sbjct: 282 VDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASV-VRTHGSSSSIGDG 340
Query: 447 SKVGNWSR 454
+ VG ++
Sbjct: 341 AAVGPFTY 348
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 99 TTPGPL--------KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
T PG GTR R S D+PK L +AG M+ H + A ++ + I++LG+
Sbjct: 8 TFPGDTAVLVLAAGPGTRMR--S-DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGH 64
Query: 151 YPSADL-QKFVLDMVQEYKINIRY-LQE 176
V ++ I LQ+
Sbjct: 65 --DHQRIAPLVGELADTLGRTIDVALQD 90
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIV 443
T+ DV + ASV T SI DGA +GP ++ + + +G V NS +
Sbjct: 315 TLTDVAVGDGASVVRTHGSS--SSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTI 372
Query: 444 GRNSKVG 450
G +KV
Sbjct: 373 GTGTKVP 379
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-------SIILQGASIGNHS 436
I V +++S+ + ++G + GA V+I + S +L S+ + S
Sbjct: 109 KIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDS 168
Query: 437 LV-LNSIVGRNSKVGNWSRVEGTPC 460
++ + + +N G P
Sbjct: 169 ILGGGATLVKN--QDEKGVFVGVPA 191
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 19/106 (17%)
Query: 397 VHPTAIVGPNVSIDD--GAVIGPGVRIKESIILQGASIGNHSLV-LNSIVGRNSKVGNWS 453
+H +A++ P+ +++ G +I P V +I A I ++ +S++ +G +S
Sbjct: 78 IHKSALISPSAIVEENAGILIMPYV-----VINAKAKIEKGVILNTSSVIEHECVIGEFS 132
Query: 454 RVEGTPCDPNPNKAFA---KMDNPPLFNSNGKLNPSITILGDGVTV 496
V + A K+ N + P++++ D +
Sbjct: 133 HV-------SVGAKCAGNVKIGKNCFLGINSCVLPNLSL-ADDSIL 170
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
IH SA + A +G +V I+ A + +I I + +L ++ +G +S+V
Sbjct: 7 IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGN-----NVVIKQGARILSDTTIGDHSRV 61
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 379 CSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-------SIILQGAS 431
++ I++ A V +G + + + GV + E + ++ G +
Sbjct: 126 INADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVT 185
Query: 432 IGNHSLV-LNSIVGRNSKVGNWSRVEGTPC 460
IG ++V +V R+ + + G P
Sbjct: 186 IGADTIVGAGGVVVRD--LPDSVLAIGVPA 213
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLV-------LNS 441
IH SA V P+ +G V++ G I I +II GA + + + S
Sbjct: 101 AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPAS 160
Query: 442 IVGRNSKVGN 451
+ VG
Sbjct: 161 ALAGGVSVGE 170
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
IH +A + P A + V + A++G V I +IG+HS++ ++ +G ++++
Sbjct: 25 IHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGA-----RTTIGSHSVIEGHTTIGEDNRI 79
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 6e-07
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
IH SA VHP A++G VS+ IG V++ G + S V N+ +G + +
Sbjct: 10 IHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGN-----GCKLYPSSHVFGNTELGESCVL 64
Query: 450 GNWSRVEGTPCDP 462
+ V
Sbjct: 65 MTGAVVGDELPGY 77
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 6e-07
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
+H +A V A +G N I ++GP V I E G + +H +V ++ +GR++++
Sbjct: 8 VHPTAIVEEGASIGANAHIGPFCIVGPHVEIGE-----GTVLKSHVVVNGHTKIGRDNEI 62
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A Length = 173 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 4e-06
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 26/91 (28%)
Query: 386 IGDVYIHSSASVHPTAI---------VGPNVSIDDGAV----------IGPGVRIKESII 426
IGDV + SV P+A+ VG ++ D IG V I + +
Sbjct: 26 IGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAM 85
Query: 427 LQGASIGNHSL------VLN-SIVGRNSKVG 450
+ GA +GN+ + +L+ + +G + +G
Sbjct: 86 VHGAKVGNYVIIGISSVILDGAKIGDHVIIG 116
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 4e-06
Identities = 11/63 (17%), Positives = 27/63 (42%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
S ASV A++ + I + ++ + + + +G++ + ++NS + RN
Sbjct: 273 GAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNC 332
Query: 448 KVG 450
Sbjct: 333 VTA 335
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
+ +S + A S+ AVI I E + + + N+ +G+ S
Sbjct: 261 FEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGE-----NVLVSQRAYLDNAWMGKGS 315
Query: 448 KVG 450
Sbjct: 316 NAQ 318
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A Length = 173 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 27/105 (25%)
Query: 386 IGDVYIHSSASVHPTAI---------VGPNVSIDDGAV----------IGPGVRIKESII 426
GDVY+ +S+ + +G V++ D + V + +I
Sbjct: 28 TGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVI 87
Query: 427 LQGASIGNHSL------VLN-SIVGRNSKVGNWSRV-EGTPCDPN 463
L I +L +L+ + +G + +G S V +G PN
Sbjct: 88 LHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPN 132
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 26/160 (16%)
Query: 362 NRHYLQLYKTR------HPERLQCSSQCKTIG-DVYIHSSASVHPTAIV--GPNVSIDDG 412
+ H+ LY E L ++G +V I AS++ ++ G NV IDD
Sbjct: 6 HHHHENLYFQGHMNSFYSQEEL-KKIGFLSVGKNVLISKKASIYNPGVISIGNNVRIDDF 64
Query: 413 AVIGPGVRI-KESIILQGASI--GNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFA 469
++ V I S I ++ G + + + + + + V D + N
Sbjct: 65 CILSGKVTIGSYSHIAAYTALYGGEVGIEM----YDFANISSRTIVYAAIDDFSGN---- 116
Query: 470 KMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLP 509
+ P + N + IL V + G +SI+ P
Sbjct: 117 ALMGPTIPNQYKNVKTGKVILKKHVII-GA----HSIIFP 151
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A Length = 213 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 25/115 (21%), Positives = 34/115 (29%), Gaps = 37/115 (32%)
Query: 386 IGDVYIHSSASVHPTAI----------VGPNVSIDDGAV--------------------I 415
IGDV I + P +G +I DG V I
Sbjct: 55 IGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWI 114
Query: 416 GPGVRIKESIILQG-ASIGNHSL------VLNSIVGRNSKVGNWSRVEGTPCDPN 463
G V I ++ G A IG+ V N+ VG V ++ P
Sbjct: 115 GDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLIQDVEIPPG 169
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 74/420 (17%), Positives = 139/420 (33%), Gaps = 129/420 (30%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDM 163
+G+R + L+ KP G +I + + ++ I + Y + L + +
Sbjct: 22 RGSRLKELTDRRAKPAVYFGGKARIIDFALSNALN-SGIRRIGVATQYKAHSLIRHL--- 77
Query: 164 VQEYKINIRYLQEFWDII--HQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEI 221
+ + E +DI+ Q++ + WY T +Y+N +
Sbjct: 78 QRGWDFFRPERNESFDILPASQRVSET---QWYEGTAD--AVYQN--------IDIIEPY 124
Query: 222 RSD-VVILM--HSLYSM---AIL---------VTVMATEATRQQSVYYGCIVRKQQTSEI 266
+ +VIL H +Y M +L VT+ E R ++ +G ++ + EI
Sbjct: 125 APEYMVILAGDH-IYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFG-VMHVNEKDEI 182
Query: 267 SHYVEKPSTFVST-------LVNCGVYLFS----LDIFQNIAAVFQSKQDEFYNGNYMVN 315
++EKP+ L + G+Y+F ++ + AA S +D F
Sbjct: 183 IDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRD-F-------- 233
Query: 316 GKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIY------------AN- 362
GKD II + GKA ++ + + Y AN
Sbjct: 234 GKD-----------IIPYIVEHGKAVAHRFADSCVRSDFEHEP-YWRDVGTIDAYWQANI 281
Query: 363 -----RHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTA---------------- 401
L +Y P I + A + P A
Sbjct: 282 DLTDVVPDLDIYDKSWP----------------IWTYAEITPPAKFVHDDEDRRGSAVSS 325
Query: 402 IVGPNVSIDDGAV----IGPGVRI------KESIILQGASIGNHSLVLNSIVGRNSKVGN 451
+V + I A+ + GVR + +++L IG H+ + N ++ +
Sbjct: 326 VVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPE 385
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} Length = 191 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 27/92 (29%)
Query: 386 IGDVYIHSSASVHPTAI---------VGPNVSIDDGAV-----------IGPGVRIKESI 425
IGDV I +AS+ + VG +I D V IG V I S
Sbjct: 49 IGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSC 108
Query: 426 ILQGASIGNHSL------VLN-SIVGRNSKVG 450
IL ++GN++ V++ +++ S +
Sbjct: 109 ILHACTLGNNAFVGMGSIVMDRAVMEEGSMLA 140
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 26/114 (22%)
Query: 397 VHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV-LNSIVGRNSKVGNWSRV 455
+ P AI+ +V I D AVI I GA IG S++ +N+++G + VG
Sbjct: 94 IEPGAIIRDHVEIGDNAVIMMNATINI-----GAVIGEGSMIDMNAVLGGRATVGK---- 144
Query: 456 EGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLP 509
C A + PP I+ D V + N +VL
Sbjct: 145 ---NCHVGAGAVLAGVIEPPSAKP--------VIVEDDVVIGA-----NVVVLE 182
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 9e-05
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KGTR ++ PK P+ G P+I H +E + +I+I + D +
Sbjct: 13 KGTRMG--NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISS---PKEWMNHAEDNI 67
Query: 165 QEYKINIRY 173
++Y + R
Sbjct: 68 KKYISDDRI 76
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} Length = 189 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 33/98 (33%)
Query: 386 IGDVYIHSSASVHPTAI---------VGPNVSIDDGAV-----------------IGPGV 419
IGDV + SV P A+ +G S+ DG+V IG V
Sbjct: 35 IGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDV 94
Query: 420 RIKESIILQGASIGNHSL------VLN-SIVGRNSKVG 450
I +L G +IGN L +++ +IV V
Sbjct: 95 TIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVIVA 132
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} Length = 187 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 27/97 (27%)
Query: 386 IGDVYIHSSASVHPTAI---------VGPNVSIDDGAV-----------------IGPGV 419
IGDV + + P + +G +I DG+V IG V
Sbjct: 31 IGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDV 90
Query: 420 RIKESIILQGASIGNHSLV-LNSIVGRNSKVGNWSRV 455
+ ++L G +IGN LV + SIV + + + +
Sbjct: 91 TVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVMI 127
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 4e-04
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
K K L P G PM++ +EA L + +
Sbjct: 12 KEAWAERFG-VGSKALVPYRGRPMVEWVLEALYAA-GLSPVYV 52
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 6e-04
Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
+G R + PK P+ G P+ + ++P +KEI+++ + +
Sbjct: 14 QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVC---DPFFRDIFEEYE 67
Query: 165 QEYKINIRY 173
+ +++ +
Sbjct: 68 ESIDVDLSF 76
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* Length = 245 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 8e-04
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 107 TRFRPLSLDSP-KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
+R P KPL + G PMIQH E +QV + E+ +
Sbjct: 14 SRL-------PGKPLLDIVGKPMIQHVYERALQVAGVAEVWV 48
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 523 | |||
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 99.97 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 99.96 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 99.96 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 99.96 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 99.96 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 99.96 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 99.96 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.96 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 99.96 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 99.95 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.93 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.9 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.9 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.89 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.87 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.83 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.83 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.81 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.81 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.81 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.8 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.79 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.79 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.71 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.71 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.7 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.7 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.68 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.68 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.67 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.66 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.66 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.66 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.66 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.66 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.66 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.66 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.65 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.65 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.65 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.65 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.65 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.65 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.64 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.63 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.63 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.63 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.63 | |
| 1914_A | 232 | Signal recognition particle 9/14 fusion protein; A | 99.63 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.63 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.63 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.63 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.63 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.63 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.62 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.62 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.62 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.61 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.61 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.6 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.6 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.59 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.58 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.57 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.56 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.56 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.56 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.56 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.54 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.54 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.54 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.53 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.52 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.51 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.51 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.5 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 99.5 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.5 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.49 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.49 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.49 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.49 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.48 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.48 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.48 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.47 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.47 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.47 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.46 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 99.46 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.46 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 99.45 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.45 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.45 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.45 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.44 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.44 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.44 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.43 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.43 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.43 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.4 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 99.4 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 99.38 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.37 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.36 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 99.35 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 99.34 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.32 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.32 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.32 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.3 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 99.3 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.29 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 99.29 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 99.28 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 99.26 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 99.25 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.25 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 99.23 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.23 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 99.23 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.22 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.2 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 99.2 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.18 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 99.18 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.18 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.17 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 99.17 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.14 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 99.12 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 99.09 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 99.08 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 99.06 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 99.02 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 99.02 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 99.02 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 99.02 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.01 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.99 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.97 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.97 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.97 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.97 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.96 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.93 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.93 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.92 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.92 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.91 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.82 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.81 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.81 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.76 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.75 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.69 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.6 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.59 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.35 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.07 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 96.87 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 96.26 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 89.08 |
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=393.58 Aligned_cols=373 Identities=20% Similarity=0.220 Sum_probs=274.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
+.+|||||| +||||+|+| ||||+||+|||||+|+|+++.++ |+++|+||++|+.+++++|+.+..+.++.++.|
T Consensus 13 ~~vvILAaG--~GtRm~~~~---pK~l~pv~gkp~i~~~l~~~~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 86 (501)
T 3st8_A 13 TAVLVLAAG--PGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKL-APQRLIVVLGHDHQRIAPLVGELADTLGRTIDV 86 (501)
T ss_dssp EEEEEEECS--CCGGGCCSS---CGGGCEETTEEHHHHHHHHHHHH-CCSEEEEEECTTHHHHHHHHHHHHHHHTSCCEE
T ss_pred ceEEEECCc--CcccCCCCC---CHHHeEECChhHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEEE
Confidence 468999999 999999954 99999999999999999999996 999999999999999999998865668889999
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc----cc-hH-H--HHHHHHhcCCcceEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE----IR-SD-V--VILMHSLYSMAILVTVM 242 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~----i~-~D-~--l~~~h~~~~~~~~~tv~ 242 (523)
+.|++++| ||+|++ ++++. +..+. +|+++ ++ .+ + ++++|+..+ ++++++
T Consensus 87 ~~q~~~lG-----------------Ta~Av~~a~~~l~~~~~~~-~lvl~gd~~l~~~~~~~~l~~~h~~~~--~~~ti~ 146 (501)
T 3st8_A 87 ALQDRPLG-----------------TGHAVLCGLSALPDDYAGN-VVVTSGDTPLLDADTLADLIATHRAVS--AAVTVL 146 (501)
T ss_dssp EECSSCCC-----------------HHHHHHHHHTTSCTTCCSE-EEEEETTCTTCCHHHHHHHHHHHHHTT--CSEEEE
T ss_pred EEcCCCCC-----------------cHHHHHHHHHHhccccccc-eeeecCcceeecHHHHHHHHHHHhhcc--ccceEe
Confidence 99999999 999999 77886 33456 77776 22 23 2 788999888 899999
Q ss_pred EEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC----cccceeeeeEEEeeHHHHHHHHHhhcc-c-ccccccccccccC
Q psy17795 243 ATEATRQQSVYYGCIVRKQQTSEISHYVEKPST----FVSTLVNCGVYLFSLDIFQNIAAVFQS-K-QDEFYNGNYMVNG 316 (523)
Q Consensus 243 ~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~----~~~~l~~~Giyif~~~il~~l~~~~~~-~-~~e~~~~~~~~~~ 316 (523)
+.+++ +|..||.+..|++ |+|..|.|||+. ...+++++|+|+|++++|..+...... + ++|||+
T Consensus 147 ~~~~~--dp~~yG~i~~~~~-g~v~~ivEk~~~~~~~~~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~yl------- 216 (501)
T 3st8_A 147 TTTLD--DPFGYGRILRTQD-HEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYL------- 216 (501)
T ss_dssp EEECS--CCTTSCEEEECTT-CCEEEEECGGGCCHHHHHCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCT-------
T ss_pred eeccC--Cchhccccccccc-eeEEeeccccCCChhhccceeeeceeeeecchhHHHhhhhhcccccccccch-------
Confidence 99884 6889999999987 999999999753 356899999999999988766543332 2 678876
Q ss_pred CCCCcccccchhhhhhhhhcCCc-EEEEEcchhHhhhccchh--hhhccHHH---------HhhhcccCCcccccC----
Q psy17795 317 KDTDFNHIQLEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGS--AIYANRHY---------LQLYKTRHPERLQCS---- 380 (523)
Q Consensus 317 ~~~~~~~~~~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~d--yl~an~~~---------l~~~~~~~~~~~~~~---- 380 (523)
++++..+...+. +.++....+|...+.... +......+ +.......|......
T Consensus 217 -----------td~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~ 285 (501)
T 3st8_A 217 -----------TDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVT 285 (501)
T ss_dssp -----------THHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCE
T ss_pred -----------hhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceE
Confidence 688888887776 777777777765544322 22221111 111111122111100
Q ss_pred --------CCceEecCcE---------------------------------ECCCCEECCCCEECCCcEECCCCEECCCC
Q psy17795 381 --------SQCKTIGDVY---------------------------------IHSSASVHPTAIVGPNVSIDDGAVIGPGV 419 (523)
Q Consensus 381 --------~~~~i~~~~~---------------------------------i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~ 419 (523)
+...+.+++. +++++.|++.+.++++++|+++|.||.++
T Consensus 286 IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v 365 (501)
T 3st8_A 286 IGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFV 365 (501)
T ss_dssp ECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETE
T ss_pred ECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeE
Confidence 1222222222 23334444555555666677777777777
Q ss_pred EEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCC
Q psy17795 420 RIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGE 499 (523)
Q Consensus 420 ~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~ 499 (523)
.|.+++||++|.|++.+.|.+++||++|.||+++.+.+. ....+.+++||++|+||.++.+.++ +.||++|.||+|
T Consensus 366 ~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~---dg~~~~~t~IGd~~~iG~~~~l~~~-v~Ig~~~~i~ag 441 (501)
T 3st8_A 366 EVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNY---DGTSKRRTTVGSHVRTGSDTMFVAP-VTIGDGAYTGAG 441 (501)
T ss_dssp EEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECB---CSSSBCCEEECTTCEECTTCEEESS-EEECTTCEECTT
T ss_pred EEccceecCCcEEeccceecCceEcCCCEECCCEEEEcc---cCCcccCCEECCCcEECCCCEEcCC-cEECCCCEECCC
Confidence 777788999999999999999999999999999998652 1223446889999999999999999 677999999999
Q ss_pred cEEeCeEEcCCcEeCCCCC
Q psy17795 500 LIVLNSIVLPYKELTRSFK 518 (523)
Q Consensus 500 ~~i~~~~v~~~~~i~~~~~ 518 (523)
++|... |.|++..-.+.|
T Consensus 442 s~v~~d-vp~~~l~~~~~~ 459 (501)
T 3st8_A 442 TVVRED-VPPGALAVSAGP 459 (501)
T ss_dssp CEECSC-BCTTCEECCCCC
T ss_pred CEECcc-cCCCCeEEeccC
Confidence 999443 245554434444
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=384.44 Aligned_cols=359 Identities=17% Similarity=0.273 Sum_probs=240.5
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhcc--
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEY-- 167 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~-- 167 (523)
|+.|+||||||| +|+||+|||...||||+|++|+ |||+|+|++|.+. |+++|+|++++..+++.+++.+. |
T Consensus 18 ~~~~~avILAaG--~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~---~~~ 91 (451)
T 1yp2_A 18 SRSVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRA---YAS 91 (451)
T ss_dssp HHHEEEEEC--------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHT-TCCEEEEEESCCCHHHHHHHHHH---CC-
T ss_pred ccceEEEEECCC--CCCcccchhcCCcceeeEECCcceeHHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHhhh---hhc
Confidence 456899999999 9999999999999999999999 9999999999986 99999999999888999998752 2
Q ss_pred Ce-------eEEEEecc-cccchhhhhcccccccccCCCchhHHH--Hhhccc-CCcceEEEEc--cc--hHH--HHHHH
Q psy17795 168 KI-------NIRYLQEF-WDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW-VQEAVYFTLE--IR--SDV--VILMH 230 (523)
Q Consensus 168 ~~-------~i~~~~~~-~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~-~~d~~~Lvl~--i~--~D~--l~~~h 230 (523)
++ .+.++... ++. ..+|..| |+++++ ++++.. ..++ ||+++ .+ .|+ ++++|
T Consensus 92 ~~~~~~~~~~v~i~~~~~~~~---------~~~~~~G--t~~al~~a~~~~~~~~~~~-~lv~~~D~~~~~~l~~l~~~~ 159 (451)
T 1yp2_A 92 NMGGYKNEGFVEVLAAQQSPE---------NPDWFQG--TADAVRQYLWLFEEHTVLE-YLILAGDHLYRMDYEKFIQAH 159 (451)
T ss_dssp -------CCEEEEEESCSSTT---------SCCCCCS--HHHHHHHTHHHHTTSCCSE-EEEECSCEECCCCHHHHHHHH
T ss_pred ccccccccCcEEEeccccccc---------ccccccC--cHHHHHHHHHHHHhcCCCe-EEEecCcEEEcCCHHHHHHHH
Confidence 11 13333211 111 1345566 999999 666652 2356 88887 22 345 88888
Q ss_pred HhcCCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc---------------------ccceeeeeEEEee
Q psy17795 231 SLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF---------------------VSTLVNCGVYLFS 289 (523)
Q Consensus 231 ~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~---------------------~~~l~~~Giyif~ 289 (523)
++.+ +++|+++.+...+++..||++..|++ ++|.+|.|||... ..+++++|+|+|+
T Consensus 160 ~~~~--~~~tl~~~~~~~~~~~~~g~v~~d~~-~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~ 236 (451)
T 1yp2_A 160 RETD--ADITVAALPMDEKRATAFGLMKIDEE-GRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVIS 236 (451)
T ss_dssp HHTT--CSEEEEEEEECHHHHTTSEEEEECTT-SBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEE
T ss_pred HHcC--CcEEEEEEEcChhhcccCCEEEECCC-CCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEc
Confidence 8877 88899888775335678999999976 9999999998632 3578999999999
Q ss_pred HHHHH-HHHHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 290 LDIFQ-NIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 290 ~~il~-~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
+++|. .+.+.+.. ..+|..++++.++++| +++++..+++|.|++++++|+++++.++.
T Consensus 237 ~~~l~~~l~~~~~~--------------------~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~ 296 (451)
T 1yp2_A 237 KDVMLNLLRDKFPG--------------------ANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 296 (451)
T ss_dssp HHHHHHHHHTTCTT--------------------CCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhhccc--------------------ccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhc
Confidence 99874 45543211 1234468888888774 69999999999999999999999998876
Q ss_pred hhcc----cCCcc-ccc----CCCceEe----cCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCC-----
Q psy17795 368 LYKT----RHPER-LQC----SSQCKTI----GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQG----- 429 (523)
Q Consensus 368 ~~~~----~~~~~-~~~----~~~~~i~----~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~----- 429 (523)
+... ..|.. +.. .+++.|. .++.|+++|.|++ +.|. +++||++|.||++|.|.++++..+
T Consensus 297 ~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~-~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~ 374 (451)
T 1yp2_A 297 KPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDSLLMGADYYET 374 (451)
T ss_dssp SSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEE-SCEECTTCEECTTCEEESCEECCCSSCCC
T ss_pred ccccchhccCCCCeeccCCccCCCeEEcceEEeCeEECCCCEEcc-eEEe-ccEECCCCEECCCCEEcCceEECCCCccc
Confidence 5310 01100 000 0121110 1233444444432 3332 667777777777777766555555
Q ss_pred --------------CEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCE
Q psy17795 430 --------------ASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVT 495 (523)
Q Consensus 430 --------------~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~ 495 (523)
+.||++|.|.+++||++|.||+++.|.+... ...+.+||++++||+++ ++||++++
T Consensus 375 ~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~~~----~~~~~~ig~~~~ig~~~------v~Ig~~a~ 444 (451)
T 1yp2_A 375 DADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDN----VQEAARETDGYFIKSGI------VTVIKDAL 444 (451)
T ss_dssp HHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCSSC----CSCEEEGGGTEEEETTE------EEECTTCE
T ss_pred ccccccccccCceeEEECCCCEEeccEeCCCcEECCCCEEeCCcc----cccCceeCCCEEEcCCE------EEECCCcE
Confidence 7777777777777777777777777765311 01223566666665554 55666666
Q ss_pred ECCCcEE
Q psy17795 496 VPGELIV 502 (523)
Q Consensus 496 Ig~~~~i 502 (523)
||+|++|
T Consensus 445 i~agsvv 451 (451)
T 1yp2_A 445 IPSGIII 451 (451)
T ss_dssp ECTTCBC
T ss_pred ECCCccC
Confidence 7666653
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-44 Score=372.11 Aligned_cols=307 Identities=20% Similarity=0.316 Sum_probs=211.6
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|+||||||| +|+||+|||...||+|+|++|+|||+|+|++|.+. ++++|+|++++. +++++.+.. . ++.+
T Consensus 1 m~aiIlA~G--~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~-~~~~i~vv~~~~---i~~~~~~~~--~--~i~~ 70 (401)
T 2ggo_A 1 MKAFILAAG--SGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKC-GIRDITVIVSSK---NKEYFEKKL--K--EISI 70 (401)
T ss_dssp CEEEEECCC--CCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECGG---GHHHHHHHC--T--TCEE
T ss_pred CeEEEEcCc--CccccCcccCCCCcceeeECCEeHHHHHHHHHHHC-CCCEEEEEeCHH---HHHHhhccC--C--cEEE
Confidence 679999999 99999999999999999999999999999999986 899999999875 777776521 1 3455
Q ss_pred Eeccc-ccchhhhhcccccccccCCCchhHHHHhhcccCCcceEEEEc---cch--HHHHHHHHhcCCcceEEEEEEeeC
Q psy17795 174 LQEFW-DIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLE---IRS--DVVILMHSLYSMAILVTVMATEAT 247 (523)
Q Consensus 174 ~~~~~-~~g~~~~~~~~~~~~~~g~~ta~al~~~~i~~~~d~~~Lvl~---i~~--D~l~~~h~~~~~~~~~tv~~~~~~ 247 (523)
+.+++ ++| ++++++ .... .++ +|+++ .+. +.+.+... . +++++++.+..
T Consensus 71 ~~~~~~~~g-----------------~~~~l~-~~~~--~~~-~lv~~~D~~~~~~~~~~~l~~--~--~~~~i~~~~~~ 125 (401)
T 2ggo_A 71 VTQKDDIKG-----------------TGAAIL-SAKF--NDE-ALIIYGDLFFSNEKEICNIIT--L--KENAIIGVKVS 125 (401)
T ss_dssp EECCTTCCB-----------------STTTGG-GCCC--SSE-EEEEETTEEESCSHHHHHHTT--C--SSEEEEEEECS
T ss_pred EeCCCCCCC-----------------hHHHHH-Hhcc--CCC-EEEEeCccccccHHHHHHHHH--h--cCCEEEEEEcC
Confidence 65554 556 888887 1111 356 77776 221 11222222 3 56788777764
Q ss_pred CCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccch
Q psy17795 248 RQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLE 327 (523)
Q Consensus 248 ~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 327 (523)
++..|+.+..|++ +++..+.|||..+.+++.++|+|+|++++|+.+++......+++ ++
T Consensus 126 --~~~~~~~v~~~~~-g~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~-----------------~~- 184 (401)
T 2ggo_A 126 --NPKDYGVLVLDNQ-NNLSKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISISERGEL-----------------EL- 184 (401)
T ss_dssp --CCSSSCEEEECTT-SSEEEEECSCSSCSCSEEEEEEEEEETHHHHHHHHSCCCSSSCB-----------------CH-
T ss_pred --CCcceeEEEECCC-CeEEEEEECCCCCCCcEEEEEEEEEcHHHHHHhhhcCcCCCCce-----------------EH-
Confidence 4567998888876 89999999998778899999999999999988765322222233 23
Q ss_pred hhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHHHhhhccc-CCccccc----------------CCCceEecCc
Q psy17795 328 KEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTR-HPERLQC----------------SSQCKTIGDV 389 (523)
Q Consensus 328 ~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~-~~~~~~~----------------~~~~~i~~~~ 389 (523)
+++++.+ ..+ ++.++..+++|.+++|++||..+++.++++.... ....+.. .+.+.|.+++
T Consensus 185 ~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ 263 (401)
T 2ggo_A 185 TDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPV 263 (401)
T ss_dssp HHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSE
T ss_pred HHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCe
Confidence 5788877 544 6899998899999999999999999888764310 0001110 0233444444
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
.||+++.|++++.|+++++||++|.|+++|.|++++|++++.|++++.|.+++||++|.||+++.|.+
T Consensus 264 ~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~ 331 (401)
T 2ggo_A 264 YIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIAN 331 (401)
T ss_dssp EECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEECC
T ss_pred EECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEcC
Confidence 55555555555555555555555555555555556666666666666666666666666666666653
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=369.82 Aligned_cols=342 Identities=17% Similarity=0.273 Sum_probs=257.2
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~ 169 (523)
|..|+||||||| .|+||+|||...||+|+|++|+ |||+|+|++|.+. |+++|+|++++..+++.+++.+. |+.
T Consensus 10 m~~~~avILAaG--~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~---~~~ 83 (420)
T 3brk_X 10 ARDAMAYVLAGG--RGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNS-GIRRIGVATQYKAHSLIRHLQRG---WDF 83 (420)
T ss_dssp GGGEEEEEEECC--CCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHHHHH---SCC
T ss_pred hhceEEEEEcCC--CCCccchhhcCCcccccccCCCCcHHHHHHHHHHhC-CCCeEEEEeCCChHHHHHHHhhh---hcc
Confidence 446899999999 9999999999999999999999 9999999999986 99999999999888999998762 332
Q ss_pred -------eEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhccc-CCcceEEEEc--cc--hHH--HHHHHHhc
Q psy17795 170 -------NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW-VQEAVYFTLE--IR--SDV--VILMHSLY 233 (523)
Q Consensus 170 -------~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~-~~d~~~Lvl~--i~--~D~--l~~~h~~~ 233 (523)
.+.++...... ...+|+.| |+++++ ++++.. ..++ ||+++ .+ .|+ ++++|++.
T Consensus 84 ~~~~~~~~v~i~~~~~~~--------~~~~~~~G--t~~al~~a~~~l~~~~~~~-~lv~~~D~~~~~~l~~l~~~~~~~ 152 (420)
T 3brk_X 84 FRPERNESFDILPASQRV--------SETQWYEG--TADAVYQNIDIIEPYAPEY-MVILAGDHIYKMDYEYMLQQHVDS 152 (420)
T ss_dssp CCGGGTCEEEEECCC---------------CCCC--HHHHHHTTHHHHHHHCCSE-EEEEESSCEECBCTHHHHHHHHHT
T ss_pred ccccccCCEEEeCccccc--------cCCccccC--CHHHHHHHHHHHHhcCCCE-EEEecccEEEchHHHHHHHHHHHc
Confidence 24343321100 01245566 999999 666652 2356 88877 22 344 78888887
Q ss_pred CCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcc-------cceeeeeEEEeeHHHH-HHHHHhhccccc
Q psy17795 234 SMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFV-------STLVNCGVYLFSLDIF-QNIAAVFQSKQD 305 (523)
Q Consensus 234 ~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~-------~~l~~~Giyif~~~il-~~l~~~~~~~~~ 305 (523)
+ +++|+++.+.+.+++..||.+..|++ ++|.+|.|||.... ++++++|+|+|++++| +.+.+......
T Consensus 153 ~--~~~tl~~~~~~~~~~~~~g~v~~d~~-g~v~~~~ekp~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~- 228 (420)
T 3brk_X 153 G--ADVTIGCLEVPRMEATGFGVMHVNEK-DEIIDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPT- 228 (420)
T ss_dssp T--CSEEEEEEEEETTGGGGSEEEEECTT-SBEEEEEESCSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC---
T ss_pred C--CeEEEEEeecCccccCcccEEEECCC-CcEEEeEeCCCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccCC-
Confidence 7 88899888775445679999998876 99999999987544 6799999999999986 44433221110
Q ss_pred ccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEc-----------chhHhhhccchhhhhccHHHHhhhcccCC
Q psy17795 306 EFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQT-----------SKWWSQLKSAGSAIYANRHYLQLYKTRHP 374 (523)
Q Consensus 306 e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~-----------~g~w~dIgt~~dyl~an~~~l~~~~~~~~ 374 (523)
+..+|.+|+++.++++++++++.. +++|.|++|+++|+++++.++.......
T Consensus 229 ----------------~~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~- 291 (420)
T 3brk_X 229 ----------------SSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLD- 291 (420)
T ss_dssp ------------------------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSC-
T ss_pred ----------------ccccchHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhh-
Confidence 112344788998888889999998 8899999999999999998886532111
Q ss_pred cccccCCCceEecCcEECCCCEECC-----CCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEE
Q psy17795 375 ERLQCSSQCKTIGDVYIHSSASVHP-----TAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKV 449 (523)
Q Consensus 375 ~~~~~~~~~~i~~~~~i~~~~~I~~-----~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~I 449 (523)
+. .+...+.+.+.+++++.|++ ++.+ .++.||++|+| +++.|.+|+||++|.||++|.|.+|+||++|.|
T Consensus 292 --~~-~~~~~i~~~~~i~~~~~i~~~~~~~~~~i-~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i 366 (420)
T 3brk_X 292 --IY-DKSWPIWTYAEITPPAKFVHDDEDRRGSA-VSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKI 366 (420)
T ss_dssp --TT-CCSSCCCCCCCCCCCCEEECBCSSCBCEE-ESCEECSSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTTCEE
T ss_pred --cC-CCCCceeeccccCCCcEEecccccCCcEe-cCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCCCEE
Confidence 11 12334555566666666666 6777 68999999999 889998999999999999999999999999999
Q ss_pred CCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 450 GNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 450 g~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
|++|.|.+ ++||++|.||+|++|.+.
T Consensus 367 ~~~~~i~~------------------------------~~ig~~~~i~~~~~i~~~ 392 (420)
T 3brk_X 367 GRHAQLSN------------------------------VVIDHGVVIPEGLIVGED 392 (420)
T ss_dssp CTTCEEEE------------------------------EEECTTCEECTTCEESSC
T ss_pred CCCCEEec------------------------------eEECCCCEECCCCEEeCC
Confidence 99999975 677888888888877443
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-42 Score=365.61 Aligned_cols=373 Identities=19% Similarity=0.254 Sum_probs=252.4
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
-++|||||| +|+||++ .+||+|+|++|+|||+|++++|.+. ++++|+|++++..+++.+++.+ ++.+
T Consensus 12 ~~~vIlAaG--~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iivv~~~~~~~i~~~~~~-------~i~~ 78 (468)
T 1hm9_A 12 NFAIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKAELVEEVLAG-------QTEF 78 (468)
T ss_dssp EEEEEECCC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTT-CCSEEEEEECTTHHHHHHSSSS-------SSEE
T ss_pred CcEEEEcCC--CCccCCC---CCCcEeeEECCccHHHHHHHHHHhc-CCCCEEEEECCCHHHHHHHhCC-------CcEE
Confidence 369999999 9999997 8899999999999999999999986 8999999999887777776643 2445
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c--c--hHH--HHHHHHhcCCcceEEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I--R--SDV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i--~--~D~--l~~~h~~~~~~~~~tv~~ 243 (523)
+.++++.| ++++++ .+++....+. ||+++ . + .++ +++.|++.+ +++++++
T Consensus 79 v~~~~~~G-----------------~~~sl~~a~~~~~~~~~~-vlv~~~D~P~i~~~~i~~l~~~~~~~~--~~~~i~~ 138 (468)
T 1hm9_A 79 VTQSEQLG-----------------TGHAVMMTEPILEGLSGH-TLVIAGDTPLITGESLKNLIDFHINHK--NVATILT 138 (468)
T ss_dssp EECSSCCC-----------------HHHHHHTTHHHHTTCCSE-EEEEETTCTTCCHHHHHHHHHHHHHTT--CSEEEEE
T ss_pred EeCCccCC-----------------hHHHHHHHHHHhccCCCe-EEEEeCCccccCHHHHHHHHHHHHhcC--CcEEEEE
Confidence 55655666 999998 6666522356 88877 2 3 234 788888777 7888888
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCC----CcccceeeeeEEEeeHHH-HHHHHHhhccc-ccccccccccccCC
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPS----TFVSTLVNCGVYLFSLDI-FQNIAAVFQSK-QDEFYNGNYMVNGK 317 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~----~~~~~l~~~Giyif~~~i-l~~l~~~~~~~-~~e~~~~~~~~~~~ 317 (523)
.+.. ++..||.+..|++ ++|..|.|||. ....+++++|+|+|+++. ++.+.+..... .+++++
T Consensus 139 ~~~~--~~~~~g~v~~d~~-g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~-------- 207 (468)
T 1hm9_A 139 AETD--NPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYI-------- 207 (468)
T ss_dssp EECS--CCTTSCEEEECTT-CCEEEEECTTTCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCT--------
T ss_pred eccC--CCCceeEEEECCC-CCEEEEEECCCCChHHhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEH--------
Confidence 7763 5678999988876 89999999874 234679999999999984 45554432211 223332
Q ss_pred CCCcccccchhhhhhhhhcCC-cEEEEEcchhHhhhc--cchhhhhccHHHHhhhcccC--C-cccccCCCceEecCcEE
Q psy17795 318 DTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLK--SAGSAIYANRHYLQLYKTRH--P-ERLQCSSQCKTIGDVYI 391 (523)
Q Consensus 318 ~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIg--t~~dyl~an~~~l~~~~~~~--~-~~~~~~~~~~i~~~~~i 391 (523)
+|+++.+++.| +++++..+++|.+++ +++||..++..+..+..... + ..+.....+.+++++.|
T Consensus 208 ----------~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i 277 (468)
T 1hm9_A 208 ----------TDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEI 277 (468)
T ss_dssp ----------THHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEE
T ss_pred ----------HHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEE
Confidence 78999988877 599999999998855 99999999877654421100 0 00000013445566666
Q ss_pred CCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEc---------------
Q psy17795 392 HSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE--------------- 456 (523)
Q Consensus 392 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~--------------- 456 (523)
++++.|++++.|++++.||++|.|++++.|+++.||++|.|+ ++.|.+++||++|.||++|.|.
T Consensus 278 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~ 356 (468)
T 1hm9_A 278 APEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFV 356 (468)
T ss_dssp CTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEE
T ss_pred CCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEECCccEECCCc
Confidence 666666666666666666666666666666555555555555 5555555555555555555543
Q ss_pred ---CCCCCCCCCC------CceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCCcEeC
Q psy17795 457 ---GTPCDPNPNK------AFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPYKELT 514 (523)
Q Consensus 457 ---~~~~~~~~~~------~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~ 514 (523)
+..++.+..- +.+.||+++.||+++.+.. ..++||++|.||++++| .+++|++++.|.
T Consensus 357 ~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s~v~ 436 (468)
T 1hm9_A 357 EVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTIT 436 (468)
T ss_dssp EEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEEC
T ss_pred EEeeeEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEECCCCEEC
Confidence 2222111100 1245777777777766544 12677888888877765 355666777777
Q ss_pred CCCCCcc
Q psy17795 515 RSFKNEI 521 (523)
Q Consensus 515 ~~~~~~~ 521 (523)
+++|...
T Consensus 437 ~~v~~~~ 443 (468)
T 1hm9_A 437 KDVPADA 443 (468)
T ss_dssp SCBCTTC
T ss_pred CCCCCCC
Confidence 7776443
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=353.59 Aligned_cols=373 Identities=18% Similarity=0.215 Sum_probs=272.1
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCee
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~ 170 (523)
+|.|.||||||| .|+||++ ..||+|+|++|+|||+|+|+.|.+. ++++++|++++..+++.+++.+ ++
T Consensus 3 ~~~~~aiIlA~G--~g~Rl~~---~~pK~l~~i~gkpli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~----~~-- 70 (456)
T 2v0h_A 3 KKALSAVILAAG--KGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQL-GSENIHLIYGHGGDLMRTHLAN----EQ-- 70 (456)
T ss_dssp -CCEEEEEECCC--CCGGGCS---SSCGGGSEETTEEHHHHHHHHHHHT-TCSCEEEEECTTHHHHHHHTTT----CC--
T ss_pred CCcceEEEECCC--CCcccCC---CCCccccEECCccHHHHHHHHHHhC-CCCcEEEEeCCCHHHHHHHhhc----CC--
Confidence 456789999999 9999987 7899999999999999999999986 8999999999987788887765 23
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c--ch--HH--HHHHHHhcCCcceEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I--RS--DV--VILMHSLYSMAILVT 240 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i--~~--D~--l~~~h~~~~~~~~~t 240 (523)
+.++.+++++| ++++++ .+++.. .+. +|+++ . +. ++ +++.|++ ++++
T Consensus 71 ~~~v~~~~~~g-----------------~~~~~~~~~~~~~~-~~~-vlv~~~D~P~i~~~~i~~l~~~~~~----~~~~ 127 (456)
T 2v0h_A 71 VNWVLQTEQLG-----------------TAHAVQQAAPFFKD-NEN-IVVLYGDAPLITKETLEKLIEAKPE----NGIA 127 (456)
T ss_dssp CEEEECSCCCC-----------------HHHHHHHHGGGCCT-TSE-EEEEETTCTTCCHHHHHHHHHHCCT----TSEE
T ss_pred cEEEeCCCCCC-----------------cHHHHHHHHHhcCC-CCe-EEEEcCCcceeCHHHHHHHHHHHhc----CCEE
Confidence 44566666667 899998 666642 356 88877 2 32 22 4444433 4567
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC----cccceeeeeEEEeeHHHH-HHHHHhhccc-ccccccccccc
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST----FVSTLVNCGVYLFSLDIF-QNIAAVFQSK-QDEFYNGNYMV 314 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~----~~~~l~~~Giyif~~~il-~~l~~~~~~~-~~e~~~~~~~~ 314 (523)
+++.+.. ++..||.+..| + +++..+.|||.. ....++++|+|+|+++.+ +.++...... ++++++
T Consensus 128 ~~~~~~~--~~~~~g~v~~~-~-g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~----- 198 (456)
T 2v0h_A 128 LLTVNLD--NPTGYGRIIRE-N-GNVVAIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYL----- 198 (456)
T ss_dssp EEEEECS--SCTTSCEEEEE-T-TEEEEEECTTTCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCCG-----
T ss_pred EEEeecC--CCCccceEEEc-C-CcEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHHHhccccccccEEH-----
Confidence 7776653 45679988887 5 899999998752 245789999999999854 5554322211 223332
Q ss_pred cCCCCCcccccchhhhhhhhhcCC-cEEEEEcchhH--hhhccchhhhhccHHHHhhhccc--CC-cccccCCCceEecC
Q psy17795 315 NGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWW--SQLKSAGSAIYANRHYLQLYKTR--HP-ERLQCSSQCKTIGD 388 (523)
Q Consensus 315 ~~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w--~dIgt~~dyl~an~~~l~~~~~~--~~-~~~~~~~~~~i~~~ 388 (523)
+++++.+...+ ++.++..+++| .+++|++||..++..+..+.... .+ ..+...+.+.++++
T Consensus 199 -------------~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 265 (456)
T 2v0h_A 199 -------------TDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGT 265 (456)
T ss_dssp -------------GGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEE
T ss_pred -------------HHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCc
Confidence 68888888776 58889887655 58889999999988665432110 01 11111125678888
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCC-CCCCC----
Q psy17795 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGT-PCDPN---- 463 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~-~~~~~---- 463 (523)
+.|++++.|++++.|+++++||++|.|+++|.|.+++||++|.|+++|+|.+++||++|.|++++.|.+. .++.+
T Consensus 266 ~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig 345 (456)
T 2v0h_A 266 LEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVG 345 (456)
T ss_dssp EEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEE
T ss_pred eEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEEC
Confidence 8899999999998888888999999999999998888888888888888888888888888887777532 22211
Q ss_pred -------------CCC------CceecCCCCeecCCCeecC-------CcEEeCCCCEECCCcEE-e------CeEEcCC
Q psy17795 464 -------------PNK------AFAKMDNPPLFNSNGKLNP-------SITILGDGVTVPGELIV-L------NSIVLPY 510 (523)
Q Consensus 464 -------------~~~------~~v~I~~~~~ig~~~~i~~-------g~~iIG~~~~Ig~~~~i-~------~~~v~~~ 510 (523)
..- +.+.||++|+||+++.+.. + ++||++|+||++++| . +++|+++
T Consensus 346 ~~~~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~-v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~ 424 (456)
T 2v0h_A 346 NFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFK-TIIGDDVFVGSDTQLVAPVKVANGATIGAG 424 (456)
T ss_dssp EEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCC-EEECSSCEECTTCEEEESEEECTTCEECTT
T ss_pred CCCEEeccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCC-cEECCCCEECCCCEEcCCcEECCCCEECCC
Confidence 000 2357899999999887765 5 788999999999887 3 4566677
Q ss_pred cEeCCCCCCcc
Q psy17795 511 KELTRSFKNEI 521 (523)
Q Consensus 511 ~~i~~~~~~~~ 521 (523)
+.|.+++|...
T Consensus 425 s~v~~~v~~~~ 435 (456)
T 2v0h_A 425 TTITRDVGENE 435 (456)
T ss_dssp CEECSCBCTTC
T ss_pred CEECCCcCCCC
Confidence 77777777443
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-41 Score=355.16 Aligned_cols=308 Identities=19% Similarity=0.246 Sum_probs=216.3
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|.|.||||||| .|+||++ .+||+|+|++|+|||+|+++.|.+. ++++|+|++++..+++++++.+ + ++
T Consensus 7 ~~~~aiIlA~G--~g~Rl~~---~~pK~l~~i~g~pli~~~l~~l~~~-~~~~i~vv~~~~~~~i~~~~~~----~--~~ 74 (459)
T 4fce_A 7 SSMSVVILAAG--KGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKL-GAQHVHLVYGHGGELLKKTLAD----P--SL 74 (459)
T ss_dssp CCEEEEEEECC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHH-TCSCEEEEESSCHHHHHHHC-----------
T ss_pred CcceEEEECCC--CCccCCC---CCCcccCeeCCeeHHHHHHHHHHhC-CCCcEEEEeCCCHHHHHHHhcc----C--Cc
Confidence 57899999999 9999998 8999999999999999999999986 8999999999988888888765 2 34
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cchH--H--HHHHHHhcCCcceEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IRSD--V--VILMHSLYSMAILVTV 241 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~~D--~--l~~~h~~~~~~~~~tv 241 (523)
.++.+++.+| ++++++ .+++.. .+. ||+++ ++.. + +++.|++ .++++
T Consensus 75 ~~v~~~~~~g-----------------~~~~i~~~~~~~~~-~~~-~lv~~~D~P~i~~~~i~~l~~~~~~----~~~~~ 131 (459)
T 4fce_A 75 NWVLQAEQLG-----------------TGHAMQQAAPHFAD-DED-ILMLYGDVPLISVDTLQRLLAAKPE----GGIGL 131 (459)
T ss_dssp CEEECSSCCC-----------------HHHHHHHHGGGSCT-TSE-EEEEETTCTTCCHHHHHHHHHHCCT----TSEEE
T ss_pred EEEeCCCCCC-----------------cHHHHHHHHHhcCC-CCc-EEEEeCCcccCCHHHHHHHHHHHhh----CCEEE
Confidence 4565666666 899999 666652 356 88877 2322 2 4444432 45677
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecCC----CcccceeeeeEEEeeHHHH-HHHHHhhcc-ccccccccccccc
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKPS----TFVSTLVNCGVYLFSLDIF-QNIAAVFQS-KQDEFYNGNYMVN 315 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~----~~~~~l~~~Giyif~~~il-~~l~~~~~~-~~~e~~~~~~~~~ 315 (523)
++.+.. ++..||.+..| + ++|..+.|||. ....+++++|+|+|+++.+ +.+...... .+++|++
T Consensus 132 ~~~~~~--~~~~~g~v~~~-~-g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~------ 201 (459)
T 4fce_A 132 LTVKLD--NPSGYGRIVRE-N-GDVVGIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYI------ 201 (459)
T ss_dssp EEEECS--CCTTSCEEEEE-T-TEEEEEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCCT------
T ss_pred EEEecC--CCCcccEEEeC-C-CcEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHHhCccccCCcEEH------
Confidence 776653 56789998887 4 89999999863 3456899999999999866 555443221 1334433
Q ss_pred CCCCCcccccchhhhhhhhhcCC-cEEEEEcchhHh--hhccchhhhhccHHHHhhhccc--CC-cccccCCCceEecCc
Q psy17795 316 GKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWS--QLKSAGSAIYANRHYLQLYKTR--HP-ERLQCSSQCKTIGDV 389 (523)
Q Consensus 316 ~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~--dIgt~~dyl~an~~~l~~~~~~--~~-~~~~~~~~~~i~~~~ 389 (523)
+|+++.+.+.| ++.++..+++|. +++|++||..++..+..+.... .+ ..+...+...+++++
T Consensus 202 ------------~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~ 269 (459)
T 4fce_A 202 ------------TDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGEL 269 (459)
T ss_dssp ------------THHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEE
T ss_pred ------------HHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcE
Confidence 68888888876 599999988774 5889999999976665432110 00 011111234566666
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEc
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE 456 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~ 456 (523)
.|++++.|++++.|++++.||++|.|+++|.|+++.||++|.|+++|+|.+++||++|.||++|.|.
T Consensus 270 ~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~ 336 (459)
T 4fce_A 270 THGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLR 336 (459)
T ss_dssp EECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEEC
T ss_pred EECCCcEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEEC
Confidence 7777777777777766677777777777777766667777777766666666666666666666664
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=276.24 Aligned_cols=232 Identities=21% Similarity=0.241 Sum_probs=192.7
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh------
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ------ 165 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~------ 165 (523)
|.|+||||||| .|+||+|+|..+||+|+||+|+|||+|+|+++.+. |+++|+|++++..+++.+|+.+...
T Consensus 1 M~~~avIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~ 77 (281)
T 3juk_A 1 MIKKCLFPAAG--YGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEA-GCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQ 77 (281)
T ss_dssp CCCEEEEECCS--CCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHH-TCCEEEEEECTTHHHHHHHTSCCC-------
T ss_pred CceEEEEECCc--CCcccCccccCCCcccceECCEEHHHHHHHHHHhC-CCCEEEEEecCCHHHHHHHHhcchhhhhhhh
Confidence 56789999999 99999999999999999999999999999999986 9999999999988999999875210
Q ss_pred --------------ccCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cchH-
Q psy17795 166 --------------EYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IRSD- 224 (523)
Q Consensus 166 --------------~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~~D- 224 (523)
.++..+.++.+.+++| |+++++ ++++. +++ |+|++ +..|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G-----------------t~~al~~a~~~l~--~~~-~lv~~~D~~~~~~~ 137 (281)
T 3juk_A 78 GTNKENALKSIRNIIEKCCFSYVRQKQMKG-----------------LGHAILTGEALIG--NEP-FAVILADDLCISHD 137 (281)
T ss_dssp -CCHHHHHHHHHHHHHHCEEEEEECSSCCC-----------------HHHHHHHTHHHHC--SSC-EEEECTTEEEECTT
T ss_pred cccchhhhhhhhccccCccEEEEecCCCCC-----------------cHHHHHHHHHHcC--CCC-EEEEeCCeeccCcc
Confidence 0356777777777777 999999 77775 356 88887 3345
Q ss_pred ----H--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcC--CCC--cEEEEeecCC--CcccceeeeeEEEeeHHH
Q psy17795 225 ----V--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQ--QTS--EISHYVEKPS--TFVSTLVNCGVYLFSLDI 292 (523)
Q Consensus 225 ----~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~--~~~--~V~~~~ekp~--~~~~~l~~~Giyif~~~i 292 (523)
+ ++++|.+.+ + .++++..++.+++..||++..|+ + | +|..|.|||. ...++++++|+|+|++++
T Consensus 138 ~~~~l~~l~~~~~~~~--~-~~v~~~~~~~~~~~~~g~v~~~~~~~-g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~ 213 (281)
T 3juk_A 138 HPSVLKQMTSLYQKYQ--C-SIVAIEEVALEEVSKYGVIRGEWLEE-GVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDI 213 (281)
T ss_dssp SCCHHHHHHHHHHHHC--S-CEEEEEECCTTTGGGSEEEEEEEEET-TEEEEEEEEESCCTTTCSCSEEEEEEEEECTTH
T ss_pred chHHHHHHHHHHHHcC--C-CEEEEEEechhhcccCCEEEeccCCC-CceEEeEEEECcCCCCCCcceeEEEEEEECHHH
Confidence 5 888888776 6 57777776656788999998885 5 7 9999999997 456789999999999999
Q ss_pred HHHHHHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhh
Q psy17795 293 FQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQL 368 (523)
Q Consensus 293 l~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~ 368 (523)
|+.+.+......+||++ +++++.+++.++++++..+++|.|++|+++|+++++.++..
T Consensus 214 l~~l~~~~~~~~~e~~l------------------~d~i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 214 FEILSETKPGKNNEIQI------------------TDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKK 271 (281)
T ss_dssp HHHHHTCCCCGGGSCCH------------------HHHHHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCceeH------------------HHHHHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 98887643223455554 79999999888999999999999999999999999988864
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-31 Score=258.90 Aligned_cols=227 Identities=19% Similarity=0.221 Sum_probs=190.6
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCeeE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i 171 (523)
.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.+. |+++|+|++++ ..+++.+++.+. ..|++++
T Consensus 24 ~m~aiIlAaG--~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~~~~~~~~~-~~~~~~i 99 (269)
T 4ecm_A 24 AMKGIILAGG--TGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQC-DITDIMIITGKEHMGDVVSFLGSG-QEFGVSF 99 (269)
T ss_dssp CEEEEEECCS--CCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTS-GGGTCEE
T ss_pred CcEEEEECCC--CccccccccCCCCceecEECCEEHHHHHHHHHHHC-CCCEEEEECChhhHHHHHHHHhhc-cccCceE
Confidence 5899999999 99999999999999999999999999999999996 99999999987 457888888762 4578888
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c--chHH--HHHHHHhcCCcceEEEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I--RSDV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i--~~D~--l~~~h~~~~~~~~~tv~~ 243 (523)
.++.++++.| ++++++ .+++. .++ |+|++ . ..|+ +++.|++.+ +++++++
T Consensus 100 ~~~~~~~~~G-----------------~~~al~~a~~~~~--~~~-~lv~~~D~~~~~~l~~l~~~~~~~~--~~~~~~~ 157 (269)
T 4ecm_A 100 TYRVQDKAGG-----------------IAQALGLCEDFVG--NDR-MVVILGDNIFSDDIRPYVEEFTNQK--EGAKVLL 157 (269)
T ss_dssp EEEECSSCCC-----------------HHHHHHTTHHHHT--TSE-EEEEETTEEESSCSHHHHHHHHTSS--SSEEEEE
T ss_pred EEeeCCccCc-----------------HHHHHHHHHHhcC--CCc-EEEEeCCccCccCHHHHHHHHHhcC--CCeEEEE
Confidence 8887777777 999999 66665 356 88887 2 2334 788888877 8888888
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccc
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNH 323 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 323 (523)
.++. ++..||.+..| + ++|..|.|||..+.+.++++|+|+|++++|+.+.+.....++||++
T Consensus 158 ~~~~--~~~~~g~v~~d-~-g~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~ge~~l-------------- 219 (269)
T 4ecm_A 158 QSVD--DPERFGVANIQ-N-RKIIEIEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEI-------------- 219 (269)
T ss_dssp EECS--CGGGSEEEEEE-T-TEEEEEEESCSSCSCSEEEEEEEEECTTHHHHHTSCCBCTTSCBCH--------------
T ss_pred EECC--CCCCceEEEEc-C-CEEEEEEECCCCCCCcEEEEEEEEECHHHHHhhhhcCCCCCCeeeH--------------
Confidence 8774 56789999888 3 8999999999877889999999999999998776543333445544
Q ss_pred ccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 324 IQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 324 ~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
+++++.+++.+++.++..+++|.|++|+++|..++..+++
T Consensus 220 ----~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~~ 259 (269)
T 4ecm_A 220 ----TDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALARD 259 (269)
T ss_dssp ----HHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTTT
T ss_pred ----HHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHHh
Confidence 7999999988999999999999999999999999987764
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=252.71 Aligned_cols=240 Identities=13% Similarity=0.146 Sum_probs=183.1
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCccccee--CCcchHHHHHHHHhcCCCccEEEEEccCC-hHHHHHHHHhhhhcc
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPV--AGLPMIQHHIEACVQVPNLKEIIILGYYP-SADLQKFVLDMVQEY 167 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i--~g~pli~~~l~~~~~~~g~~~i~vv~~~~-~~~i~~~l~~~~~~~ 167 (523)
||.|++|||||| +|+||+| ||+|+|+ +|+|||+|+|+++.+. |+++|+|++++. .+.+++|+.+. ..+
T Consensus 3 ~m~~~~vIlAaG--~g~R~~~-----~K~l~~ig~~g~pli~~~l~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~-~~~ 73 (303)
T 3pnn_A 3 AMKPTLFVLAAG--MGSRYGS-----LKQLDGIGPGGDTIMDYSVYDAIRA-GFGRLVFVIRHSFEKEFREKILTK-YEG 73 (303)
T ss_dssp CCCCEEEEECTT--CBCTTSS-----BCCCCCCSTTSCCHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHHTHHH-HTT
T ss_pred CCceEEEEECCC--CcccCCC-----CceEeEcCCCCeeHHHHHHHHHHHC-CCCeEEEEcCchHHHHHHHHHHHH-hcc
Confidence 578899999999 9999999 8999999 5999999999999985 999999999997 58999999874 345
Q ss_pred CeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hH-H--HHHHHHh---cCC
Q psy17795 168 KINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SD-V--VILMHSL---YSM 235 (523)
Q Consensus 168 ~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D-~--l~~~h~~---~~~ 235 (523)
+.++.++.++...-+....+........| |++|++ ++++. ++ |+|++ .+ .| + ++++|.+ .+
T Consensus 74 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~G--t~~al~~a~~~i~---~~-~lV~~gD~l~~~~~~~~l~~~~~~~~~~~- 146 (303)
T 3pnn_A 74 RIPVELVFQELDRLPEGFSCPEGREKPWG--TNHAVLMGRDAIR---EP-FAVINADDFYGRNGFEVLARKLMTLEGKQ- 146 (303)
T ss_dssp TSCEEEEECCTTCCCTTCCCCTTCCSCCC--HHHHHHTTTTTCC---SC-EEEEESSCBCCHHHHHHHHHHHHTTTTCS-
T ss_pred CCcEEEEecccccccccccccccccccCC--cHHHHHHHHHhcC---CC-EEEEECCeecCHHHHHHHHHHHHHhcccc-
Confidence 67788877651000000000000001223 999999 77773 56 88888 32 34 4 8888876 44
Q ss_pred cceEEEEEEeeCCCCC-cce-----eEEEEcCCCCcEEEEeecCCC-------------------cccceeeeeEEEeeH
Q psy17795 236 AILVTVMATEATRQQS-VYY-----GCIVRKQQTSEISHYVEKPST-------------------FVSTLVNCGVYLFSL 290 (523)
Q Consensus 236 ~~~~tv~~~~~~~~~~-~~~-----g~v~~d~~~~~V~~~~ekp~~-------------------~~~~l~~~Giyif~~ 290 (523)
+++++++.++. ++ +.| |.+..|++ |+|++|.|||.. ..++++++|+|+|++
T Consensus 147 -~~~~v~~~~~~--~~~~~~g~~~~G~v~~d~~-g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~ 222 (303)
T 3pnn_A 147 -GEYCMVGYRVG--NTLSESGGVSRGVCQVDEK-HLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTP 222 (303)
T ss_dssp -SEEEEEEEEGG--GSCBTTBCEEEEEEEECTT-SBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECT
T ss_pred -CceEEEEEECC--CccCccCceeeeeEeeCCC-CcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECH
Confidence 78899988874 33 455 68888876 999999999853 257899999999999
Q ss_pred HHHHHHHHhh--------cccccccccccccccCCCCCcccccchhhhhhhhhcCC--cEEEEEcchhHhhhccchhhhh
Q psy17795 291 DIFQNIAAVF--------QSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSG--KAYVYQTSKWWSQLKSAGSAIY 360 (523)
Q Consensus 291 ~il~~l~~~~--------~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g--~v~~~~~~g~w~dIgt~~dyl~ 360 (523)
++|+.|.+.+ .+.++||++ +|+++.+++.| ++.++..+++|.+++++++|.+
T Consensus 223 ~~~~~l~~~~~~~l~~~~~~~~~e~~l------------------~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~ 284 (303)
T 3pnn_A 223 DYFDYSEELFINFLNAHGQEPKSEFFI------------------PFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPG 284 (303)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCCCH------------------HHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCcEEh------------------HHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHH
Confidence 9999887532 122456654 79999999888 5999999999999999999999
Q ss_pred ccHHHHhh
Q psy17795 361 ANRHYLQL 368 (523)
Q Consensus 361 an~~~l~~ 368 (523)
++..+.+.
T Consensus 285 a~~~l~~~ 292 (303)
T 3pnn_A 285 VVAKLREL 292 (303)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=252.28 Aligned_cols=227 Identities=18% Similarity=0.199 Sum_probs=180.8
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh-------
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ------- 165 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~------- 165 (523)
.|++|||||| .|+||+|+|..+||+|+|++|+|||+|+++++.++ |+++|+|++++..+++.+|+.....
T Consensus 8 ~~~avIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~ 84 (302)
T 2e3d_A 8 VKKAVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_dssp CCEEEEECCS--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECGGGHHHHHHHSCCHHHHHHHC-
T ss_pred ccEEEEECCc--CcccCCccccCCCceeeEECCeEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHhcchhhhhhhhh
Confidence 4789999999 99999999999999999999999999999999986 9999999999988899999864110
Q ss_pred --------------ccCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cch---
Q psy17795 166 --------------EYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IRS--- 223 (523)
Q Consensus 166 --------------~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~~--- 223 (523)
.++.++.++.+.+++| |+++++ ++++. +++ |+|++ .+.
T Consensus 85 ~~~~~~l~~~~~~~~~~~~i~~~~~~~~~G-----------------t~~al~~a~~~~~--~~~-~lv~~~D~~~~~~~ 144 (302)
T 2e3d_A 85 RVKRQLLDEVQSICPPHVTIMQVRQGLAKG-----------------LGHAVLCAHPVVG--DEP-VAVILPDVILDEYE 144 (302)
T ss_dssp ---CHHHHHHHHTSCTTCEEEEEECSSCCC-----------------HHHHHHHTHHHHC--SSC-EEEECTTEEECTTS
T ss_pred ccchhhhhhhhhccccCcceEEeeCCccCC-----------------HHHHHHHHHHHcC--CCc-EEEEcCCccccCcc
Confidence 1356777777777777 999999 66765 356 88888 322
Q ss_pred ------HH--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEc----CCCC---cEEEEeecCC--CcccceeeeeEE
Q psy17795 224 ------DV--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRK----QQTS---EISHYVEKPS--TFVSTLVNCGVY 286 (523)
Q Consensus 224 ------D~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d----~~~~---~V~~~~ekp~--~~~~~l~~~Giy 286 (523)
++ +++.|++.+ + +++++.+. +++..||++..+ ++ | +|..|.|||. ...++++++|+|
T Consensus 145 ~~~~~~~l~~l~~~~~~~~--~-~~i~~~~~--~~~~~yg~v~~~~~~~~~-g~~~~v~~~~ekp~~~~~~~~~~~~Giy 218 (302)
T 2e3d_A 145 SDLSQDNLAEMIRRFDETG--H-SQIMVEPV--ADVTAYGVVDCKGVELAP-GESVPMVGVVEKPKADVAPSNLAIVGRY 218 (302)
T ss_dssp SCTTTSTHHHHHHHHHHHC--C-EEEEEEEC--SCGGGSEEEECTTCCCCT-TCEEEECEEEESCCTTTCSCSEEEEEEE
T ss_pred ccchHHHHHHHHHHHHhcC--C-cEEEEEEc--cCCCCccEEEecccccCC-CCceeEEEEEECCCCCccccceEEEEEE
Confidence 56 888888766 5 67777665 456789988763 33 6 8999999985 345789999999
Q ss_pred EeeHHHHHHHHHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 287 LFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 287 if~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
+|++++|+.+.+......++|++ +++++.+++.+++.++..+++|.|++|+++|++++..++
T Consensus 219 i~~~~~l~~l~~~~~~~~~~~~l------------------~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~ 280 (302)
T 2e3d_A 219 VLSADIWPLLAKTPPGAGDEIQL------------------TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_dssp EECTTHHHHHTCCCC----CCCH------------------HHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHH
T ss_pred EECHHHHHHHHhhCCCCCCceeh------------------HHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHH
Confidence 99999888775533222234443 688888887789999999999999999999999996665
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-29 Score=248.92 Aligned_cols=228 Identities=17% Similarity=0.204 Sum_probs=183.2
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEc-cCChHHHHHHHHhhhhccCee
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILG-YYPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~-~~~~~~i~~~l~~~~~~~~~~ 170 (523)
|.|++|||||| .||||+|+|...||+|+|++|+|||+|+++.+..+ |+++|+|++ .++.+.+++++.+. +.|+++
T Consensus 1 M~~~aIILAgG--~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~-gi~~I~vv~~~~~~~~i~~~l~~g-~~~g~~ 76 (293)
T 1fxo_A 1 MKRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPQDTPRFQQLLGDG-SNWGLD 76 (293)
T ss_dssp -CEEEEEECCC--CCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTS-GGGTCE
T ss_pred CCceEEEECCC--CCCcCccccCCCCceeCeECCEeHHHHHHHHHHHC-CCCEEEEEeccccHHHHHHHHhcc-cccCce
Confidence 46889999999 99999999999999999999999999999999986 899998877 55778899998873 457888
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc--hHH--HHHHHHhcCCcceEEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR--SDV--VILMHSLYSMAILVTV 241 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~--~D~--l~~~h~~~~~~~~~tv 241 (523)
+.++.++++.| ++++++ .+++. .++ +++++ .+ .++ +++.|.+.+ ..+++
T Consensus 77 i~~~~~~~~~G-----------------~~~al~~a~~~i~--~~~-~~lv~gD~~~~~~~l~~~l~~~~~~~--~~~~v 134 (293)
T 1fxo_A 77 LQYAVQPSPDG-----------------LAQAFLIGESFIG--NDL-SALVLGDNLYYGHDFHELLGSASQRQ--TGASV 134 (293)
T ss_dssp EEEEECSSCCC-----------------GGGHHHHTHHHHT--TSE-EEEEETTEEEECTTHHHHHHHHHTCC--SSEEE
T ss_pred EEEeeCCCCCC-----------------HHHHHHHHHHHhC--CCC-EEEEECChhccCccHHHHHHHHHhcC--CCcEE
Confidence 88887777777 999998 66775 245 66555 22 345 777787665 66777
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCc
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDF 321 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~ 321 (523)
++.++. ++.+||++..|++ ++|.+|.|||..+.++++++|+|+|++++++.+.+.....++|+++
T Consensus 135 ~~~~v~--dp~~~g~v~~d~~-g~v~~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~------------ 199 (293)
T 1fxo_A 135 FAYHVL--DPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEI------------ 199 (293)
T ss_dssp EEEECS--CGGGSEEEEECTT-SCEEEEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCH------------
T ss_pred EEEECC--CcccCcEEEECCC-CcEEEEEECCCCCCCCeEEEEEEEEcHHHHHHHHhcCcccCCceeH------------
Confidence 777764 5778999999986 9999999999877788999999999999988776643322334332
Q ss_pred ccccchhhhhhhhhcCCcEEEEEcc-hh-HhhhccchhhhhccHHHH
Q psy17795 322 NHIQLEKEIIMPLAGSGKAYVYQTS-KW-WSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 322 ~~~~~~~dil~~li~~g~v~~~~~~-g~-w~dIgt~~dyl~an~~~l 366 (523)
+|+++.+++.|.+.++... ++ |.|++|++||.+++..+.
T Consensus 200 ------td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 200 ------TDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp ------HHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 6888888888888777764 75 999999999999987664
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=245.26 Aligned_cols=227 Identities=14% Similarity=0.151 Sum_probs=182.0
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEcc-CChHHHHHHHHhhhhccCeeE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY-YPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i 171 (523)
.|++|||||| .||||+|+|...||+|+|++|+|||+|+++.+... |+++|+|+++ ++.+.+++++.+. +.|++++
T Consensus 3 ~m~aIILAgG--~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~-gi~~Iivv~~~~~~~~i~~~l~~g-~~~g~~i 78 (295)
T 1lvw_A 3 HMKGIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLA-GIRDILIISTPRDLPLYRDLLGDG-SQFGVRF 78 (295)
T ss_dssp SCEEEEECCC--CCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTS-GGGTSEE
T ss_pred ceEEEEECCC--CCCccccccCCCCceecEECCeeHHHHHHHHHHHC-CCCeEEEEeccchHHHHHHHhhhc-cccCceE
Confidence 3789999999 99999999999999999999999999999999986 8999998875 6778899998763 4578888
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc--hHH--HHHHHHhcCCcceEEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR--SDV--VILMHSLYSMAILVTVM 242 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~--~D~--l~~~h~~~~~~~~~tv~ 242 (523)
.++.++++.| ++++++ .+++. +++ +++++ .+ .++ +++.|.+.+ ..++++
T Consensus 79 ~~~~~~~~~G-----------------~~~al~~a~~~i~--~~~-~~lv~gD~~~~~~~l~~~l~~~~~~~--~~~~v~ 136 (295)
T 1lvw_A 79 SYRVQEEPRG-----------------IADAFIVGKDFIG--DSK-VALVLGDNVFYGHRFSEILRRAASLE--DGAVIF 136 (295)
T ss_dssp EEEECSSCCC-----------------GGGHHHHTHHHHT--TSC-EEEEETTCCEECTTHHHHHHHHHTCC--SSEEEE
T ss_pred EEeeCCCCCC-----------------hHHHHHHHHHHhC--CCc-EEEEECCccccCcCHHHHHHHHHHcC--CCcEEE
Confidence 8887777777 999998 66775 245 55554 22 345 777777665 667777
Q ss_pred EEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcc
Q psy17795 243 ATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFN 322 (523)
Q Consensus 243 ~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 322 (523)
+.++. +|.+||++..|++ ++|.+|.|||..+.++++++|+|+|++++++.+.+.....++|+++
T Consensus 137 ~~~v~--dp~~~g~v~~d~~-g~v~~~~ekp~~~~s~~~~~Giy~f~~~~l~~~~~~~~~~~ge~~~------------- 200 (295)
T 1lvw_A 137 GYYVR--DPRPFGVVEFDSE-GRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEI------------- 200 (295)
T ss_dssp EEECS--CCTTSEEEEECTT-SBEEEEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCH-------------
T ss_pred EEECC--CcccCCEEEECCC-CcEEEEEECCCCCCCCEEEEEeEEEcHHHHHHHHhcCCcccCceeH-------------
Confidence 77764 4668999999986 9999999999877788999999999999988776643322334432
Q ss_pred cccchhhhhhhhhcCCcEEEEEcc-hh-HhhhccchhhhhccHHHH
Q psy17795 323 HIQLEKEIIMPLAGSGKAYVYQTS-KW-WSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 323 ~~~~~~dil~~li~~g~v~~~~~~-g~-w~dIgt~~dyl~an~~~l 366 (523)
+|+++.+.+.+.+.++... ++ |.|++|++||.+++..+.
T Consensus 201 -----td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 201 -----TSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp -----HHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 6888888888887776664 75 999999999999987664
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=252.53 Aligned_cols=232 Identities=19% Similarity=0.185 Sum_probs=163.1
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh------
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ------ 165 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~------ 165 (523)
+.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.++ |+++|+|++++..+++.+++.+...
T Consensus 13 ~~~~avIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~ 89 (297)
T 2ux8_A 13 PLRKAVFPVAG--LGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEA-GIEQMIFVTGRGKSALEDHFDIAYELEATMA 89 (297)
T ss_dssp CCCEEEEEECC--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHTSCCHHHHHHHH
T ss_pred CccEEEEECCC--CccccCccccCCCceeeeECCeEHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHhhhhhhhhhhh
Confidence 35789999999 99999999999999999999999999999999986 9999999999988899998764200
Q ss_pred -------------ccCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc----h
Q psy17795 166 -------------EYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR----S 223 (523)
Q Consensus 166 -------------~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~----~ 223 (523)
.++.++.++.+++++| |+++++ ++++. +++ |+|++ .+ .
T Consensus 90 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~G-----------------t~~al~~a~~~~~--~~~-~lv~~~D~~~~~~~~ 149 (297)
T 2ux8_A 90 ARGKSLDVLDGTRLKPGNIAYVRQQEPMG-----------------LGHAVWCARDIVG--DEP-FAVLLPDDFMFGQPG 149 (297)
T ss_dssp TTTCCGGGGTTSCCSTTSEEEEECCSCCC-----------------HHHHHHTTHHHHC--SSC-EEEECTTEEEESSSC
T ss_pred hccchhhhhhhcccCCCceEEEeCCCCCC-----------------hHHHHHHHHHHcC--CCc-EEEEeCCeecCCChH
Confidence 0345677777766677 999999 66765 356 88888 32 2
Q ss_pred HH--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcC-CCC--cEEEEeecCC--CcccceeeeeEEEeeHHHHHHH
Q psy17795 224 DV--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQ-QTS--EISHYVEKPS--TFVSTLVNCGVYLFSLDIFQNI 296 (523)
Q Consensus 224 D~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~-~~~--~V~~~~ekp~--~~~~~l~~~Giyif~~~il~~l 296 (523)
++ +++.|++.+ + .++++.+++.+++..||++..|+ +++ +|..|.|||. ...++++++|+|+|++++|+.+
T Consensus 150 ~l~~l~~~~~~~~--~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l 226 (297)
T 2ux8_A 150 CLKQMVDAYNKVG--G-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRIL 226 (297)
T ss_dssp HHHHHHHHHHHHC--S-EEEEEC-----------CCCCCCBCSSEEEC--------------CCCEEEEEEECTHHHHHH
T ss_pred HHHHHHHHHHhcC--C-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCCCccEEEEEEEEECHHHHHHH
Confidence 45 788887765 5 46666555434567899887653 225 8999999985 3456789999999999999888
Q ss_pred HHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 297 AAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 297 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
.+......+++++ +++++.+++.++++++..+++|.|++|+++|.+++..++.
T Consensus 227 ~~~~~~~~~~~~l------------------~d~i~~l~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~ 279 (297)
T 2ux8_A 227 ENQGKGAGGEIQL------------------TDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVAL 279 (297)
T ss_dssp HHTC--------C------------------CTTGGGGTTTSCEEEEECSSEEEETTSHHHHHHHHHHHHH
T ss_pred HhhCCCCCCeeEH------------------HHHHHHHHhcCCEEEEEecceEEeCCCHHHHHHHHHHHHh
Confidence 7644322334543 5788888888899999999999999999999999977764
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=249.23 Aligned_cols=232 Identities=17% Similarity=0.160 Sum_probs=181.8
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh------
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ------ 165 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~------ 165 (523)
+.|++|||||| .|+||+|+|...||+|+||+|+|||+|+++++.+. |+++|+|++++..+.+.+++.....
T Consensus 11 ~~~~aVIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~ 87 (323)
T 2pa4_A 11 AVKTVVVPAAG--LGTRFLPATKTVPKELLPVVDTPGIELIAAEAAEL-GATRLAIITAPNKAGVLAHFERSSELEETLM 87 (323)
T ss_dssp -CCEEEEECCC--CCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHTTSCCHHHHHHHH
T ss_pred cceEEEEECCC--CccccCccccCCCceeeeECCEEHHHHHHHHHHhC-CCCEEEEEecCcHHHHHHHHhccchhhhhhh
Confidence 34789999999 99999999999999999999999999999999986 9999999999987889888753100
Q ss_pred --------------ccCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc---h
Q psy17795 166 --------------EYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR---S 223 (523)
Q Consensus 166 --------------~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~---~ 223 (523)
.++.++.++.+++++| |+++++ .+++...++. |+|++ .+ .
T Consensus 88 ~~~~~~~~~~~~~~~~g~~i~~~~~~~~~G-----------------t~~al~~a~~~l~~~~d~-~lv~~~D~~~~~~~ 149 (323)
T 2pa4_A 88 ERGKTDQVEIIRRAADLIKAVPVTQDKPLG-----------------LGHAVGLAESVLDDDEDV-VAVMLPDDLVLPTG 149 (323)
T ss_dssp HTTCHHHHHHTTHHHHHCEEEEEECSSCCC-----------------HHHHHHTTGGGSCSSCCE-EEEECTTEEEESSC
T ss_pred ccchhhhhhhhhccccCcceEEEeCCccCC-----------------cHHHHHHHHHHhcCCCCe-EEEEeCCcccCchH
Confidence 0345677777766677 999999 6677533455 78877 32 2
Q ss_pred HH--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEc----CCCC--cEEEEeecCC--CcccceeeeeEEEeeHHHH
Q psy17795 224 DV--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRK----QQTS--EISHYVEKPS--TFVSTLVNCGVYLFSLDIF 293 (523)
Q Consensus 224 D~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d----~~~~--~V~~~~ekp~--~~~~~l~~~Giyif~~~il 293 (523)
++ ++++|++.+ + .++++.+++.+++..||.+..| ++ + +|..|.|||. ...++++++|+|+|++++|
T Consensus 150 ~l~~l~~~~~~~~--~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~-~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~ 225 (323)
T 2pa4_A 150 VMERMAQVRAEFG--G-SVLCAVEVSEADVSKYGIFEIEADTKDS-DVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIF 225 (323)
T ss_dssp HHHHHHHHHHTTC--S-EEEEEEECCGGGGGGSEEEEEEECCSST-TEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHH
T ss_pred HHHHHHHHHHhcC--C-cEEEEEEecccccCCccEEEeCCcccCC-CceeEEEEEECCCCccccccEEEEEEEEECHHHH
Confidence 34 778887765 5 4666666644456789998877 43 4 8999999984 4456799999999999999
Q ss_pred HHHHHhhcccccccccccccccCCCCCcccccchhhhhhhhhcC-CcEEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 294 QNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGS-GKAYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 294 ~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~-g~v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
+.+.+......++|++ +++++.+++. .++.++..+++|.||+|+++|..++..++
T Consensus 226 ~~l~~~~~~~~ge~~l------------------~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~ 281 (323)
T 2pa4_A 226 DALRRITPGAGGELQL------------------TDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFG 281 (323)
T ss_dssp HHHHHCCCCGGGCCCH------------------HHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCeEeH------------------HHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHh
Confidence 8887643322334443 6899998887 46999999999999999999999997765
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-29 Score=247.45 Aligned_cols=226 Identities=18% Similarity=0.198 Sum_probs=181.3
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEcc-CChHHHHHHHHhhhhccCeeEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY-YPSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~ 172 (523)
|++|||||| .||||+|+|...||+|+|++|+|||+|+++.+... |+++|+|+++ ++.+.+++++.+. +.|++++.
T Consensus 4 m~aIILAgG--~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~-gi~~I~vv~~~~~~~~i~~~l~~g-~~~g~~i~ 79 (296)
T 1mc3_A 4 MKGIILAGG--SGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA-GIREILIITTPEDKGYFQRLLGDG-SEFGIQLE 79 (296)
T ss_dssp CEEEEECCC--CCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTS-GGGTCEEE
T ss_pred cEEEEECCC--CCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhC-CCCcEEEEechhHHHHHHHHHhcc-cccCceEE
Confidence 689999999 99999999999999999999999999999999986 9999999875 6778899998763 45788888
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc--hHH--HHHHHHhcCCcceEEEEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR--SDV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~--~D~--l~~~h~~~~~~~~~tv~~ 243 (523)
++.++++.| ++++++ .+++. +++ +++++ .+ .++ +++.|.+.+ ..+++++
T Consensus 80 ~~~~~~~~G-----------------~~~al~~a~~~i~--~~~-~~lv~gD~~~~~~~l~~~l~~~~~~~--~~~~v~~ 137 (296)
T 1mc3_A 80 YAEQPSPDG-----------------LAQAFIIGETFLN--GEP-SCLVLGDNIFFGQGFSPKLRHVAART--EGATVFG 137 (296)
T ss_dssp EEECSSCCC-----------------STHHHHHTHHHHT--TSC-EEEEETTEEEECSSCHHHHHHHTTCC--SSEEEEE
T ss_pred EeccCCCCC-----------------HHHHHHHHHHHhC--CCC-EEEEECCccccccCHHHHHHHHHHcC--CCCEEEE
Confidence 887777777 999998 66775 245 55544 22 233 677776555 6677777
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccc
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNH 323 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 323 (523)
.++. +|..||++..|++ ++|.+|.|||..+.++++++|+|+|++++++.+.+.....++|+++
T Consensus 138 ~~v~--dp~~yg~v~~d~~-g~v~~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~-------------- 200 (296)
T 1mc3_A 138 YQVM--DPERFGVVEFDDN-FRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEI-------------- 200 (296)
T ss_dssp EECS--CCSSSBBCEEETT-EEEEECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCH--------------
T ss_pred EECC--CcccCCEEEECCC-CcEEEEEECCCCCCCCEEEEEEEEEcHHHHHHHHhcCccccCCccH--------------
Confidence 7764 5678999999876 9999999999877788999999999999988776543322344433
Q ss_pred ccchhhhhhhhhcCCcEEEEEcc-hh-HhhhccchhhhhccHHHH
Q psy17795 324 IQLEKEIIMPLAGSGKAYVYQTS-KW-WSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 324 ~~~~~dil~~li~~g~v~~~~~~-g~-w~dIgt~~dyl~an~~~l 366 (523)
+|+++.+.+.+.+.++... ++ |.|++|+++|.+++..+.
T Consensus 201 ----td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (296)
T 1mc3_A 201 ----TSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQ 241 (296)
T ss_dssp ----HHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 6888888888887777664 75 999999999999988765
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=238.45 Aligned_cols=222 Identities=17% Similarity=0.269 Sum_probs=163.2
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh-ccCee
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ-EYKIN 170 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~-~~~~~ 170 (523)
|+|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.++ |+++|+|++++..+.+++++.+... ..++.
T Consensus 1 m~~~avIlAaG--~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~ 77 (259)
T 1tzf_A 1 MASKAVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH-GIKDFIICCGYKGYVIKEYFANYFLHMSDVT 77 (259)
T ss_dssp CCCEEEEEECS--CC--------CCCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTHHHHHHHHHTHHHHHSCEE
T ss_pred CCcEEEEECCC--CcccCCCccCCCCccccEECCEEHHHHHHHHHHHC-CCCEEEEEcccCHHHHHHHHhhccccccccc
Confidence 56889999999 99999999999999999999999999999999986 8999999999988899999976311 00222
Q ss_pred E-------EEE------------ecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH
Q psy17795 171 I-------RYL------------QEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV 225 (523)
Q Consensus 171 i-------~~~------------~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~ 225 (523)
+ .+. .+..+.| |+++++ ++++.. .++ |++++ .+ .++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g-----------------t~~al~~a~~~~~~-~~~-~lv~~~D~~~~~~~ 138 (259)
T 1tzf_A 78 FHMAENRMEVHHKRVEPWNVTLVDTGDSSM-----------------TGGRLKRVAEYVKD-DEA-FLFTYGDGVADLDI 138 (259)
T ss_dssp EEGGGTEEEETTCCCCCCEEEEEECCSSCC-----------------HHHHHHHTGGGTTT-SSC-EEEEETTEEECCCH
T ss_pred ccccccceeeeeccccccceeeeecccccC-----------------cHHHHHHHHHhcCC-CCc-EEEEECCEecccCH
Confidence 1 111 1122333 999998 677742 356 88877 22 344
Q ss_pred --HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhccc
Q psy17795 226 --VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSK 303 (523)
Q Consensus 226 --l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~ 303 (523)
++++|++.+ +.+++...+ .+..||.+..| + |+|..|.|||... .+++++|+|+|++++|+.+.+ .
T Consensus 139 ~~~~~~~~~~~--~~~t~~~~~----~~~~~g~v~~~-~-g~v~~~~ekp~~~-~~~~~~Giy~~~~~~l~~l~~----~ 205 (259)
T 1tzf_A 139 KATIDFHKAHG--KKATLTATF----PPGRFGALDIQ-A-GQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDN----D 205 (259)
T ss_dssp HHHHHHHHHHC--CSEEEEEEC----CCCCSEEEEEE-T-TEEEEEEESCSCC-SCCEECCCEEECGGGGGGCCS----T
T ss_pred HHHHHHHHHhC--CeEEEEEec----CCCCccEEEEc-C-CEEEEEEecCCCC-CceEEEEEEEeCHHHHHhhcc----c
Confidence 788887766 667765432 35689999888 5 8999999998653 568999999999998754311 1
Q ss_pred ccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 304 QDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 304 ~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
..+++.++++.++++++++++..+++|.|++|++||..++..++.
T Consensus 206 -------------------~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~ 250 (259)
T 1tzf_A 206 -------------------ATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEK 250 (259)
T ss_dssp -------------------TCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHT
T ss_pred -------------------ccccHHHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHhc
Confidence 123446888888888899999999999999999999999988775
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=240.24 Aligned_cols=219 Identities=11% Similarity=0.030 Sum_probs=165.8
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCee--EEE
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKIN--IRY 173 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~--i~~ 173 (523)
+|||||| +||||+|+|..+||||+||+|+|||+|+|+++.+.+|+++|+||+++..+ +.+++.+..+.++.+ ..+
T Consensus 2 ~iIlAaG--~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (255)
T 4evw_A 2 IVIPMAG--MSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKATQLGIKQFYIA 78 (255)
T ss_dssp EEEECCS--CCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHHHHTCSSEEEE
T ss_pred EEEEcCC--CCcccccCCCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHHHcCCCCceEE
Confidence 7999999 99999999999999999999999999999999982399999999998664 666665532333321 234
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--Hhhcc----cCCcceEEEEc--cch-HH-HHHHHHhcCCcceEEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH----WVQEAVYFTLE--IRS-DV-VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~----~~~d~~~Lvl~--i~~-D~-l~~~h~~~~~~~~~tv~~ 243 (523)
+.+++++| |++|++ ++++. +.+++ |+|++ .++ +. +.++ ..+ ++.++++
T Consensus 79 ~~~~~~~G-----------------t~~av~~a~~~l~~~~~~~~~~-~lV~~gD~l~~~~~~~~~--~~~--~~~~i~~ 136 (255)
T 4evw_A 79 ELHTETRG-----------------QAETVTLGLEELAKQGVDYQGS-ITVFNIDTFRPNFVFPDI--SQH--SDGYLEV 136 (255)
T ss_dssp EESSCCSS-----------------HHHHHHHHHHHHHHTTCCCCSC-EEECCTTEECTTCCCCGG--GGS--SSEEEEE
T ss_pred EeCCCCCC-----------------HHHHHHHHHHHHhhcccCCCCc-EEEEeCCEEEecchhHHH--hhc--CCcEEEE
Confidence 55667777 999999 77772 22456 89987 222 33 2222 234 6778888
Q ss_pred EeeCCCCCcceeEEEEcCCCC--cEEEEeecCCCcccceeeeeEEEeeHH--HHHHHHHhhccc-----ccccccccccc
Q psy17795 244 TEATRQQSVYYGCIVRKQQTS--EISHYVEKPSTFVSTLVNCGVYLFSLD--IFQNIAAVFQSK-----QDEFYNGNYMV 314 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~--~V~~~~ekp~~~~~~l~~~Giyif~~~--il~~l~~~~~~~-----~~e~~~~~~~~ 314 (523)
.+++ ++ .||++..|++ | +|.+|.||+ ..++++++|+|+|++. +++.+.+..... ++|||+
T Consensus 137 ~~~~--~p-~yG~v~~d~~-g~~~V~~i~EK~--~~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~l----- 205 (255)
T 4evw_A 137 FQGG--GD-NWSFAKPEHA-GSTKVIQTAEKN--PISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYI----- 205 (255)
T ss_dssp EECC--SS-CSCEEEESST-TCCBEEEEESSS--CSSSEEEEEEEEESCHHHHHHHHHHHHTSCGGGCSCSCCCS-----
T ss_pred EecC--CC-ceeEEEECCC-CCeEEEEEEecc--CccCcEEEeEEEECcHHHHHHHHHHHHhcccccccCCeEeh-----
Confidence 8875 34 8999999876 7 999999993 4578999999999985 334454432211 467776
Q ss_pred cCCCCCcccccchhhhhhhhhcCCc-EEEEEcc-hhHhhhccchhhhhccH
Q psy17795 315 NGKDTDFNHIQLEKEIIMPLAGSGK-AYVYQTS-KWWSQLKSAGSAIYANR 363 (523)
Q Consensus 315 ~~~~~~~~~~~~~~dil~~li~~g~-v~~~~~~-g~w~dIgt~~dyl~an~ 363 (523)
+|+++.+++.|. +.++..+ ++|.|+|++++|.++..
T Consensus 206 -------------td~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~ 243 (255)
T 4evw_A 206 -------------APLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLR 243 (255)
T ss_dssp -------------TTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHH
T ss_pred -------------HHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHh
Confidence 699999998875 8899885 99999999999887744
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=223.82 Aligned_cols=241 Identities=14% Similarity=0.148 Sum_probs=145.5
Q ss_pred cceeEEEEecCCCCCCcCCCCCC-CCCccccee-CCcchHHHHHHHHhcCCCccEEEEEccCC-hHHHHHHHHhhhhccC
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSL-DSPKPLFPV-AGLPMIQHHIEACVQVPNLKEIIILGYYP-SADLQKFVLDMVQEYK 168 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~-~~pK~ll~i-~g~pli~~~l~~~~~~~g~~~i~vv~~~~-~~~i~~~l~~~~~~~~ 168 (523)
|.|++|||||| .|+||+|+|. ..||||+|+ +|+|||+|+++++.+. +++|+|++++. .+.+.+++.+. |+
T Consensus 3 ~~~~avIlAgG--~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~--~~~i~vv~~~~~~~~i~~~~~~~---~~ 75 (308)
T 2qh5_A 3 LKIKNILLSGG--SGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL--VDETLIVCNEKHYFLALEEIKNE---IK 75 (308)
T ss_dssp CCEEEEEECC---------------CCGGGCTTBTTBCHHHHHHHHHHTT--CSEEEEEEEGGGHHHHHHHTTTT---CS
T ss_pred CccEEEEEcCC--CCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc--CCCEEEEEChhHHHHHHHHHHHh---hC
Confidence 56889999999 9999999997 899999999 6999999999999984 89999999885 46778887651 56
Q ss_pred e-eEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc--hH-H--HHHH---HHhcC
Q psy17795 169 I-NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR--SD-V--VILM---HSLYS 234 (523)
Q Consensus 169 ~-~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~--~D-~--l~~~---h~~~~ 234 (523)
+ ++.++.++.++| |+++++ .+++. .++. |++++ ++ .| + +++. |.+.+
T Consensus 76 ~~~~~~i~~~~~~g-----------------t~~al~~a~~~l~-~~~~-~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~ 136 (308)
T 2qh5_A 76 NKSVGFLLESLSKN-----------------TANAIALSALMSD-KEDL-LIVTPSDHLIKDLQAYENAIKKAIDLAQKG 136 (308)
T ss_dssp SCEEEEEEESSCCC-----------------HHHHHHHHHHTSC-TTSE-EEEEESSCBCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCccEEEeCCCCCC-----------------hHHHHHHHHHHhC-CCCe-EEEEcCCccccCHHHHHHHHHHHHHHHhcC
Confidence 5 666777777777 999998 66664 2345 77877 32 34 4 6665 66666
Q ss_pred CcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc--------ccceeeeeEEEeeHHHH-HHHHHhhccccc
Q psy17795 235 MAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF--------VSTLVNCGVYLFSLDIF-QNIAAVFQSKQD 305 (523)
Q Consensus 235 ~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~--------~~~l~~~Giyif~~~il-~~l~~~~~~~~~ 305 (523)
+.+|+.+.+.. .+..||++..|++ ++|..|.|||... .+.++++|+|+|++++| +.+.+..+....
T Consensus 137 --~~~t~~~~~~~--~~~~~g~i~~d~~-~~V~~~~Ekp~~~~~~~~~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~ 211 (308)
T 2qh5_A 137 --FLVTFGVSIDK--PNTEFGYIESPNG-LDVKRFIEKPSLDKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILK 211 (308)
T ss_dssp --CEEEEEEECSS--CCTTSEEEECSSS-SBCSEEEESCCHHHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHCHHHHH
T ss_pred --CEEEEEEecCC--CCCCceEEEECCC-CEEEEEEECCChHHHHHHhhcCCeEEEeEEEEEEHHHHHHHHHHhChHHHH
Confidence 77888877653 4568999988765 8999999998642 15799999999999864 555543221100
Q ss_pred cccccccc-ccCC-CCCcccccchhhhhh--------h-hhcCC-cEEEEEcchhHhhhccchhhhhccHH
Q psy17795 306 EFYNGNYM-VNGK-DTDFNHIQLEKEIIM--------P-LAGSG-KAYVYQTSKWWSQLKSAGSAIYANRH 364 (523)
Q Consensus 306 e~~~~~~~-~~~~-~~~~~~~~~~~dil~--------~-li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~ 364 (523)
...- .+. +..+ -......++..++++ . +++++ +++++..+++|.|++|+++|.+++..
T Consensus 212 ~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~ 281 (308)
T 2qh5_A 212 GCER-AFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAAN 281 (308)
T ss_dssp HHHH-HGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC-------------
T ss_pred HHHH-HhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhc
Confidence 0000 000 0000 000001122234443 2 45554 69999999999999999999888763
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=198.11 Aligned_cols=218 Identities=15% Similarity=0.087 Sum_probs=163.3
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|++.+||||+| .|||| | ||+|+||+|+|||+|+++.+.++ ++++|+|+++ .+.+.+++.+ ++.++
T Consensus 1 M~~~aiIlA~G--~stRl-p-----~K~L~~i~GkPli~~~l~~l~~~-~~~~ivVv~~--~~~i~~~~~~----~g~~v 65 (252)
T 3oam_A 1 MSFTVVIPARY--QSTRL-P-----GKPLADIGGKPMIQWVYEQAMQA-GADRVIIATD--DERVEQAVQA----FGGVV 65 (252)
T ss_dssp CCEEEEEECCC--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEES--CHHHHHHHHH----TTCEE
T ss_pred CceEEEEecCc--CCCCC-C-----CcceeeECCEEHHHHHHHHHHhC-CCCeEEEECC--HHHHHHHHHH----cCCEE
Confidence 45679999999 99999 5 79999999999999999999986 8999999985 4688888875 57777
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH-Hhhcc-cCCcceEEEEc----cc--hHH--HHHHHHhcCCcceEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLH-WVQEAVYFTLE----IR--SDV--VILMHSLYSMAILVTV 241 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~-~~~d~~~Lvl~----i~--~D~--l~~~h~~~~~~~~~tv 241 (523)
.+..++++.| |+++.. ...+. ...+. |++++ ++ .++ +++.|.+.+ +++++
T Consensus 66 ~~~~~~~~~G-----------------t~~~~~~~~~l~~~~~d~-vlv~~gD~Pli~~~~i~~l~~~~~~~~--~~~~~ 125 (252)
T 3oam_A 66 CMTSPNHQSG-----------------TERLAEVVAKMAIPADHI-VVNVQGDEPLIPPAIIRQVADNLAACS--APMAT 125 (252)
T ss_dssp EECCTTCCSH-----------------HHHHHHHHHHTTCCTTSE-EEECCTTCTTCCHHHHHHHHHHHHHSS--CSEEE
T ss_pred EEcCCCCCCc-----------------HHHHHHHHHhcCcCCCCE-EEEEeCCeeecCHHHHHHHHHHHHhcC--CCEEE
Confidence 7766777778 877555 55553 12456 88877 22 233 778887766 88899
Q ss_pred EEEeeCCCCCcce-----eEEEEcCCCCcEEEEeecCCC-------------cccceeeeeEEEeeHHHHHHHHHhhccc
Q psy17795 242 MATEATRQQSVYY-----GCIVRKQQTSEISHYVEKPST-------------FVSTLVNCGVYLFSLDIFQNIAAVFQSK 303 (523)
Q Consensus 242 ~~~~~~~~~~~~~-----g~v~~d~~~~~V~~~~ekp~~-------------~~~~l~~~Giyif~~~il~~l~~~~~~~ 303 (523)
++.++. ++..| |.++.|++ |+++.|.++|.. +..++.++|+|+|++++|+.+.......
T Consensus 126 ~~~~v~--~~~~~~~p~~g~vv~d~~-g~v~~fsr~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~~~~ 202 (252)
T 3oam_A 126 LAVEIE--DEAEVFNPNAVKVITDKS-GYALYFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQ 202 (252)
T ss_dssp EEEEEC--CHHHHTCTTSCEEEECTT-SBEEEEESSCSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSCCCH
T ss_pred EeeecC--CHHHhhCCCceEEEECCC-CeEEEEeCCCCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCCCCc
Confidence 998885 45666 99999987 999999998632 2367999999999999998886643221
Q ss_pred --ccccccccccccCCCCCcccccchhhhhhhhhcCC-cEEEEEc-chhHhhhccchhhhhccHHHHhh
Q psy17795 304 --QDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQT-SKWWSQLKSAGSAIYANRHYLQL 368 (523)
Q Consensus 304 --~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g-~v~~~~~-~g~w~dIgt~~dyl~an~~~l~~ 368 (523)
+.| .+ +.+.. ++.| ++.++.. ..+|.+++|++||..++..+.++
T Consensus 203 ~e~~E------------------~l--e~lr~-l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 203 LEKIE------------------CL--EQLRV-LWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp HHHHH------------------TC--TTHHH-HHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccccc------------------hh--HHHHH-HHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 111 01 23333 3345 5888765 45789999999999998877654
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=204.28 Aligned_cols=216 Identities=16% Similarity=0.210 Sum_probs=151.3
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|.|++|||||| .|+||+|+|...||+|+|++|+|||+|+++++.+. |+++|+|++++..+++.++... |++.+
T Consensus 24 ~~~~aiIlAaG--~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~----~~~~i 96 (254)
T 1jyk_A 24 IRVKAIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK-GINDIIIIVGYLKEQFDYLKEK----YGVRL 96 (254)
T ss_dssp CCCEEEEEECS--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCCEEEEECTTGGGGTHHHHH----HCCEE
T ss_pred cCceEEEECCC--CcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHh----CCcEE
Confidence 56889999999 99999999999999999999999999999999986 8999999999877777654432 45444
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c--chHHHHHHHHhcCCcceEEEEEEe
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I--RSDVVILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i--~~D~l~~~h~~~~~~~~~tv~~~~ 245 (523)
....+....| ++++++ .+++. + ++|++ . ..|++. .+.+.+ +.+++ .
T Consensus 97 v~~~~~~~~g-----------------~~~al~~a~~~~~----~-~lv~~~D~~~~~~~~~-~~~~~~--~~~t~---~ 148 (254)
T 1jyk_A 97 VFNDKYADYN-----------------NFYSLYLVKEELA----N-SYVIDADNYLFKNMFR-NDLTRS--TYFSV---Y 148 (254)
T ss_dssp EECTTTTTSC-----------------THHHHHTTGGGCT----T-EEEEETTEEESSCCCC-SCCCSE--EEEEC---E
T ss_pred EECCCccCCC-----------------cHHHHHHHHHHCC----C-EEEEeCCcccCHHHHH-HHHhCC--ceEEE---E
Confidence 2222223445 889998 55553 4 67766 1 113211 111222 33333 2
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhc----cc-ccccccccccccCCCCC
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQ----SK-QDEFYNGNYMVNGKDTD 320 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~----~~-~~e~~~~~~~~~~~~~~ 320 (523)
..++ ...|+++ .|++ |+|..|.|+| ...++++|+|+|+++.++.|.+... .+ ..++|+
T Consensus 149 ~~~~-~~~~~v~-~d~~-g~v~~~~e~~---~~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e~~~----------- 211 (254)
T 1jyk_A 149 REDC-TNEWFLV-YGDD-YKVQDIIVDS---KAGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYW----------- 211 (254)
T ss_dssp ESSC-SSCCEEE-ECTT-CBEEEEECCC---SSEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCT-----------
T ss_pred cccC-CCCeEEE-ECCC-CeEEEEEECC---CCCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccccCH-----------
Confidence 2211 1367754 7776 8999999975 3468999999999876554433222 11 234433
Q ss_pred cccccchhhhhhhhhcCCcEEEEEcc-hhHhhhccchhhhhccHHHH
Q psy17795 321 FNHIQLEKEIIMPLAGSGKAYVYQTS-KWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 321 ~~~~~~~~dil~~li~~g~v~~~~~~-g~w~dIgt~~dyl~an~~~l 366 (523)
+++++.+.+..++.++..+ ++|.+|+|++||.++++.+.
T Consensus 212 -------~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~ 251 (254)
T 1jyk_A 212 -------DNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILK 251 (254)
T ss_dssp -------THHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC
T ss_pred -------HHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhh
Confidence 5777777766679999887 79999999999999987654
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-23 Score=209.16 Aligned_cols=229 Identities=18% Similarity=0.218 Sum_probs=160.3
Q ss_pred eeEEEEecCCCCCCcCCCCC-CCCCcccceeCC-cchHHHHHHHHhcCCCccEEEEEccCC-hHHHHHHHHhhhhccCee
Q psy17795 94 WTTNDTTPGPLKGTRFRPLS-LDSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYYP-SADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT-~~~pK~ll~i~g-~pli~~~l~~~~~~~g~~~i~vv~~~~-~~~i~~~l~~~~~~~~~~ 170 (523)
|++|||||| .||||+||| ...||||+|++| +|||+|+++++.+..++++++|++++. .+.+.+++.+. ..+ .
T Consensus 2 m~~VILAgG--~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~-~~~--~ 76 (336)
T 2x65_A 2 MKALILAGG--SGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPEL-PDE--N 76 (336)
T ss_dssp CEEEEECCC--BCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTS-CGG--G
T ss_pred eEEEEECCC--CCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhcc-ccc--e
Confidence 679999999 999999999 679999999999 999999999999855899999999885 56778877652 111 2
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cch---HH------HHHHHHhcCCc
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IRS---DV------VILMHSLYSMA 236 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~~---D~------l~~~h~~~~~~ 236 (523)
++.++.++| |++++. ..++. .++. +++++ .+. ++ ++++|++.+
T Consensus 77 --ii~e~~~~g-----------------ta~ai~~a~~~~~-~~~~-~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~-- 133 (336)
T 2x65_A 77 --IIAEPMKKN-----------------TAPACFIGTKLAD-DDEP-VLVLPADHRIPDTKKFWKTVKKALDALEKYD-- 133 (336)
T ss_dssp --EEEESSCCC-----------------HHHHHHHHHTTSC-TTCE-EEEEETTCBCCCHHHHHHHHHHHHHHHHHHC--
T ss_pred --EEeCCCCCC-----------------cHHHHHHHHHhhC-CCCE-EEEEcCCceeccHHHHHHHHHHHHHHHHhcC--
Confidence 345555666 999998 44443 2345 78887 222 33 445566655
Q ss_pred ceEEEEEEeeCCCCCcceeEEEEcCC----CCcEEEEeecCCCc--------ccceeeeeEEEeeHHHH-HHHHHhhccc
Q psy17795 237 ILVTVMATEATRQQSVYYGCIVRKQQ----TSEISHYVEKPSTF--------VSTLVNCGVYLFSLDIF-QNIAAVFQSK 303 (523)
Q Consensus 237 ~~~tv~~~~~~~~~~~~~g~v~~d~~----~~~V~~~~ekp~~~--------~~~l~~~Giyif~~~il-~~l~~~~~~~ 303 (523)
+.+|+.+.+.. ....||++..+++ .++|..|.|||... ...++++|+|+|+++.| +.|.+..+..
T Consensus 134 ~~vt~~i~p~~--~~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~ 211 (336)
T 2x65_A 134 GLFTFGIVPTR--PETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSI 211 (336)
T ss_dssp SEEEEEECCCS--CCSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHHHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHH
T ss_pred CeEEEEeeccc--CCCCceEEEECCccCCCccEEEEEEECCChHHHHHHHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHH
Confidence 67777666543 2368999987641 15899999999642 23589999999999876 6665543321
Q ss_pred ccccccccccccCCCCCcccccchhhhhhh---------hhcC-CcEEEEEcchhHhhhccchhhhhc
Q psy17795 304 QDEFYNGNYMVNGKDTDFNHIQLEKEIIMP---------LAGS-GKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 304 ~~e~~~~~~~~~~~~~~~~~~~~~~dil~~---------li~~-g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
...+.. -+. .+. +|..++++. ++++ .++++++.+++|.|+|++++|+++
T Consensus 212 ~~~~~~-------~~~-~~e-~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 212 YENLKD-------VDP-RNF-EELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp HHHHTT-------CCT-TCH-HHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HHHHHH-------hhh-hhh-hHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 000000 000 111 333566664 3444 469999999999999999999887
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=205.92 Aligned_cols=226 Identities=16% Similarity=0.136 Sum_probs=151.8
Q ss_pred cceeEEEEecCCCCCCcCCCCC-CCCCcccceeCC-cchHHHHHHHHhcCCCccEEEEEccCC-hHHHHHHHHhhhhccC
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLS-LDSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYYP-SADLQKFVLDMVQEYK 168 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT-~~~pK~ll~i~g-~pli~~~l~~~~~~~g~~~i~vv~~~~-~~~i~~~l~~~~~~~~ 168 (523)
|.|.+|||||| .||||+||| ...||+|+|++| +|||+|+++++.+..++++++|++++. .+.+.+++.+
T Consensus 1 M~m~~VILAgG--~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~------ 72 (337)
T 2cu2_A 1 MKTYALVMAGG--RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG------ 72 (337)
T ss_dssp CCEEEEEECCC--CCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS------
T ss_pred CCeEEEEEcCC--CcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc------
Confidence 45889999999 999999999 689999999999 999999999999855899999999874 4455555443
Q ss_pred eeEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc--cCCcceEEEEc---cch---HH------HHHHHHh
Q psy17795 169 INIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH--WVQEAVYFTLE---IRS---DV------VILMHSL 232 (523)
Q Consensus 169 ~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~--~~~d~~~Lvl~---i~~---D~------l~~~h~~ 232 (523)
..+ +.++.+.| |+.++. .. +. ..++. +++++ .+. ++ ++++|++
T Consensus 73 ~~~--i~e~~~~g-----------------ta~ai~~a~~-l~~~~~~~~-~lvl~~D~~~~~~~~~~~~l~~~~~~~~~ 131 (337)
T 2cu2_A 73 IRL--LLEPLGRD-----------------TAGAVLLGVA-EALKEGAER-LLVLPADHYVGDDEAYREALATMLEAAEE 131 (337)
T ss_dssp SEE--EEESSCCH-----------------HHHHHHHHHH-HHHHHTCSE-EEEEESSCEESCHHHHHHHHHHHHHHCCT
T ss_pred Cce--EecCCCCC-----------------cHHHHHHHHH-HhccCCCCE-EEEEECCccCCCHHHHHHHHHHHHHHHHc
Confidence 122 34455566 999888 44 42 12355 88887 222 22 2222322
Q ss_pred cCCcceEEEEEEeeCCCCCcceeEEEEcCC---CCcEEEEeecCCCcc------c-ceeeeeEEEeeHHHH-HHHHHhhc
Q psy17795 233 YSMAILVTVMATEATRQQSVYYGCIVRKQQ---TSEISHYVEKPSTFV------S-TLVNCGVYLFSLDIF-QNIAAVFQ 301 (523)
Q Consensus 233 ~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~---~~~V~~~~ekp~~~~------~-~l~~~Giyif~~~il-~~l~~~~~ 301 (523)
+ +.+|+...+.. .+..||++..+++ .++|..|.|||.... + +++++|+|+|++++| +.+++..+
T Consensus 132 -~--~~vt~~i~p~~--~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~~~n~Giy~f~~~~ll~~l~~~~p 206 (337)
T 2cu2_A 132 -G--FVVALGLRPTR--PETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLP 206 (337)
T ss_dssp -T--CEEEEEECCSS--CCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCH
T ss_pred -C--CeEEEeeccCC--CCCCceEEEECCcccccCeEEEEEeCCChHHHHHHhhcCCEEEEEEEEEeHHHHHHHHHHHCH
Confidence 4 66777766543 3468999987642 158999999996321 1 799999999999976 77765433
Q ss_pred ccccccccccccccCCCCCcccccchhhhhhh---------hhcC-CcEEEEEcchhHhhhccchhhhhcc
Q psy17795 302 SKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMP---------LAGS-GKAYVYQTSKWWSQLKSAGSAIYAN 362 (523)
Q Consensus 302 ~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~---------li~~-g~v~~~~~~g~w~dIgt~~dyl~an 362 (523)
.....+.. . + .+. ++ .+.++. ++++ .++++++.+++|.|+|++++|+++.
T Consensus 207 ~~~~~~~~-----~--~--~~~-~~-~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~ 266 (337)
T 2cu2_A 207 SHHEALER-----L--L--AGA-SL-EEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (337)
T ss_dssp HHHHHHHH-----H--H--TTC-CH-HHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred HHHHHHHH-----H--h--cCC-cH-HHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence 21100000 0 0 000 01 233332 3333 4699999999999999999987763
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=177.14 Aligned_cols=216 Identities=13% Similarity=0.094 Sum_probs=147.1
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|++.+||||+| .||||. ||+|++|+|||||+|+++.+.+. ++++|+|+++ .+.+.+++.. ++.++
T Consensus 8 M~~~aIIlA~G--~stRl~------~K~L~~i~GkPli~~~l~~l~~~-~i~~VvVvt~--~~~i~~~~~~----~g~~v 72 (256)
T 3tqd_A 8 MEFRVIIPARF--DSTRLP------GKALVDIAGKPMIQHVYESAIKS-GAEEVVIATD--DKRIRQVAED----FGAVV 72 (256)
T ss_dssp -CCEEEEECCC--C---CT------TGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEES--CHHHHHHHHH----TTCEE
T ss_pred CCceEEEEcCC--CCCCCC------CCCeeeECCchHHHHHHHHHHhC-CCCEEEEECC--HHHHHHHHHH----cCCeE
Confidence 56789999999 999994 79999999999999999999986 8999999986 3678887765 56777
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH-Hhhcc-cCCcceEEEEc----cc-h-HH--HHHHHHhc-CCcceEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLH-WVQEAVYFTLE----IR-S-DV--VILMHSLY-SMAILVT 240 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~-~~~d~~~Lvl~----i~-~-D~--l~~~h~~~-~~~~~~t 240 (523)
.+..++.+.| ++.... .+++. ...+. +++++ ++ . ++ +++.+++. + +.++
T Consensus 73 ~~~~~~~~~G-----------------t~~i~~a~~~l~~~~~d~-vlv~~gD~Pli~~~~i~~li~~~~~~~~--~~~a 132 (256)
T 3tqd_A 73 CMTSSDHQSG-----------------TERIAEAAVALGFEDDEI-IVCLQGDEPLIPPDAIRKLAEDLDEHDN--VKVA 132 (256)
T ss_dssp EECCTTCCSH-----------------HHHHHHHHHHTTCCTTCE-EEEECTTCCCCCHHHHHHHHHHHHHCC----CEE
T ss_pred EEeCCCCCCc-----------------HHHHHHHHHHhCcCCCCE-EEEEeCCcccCCHHHHHHHHHHHHhCCC--CCEE
Confidence 6655666666 665222 55553 12355 77776 22 2 23 67777654 4 5677
Q ss_pred EEEEeeCC----CCCcceeEEEEcCCCCcEEEEeecCCCc--------------ccceeeeeEEEeeHHHHHHHHHhhcc
Q psy17795 241 VMATEATR----QQSVYYGCIVRKQQTSEISHYVEKPSTF--------------VSTLVNCGVYLFSLDIFQNIAAVFQS 302 (523)
Q Consensus 241 v~~~~~~~----~~~~~~g~v~~d~~~~~V~~~~ekp~~~--------------~~~l~~~Giyif~~~il~~l~~~~~~ 302 (523)
+++.++.. .+|..++ ++.|++ |+++.|.++|... .+++...|+|.|++++|+.+....+.
T Consensus 133 ~l~~~v~~~~~~~~p~~vk-vv~d~~-g~~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l~~s 210 (256)
T 3tqd_A 133 SLCTPITEVDELFNPHSTK-VVLNRR-NYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDAC 210 (256)
T ss_dssp EEEEECCCHHHHTCTTSCE-EEECTT-SBEEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHSCCC
T ss_pred EEeeEcCCHHHhhCCCccE-EEECCC-CEEeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhCCCC
Confidence 77777632 2344444 467876 9999999997521 25689999999999999988764222
Q ss_pred cccccccccccccCCCCCcccccchhhhhhhhhcCC-cEEEEEcchh-HhhhccchhhhhccH
Q psy17795 303 KQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKW-WSQLKSAGSAIYANR 363 (523)
Q Consensus 303 ~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~-w~dIgt~~dyl~an~ 363 (523)
. ++. ..++ +.+.. +..| ++.++..+++ |.+|+||+||.+++.
T Consensus 211 ~---lE~-------------~e~l--eqlr~-le~G~~i~~~~~~~~~~~~idtpeDl~~a~~ 254 (256)
T 3tqd_A 211 P---AEK-------------MEAL--EQLRI-LWHGGRIHMVVAKSKCPPGVDTEEDLERVRA 254 (256)
T ss_dssp H---HHH-------------HHTC--TTHHH-HHTTCCCEEEECSSCCCCCCSSHHHHHHHHT
T ss_pred c---ccc-------------hhhh--HHHHH-HHCCCeEEEEEeCCCCCCCcCCHHHHHHHHH
Confidence 1 100 0001 22333 3455 6999998875 899999999987754
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=177.35 Aligned_cols=219 Identities=12% Similarity=0.042 Sum_probs=151.1
Q ss_pred cccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe
Q psy17795 90 VSCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 90 ~~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~ 169 (523)
..|.+.|||||+| .|||| | +|+|++++|+|||+|+++++.++ ++++|+|+++ .+.+.+++.. ++.
T Consensus 15 ~~M~~~aIIlA~G--~stRl-p-----~K~L~~i~GkPmi~~~l~~l~~~-~i~~IvV~t~--~~~i~~~~~~----~g~ 79 (264)
T 3k8d_A 15 SHMSFVVIIPARY--ASTRL-P-----GKPLVDINGKPMIVHVLERARES-GAERIIVATD--HEDVARAVEA----AGG 79 (264)
T ss_dssp ---CCEEEEECCS--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEES--CHHHHHHHHH----TTC
T ss_pred CCCceEEEEEcCC--CCCCC-C-----CcceeeECCeEHHHHHHHHHHhC-CCCEEEEECC--HHHHHHHHHH----cCC
Confidence 4467889999999 99999 3 59999999999999999999986 8999999885 4678777765 566
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc----cc-h-HH--HHHHHHhcCCcce
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE----IR-S-DV--VILMHSLYSMAIL 238 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~----i~-~-D~--l~~~h~~~~~~~~ 238 (523)
++.+..++.+.| |+. +. ...+. ...+. +++++ ++ . ++ +++.+.+.+ ++
T Consensus 80 ~v~~~~~~~~~G-----------------t~~-i~~~~~~l~~~~~d~-vlv~~gD~Pli~~~~i~~li~~~~~~~--~~ 138 (264)
T 3k8d_A 80 EVCMTRADHQSG-----------------TER-LAEVVEKCAFSDDTV-IVNVQGDEPMIPATIIRQVADNLAQRQ--VG 138 (264)
T ss_dssp EEEECCTTCCSH-----------------HHH-HHHHHHHHTCCTTCE-EEEECTTCTTCCHHHHHHHHHHHHTSS--CS
T ss_pred EEEEecCCCCCC-----------------HHH-HHHHHHHhccCCCCE-EEEEcCCcccCCHHHHHHHHHHHhhcC--CC
Confidence 665555666666 655 44 44443 12455 77776 22 2 23 777787766 88
Q ss_pred EEEEEEeeCCC----CCcceeEEEEcCCCCcEEEEeecCCC-c------------ccceeeeeEEEeeHHHHHHHHHhhc
Q psy17795 239 VTVMATEATRQ----QSVYYGCIVRKQQTSEISHYVEKPST-F------------VSTLVNCGVYLFSLDIFQNIAAVFQ 301 (523)
Q Consensus 239 ~tv~~~~~~~~----~~~~~g~v~~d~~~~~V~~~~ekp~~-~------------~~~l~~~Giyif~~~il~~l~~~~~ 301 (523)
+++++.++.++ ++..++ ++.|++ |+++.|.++|.. . .+++.++|+|.|++++++.+....+
T Consensus 139 ~~~~~~~v~d~~~~~~p~~vk-Vv~d~~-g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~~~ 216 (264)
T 3k8d_A 139 MATLAVPIHNAEEAFNPNAVK-VVLDAE-GYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQP 216 (264)
T ss_dssp EEEEEEECCSHHHHTCTTSCE-EEECTT-SBEEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCC
T ss_pred EEEEEEEcCCHHHccCCCceE-EEECCC-CeEEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHhCCC
Confidence 89998887531 222223 557877 999999999742 1 2568999999999999988866321
Q ss_pred ccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEc-chhHhhhccchhhhhccHH
Q psy17795 302 SKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQT-SKWWSQLKSAGSAIYANRH 364 (523)
Q Consensus 302 ~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~-~g~w~dIgt~~dyl~an~~ 364 (523)
.+++.. ..+ +.+..|....++.++.. ..+|.+|+||+||..+...
T Consensus 217 ---~~lE~~-------------e~l--eqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~ 262 (264)
T 3k8d_A 217 ---SPLEHI-------------EML--EQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAE 262 (264)
T ss_dssp ---CHHHHH-------------HTC--TTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHH
T ss_pred ---ChhhhH-------------HHH--HHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHH
Confidence 122210 001 22333333335888754 5678999999999888653
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-19 Score=171.33 Aligned_cols=217 Identities=15% Similarity=0.175 Sum_probs=147.9
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCc-cEEEEEccCChHHHHHHHHhhhhccCee
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNL-KEIIILGYYPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~-~~i~vv~~~~~~~i~~~l~~~~~~~~~~ 170 (523)
|++.+|||||| .|+|| | ||+|+|++|+|||+|+++.+.+. ++ ++|+|++++ +.+.+++.+ +++.
T Consensus 1 m~~~aiIlA~G--~~~R~-~-----~K~l~~i~g~pli~~~i~~~~~~-~~~~~ivvv~~~--~~i~~~~~~----~~~~ 65 (245)
T 1h7e_A 1 SKAVIVIPARY--GSSRL-P-----GKPLLDIVGKPMIQHVYERALQV-AGVAEVWVATDD--PRVEQAVQA----FGGK 65 (245)
T ss_dssp CCEEEEEECCS--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHTC-TTCCEEEEEESC--HHHHHHHHH----TTCE
T ss_pred CCeEEEEEcCC--cCCCC-C-----CCcccccCCchHHHHHHHHHHhC-CCCCeEEEECCc--HHHHHHHHH----cCCe
Confidence 45789999999 99999 6 89999999999999999999986 75 999999986 577777765 4555
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH-HhhcccCCcceEEEEc----cc--hHH--HHHHHHhc-CCcceEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLHWVQEAVYFTLE----IR--SDV--VILMHSLY-SMAILVT 240 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~~~~d~~~Lvl~----i~--~D~--l~~~h~~~-~~~~~~t 240 (523)
+....++.+.| +++++. ...+. .+. +++++ ++ .++ +++.|.+. + ++++
T Consensus 66 ~~~~~~~~~~g-----------------~~~~~~~~~~~~--~~~-~lv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~ 123 (245)
T 1h7e_A 66 AIMTRNDHESG-----------------TDRLVEVMHKVE--ADI-YINLQGDEPMIRPRDVETLLQGMRDDPA--LPVA 123 (245)
T ss_dssp EEECCSCCSSH-----------------HHHHHHHHHHSC--CSE-EEECCTTCTTCCHHHHHHHHHHHHHCTT--CCEE
T ss_pred EEeCCCccCCc-----------------HHHHHHHHHhCC--CCE-EEEEcCCcCcCCHHHHHHHHHHHHhCCC--CCEE
Confidence 42222334455 766665 44443 355 77776 22 123 77777766 6 6777
Q ss_pred EEEEeeCCC---CCcceeEEEEcCCCCcEEEEeecCCC-c-----ccceeeeeEEEeeHHHHHHHHHhhccccccccccc
Q psy17795 241 VMATEATRQ---QSVYYGCIVRKQQTSEISHYVEKPST-F-----VSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGN 311 (523)
Q Consensus 241 v~~~~~~~~---~~~~~g~v~~d~~~~~V~~~~ekp~~-~-----~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~ 311 (523)
+++.+.... ++.... +..+++ |++..|.+++.. . ...+.++|+|+|+++.+..+.+ . ..+++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~-~~~~~~-g~~~~~~~~~~~~~r~~~~~~~~~~~g~y~~~~~~l~~~~~-~--~~~~~~~-- 196 (245)
T 1h7e_A 124 TLCHAISAAEAAEPSTVK-VVVNTR-QDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQ-L--PESMPEQ-- 196 (245)
T ss_dssp EEEEEECHHHHTCTTSCE-EEECTT-CBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGG-S--CCCHHHH--
T ss_pred EEeecCCHHHhcCCCCcE-EEECCC-CcEEEeecCCCCCCcccccCceeEEEEEEEcCHHHHHHHHh-C--CCCcccc--
Confidence 777665211 111112 233555 899999886432 1 2357899999999987654322 1 1344443
Q ss_pred ccccCCCCCcccccchhhhhhhhh--cCC-cEEEEEcchhHhhhccchhhhhccHHHHhh
Q psy17795 312 YMVNGKDTDFNHIQLEKEIIMPLA--GSG-KAYVYQTSKWWSQLKSAGSAIYANRHYLQL 368 (523)
Q Consensus 312 ~~~~~~~~~~~~~~~~~dil~~li--~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~l~~ 368 (523)
+|.++.+. +.| ++.++..+++|.+|+|++||..+...+..+
T Consensus 197 ----------------td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~~ 240 (245)
T 1h7e_A 197 ----------------AESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQE 240 (245)
T ss_dssp ----------------HHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHH
T ss_pred ----------------chhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Confidence 45555443 444 699999999999999999999988766543
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=9e-19 Score=168.73 Aligned_cols=214 Identities=15% Similarity=0.155 Sum_probs=142.7
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|++.||||||| .|+||+ ||+|+|++|+|||+|+++++.+. +++|+|++++ +++.+++.+ + .++
T Consensus 1 m~~~aiIlA~G--~g~R~~------~K~l~~i~g~pli~~~l~~~~~~--~~~i~v~~~~--~~i~~~~~~----~-~~~ 63 (234)
T 2y6p_A 1 MRRAVIIPARL--GSTRLK------EKPLKNLLGKPLIRWVVEGLVKT--GERVILATDS--ERVKEVVED----L-CEV 63 (234)
T ss_dssp -CEEEEEECCS--CCTTTT------TGGGCEETTEEHHHHHHHHHHTT--TSCEEEEESC--HHHHHHHTT----T-SEE
T ss_pred CceEEEEEcCC--CCCCCC------CCcceeECCEEHHHHHHHHHHHh--CCEEEEECCh--HHHHHHHHh----c-eEE
Confidence 45679999999 999997 79999999999999999999974 8999999976 577777764 3 455
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH-HhhcccCCcceEEEEc--c-c---hHH--HHHHHHhcCCcceEEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLHWVQEAVYFTLE--I-R---SDV--VILMHSLYSMAILVTVM 242 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~~~~d~~~Lvl~--i-~---~D~--l~~~h~~~~~~~~~tv~ 242 (523)
.+..++.+.| +++++. .+.+. .+. +++++ . + .++ +++.|.+.+ +.++++
T Consensus 64 ~~~~~~~~~g-----------------~~~~~~~~~~~~--~~~-vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~~~~~ 121 (234)
T 2y6p_A 64 FLTPSDLPSG-----------------SDRVLYVVRDLD--VDL-IINYQGDEPFVYEEDIKLIFRELEKGE--RVVTLA 121 (234)
T ss_dssp EECCTTCCSH-----------------HHHHHHHHTTCC--CSE-EEECCTTCCCCCHHHHHHHHHHHHHTC--SEEEEE
T ss_pred EECCcccccc-----------------hHHHHHHHHhCC--CCE-EEEecCCcCcCCHHHHHHHHHHHHhCC--CeEEEe
Confidence 4433434455 677665 44443 356 77776 2 2 233 777777665 545555
Q ss_pred EEeeC-CCCCcceeEEEEcCCCCcEEEEeecCCCc-c-----cceeeeeEEEeeHHHHHHHHHhhccccccccccccccc
Q psy17795 243 ATEAT-RQQSVYYGCIVRKQQTSEISHYVEKPSTF-V-----STLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVN 315 (523)
Q Consensus 243 ~~~~~-~~~~~~~g~v~~d~~~~~V~~~~ekp~~~-~-----~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~ 315 (523)
..... ..++..++ +..|++ |+|..|.|||... . ..+.++|+|+|+++.+..+....... +..
T Consensus 122 ~~~~~~~~~~~~~~-~~~~~~-g~v~~~~e~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~~~---~~~------ 190 (234)
T 2y6p_A 122 RKDKEAYERPEDVK-VVLDRE-GYALYFSRSPIPYFRKNDTFYPLKHVGIYGFRKETLMEFGAMPPSK---LEQ------ 190 (234)
T ss_dssp EECSGGGGCTTSCE-EEECTT-SBEEEEESSCCSCCSSCCSSCCEEEEEEEEEEHHHHHHHHHSCCCH---HHH------
T ss_pred cCCHHHhcCCCceE-EEEcCC-CCEeeeecCCCCcccccccceeeEEEEEEEcCHHHHHHHHhCCCCc---cch------
Confidence 44211 01233444 345666 8999999987421 1 35789999999999887665421110 000
Q ss_pred CCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHH
Q psy17795 316 GKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRH 364 (523)
Q Consensus 316 ~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~ 364 (523)
.+... .+..+.+..++.++..+++|.+|+|++||..++..
T Consensus 191 --------~d~~~-~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~ 230 (234)
T 2y6p_A 191 --------IEGLE-QLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEK 230 (234)
T ss_dssp --------HHTCT-HHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHH
T ss_pred --------hhHHH-HHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHH
Confidence 00001 22333344569999999999999999999988764
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=171.98 Aligned_cols=208 Identities=17% Similarity=0.178 Sum_probs=129.8
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCee
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~ 170 (523)
|+.|.+|||||| .|+||+|+ ||+|+|++|+|||+|+++.+.+. +++|+|++ +..+++.+++.+ .++.+
T Consensus 16 m~~~~~iIlA~G--~g~R~~~~----~K~l~~i~g~pli~~~l~~l~~~--~~~i~vv~-~~~~~~~~~~~~---~~~~~ 83 (232)
T 2xme_A 16 IKLMKAVILAAG--LGTRLGGV----PKPLVRVGGCEIILRTMKLLSPH--VSEFIIVA-SRYADDIDAFLK---DKGFN 83 (232)
T ss_dssp CCCEEEEEEECC--------CC----CGGGCEETTEEHHHHHHHHHGGG--EEEEEEEE-STTHHHHHHHHT---TSCCC
T ss_pred cccceEEEECCc--CcCcCCCC----CcEEeEECCEEHHHHHHHHHHHh--CCEEEEEe-CChHHHHHHHHH---hcCCc
Confidence 556899999999 99999985 99999999999999999999974 89999999 766677777643 35556
Q ss_pred EEEEecccc-cchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cchHH-HHHHHHhcCCcceEEEEEE
Q psy17795 171 IRYLQEFWD-IIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRSDV-VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 171 i~~~~~~~~-~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~D~-l~~~h~~~~~~~~~tv~~~ 244 (523)
+.++.+..+ .| ++++++ .+++. ++ +++++ ..++. +++...+.. . +++..
T Consensus 84 ~~~v~~~~~~~g-----------------~~~~i~~a~~~~~---~~-~lv~~~D~p~~~~~~~~l~~~~--~--~~~~~ 138 (232)
T 2xme_A 84 YKIVRHDRPEKG-----------------NGYSLLVAKNHVE---DR-FILTMGDHVYSQQFIEKAVRGE--G--VIADR 138 (232)
T ss_dssp EEEEECSCGGGC-----------------HHHHHHTTGGGCC---SS-EEEEETTEEECHHHHHHHTTCC--E--EEEES
T ss_pred EEEEECCCCCCC-----------------cHHHHHHHHHHCC---CC-EEEEcCCcccCHHHHHHHHhCC--C--cEEEc
Confidence 767765433 45 889998 55554 45 77776 22233 333333322 2 22221
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccc
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 324 (523)
.....++..++.+..+ + |++..+.|+|. ..+++++|+|++++++|+.+.+... .+++
T Consensus 139 ~~~~~~~~~~~~v~~~-~-g~v~~~~~~~~--~~~~~~~g~~~~~~~~~~~l~~~~~--~g~~----------------- 195 (232)
T 2xme_A 139 EPRFVDIGEATKIRVE-D-GRVAKIGKDLR--EFDCVDTGFFVLDDSIFEHAEKLRD--REEI----------------- 195 (232)
T ss_dssp SCSSSCTTTSCEEEEE-T-TEEEEEETTCS--SCSEEEEEEEEECTTHHHHHGGGTT--SSCC-----------------
T ss_pred cccccCCCcceEEEEc-C-CEEEEeecCCC--CcceEEEEEEEECHHHHHHHHHHHh--cChh-----------------
Confidence 1111123456767666 4 89999998874 4577899999999999987765321 1121
Q ss_pred cchhhhhhhhhcCCcEEEEEcc-hhHhhhccchhhhhccH
Q psy17795 325 QLEKEIIMPLAGSGKAYVYQTS-KWWSQLKSAGSAIYANR 363 (523)
Q Consensus 325 ~~~~dil~~li~~g~v~~~~~~-g~w~dIgt~~dyl~an~ 363 (523)
.+ ++++.. +.+..+..+ ++|.+++|++||..++.
T Consensus 196 ~l-~~ll~~----~~v~~~~~~~~~~~dI~tpeDl~~a~~ 230 (232)
T 2xme_A 196 PL-SEIVKL----ARLPVTYVDGELWMDVDTKEDVRRANR 230 (232)
T ss_dssp CH-HHHHHH----HTCBEEECCSCCEEEEECC--------
T ss_pred HH-HHHHHc----CCEEEEEECCCCEEeCCCHHHHHHHHh
Confidence 12 345442 345555554 68999999999987765
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-20 Score=190.58 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=33.7
Q ss_pred CCCcceeEEEEcCCC-CcEEEEeecCCCccc-ceeeeeEEEeeHHHHH
Q psy17795 249 QQSVYYGCIVRKQQT-SEISHYVEKPSTFVS-TLVNCGVYLFSLDIFQ 294 (523)
Q Consensus 249 ~~~~~~g~v~~d~~~-~~V~~~~ekp~~~~~-~l~~~Giyif~~~il~ 294 (523)
+++..+|...+|+.. ++| .|.|||+.... .+.++|+|+|++++++
T Consensus 43 ~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~~~~~~aGiyI~~~~~l~ 89 (374)
T 2iu8_A 43 GATLLSGVEEIEEAKTAHI-TFLDNEKYAKHLKSSEAGAIIISRTQFQ 89 (374)
T ss_dssp TTCEECEECCTTTCCTTEE-EECCSSSTHHHHHTCCCSEEEEEHHHHH
T ss_pred CcceEEEEeccccCCCCeE-EEEeCchhhhhhhcCCcEEEEeChhHhh
Confidence 456788988777421 566 99999985433 6789999999998764
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-18 Score=165.98 Aligned_cols=220 Identities=12% Similarity=0.109 Sum_probs=144.8
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|+|.+|||||| .|+|| | +|+|+|++|+|||+|+++.+.+. ++++|+|++++ +.+.+++.. +++.+
T Consensus 1 m~~~aiIlA~G--~g~R~-~-----~K~l~~~~gkpli~~~l~~l~~~-~~~~ivvv~~~--~~i~~~~~~----~~~~~ 65 (262)
T 1vic_A 1 MSFTVIIPARF--ASSRL-P-----GKPLADIKGKPMIQHVFEKALQS-GASRVIIATDN--ENVADVAKS----FGAEV 65 (262)
T ss_dssp -CCEEEEECCC--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEESC--HHHHHHHHH----TTCEE
T ss_pred CCcEEEEEcCC--CCCCC-C-----CCccccCCCeEHHHHHHHHHHhC-CCceEEEECCc--HHHHHHHHh----cCCEE
Confidence 45679999999 99999 4 49999999999999999999986 88999999875 467777754 45555
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc----cc--hHH--HHHHHHhcCCcceEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE----IR--SDV--VILMHSLYSMAILVT 240 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~----i~--~D~--l~~~h~~~~~~~~~t 240 (523)
.+..+..+.| ++ .+. ...+. ...+. +++++ ++ .++ +++.+.+.+ ++++
T Consensus 66 ~~~~~~~~~g-----------------~~-~~~~~~~~l~~~~~~~-vlv~~~D~P~i~~~~i~~l~~~~~~~~--~~~~ 124 (262)
T 1vic_A 66 CMTSVNHNSG-----------------TE-RLAEVVEKLAIPDNEI-IVNIQGDEPLIPPVIVRQVADNLAKFN--VNMA 124 (262)
T ss_dssp EECCCSSCCH-----------------HH-HHHHHHHHTTCCTTCE-EEECCTTCTTCCHHHHHHHHHHHHHHT--CSEE
T ss_pred EECCccccCC-----------------hH-HHHHHHHHhccCCCCE-EEEEeCCcCccCHHHHHHHHHHHHhcC--CCEE
Confidence 2211233444 44 232 33443 12355 77776 22 233 777777666 6777
Q ss_pred EEEEeeCCCC---CcceeEEEEcCCCCcEEEEeecCC-----------------CcccceeeeeEEEeeHHHHHHHHHhh
Q psy17795 241 VMATEATRQQ---SVYYGCIVRKQQTSEISHYVEKPS-----------------TFVSTLVNCGVYLFSLDIFQNIAAVF 300 (523)
Q Consensus 241 v~~~~~~~~~---~~~~g~v~~d~~~~~V~~~~ekp~-----------------~~~~~l~~~Giyif~~~il~~l~~~~ 300 (523)
+++.++.... ...++.+..|++ |++..|.+++. .+...+.++|+|+|+++++..+....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~ 203 (262)
T 1vic_A 125 SLAVKIHDAEELFNPNAVKVLTDKD-GYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWA 203 (262)
T ss_dssp EEEEECCCHHHHTCTTSCEEEECTT-SBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSC
T ss_pred EEEEecCCHHHhcCCCceEEEECCC-CCEeeeecCCCCcCCccccccccccccccccceEEEEEEEEeeHHHHHHHHhCC
Confidence 7777764210 123455555765 89999988741 22346899999999999887654321
Q ss_pred cccccccccccccccCCCCCcccccchhhhhhhhhcCC-cEEEEEcc-hhHhhhccchhhhhccHHHHh
Q psy17795 301 QSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTS-KWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 301 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~-g~w~dIgt~~dyl~an~~~l~ 367 (523)
....++. ++... +. ++..| ++.++..+ ++|.+|+|++||..++..+..
T Consensus 204 ~~~~~~~-----------------e~~~~-~~-~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~ 253 (262)
T 1vic_A 204 PTQLENL-----------------EKLEQ-LR-VLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAA 253 (262)
T ss_dssp CCHHHHH-----------------HTCTT-HH-HHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred CCchhhh-----------------hhHHH-HH-HHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHh
Confidence 1110000 00011 22 33334 69999988 799999999999998877654
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-18 Score=166.51 Aligned_cols=215 Identities=10% Similarity=0.102 Sum_probs=147.1
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHH-HHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHI-EACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l-~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
.+||||+| .|+||. +|+|++|+|+|||+|++ +.+.+. ++++|+|++++ +.+.+++.. ++.++.+
T Consensus 3 ~aiIlA~G--~stR~~------~K~L~~i~GkPli~~~i~~~~~~~-~~~~vvVvt~~--~~i~~~~~~----~g~~v~~ 67 (253)
T 4fcu_A 3 HIVIPARF--SSSRLP------GKPLLLIHDRPMILRVVDQAKKVE-GFDDLCVATDD--ERIAEICRA----EGVDVVL 67 (253)
T ss_dssp EEEEECCS--CCTTST------TGGGSEETTEEHHHHHHHHHHTCT-TCCEEEEEESC--HHHHHHHHT----TTCCEEE
T ss_pred EEEEEeCC--CCCCCC------CCceeeECCeEhHHHHHHHHHHhc-CCCEEEEECCH--HHHHHHHHH----cCCeEEE
Confidence 48999999 999996 49999999999999999 999986 89999999964 577777654 5666655
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--Hhhccc-CCcceEEEEc----cc-h-HH--HHHHHHhcCCcceEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW-VQEAVYFTLE----IR-S-DV--VILMHSLYSMAILVTVM 242 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~-~~d~~~Lvl~----i~-~-D~--l~~~h~~~~~~~~~tv~ 242 (523)
..+.++.| + +++. ...+.. ..+. +++++ ++ . ++ +++.+.+.. ++.++.+
T Consensus 68 ~~~~~~~G-----------------t-~~i~~a~~~~~~~~~d~-vlv~~gD~Pli~~~~i~~li~~~~~~~-~~~~at~ 127 (253)
T 4fcu_A 68 TSADHPSG-----------------T-DRLSEVARIKGWDADDI-IVNVQGDEPLLPAQLVQQVAKLLVDKP-NCSMSTL 127 (253)
T ss_dssp CCTTCCCH-----------------H-HHHHHHHHHHTCCTTCE-EEECCTTCTTCCHHHHHHHHHHHHHCT-TCSEEEE
T ss_pred eCCCCCCh-----------------H-HHHHHHHHhcCcCCCCE-EEEEeCCcccCCHHHHHHHHHHHHhCC-CCCEEEE
Confidence 55555666 4 2444 334431 2345 77766 22 2 23 777776652 1344433
Q ss_pred EEeeCC----CCCcceeEEEEcCCCCcEEEEeecCCC-------------cccceeeeeEEEeeHHHHHHHHHhhccccc
Q psy17795 243 ATEATR----QQSVYYGCIVRKQQTSEISHYVEKPST-------------FVSTLVNCGVYLFSLDIFQNIAAVFQSKQD 305 (523)
Q Consensus 243 ~~~~~~----~~~~~~g~v~~d~~~~~V~~~~ekp~~-------------~~~~l~~~Giyif~~~il~~l~~~~~~~~~ 305 (523)
+.+... .+|..+ .++.|++ |+++.|.++|.- ....+.++|+|.|++++|..+... .++
T Consensus 128 ~~~~~~~~~~~~p~~~-kvv~d~~-g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~~---~~~ 202 (253)
T 4fcu_A 128 CEPIHALDEFQRDSIV-KVVMSKQ-NEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTW---EMG 202 (253)
T ss_dssp EEECCCHHHHHCTTSC-EEEECTT-SBEEEEESSCCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTTS---CCC
T ss_pred eEEcCCHHHccCCCcc-EEEECCC-CeEEEecCCCCCCCCCcccccccccccceeEEEEEEEeCHHHHHHHHhC---CCC
Confidence 344321 245454 4567876 999999998631 134578999999999999877542 233
Q ss_pred ccccccccccCCCCCcccccchhhhhhhh--hcCC-cEEEEEcchh-HhhhccchhhhhccHHHHh
Q psy17795 306 EFYNGNYMVNGKDTDFNHIQLEKEIIMPL--AGSG-KAYVYQTSKW-WSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 306 e~~~~~~~~~~~~~~~~~~~~~~dil~~l--i~~g-~v~~~~~~g~-w~dIgt~~dyl~an~~~l~ 367 (523)
++++ .|.+..| ++.| ++.++..+++ |.+++|++|+..++..+.+
T Consensus 203 ~le~------------------~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~ 250 (253)
T 4fcu_A 203 KLEK------------------LESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVE 250 (253)
T ss_dssp HHHH------------------HHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGG
T ss_pred cccc------------------hhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHh
Confidence 4443 3444433 3445 5999999999 9999999999988765443
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=159.26 Aligned_cols=157 Identities=23% Similarity=0.309 Sum_probs=113.0
Q ss_pred CCcEEEEEcchh----HhhhccchhhhhccHHHHhhhcccCCcccccCCCceEecCcEECCCCEECCCCEECCCcEECCC
Q psy17795 337 SGKAYVYQTSKW----WSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDG 412 (523)
Q Consensus 337 ~g~v~~~~~~g~----w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~ 412 (523)
..+++++...+| |.|+++ ++.++..++..+....+..... +......++++.|++++.|++++.||++
T Consensus 38 ~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~I~~~a~I~~~v~Ig~~ 109 (240)
T 3r8y_A 38 TVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSA-----IPMLDLKGIKARIEPGAIIRDHVEIGDN 109 (240)
T ss_dssp TSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBC-----SCBCCCTTCSSEECTTCEEBSSCEECTT
T ss_pred cceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhc-----cchhhccCCCCEECCCCEECCCcEECCC
Confidence 345666655555 999988 7777877775433222211110 1111233556666677777777777777
Q ss_pred CEECCCCEE-eeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEe
Q psy17795 413 AVIGPGVRI-KESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITIL 490 (523)
Q Consensus 413 ~~I~~~~~I-~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iI 490 (523)
|.|++++.| .+++||++|.|+.+|.|. +++||++|.|++++.+.+.... .....+.|+++++||.+++|.++ ++|
T Consensus 110 ~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~--~~~~~~~Ig~~~~IG~~~~I~~~-~~I 186 (240)
T 3r8y_A 110 AVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEP--PSAKPVIVEDDVVIGANVVVLEG-VTV 186 (240)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSC--TTSCCCEECTTCEECTTCEECTT-CEE
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccC--CCCCCcEECCCCEECCCCEECCC-cEE
Confidence 777777777 457788899998888887 8999999999999999775332 23456899999999999999999 778
Q ss_pred CCCCEECCCcEEeC
Q psy17795 491 GDGVTVPGELIVLN 504 (523)
Q Consensus 491 G~~~~Ig~~~~i~~ 504 (523)
|++|+|+++++|.+
T Consensus 187 g~~~~I~~gsvV~~ 200 (240)
T 3r8y_A 187 GKGAVVAAGAVVTE 200 (240)
T ss_dssp CTTCEECTTCEECS
T ss_pred CCCCEECCCCEECC
Confidence 99999999999954
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=148.41 Aligned_cols=120 Identities=22% Similarity=0.242 Sum_probs=101.7
Q ss_pred ceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe-----------------ce
Q psy17795 383 CKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL-----------------NS 441 (523)
Q Consensus 383 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~-----------------~~ 441 (523)
..+.+++.|+++|+|++++.|++++.||++|+|+++|.|.. +.||++|.|+++|+|. .+
T Consensus 7 ~k~~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~ 86 (194)
T 3tv0_A 7 EKTQKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPM 86 (194)
T ss_dssp -----CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCE
T ss_pred hhcCCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCce
Confidence 35667899999999999999999999999999999999953 7999999999999994 36
Q ss_pred EECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeC
Q psy17795 442 IVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELT 514 (523)
Q Consensus 442 iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~ 514 (523)
+||+++.|+.++.+.+ +.|+++++|+.+++|.++ +.||++|+||++++| .+..|.++++|.
T Consensus 87 ~Ig~~~~i~~~~~i~~-----------~~Ig~~~~Ig~~~~I~~g-v~IG~~~~IgagsvV~~~~~Ip~~svv~ 148 (194)
T 3tv0_A 87 IIGTNNVFEVGCYSQA-----------MKMGDNNVIESKAYVGRN-VILTSGCIIGACCNLNTFEVIPENTVIY 148 (194)
T ss_dssp EECSSCEECTTCEECC-----------SEECSSCEECTTCEECTT-EEECSSCEECTTCEECCCEEECTTEEEE
T ss_pred EECCcceEecceeEee-----------eeecccceecceeeECCe-EEECCCCEECCCCEECCCcEECCCCEEE
Confidence 7888888888888865 578999999999999999 788999999999999 566777777664
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=147.21 Aligned_cols=123 Identities=12% Similarity=0.059 Sum_probs=100.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~ 458 (523)
+++.|.+++.|++++.|++++.|++++.||++|.|++++.|++ +.||++|.|++++.|. ++.|++++.||+++.+.+.
T Consensus 8 p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~ 87 (192)
T 3mqg_A 8 PTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNV 87 (192)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSC
T ss_pred CCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEecc
Confidence 5677788888888888888888888888888888888888866 8888888888888885 7888888888888888653
Q ss_pred CCCC-----CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 459 PCDP-----NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 459 ~~~~-----~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
.... ......+.|+++++||.+++|.+| +.||++|+|+++++|..
T Consensus 88 ~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g-~~Ig~~~~IgagsvV~~ 137 (192)
T 3mqg_A 88 YNPRAAIERKSEYRDTIVRQGATLGANCTVVCG-ATIGRYAFVGAGAVVNK 137 (192)
T ss_dssp SSCBTTBCCGGGCCCEEECTTCEECTTCEECTT-CEECTTCEECTTCEECS
T ss_pred cCCccccccccccCCcEECCCcEECCCCEECCC-CEECCCCEEcCCCEECc
Confidence 2211 122256899999999999999999 77899999999999943
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-16 Score=151.37 Aligned_cols=140 Identities=11% Similarity=0.168 Sum_probs=96.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEE-------------eceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLV-------------LNSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I-------------~~~iIg~~ 446 (523)
|++.|++++.|++++.|++++.|++++.||++|+|+++|+|. ++.||++|.|+++|.| .+++||++
T Consensus 6 p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~ 85 (270)
T 1j2z_A 6 KTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGED 85 (270)
T ss_dssp TTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSS
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCC
Confidence 577888888899999999999998899999999999999986 7899999999999998 46888888
Q ss_pred CEECCCcEEcCCCCCC--------CC-------CCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-------eC
Q psy17795 447 SKVGNWSRVEGTPCDP--------NP-------NKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-------LN 504 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~~--------~~-------~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-------~~ 504 (523)
+.|+++++|....... +. ....+.||++++|+.++.+..+ +.||++|+||++++| .+
T Consensus 86 ~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~-v~Igd~~~Ig~~a~V~~~v~IG~~ 164 (270)
T 1j2z_A 86 NLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGH-IEIGDYVNIGGLTAIHQFVRIAKG 164 (270)
T ss_dssp CEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECSSCEECTTCEECTTCEECTT
T ss_pred CEECCCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCc-cEECCCeEEecCCEECCCcEeCCc
Confidence 8888888886532211 00 0012333444444444444344 445666666666655 34
Q ss_pred eEEcCCcEeCCCCCCcc
Q psy17795 505 SIVLPYKELTRSFKNEI 521 (523)
Q Consensus 505 ~~v~~~~~i~~~~~~~~ 521 (523)
++|++++.|.+++|+..
T Consensus 165 a~Ig~~s~V~~dvp~~~ 181 (270)
T 1j2z_A 165 CMIAGKSALGKDVPPYC 181 (270)
T ss_dssp CEECTTCEECSBBCTTE
T ss_pred eEEecCcEecccCCCCe
Confidence 56666667777776544
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.7e-16 Score=151.11 Aligned_cols=140 Identities=15% Similarity=0.191 Sum_probs=87.1
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEE--------------eceEECC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLV--------------LNSIVGR 445 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I--------------~~~iIg~ 445 (523)
|++.|++++.|++++.|++++.|++++.||++|.|+++++|. ++.||++|.|++++.| .+++||+
T Consensus 9 p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~ 88 (266)
T 3r0s_A 9 PSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGK 88 (266)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECT
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECC
Confidence 456666666666666666666666666666666666666664 4666677777666666 4666666
Q ss_pred CCEECCCcEEcCCCCCC--------------CC-CCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-e------
Q psy17795 446 NSKVGNWSRVEGTPCDP--------------NP-NKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-L------ 503 (523)
Q Consensus 446 ~~~Ig~~~~i~~~~~~~--------------~~-~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~------ 503 (523)
+|.|++++.|....... +. ....+.||++++++.++.+..+ +.||++|+||++++| .
T Consensus 89 ~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~-v~Igd~~~Ig~~a~V~~~v~Ig~ 167 (266)
T 3r0s_A 89 NATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGH-VELGDFTVVGGLTPIHQFVKVGE 167 (266)
T ss_dssp TCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTCEECTTCEECT
T ss_pred CCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCC-eEECCCcEEccCCEECCCcEECC
Confidence 66666666664321100 00 0124566667777766666666 566888888877777 3
Q ss_pred CeEEcCCcEeCCCCCCcc
Q psy17795 504 NSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 504 ~~~v~~~~~i~~~~~~~~ 521 (523)
+++|++++.|.+++|+..
T Consensus 168 ~a~Vg~~s~V~~dvp~~~ 185 (266)
T 3r0s_A 168 GCMIAGASALSQDIVPFC 185 (266)
T ss_dssp TCEECSSCBBCSCBCTTE
T ss_pred CCEEccCCeEecccCCCe
Confidence 345555666666777544
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=149.91 Aligned_cols=140 Identities=19% Similarity=0.221 Sum_probs=81.7
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEE-------------e-ceEECC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLV-------------L-NSIVGR 445 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I-------------~-~~iIg~ 445 (523)
|++.|++.+.|++++.|++++.|++++.||++|.|++++.|.. +.||++|.|+++|.| . +++||+
T Consensus 5 p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~ 84 (259)
T 3hsq_A 5 PTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGD 84 (259)
T ss_dssp TTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECS
T ss_pred CCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECC
Confidence 4556666666666666666666666666666666666666643 666666666666666 2 566666
Q ss_pred CCEECCCcEEcCCCCC-------C-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-------eC
Q psy17795 446 NSKVGNWSRVEGTPCD-------P-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-------LN 504 (523)
Q Consensus 446 ~~~Ig~~~~i~~~~~~-------~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-------~~ 504 (523)
+|.|+++|.|...... . -.....+.|+++++++.++.+..+ +.||++|+||++++| .+
T Consensus 85 ~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~-v~Igd~~~Ig~~a~V~~~v~Ig~~ 163 (259)
T 3hsq_A 85 HNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGH-VTLGNFAFISGLVAVHQFCFVGDY 163 (259)
T ss_dssp SCEECTTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECSSCEECSSEEECTTCEECTT
T ss_pred CcEECCCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCc-cEECCCcEEeCCCEECCCCEECCC
Confidence 6666666666432110 0 000123455555555555555555 556777777776666 24
Q ss_pred eEEcCCcEeCCCCCCcc
Q psy17795 505 SIVLPYKELTRSFKNEI 521 (523)
Q Consensus 505 ~~v~~~~~i~~~~~~~~ 521 (523)
++|++++.|++++|+..
T Consensus 164 ~~Vg~~s~V~~dvp~~~ 180 (259)
T 3hsq_A 164 SMVAGLAKVVQDVPPYS 180 (259)
T ss_dssp CEECSSEEECSBBCTTE
T ss_pred CEECCCCEEcccCCCCc
Confidence 55666666777776544
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=149.47 Aligned_cols=140 Identities=19% Similarity=0.183 Sum_probs=89.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEE-------------eceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLV-------------LNSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I-------------~~~iIg~~ 446 (523)
+++.|++++.|++++.|++++.|++++.||++|.|+++++|. ++.||++|.|++++.| .+++||++
T Consensus 12 p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~ 91 (265)
T 4e6u_A 12 STAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNN 91 (265)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSS
T ss_pred CCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCC
Confidence 466666677777777777777777777777777777777774 3777777777777777 35667777
Q ss_pred CEECCCcEEcCCCC--------CC------CC-CCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-e------C
Q psy17795 447 SKVGNWSRVEGTPC--------DP------NP-NKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-L------N 504 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~--------~~------~~-~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~------~ 504 (523)
+.|++++.|..... +. +. ....+.|+++++++.++.+..+ ++||++|+||++++| . +
T Consensus 92 ~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~-v~Igd~~~Ig~~a~V~~~v~Ig~~ 170 (265)
T 4e6u_A 92 NLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGH-VHIGDHVIVGGNSGIHQFCKIDSY 170 (265)
T ss_dssp CEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECSSCEECTTCEECTTCEECTT
T ss_pred eEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCC-cEECCCeEEcCCCEECCCcEECCC
Confidence 77777766643211 00 00 0124566777777777766666 566777777777776 3 4
Q ss_pred eEEcCCcEeCCCCCCcc
Q psy17795 505 SIVLPYKELTRSFKNEI 521 (523)
Q Consensus 505 ~~v~~~~~i~~~~~~~~ 521 (523)
++|++++.|.+++|+..
T Consensus 171 ~~i~~~svV~~dvp~~~ 187 (265)
T 4e6u_A 171 SMIGGASLILKDVPAYV 187 (265)
T ss_dssp CEECTTCEECSBBCTTE
T ss_pred CEEcCCCEEcccCCCCe
Confidence 55666666777777544
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.4e-16 Score=144.93 Aligned_cols=119 Identities=14% Similarity=0.189 Sum_probs=103.7
Q ss_pred ceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe------ceEECCCCEECCC
Q psy17795 383 CKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL------NSIVGRNSKVGNW 452 (523)
Q Consensus 383 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~------~~iIg~~~~Ig~~ 452 (523)
+.+++.+.|++++.|++++.|.+++.||++|.|++++.|.. ++||++|.|+++|.|. +++||++|.||++
T Consensus 28 ~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~ 107 (191)
T 3ixc_A 28 PYAGVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHS 107 (191)
T ss_dssp CBTTBCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTT
T ss_pred cccCCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCC
Confidence 34556788888999999999888999999999999999963 5999999999999998 8999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEe
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKEL 513 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i 513 (523)
+.|.+ ++|+++++||++++|.++ ++||++|+|+++++| .+..|.+++.+
T Consensus 108 ~~i~~-----------~~Ig~~~~Ig~~~~I~~~-~~Ig~~~~Ig~gsvV~~~~~i~~~~~v 157 (191)
T 3ixc_A 108 CILHA-----------CTLGNNAFVGMGSIVMDR-AVMEEGSMLAAGSLLTRGKIVKSGELW 157 (191)
T ss_dssp CEECS-----------CEECTTCEECTTCEECTT-CEECTTCEECTTCEECTTCEECTTEEE
T ss_pred CEEEC-----------CEECCCCEECCCCEEeCC-eEECCCCEECCCCEECCCcCcCCCeEE
Confidence 99975 689999999999999999 778999999999999 45666666654
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=151.59 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=97.2
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEE-------------eceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLV-------------LNSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I-------------~~~iIg~~ 446 (523)
+++.|++++.|++++.|++++.|++++.||++|.|+++++|. ++.||++|.|+++|.| .+++||++
T Consensus 27 p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~ 106 (283)
T 4eqy_A 27 PTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDR 106 (283)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSS
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEECCC
Confidence 577788888888888888888888888888888888888885 5888888888888888 36788888
Q ss_pred CEECCCcEEcCCCCCC--------------CC-CCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-e------C
Q psy17795 447 SKVGNWSRVEGTPCDP--------------NP-NKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-L------N 504 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~~--------------~~-~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~------~ 504 (523)
+.|+++|.|....... +. ....+.||++++++.++.+..+ ++||++|+||++++| . +
T Consensus 107 ~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~-v~Igd~~~Ig~~a~V~~~v~Ig~~ 185 (283)
T 4eqy_A 107 NTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGH-VEIGDWAIVGGMSGVHQYVRIGAH 185 (283)
T ss_dssp CEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTCEECTTCEECTT
T ss_pred cccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCC-cEECCCeEEecCCEEcCCeEECCC
Confidence 8888888876422110 00 0134556666666666666666 566777777777777 3 3
Q ss_pred eEEcCCcEeCCCCCCcc
Q psy17795 505 SIVLPYKELTRSFKNEI 521 (523)
Q Consensus 505 ~~v~~~~~i~~~~~~~~ 521 (523)
++|++++.|.+++|+..
T Consensus 186 ~vvg~~s~V~~dvp~~~ 202 (283)
T 4eqy_A 186 SMLGGASALVQDIPPFV 202 (283)
T ss_dssp CEECTTCEECSBBCTTE
T ss_pred cEECCCCeEecccCCCc
Confidence 45556666666666543
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=147.27 Aligned_cols=217 Identities=12% Similarity=0.056 Sum_probs=132.5
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChH-HHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSA-DLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~-~i~~~l~~~~~~~~~ 169 (523)
||.+.+|||||| .|+||++ ..+||+|++++|+|||+|+|+++.+.+.+++|+||+++... .+.+.+.... ++.
T Consensus 1 M~~~~aIIlAaG--~g~Rm~~--~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~--~~~ 74 (246)
T 3f1c_A 1 MSLIYAQILAGG--KGTRMGN--VSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYI--SDD 74 (246)
T ss_dssp -CCEEEEEECC-------C-C--SSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHC--CCT
T ss_pred CCccEEEEECCc--cccccCC--CCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhC--CCC
Confidence 456789999999 9999987 57899999999999999999999986349999999987443 3455554421 122
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhccc-----CCcceEEEEc----cc-h-HH--HHHHHHhcC
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW-----VQEAVYFTLE----IR-S-DV--VILMHSLYS 234 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~-----~~d~~~Lvl~----i~-~-D~--l~~~h~~~~ 234 (523)
.+.++... .+ ..++++ .+++.. ..+. +|+++ ++ . ++ +++.+.+.+
T Consensus 75 ~~~~~~~~--~~-----------------~~~sv~~al~~l~~~~~~~~~~~-vlv~~~d~Pli~~~~i~~li~~~~~~~ 134 (246)
T 3f1c_A 75 RIVVIEGG--ED-----------------RNETIMNGIRFVEKTYGLTDDDI-IVTHDAVRPFLTHRIIEENIDAALETG 134 (246)
T ss_dssp TEEEEECC--SS-----------------HHHHHHHHHHHHHHHTCCCTTCE-EEEEETTCTTCCHHHHHHHHHHHHHTS
T ss_pred CEEEECCC--Cc-----------------hHHHHHHHHHHHhhhhcCCCCCE-EEEecCcccCCCHHHHHHHHHHHHhcC
Confidence 34444321 12 455666 444432 1355 77776 22 2 23 777777765
Q ss_pred CcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHH-HHHHHhhccccccccccccc
Q psy17795 235 MAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIF-QNIAAVFQSKQDEFYNGNYM 313 (523)
Q Consensus 235 ~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il-~~l~~~~~~~~~e~~~~~~~ 313 (523)
+. +.+.++. + ..+..+++ +.+..+.+++.. +..-.-++|+.+.+ +.+... . ..++||+
T Consensus 135 --a~--i~~~~~~--d----~i~~~~~~-~~v~~~~~r~~l----~~~qtpq~f~~~~L~~a~~~~-~-~~~~~~~---- 193 (246)
T 3f1c_A 135 --AV--DTVIEAL--D----TIVESSNH-EVITDIPVRDHM----YQGQTPQSFNMKKVFNHYQNL-T-PEKKQIL---- 193 (246)
T ss_dssp --EE--EEEEECS--S----CEEECSSS-SBCCBCCCGGGE----EEEEEEEEEEHHHHHHHHHTS-C-HHHHHHC----
T ss_pred --CE--EEEEecc--c----eEEEecCC-CeEEEecChHHh----hhhcCCceeEHHHHHHHHHHH-H-HcCCCcc----
Confidence 43 3344442 1 23333333 666666665431 11224568887754 444332 1 1235554
Q ss_pred ccCCCCCcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHHHhh
Q psy17795 314 VNGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHYLQL 368 (523)
Q Consensus 314 ~~~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~l~~ 368 (523)
+|.+..+...| ++..+..+.+|.+|++++||..++..+..+
T Consensus 194 --------------TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~ 235 (246)
T 3f1c_A 194 --------------TDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQER 235 (246)
T ss_dssp --------------CCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHH
T ss_pred --------------CcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhcc
Confidence 46666666666 489999999999999999999998876644
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=169.14 Aligned_cols=118 Identities=17% Similarity=0.160 Sum_probs=91.2
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCC
Q psy17795 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKA 467 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~ 467 (523)
...|++++.|++++.+.+++.||++|.|+++|.|++++||++|.|+++|+|.+++||++|.|++++.|.+
T Consensus 273 ~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~g---------- 342 (496)
T 3c8v_A 273 GAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIIN---------- 342 (496)
T ss_dssp ---CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEES----------
T ss_pred CcccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcC----------
Confidence 4556777777777777777888888888888888888888888888888888888888888888888864
Q ss_pred ceecCCCCeecCCCeecCC---cEEeCCCCEECCCcEEe---CeEEcCCcEeCCC
Q psy17795 468 FAKMDNPPLFNSNGKLNPS---ITILGDGVTVPGELIVL---NSIVLPYKELTRS 516 (523)
Q Consensus 468 ~v~I~~~~~ig~~~~i~~g---~~iIG~~~~Ig~~~~i~---~~~v~~~~~i~~~ 516 (523)
++||++++||+++.|.++ .++||++|+||++++|. +..|+|++.+...
T Consensus 343 -v~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~v~G~ 396 (496)
T 3c8v_A 343 -AHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLVWGY 396 (496)
T ss_dssp -EEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEEECSE
T ss_pred -ceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCEEEEE
Confidence 678888888888887776 24568888888888886 6777777777643
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=146.85 Aligned_cols=203 Identities=10% Similarity=0.060 Sum_probs=127.5
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|++.+|||||| .|+||+ ||+|+|++|+|||+|+++.+.+...+++|+|++++ +.+.+++.. ++.++
T Consensus 3 m~~~aiIlA~G--~g~R~~------~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~ 68 (228)
T 1ezi_A 3 KQNIAVILARQ--NSKGLP------LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKN----FGVEV 68 (228)
T ss_dssp CEEEEEEECCS--SCSSST------TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHHH----TTCEE
T ss_pred CceEEEEecCC--CCCCCC------CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHHH----cCCEE
Confidence 45669999999 999998 79999999999999999999986238999999964 456666654 45555
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cch--HH--HHHHHHhcCCcceEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IRS--DV--VILMHSLYSMAILVTV 241 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~~--D~--l~~~h~~~~~~~~~tv 241 (523)
+..+. .+. .+..| ++++++ .+++....+. +++++ ++. ++ +++.+.+.+ +++++
T Consensus 69 -~~~~~-~~~----------~~~~g--~~~sv~~~l~~~~~~~d~-vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~~~~ 131 (228)
T 1ezi_A 69 -VLRPA-ELA----------SDTAS--SISGVIHALETIGSNSGT-VTLLQPTSPLRTGAHIREAFSLFDEKI--KGSVV 131 (228)
T ss_dssp -EECCC-----------------CH--HHHHHHHHHHHHTCCSEE-EEECCTTCTTCCHHHHHHHHTTCCTTT--CCCEE
T ss_pred -EeCch-HHc----------CCCCC--hHHHHHHHHHHhCCCCCE-EEEEcCCCCcCCHHHHHHHHHHHHhcC--CCEEE
Confidence 33322 111 01122 678887 5555322355 77766 221 22 444444444 56777
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEee-c---C--CC-cccceeeeeEEEeeHHHHHHHHHhhcccccccccccccc
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVE-K---P--ST-FVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMV 314 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~e-k---p--~~-~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~ 314 (523)
.+.+... .| ++....|++ |++..|.+ + + +. ......++|+|+++++.+....+
T Consensus 132 ~~~~~~~-~p--~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~---------------- 191 (228)
T 1ezi_A 132 SACPMEH-HP--LKTLLQINN-GEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANNC---------------- 191 (228)
T ss_dssp EEEECSS-CT--TSCEEECC---CEEESSCHHHHTCCGGGSCCEEEEEEEEEEEEHHHHHHHTS----------------
T ss_pred EEEecCC-Cc--ceeeEEcCC-CcEeeccccccccCCcccCchhheeeeEEEEEeHHHHhhCCc----------------
Confidence 7776642 13 333334665 88988877 2 1 11 12345678999999876543100
Q ss_pred cCCCCCcccccchhhhhhhhhcCCcEEEEEcc-hhHhhhccchhhhhccHHH
Q psy17795 315 NGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTS-KWWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 315 ~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~-g~w~dIgt~~dyl~an~~~ 365 (523)
+ . ..++.++..+ .+|.+|+|++||..+...+
T Consensus 192 ---------------~----~-g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l 223 (228)
T 1ezi_A 192 ---------------F----F-IAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (228)
T ss_dssp ---------------S----C-CSSCEEEECCTGGGCCCCSHHHHHHHHHHH
T ss_pred ---------------c----c-CCceEEEEeCcccccCCCCHHHHHHHHHHH
Confidence 0 0 2345666654 6899999999998876543
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-15 Score=148.72 Aligned_cols=75 Identities=24% Similarity=0.335 Sum_probs=51.9
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee---------------eEECCCCEECCCCEEe-ceEEC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE---------------SIILQGASIGNHSLVL-NSIVG 444 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~---------------s~Ig~~~~Ig~~~~I~-~~iIg 444 (523)
+++.|++++.|++++.|+++++|++++.||++|.|+++|+|+. ++||++|.|+++++|. +++||
T Consensus 13 ~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~Ig 92 (273)
T 3fs8_A 13 EGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTIIG 92 (273)
T ss_dssp TTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCEEC
T ss_pred CCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCEEC
Confidence 4666777777777777777777777777777777777777754 6777777777777774 55555
Q ss_pred CCCEECCCcEE
Q psy17795 445 RNSKVGNWSRV 455 (523)
Q Consensus 445 ~~~~Ig~~~~i 455 (523)
+++.|++++.|
T Consensus 93 ~~~~Ig~~~~I 103 (273)
T 3fs8_A 93 DNFQTGHKVTI 103 (273)
T ss_dssp TTCEECSSCEE
T ss_pred CCCEECCceEE
Confidence 55555544444
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=139.73 Aligned_cols=116 Identities=15% Similarity=0.162 Sum_probs=101.2
Q ss_pred ecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEc
Q psy17795 386 IGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL-----NSIVGRNSKVGNWSRVE 456 (523)
Q Consensus 386 ~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~-----~~iIg~~~~Ig~~~~i~ 456 (523)
.+.+.|++++.|++++.|.+++.||++|.|++++.|.. ++||++|.|+++|.|. +++||++|.|++++.|.
T Consensus 10 ~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~ 89 (173)
T 1xhd_A 10 EKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILH 89 (173)
T ss_dssp TBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEE
T ss_pred CCCCEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEe
Confidence 45567888888888888888899999999999999865 8999999999999998 79999999999999997
Q ss_pred CCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe-CeEEcCCcEe
Q psy17795 457 GTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL-NSIVLPYKEL 513 (523)
Q Consensus 457 ~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~-~~~v~~~~~i 513 (523)
+ +.|+++++||.++.|.++ ++||++|+|+++++|. +..|.+++.+
T Consensus 90 ~-----------~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~Ig~~s~V~~~~~i~~~~vv 135 (173)
T 1xhd_A 90 S-----------CHIKKDALIGMGSIILDG-AEIGEGAFIGAGSLVSQGKKIPPNTLA 135 (173)
T ss_dssp S-----------CEECTTCEECTTCEECTT-CEECTTCEECTTCEECTTCEECTTEEE
T ss_pred C-----------CEECCCCEEcCCCEEcCC-CEECCCCEECCCCEECCCcEeCCCCEE
Confidence 5 578999999999999999 7789999999999994 5667666665
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-15 Score=147.16 Aligned_cols=137 Identities=11% Similarity=0.165 Sum_probs=106.2
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEE--------------eeeEECCCCEECCCCEEec------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI--------------KESIILQGASIGNHSLVLN------ 440 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I--------------~~s~Ig~~~~Ig~~~~I~~------ 440 (523)
+.+.|.+++.|++++.|++++.|.+++.||++|.|++++.| ..+.||++|.|+++++|..
T Consensus 27 ~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ 106 (266)
T 3r0s_A 27 AYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGD 106 (266)
T ss_dssp TTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTTTT
T ss_pred CCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCcccCC
Confidence 56667777777788888888888888999999999999999 4799999999999999973
Q ss_pred --eEECCCCEECCCcEEcC-CCCCC------CC-CCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCC
Q psy17795 441 --SIVGRNSKVGNWSRVEG-TPCDP------NP-NKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPY 510 (523)
Q Consensus 441 --~iIg~~~~Ig~~~~i~~-~~~~~------~~-~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~ 510 (523)
++||++|.|++++.|.. ..++. +. -.++++||++++||.++.|.++ +.||++++|+++++|... |.|+
T Consensus 107 ~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~-v~Ig~~a~Vg~~s~V~~d-vp~~ 184 (266)
T 3r0s_A 107 GFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQF-VKVGEGCMIAGASALSQD-IVPF 184 (266)
T ss_dssp SEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECSSCBBCSC-BCTT
T ss_pred ccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCC-cEECCCCEEccCCeEecc-cCCC
Confidence 88888888888877732 22221 11 2256899999999999999999 677999999999999544 4555
Q ss_pred cEeCCCCCCc
Q psy17795 511 KELTRSFKNE 520 (523)
Q Consensus 511 ~~i~~~~~~~ 520 (523)
..+ .+.|+.
T Consensus 185 ~~~-~G~Pa~ 193 (266)
T 3r0s_A 185 CLA-EGNRAS 193 (266)
T ss_dssp EEE-EEBTEE
T ss_pred eEE-eccCcE
Confidence 554 355644
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=145.69 Aligned_cols=211 Identities=14% Similarity=0.133 Sum_probs=126.3
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCee
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~ 170 (523)
|+.|.+|||||| .|+||+. ..||+|+|++|+|||+|+++.+.+.+++++|+|++++..+++.+++.. .++.+
T Consensus 2 ~~~~~aiIlAaG--~g~R~~~---~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~---~~~~~ 73 (228)
T 2yc3_A 2 EKSVSVILLAGG--QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEE---SIDVD 73 (228)
T ss_dssp TTCEEEEEECCC--CC----------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTT---TSSSE
T ss_pred CcceEEEEECCc--cccccCC---CCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHH---hCCCc
Confidence 456889999999 9999984 679999999999999999999998658999999999876666655543 34555
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cc-h-HH--HHHHHHhcCCcceEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IR-S-DV--VILMHSLYSMAILVT 240 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~-~-D~--l~~~h~~~~~~~~~t 240 (523)
+.++.+. .| ..++++ .+++....+. +++++ ++ . ++ +++.|.+.+ + +
T Consensus 74 v~~~~~~--~~-----------------~~~sv~~al~~~~~~~~~-vl~~d~d~P~~~~~~i~~l~~~~~~~~--~--~ 129 (228)
T 2yc3_A 74 LSFAIPG--KE-----------------RQDSVYSGLQEIDVNSEL-VCIHDSARPLVNTEDVEKVLKDGSAVG--A--A 129 (228)
T ss_dssp EEEECCC--SS-----------------HHHHHHHHHTTSCTTCSE-EEEEETTCTTCCHHHHHHHHHHHHHHS--E--E
T ss_pred EEEECCC--CC-----------------HHHHHHHHHHhhccCCCE-EEEecCCCccCCHHHHHHHHHHHHhcC--c--e
Confidence 6665431 23 667777 5566432344 66655 22 1 23 667776544 3 4
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHH-HHHHHhhcccccccccccccccCCCC
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIF-QNIAAVFQSKQDEFYNGNYMVNGKDT 319 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il-~~l~~~~~~~~~e~~~~~~~~~~~~~ 319 (523)
+++.+..+ +....|++ +.+.++.+++ ...... ..|+|+.+.+ +.+.+... +++|+
T Consensus 130 i~~~~~~~------~~~~~~~~-~~v~~~~~~~---~~~~~~-~~~~f~~~~l~~~~~~~~~---~~~~~---------- 185 (228)
T 2yc3_A 130 VLGVPAKA------TIKEVNSD-SLVVKTLDRK---TLWEMQ-TPQVIKPELLKKGFELVKS---EGLEV---------- 185 (228)
T ss_dssp EEEEECCS------CCCCBCTT-SCBCCCCSCC---CCEEEE-EEEEECHHHHHHHHHHHHH---HTCCC----------
T ss_pred EEEEeccc------eEEEEcCC-CceEEecCcc---ceEEEe-CCcEEEHHHHHHHHHHHHh---cCCCc----------
Confidence 44444421 11112433 4555443322 122333 3899998744 44433211 12443
Q ss_pred CcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHH
Q psy17795 320 DFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~ 365 (523)
++.+..+.+.| ++..+..+..|.+|+|++||..+...+
T Consensus 186 --------~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l 224 (228)
T 2yc3_A 186 --------TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (228)
T ss_dssp --------CSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred --------ccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHH
Confidence 34444444444 466666667899999999998876544
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-17 Score=155.05 Aligned_cols=194 Identities=11% Similarity=0.022 Sum_probs=128.8
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|.|++|||||| . |||.+.+...||+|+|++|+|||+|+++.+.+. ++ +|+|++.. +.+.+++ + +
T Consensus 1 m~~~~vIlAaG--~-tRl~~r~~~~~K~l~~i~g~pll~~~l~~l~~~-~~-~ivvv~~~--~~i~~~~-------~--~ 64 (232)
T 2dpw_A 1 MRPSAIVLAGG--K-EAWAERFGVGSKALVPYRGRPMVEWVLEALYAA-GL-SPVYVGEN--PGLVPAP-------A--L 64 (232)
T ss_dssp CCCEEEEECCC--B-CSGGGTTTCSBGGGSEETTEETHHHHHHHHHHT-TC-EEEEESCC--SSCSSCC-------S--E
T ss_pred CceeEEEECCC--C-CccccccCCCCceeeEECCEEHHHHHHHHHHhc-CC-EEEEEeCh--HHHhhhc-------C--e
Confidence 45789999999 8 777766556899999999999999999999986 77 88887653 3332222 2 3
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cch--HH--HHHHHHhcCCcceEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IRS--DV--VILMHSLYSMAILVTV 241 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~~--D~--l~~~h~~~~~~~~~tv 241 (523)
.+ ....| ++++++ .+++. +. +++++ ++. ++ +++ | ..+ +++++
T Consensus 65 ~~---~~~~g-----------------~~~~i~~a~~~~~---~~-~lv~~~D~P~~~~~~i~~l~~-~-~~~--~~~~~ 116 (232)
T 2dpw_A 65 TL---PDRGG-----------------LLENLEQALEHVE---GR-VLVATGDIPHLTEEAVRFVLD-K-APE--AALVY 116 (232)
T ss_dssp EE---CCCSS-----------------HHHHHHHHHHTCC---SE-EEEEETTCTTCCHHHHHHHHH-H-CCS--CSEEE
T ss_pred Ee---cCCCC-----------------HHHHHHHHHHHcC---CC-EEEEeCCcccCCHHHHHHHHh-c-CCC--CCEEE
Confidence 33 33455 889998 55554 56 88877 222 22 555 4 444 66777
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhccc------------------
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSK------------------ 303 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~------------------ 303 (523)
.+.+... ....|+.+ . .++.++.||| .+++|+|+|+++++..+.+.....
T Consensus 117 ~~~~~~~-~~~~~~~~----~-~~v~~~~ek~------~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 184 (232)
T 2dpw_A 117 PIVPKEA-VEARFPRT----K-RTYARLREGT------FTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDV 184 (232)
T ss_dssp EEEEHHH-HHHHCTTC----C-CCCEEETTEE------EEECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHHHHHHCHHH
T ss_pred EEeeccc-hhhhCCCc----c-eeEEEEecCc------eeeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHHHHHHCHHH
Confidence 7665321 11345422 1 4678888875 388999999999876554422211
Q ss_pred -----ccccccccccccCCCCCcccccchhhhhhhhhcC--CcEEEEEc--chhHhhhccchhhh
Q psy17795 304 -----QDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGS--GKAYVYQT--SKWWSQLKSAGSAI 359 (523)
Q Consensus 304 -----~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~--g~v~~~~~--~g~w~dIgt~~dyl 359 (523)
.+|+++ +++++.+... ..+.++.. .+.|.|++||+||.
T Consensus 185 l~~~~~ge~~l------------------~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 185 LLKLLLGRLSL------------------AEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp HHHHHHTCCCH------------------HHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred HHHHHhccCCH------------------HHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 133433 5777665532 35777776 57899999999973
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-15 Score=151.15 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEc
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVE 456 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~ 456 (523)
+++.|++++.|++++.|++++.|++++.||++|+|+++|.|+ ++.||++|.|+++++|. +++||++|.|+++++|+
T Consensus 107 p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~Ig 184 (357)
T 4e79_A 107 STARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVIG 184 (357)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEES
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEecccEEEeEeeccCCeEEC
Confidence 566666666666666666666666666666666666666665 46666666666666663 56666666666666664
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-15 Score=149.86 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=50.0
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-----ceEECCCCEECCCcE
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-----NSIVGRNSKVGNWSR 454 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-----~~iIg~~~~Ig~~~~ 454 (523)
|++.|++++.|++++.|+++++|++++.||++|.|+++++|. ++.||++|.|++++.|. +++||+++.|++++.
T Consensus 12 p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~ 91 (305)
T 3t57_A 12 PSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAV 91 (305)
T ss_dssp TTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCE
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccE
Confidence 466677777777777777777777777777777777777764 56666666666666665 355666665555555
Q ss_pred E
Q psy17795 455 V 455 (523)
Q Consensus 455 i 455 (523)
|
T Consensus 92 I 92 (305)
T 3t57_A 92 V 92 (305)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-15 Score=147.45 Aligned_cols=138 Identities=10% Similarity=0.172 Sum_probs=106.3
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-------------eeEECCCCEECCCCEEec-------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-------------ESIILQGASIGNHSLVLN------- 440 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-------------~s~Ig~~~~Ig~~~~I~~------- 440 (523)
+.+.|.+++.|++++.|++++.|++++.||++|.|++++.|+ +++||++|.|+++|+|..
T Consensus 45 ~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~g~~~~~~ 124 (283)
T 4eqy_A 45 PYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTGTVQDAG 124 (283)
T ss_dssp TTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSSCEECTTEEEECCCTTTTS
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEECCCcccCcceeEccceecCCC
Confidence 456667777777777777888887888899999999999993 689999999999999974
Q ss_pred -eEECCCCEECCCcEEc-CCCCCC------CC-CCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCc
Q psy17795 441 -SIVGRNSKVGNWSRVE-GTPCDP------NP-NKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYK 511 (523)
Q Consensus 441 -~iIg~~~~Ig~~~~i~-~~~~~~------~~-~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~ 511 (523)
++||++|.|++++.|. +..++. +. ..++++||++++||.++.|.++ +.||++++|+++++|... |.|+.
T Consensus 125 ~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~-v~Ig~~~vvg~~s~V~~d-vp~~~ 202 (283)
T 4eqy_A 125 VTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQY-VRIGAHSMLGGASALVQD-IPPFV 202 (283)
T ss_dssp EEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECTTCEECSB-BCTTE
T ss_pred ceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCC-eEECCCcEECCCCeEecc-cCCCc
Confidence 8888888888777773 222222 11 1356899999999999999999 777999999999999654 45555
Q ss_pred EeCCCCCCcc
Q psy17795 512 ELTRSFKNEI 521 (523)
Q Consensus 512 ~i~~~~~~~~ 521 (523)
.+ .+.|+..
T Consensus 203 ~~-~G~pa~~ 211 (283)
T 4eqy_A 203 IA-AGNKAEP 211 (283)
T ss_dssp EE-ETBTTEE
T ss_pred EE-eccCcEE
Confidence 54 4566553
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=140.75 Aligned_cols=121 Identities=18% Similarity=0.140 Sum_probs=101.3
Q ss_pred cCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEE------------eceEECCCCEEC
Q psy17795 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLV------------LNSIVGRNSKVG 450 (523)
Q Consensus 387 ~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I------------~~~iIg~~~~Ig 450 (523)
....+++++.|++++.|++++.||++|.|++++.|.. +.||++|.|+++|.| .+++||++|.|+
T Consensus 14 ~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig 93 (187)
T 3r3r_A 14 LFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVG 93 (187)
T ss_dssp BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEEC
T ss_pred cCcccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEEC
Confidence 4466777788888888878888888888888888863 599999999999999 689999999999
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe-CeEEcCCcEeCCCCCCc
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL-NSIVLPYKELTRSFKNE 520 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~-~~~v~~~~~i~~~~~~~ 520 (523)
+++.|.+ ++||++++||++++|.++ ++||++|+|+++++|. +..|.+++.+. +.|+.
T Consensus 94 ~~~~i~~-----------~~Ig~~~~Ig~~~~I~~~-~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~-G~pa~ 151 (187)
T 3r3r_A 94 HKVMLHG-----------CTIGNRVLVGMGSIVLDG-AIIEDDVMIGAGSLVPQHKRLESGYLYL-GSPVK 151 (187)
T ss_dssp TTCEEES-----------CEECSSEEECTTCEECTT-CEECSSEEECTTCEECTTCEECTTEEEE-TTTTE
T ss_pred CCCEEeC-----------cEECCCCEECCCCEECCC-CEECCCCEECCCCEECCCcCcCCCcEEE-ecCCe
Confidence 9999975 689999999999999999 7789999999999994 46777666653 45544
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-15 Score=144.75 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=105.1
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEE--------------eeeEECCCCEECCCCEEe-------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI--------------KESIILQGASIGNHSLVL------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I--------------~~s~Ig~~~~Ig~~~~I~------- 439 (523)
+.+.|.+++.|++++.|++++.|.+++.||++|.|++++.| ..+.||++|.|+++|+|.
T Consensus 23 ~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ 102 (259)
T 3hsq_A 23 PYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDS 102 (259)
T ss_dssp TTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTB
T ss_pred CCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCC
Confidence 56677778888888888888888888999999999999999 348999999999999997
Q ss_pred ceEECCCCEECCCcEEcCCC-CC------CC-CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCc
Q psy17795 440 NSIVGRNSKVGNWSRVEGTP-CD------PN-PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYK 511 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~-~~------~~-~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~ 511 (523)
.++||+++.|++++.|.... ++ .+ ...++++||++++||.++.|.++ +.||++|+|+++++|... |.|+.
T Consensus 103 ~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~-v~Ig~~~~Vg~~s~V~~d-vp~~~ 180 (259)
T 3hsq_A 103 PTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQF-CFVGDYSMVAGLAKVVQD-VPPYS 180 (259)
T ss_dssp CEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTT-CEECTTCEECSSEEECSB-BCTTE
T ss_pred cEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCC-CEECCCCEECCCCEEccc-CCCCc
Confidence 67777776666666553211 11 11 12256899999999999999999 677999999999999654 45555
Q ss_pred EeCCCCCCcc
Q psy17795 512 ELTRSFKNEI 521 (523)
Q Consensus 512 ~i~~~~~~~~ 521 (523)
.+ .+.|+..
T Consensus 181 ~~-~G~pa~~ 189 (259)
T 3hsq_A 181 TV-DGNPSTV 189 (259)
T ss_dssp EE-ETTTTEE
T ss_pred EE-eccCcEE
Confidence 54 4667654
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=156.16 Aligned_cols=127 Identities=20% Similarity=0.279 Sum_probs=102.9
Q ss_pred eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCC
Q psy17795 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDP 462 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~ 462 (523)
.+.+++.|++++.|++++.|++++.||++|.|++++.|+ +++||++|.||++|.|.+++|++++.|++++.|.+
T Consensus 240 ~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~----- 314 (401)
T 2ggo_A 240 KIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGD----- 314 (401)
T ss_dssp EEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEES-----
T ss_pred EEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcc-----
Confidence 456777888888888888888899999999999999996 69999999999999999999999999999999965
Q ss_pred CCCCCceecCCCCeecCCCeec------------------------CCcEEeCCCCEECCCcEE-------eCeEEcCCc
Q psy17795 463 NPNKAFAKMDNPPLFNSNGKLN------------------------PSITILGDGVTVPGELIV-------LNSIVLPYK 511 (523)
Q Consensus 463 ~~~~~~v~I~~~~~ig~~~~i~------------------------~g~~iIG~~~~Ig~~~~i-------~~~~v~~~~ 511 (523)
+.||++++||+++.|. .+ ++||++|+||++++| .+++|++++
T Consensus 315 ------~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gs 387 (401)
T 2ggo_A 315 ------SVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLG-AFIGGHVRTGINVTILPGVKIGAYARIYPGA 387 (401)
T ss_dssp ------CEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCC-CEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred ------eEECCCcEECCCcEEcCcccCCCceeEEECCceEEecccccC-cEECCCeEECCCcEEcCCcEECCCcEECCCC
Confidence 4667777777776665 23 566777777776666 456777888
Q ss_pred EeCCCCCCccc
Q psy17795 512 ELTRSFKNEIL 522 (523)
Q Consensus 512 ~i~~~~~~~~i 522 (523)
.|++++|+..+
T Consensus 388 vv~~~vp~~~~ 398 (401)
T 2ggo_A 388 VVNRDVGYGEF 398 (401)
T ss_dssp EECSCBCTTCE
T ss_pred eEccccCCCcE
Confidence 88888885543
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-15 Score=150.85 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=39.2
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEE-eeeEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I-~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i 455 (523)
+++.|++++.|++++.|+++++|++++.||++|.|+++|.| .++.||++|.|+++++|. +++||++|.|+++++|
T Consensus 102 ~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I 178 (341)
T 3eh0_A 102 PSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVV 178 (341)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTCEE
T ss_pred CCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECCCCEECCccEEcCCcEE
Confidence 45555555555555555555555555555555555555555 234455555554444442 4444444444444444
|
| >1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-16 Score=149.11 Aligned_cols=63 Identities=32% Similarity=0.584 Sum_probs=56.9
Q ss_pred ccccccceeeec-----cCCCccEEEEEEEecCCeEEEEEecCceEEEEEcccchhhhhHHHhhhccc
Q psy17795 2 KYDHKNGYLKLK-----MTDDNARYSMKYDHKNGYLKLKMTDDNVCLIYKTEMSQDLKKIDNAKKHVE 64 (523)
Q Consensus 2 ~~~~~~~~~~~~-----~~p~~~r~~~k~~~~~~~~~~k~t~~~~~~~~~~~~~~~~~~~e~~~~~~~ 64 (523)
-+.+|+-|++.+ .+|.+|||++||+|++|+|+||||||.+||||+|++++|++|||+||..|+
T Consensus 149 y~~sw~eF~~~s~~Ly~a~P~~tRy~~KY~~~~g~LvLKvTD~~~cLkYrT~ka~dl~rle~l~~~lm 216 (232)
T 1914_A 149 QFQTWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEKFHSQLM 216 (232)
T ss_dssp -CCSHHHHHHHHHHHHHHCTTTCEEEEEEETTTTEEEEEEECSSSEEEEEECBGGGHHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHHHHhCCCceEEEEEEEcCCceEEEEEeeCCeEEEEECchHHHHHHHHHHHHHHH
Confidence 368899998865 579999999999999999999999999999999999999999999886643
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=141.77 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=96.9
Q ss_pred cEECCCCEECCCCEECC--CcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe----ceEECCCCEECCCcEEcCCCCC
Q psy17795 389 VYIHSSASVHPTAIVGP--NVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL----NSIVGRNSKVGNWSRVEGTPCD 461 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~--~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~----~~iIg~~~~Ig~~~~i~~~~~~ 461 (523)
..+++++.|++++.|.. ++.||++|.|+++|.|. ++.||++|.|+++|.|. +++||++|.|+++|.|......
T Consensus 33 ~~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~ 112 (205)
T 3vbi_A 33 LSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDD 112 (205)
T ss_dssp SEECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECC
T ss_pred eEECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCC
Confidence 44555566666666655 67888888888888885 68999999999999994 4999999999999999532211
Q ss_pred C---------------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCc
Q psy17795 462 P---------------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 462 ~---------------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~ 520 (523)
. ......++||++|+||++++|.+| +.||++|+||++++|... +.++..+ .+.|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g-v~Ig~~~~Ig~gsvV~~~-v~~~~v~-~G~Pa~ 183 (205)
T 3vbi_A 113 FSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPN-VVIGEGVAVGAMSMVKES-LDDWYIY-VGVPVR 183 (205)
T ss_dssp CSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSS-CEECTTCEECTTCEECSC-BCTTEEE-ETTTTE
T ss_pred cccccccCcccccccceeccCCEEECCCCEECCCCEEcCC-CEECCCCEEcCCCEECCc-cCCCeEE-EccCCE
Confidence 1 011356899999999999999999 778999999999999544 3444433 345544
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=143.75 Aligned_cols=208 Identities=13% Similarity=0.097 Sum_probs=121.5
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh-HHHHHHHHhhhhccCe---
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS-ADLQKFVLDMVQEYKI--- 169 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~-~~i~~~l~~~~~~~~~--- 169 (523)
|.+|||||| .|+||++ ..+||+|+|++|+|||+|+++++.+++++++|+|++++.. +.+.+++.+ +++
T Consensus 3 ~~~iIlA~G--~g~R~~~--~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~----~~~~~~ 74 (236)
T 2vsh_A 3 IYAGILAGG--TGTRMGI--SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDK----YLPLYK 74 (236)
T ss_dssp EEEEEEEC---------------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHH----HCGGGG
T ss_pred eEEEEeCCc--cccccCC--CCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHh----cccccc
Confidence 579999999 9999998 6789999999999999999999998646999999999865 667777654 231
Q ss_pred -eEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc---c--CCcceEEEEc----cc-h-HH--HHHHHHhc
Q psy17795 170 -NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH---W--VQEAVYFTLE----IR-S-DV--VILMHSLY 233 (523)
Q Consensus 170 -~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~---~--~~d~~~Lvl~----i~-~-D~--l~~~h~~~ 233 (523)
.+.+... ..| .+++++ ..++. . ..+. +++++ ++ . ++ +++.|.+.
T Consensus 75 ~~~~~~~~--~~~-----------------~~~~i~~~l~~~~~~~~~~~~~~-vlv~~~D~P~~~~~~i~~l~~~~~~~ 134 (236)
T 2vsh_A 75 ERIIITKG--GAD-----------------RNTSIKNIIEAIDAYRPLTPEDI-VVTHDSVRPFITLRMIQDNIQLAQNH 134 (236)
T ss_dssp GGEEEEEC--CSS-----------------HHHHHHHHHHHHHHHSCCCTTCE-EEEEETTCTTCCHHHHHHHHHHHHHS
T ss_pred CceEEECC--CCc-----------------hHHHHHHHHHHHHhhccCCCCCE-EEEecCCcccCCHHHHHHHHHHHHhc
Confidence 1111111 012 566666 44442 1 2355 77765 22 2 33 67777765
Q ss_pred CCcceEEEEEEeeCCCCCcceeEEEEcCCCC-cEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccc
Q psy17795 234 SMAILVTVMATEATRQQSVYYGCIVRKQQTS-EISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNY 312 (523)
Q Consensus 234 ~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~-~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~ 312 (523)
+ + ++++.+.. ++.. .+++ | ++..+.+++.. ......|+|+++.+..+.+... ...++
T Consensus 135 ~--~--~~~~~~~~--~~~~-----~~~~-g~~~~~~~~~~~~----~~~~~p~~f~~~~l~~~~~~~~--~~g~~---- 192 (236)
T 2vsh_A 135 D--A--VDTVVEAV--DTIV-----ESTN-GQFITDIPNRAHL----YQGQTPQTFRCKDFMDLYGSLS--DEEKE---- 192 (236)
T ss_dssp S--E--EEEEEECC--SCEE-----ECSS-SSBCCBCCCGGGE----EEEEEEEEEEHHHHHHHHHTCC--HHHHH----
T ss_pred C--c--EEEEEecc--ccEE-----EeCC-CCeeeeecChHHh----eeecCCcEecHHHHHHHHHHHH--hcCCC----
Confidence 5 4 34444542 2222 2344 7 88888776421 1112478999887654322110 01111
Q ss_pred cccCCCCCcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHH
Q psy17795 313 MVNGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRH 364 (523)
Q Consensus 313 ~~~~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~ 364 (523)
++ ++.++.+...+ ++..+..+++|.+|+|++||..++..
T Consensus 193 ------------~~-~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~ 232 (236)
T 2vsh_A 193 ------------IL-TDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSM 232 (236)
T ss_dssp ------------HC-CSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred ------------cC-CCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHH
Confidence 01 23334444444 58888888899999999999887654
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-15 Score=144.48 Aligned_cols=137 Identities=17% Similarity=0.228 Sum_probs=85.3
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-------------ceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-------------NSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~~iIg~~ 446 (523)
+++.|++++.|++++.|++++.|++++.||++|.|++++.|. ++.||++|.|+++++|. +++||++
T Consensus 10 p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~ 89 (262)
T 2qia_A 10 PTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDR 89 (262)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSS
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCC
Confidence 456666777777777777777777777777777777777775 57788888888888885 5777777
Q ss_pred CEECCCcEEcCCCCCCCCCCCceecCCCCe------------------ecCCCeecCCcEEeCCCCEECCCcEE------
Q psy17795 447 SKVGNWSRVEGTPCDPNPNKAFAKMDNPPL------------------FNSNGKLNPSITILGDGVTVPGELIV------ 502 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~------------------ig~~~~i~~g~~iIG~~~~Ig~~~~i------ 502 (523)
+.|++++.|....... ...+.||++++ ++.++.+..+ ++||++|+||++++|
T Consensus 90 ~~Ig~~~~I~~~~~~~---~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~-v~Ig~~~~Ig~~~~I~~~v~I 165 (262)
T 2qia_A 90 NRIRESVTIHRGTVQG---GGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGH-VSVDDFAIIGGMTAVHQFCII 165 (262)
T ss_dssp CEECTTCEEECCCTTT---TSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTCEECTTCEE
T ss_pred ceeCCCCEEcCCccCC---CCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCC-cEECCCcEEccCCEECCCCEE
Confidence 7777777775432110 01233444333 3333333333 444555555555555
Q ss_pred -eCeEEcCCcEeCCCCCCcc
Q psy17795 503 -LNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 503 -~~~~v~~~~~i~~~~~~~~ 521 (523)
.+++|++++.|.+++|+..
T Consensus 166 g~~~~ig~~s~V~~~v~~~~ 185 (262)
T 2qia_A 166 GAHVMVGGCSGVAQDVPPYV 185 (262)
T ss_dssp CTTCEECSSCEECSBBCTTE
T ss_pred CCCCEEccCCEECCcCCCCe
Confidence 2455666666666666443
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-15 Score=137.25 Aligned_cols=114 Identities=19% Similarity=0.274 Sum_probs=95.8
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEcCC
Q psy17795 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL-----NSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~-----~~iIg~~~~Ig~~~~i~~~ 458 (523)
...|++++.|++++.|.+++.||++|.|++++.|.. +.||++|.|+++|.|. +++||++|.|++++.|.+
T Consensus 10 ~~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~- 88 (173)
T 1v3w_A 10 KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHG- 88 (173)
T ss_dssp CCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEES-
T ss_pred CCEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECC-
Confidence 456777777777777777888888888888888864 8999999999999997 589999999999999965
Q ss_pred CCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEe
Q psy17795 459 PCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKEL 513 (523)
Q Consensus 459 ~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i 513 (523)
+.|+++++||.++.|.++ ++||++|+||++++| .+..|.+++.+
T Consensus 89 ----------~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~Ig~~s~V~~~~~i~~~~~v 133 (173)
T 1v3w_A 89 ----------AKVGNYVIIGISSVILDG-AKIGDHVIIGAGAVVPPNKEIPDYSLV 133 (173)
T ss_dssp ----------CEECSSEEECTTCEECTT-CEECSSEEECTTCEECTTCEECTTEEE
T ss_pred ----------CEECCCCEECCCCEEeCC-CEECCCCEECCCCEECCCcEeCCCcEE
Confidence 578999999999999998 777999999999998 45667766666
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-15 Score=140.76 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=94.1
Q ss_pred cCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-----eEECCCCEECCCCEEec---------------eEECCC
Q psy17795 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVLN---------------SIVGRN 446 (523)
Q Consensus 387 ~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~~---------------~iIg~~ 446 (523)
....|++++.|++++.|++++.||++|.|++++.|.. ++||++|.|+++|.|.. ++||++
T Consensus 38 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~ 117 (213)
T 3kwd_A 38 AEPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDN 117 (213)
T ss_dssp CCCEECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTT
T ss_pred CCCcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCC
Confidence 3456777777777787778888888888888888843 78999999999999974 888999
Q ss_pred CEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCC
Q psy17795 447 SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTR 515 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~ 515 (523)
|.|++++.|.+ .++||++++||+++.|.. ++||++|+||++++|.+++|++++.|..
T Consensus 118 v~Ig~~~~I~~----------~v~Ig~~v~IG~~a~I~~--~~Ig~~~~Igags~V~~~~i~~~~~v~~ 174 (213)
T 3kwd_A 118 VSITHMALIHG----------PAYIGDGCFIGFRSTVFN--ARVGAGCVVMMHVLIQDVEIPPGKYVPS 174 (213)
T ss_dssp CEECTTCEEEE----------EEEECTTCEECTTCEEEE--EEECTTCEECSSCEEESCEECTTBEECT
T ss_pred cEECCCcEEcC----------CCEECCCCEECCCCEEeC--cEECCCCEEcCCCEECCcEeCCCCEECC
Confidence 99999988875 488999999999998874 7889999999999996555555555443
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=143.34 Aligned_cols=137 Identities=13% Similarity=0.109 Sum_probs=107.0
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEE-------------eeeEECCCCEECCCCEEe--------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-------------KESIILQGASIGNHSLVL-------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I-------------~~s~Ig~~~~Ig~~~~I~-------- 439 (523)
+.+.|.+++.|++++.|++++.|++++.||++|.|++++.| .+++||++|.|+++|+|.
T Consensus 30 ~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~ 109 (265)
T 4e6u_A 30 PYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNA 109 (265)
T ss_dssp TTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTS
T ss_pred CCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECcccccCCC
Confidence 56677777888888888888888888999999999999999 368999999999999997
Q ss_pred ceEECCCCEECCCcEEcC-CCCCC------C-CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCc
Q psy17795 440 NSIVGRNSKVGNWSRVEG-TPCDP------N-PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYK 511 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~-~~~~~------~-~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~ 511 (523)
.++||++|.|++++.|.. ..++. + ...++++||++++||.++.|.++ +.||++++|+++++|... |.|+.
T Consensus 110 ~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~-v~Ig~~~~i~~~svV~~d-vp~~~ 187 (265)
T 4e6u_A 110 LTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQF-CKIDSYSMIGGASLILKD-VPAYV 187 (265)
T ss_dssp EEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTCEECSB-BCTTE
T ss_pred ceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCC-cEECCCCEEcCCCEEccc-CCCCe
Confidence 488888888888777732 22222 1 12356899999999999999999 677999999999999654 45555
Q ss_pred EeCCCCCCc
Q psy17795 512 ELTRSFKNE 520 (523)
Q Consensus 512 ~i~~~~~~~ 520 (523)
.+ .+.|+.
T Consensus 188 ~~-~G~pa~ 195 (265)
T 4e6u_A 188 MA-SGNPAH 195 (265)
T ss_dssp EE-EETTEE
T ss_pred EE-EccCCE
Confidence 54 355654
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=149.30 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=13.2
Q ss_pred EEeCCCCEECCCcEE-eCeEEcCCcEeCC
Q psy17795 488 TILGDGVTVPGELIV-LNSIVLPYKELTR 515 (523)
Q Consensus 488 ~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~ 515 (523)
+.||++|+||++++| .+..|+++++|..
T Consensus 281 v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a 309 (372)
T 3pmo_A 281 AKIGRHCMLAGGVGLVGHIEICDNVFVTG 309 (372)
T ss_dssp CEECSSCEECTTCEECSSCEECSSEEECT
T ss_pred CEECCCeEEeCCCEECCCCEECCCCEEee
Confidence 344555555555544 3344555555443
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=141.91 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=106.3
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-------------eeEECCCCEECCCCEEec-------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-------------ESIILQGASIGNHSLVLN------- 440 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-------------~s~Ig~~~~Ig~~~~I~~------- 440 (523)
+.+.|.+++.|++++.|++++.|++++.||++|.|++++.|+ ++.||++|.|+++|+|..
T Consensus 28 ~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~ 107 (262)
T 2qia_A 28 PFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGG 107 (262)
T ss_dssp TTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTS
T ss_pred CCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCCC
Confidence 456677777777888888888888889999999999999996 589999999999999973
Q ss_pred -eEECCCCEECCCcEEcC-CCCCC-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCc
Q psy17795 441 -SIVGRNSKVGNWSRVEG-TPCDP-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYK 511 (523)
Q Consensus 441 -~iIg~~~~Ig~~~~i~~-~~~~~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~ 511 (523)
++||+++.|++++.|.. ..++. ....++++|+++++||.++.|.++ +.||++|+|+++++|... +.|+.
T Consensus 108 ~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~-v~Ig~~~~ig~~s~V~~~-v~~~~ 185 (262)
T 2qia_A 108 LTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQF-CIIGAHVMVGGCSGVAQD-VPPYV 185 (262)
T ss_dssp EEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECSSCEECSB-BCTTE
T ss_pred cCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCC-CEECCCCEEccCCEECCc-CCCCe
Confidence 88998888888777732 22221 112356889999999999999999 677999999999999654 45665
Q ss_pred EeCCCCCCc
Q psy17795 512 ELTRSFKNE 520 (523)
Q Consensus 512 ~i~~~~~~~ 520 (523)
.+ .+.|+.
T Consensus 186 ~~-~G~pa~ 193 (262)
T 2qia_A 186 IA-QGNHAT 193 (262)
T ss_dssp EE-EEBTEE
T ss_pred EE-eccCce
Confidence 54 455544
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.6e-15 Score=139.58 Aligned_cols=206 Identities=10% Similarity=0.043 Sum_probs=129.8
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCC-ccEEEEEccCCh-HHHHHHHHhhhhccCe
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPN-LKEIIILGYYPS-ADLQKFVLDMVQEYKI 169 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g-~~~i~vv~~~~~-~~i~~~l~~~~~~~~~ 169 (523)
|+|.+|||||| .|+||+. ..||+|+|++|+|||+|+++.+.+. + +++|+|++++.. +.+.+++. +.
T Consensus 1 m~~~~vIlA~G--~g~R~~~---~~~K~l~~~~g~pli~~~l~~l~~~-~~~~~i~vv~~~~~~~~~~~~~~------~~ 68 (223)
T 2xwl_A 1 MATVAVVPAAG--SGERLRA---GRPKAFVTLGGTPLLEHALSGLRAS-GVIDRIVIAVPPALTDESKLVFG------GE 68 (223)
T ss_dssp -CEEEEEECCC--CCGGGTS---SSCGGGSEETTEEHHHHHHHHHHHH-SCCSEEEEEECGGGHHHHHHHTC------BT
T ss_pred CceEEEEECCc--cCcccCC---CCCCeeeEECCeEHHHHHHHHHhcC-CCCCeEEEEEcccHHHHHHHHhc------cC
Confidence 45789999999 9999983 6799999999999999999999986 5 899999998854 33544432 12
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cc-h-HH--HHHHHHhcCCcceE
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IR-S-DV--VILMHSLYSMAILV 239 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~-~-D~--l~~~h~~~~~~~~~ 239 (523)
++.++.+. .+ .+++++ ..++. ..+. +++++ ++ . ++ +++.+. .+ .+.
T Consensus 69 ~v~~~~~~--~~-----------------~~~~i~~al~~~~-~~~~-vlv~~~D~P~~~~~~i~~l~~~~~-~~--~~~ 124 (223)
T 2xwl_A 69 DSVIVSGG--VD-----------------RTESVALALEAAG-DAEF-VLVHDAARALTPPALIARVVAALK-EG--HSA 124 (223)
T ss_dssp TEEEEECC--SS-----------------HHHHHHHHHTTCT-TCSE-EEECCTTCTTCCHHHHHHHHHHHH-HT--CSE
T ss_pred CeEEEcCC--CC-----------------HHHHHHHHHHhcC-CCCE-EEEEcCCcccCCHHHHHHHHHHHh-hc--CCe
Confidence 34444332 12 456666 45552 2345 66665 22 1 23 666662 23 445
Q ss_pred EEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCC
Q psy17795 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDT 319 (523)
Q Consensus 240 tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~ 319 (523)
++.+.+.. ++..+ .|++ |++..+.|++.. ......++|+++.+..+.+.. . +++.
T Consensus 125 ~i~~~~~~--d~~~~----~~~~-g~~~~~~e~~~l----~~~~~p~~f~~~~l~~~~~~~---~-~~~~---------- 179 (223)
T 2xwl_A 125 VVPGLAPA--DTIKA----VDAN-GAVLGTPERAGL----RAVQTPQGFHADVLRRAYARA---T-AGGV---------- 179 (223)
T ss_dssp EEEEECCS--SCEEE----ECTT-SBEEECCCGGGE----EEECSCEEEEHHHHHHHHTTC---C-SCCC----------
T ss_pred EEEEEecc--cceEE----EcCC-CcEEeecChHHh----eeeeCCcccCHHHHHHHHHHh---h-CCCC----------
Confidence 66555543 33333 2655 899988887521 112345788887765543311 0 2222
Q ss_pred CcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 320 DFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
++....+...+ .+..+..+++|.||+|++||..+...+.
T Consensus 180 --------~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~ 219 (223)
T 2xwl_A 180 --------TDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLA 219 (223)
T ss_dssp --------CCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHH
T ss_pred --------ccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHh
Confidence 23333333333 4788888889999999999988866543
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=138.53 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=99.8
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCCEEe----eeEECCCCEECCCCEEece------------EECCCCEECC
Q psy17795 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK----ESIILQGASIGNHSLVLNS------------IVGRNSKVGN 451 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~----~s~Ig~~~~Ig~~~~I~~~------------iIg~~~~Ig~ 451 (523)
...|++++.|++++.|++++.||++|.|++++.|. .+.||++|.|++++.|..+ +||++|.|++
T Consensus 19 ~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~ 98 (189)
T 3r1w_A 19 SPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGH 98 (189)
T ss_dssp CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECT
T ss_pred CCEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECC
Confidence 35677777777788887888888999999888885 2599999999999999754 9999999999
Q ss_pred CcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCc
Q psy17795 452 WSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 452 ~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~ 520 (523)
+|.|.+ ++||++++||++++|.++ +.||++|+|+++++| .+..|.+++++. +.|+.
T Consensus 99 ~~~i~~-----------~~Ig~~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~-G~pa~ 155 (189)
T 3r1w_A 99 QAMLHG-----------CTIGNRVLIGMKSMIMDG-AIVEDEVIVAAGATVSPGKVLESGFVYM-GTPAK 155 (189)
T ss_dssp TCEEES-----------CEECSSEEECTTCEECTT-CEECSSCEECTTCEECTTCEECTTEEEE-TTTTE
T ss_pred CCEEeC-----------cEECCCcEECCCCEEcCC-CEECCCCEEccCCEECCCCEeCCCCEEE-CCccc
Confidence 999975 589999999999999999 778999999999999 456777766663 45543
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-14 Score=146.08 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=83.8
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEE-eeeEECCCCEECCCCEE--------------------ec
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLV--------------------LN 440 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I-~~s~Ig~~~~Ig~~~~I--------------------~~ 440 (523)
.+.|++++.|++++.|++++.|+.++.||++|.|+++++| +++.||++|.|+++++| .+
T Consensus 121 ~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~ 200 (341)
T 3eh0_A 121 NAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGR 200 (341)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCC
T ss_pred CcEECCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECCCCEECCccEEcCCcEECCccccccccCCccccccccCc
Confidence 3444444455555555555555555555555555555656 34677777777777776 24
Q ss_pred eEECCCCEECCCcEEcCCCC-----CC-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-e----
Q psy17795 441 SIVGRNSKVGNWSRVEGTPC-----DP-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-L---- 503 (523)
Q Consensus 441 ~iIg~~~~Ig~~~~i~~~~~-----~~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~---- 503 (523)
++||++|.||+++.|..... +. -.....+.||++++|+.++.+..+ ++||++|+||++++| .
T Consensus 201 v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~g~-v~IG~~~~Ig~~s~V~~~v~I 279 (341)
T 3eh0_A 201 VIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGS-LKIGRYCMIGGASVINGHMEI 279 (341)
T ss_dssp EEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTT-EEECTTCEECTTCEECSSEEE
T ss_pred EEECCCcEECCccEeeccccCceEeccceEECCCCEEeCCcEECCCCEECCCCEECCC-cEECCCcEEcCCCEECCCCEE
Confidence 67777777777777742211 00 001135667777777777777777 777999998888887 3
Q ss_pred --CeEEcCCcEeCCCCC
Q psy17795 504 --NSIVLPYKELTRSFK 518 (523)
Q Consensus 504 --~~~v~~~~~i~~~~~ 518 (523)
+++|+.++.|.+++|
T Consensus 280 g~~~vv~a~s~V~~~v~ 296 (341)
T 3eh0_A 280 CDKVTVTGMGMVMRPIT 296 (341)
T ss_dssp CSSEEECTTCEECSCBC
T ss_pred CCCCEEeeCCEECCCcC
Confidence 345556666666665
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-14 Score=147.19 Aligned_cols=17 Identities=12% Similarity=0.462 Sum_probs=11.5
Q ss_pred ceEECCCCEECCCcEEc
Q psy17795 440 NSIVGRNSKVGNWSRVE 456 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~ 456 (523)
+++||++|.||++++|.
T Consensus 222 ~v~IGd~v~IGa~~~I~ 238 (372)
T 3pmo_A 222 GVTIGDDVEIGANTTID 238 (372)
T ss_dssp CEEECSSCEECTTCEEE
T ss_pred CeEECCCCEECCCcEEc
Confidence 46677777777777664
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-15 Score=142.77 Aligned_cols=115 Identities=14% Similarity=0.222 Sum_probs=84.4
Q ss_pred cCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-----eEECCCCEECCCCEEe----------------------
Q psy17795 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVL---------------------- 439 (523)
Q Consensus 387 ~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~---------------------- 439 (523)
....|+++++|++++.|.+++.||++|.|+++|.|.. ++||++|.|+++|+|.
T Consensus 58 ~~~~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~ 137 (247)
T 1qre_A 58 SAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGK 137 (247)
T ss_dssp CCCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTE
T ss_pred CCcEECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCc
Confidence 3455667777777777767777777777777777754 3788888888888886
Q ss_pred --ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEe
Q psy17795 440 --NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKEL 513 (523)
Q Consensus 440 --~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i 513 (523)
+++||++|.||++|.|.+ .+.||++|+||.++.|.+ ++||++|+||++++|.+..|.+++.|
T Consensus 138 ~~~v~IG~~v~Ig~~~~I~~----------~~~Ig~~v~IG~~a~I~~--v~Ig~~~~IgagsvV~~~~I~~~~~v 201 (247)
T 1qre_A 138 EYAVYIGNNVSLAHQSQVHG----------PAAVGDDTFIGMQAFVFK--SKVGNNCVLEPRSAAIGVTIPDGRYI 201 (247)
T ss_dssp EESEEECTTCEECTTCEEEE----------EEEECTTCEECTTCEEEE--EEECTTCEECTTCEEESCEECTTBEE
T ss_pred cCceEECCCCEECCCCEEcC----------CcEECCCCEECCCCEEec--eEECCCCEECCCCEECCeEeCCCCEE
Confidence 278888888888888865 367888888888888776 67788888888888744444444433
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=133.37 Aligned_cols=138 Identities=16% Similarity=0.111 Sum_probs=66.8
Q ss_pred ceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCC
Q psy17795 383 CKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPC 460 (523)
Q Consensus 383 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~ 460 (523)
+.|++.++|++++.|++++.|+++++|+.++.||++|.|+ +++|+.++.||++|.|. ++.|++++.||+++.|+....
T Consensus 4 ~~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~ 83 (192)
T 3mqg_A 4 ATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMV 83 (192)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCB
T ss_pred CEECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceE
Confidence 4455555555555555555555555555555555555552 24455555555555553 344545555555554443222
Q ss_pred CCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCccc
Q psy17795 461 DPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTRSFKNEIL 522 (523)
Q Consensus 461 ~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~~i 522 (523)
..+.......++..... ....|.++ +.||.+|.|.++++| .+++|+++++|++++|+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~-~~~~Ig~~-v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~vp~~~v 144 (192)
T 3mqg_A 84 FTNVYNPRAAIERKSEY-RDTIVRQG-ATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFAL 144 (192)
T ss_dssp CCSCSSCBTTBCCGGGC-CCEEECTT-CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred EecccCCcccccccccc-CCcEECCC-cEECCCCEECCCCEECCCCEEcCCCEECcccCCCCE
Confidence 11111111111111000 11223333 444555555555555 57788888888888875543
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-14 Score=145.76 Aligned_cols=137 Identities=12% Similarity=0.176 Sum_probs=85.7
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEE-eeeEECCCCEECCCCEEe--------------------c
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVL--------------------N 440 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I-~~s~Ig~~~~Ig~~~~I~--------------------~ 440 (523)
.+.|++++.|++++.|++++.|++++.||++|.|+++++| .+++||++|.|+++++|. +
T Consensus 126 ~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~ 205 (357)
T 4e79_A 126 YVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRIAQLGS 205 (357)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEESCCCCCEEEETTEEEECCCCCC
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEecccEEEeEeeccCCeEECcccCcccccCCceeeccccCc
Confidence 3444444555555555555555555666666666666666 347777777777777773 5
Q ss_pred eEECCCCEECCCcEEcCCCCCCC------------CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-e----
Q psy17795 441 SIVGRNSKVGNWSRVEGTPCDPN------------PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-L---- 503 (523)
Q Consensus 441 ~iIg~~~~Ig~~~~i~~~~~~~~------------~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~---- 503 (523)
++||++|.||++++|........ .....++||++++++.++.|..+ +.||++|+||++++| .
T Consensus 206 v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~-v~IG~~~~Ig~~s~V~~~~~I 284 (357)
T 4e79_A 206 VLIGNDVRIGSNCSIDRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGS-TKIGKNCILAGACGVAGHLSI 284 (357)
T ss_dssp EEECTTCEECTTCEECCCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECTTCEECSSCEE
T ss_pred EEEcCCcEEccccEEeccccCCccccCCcccCCCcccCCCeEECCCCEECCCCEECCC-cEECCCCEECcCCEECCCeEE
Confidence 78888888888888853221110 01234667777777777777776 677899998888887 3
Q ss_pred --CeEEcCCcEeCCCC-CC
Q psy17795 504 --NSIVLPYKELTRSF-KN 519 (523)
Q Consensus 504 --~~~v~~~~~i~~~~-~~ 519 (523)
+++|+.+..|.+++ |.
T Consensus 285 g~~~vv~g~s~V~~~v~~~ 303 (357)
T 4e79_A 285 ADNVTLTGMSMVTKNISEA 303 (357)
T ss_dssp CSSEEECTTCEECSCBCSC
T ss_pred CCCCEEeecCEEcCccCCC
Confidence 34444555555555 43
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-14 Score=138.73 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=91.8
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTP 459 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~ 459 (523)
.+.|.+++.|++++.|++++.|++++.||++|.|+.++.|. +++||++|.|++++.|. ++.|++++.+++++.+.+..
T Consensus 82 ~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~~~~ 161 (273)
T 3fs8_A 82 ENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDP 161 (273)
T ss_dssp TCEEESSCEECTTCEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEECCCS
T ss_pred CCEEeCCCEECCCCEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEecCCC
Confidence 45555566666666666666666677777777777777664 47778888888888776 77888888888888887654
Q ss_pred CCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 460 CDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 460 ~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
.........++||++++||.+++|.+| +.||++|+|+++++|..
T Consensus 162 ~~~~~~~~~v~Ig~~~~IG~~~~I~~g-~~IG~~~~IgagsvV~~ 205 (273)
T 3fs8_A 162 TPPSNELLGVTIELFAVIAARSVVLPG-IHINEDALVGAGAVVTK 205 (273)
T ss_dssp SSSCSCCCCCEECTTCEECTTCEECTT-CEECTTCEECTTCEECS
T ss_pred CCcccccCCcEECCCeEEcCCCEEcCC-CEECCCCEECCCCEECc
Confidence 433334456999999999999999999 77799999999999954
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.5e-15 Score=146.52 Aligned_cols=110 Identities=12% Similarity=0.132 Sum_probs=66.9
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCce
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFA 469 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v 469 (523)
++.++.|+|++.|++++.||++|+|+++.+..++.||++|.|+.+++|. ++.||++|.|++++.|.+..+. .....+
T Consensus 142 ~~~~~~I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~--~~~~~v 219 (316)
T 3tk8_A 142 AAGGFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEP--LQANPV 219 (316)
T ss_dssp HHHCCEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSS--TTSCCC
T ss_pred ecCCcEEeCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCccc--ccCCCc
Confidence 3334444444444455555555555444111224455555565555554 4666777777777777553222 133467
Q ss_pred ecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 470 KMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 470 ~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
+||++|+||.+++|.+| ++||++|+||+|++|.
T Consensus 220 ~IGd~v~IG~~a~I~~g-v~IG~g~vIgagsvV~ 252 (316)
T 3tk8_A 220 IIEDNCFIGARSEVVEG-VIVEENSVISMGVYLG 252 (316)
T ss_dssp EECTTCEECTTCEECTT-CEECTTCEECTTCEEC
T ss_pred EECCCCEECCCCEEcCC-CEECCCCEEcCCCEEc
Confidence 88888888888888888 6678888888888884
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-14 Score=138.36 Aligned_cols=136 Identities=12% Similarity=0.159 Sum_probs=95.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEE-------------eeeEECCCCEECCCCEEe--------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-------------KESIILQGASIGNHSLVL-------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I-------------~~s~Ig~~~~Ig~~~~I~-------- 439 (523)
+.+.|.+++.|+++++|++++.|.+++.||++|.|++++.| ..++||+++.|+++|+|.
T Consensus 24 ~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~~~~~~~~~ 103 (270)
T 1j2z_A 24 EFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIK 103 (270)
T ss_dssp TTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEECCCCTTTTS
T ss_pred CCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEcCCeecCCc
Confidence 45566667777777777777777778888888888888888 357788888888888886
Q ss_pred ceEECCCCEECCCcEEcC-CCCCC-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCc
Q psy17795 440 NSIVGRNSKVGNWSRVEG-TPCDP-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYK 511 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~-~~~~~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~ 511 (523)
.+.||+++.|++++.|.. ..++. ....+++.|+++++||.++.|.++ +.||++|+|+++++|... |.|+.
T Consensus 104 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~-v~IG~~a~Ig~~s~V~~d-vp~~~ 181 (270)
T 1j2z_A 104 KTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQF-VRIAKGCMIAGKSALGKD-VPPYC 181 (270)
T ss_dssp EEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTCEECSB-BCTTE
T ss_pred cEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCC-cEeCCceEEecCcEeccc-CCCCe
Confidence 366666666665555521 11111 011246889999999999999999 777999999999998543 34444
Q ss_pred EeCCCCCC
Q psy17795 512 ELTRSFKN 519 (523)
Q Consensus 512 ~i~~~~~~ 519 (523)
.+ .+.|+
T Consensus 182 ~~-~G~pa 188 (270)
T 1j2z_A 182 TV-EGNRA 188 (270)
T ss_dssp EE-ETTBT
T ss_pred EE-ecCCc
Confidence 43 34443
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=132.88 Aligned_cols=208 Identities=13% Similarity=0.062 Sum_probs=115.2
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|+|.+|||||| .|+||++ ..||+|++++|+|||+|+++.+.+..++++|+|++++..+.+.+ +.+.+ . ..+
T Consensus 5 ~~~~aiIlA~G--~g~R~~~---~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~--~-~~i 75 (231)
T 1vgw_A 5 RKNIALIPAAG--IGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAF--P-QVR 75 (231)
T ss_dssp CCEEEEEECC---------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHC--T-TSE
T ss_pred CceEEEEEccc--ccccCCC---CCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcC--C-Cce
Confidence 55789999999 9999997 78999999999999999999999864599999999886556766 54421 1 134
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--Hhhccc-----CCcceEEEEc----cc-hH-H--HHHHHHhcCCc
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW-----VQEAVYFTLE----IR-SD-V--VILMHSLYSMA 236 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~-----~~d~~~Lvl~----i~-~D-~--l~~~h~~~~~~ 236 (523)
.++. ...| ++++++ .+++.. ..+. +++++ ++ .+ + +++.+.+.+
T Consensus 76 ~~~~--~~~~-----------------~~~si~~~l~~~~~~~~~~~~~~-vlv~~~D~p~~~~~~i~~l~~~~~~~~-- 133 (231)
T 1vgw_A 76 VWKN--GGQT-----------------RAETVRNGVAKLLETGLAAETDN-ILVHDAARCCLPSEALARLIEQAGNAA-- 133 (231)
T ss_dssp EECC--CCSS-----------------HHHHHHHHHHHHHHHSSSCTTSE-EEECCTTCTTCCHHHHHHHHHHHTTCT--
T ss_pred EEEc--CCCc-----------------HHHHHHHHHHHHhhhccCCCCCE-EEEEcCCcccCCHHHHHHHHHHHhhcC--
Confidence 4442 2334 777777 444421 2355 77765 22 22 2 555554432
Q ss_pred ceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccC
Q psy17795 237 ILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNG 316 (523)
Q Consensus 237 ~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~ 316 (523)
.. .+++.+.. +... .+++ |++....++ . ......+.|+|+++.+..+.+.... .+ +
T Consensus 134 ~~-~~~~~~~~--~~~~-----~~~~-g~i~~~~~~---~-~~~~~~~p~~f~~~~l~~~~~~~~~-~g-~--------- 189 (231)
T 1vgw_A 134 EG-GILAVPVA--DTLK-----RAES-GQISATVDR---S-GLWQAQTPQLFQAGLLHRALAAENL-GG-I--------- 189 (231)
T ss_dssp TC-EEEEEECC--SCEE-----EESS-SBEEEEECC---T-TEEEEEEEEEEEHHHHHHHHHC-----C-C---------
T ss_pred Ce-EEEEeecc--cceE-----EeCC-CceEecCCh---H-HheeeeCCcEecHHHHHHHHHHHhh-cC-C---------
Confidence 22 23344432 2211 1233 666544332 1 1112234899999876554331110 00 0
Q ss_pred CCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHH
Q psy17795 317 KDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRH 364 (523)
Q Consensus 317 ~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~ 364 (523)
.....++..+ ..++..+..++.|.+|+|++||..+...
T Consensus 190 --------~~~~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~ 227 (231)
T 1vgw_A 190 --------TDEASAVEKL--GVRPLLIQGDARNLKLTQPQDAYIVRLL 227 (231)
T ss_dssp --------CSHHHHHHTT--TCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred --------CcHHHHHHHc--CCCEEEEECCccccCcCCHHHHHHHHHH
Confidence 0012333322 2357777777899999999999877553
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-14 Score=145.07 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=20.2
Q ss_pred EEeCCCCEECCCcEE-------eCeEEcCCcEeCCCCCCc
Q psy17795 488 TILGDGVTVPGELIV-------LNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 488 ~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~~~~~~~ 520 (523)
++||++|+||.++.| .+++|++++.|++++|..
T Consensus 287 ~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~~~v~~~ 326 (374)
T 2iu8_A 287 TKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKSITSP 326 (374)
T ss_dssp CEECSSCEECTTCEECSSCEECTTEEECTTCEECSCBCSC
T ss_pred cEECCCeEEecCcEECCCcccCCCcEEccCceeecccCCC
Confidence 455666666666544 345666677777777643
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=151.07 Aligned_cols=75 Identities=15% Similarity=0.305 Sum_probs=58.3
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEc
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVE 456 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~ 456 (523)
+++.|.+++.||+++.|++++.|+ ++.||++|.|+++|.|.+++||++|.||++|+|. +++||+++.||+++.|.
T Consensus 279 ~~~~i~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~ 354 (459)
T 4fce_A 279 TNVIIEGHVILGDRVRIGTGCVLK-NCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIK 354 (459)
T ss_dssp TTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEE
T ss_pred CCeeeccceEECCCCEECCCCEEe-ccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEe
Confidence 566677777788888888888885 5888888888888888888888888888888887 67777777666666553
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-14 Score=149.71 Aligned_cols=191 Identities=13% Similarity=0.154 Sum_probs=128.4
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC-CcchHHHHHHHHhcCC---Ccc-EEEEEcc-CChHHHHHHHHhhhhc
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA-GLPMIQHHIEACVQVP---NLK-EIIILGY-YPSADLQKFVLDMVQE 166 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~-g~pli~~~l~~~~~~~---g~~-~i~vv~~-~~~~~i~~~l~~~~~~ 166 (523)
++.+|||||| +||||+. ..||+|+||+ |+|||+|+++++.+.. |+. .++|+++ +..+.++++|.+. ..
T Consensus 92 k~avViLAGG--~GTRmgs---~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~-~~ 165 (488)
T 2i5k_A 92 KLAVLKLNGG--LGTSMGC---VGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKY-SA 165 (488)
T ss_dssp GEEEEEECCC--BSGGGTC---CSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGG-CS
T ss_pred CceEEEEcCC--CcccCCC---CCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhc-cc
Confidence 4678999999 9999986 8999999999 9999999999987641 322 2555555 7888999999873 55
Q ss_pred cCeeEEEEecc-ccc-c-hhhhhccc-----cccccc-CCCchhHHH-H------hhc-ccCCcceEEEEc--cc---hH
Q psy17795 167 YKINIRYLQEF-WDI-I-HQQICISL-----YWTWYR-NTRSTYGIY-R------NSL-HWVQEAVYFTLE--IR---SD 224 (523)
Q Consensus 167 ~~~~i~~~~~~-~~~-g-~~~~~~~~-----~~~~~~-g~~ta~al~-~------~~i-~~~~d~~~Lvl~--i~---~D 224 (523)
+++++.++.|. .|. . +.....+. ...|++ | ||+++. . +.+ ....++ ++|+| .+ .|
T Consensus 166 fg~~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~G--tGga~~~L~~sg~l~~l~~~g~~~-v~V~ngDnL~~~~d 242 (488)
T 2i5k_A 166 NRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPG--HGDLFESLHVSGELDALIAQGREI-LFVSNGDNLGATVD 242 (488)
T ss_dssp SSCEEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCC--GGGHHHHHHHHTHHHHHHHTTCCE-EEEECTTBSSCCCC
T ss_pred cCceEEEEEeCccceEccccceeeccCCCCCceeeecCC--CchhhhhhhhcCcHHHHHhcCCCE-EEEEeCCcCCCccc
Confidence 78888888665 000 0 00000000 012444 5 899888 2 333 223467 88888 21 35
Q ss_pred H-HHHHHHhcCCcceEEEEEEeeCCCCCc-ceeEEEEcCCCCc--EEEEeecCCCc--------ccceeeeeEEEeeHHH
Q psy17795 225 V-VILMHSLYSMAILVTVMATEATRQQSV-YYGCIVRKQQTSE--ISHYVEKPSTF--------VSTLVNCGVYLFSLDI 292 (523)
Q Consensus 225 ~-l~~~h~~~~~~~~~tv~~~~~~~~~~~-~~g~v~~d~~~~~--V~~~~ekp~~~--------~~~l~~~Giyif~~~i 292 (523)
+ ++.+|.+.+ +++++.+.+.. ++. +||++..+ + |+ ++++.+.|.+. .....|+|+|+|+.+.
T Consensus 243 ~~~L~~~~~~~--a~~t~~v~~~~--~p~~~yG~Iv~~-d-G~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~ 316 (488)
T 2i5k_A 243 LKILNHMIETG--AEYIMELTDKT--RADVKGGTLISY-D-GQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKA 316 (488)
T ss_dssp HHHHHHHHHSC--CSEEEEEEECC--GGGSSSCEEEEE-T-TEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHH
T ss_pred HHHHHHHHhcC--CcEEEEEEEec--CCCCceeEEEEE-C-CcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHH
Confidence 5 678998888 88999888763 343 59988765 3 55 44444444321 2457899999999988
Q ss_pred HHHHHH
Q psy17795 293 FQNIAA 298 (523)
Q Consensus 293 l~~l~~ 298 (523)
++.+.+
T Consensus 317 L~~~l~ 322 (488)
T 2i5k_A 317 VKRLIE 322 (488)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776544
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-13 Score=128.28 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=54.0
Q ss_pred CCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 427 LQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 427 g~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
|++|.|++++.|. ++.||++|.|++++.|.+ .++||++++||.++.|.++ ++||++++||++++|...
T Consensus 111 G~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~----------~~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~Igagsvv~~~ 179 (194)
T 3bfp_A 111 EKGVILNTSSVIEHECVIGEFSHVSVGAKCAG----------NVKIGKNCFLGINSCVLPN-LSLADDSILGGGATLVKN 179 (194)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECTTCEECT----------TCEECTTCEECTTCEECTT-CEECTTCEECTTCEECSC
T ss_pred CCCCEECCCCEEcCCCEECCCCEECCCCEECC----------CcEECCCCEEcCCCEECCC-CEECCCCEECCCCEEccc
Confidence 3455555555554 566677777777777754 3667777777777777777 667999999999988444
Q ss_pred EEcCCcEeCCCCCCcc
Q psy17795 506 IVLPYKELTRSFKNEI 521 (523)
Q Consensus 506 ~v~~~~~i~~~~~~~~ 521 (523)
+.++.++ .+.|++.
T Consensus 180 -v~~~~~~-~G~Pa~~ 193 (194)
T 3bfp_A 180 -QDEKGVF-VGVPAKR 193 (194)
T ss_dssp -BCSCCEE-CCCCCCC
T ss_pred -cCCCCEE-EeeccEE
Confidence 2344443 4566654
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=137.10 Aligned_cols=140 Identities=15% Similarity=0.224 Sum_probs=87.3
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-----eeEECCCCEECCCCEEe--------------ce
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-----ESIILQGASIGNHSLVL--------------NS 441 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-----~s~Ig~~~~Ig~~~~I~--------------~~ 441 (523)
+.+.|++++.|++++.|++++.|.+++.||++|.|++++.|+ +++||++|.|+++|.|. ..
T Consensus 30 ~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~Ig~~~q~~~~~~~~~~~i 109 (305)
T 3t57_A 30 PYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFL 109 (305)
T ss_dssp TTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEEEECCCCTTCCTTCCEEE
T ss_pred CCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccEeCccccccceecCCCceE
Confidence 456666677777777777777777788888888888888886 58888999999888883 26
Q ss_pred EECCCCEECCCcEEcCCCCCCC--------------CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-----
Q psy17795 442 IVGRNSKVGNWSRVEGTPCDPN--------------PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV----- 502 (523)
Q Consensus 442 iIg~~~~Ig~~~~i~~~~~~~~--------------~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i----- 502 (523)
.||+++.|++++.|........ .....+.||+++.++.++.+..+ ++||++|+||++++|
T Consensus 110 ~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~-v~Igd~~~Ig~~~~V~~~v~ 188 (305)
T 3t57_A 110 CIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGH-VVVEDNTHTAGASVVHQFCH 188 (305)
T ss_dssp EECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECSSCEECTTCEECTTCE
T ss_pred EECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCC-CEECCceEEcCCCEEcCCeE
Confidence 7888888888888853221000 00012223333333333333333 445666666666554
Q ss_pred --eCeEEcCCcEeCCCCCCcc
Q psy17795 503 --LNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 503 --~~~~v~~~~~i~~~~~~~~ 521 (523)
.+++|++++.|++++|+..
T Consensus 189 IG~~a~ig~gs~V~~dvp~~~ 209 (305)
T 3t57_A 189 IGSFAFIGGGSVVSQDVPKYM 209 (305)
T ss_dssp ECTTCEECTTCEECSBBCTTE
T ss_pred ECCCCEEcCCCeEcccCCCCe
Confidence 3456666666667776544
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-13 Score=128.74 Aligned_cols=200 Identities=11% Similarity=0.048 Sum_probs=121.3
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCC-ccEEEEEccCChHHHHHHHHhhhhccCee
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPN-LKEIIILGYYPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g-~~~i~vv~~~~~~~i~~~l~~~~~~~~~~ 170 (523)
|++.+||||+| .|+||. +|+|++++|+|||+|+++.+.++ + +++|+|++. .+.+.+++.. ++++
T Consensus 2 ~~~~aiIlA~G--~s~R~~------~K~l~~i~Gkpli~~~i~~~~~~-~~~~~ivv~~~--~~~i~~~~~~----~g~~ 66 (229)
T 1qwj_A 2 PHLAALVLARG--GSKGIP------LKNIKRLAGVPLIGWVLRAALDA-GVFQSVWVSTD--HDEIENVAKQ----FGAQ 66 (229)
T ss_dssp CCEEEEEECCS--CCSSSS------CTTTSEETTEEHHHHHHHHHHHH-TCCSEEEEEES--CHHHHHHHHH----TTCE
T ss_pred CcEEEEEEcCC--CCCCCC------CcccceECCEEHHHHHHHHHHhC-CCcCEEEEECC--hHHHHHHHHH----cCCE
Confidence 45679999999 999995 49999999999999999999986 6 699999884 4567777654 4655
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cc--hHH--HHHHHHhcCCcceEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IR--SDV--VILMHSLYSMAILVT 240 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~--~D~--l~~~h~~~~~~~~~t 240 (523)
+ +..+.+... + ..+ ..+++. .+.+. ..+. +++++ ++ .++ +++.|.+.+ ++.+
T Consensus 67 ~-~~~~~~~~~----------~-~~~--~~~~v~~al~~~~-~~d~-vlv~~~D~Pli~~~~i~~l~~~~~~~~--~~~~ 128 (229)
T 1qwj_A 67 V-HRRSSETSK----------D-SST--SLDAIVEFLNYHN-EVDI-VGNIQATSPCLHPTDLQKVAEMIREEG--YDSV 128 (229)
T ss_dssp E-EECCGGGSS----------T-TCC--HHHHHHHHHTTCT-TCSE-EEEECTTCTTCCHHHHHHHHHHHHSSC--CSEE
T ss_pred E-EeChhhhcC----------C-CCc--HHHHHHHHHHhcC-CCCE-EEEecCCCCcCCHHHHHHHHHHHHhCC--CCEE
Confidence 5 332211100 0 001 235565 44442 2355 78877 22 133 777777666 6554
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEE--Eeec----C--CCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccc
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISH--YVEK----P--STFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNY 312 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~--~~ek----p--~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~ 312 (523)
+.+.+. .+|..++. .| ....+.+ +.++ + ..+.....++|+|+|++++| +..
T Consensus 129 ~~~~~~--~~p~~~~v--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~giY~~~~~~l--~~~-------------- 187 (229)
T 1qwj_A 129 FSVVRR--HQFRWSEI--QK-GVREVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLI--EMG-------------- 187 (229)
T ss_dssp EEEEEE--CCCEECCC--CS-STTCCCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHH--HTT--------------
T ss_pred EEEeec--cChhHhhc--cc-cccccccccccccccccCCCCCCceEEEeeEEEEEEHHHh--ccc--------------
Confidence 444433 23444432 22 1001111 1111 1 11234578999999999877 110
Q ss_pred cccCCCCCcccccchhhhhhhhhcCCc-EEEEEcc-hhHhhhccchhhhhccHHHHh
Q psy17795 313 MVNGKDTDFNHIQLEKEIIMPLAGSGK-AYVYQTS-KWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 313 ~~~~~~~~~~~~~~~~dil~~li~~g~-v~~~~~~-g~w~dIgt~~dyl~an~~~l~ 367 (523)
+ ..+. +..+..+ ++|.+|+|++||..++..+..
T Consensus 188 ---------------------~-~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 188 ---------------------Y-LQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp ---------------------C-SSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred ---------------------c-ccCCeEEEEECCcccccCCCCHHHHHHHHHHHHH
Confidence 1 1232 3321444 789999999999999876654
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-14 Score=138.66 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=9.6
Q ss_pred hhcCCcEEEEEc--chhHh
Q psy17795 334 LAGSGKAYVYQT--SKWWS 350 (523)
Q Consensus 334 li~~g~v~~~~~--~g~w~ 350 (523)
++++|++.+.+. +|.|.
T Consensus 61 ~l~~g~~r~a~~~~~g~w~ 79 (304)
T 3eg4_A 61 LLDRGEVRVAEKQADGNWH 79 (304)
T ss_dssp HHHTTSSCSEEECTTSCEE
T ss_pred HhcCCCeEEEEEcCCCceE
Confidence 556777665544 35563
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=127.03 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=86.9
Q ss_pred CCceEecCcEECCCCEECCCCEECCC---cEECCCCEECCCCEEe-----eeEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRIK-----ESIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~-----~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+++.+.+++.|++++.|++++.|.++ +.||++|.|++++.|. +++||++|.|++++.|.+++||++|.||.+
T Consensus 21 ~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~ 100 (173)
T 1v3w_A 21 ENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGIS 100 (173)
T ss_dssp TTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTT
T ss_pred CCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCCEECCC
Confidence 56777788899999999999999764 9999999999999997 589999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEE
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTV 496 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~I 496 (523)
+.|.+ .++||++++|++++++.++ +.|++++++
T Consensus 101 ~~i~~----------~~~Ig~~~~Ig~~s~V~~~-~~i~~~~~v 133 (173)
T 1v3w_A 101 SVILD----------GAKIGDHVIIGAGAVVPPN-KEIPDYSLV 133 (173)
T ss_dssp CEECT----------TCEECSSEEECTTCEECTT-CEECTTEEE
T ss_pred CEEeC----------CCEECCCCEECCCCEECCC-cEeCCCcEE
Confidence 99976 3678888777777655544 333444444
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.3e-14 Score=132.14 Aligned_cols=132 Identities=13% Similarity=0.088 Sum_probs=101.7
Q ss_pred cCcEECCCCEECCC-CEECC---CcEECCCCEECCCCEEee----eEECCCCEECCCCEE----eceEECCCCEECCCcE
Q psy17795 387 GDVYIHSSASVHPT-AIVGP---NVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLV----LNSIVGRNSKVGNWSR 454 (523)
Q Consensus 387 ~~~~i~~~~~I~~~-~~I~~---~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I----~~~iIg~~~~Ig~~~~ 454 (523)
..++|++++.|.++ +.|.+ ++.||++|.|++++.|.. +.||++|.|++.+.+ .+++||++|.|+++|.
T Consensus 35 ~~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~ 114 (215)
T 2wlg_A 35 NSVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYE 114 (215)
T ss_dssp CEEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEE
T ss_pred CEEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEE
Confidence 35888889988887 56655 399999999999999963 999999999995555 5789999999999999
Q ss_pred EcCCC-CCC--------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCc
Q psy17795 455 VEGTP-CDP--------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 455 i~~~~-~~~--------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~ 520 (523)
|.+.. +.. ......++||++++||++++|.+| ++||++|+|+++++|... +.+++.+.++.|+.
T Consensus 115 I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~g-v~Ig~~~vIgagsvV~~~-vp~~~i~~aG~Pa~ 187 (215)
T 2wlg_A 115 IRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKG-VCIPNNVVVGSHTVLYKS-FKEPNCVIAGSPAK 187 (215)
T ss_dssp EESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTT-CEECSSCEECTTCEECSC-CCCCSCEEETTTTE
T ss_pred EECCCCcccccccccccccCCCCeEECCCcEECCCCEECCC-CEECCCCEECCCCEEcCc-cCCCeEEEcccCCE
Confidence 97641 100 112346899999999999999999 778999999999999543 34444433255544
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-13 Score=128.24 Aligned_cols=110 Identities=22% Similarity=0.262 Sum_probs=95.4
Q ss_pred CCceEecCcEECCCCEECCCCEEC----CCcEECCCCEECCCCEEee---------------eEECCCCEECCCCEEec-
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVG----PNVSIDDGAVIGPGVRIKE---------------SIILQGASIGNHSLVLN- 440 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~----~~~~Ig~~~~I~~~~~I~~---------------s~Ig~~~~Ig~~~~I~~- 440 (523)
+.+.+.+++.|++++.|++++.|. .+++||++|.|+++|.|.. ++||++|.|++++.|.+
T Consensus 50 ~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~ 129 (213)
T 3kwd_A 50 SFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGP 129 (213)
T ss_dssp TTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEE
T ss_pred CCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCC
Confidence 577888889999999999999984 3689999999999999975 89999999999999996
Q ss_pred eEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 441 SIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 441 ~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
++||++|.||+++.|.+ ++||++++||++++| .+ ++|++++.|++++++.
T Consensus 130 v~Ig~~v~IG~~a~I~~-----------~~Ig~~~~Igags~V-~~-~~i~~~~~v~~~~vv~ 179 (213)
T 3kwd_A 130 AYIGDGCFIGFRSTVFN-----------ARVGAGCVVMMHVLI-QD-VEIPPGKYVPSGMVIT 179 (213)
T ss_dssp EEECTTCEECTTCEEEE-----------EEECTTCEECSSCEE-ES-CEECTTBEECTTCEEC
T ss_pred CEECCCCEECCCCEEeC-----------cEECCCCEEcCCCEE-CC-cEeCCCCEECCCcEEc
Confidence 99999999999999963 689999999999877 35 5668888888877774
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=125.30 Aligned_cols=96 Identities=13% Similarity=0.250 Sum_probs=82.6
Q ss_pred CCceEecCcEECCCCEECCCCEECCC---cEECCCCEECCCCEEe-----eeEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRIK-----ESIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~-----~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+++.+.+++.|++++.|++++.|.++ ++||++|.|+++|.|. +++||++|.|++++.|.+++||++|.||.+
T Consensus 23 ~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~ 102 (173)
T 1xhd_A 23 DYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMG 102 (173)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTT
T ss_pred CCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCCEEcCC
Confidence 56777788889999999999988654 8999999999999998 799999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
+.|.+ .++||++++|++++.+.++
T Consensus 103 ~~i~~----------~~~Ig~~~~Ig~~s~V~~~ 126 (173)
T 1xhd_A 103 SIILD----------GAEIGEGAFIGAGSLVSQG 126 (173)
T ss_dssp CEECT----------TCEECTTCEECTTCEECTT
T ss_pred CEEcC----------CCEECCCCEECCCCEECCC
Confidence 99975 3677888777777655444
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=146.17 Aligned_cols=132 Identities=20% Similarity=0.198 Sum_probs=76.2
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-c-------------------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-N------------------- 440 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~------------------- 440 (523)
+.+.|.+++.|++++.|++++.|+ ++.||++|.|+ ++.|.+++||++|.||++|.|. +
T Consensus 285 ~~~~i~~~~~ig~~~~I~~~~~i~-~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ 362 (468)
T 1hm9_A 285 ANVILKGQTKIGAETVLTNGTYVV-DSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSS 362 (468)
T ss_dssp SSCEEESSCEECTTCEECTTCEEE-SCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCE
T ss_pred CCcEECCCCEECCCCEECCCCEEe-ccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeE
Confidence 344555555555555555555553 44444444444 4444444444444444444433 2
Q ss_pred ---------------eEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 441 ---------------SIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 441 ---------------~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
+.||++|.||+++.+.+. .......++||++|+||.++.|.++ +.||++|+||++++|...
T Consensus 363 Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~---~~~~~~~~~Ig~~~~Ig~~~~i~~~-v~Ig~~~~i~~~s~v~~~ 438 (468)
T 1hm9_A 363 IGENTKAGHLTYIGNCEVGSNVNFGAGTITVNY---DGKNKYKTVIGDNVFVGSNSTIIAP-VELGDNSLVGAGSTITKD 438 (468)
T ss_dssp ECTTCEEEEEEEEESEEECTTCEECTTCEEECB---CSSCBCCEEECTTCEECTTCEEESS-CEECTTCEECTTCEECSC
T ss_pred EcCCcEeCCceEEccccccCCcEECCCcEEecC---cCccCCCcEECCCeEECCCCEEeCC-cEECCCCEECCCCEECCC
Confidence 334444444444444321 1112236899999999999999999 677999999999999542
Q ss_pred EEcCCcEeCCCCCCc
Q psy17795 506 IVLPYKELTRSFKNE 520 (523)
Q Consensus 506 ~v~~~~~i~~~~~~~ 520 (523)
|.|+..+ .+.|+.
T Consensus 439 -v~~~~~~-~G~pa~ 451 (468)
T 1hm9_A 439 -VPADAIA-IGRGRQ 451 (468)
T ss_dssp -BCTTCEE-CCSCCC
T ss_pred -CCCCCEE-EcCcce
Confidence 3444444 344544
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-13 Score=142.74 Aligned_cols=193 Identities=13% Similarity=0.087 Sum_probs=131.9
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCccccee---CCcchHHHHHHHHhc--------CCC----ccEEEEEccCChHHHH
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPV---AGLPMIQHHIEACVQ--------VPN----LKEIIILGYYPSADLQ 157 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i---~g~pli~~~l~~~~~--------~~g----~~~i~vv~~~~~~~i~ 157 (523)
+|.+|||||| .||||+. ..||+|+|| .|+|+|+++++.+.+ . | +..+++...+..+.++
T Consensus 102 kvavViLAGG--~GTRLg~---~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~-G~~~~ip~vImtS~~t~e~t~ 175 (505)
T 1jv1_A 102 KVAVLLLAGG--QGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYY-GNKCIIPWYIMTSGRTMESTK 175 (505)
T ss_dssp CEEEEEECCC--CCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHH-SSCCCCCEEEEECTTTHHHHH
T ss_pred ceEEEEEcCC--ccccCCC---CCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEecCCCHHHHH
Confidence 5789999999 9999975 899999999 799999999999765 2 4 7777777777888999
Q ss_pred HHHHhhhhccCe---eEEEEeccc-cc-ch-hhhhc--cccccccc-CCCchhHHH-H-------hhcccCCcceEEEEc
Q psy17795 158 KFVLDMVQEYKI---NIRYLQEFW-DI-IH-QQICI--SLYWTWYR-NTRSTYGIY-R-------NSLHWVQEAVYFTLE 220 (523)
Q Consensus 158 ~~l~~~~~~~~~---~i~~~~~~~-~~-g~-~~~~~--~~~~~~~~-g~~ta~al~-~-------~~i~~~~d~~~Lvl~ 220 (523)
+||++. ..+++ +|.+..|.. |. .. -..+. .....|+. | ||+.+. . +++....++ ++|+|
T Consensus 176 ~~f~~~-~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~G--tGG~~~~L~~sg~L~~l~~~g~e~-~~V~n 251 (505)
T 1jv1_A 176 EFFTKH-KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDG--NGGLYRALAAQNIVEDMEQRGIWS-IHVYC 251 (505)
T ss_dssp HHHHHT-GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECC--GGGHHHHHHHTTHHHHHHHTTCCE-EEEEE
T ss_pred HHHHhh-hhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCC--chHHHHHHHHcCcHHHHHhcCCCE-EEEEE
Confidence 999883 55677 477665421 00 00 00000 00012333 4 888877 2 122222467 88888
Q ss_pred ---cch---HH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC----------cccceeee
Q psy17795 221 ---IRS---DV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST----------FVSTLVNC 283 (523)
Q Consensus 221 ---i~~---D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~----------~~~~l~~~ 283 (523)
+.+ |. ++.+|..++ +++++.+.+.. ..+.++|++..++...+|+++.|+|.. ...+..|+
T Consensus 252 ~Dn~L~~~~d~~~lg~~~~~~--~~~~~~v~~k~-~~~e~~Gvl~~~dg~~~vvEy~E~p~~~~~~~~~~g~~~~~~~N~ 328 (505)
T 1jv1_A 252 VDNILVKVADPRFIGFCIQKG--ADCGAKVVEKT-NPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNI 328 (505)
T ss_dssp TTBTTCCTTCHHHHHHHHHTT--CSEEEEEEECC-STTCSCCEEEEETTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEE
T ss_pred CCccccccchHHHHHHHHHcC--CCEEEEEEEcc-CCccCcceEEEECCeEEEEEEeeCCHHHhhhcccccccccceeeE
Confidence 223 34 899999988 99998887632 245789998775311245666777642 12468999
Q ss_pred eEEEeeHHHHHHHHH
Q psy17795 284 GVYLFSLDIFQNIAA 298 (523)
Q Consensus 284 Giyif~~~il~~l~~ 298 (523)
|+|+|+.++++.+.+
T Consensus 329 ~~~~f~l~~L~~i~~ 343 (505)
T 1jv1_A 329 ANHFFTVPFLRDVVN 343 (505)
T ss_dssp EEEEEEHHHHHHHHH
T ss_pred EEEEecHHHHHHHHH
Confidence 999999999888765
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=135.02 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=96.0
Q ss_pred cCcEECCCCEECCCCEE----CCCcEECCCCEECCCCEEe---eeEECCCCEECCCCEEe----ceEECCCCEECCCcEE
Q psy17795 387 GDVYIHSSASVHPTAIV----GPNVSIDDGAVIGPGVRIK---ESIILQGASIGNHSLVL----NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 387 ~~~~i~~~~~I~~~~~I----~~~~~Ig~~~~I~~~~~I~---~s~Ig~~~~Ig~~~~I~----~~iIg~~~~Ig~~~~i 455 (523)
.++.|++++.|.+.+.+ ..++.||++|.|++++.|. +++||++|.|+++|.|. ++.||++|.||++|.|
T Consensus 62 ~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I 141 (252)
T 3jqy_B 62 NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVIL 141 (252)
T ss_dssp CEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEE
T ss_pred CEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEE
Confidence 55777777777776666 4667889999998888884 58999999999999998 8999999999999999
Q ss_pred cCCCCCC---------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 456 EGTPCDP---------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 456 ~~~~~~~---------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
.+..... ....+.++||++|+||++++|.+| ++||++|+||++++|..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~g-v~IG~~~~IgagsvV~~ 198 (252)
T 3jqy_B 142 RASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKG-VSVGSGSVIGYGSIVTK 198 (252)
T ss_dssp ECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTT-CEECTTCEECTTCEECS
T ss_pred ecCCCcccccccccccccccCCeEEecCcEECCCCEECCC-CEECCCCEECCCCEECc
Confidence 7642111 123355899999999999999999 77899999999999943
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-13 Score=131.50 Aligned_cols=110 Identities=23% Similarity=0.339 Sum_probs=91.6
Q ss_pred CCceEecCcEECCCCEECCCCEECCC----cEECCCCEECCCCEEee------------------------eEECCCCEE
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPN----VSIDDGAVIGPGVRIKE------------------------SIILQGASI 432 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~----~~Ig~~~~I~~~~~I~~------------------------s~Ig~~~~I 432 (523)
+++.+.+++.||+++.|++++.|.+. ++||++|.|+++|.|.. ++||++|.|
T Consensus 70 ~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~I 149 (247)
T 1qre_A 70 PQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSL 149 (247)
T ss_dssp TTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEE
T ss_pred CCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEE
Confidence 45666678888888888888888653 49999999999999963 899999999
Q ss_pred CCCCEEec-eEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 433 GNHSLVLN-SIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 433 g~~~~I~~-~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
|++|.|.+ ++||++|.||.+|.|.+ ++||++++||++++| ++ +.|+++++|++++++.
T Consensus 150 g~~~~I~~~~~Ig~~v~IG~~a~I~~-----------v~Ig~~~~IgagsvV-~~-~~I~~~~~v~~g~vv~ 208 (247)
T 1qre_A 150 AHQSQVHGPAAVGDDTFIGMQAFVFK-----------SKVGNNCVLEPRSAA-IG-VTIPDGRYIPAGMVVT 208 (247)
T ss_dssp CTTCEEEEEEEECTTCEECTTCEEEE-----------EEECTTCEECTTCEE-ES-CEECTTBEECTTCEEC
T ss_pred CCCCEEcCCcEECCCCEECCCCEEec-----------eEECCCCEECCCCEE-CC-eEeCCCCEECCCCEEe
Confidence 99999997 99999999999999963 678999998888877 65 5667777777777764
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=137.71 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=69.8
Q ss_pred CCceEec-CcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 381 SQCKTIG-DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 381 ~~~~i~~-~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
.+..|.+ ++.|++++.|++++.|+++++||++|+|+++|.|++|+|++++.|+++++|.+++|+++|.|+.++++.+
T Consensus 57 ~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~ 134 (334)
T 2pig_A 57 GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLN 134 (334)
T ss_dssp SSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEES
T ss_pred CceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeC
Confidence 4568888 8999999999999999999999999999999999999999999999999999988888888888887654
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=144.90 Aligned_cols=134 Identities=17% Similarity=0.193 Sum_probs=91.0
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceE-----------------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSI----------------- 442 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~i----------------- 442 (523)
+++.|.+++.||+++.|++++.|. ++.||++|.|++++.|.+++||++|.|+++++|. +++
T Consensus 276 ~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~~~ 354 (456)
T 2v0h_A 276 VNVIIEGNVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKST 354 (456)
T ss_dssp SSEEEEEEEEECTTCEECTTCEEE-EEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEESCE
T ss_pred CCcEEcCCcEECCCCEECCCCEEE-eEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEeccE
Confidence 456666667777777777777774 6777888888888877777777777777766665 344
Q ss_pred -----------------ECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 443 -----------------VGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 443 -----------------Ig~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
||++|.||+++.+.+. .......++||++++||+++.|.++ +.||++|+||++++|.+.
T Consensus 355 i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~---~~~~~~~v~Ig~~~~Ig~~~~i~~~-v~Ig~~~~ig~~s~v~~~ 430 (456)
T 2v0h_A 355 VGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNY---DGANKFKTIIGDDVFVGSDTQLVAP-VKVANGATIGAGTTITRD 430 (456)
T ss_dssp ECTTCEEEEEEEEESEEECTTCEECTTCEEEEC---SSSSCCCEEECSSCEECTTCEEEES-EEECTTCEECTTCEECSC
T ss_pred ECCCCEeccceeecCcEECCCcEECCceEEecc---ccccCCCcEECCCCEECCCCEEcCC-cEECCCCEECCCCEECCC
Confidence 4444444444444321 0112236999999999999999999 778999999999999543
Q ss_pred EEcCCcEeCCCCCCcc
Q psy17795 506 IVLPYKELTRSFKNEI 521 (523)
Q Consensus 506 ~v~~~~~i~~~~~~~~ 521 (523)
|.+++.+ .+.|+..
T Consensus 431 -v~~~~~~-~G~pa~~ 444 (456)
T 2v0h_A 431 -VGENELV-ITRVAQR 444 (456)
T ss_dssp -BCTTCEE-CCCCCCC
T ss_pred -cCCCCEE-EccCcee
Confidence 3445444 3445443
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-13 Score=123.78 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=85.9
Q ss_pred CCceEecCcEECCCCEECCCCEEC---CCcEECCCCEECCCCEEee-----------------eEECCCCEECCCCEEec
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKE-----------------SIILQGASIGNHSLVLN 440 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~-----------------s~Ig~~~~Ig~~~~I~~ 440 (523)
+.+.|.+++.||+++.|++++.|. +++.||++|.|++++.|.+ ++||+++.|+.++.+.+
T Consensus 23 ~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~ 102 (194)
T 3tv0_A 23 VESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYSQA 102 (194)
T ss_dssp TTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCEECC
T ss_pred CCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcceEecceeEee
Confidence 467778888888888888888884 4679999999999999953 68999999999999999
Q ss_pred eEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEE
Q psy17795 441 SIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTV 496 (523)
Q Consensus 441 ~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~I 496 (523)
+.||++|.|+.+|.|.. .++||++|+||+++.|.++ +.|+++++|
T Consensus 103 ~~Ig~~~~Ig~~~~I~~----------gv~IG~~~~IgagsvV~~~-~~Ip~~svv 147 (194)
T 3tv0_A 103 MKMGDNNVIESKAYVGR----------NVILTSGCIIGACCNLNTF-EVIPENTVI 147 (194)
T ss_dssp SEECSSCEECTTCEECT----------TEEECSSCEECTTCEECCC-EEECTTEEE
T ss_pred eeecccceecceeeECC----------eEEECCCCEECCCCEECCC-cEECCCCEE
Confidence 99999999999999975 4788888888888766555 444555444
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-13 Score=124.16 Aligned_cols=98 Identities=11% Similarity=0.075 Sum_probs=74.0
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|.|.+|||||| .|+||++ ||+|++++|+|||+|+++.+.+. ++++|+|++++..+.+.+++.+ +++.+
T Consensus 4 ~~~~~iIlA~G--~~~R~g~-----~K~l~~~~g~pli~~~l~~l~~~-~~~~i~vv~~~~~~~~~~~~~~----~~~~~ 71 (199)
T 2waw_A 4 SRVTGVVLAAG--YSRRLGT-----PKQLLPLGDTTLLGATLAMARRC-PFDQLIVTLGGAADEVLEKVEL----DGLDI 71 (199)
T ss_dssp CCEEEEEEESS--CCTTTTS-----CGGGCEETTEEHHHHHHHHHHTS-SCSEEEEEECTTHHHHHHHSCC----TTSEE
T ss_pred CceEEEEECCC--CCCCCCC-----CEEeCEeCccCHHHHHHHHHHhC-CCCcEEEEeCCCHHHHHHHhcc----CCCEE
Confidence 45789999999 9999974 99999999999999999999986 7999999999877777776654 45544
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE 220 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~ 220 (523)
.+ .+....| ++++++ .+++....+. +++++
T Consensus 72 ~~-~~~~~~g-----------------~~~~i~~al~~~~~~~~~-vlv~~ 103 (199)
T 2waw_A 72 VL-VDDAGLG-----------------CSSSLKSALTWVDPTAEG-IVLML 103 (199)
T ss_dssp EE-CCCCCTT-----------------CCCHHHHHHHTSCTTCSE-EEEEE
T ss_pred EE-CCCcccC-----------------HHHHHHHHHHhhhccCCe-EEEEe
Confidence 22 2222344 788888 5565312356 77776
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-13 Score=133.58 Aligned_cols=75 Identities=9% Similarity=0.184 Sum_probs=37.8
Q ss_pred EECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 425 IILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 425 ~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
.||++|.|+++++|. ++.||++|.|++++.|.+... ......++||++|+||++++|.+| ++||++|+||+|++|
T Consensus 135 ~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~--~~~~~~v~IGd~v~IG~~a~I~~g-v~IG~~avIgagsvV 210 (276)
T 3gos_A 135 FVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLE--PLQANPTIIEDNCFVGARSEVVEG-VIVEEGSVISMGVFI 210 (276)
T ss_dssp EECTTCEECTTEEECTTCEECTTCEECTTCEECCCCS--STTSCCCEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCccc--cCCCCCeEECCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 334444444444444 255555555555555543211 112234556666666666666655 445666666666655
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=132.78 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=88.9
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe---------ceEECCCCEEC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL---------NSIVGRNSKVG 450 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~---------~~iIg~~~~Ig 450 (523)
+.+.|.+++.|++++.|+++ .|+.++.||++|.|+++++|++ +.||++|.|++++.|. .++||++|.||
T Consensus 109 p~a~I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~IG 187 (276)
T 3gos_A 109 PPATVRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVG 187 (276)
T ss_dssp TTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEEC
T ss_pred CCcEECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCEEC
Confidence 44556666666666666665 5666888888888888888876 8888888888888885 48999999999
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCC-------EECCCcEE-eCe
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGV-------TVPGELIV-LNS 505 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~-------~Ig~~~~i-~~~ 505 (523)
.+|.|.+ .++||++++||++++|.++ +.|++.+ .|++++++ .++
T Consensus 188 ~~a~I~~----------gv~IG~~avIgagsvV~~~-~~I~~~~~~~~~~g~Vp~~svvv~G~ 239 (276)
T 3gos_A 188 ARSEVVE----------GVIVEEGSVISMGVFIGQS-TRIYDRETGEVHYGRVPAGSVVVSGN 239 (276)
T ss_dssp TTCEECT----------TCEECTTCEECTTCEECTT-CCEEETTTCCEECSEECTTEEEEEEE
T ss_pred CCCEECC----------CCEECCCCEECCCCEECCC-cEEccccccceeccccCCCcEEECCC
Confidence 9999975 4789999999999988888 6668877 88888877 454
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.3e-14 Score=138.69 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=78.0
Q ss_pred eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCC
Q psy17795 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPN 463 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~ 463 (523)
.+..++.|+|.+.|.+++.|+++++|+++|.|+.++ .||++|.|..++.+. ++||++|.|+++|.|.+... .
T Consensus 180 vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na-----~IGdg~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~~--~ 251 (347)
T 3r5d_A 180 VVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNA-----GTEGPGMIEGRVSAG-VFVGKGSDLGGGCSTMGTLS--G 251 (347)
T ss_dssp CCCTTEEESSGGGBBTTEEECTTEEECTTCEECTTE-----EESSSEEECSEECTT-CEECTTEEECTTCEECC------
T ss_pred eccCCcEECCcCEECCCCEECCCCEECCCCEECCCC-----EECCCcEEcCCceEe-EEECCCCEECCCCEEccccC--C
Confidence 344455555555555555555555555555554444 445777776666554 99999999999999976422 1
Q ss_pred CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEc
Q psy17795 464 PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVL 508 (523)
Q Consensus 464 ~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~ 508 (523)
.....++||++|+||++++| | +.||++|+||+|++| .+..|+
T Consensus 252 ~~~~~V~IGdnv~IGAnAtI--G-VtIGd~~iIGAGSVVtkdt~I~ 294 (347)
T 3r5d_A 252 GGNIVISVGEGCLIGANAGI--G-IPLGDRNIVEAGLYITAGTKVA 294 (347)
T ss_dssp --CCCCEECTTCEECTTCEE--C-SCBCTTCEECTTCEECTTCEEE
T ss_pred CCccceEECCCCEECCCCEE--e-eEECCCCEECCCCEECCCCEEE
Confidence 23456999999999999999 7 667999999999999 666665
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=124.33 Aligned_cols=95 Identities=19% Similarity=0.296 Sum_probs=80.3
Q ss_pred CCceEecCcEECCCCEECCCCEECCC---cEECCCCEECCCCEE------------eeeEECCCCEECCCCEEeceEECC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRI------------KESIILQGASIGNHSLVLNSIVGR 445 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I------------~~s~Ig~~~~Ig~~~~I~~~iIg~ 445 (523)
+.+.+.+++.||+++.|++++.|.++ +.||++|.|++++.| .+++||++|.|+++|.|.+++||+
T Consensus 26 ~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~ 105 (187)
T 3r3r_A 26 TSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGN 105 (187)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCEECS
T ss_pred CCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcEECC
Confidence 56777888889999999999988765 499999999999999 569999999999999999999999
Q ss_pred CCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecC
Q psy17795 446 NSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNP 485 (523)
Q Consensus 446 ~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~ 485 (523)
+|.||.+|+|.+ .+.|+++++|+++++|.+
T Consensus 106 ~~~Ig~~~~I~~----------~~~Ig~~~~Ig~~s~V~~ 135 (187)
T 3r3r_A 106 RVLVGMGSIVLD----------GAIIEDDVMIGAGSLVPQ 135 (187)
T ss_dssp SEEECTTCEECT----------TCEECSSEEECTTCEECT
T ss_pred CCEECCCCEECC----------CCEECCCCEECCCCEECC
Confidence 999999999965 366777766666654433
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=134.72 Aligned_cols=113 Identities=18% Similarity=0.213 Sum_probs=74.2
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCc
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAF 468 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~ 468 (523)
.+++++.|+|.++|++++.||++|.|++++.|. ++.++.+|.|...+.+ ++.||++|.|+++|.|.+.... .....
T Consensus 157 vI~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~i-Gv~IGd~v~IgpGa~IgG~~~~--~~~~~ 233 (332)
T 3fsy_A 157 VVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISA-GVVVGDGSDVGGGASIMGTLSG--GGTHV 233 (332)
T ss_dssp CCCTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECT-TCEECTTCEECTTCEECSBCC-----CCB
T ss_pred ecCCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceec-ceEECCCCEECCCCEEcCCCCC--CCccc
Confidence 344444444444444444445555555444442 2344566666544332 5899999999999999764322 34567
Q ss_pred eecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEc
Q psy17795 469 AKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVL 508 (523)
Q Consensus 469 v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~ 508 (523)
+.||++|+||++++| + +.||++|+||+|++| .+..|.
T Consensus 234 V~IGDnv~IGanAtI--g-VtIGd~~iIGAGSVVtkdt~I~ 271 (332)
T 3fsy_A 234 ISIGKRCLLGANSGL--G-ISLGDDCVVEAGLYVTAGTRVT 271 (332)
T ss_dssp CEECTTCEECTTCEE--C-SCBCSSCEECTTCEECTTCEEE
T ss_pred eEECCCCEECCCCEE--e-eEECCCCEECCCCEECCCCEEE
Confidence 999999999999999 7 677999999999999 555443
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-12 Score=123.12 Aligned_cols=207 Identities=9% Similarity=0.030 Sum_probs=126.6
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh-HHHHHHHHhhhhccCeeEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS-ADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~ 172 (523)
+.+|||||| .|+||+. ..||+|++++|+|||+|+++.|.+++.+++|+|++++.. +.+++++.. .+.
T Consensus 8 ~~aIIlAaG--~g~Rmg~---~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-------~v~ 75 (231)
T 3q80_A 8 VVAIVPAAG--SGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH-------RAM 75 (231)
T ss_dssp EEEEEECCC--CCTTTCS---SSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG-------GCE
T ss_pred eEEEEECCC--CCccCCC---CCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC-------CeE
Confidence 469999999 9999986 789999999999999999999998756999999998754 455555432 233
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccC--CcceEEEEc----c-chHH---HHHHHHhcCCcceEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWV--QEAVYFTLE----I-RSDV---VILMHSLYSMAILVT 240 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~--~d~~~Lvl~----i-~~D~---l~~~h~~~~~~~~~t 240 (523)
++.... + ..++++ ...+... .+. +|++. + -.+. +++.+.+ + .+.+
T Consensus 76 ~v~gg~--~-----------------r~~sv~~gl~~~~~~~~~d~-Vlv~~~d~Pli~~~~i~~li~~~~~-~--~~~~ 132 (231)
T 3q80_A 76 IVAGGS--N-----------------RTDTVNLALTVLSGTAEPEF-VLVHDAARALTPPALVARVVEALRD-G--YAAV 132 (231)
T ss_dssp EEECCS--S-----------------HHHHHHHHHGGGC---CCSE-EEECCTTCTTCCHHHHHHHHHHHHT-T--CSEE
T ss_pred EEcCCC--c-----------------hHHHHHHHHHHhhhcCCCCE-EEEEcCCcCCCCHHHHHHHHHHHhh-c--CCeE
Confidence 443211 1 235565 4555421 345 66665 2 2233 5566554 2 3445
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHH-HHHHhhcccccccccccccccCCCC
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQ-NIAAVFQSKQDEFYNGNYMVNGKDT 319 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~-~l~~~~~~~~~e~~~~~~~~~~~~~ 319 (523)
+.+.++. ++..+ .|++ |+|.+..+. ..-..+.+ -+.|+.+.+. .+......+ ++||+
T Consensus 133 i~~~p~~--dt~~~----~~~~-g~v~~~~~r---~~l~~~qT-Pq~F~~~~L~~a~~~~~~~n-~~~~~---------- 190 (231)
T 3q80_A 133 VPVLPLS--DTIKA----VDAN-GVVLGTPER---AGLRAVQT-PQGFTTDLLLRSYQRGSLDL-PAAEY---------- 190 (231)
T ss_dssp EEEECCS--SCEEE----ECTT-SBEEECCCG---GGEEEECS-CEEEEHHHHHHHHHHHTC------CC----------
T ss_pred EEEEecc--CCEEE----EcCC-CcEEEecch---hheEEEcC-CcEEEHHHHHHHHHHHHhhc-CCCCC----------
Confidence 6666653 33332 3555 777766542 22233444 4899987654 344332222 23444
Q ss_pred CcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHH
Q psy17795 320 DFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~ 365 (523)
+|....+...| ++..+.-+..++.|.+|+|+..+...+
T Consensus 191 --------TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 191 --------TDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp --------SSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred --------CcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 34444444445 477777777788999999998776543
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=125.16 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=51.3
Q ss_pred CCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeE
Q psy17795 428 QGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSI 506 (523)
Q Consensus 428 ~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~ 506 (523)
++|.|+.+++|. +++||++|.|++++.|.+ .++||++++||++++|.++ +.||++|+||++++|...
T Consensus 134 ~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~----------~v~Ig~~~~Ig~~~~i~~~-~~Ig~~~~igagsvv~~~- 201 (220)
T 4ea9_A 134 DLAIINTGAVVDHDCRLGAACHLGPASALAG----------GVSVGERAFLGVGARVIPG-VTIGADTIVGAGGVVVRD- 201 (220)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECS----------SCEECTTCEECTTCEECTT-CEECTTCEECTTCEECSC-
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEEcC----------CCEECCCCEECCCCEEcCC-cEECCCCEECCCCEEccc-
Confidence 444444444443 466666777777777754 3667777777777877777 677999999999999543
Q ss_pred EcCCcEeCCCCCCc
Q psy17795 507 VLPYKELTRSFKNE 520 (523)
Q Consensus 507 v~~~~~i~~~~~~~ 520 (523)
+.++.++ .+.|+.
T Consensus 202 v~~~~~~-~G~Pa~ 214 (220)
T 4ea9_A 202 LPDSVLA-IGVPAK 214 (220)
T ss_dssp BCTTCEE-ETTTTE
T ss_pred cCCCcEE-EEeCCE
Confidence 2333333 345544
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.45 E-value=8.4e-13 Score=123.11 Aligned_cols=98 Identities=11% Similarity=0.088 Sum_probs=72.6
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|.|.+|||||| .|+||+ .||+|+|++|+|||+|+++.+.+. ++++|+|++++..+.+.+++.. +++.+
T Consensus 4 ~~~~~iIlA~G--~~~R~g-----~~K~l~~~~g~pll~~~l~~l~~~-~~~~i~vv~~~~~~~~~~~~~~----~~~~~ 71 (197)
T 2wee_A 4 TQITGVVLAAG--RSNRLG-----TPKQLLPYRDTTVLGATLDVARQA-GFDQLILTLGGAASAVRAAMAL----DGTDV 71 (197)
T ss_dssp SEEEEEEEECC--CCTTTS-----SCGGGSEETTEEHHHHHHHHHHHT-TCSEEEEEECTTHHHHHHHSCC----TTSEE
T ss_pred CceEEEEECCC--CcccCC-----CCeEcCeeCCccHHHHHHHHHHhc-CCCcEEEEeCCCHHHHHHHhcc----CCCEE
Confidence 45789999999 999996 499999999999999999999986 7999999998877777776654 34444
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE 220 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~ 220 (523)
.+ .+....| ++++++ .+++....+. +++++
T Consensus 72 ~~-~~~~~~g-----------------~~~~i~~al~~~~~~~~~-vlv~~ 103 (197)
T 2wee_A 72 VV-VEDVERG-----------------CAASLRVALARVHPRATG-IVLML 103 (197)
T ss_dssp EE-CC----C-----------------CHHHHHHHHTTSCTTEEE-EEEEE
T ss_pred EE-CCCcccC-----------------HHHHHHHHHHHhcccCCe-EEEEe
Confidence 22 2223345 889998 5555312355 77776
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-13 Score=126.43 Aligned_cols=115 Identities=11% Similarity=0.122 Sum_probs=88.7
Q ss_pred CCceEec--CcEECCCCEECCCCEECCCcEECCCCEECCCCEE----eeeEECCCCEECCCCEE----------------
Q psy17795 381 SQCKTIG--DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI----KESIILQGASIGNHSLV---------------- 438 (523)
Q Consensus 381 ~~~~i~~--~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I----~~s~Ig~~~~Ig~~~~I---------------- 438 (523)
+.+.+.+ ++.|++++.|++++.|.+++.||++|.|++++.| ++++||++|.|+++|.|
T Consensus 43 ~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~ 122 (205)
T 3vbi_A 43 KKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPT 122 (205)
T ss_dssp TTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSSCCSTT
T ss_pred CCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCcccccccCcc
Confidence 5677777 7899999999999999999999999999999999 33999999999999999
Q ss_pred ----------eceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEc
Q psy17795 439 ----------LNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVL 508 (523)
Q Consensus 439 ----------~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~ 508 (523)
.+++||++|.||.+|.|.. .++|++++.||++++|. .+ |++++++.+.
T Consensus 123 ~~~~~~~~~~~~v~IG~~v~IG~~~~I~~----------gv~Ig~~~~Ig~gsvV~-------~~--v~~~~v~~G~--- 180 (205)
T 3vbi_A 123 IPNQYKNVKTGKVILKKHVIIGAHSIIFP----------NVVIGEGVAVGAMSMVK-------ES--LDDWYIYVGV--- 180 (205)
T ss_dssp SCGGGCCCEECCEEECTTCEECTTCEECS----------SCEECTTCEECTTCEEC-------SC--BCTTEEEETT---
T ss_pred cccccceeccCCEEECCCCEECCCCEEcC----------CCEECCCCEEcCCCEEC-------Cc--cCCCeEEEcc---
Confidence 3689999999999999875 35667776666665333 22 4555555332
Q ss_pred CCcEeCCCC
Q psy17795 509 PYKELTRSF 517 (523)
Q Consensus 509 ~~~~i~~~~ 517 (523)
|.+.+++..
T Consensus 181 Pa~~i~~~~ 189 (205)
T 3vbi_A 181 PVRKIKARK 189 (205)
T ss_dssp TTEEEEECC
T ss_pred CCEEeeech
Confidence 555555443
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=124.22 Aligned_cols=212 Identities=8% Similarity=0.059 Sum_probs=120.3
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe-
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI- 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~- 169 (523)
||.|.+|||||| .|+||+. ..||+|++++|+|||+|+++.+.+...+++|+|++++..+.+.+ +.. ++.
T Consensus 5 ~~~~~~iIlA~G--~g~R~~~---~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~----~~~~ 74 (236)
T 1i52_A 5 HLDVCAVVPAAG--FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPL----ANHP 74 (236)
T ss_dssp CCCEEEEEEECC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGG----GGCT
T ss_pred CCceeEEEECCc--CccccCC---CCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHh----cCCC
Confidence 567899999999 9999983 67999999999999999999999863489999999875545544 332 221
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cc-hHH---HHHHHHhcCCcceE
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IR-SDV---VILMHSLYSMAILV 239 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~-~D~---l~~~h~~~~~~~~~ 239 (523)
.+.++.+. .| ..++++ .+++. ..+. +++++ ++ .+. +++.+.+.+ +.
T Consensus 75 ~v~~~~~~--~g-----------------~~~~i~~al~~~~-~~~~-~lv~~~D~P~~~~~~i~~l~~~~~~~~--~~- 130 (236)
T 1i52_A 75 QITVVDGG--DE-----------------RADSVLAGLKAAG-DAQW-VLVHDAARPCLHQDDLARLLALSETSR--TG- 130 (236)
T ss_dssp TEEEEECC--SS-----------------HHHHHHHHHHTST-TCSE-EEECCTTCTTCCHHHHHHHHGGGGTCS--SC-
T ss_pred CEEEECCC--CC-----------------HHHHHHHHHHhcC-CCCE-EEEEcCccccCCHHHHHHHHHHHHhcC--Ce-
Confidence 34444321 23 566666 45553 1355 77766 11 222 344333322 23
Q ss_pred EEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHH-HHHHhhcccccccccccccccCCC
Q psy17795 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQ-NIAAVFQSKQDEFYNGNYMVNGKD 318 (523)
Q Consensus 240 tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~-~l~~~~~~~~~e~~~~~~~~~~~~ 318 (523)
.+++.+.. +. ....+++++++....+. ..-+...+.++|+.+.+. .+...... + ++.
T Consensus 131 ~~~~~~~~--~~----~~~~~~~~~~i~~~~~~----~~i~~~~~p~~f~~~~l~~~~~~~~~~--g-~~~--------- 188 (236)
T 1i52_A 131 GILAAPVR--DT----MKRAEPGKNAIAHTVDR----NGLWHALTPQFFPRELLHDCLTRALNE--G-ATI--------- 188 (236)
T ss_dssp EEEEEECC--SC----EEEECTTSSSEEEEECC----TTCEEEEEEEEEEHHHHHHHHHHHHHT--T-CCC---------
T ss_pred EEEEEecc--cc----EEEEcCCCCceeeccCh----HhheeeeCCceecHHHHHHHHHHHHhc--C-CCc---------
Confidence 23333432 11 11123321455443221 111112255677876553 33332111 1 111
Q ss_pred CCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 319 TDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 319 ~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
.+. ..++..+ ..++..+..++.|.+|+|++||..+...+.
T Consensus 189 -----td~-~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~ 228 (236)
T 1i52_A 189 -----TDE-ASALEYC--GFHPQLVEGRADNIKVTRPEDLALAEFYLT 228 (236)
T ss_dssp -----CSH-HHHHHHT--TCCCEEEECCTTCCCCCSHHHHHHHHHHHC
T ss_pred -----ccH-HHHHHHc--CCCEEEEecCccccccCCHHHHHHHHHHHH
Confidence 000 1233322 235777777789999999999988876554
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.5e-13 Score=123.07 Aligned_cols=96 Identities=20% Similarity=0.342 Sum_probs=79.8
Q ss_pred CCceEecCcEECCCCEECCCCEECC---CcEECCCCEECCCCEEeee------------EECCCCEECCCCEEeceEECC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGP---NVSIDDGAVIGPGVRIKES------------IILQGASIGNHSLVLNSIVGR 445 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~---~~~Ig~~~~I~~~~~I~~s------------~Ig~~~~Ig~~~~I~~~iIg~ 445 (523)
+.+.+.+++.||+++.|++++.|.+ ++.||++|.|++++.|..+ +||++|.|+++|.|.+++||+
T Consensus 30 ~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~ 109 (189)
T 3r1w_A 30 RSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGN 109 (189)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEECS
T ss_pred CCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEECC
Confidence 5677788888889999999988863 4599999999999999754 999999999999999999999
Q ss_pred CCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 446 NSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 446 ~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
+|.||.++.|.+ .++|+++++|+++++|.++
T Consensus 110 ~~~Ig~~~~i~~----------~v~Ig~~~~Ig~~s~V~~g 140 (189)
T 3r1w_A 110 RVLIGMKSMIMD----------GAIVEDEVIVAAGATVSPG 140 (189)
T ss_dssp SEEECTTCEECT----------TCEECSSCEECTTCEECTT
T ss_pred CcEECCCCEEcC----------CCEECCCCEEccCCEECCC
Confidence 999999999975 3667777776666544333
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.3e-13 Score=123.18 Aligned_cols=105 Identities=22% Similarity=0.317 Sum_probs=82.7
Q ss_pred CCceEecCcEECCCCEECCCCEECC---CcEECCCCEECCCCEEe------eeEECCCCEECCCCEEeceEECCCCEECC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGP---NVSIDDGAVIGPGVRIK------ESIILQGASIGNHSLVLNSIVGRNSKVGN 451 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~---~~~Ig~~~~I~~~~~I~------~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~ 451 (523)
+++.|.+++.|++++.|++++.|.. +++||++|.|+++|.|. +++||++|.|++++.|.+++||++|.||.
T Consensus 44 ~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~ 123 (191)
T 3ixc_A 44 GNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNAFVGM 123 (191)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTTCEECT
T ss_pred CCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCCCEECC
Confidence 4667777788888888888888853 45889999999999997 89999999999999999999999999999
Q ss_pred CcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 452 WSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 452 ~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
+|.|.+ .++|+++++|+++++| ..+..|++++++
T Consensus 124 ~~~I~~----------~~~Ig~~~~Ig~gsvV-------~~~~~i~~~~~v 157 (191)
T 3ixc_A 124 GSIVMD----------RAVMEEGSMLAAGSLL-------TRGKIVKSGELW 157 (191)
T ss_dssp TCEECT----------TCEECTTCEECTTCEE-------CTTCEECTTEEE
T ss_pred CCEEeC----------CeEECCCCEECCCCEE-------CCCcCcCCCeEE
Confidence 999975 3566666666655433 444445555554
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-12 Score=122.26 Aligned_cols=202 Identities=11% Similarity=0.094 Sum_probs=114.7
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHH-HHHHHhhhhccCeeEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADL-QKFVLDMVQEYKINIR 172 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i-~~~l~~~~~~~~~~i~ 172 (523)
|.||||||| .|+||+. ..||+|++++|+|||+|+++.+.+...+++|+|++++....+ .+++. ++..+.
T Consensus 14 ~~aiILAaG--~s~Rm~~---~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-----~~~~~~ 83 (234)
T 1vpa_A 14 NVAILLAAG--KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF-----HEKVLG 83 (234)
T ss_dssp EEEEEEECC--CCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC-----CTTEEE
T ss_pred CeEEEEcCc--chhhcCC---CCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc-----cCCceE
Confidence 569999999 9999984 679999999999999999999998623899999998755332 32221 121222
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--Hhhccc-CCcceEEEEc----cc-hH-H--HHHHHHhcCCcceEEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW-VQEAVYFTLE----IR-SD-V--VILMHSLYSMAILVTV 241 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~-~~d~~~Lvl~----i~-~D-~--l~~~h~~~~~~~~~tv 241 (523)
+... | +...++++ ...+.. ..+. +++++ ++ .+ + +++.+...+ + .+
T Consensus 84 ~~~g----g---------------~~~~~sv~~al~~~~~~~~~~-vlv~~~D~Pli~~~~i~~l~~~~~~~~--~--~i 139 (234)
T 1vpa_A 84 IVEG----G---------------DTRSQSVRSALEFLEKFSPSY-VLVHDSARPFLRKKHVSEVLRRARETG--A--AT 139 (234)
T ss_dssp EEEC----C---------------SSHHHHHHHHHHHHGGGCCSE-EEEEETTSCCCCHHHHHHHHHHHHHHS--E--EE
T ss_pred EeCC----C---------------CcHHHHHHHHHHHhhhcCCCE-EEEecCcccCCCHHHHHHHHHHHHhcC--C--EE
Confidence 2111 1 01344555 444432 2345 67765 22 22 2 556555433 3 33
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCccccee-eeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCC
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLV-NCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTD 320 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~-~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~ 320 (523)
++.+.. + +....+++ | + .+.++. .+. .-.-++|+.+.+..+.+. +++..
T Consensus 140 ~~~~~~--~----~~~~~~~~-g-v-~~~~r~-----~~~~~~~p~~f~~~~l~~~~~~------~~~~~---------- 189 (234)
T 1vpa_A 140 LALKNS--D----ALVRVEND-R-I-EYIPRK-----GVYRILTPQAFSYEILKKAHEN------GGEWA---------- 189 (234)
T ss_dssp EEEECC--S----EEEEEETT-E-E-EEECCT-----TEEEEEEEEEEEHHHHHHHHTT------CCCCS----------
T ss_pred EEEecC--C----cEEEECCC-C-c-ccCChh-----HeeeecCCccccHHHHHHHHHh------cCCCC----------
Confidence 334432 1 12223555 6 6 665431 111 112347888766544331 12110
Q ss_pred cccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 321 FNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 321 ~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
+. ..++... ...+..+..++.|.+|+|++||..+...+.
T Consensus 190 -~~----~~~~~~~--g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 228 (234)
T 1vpa_A 190 -DD----TEPVQKL--GVKIALVEGDPLCFKVTFKEDLELARIIAR 228 (234)
T ss_dssp -SS----HHHHHTT--TCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred -cH----HHHHHHc--CCcEEEEECCchhcCCCCHHHHHHHHHHHh
Confidence 00 1233221 224666677788999999999988876544
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.5e-13 Score=131.70 Aligned_cols=113 Identities=12% Similarity=0.161 Sum_probs=72.9
Q ss_pred CceEecCcEECCCCEECCCCEE-----CCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEec---------eEECCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIV-----GPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLN---------SIVGRN 446 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I-----~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~---------~iIg~~ 446 (523)
+..|.+++.|++++.|++++.| +.++.||++|.|+.+++|++ +.||++|.|+.++.|.+ ++||++
T Consensus 145 ~~~I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~ 224 (316)
T 3tk8_A 145 GFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDN 224 (316)
T ss_dssp CCEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTT
T ss_pred CcEEeCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCC
Confidence 3445555555555555555544 44555666666665555543 56666666666666654 788888
Q ss_pred CEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCC-------EECCCcEE-eCe
Q psy17795 447 SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGV-------TVPGELIV-LNS 505 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~-------~Ig~~~~i-~~~ 505 (523)
|.||.+|.|.. .++||++++||++++|.++ +.|++.+ .|++++++ .++
T Consensus 225 v~IG~~a~I~~----------gv~IG~g~vIgagsvV~~~-t~I~d~~~~~v~~g~Vp~gsvVvaGs 280 (316)
T 3tk8_A 225 CFIGARSEVVE----------GVIVEENSVISMGVYLGQS-TKIYDRETGEVTYGRIPAGSVVVAGN 280 (316)
T ss_dssp CEECTTCEECT----------TCEECTTCEECTTCEECTT-CCEEETTTCCEECSEECTTEEEEEEE
T ss_pred CEECCCCEEcC----------CCEECCCCEEcCCCEEcCC-eeecccccccccccEeCCCCEEECCC
Confidence 88888888865 4778888888888877777 5556666 77777777 443
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=129.85 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=70.0
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEec---------eEECCCCEEC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLN---------SIVGRNSKVG 450 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~---------~iIg~~~~Ig 450 (523)
+++.|.+++.|++++.|+++ .|++++.||++|.|+.+++|++ +.||++|.|+.++.|.+ ++||++|.||
T Consensus 134 p~a~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG 212 (304)
T 3eg4_A 134 PNCIVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIG 212 (304)
T ss_dssp TTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEEC
T ss_pred CCEEECCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEEC
Confidence 35566666666666666665 5666777777777777777755 67777777777777765 7778888888
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCC
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGV 494 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~ 494 (523)
++|.|.+ .++||++++||++++|.++ +.|++++
T Consensus 213 ~~a~I~~----------gv~IG~~avIgagsvV~~g-~~Igd~~ 245 (304)
T 3eg4_A 213 ARSEVVE----------GCIVREGSVLGMGVFIGKS-TKIVDRA 245 (304)
T ss_dssp TTCEECT----------TCEECTTCEECTTCEECTT-CCEEETT
T ss_pred CCCEEcC----------CcEECCCcEECCCCEEcCC-eEECccc
Confidence 7777754 3677777777777777666 4445554
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.9e-13 Score=124.60 Aligned_cols=104 Identities=16% Similarity=0.211 Sum_probs=70.5
Q ss_pred ECCCCEECC--CCEECCCcEECCCCEECCCCEEee---eEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCC
Q psy17795 391 IHSSASVHP--TAIVGPNVSIDDGAVIGPGVRIKE---SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNP 464 (523)
Q Consensus 391 i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~---s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~ 464 (523)
+++++.|.+ .+.++.++.||++|.|+.+|+|.+ ++||++|.||++|.|. .+...+......++.+.+
T Consensus 59 ig~~~~I~~p~~~~ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~------- 131 (195)
T 3nz2_A 59 LGHKSCVQPPFHCEFGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICK------- 131 (195)
T ss_dssp ECTTCEECSSEEESCSTTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEEC-------
T ss_pred cCCCcEEcCCeEEEeCCCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecC-------
Confidence 444445554 234566677777777777777643 4677777777777776 233334443344444433
Q ss_pred CCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 465 NKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 465 ~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
.++||++|+||.+++|.+| +.||++|+||+|++|...
T Consensus 132 ---~v~IG~~v~IG~~~~I~~g-v~IG~~~vIgagsvV~~d 168 (195)
T 3nz2_A 132 ---PIVIEDDVWIGGNVVINQG-VTIGARSVVAANSVVNQD 168 (195)
T ss_dssp ---CEEECTTCEECTTCEECTT-CEECTTCEECTTCEECSC
T ss_pred ---CeEECCCCEEcCCCEECCC-CEECCCCEECCCCEEccc
Confidence 5788999999999999999 677999999999999543
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=121.08 Aligned_cols=115 Identities=14% Similarity=0.147 Sum_probs=76.3
Q ss_pred CCEECCCCEE--CCCcEECCCCEECCCCEEe---eeEECCCCEECCCCEEec-eEECCCCEECCCcEEcCCCCCCCCCCC
Q psy17795 394 SASVHPTAIV--GPNVSIDDGAVIGPGVRIK---ESIILQGASIGNHSLVLN-SIVGRNSKVGNWSRVEGTPCDPNPNKA 467 (523)
Q Consensus 394 ~~~I~~~~~I--~~~~~Ig~~~~I~~~~~I~---~s~Ig~~~~Ig~~~~I~~-~iIg~~~~Ig~~~~i~~~~~~~~~~~~ 467 (523)
++.|++++.+ +.++.||+++.|+++|+|. .+.||++|.|+++|.|.. +..++.+....++.+.+
T Consensus 64 ~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~---------- 133 (190)
T 3hjj_A 64 KAQINPDFRCDYGYNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGK---------- 133 (190)
T ss_dssp CCEECSSCEESSSTTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEEC----------
T ss_pred CcEECCCEEEEeCCceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccC----------
Confidence 4444444444 5667777777777777775 357888888888888763 33333333344444433
Q ss_pred ceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 468 FAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 468 ~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
.++||++|+||.+++|.+| +.||++|+||+|++|... | |...+-.+.|+..
T Consensus 134 ~v~IG~~v~IG~~~~I~~g-v~IG~~~vIgagsvV~~d-v-p~~~v~~G~Pa~~ 184 (190)
T 3hjj_A 134 PVKIGNNVWVGGGAIINPG-VSIGDNAVIASGAVVTKD-V-PNNVVVGGNPAKV 184 (190)
T ss_dssp CEEECTTCEECTTCEECTT-CEECTTCEECTTCEECSC-B-CTTEEEETTTTEE
T ss_pred CeEECCCCEECCCCEECCC-CEECCCCEECCCCEECcc-c-CCCCEEEccCCEE
Confidence 4778888899999999999 677999999999999554 2 3334445666554
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-12 Score=122.89 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=77.7
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEec---------eEECCCCEEC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLN---------SIVGRNSKVG 450 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~---------~iIg~~~~Ig 450 (523)
+++.|.+++.|+++|.|++++.|+++++||++|.|+.++.|+ +++||++|.|++++.|.+ ++||++|.||
T Consensus 96 ~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG 175 (240)
T 3r8y_A 96 PGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIG 175 (240)
T ss_dssp TTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEEC
T ss_pred CCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEEC
Confidence 578888899999999999999998999999999999999996 699999999999999976 9999999999
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCe
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGK 482 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~ 482 (523)
.+|+|.. .++||+++.|+++++
T Consensus 176 ~~~~I~~----------~~~Ig~~~~I~~gsv 197 (240)
T 3r8y_A 176 ANVVVLE----------GVTVGKGAVVAAGAV 197 (240)
T ss_dssp TTCEECT----------TCEECTTCEECTTCE
T ss_pred CCCEECC----------CcEECCCCEECCCCE
Confidence 9999954 255666666655553
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.1e-12 Score=135.08 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=92.6
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPC 460 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~ 460 (523)
+.+.+.+++.||++|.|++++.| .+++||++|.|+++|+|.+++||++|.|++++.|.+++||++|.||++|.|.++.
T Consensus 284 p~a~i~g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~~- 361 (496)
T 3c8v_A 284 GYAVIKGDTVIGENVLVSQRAYL-DNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSE- 361 (496)
T ss_dssp TTSEEESSCEECTTCEECTTCEE-EEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEETCEECTTCEEECCS-
T ss_pred CCcEEeCCeEECCCCEECCCcEE-eceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCCcEECCCCEEeCCC-
Confidence 56777788999999999999999 8899999999999999999999999999999999999999999999999998742
Q ss_pred CCCCCCCceecCCCCeecCCCeec--CCcEEeCCCCEEC
Q psy17795 461 DPNPNKAFAKMDNPPLFNSNGKLN--PSITILGDGVTVP 497 (523)
Q Consensus 461 ~~~~~~~~v~I~~~~~ig~~~~i~--~g~~iIG~~~~Ig 497 (523)
...++||+++.||.++.|. ++ +.|++++.++
T Consensus 362 -----~~~v~IG~~a~IGagsvV~~~~~-~~I~~~s~v~ 394 (496)
T 3c8v_A 362 -----SSPLKIGDGCVVMPHTIIDLEEP-LEIPAGHLVW 394 (496)
T ss_dssp -----SSCEEECTTCEECTTCEEECSSC-EEECSSEEEC
T ss_pred -----CcceEECCCCEECCCCEEecCCC-cEeCCCCEEE
Confidence 1357888888888887665 44 4445555554
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-12 Score=136.45 Aligned_cols=141 Identities=15% Similarity=0.201 Sum_probs=103.1
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeee----------------EECCCCEECCCCEEe-ceEE
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKES----------------IILQGASIGNHSLVL-NSIV 443 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s----------------~Ig~~~~Ig~~~~I~-~~iI 443 (523)
....+.+++.|++++.|++++.+.+++.|+.+|.|++++.+.++ .+++++.|+++++|. +++|
T Consensus 276 ~~~~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i 355 (501)
T 3st8_A 276 ATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTAL 355 (501)
T ss_dssp GGEEECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEE
T ss_pred ccccccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEE
Confidence 34578889999999999999999999999999999988887663 345566666666665 6777
Q ss_pred CCCCEECCCcEEcCCCCCCCCCC------CceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eC
Q psy17795 444 GRNSKVGNWSRVEGTPCDPNPNK------AFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LN 504 (523)
Q Consensus 444 g~~~~Ig~~~~i~~~~~~~~~~~------~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~ 504 (523)
+++|.||.++.+.++.++.+..- +.+.||++|.||+++.+.. ..++||++|+||.++.| .+
T Consensus 356 ~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~ 435 (501)
T 3st8_A 356 GADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDG 435 (501)
T ss_dssp CTTCEEEETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTT
T ss_pred ccccccCCeEEEccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCC
Confidence 77777777776665554443221 2356778888887764422 12788888888888766 46
Q ss_pred eEEcCCcEeCCCCCCcc
Q psy17795 505 SIVLPYKELTRSFKNEI 521 (523)
Q Consensus 505 ~~v~~~~~i~~~~~~~~ 521 (523)
+.|+++++|++++|+..
T Consensus 436 ~~i~ags~v~~dvp~~~ 452 (501)
T 3st8_A 436 AYTGAGTVVREDVPPGA 452 (501)
T ss_dssp CEECTTCEECSCBCTTC
T ss_pred CEECCCCEECcccCCCC
Confidence 78889999999999664
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=122.60 Aligned_cols=90 Identities=12% Similarity=0.126 Sum_probs=55.0
Q ss_pred CCCcEECCCCEECCCCEEee---eEECCCCEECCCCEEece-EECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecC
Q psy17795 404 GPNVSIDDGAVIGPGVRIKE---SIILQGASIGNHSLVLNS-IVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNS 479 (523)
Q Consensus 404 ~~~~~Ig~~~~I~~~~~I~~---s~Ig~~~~Ig~~~~I~~~-iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~ 479 (523)
+.++.||++|.|+++|+|.+ ++||++|.||++|.|..+ ...+......+..+. ..++||++|+||.
T Consensus 72 g~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~----------~~v~IG~~v~IG~ 141 (199)
T 3ftt_A 72 GWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKA----------GPIHIGSNTWFGG 141 (199)
T ss_dssp STTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEE----------CCEEECSSEEECT
T ss_pred cCCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceec----------CCeEEcCCcEEcC
Confidence 45566666666666666532 466677777766666422 111111111222222 2467777888888
Q ss_pred CCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 480 NGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 480 ~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
+++|.+| +.||++|+||+|++|..
T Consensus 142 ~~~I~~g-v~IG~~~vIgagsvV~~ 165 (199)
T 3ftt_A 142 HVAVLPG-VTIGEGSVIGAGSVVTK 165 (199)
T ss_dssp TCEECTT-CEECTTCEECTTCEECS
T ss_pred CCEECCC-CEECCCCEECCCCEECc
Confidence 8888888 66799999999999944
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-11 Score=114.19 Aligned_cols=93 Identities=13% Similarity=0.212 Sum_probs=72.2
Q ss_pred CCceEecCcEEC--CCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEec-eEECCCCEECCCcEEc
Q psy17795 381 SQCKTIGDVYIH--SSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLN-SIVGRNSKVGNWSRVE 456 (523)
Q Consensus 381 ~~~~i~~~~~i~--~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~-~iIg~~~~Ig~~~~i~ 456 (523)
+++.+.+++.|+ +++.|++++.|++++.||++|.|++++.|+ ++.||++|.|++++.|.+ ++||++|.||.++.|.
T Consensus 80 ~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~ 159 (194)
T 3bfp_A 80 KSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL 159 (194)
T ss_dssp TTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEEC
Confidence 567777778888 888888888888888888888888888886 588888888888888874 8888888888888886
Q ss_pred CCCCCCCCCCCceecCCCCeecCCCee
Q psy17795 457 GTPCDPNPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 457 ~~~~~~~~~~~~v~I~~~~~ig~~~~i 483 (523)
+ .++|++++.||+++++
T Consensus 160 ~----------~~~Ig~~~~Igagsvv 176 (194)
T 3bfp_A 160 P----------NLSLADDSILGGGATL 176 (194)
T ss_dssp T----------TCEECTTCEECTTCEE
T ss_pred C----------CCEECCCCEECCCCEE
Confidence 4 3567777776666544
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.9e-12 Score=120.08 Aligned_cols=197 Identities=10% Similarity=0.077 Sum_probs=108.2
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|++.+|||||| .|+||++ . ||+|++++|+|||+|+++. . +++++|+|++++ .+.+ +.. .+ +
T Consensus 24 M~~~aiILAgG--~s~Rm~~---~-~K~l~~i~gkpli~~~l~~--~-~~~~~ivvv~~~---~~~~-~~~----~~--v 84 (236)
T 2px7_A 24 MEVSVLIPAAG--NGLRLGR---G-PKAFLQVGGRTLLEWTLAA--F-RDAAEVLVALPP---GAEP-PKG----LG--A 84 (236)
T ss_dssp CCCEEEEECCC------------C-CGGGCBCSSSBHHHHHHHH--T-TTCSEEEEEECT---TCCC-CTT----CS--C
T ss_pred CceEEEEEcCC--CCccCCC---C-CCeEEEECCEEHHHHHHHh--c-CCCCeEEEEeCH---HHHH-hhc----CC--c
Confidence 44569999999 9999986 5 9999999999999999999 4 489999999985 1212 211 22 3
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cc-hH-H--HHHHHHhcCCcceEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IR-SD-V--VILMHSLYSMAILVTV 241 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~-~D-~--l~~~h~~~~~~~~~tv 241 (523)
.++.+. .+ ..++++ ...+. .+. +++++ ++ .+ + +++.+...+ + .+
T Consensus 85 ~~~~~~--~~-----------------~~~~i~~al~~~~--~~~-vlv~~~D~P~~~~~~i~~l~~~~~~~~--~--~i 138 (236)
T 2px7_A 85 VFLEGG--AT-----------------RQASVARLLEAAS--LPL-VLVHDVARPFVSRGLVARVLEAAQRSG--A--AV 138 (236)
T ss_dssp EEEECC--SS-----------------HHHHHHHHHHHCC--SSE-EEECCTTCCCCCHHHHHHHHHHHHHHS--E--EE
T ss_pred EEEeCC--Cc-----------------hHHHHHHHHHHcC--CCe-EEEecCccccCCHHHHHHHHHHHHhcC--C--eE
Confidence 344321 12 455565 44454 355 77765 22 22 2 555555433 3 33
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHH-HHHhhcccccccccccccccCCCCC
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQN-IAAVFQSKQDEFYNGNYMVNGKDTD 320 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~-l~~~~~~~~~e~~~~~~~~~~~~~~ 320 (523)
.+.+.. ++..+ .| + |++..+.++.. ...+. ..++|+++.+.. +...... ++++.
T Consensus 139 ~~~~~~--~~~~~----~~-~-G~v~~~~~~~~---~~~~~-~~~~f~~~~l~~~~~~~~~~---g~~~~---------- 193 (236)
T 2px7_A 139 PVLPVP--DTLMA----PE-G-EAYGRVVPREA---FRLVQ-TPQGFFTALLREAHAYARRK---GLEAS---------- 193 (236)
T ss_dssp EEEECC--SEEEE----EC-S-SSCEEEECGGG---CEEEC-SCEEEEHHHHHHHHHHHHHH---TCCCS----------
T ss_pred EEEecC--CcEEE----ec-C-CeEEecCChHh---hcccc-CCeEEcHHHHHHHHHHHHhc---CCCch----------
Confidence 334432 22222 24 4 78877665421 12222 356788876543 3322111 12210
Q ss_pred cccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHH
Q psy17795 321 FNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 321 ~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~ 365 (523)
+ ...++... ...+..+..++.|.+|+||+||..+...+
T Consensus 194 ----d-~~~ll~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 231 (236)
T 2px7_A 194 ----D-DAQLVQAL--GYPVALVEGEATAFKITHPQDLVLAEALA 231 (236)
T ss_dssp ----S-HHHHHHHT--TCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred ----h-HHHHHHHc--CCcEEEEECCccccCCCCHHHHHHHHHHH
Confidence 0 12333322 23577777778999999999998876644
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-11 Score=116.75 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=78.7
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~ 458 (523)
+.+.+.+.+.|++++.|++++.|++++.||++|.|+++++|+ ++.||++|.|++++.|. +++||++|.||.+++|.+
T Consensus 104 ~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~- 182 (220)
T 4ea9_A 104 PSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIP- 182 (220)
T ss_dssp TTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECT-
T ss_pred CCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcC-
Confidence 567888888999999999999999999999999999999986 48899999999999888 499999999999999875
Q ss_pred CCCCCCCCCceecCCCCeecCCCeec
Q psy17795 459 PCDPNPNKAFAKMDNPPLFNSNGKLN 484 (523)
Q Consensus 459 ~~~~~~~~~~v~I~~~~~ig~~~~i~ 484 (523)
.++||+++.||+++++.
T Consensus 183 ---------~~~Ig~~~~igagsvv~ 199 (220)
T 4ea9_A 183 ---------GVTIGADTIVGAGGVVV 199 (220)
T ss_dssp ---------TCEECTTCEECTTCEEC
T ss_pred ---------CcEECCCCEECCCCEEc
Confidence 36777777777766443
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-12 Score=118.47 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=104.1
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCee
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~ 170 (523)
||.+.+|||||| +|+||+ .||+|+|++|+|||+|+++.+.+. +++|+|++++... +++. ++.
T Consensus 12 ~~~~~~iILA~G--~g~Rmg-----~~K~ll~i~g~pll~~~l~~l~~~--~~~i~vv~~~~~~---~~~~------~~~ 73 (201)
T 2e8b_A 12 SKVNTCYVLAGG--KSKRFG-----EDKLLYEIKGKKVIERVYETAKSV--FKEVYIVAKDREK---FSFL------NAP 73 (201)
T ss_dssp CSCCEEEEEEES--SCCCCS-----TTHHHHHHHHHHHHHHHHHHHHTT--CSEEEEEESCSGG---GGGG------TCC
T ss_pred ccCceEEEECCC--CCccCC-----CCcccceECceEHHHHHHHHHHHh--CCEEEEEeCcHHH---hhcC------Cce
Confidence 345689999999 999997 489999999999999999999974 8999999987653 1111 333
Q ss_pred EEEEec-ccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc--hHHHHH-HHHhcCCcceEEE
Q psy17795 171 IRYLQE-FWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR--SDVVIL-MHSLYSMAILVTV 241 (523)
Q Consensus 171 i~~~~~-~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~--~D~l~~-~h~~~~~~~~~tv 241 (523)
++.+ ....| ++++++ .+.+. .+. +++++ .+ .+.+.+ .. + .++++
T Consensus 74 --~v~~~~~~~g-----------------~~~~i~~al~~~~--~~~-~lv~~~D~P~i~~~~i~~~l~---~--~~~~v 126 (201)
T 2e8b_A 74 --VVLDEFEESA-----------------SIIGLYTALKHAK--EEN-VFVLSGDLPLMKKETVLYVLE---N--FKEPV 126 (201)
T ss_dssp --EEECCCSSCC-----------------HHHHHHHHHHHCS--SSE-EEEEETTCTTCCHHHHHHHHH---T--CCSSE
T ss_pred --EEecCCCCCC-----------------cHHHHHHHHHHcC--CCC-EEEEeCCcCcCCHHHHHHHHh---c--CCEEE
Confidence 3432 23345 888988 55554 356 77776 11 122333 22 2 22111
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCc
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDF 321 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~ 321 (523)
. ..+ |+ ....+|+| |++++++.+.+... .+++++
T Consensus 127 ~---------------~~~---g~-------------~~p~~giy-~~~~~~~~l~~~~~--~g~~~~------------ 160 (201)
T 2e8b_A 127 S---------------VAK---TE-------------KLHTLVGV-YSKKLLEKIEERIK--KGDYRI------------ 160 (201)
T ss_dssp E---------------EEE---SS-------------SEEEEEEE-EEGGGHHHHHHHHH--TTCCCH------------
T ss_pred E---------------ecC---Cc-------------eeeEEEEE-eChhHHHHHHHHHH--cCCchH------------
Confidence 0 001 21 24567999 99999888875432 233332
Q ss_pred ccccchhhhhhhhhcCCcEEEEEc--chhHh--hhccchhhhhccHH
Q psy17795 322 NHIQLEKEIIMPLAGSGKAYVYQT--SKWWS--QLKSAGSAIYANRH 364 (523)
Q Consensus 322 ~~~~~~~dil~~li~~g~v~~~~~--~g~w~--dIgt~~dyl~an~~ 364 (523)
.++++.+ .+..+.. .+.|. |++||+||..+...
T Consensus 161 ------~~~l~~~----~~~~~~~~~~~~~~~~dintpedl~~~~~~ 197 (201)
T 2e8b_A 161 ------WALLKDV----GYNEVEIPEELRYTLLNMNTKEDLKRILAI 197 (201)
T ss_dssp ------HHHHHHH----CCEEEECCGGGGGGGCCSCCC---------
T ss_pred ------HHHHHHC----CeEEeccccccchhhcCCCCHHHHHHHHHH
Confidence 4566543 2444444 46789 99999999776543
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-12 Score=117.58 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=65.6
Q ss_pred CCCCEECCCCE--ECCCcEECCCCEECCCCEEee---eEECCCCEECCCCEEece-EECCCCEECCCcEEcCCCCCCCCC
Q psy17795 392 HSSASVHPTAI--VGPNVSIDDGAVIGPGVRIKE---SIILQGASIGNHSLVLNS-IVGRNSKVGNWSRVEGTPCDPNPN 465 (523)
Q Consensus 392 ~~~~~I~~~~~--I~~~~~Ig~~~~I~~~~~I~~---s~Ig~~~~Ig~~~~I~~~-iIg~~~~Ig~~~~i~~~~~~~~~~ 465 (523)
++++.|.+.+. ++.++.||++|.|+.+|.|.+ +.||++|.||++|.|..+ ...+......+..+
T Consensus 59 g~~~~I~~~~~~~~g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~---------- 128 (203)
T 1krr_A 59 GENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMY---------- 128 (203)
T ss_dssp CSSCEECSCEEESCSTTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBE----------
T ss_pred CCCcEEcCCeEEEeCCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCcee----------
Confidence 33444444422 356777777777777777754 567777777776666532 11111111111111
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
...++||++|+||.+++|.+| ++||++|+||+|++|...
T Consensus 129 ~~~v~IGd~v~IG~~a~I~~g-v~IG~~~vIgagsvV~~d 167 (203)
T 1krr_A 129 SFPITIGNNVWIGSHVVINPG-VTIGDNSVIGAGSIVTKD 167 (203)
T ss_dssp ECCEEECTTCEECTTCEECTT-CEECTTCEECTTCEECSC
T ss_pred CCCcEECCCeEECCCCEEeCC-eEECCCCEECCCCEECCC
Confidence 135789999999999999999 677999999999999443
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.2e-12 Score=116.18 Aligned_cols=121 Identities=13% Similarity=0.120 Sum_probs=78.7
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|++|||||| .|+||++ .||+|++++|+|||+|+++.+.+. ++++|+|++++..+.+.+++.+.. .+..++.+
T Consensus 1 m~aiIlA~G--~s~R~~~----~~K~l~~~~g~pli~~~l~~l~~~-~~~~v~vv~~~~~~~i~~~~~~~~-~~~~~~~~ 72 (196)
T 3rsb_A 1 MDALIMAGG--KGTRMGG----VEKPLIKLCGRCLIDYVVSPLLKS-KVNNIFIATSPNTPKTKEYINSAY-KDYKNIVV 72 (196)
T ss_dssp CEEEEEC------CGGGG----SCGGGCEETTEEHHHHHHHHHHSS-SCCCEEEECCTTCHHHHHHHHHHT-TTTTEEEE
T ss_pred CEEEEECCC--CCCcCCC----CCccEEEECCEEHHHHHHHHHHHC-CCCEEEEEeCCChHHHHHHHHhhc-cCCCCEEE
Confidence 579999999 9999997 799999999999999999999986 799999999988888999887621 12224444
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cc-h-HH--HHHHHHh-----cCCcce
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IR-S-DV--VILMHSL-----YSMAIL 238 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~-~-D~--l~~~h~~-----~~~~~~ 238 (523)
+.. ...| ++++++ .+++ .+. +++++ ++ . ++ +++.+.+ .+ .+
T Consensus 73 ~~~-~~~g-----------------~~~si~~al~~~---~~~-vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~--~~ 128 (196)
T 3rsb_A 73 IDT-SGKG-----------------YIEDLNECIGYF---SEP-FLVVSSDLINLKSKIINSIVDYFYCIKAKTPD--VE 128 (196)
T ss_dssp --------------------------CCCCCTTTTTC---SSC-EEEEETTEESCCHHHHHHHHHHHHHHHTTCC----C
T ss_pred EEC-CCCC-----------------cHHHHHHHHHhC---CCC-EEEEeCCcccCCHHHHHHHHHHHHhhhcccCC--Cc
Confidence 432 2344 667777 4444 356 78876 22 2 23 6777765 44 45
Q ss_pred EEEEEEee
Q psy17795 239 VTVMATEA 246 (523)
Q Consensus 239 ~tv~~~~~ 246 (523)
..+++.+.
T Consensus 129 ~~~~~~p~ 136 (196)
T 3rsb_A 129 ALAVMIPK 136 (196)
T ss_dssp EEEEEEET
T ss_pred eEEEEEEc
Confidence 55555554
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7.5e-12 Score=124.59 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=19.5
Q ss_pred eecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 469 AKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 469 v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
++||++|+||++++|.++ ++||++|+||+|++|
T Consensus 224 ~~IGd~v~IGaga~Ilgg-v~IG~~a~IGagsvV 256 (313)
T 3q1x_A 224 PTVGDYVTIGTGAKVLGN-IIVGSHVRIGANCWI 256 (313)
T ss_dssp CEECSSCEECTTCEEESS-CEECSSEEECTTCEE
T ss_pred CEECCCCEECCCCEECCC-cEECCCCEECCCCEE
Confidence 344555555555555555 555777777777776
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=131.08 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=90.3
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCC---------------
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN--------------- 446 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~--------------- 446 (523)
.+.|++++.|++++.| +++.| .++.||++|.|+. +.|.+++||++|.||++|.|.++++..+
T Consensus 308 ~~~i~~~~~i~~~~~i-~~~~I-~~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~ 384 (451)
T 1yp2_A 308 SAPIYTQPRYLPPSKM-LDADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAK 384 (451)
T ss_dssp SSCCCCCCCCCCCEEE-EEEEE-EEEEECTTCEEEE-EEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTT
T ss_pred CCeeccCCccCCCeEE-cceEE-eCeEECCCCEEcc-eEEeccEECCCCEECCCCEEcCceEECCCCccccccccccccc
Confidence 4455556666666666 55667 5688899999986 8888999999999999999998877777
Q ss_pred ----CEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCc-----EEeCCCCEECCCcE-E-eCeEEcCCcEe
Q psy17795 447 ----SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSI-----TILGDGVTVPGELI-V-LNSIVLPYKEL 513 (523)
Q Consensus 447 ----~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~-----~iIG~~~~Ig~~~~-i-~~~~v~~~~~i 513 (523)
+.||++|.|.+ +.||++|+||+++.|..+. .+||++|+||++++ | .+++|+++++|
T Consensus 385 g~~~~~Ig~~~~i~~-----------~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~v~Ig~~a~i~agsvv 451 (451)
T 1yp2_A 385 GSVPIGIGKNCHIKR-----------AIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451 (451)
T ss_dssp TCCCSEECTTCEEES-----------EEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred CceeEEECCCCEEec-----------cEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCEEEECCCcEECCCccC
Confidence 99999999865 5778888888888777641 36788888888863 3 55666666543
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=99.26 E-value=9.5e-12 Score=118.64 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=34.0
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
.+.++||++|+||++++|.+| +.||++|+||++++|..
T Consensus 117 ~g~v~IG~~v~IG~~a~I~~g-v~IG~gavIgagsvV~~ 154 (220)
T 4hur_A 117 KGDIEIGNDVWIGRDVTIMPG-VKIGDGAIIAAEAVVTK 154 (220)
T ss_dssp CCCEEECSSCEECTTCEECTT-CEECTTCEECTTCEECS
T ss_pred cCCeEECCCcEECCCCEEeCC-CEECCCCEEcCCCEEcc
Confidence 457899999999999999999 77899999999999943
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=118.40 Aligned_cols=97 Identities=10% Similarity=0.166 Sum_probs=72.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-----eEECCCCEECCCCEEec---------eEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVLN---------SIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~~---------~iIg~~ 446 (523)
+++.|++.+.|++++.|++++.|+++++|..++.|+.+|.|.. +.||++|.|++++.|.. ++||++
T Consensus 160 ~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDn 239 (332)
T 3fsy_A 160 TGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIGKR 239 (332)
T ss_dssp TTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC---CCBCEECTT
T ss_pred CCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCCCCccceEECCC
Confidence 3456666666666666666666666666666666666666632 78999999999999974 899999
Q ss_pred CEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEE
Q psy17795 447 SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITI 489 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~i 489 (523)
|.||.+++| + ++||++|.||++++|..+..+
T Consensus 240 v~IGanAtI-g-----------VtIGd~~iIGAGSVVtkdt~I 270 (332)
T 3fsy_A 240 CLLGANSGL-G-----------ISLGDDCVVEAGLYVTAGTRV 270 (332)
T ss_dssp CEECTTCEE-C-----------SCBCSSCEECTTCEECTTCEE
T ss_pred CEECCCCEE-e-----------eEECCCCEECCCCEECCCCEE
Confidence 999999999 5 578888888888777666333
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.25 E-value=6.4e-11 Score=119.31 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=33.2
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHS 436 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~ 436 (523)
+++.|.+++.|+++|.|++++.|+ +++|+++|.|+++++|.+++|+++|.|+.++
T Consensus 76 ~~~~I~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~ 130 (334)
T 2pig_A 76 GNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDA 130 (334)
T ss_dssp TTCEEESSCEEESSCEECTTCEEE-SCEEESSCEECTTCEEESCEEESSEEECTTC
T ss_pred CCcEEeeeeeECCCcEECCCCEEE-eEEEcCCCEEeCCcEEeccEEcCCeEEecCC
Confidence 355566666666666666666664 6666777777766666665555544444443
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.5e-11 Score=111.06 Aligned_cols=105 Identities=10% Similarity=0.105 Sum_probs=60.8
Q ss_pred CCCcEECCCCEECCCCEEee---eEECCCCEECCCCEEece-EECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecC
Q psy17795 404 GPNVSIDDGAVIGPGVRIKE---SIILQGASIGNHSLVLNS-IVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNS 479 (523)
Q Consensus 404 ~~~~~Ig~~~~I~~~~~I~~---s~Ig~~~~Ig~~~~I~~~-iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~ 479 (523)
+.++.||+++.|+.+|.|.+ ..||++|.||++|.|... ...+......++.+. ..++||++|+||.
T Consensus 74 g~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~----------~~v~IG~~v~IG~ 143 (188)
T 3srt_A 74 GYNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYG----------SPVKIGDNVWIGG 143 (188)
T ss_dssp STTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEE----------CCEEECSSCEECT
T ss_pred CCCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceEC----------CCcEECCCcEEcC
Confidence 35666666666666666643 356777777776666311 111111111122221 2466777777777
Q ss_pred CCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 480 NGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 480 ~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
+++|.+| ++||++|+||+|++|...+ |...+-.+.|+.+
T Consensus 144 ~~~I~~g-v~IG~~~vIgagsvV~~dv--p~~~v~~G~Pa~v 182 (188)
T 3srt_A 144 GVIITPG-ITIGDNVVIGAGSVVTKDI--PPNTVAVGNPCRV 182 (188)
T ss_dssp TCEECTT-CEECSSEEECTTCEECSCB--CSSEEEETTTTEE
T ss_pred CCEECCC-cEECCCCEECCCCEECccc--CCCCEEEccCCEE
Confidence 8888888 6779999999999995542 3333334555443
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-11 Score=124.59 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=130.7
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC---CcchHHHHHHHHhcCC-------C------ccEEEEEccCChHHH
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA---GLPMIQHHIEACVQVP-------N------LKEIIILGYYPSADL 156 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~---g~pli~~~l~~~~~~~-------g------~~~i~vv~~~~~~~i 156 (523)
+|.+|+|||| .||||+. ..||+|+||+ |+|+|++.++.+.... | +..+++.+.+..+.+
T Consensus 103 kvavvlLaGG--~GTRLg~---~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 103 EVAVLLMAGG--QGTRLGS---SAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp CEEEEEEEES--BCGGGTC---SSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CeEEEEEcCC--ccccCCC---CCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 4779999999 9999964 8999999999 9999999999998641 4 778888888888899
Q ss_pred HHHHHhhhhccCe---eEEEEeccc-c-cchh--hhhcc--ccccccc-CCCchhHHH-H-------hhcccCCcceEEE
Q psy17795 157 QKFVLDMVQEYKI---NIRYLQEFW-D-IIHQ--QICIS--LYWTWYR-NTRSTYGIY-R-------NSLHWVQEAVYFT 218 (523)
Q Consensus 157 ~~~l~~~~~~~~~---~i~~~~~~~-~-~g~~--~~~~~--~~~~~~~-g~~ta~al~-~-------~~i~~~~d~~~Lv 218 (523)
++||++. ..+++ .|.+..|.. | ...+ +...+ ....|+. | +|+.+. . ++....-++ +.+
T Consensus 178 ~~~~~~~-~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G--~Ggi~~aL~~sG~Ld~l~~~G~~y-i~v 253 (486)
T 2yqc_A 178 ESFFIEN-NYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDG--NGGLYKALKDNGILDDLNSKGIKH-IHM 253 (486)
T ss_dssp HHHHHHT-GGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECC--GGGHHHHHHHTTHHHHHHHHTCCE-EEE
T ss_pred HHHHhhc-cccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCC--chHHHHHHHHcCcHHHHHhcCCeE-EEE
Confidence 9999873 44665 455554431 1 1100 00000 1123444 6 777765 1 122222355 555
Q ss_pred Ec-----c-chHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcC-CCC--cEEEEeecCCC------------c
Q psy17795 219 LE-----I-RSDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQ-QTS--EISHYVEKPST------------F 276 (523)
Q Consensus 219 l~-----i-~~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~-~~~--~V~~~~ekp~~------------~ 276 (523)
.+ . ..|. ++.+|...+ +++++.+.+... .....|.+.... + | +|++|.|+|.. .
T Consensus 254 ~~vDN~l~~~~Dp~~lg~~~~~~--~~~~~~vv~k~~-~~e~~Gvl~~~~~d-g~~~vvEy~E~~~~~~~~~~~~~~~~~ 329 (486)
T 2yqc_A 254 YCVDNCLVKVADPIFIGFAIAKK--FDLATKVVRKRD-ANESVGLIVLDQDN-QKPCVIEYSEISQELANKKDPQDSSKL 329 (486)
T ss_dssp EETTBTTCCTTCHHHHHHHHHHT--CSEEEEEEECCS-TTCCCCEEEEETTT-TEEEEECGGGSCHHHHHCEETTEEEEE
T ss_pred ECCCCceeeccCHHHHHHHHHcC--CCEEEEEEEcCC-CCCceeEEEEEecC-CCEEEEEEecCCHHHhhcccccccccc
Confidence 54 2 3576 889999888 898888776532 225788887542 2 4 58888888742 1
Q ss_pred ccceeeeeEEEeeHHHHHH-HHH
Q psy17795 277 VSTLVNCGVYLFSLDIFQN-IAA 298 (523)
Q Consensus 277 ~~~l~~~Giyif~~~il~~-l~~ 298 (523)
..+..|+++|+|+.++++. +.+
T Consensus 330 ~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 330 FLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp SSCEEEEEEEEEEHHHHHHHHHH
T ss_pred cccceeEEEEEEeHHHHHHHHHh
Confidence 2468899999999999887 554
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=123.69 Aligned_cols=148 Identities=18% Similarity=0.166 Sum_probs=82.1
Q ss_pred cchhHhhhcc--chhhhhccHHHHhhh--c-----ccCCcccccCCCceE-ecCcEECCCCEECCCCEECCCcEECCC-C
Q psy17795 345 TSKWWSQLKS--AGSAIYANRHYLQLY--K-----TRHPERLQCSSQCKT-IGDVYIHSSASVHPTAIVGPNVSIDDG-A 413 (523)
Q Consensus 345 ~~g~w~dIgt--~~dyl~an~~~l~~~--~-----~~~~~~~~~~~~~~i-~~~~~i~~~~~I~~~~~I~~~~~Ig~~-~ 413 (523)
...+|.+.+. +.+|......+...- . ...|.... ..+ ..++.|++++.|++++.|+++++|+++ |
T Consensus 168 ~~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~~----~v~p~~gv~I~p~a~I~~~a~IG~gv~Ig~g~a 243 (387)
T 2rij_A 168 SNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLA----HIIPEDNTRILESSKVRMGASLAAGTTIMPGAS 243 (387)
T ss_dssp CCEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGGG----TCCCCTTCEESCGGGBBTTCBCCTTCEECSSSC
T ss_pred ceeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchhc----cccCCCCEEEcCCCEECCCeEEcCCCEEeCCee
Confidence 4578888888 456655555444211 0 01111110 000 123444444444444444444444443 4
Q ss_pred EECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCC
Q psy17795 414 VIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGD 492 (523)
Q Consensus 414 ~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~ 492 (523)
.|+.++. +||+ |.|+. +|. +++||++|.|++++.|.+...+ .....++||++|+||++++ +| ++||+
T Consensus 244 ~Ig~nv~----vIG~-~~I~~--~Ig~~vvIGdnv~Ig~ga~I~g~l~g--~~~~~VvIGdnv~IGagAv--~G-V~IGd 311 (387)
T 2rij_A 244 YVNFNAG----TTGA-CMVEG--RISSSAIVGEGSDVGGGASILGVLSG--TSGNAISVGKACLLGANSV--TG-IPLGD 311 (387)
T ss_dssp EECTTCE----ESSC-CEECS--EECTTCEECTTCEECTTCEECCBCSS--TTCCBCEECTTCEECTTCE--EC-SCBCT
T ss_pred EECCCcE----EECC-EEEee--EECCCCEECCCCEECCCceEcceecC--CCccCeEEeCCCEECCCCc--CC-cEECC
Confidence 4444443 1333 44432 333 5677777888888776542111 1234589999999999998 67 67799
Q ss_pred CCEECCCcEE-eCeEEc
Q psy17795 493 GVTVPGELIV-LNSIVL 508 (523)
Q Consensus 493 ~~~Ig~~~~i-~~~~v~ 508 (523)
+|+||+|++| .+..++
T Consensus 312 gavIGAGsVVt~dv~i~ 328 (387)
T 2rij_A 312 NCIVDAGIAVLEGTKFL 328 (387)
T ss_dssp TCEECTTCEECTTCEEE
T ss_pred CCEECCCCEECCCceee
Confidence 9999999999 555554
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.22 E-value=4e-11 Score=112.23 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=65.8
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|.|.+|||||| +|+||++ ||+|++++|+|||+|+++.+.+. +++||+++..+.+.+++. .++
T Consensus 1 M~~~~iIlAgG--~g~Rmg~-----~K~l~~i~g~pll~~~l~~l~~~----~ivvv~~~~~~~~~~~~~-----~~~-- 62 (197)
T 3d5n_A 1 MNIGVIILAAG--EGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDL----EKIIIVGKYVNEMLPLLM-----DQI-- 62 (197)
T ss_dssp CCEEEEEECSC--CTTCCCS-----SGGGSBSSSSBHHHHHHHHTTTS----BCCEEECTTHHHHGGGCT-----TSC--
T ss_pred CceEEEEECCc--CcccCCC-----CeeeCEeCceEHHHHHHHHHHhC----CEEEEECCCHHHHHHHhc-----CCE--
Confidence 44789999999 9999985 99999999999999999999863 788888876555544332 233
Q ss_pred EEEec-ccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc
Q psy17795 172 RYLQE-FWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE 220 (523)
Q Consensus 172 ~~~~~-~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~ 220 (523)
++.+ ....| ++++++ .+++.. .+. +++++
T Consensus 63 -~v~~~~~~~G-----------------~~~si~~al~~~~~-~~~-vlv~~ 94 (197)
T 3d5n_A 63 -VIYNPFWNEG-----------------ISTSLKLGLRFFKD-YDA-VLVAL 94 (197)
T ss_dssp -EEECTTGGGC-----------------HHHHHHHHHHHTTT-SSE-EEEEE
T ss_pred -EEECCCCCCC-----------------HHHHHHHHHHhhcc-CCc-EEEEe
Confidence 3332 22244 888888 555542 255 77776
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.5e-11 Score=123.63 Aligned_cols=192 Identities=12% Similarity=0.072 Sum_probs=127.0
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC-CcchHHHHHHHHhcCCC------ccEEEEEccCChHHHHHHHH-hhh
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA-GLPMIQHHIEACVQVPN------LKEIIILGYYPSADLQKFVL-DMV 164 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~-g~pli~~~l~~~~~~~g------~~~i~vv~~~~~~~i~~~l~-~~~ 164 (523)
++.+|||||| .||||+. ..||+|+|++ |+|+|++.++++.+. + +.-+++...+..+.+++||+ +.
T Consensus 75 k~avViLAGG--lGTRLg~---~~PK~llpV~~gk~fLe~~ie~l~~~-~~~~g~~ip~viMtS~~t~e~t~~~f~~~~- 147 (505)
T 2oeg_A 75 STVVLKLNGG--LGTGMGL---CDAKTLLEVKDGKTFLDFTALQVQYL-RQHCSEHLRFMLMDSFNTSASTKSFLKARY- 147 (505)
T ss_dssp TEEEEEEECC--CCGGGTC---CSCGGGSEEETTEEHHHHHHHHHHHH-HHHTCTTCEEEEEECHHHHHHHHHHHHHHC-
T ss_pred cceEEEEcCC--cccccCC---CCCCcccccCCCCcHHHHHHHHHHHH-HHhcCCCcCEEEEeCCCCHHHHHHHHhhhh-
Confidence 5789999999 9999995 8999999999 999999999999875 4 33344555557889999998 63
Q ss_pred hccCe---eEE-EEeccccc-chhh-hhc----cccccccc-CCCchhHHH-H------h-hcccCCcceEEEEc--cc-
Q psy17795 165 QEYKI---NIR-YLQEFWDI-IHQQ-ICI----SLYWTWYR-NTRSTYGIY-R------N-SLHWVQEAVYFTLE--IR- 222 (523)
Q Consensus 165 ~~~~~---~i~-~~~~~~~~-g~~~-~~~----~~~~~~~~-g~~ta~al~-~------~-~i~~~~d~~~Lvl~--i~- 222 (523)
..|++ +|. |.++..|. ..+. ..+ .....|+. | +|+++. . + ++....++ ++|+| .+
T Consensus 148 ~~fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G--~Gg~~~aL~~sGlL~~l~~~G~e~-i~V~N~DNL~ 224 (505)
T 2oeg_A 148 PWLYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPG--HGDIYTALYGSGKLQELVEQGYRY-MFVSNGDNLG 224 (505)
T ss_dssp HHHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCC--TTHHHHHHHHTTHHHHHHHTTCCE-EEEECTTCTT
T ss_pred hccCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCC--chHHHHHHHhcChHHHHHhcCCCE-EEEEECCccc
Confidence 44665 454 43332332 0000 000 11134555 6 888876 2 2 23222467 88888 22
Q ss_pred --hHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEc------CCCCc---------EEEEeecCCC--------c
Q psy17795 223 --SDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRK------QQTSE---------ISHYVEKPST--------F 276 (523)
Q Consensus 223 --~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d------~~~~~---------V~~~~ekp~~--------~ 276 (523)
.|. ++.+|.+.+ +++++.+.+.... ...+|++..+ .+ |+ ++++.|-|.+ .
T Consensus 225 ~~~D~~llg~~~~~~--ad~~~~v~~k~~~-d~~~Gvl~~~~~~~~~~d-g~~nvEyn~~~llEyse~p~e~~~~~~g~~ 300 (505)
T 2oeg_A 225 ATIDKRVLAYMEKEK--IDFLMEVCRRTES-DKKGGHLARQTVYVKGKD-GQPDAEKRVLLLRESAQCPKADMESFQDIN 300 (505)
T ss_dssp CCCCHHHHHHHHHHT--CSEEEEEEECCTT-CCSSEEEEEEEEEECCSS-SCCCEEEEEEEEEEGGGSCGGGHHHHHCTT
T ss_pred cccCHHHHHHHHhcC--CcEEEEEEEecCC-ccceeEEEEecccccccC-CccccccCceeEEEeccCChhhhhcccCcc
Confidence 366 889999988 9999988876432 2468887763 34 67 4454454542 1
Q ss_pred ccceeeeeEEEeeHHHHHHHHH
Q psy17795 277 VSTLVNCGVYLFSLDIFQNIAA 298 (523)
Q Consensus 277 ~~~l~~~Giyif~~~il~~l~~ 298 (523)
...+.|+...+|+-+.+..+.+
T Consensus 301 ~f~~~Ninn~~~~l~~l~~~~~ 322 (505)
T 2oeg_A 301 KYSFFNTNNLWIRLPVLLETMQ 322 (505)
T ss_dssp TTCEEEEEEEEEEHHHHHHHHH
T ss_pred ccCeeEEEEEEEEHHHHHHHHh
Confidence 2345799999999888776544
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-11 Score=110.05 Aligned_cols=107 Identities=12% Similarity=0.081 Sum_probs=62.9
Q ss_pred ECCCcEECCCCEECCCCEEe---eeEECCCCEECCCCEEeceEE-CCCCEECCCcEEcCCCCCCCCCCCceecCCCCeec
Q psy17795 403 VGPNVSIDDGAVIGPGVRIK---ESIILQGASIGNHSLVLNSIV-GRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFN 478 (523)
Q Consensus 403 I~~~~~Ig~~~~I~~~~~I~---~s~Ig~~~~Ig~~~~I~~~iI-g~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig 478 (523)
++.++.||++|.|++++.|. .+.||++|.|+++|.|....- .+...-..+.. ....++||++|+||
T Consensus 69 ~g~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~----------~~~~v~IG~~v~Ig 138 (182)
T 1ocx_A 69 YGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAE----------LGKPVTIGNNVWIG 138 (182)
T ss_dssp SSTTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCB----------EECCEEECTTCEEC
T ss_pred eCCCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCcc----------ccCCeEEeCCeEEC
Confidence 34566666666666666663 245666666666655542100 00000000000 02357778888888
Q ss_pred CCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCccc
Q psy17795 479 SNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEIL 522 (523)
Q Consensus 479 ~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~i 522 (523)
.+++|.+| +.||++|+||+|++|... |.+++++ .+.|+..|
T Consensus 139 ~~a~I~~g-v~IG~~~vIgagsvV~~d-ip~~~vv-~G~Pa~~i 179 (182)
T 1ocx_A 139 GRAVINPG-VTIGDNVVVASGAVVTKD-VPDNVVV-GGNPARII 179 (182)
T ss_dssp TTCEECTT-CEECTTCEECTTCEECSC-BCSSEEE-ETTTTEEE
T ss_pred CCCEECCC-cEECCCCEECCCCEECCc-CCCCcEE-EccccEEe
Confidence 88888888 677999999999999554 4555444 46676543
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.6e-11 Score=116.31 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=82.6
Q ss_pred CCcEECCCCEECCCCEE-----eeeEECCCCEECCCCEEe---ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCe
Q psy17795 405 PNVSIDDGAVIGPGVRI-----KESIILQGASIGNHSLVL---NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPL 476 (523)
Q Consensus 405 ~~~~Ig~~~~I~~~~~I-----~~s~Ig~~~~Ig~~~~I~---~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ 476 (523)
.++.|++++.|...+.+ ..+.||++|.|++++.|. ++.||++|.|++++.|.+. ...+.||++|.
T Consensus 62 ~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~-------~~~~~IG~~~~ 134 (252)
T 3jqy_B 62 NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTD-------KCNVTIGHDCM 134 (252)
T ss_dssp CEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECS-------SSEEEECTTCE
T ss_pred CEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeC-------CCCeEECCCCE
Confidence 56788888888777776 347889999999988885 7899999999999999742 22578888888
Q ss_pred ecCCCeecCC------------------cEEeCCCCEECCCcEE-------eCeEEcCCcEeCCCCCCcc
Q psy17795 477 FNSNGKLNPS------------------ITILGDGVTVPGELIV-------LNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 477 ig~~~~i~~g------------------~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~~~~~~~~ 521 (523)
||.++.|... .++||++|.||++++| .+++|+++++|++++|+..
T Consensus 135 Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~vp~~~ 204 (252)
T 3jqy_B 135 IARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSMC 204 (252)
T ss_dssp ECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred EcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEECcccCCCC
Confidence 8888765443 1466777777766655 4677778888888887544
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.1e-11 Score=118.19 Aligned_cols=93 Identities=11% Similarity=0.122 Sum_probs=64.2
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-----eEECCCCEECCCCEEec---------eEECCCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVLN---------SIVGRNS 447 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~~---------~iIg~~~ 447 (523)
+..|++.+.|++++.|++++.|+++++|+.++.|+++|.|.. ++||++|.|+++|.|.. ++||++|
T Consensus 184 gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv 263 (347)
T 3r5d_A 184 GVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGC 263 (347)
T ss_dssp TEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC------CCCCEECTTC
T ss_pred CcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCCCCccceEECCCC
Confidence 455566656666666666655555555555555555555532 88999999999999974 8999999
Q ss_pred EECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 448 KVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 448 ~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
.||.+++| + ++||++|.||++++|..+
T Consensus 264 ~IGAnAtI-G-----------VtIGd~~iIGAGSVVtkd 290 (347)
T 3r5d_A 264 LIGANAGI-G-----------IPLGDRNIVEAGLYITAG 290 (347)
T ss_dssp EECTTCEE-C-----------SCBCTTCEECTTCEECTT
T ss_pred EECCCCEE-e-----------eEECCCCEECCCCEECCC
Confidence 99999999 5 467777666555544444
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=108.41 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=49.7
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChH
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSA 154 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~ 154 (523)
||+|.+|||||| +|+||+ ..||+|++++|+|||+|+++.+.. ++++|+|++++..+
T Consensus 4 mm~~~~iILAgG--~s~Rmg----~~~K~ll~i~G~pli~~~l~~l~~--~~~~ivvv~~~~~~ 59 (201)
T 1e5k_A 4 MTTITGVVLAGG--KARRMG----GVDKGLLELNGKPLWQHVADALMT--QLSHVVVNANRHQE 59 (201)
T ss_dssp CCSEEEEEECCC--CCSSSC----SSCGGGSEETTEEHHHHHHHHHHH--HCSCEEEECSSSHH
T ss_pred CCcceEEEEcCC--CCCcCC----CCCCceeeECceeHHHHHHHHHHh--hCCEEEEEcCCcHH
Confidence 567899999999 999997 259999999999999999999984 68999999988653
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.17 E-value=6e-10 Score=114.04 Aligned_cols=191 Identities=12% Similarity=0.110 Sum_probs=130.0
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCccccee---CCcchHHHHHHHHhc------------CCCccEEEEEccCChHHHHH
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPV---AGLPMIQHHIEACVQ------------VPNLKEIIILGYYPSADLQK 158 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i---~g~pli~~~l~~~~~------------~~g~~~i~vv~~~~~~~i~~ 158 (523)
+.+|+|||| .||||+. ..||+|+|| .|+|++++.++.+.+ ..++..+++...+..+.+++
T Consensus 36 vavvlLAGG--~GTRLG~---~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~~ 110 (405)
T 3oc9_A 36 TALITPAGG--QGSRLGF---EHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEINN 110 (405)
T ss_dssp EEEEEECCS--BCTTTTC---CSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHHH
T ss_pred eEEEEecCC--CcccccC---CCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHHH
Confidence 458899999 9999976 899999999 899999999988853 13777777777888899999
Q ss_pred HHHhhhhccCe---eEEEEeccc-cc--chhhhhc--cccccccc-CCCchhHHH-------Hhhcc-cCCcceEEEEc-
Q psy17795 159 FVLDMVQEYKI---NIRYLQEFW-DI--IHQQICI--SLYWTWYR-NTRSTYGIY-------RNSLH-WVQEAVYFTLE- 220 (523)
Q Consensus 159 ~l~~~~~~~~~---~i~~~~~~~-~~--g~~~~~~--~~~~~~~~-g~~ta~al~-------~~~i~-~~~d~~~Lvl~- 220 (523)
||++. ..+++ +|.+..|.. |. -+.+... .....|+. | +++... .+.+. ..-++ +++.+
T Consensus 111 ~f~~~-~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~G--hGgi~~aL~~sG~Ld~l~~~Giey-i~v~nv 186 (405)
T 3oc9_A 111 YFKEH-QYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNG--HGGLFKALKDNGILEFMNEKGIKY-SVAHNV 186 (405)
T ss_dssp HHHHT-GGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECC--GGGHHHHHHHTTHHHHHHHHTCCE-EEEECT
T ss_pred HHHhC-cccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCC--ChHHHHHHHHCCcHHHHHhcCCEE-EEEEeC
Confidence 99984 45666 476665521 10 0000000 01124554 5 677665 12122 23456 77766
Q ss_pred --cc---hHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE-cCCCCcEEEEeecCCC---------cccceeeee
Q psy17795 221 --IR---SDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR-KQQTSEISHYVEKPST---------FVSTLVNCG 284 (523)
Q Consensus 221 --i~---~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~-d~~~~~V~~~~ekp~~---------~~~~l~~~G 284 (523)
.+ .|. ++.+|.+++ +++++-+.+.... ..+.|.+.. |.. .+|+++.|.|.+ ...+..|++
T Consensus 187 DN~L~~~~Dp~~lg~~~~~~--~d~~~kvv~k~~~-dek~Gvl~~~dg~-~~vvEysei~~e~e~~~~~g~l~fn~~Ni~ 262 (405)
T 3oc9_A 187 DNILCKDVDPNMIGYMDLLQ--SEICIKIVKKGFK-EEKVGVLVKEQER-IKVVEYTELTDELNKQLSNGEFIYNCGHIS 262 (405)
T ss_dssp TBTTCCSSCHHHHHHHHHTT--CSEEEEEEECCST-TCSCCEEEEETTE-EEEECGGGCCTTTTCBCTTSCBSSCEEEEE
T ss_pred CCcccccCCHHHHHHHHHcC--CCEEEEEEECCCC-CCccceEEEECCe-eEEEEEeeCCHHHhhcCCCCceeeccceeE
Confidence 12 344 899999988 9988888775422 267898874 533 478888887653 124568999
Q ss_pred EEEeeHHHHHHHH
Q psy17795 285 VYLFSLDIFQNIA 297 (523)
Q Consensus 285 iyif~~~il~~l~ 297 (523)
+++|+.++++.+.
T Consensus 263 ~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 263 INGYSTSFLEKAA 275 (405)
T ss_dssp EEEEEHHHHHHHT
T ss_pred eeecCHHHHHHhh
Confidence 9999999988765
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=99.17 E-value=6.3e-11 Score=109.72 Aligned_cols=105 Identities=12% Similarity=0.093 Sum_probs=59.3
Q ss_pred ECCCcEECCCCEECCCCEEe---eeEECCCCEECCCCEEeceEE-CCCCEECCCcEEcCCCCCCCCCCCceecCCCCeec
Q psy17795 403 VGPNVSIDDGAVIGPGVRIK---ESIILQGASIGNHSLVLNSIV-GRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFN 478 (523)
Q Consensus 403 I~~~~~Ig~~~~I~~~~~I~---~s~Ig~~~~Ig~~~~I~~~iI-g~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig 478 (523)
++.++.||+++.|+.+++|. .+.||++|.|+++|.|....- .+......+..+ ...++||++|+||
T Consensus 71 ~g~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~----------~~~v~IGd~v~IG 140 (185)
T 2p2o_A 71 YGYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEY----------GKPVVIGHNVWIG 140 (185)
T ss_dssp CSTTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBE----------ECCEEECSSCEEC
T ss_pred ecCCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccc----------cCCeEEcCCeEEC
Confidence 34566666666666666663 355666666666666642100 000000000011 1246777777777
Q ss_pred CCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCc
Q psy17795 479 SNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 479 ~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~ 520 (523)
.+++|.+| ++||++|+||+|++|... |.+++++. +.|+.
T Consensus 141 ~~~~I~~g-v~IG~~~vIgagsvV~~~-vp~~~vv~-G~Pa~ 179 (185)
T 2p2o_A 141 GRAVINPG-VTIGDNAVIASGAVVTKD-VPANAVVG-GNPAK 179 (185)
T ss_dssp TTCEECTT-CEECTTCEECTTCEECSC-BCTTEEEE-ETTEE
T ss_pred CCCEECCC-CEECCCCEECCCCEECCC-CCCCcEEE-cccCE
Confidence 78877777 667999999999998544 44444443 44543
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=116.65 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=53.0
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHH
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQK 158 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~ 158 (523)
||+|.+|||||| .|+||+. ..||+|++++|+|||+|+++.+.+.+++++|+|+++ ..+.+.+
T Consensus 1 Mmki~aIILAaG--~ssRmg~---~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~ 62 (371)
T 1w55_A 1 MSEMSLIMLAAG--NSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NITYMKK 62 (371)
T ss_dssp -CCEEEEEECCS--CCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CHHHHHT
T ss_pred CCccEEEEECCC--CCccCCC---CCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-CHHHHHH
Confidence 567889999999 9999984 689999999999999999999998558999999998 5544433
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-10 Score=112.12 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=16.6
Q ss_pred ecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 470 KMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 470 ~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
+||++|+||++++|.++ ++||++|+||+|++|
T Consensus 218 ~IGd~v~IGaga~Il~g-v~IG~~a~IGagsvV 249 (287)
T 3mc4_A 218 KIRQGVLIGAGAKILGN-IQVGQCSKIAAGSVV 249 (287)
T ss_dssp EECTTCEECTTCEEESS-CEECTTCEECTTCEE
T ss_pred EECCCCEECCCCEECCC-cEECCCCEECCCCEE
Confidence 33334444444444444 555666666666666
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.09 E-value=5e-10 Score=111.19 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=28.1
Q ss_pred ceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEe
Q psy17795 468 FAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKEL 513 (523)
Q Consensus 468 ~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i 513 (523)
+++||++|+||++++|.++ ++||++|+||+|++|... |.+++++
T Consensus 251 ~~~IGd~V~IGaga~Il~g-v~IGd~a~IGagsvV~~d-Vp~~svv 294 (310)
T 3f1x_A 251 HPILEDDVIVYSNATILGR-VTIGKGATVGGNIWVTEN-VPAGSRI 294 (310)
T ss_dssp SCEECTTCEECTTCEEESS-CEECTTCEECSSCEECSC-BCTTCEE
T ss_pred CCEECCCcEEcCCCEECCC-cEECCCCEECCCCEECCc-cCCCcEE
Confidence 3455566666666666666 667888888888888533 3444444
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.4e-10 Score=105.47 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=74.3
Q ss_pred eEecC---cEECCCCEECCCCEEC---CCcEECCCCEECCCCEE----eeeEECCCCEECCCCEEec-------------
Q psy17795 384 KTIGD---VYIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRI----KESIILQGASIGNHSLVLN------------- 440 (523)
Q Consensus 384 ~i~~~---~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I----~~s~Ig~~~~Ig~~~~I~~------------- 440 (523)
.+.++ +.|++++.|++++.|. .++.||++|.|++.+.+ .+++||++|.|+++|+|.+
T Consensus 51 ~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~ 130 (215)
T 2wlg_A 51 RLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGE 130 (215)
T ss_dssp EEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCB
T ss_pred EEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccc
Confidence 45453 8889999999888885 34999999999996665 5689999999999999985
Q ss_pred -------eEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecC
Q psy17795 441 -------SIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNP 485 (523)
Q Consensus 441 -------~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~ 485 (523)
++||++|.||.+++|.+ .++||+++.|++++++..
T Consensus 131 ~~~~~~~v~Igd~v~IG~~~~I~~----------gv~Ig~~~vIgagsvV~~ 172 (215)
T 2wlg_A 131 RINHGKDVIIGNHVWLGRNVTILK----------GVCIPNNVVVGSHTVLYK 172 (215)
T ss_dssp BCCCCCCEEECTTCEECTTCEECT----------TCEECSSCEECTTCEECS
T ss_pred cccCCCCeEECCCcEECCCCEECC----------CCEECCCCEECCCCEEcC
Confidence 48999999999999875 367788877777775554
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-10 Score=104.67 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=55.6
Q ss_pred eEecCcEECCCCEECCCCEE--CCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCC
Q psy17795 384 KTIGDVYIHSSASVHPTAIV--GPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTP 459 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I--~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~ 459 (523)
.++.++.||++++|++++.| +..++||++|.|+++|.|.. +...+......++.+. .++||++|.||.+|+|.+
T Consensus 72 ~ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~-- 149 (195)
T 3nz2_A 72 EFGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQ-- 149 (195)
T ss_dssp SCSTTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECT--
T ss_pred EeCCCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECC--
Confidence 34445666666666666666 23456666666666666643 3344444444445554 688888888888888865
Q ss_pred CCCCCCCCceecCCCCeecCCCee
Q psy17795 460 CDPNPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 460 ~~~~~~~~~v~I~~~~~ig~~~~i 483 (523)
.++||+++.||++++|
T Consensus 150 --------gv~IG~~~vIgagsvV 165 (195)
T 3nz2_A 150 --------GVTIGARSVVAANSVV 165 (195)
T ss_dssp --------TCEECTTCEECTTCEE
T ss_pred --------CCEECCCCEECCCCEE
Confidence 3667777666666543
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-09 Score=106.09 Aligned_cols=74 Identities=28% Similarity=0.309 Sum_probs=39.2
Q ss_pred CceEecCcEECCCCEEC--CCCEECCCcEECCCCEECCCCEEee---------eEECCCCEECCCCEEe-ceEECCCCEE
Q psy17795 382 QCKTIGDVYIHSSASVH--PTAIVGPNVSIDDGAVIGPGVRIKE---------SIILQGASIGNHSLVL-NSIVGRNSKV 449 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~--~~~~I~~~~~Ig~~~~I~~~~~I~~---------s~Ig~~~~Ig~~~~I~-~~iIg~~~~I 449 (523)
+..|++++.||++++|+ .+++|++++.||++|.|+++++|+. ++||++|.||.+|+|. +++||++|.|
T Consensus 164 gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~a~I 243 (287)
T 3mc4_A 164 QTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKI 243 (287)
T ss_dssp CCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTTCEE
T ss_pred CeEECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCCCEE
Confidence 45566666666666665 4556666666666666666655543 2444444444444443 3444444444
Q ss_pred CCCcEE
Q psy17795 450 GNWSRV 455 (523)
Q Consensus 450 g~~~~i 455 (523)
|++++|
T Consensus 244 GagsvV 249 (287)
T 3mc4_A 244 AAGSVV 249 (287)
T ss_dssp CTTCEE
T ss_pred CCCCEE
Confidence 444444
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=101.42 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=47.9
Q ss_pred cCcEECCCCEECCCCEECC--CcEECCCCEECCCCEEee-eEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCC
Q psy17795 387 GDVYIHSSASVHPTAIVGP--NVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDP 462 (523)
Q Consensus 387 ~~~~i~~~~~I~~~~~I~~--~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~ 462 (523)
.++.||++++|++++.|.. .+.||++|.|+++|.|.+ +..++.+....++.+. .++||++|.||.+|+|.+
T Consensus 77 ~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~----- 151 (190)
T 3hjj_A 77 YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINP----- 151 (190)
T ss_dssp TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECT-----
T ss_pred CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECC-----
Confidence 3445555555555555542 445555555555555533 2233333333444444 577888888888888865
Q ss_pred CCCCCceecCCCCeecCCCee
Q psy17795 463 NPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 463 ~~~~~~v~I~~~~~ig~~~~i 483 (523)
.++||+++.||++++|
T Consensus 152 -----gv~IG~~~vIgagsvV 167 (190)
T 3hjj_A 152 -----GVSIGDNAVIASGAVV 167 (190)
T ss_dssp -----TCEECTTCEECTTCEE
T ss_pred -----CCEECCCCEECCCCEE
Confidence 3566666666666543
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-10 Score=107.63 Aligned_cols=13 Identities=38% Similarity=0.286 Sum_probs=6.0
Q ss_pred EECCCCEECCCCE
Q psy17795 425 IILQGASIGNHSL 437 (523)
Q Consensus 425 ~Ig~~~~Ig~~~~ 437 (523)
+||++|.|+++++
T Consensus 68 ~IG~~~~Ig~~v~ 80 (220)
T 4hur_A 68 IIGRFCSIGPGTT 80 (220)
T ss_dssp EECSSCEECTTCE
T ss_pred EECCCCEECCCCE
Confidence 3444444444444
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=106.03 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=16.5
Q ss_pred eecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 469 AKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 469 v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
++||++|+||++++|.++ ++||++|+||+|++|
T Consensus 190 ~~IGd~v~IGaga~Il~g-v~IG~~a~IGagsvV 222 (267)
T 1ssq_A 190 PKVREGVMIGAGAKILGN-IEVGKYAKIGANSVV 222 (267)
T ss_dssp CEECTTCEECTTCEEESS-CEECTTCEECTTCEE
T ss_pred eEECCCeEEcCCCEEeCC-cEECCCCEECCCCEE
Confidence 334444444444444444 445666666666655
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.9e-09 Score=97.03 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=44.5
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHH
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQ 157 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~ 157 (523)
|.+|||||| +|+||+. ||+|++++|+|||+|+++.+.+. +|+||+++ .+.+.
T Consensus 1 m~aiILAgG--~s~Rmg~-----~K~ll~~~G~pli~~~~~~l~~~----~vvvv~~~-~~~~~ 52 (208)
T 3ngw_A 1 MKVAVLVGG--VGRRIGM-----EKTEVMLCGKKLIEWVLEKYSPF----QTVFVCRD-EKQAE 52 (208)
T ss_dssp CEEEEECCC--CCTTTTS-----CGGGCEETTEEHHHHHHHHHTTS----EEEEECSS-HHHHH
T ss_pred CEEEEECCC--chhhCCC-----CCcccEECCeeHHHHHHHHhcCC----CEEEEECC-HHHHH
Confidence 579999999 9999974 99999999999999999999863 88988875 33443
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-09 Score=104.39 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=16.6
Q ss_pred ecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 470 KMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 470 ~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
+||++|+||++++|.++ ++||++|+||+|++|
T Consensus 211 ~IGd~v~IGaga~Ilgg-v~IG~~a~IGagsvV 242 (289)
T 1t3d_A 211 KIREGVMIGAGAKILGN-IEVGRGAKIGAGSVV 242 (289)
T ss_dssp EECTTCEECTTCEEESS-CEECTTCEECTTCEE
T ss_pred EECCCeEECCCCEEecC-cEECCCCEECCCCEE
Confidence 33444444444444444 455666666666666
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.5e-10 Score=107.06 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=33.5
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
.+.++||++|+||.+++|.+| +.||++|+||++++|..
T Consensus 109 ~g~v~IG~~v~IG~~a~I~~g-v~IG~~~iIgagsvV~~ 146 (212)
T 3eev_A 109 SGDTIIGHDVWIGTEAMIMPG-VKIGHGAIIASRSVVTK 146 (212)
T ss_dssp CCCEEECSSCEECTTCEECTT-CEECTTCEECTTCEECS
T ss_pred CCCeEECCCCEECCCCEEcCC-CEECCCCEECCCCEEcc
Confidence 357899999999999999999 67799999999999943
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.4e-09 Score=105.17 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=25.7
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecC
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNP 485 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~ 485 (523)
+++||++|.||++|+|.+ .++||+++.||++++|..
T Consensus 251 ~~~IGd~V~IGaga~Il~----------gv~IGd~a~IGagsvV~~ 286 (310)
T 3f1x_A 251 HPILEDDVIVYSNATILG----------RVTIGKGATVGGNIWVTE 286 (310)
T ss_dssp SCEECTTCEECTTCEEES----------SCEECTTCEECSSCEECS
T ss_pred CCEECCCcEEcCCCEECC----------CcEECCCCEECCCCEECC
Confidence 457888888888888865 367777777777765543
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.97 E-value=9e-10 Score=104.50 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=33.8
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
.+.++||++++||.+++|.+| +.||++|+||++++|..
T Consensus 116 ~g~v~Igd~v~IG~~a~I~~g-v~IG~~~~IgagsvV~~ 153 (219)
T 4e8l_A 116 KGDIEIGNDVWIGRDVTIMPG-VKIGDGAIIAAEAVVTK 153 (219)
T ss_dssp CCCEEECSSCEECTTCEECTT-CEECTTCEECTTCEECS
T ss_pred cCCcEECCCeEECCCCEEcCC-CEECCCCEECCCCEEcc
Confidence 357899999999999999999 67799999999999943
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=102.62 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=42.7
Q ss_pred CCCEECCCcEECCCCEECCC--CEEee-eEECCCCEECCCC------------EE-eceEECCCCEECCCcEEcCCCCCC
Q psy17795 399 PTAIVGPNVSIDDGAVIGPG--VRIKE-SIILQGASIGNHS------------LV-LNSIVGRNSKVGNWSRVEGTPCDP 462 (523)
Q Consensus 399 ~~~~I~~~~~Ig~~~~I~~~--~~I~~-s~Ig~~~~Ig~~~------------~I-~~~iIg~~~~Ig~~~~i~~~~~~~ 462 (523)
.++.||++++|+++|+|.++ ++|++ +.||++|.|...+ .+ ..++||++|.||.+|+|.+
T Consensus 73 ~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~----- 147 (199)
T 3ftt_A 73 WNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLP----- 147 (199)
T ss_dssp TTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECT-----
T ss_pred CCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECC-----
Confidence 33444444444444444222 34432 4455666664332 33 3678888888888888865
Q ss_pred CCCCCceecCCCCeecCCCee
Q psy17795 463 NPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 463 ~~~~~~v~I~~~~~ig~~~~i 483 (523)
.++||++++||++++|
T Consensus 148 -----gv~IG~~~vIgagsvV 163 (199)
T 3ftt_A 148 -----GVTIGEGSVIGAGSVV 163 (199)
T ss_dssp -----TCEECTTCEECTTCEE
T ss_pred -----CCEECCCCEECCCCEE
Confidence 3677777777666544
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=6.6e-09 Score=101.15 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=45.4
Q ss_pred CceEecCcEECCCCEECC--CCEECCCcEECCCCEECCCCEEee---------eEECCCCEECCCCEEe-ceEECCCCEE
Q psy17795 382 QCKTIGDVYIHSSASVHP--TAIVGPNVSIDDGAVIGPGVRIKE---------SIILQGASIGNHSLVL-NSIVGRNSKV 449 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~---------s~Ig~~~~Ig~~~~I~-~~iIg~~~~I 449 (523)
+..|++++.||++++|++ +++|+++++||++|.|+++++|+. ++||++|.||.+++|. +++||++|.|
T Consensus 137 g~~I~p~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~a~I 216 (267)
T 1ssq_A 137 DVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKI 216 (267)
T ss_dssp SCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEE
T ss_pred ceEeCCCCEECCCEEECCCCceEECCeeEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCCCEE
Confidence 556777777777777774 566777777777777777777654 2455555555555443 4445555555
Q ss_pred CCCcEEc
Q psy17795 450 GNWSRVE 456 (523)
Q Consensus 450 g~~~~i~ 456 (523)
|++++|.
T Consensus 217 GagsvV~ 223 (267)
T 1ssq_A 217 GANSVVL 223 (267)
T ss_dssp CTTCEEC
T ss_pred CCCCEEc
Confidence 5544443
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=99.79 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=10.8
Q ss_pred ceEECCCCEECCCcEEcC
Q psy17795 440 NSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~ 457 (523)
.++||++|.||.+|+|.+
T Consensus 132 ~v~IG~~v~IG~~~~I~~ 149 (188)
T 3srt_A 132 PVKIGDNVWIGGGVIITP 149 (188)
T ss_dssp CEEECSSCEECTTCEECT
T ss_pred CcEECCCcEEcCCCEECC
Confidence 456666666666666643
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.7e-09 Score=105.17 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=62.6
Q ss_pred CceEecCcEECCCCEE--CCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEeceEECCCCEECCCcEEcCC
Q psy17795 382 QCKTIGDVYIHSSASV--HPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I--~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~ 458 (523)
+..|++++.|+++++| +.+++||+++.||++|.|+++++|++ +.+++++.++.++. .+++||++|.||++|+|.+
T Consensus 163 gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~-~~~~IGd~v~IGaga~Ilg- 240 (313)
T 3q1x_A 163 SIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTK-RHPTVGDYVTIGTGAKVLG- 240 (313)
T ss_dssp CCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSS-CSCEECSSCEECTTCEEES-
T ss_pred CeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCc-cCCEECCCCEECCCCEECC-
Confidence 4566666666666666 44456666666666666666665543 44444444444331 2569999999999999976
Q ss_pred CCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 459 PCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 459 ~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
.++||++++||++++|..+
T Consensus 241 ---------gv~IG~~a~IGagsvV~~d 259 (313)
T 3q1x_A 241 ---------NIIVGSHVRIGANCWIDRD 259 (313)
T ss_dssp ---------SCEECSSEEECTTCEECSC
T ss_pred ---------CcEECCCCEECCCCEECCC
Confidence 4788888888888877665
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-08 Score=100.73 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=45.7
Q ss_pred CceEecCcEECCCCEECC--CCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC
Q psy17795 382 QCKTIGDVYIHSSASVHP--TAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP 459 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~ 459 (523)
+..|++++.||++++|++ +++|+++++||++|.|+.+++|+.+ +...+ ..+++||++|.||++|+|.+
T Consensus 157 g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvtLg~~----~~~~~----~~~~~IGd~v~IGaga~Ilg-- 226 (289)
T 1t3d_A 157 QVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGT----GKSGG----DRHPKIREGVMIGAGAKILG-- 226 (289)
T ss_dssp SCEECTTCEECSSCEECSCTTCEECTTCEECSSCEECTTCEEECC----SSSCS----SCSCEECTTCEECTTCEEES--
T ss_pred ceEEcCCCEEcCCEEECCCCceEECCCcEECCCCEEcCCcEECCC----ccccC----CCCeEECCCeEECCCCEEec--
Confidence 456666677777777763 4555556666666666666555431 00000 11356666666666666654
Q ss_pred CCCCCCCCceecCCCCeecCCCee
Q psy17795 460 CDPNPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 460 ~~~~~~~~~v~I~~~~~ig~~~~i 483 (523)
.++||+++.||++++|
T Consensus 227 --------gv~IG~~a~IGagsvV 242 (289)
T 1t3d_A 227 --------NIEVGRGAKIGAGSVV 242 (289)
T ss_dssp --------SCEECTTCEECTTCEE
T ss_pred --------CcEECCCCEECCCCEE
Confidence 2455555555555533
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.8e-09 Score=98.32 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=54.5
Q ss_pred ecCcEECCCCEECCCCEECC--CcEECCCCEECCCCEEeee-EECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCC
Q psy17795 386 IGDVYIHSSASVHPTAIVGP--NVSIDDGAVIGPGVRIKES-IILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCD 461 (523)
Q Consensus 386 ~~~~~i~~~~~I~~~~~I~~--~~~Ig~~~~I~~~~~I~~s-~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~ 461 (523)
+.++.||++++|++++.|.. .++||++|.|+++|.|... ...+......+..+. .++||++|.||.+|+|.+
T Consensus 73 g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~---- 148 (203)
T 1krr_A 73 GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINP---- 148 (203)
T ss_dssp STTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECT----
T ss_pred CCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeC----
Confidence 44556666666666655532 3667777777777766432 112223233334343 688999999999999875
Q ss_pred CCCCCCceecCCCCeecCCCee
Q psy17795 462 PNPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 462 ~~~~~~~v~I~~~~~ig~~~~i 483 (523)
.++||++++||++++|
T Consensus 149 ------gv~IG~~~vIgagsvV 164 (203)
T 1krr_A 149 ------GVTIGDNSVIGAGSIV 164 (203)
T ss_dssp ------TCEECTTCEECTTCEE
T ss_pred ------CeEECCCCEECCCCEE
Confidence 3677777777777644
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-09 Score=108.08 Aligned_cols=90 Identities=17% Similarity=0.270 Sum_probs=54.8
Q ss_pred CceEecCcEECCCCEECCC-CEECCCcE-ECCCCEECCCCEEe-eeEECCCCEECCCCEEe----c-----eEECCCCEE
Q psy17795 382 QCKTIGDVYIHSSASVHPT-AIVGPNVS-IDDGAVIGPGVRIK-ESIILQGASIGNHSLVL----N-----SIVGRNSKV 449 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~-~~I~~~~~-Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~----~-----~iIg~~~~I 449 (523)
++.|.+++.|++++.|+++ +.|+.++. ||+ |.|+. .|+ +++||++|.|+++++|. + ++||++|.|
T Consensus 223 ~a~I~~~a~IG~gv~Ig~g~a~Ig~nv~vIG~-~~I~~--~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~I 299 (387)
T 2rij_A 223 SSKVRMGASLAAGTTIMPGASYVNFNAGTTGA-CMVEG--RISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLL 299 (387)
T ss_dssp GGGBBTTCBCCTTCEECSSSCEECTTCEESSC-CEECS--EECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEE
T ss_pred CCEECCCeEEcCCCEEeCCeeEECCCcEEECC-EEEee--EECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEE
Confidence 4445555555555555554 55555555 555 55542 443 36777777777777643 2 678888888
Q ss_pred CCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 450 GNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 450 g~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
|.+|. .+ ++||++|.||++++|..+
T Consensus 300 GagAv-~G-----------V~IGdgavIGAGsVVt~d 324 (387)
T 2rij_A 300 GANSV-TG-----------IPLGDNCIVDAGIAVLEG 324 (387)
T ss_dssp CTTCE-EC-----------SCBCTTCEECTTCEECTT
T ss_pred CCCCc-CC-----------cEECCCCEECCCCEECCC
Confidence 88777 33 566777666655544444
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=106.66 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=64.4
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCC
Q psy17795 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~ 458 (523)
++.|+++|+| +++.| .+++||++|.|+++|.|.+|+||++|.||++|+|.+++||++|.||++++|.+.
T Consensus 324 ~~~ig~~~~I-~~~~i-~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~i~~~~~i~~~ 392 (420)
T 3brk_X 324 SSVVSGDCII-SGAAL-NRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGED 392 (420)
T ss_dssp SCEECSSCEE-ESCEE-ESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEESSC
T ss_pred CCEECCCCEE-cCCEE-eCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECCCCEECCCCEEeCC
Confidence 7888888888 78888 579999999999999999999999999999999999999999999999999864
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=93.94 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=29.8
Q ss_pred eEecCcEECCCCEECCCCEEC--CCcEECCCCEECCCCEEe
Q psy17795 384 KTIGDVYIHSSASVHPTAIVG--PNVSIDDGAVIGPGVRIK 422 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~ 422 (523)
.++.++.||+++.|.+++.|. .+++||++|.|+++|.|.
T Consensus 70 ~~g~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~ 110 (185)
T 2p2o_A 70 DYGYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIY 110 (185)
T ss_dssp SCSTTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEE
T ss_pred EecCCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEE
Confidence 455677788888888777774 678888888888888884
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-09 Score=103.05 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=33.1
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
.+.++||++|+||.+++|.+| +.||++|+|+++++|..
T Consensus 111 ~~~v~Ig~~v~IG~~a~I~~g-v~Ig~~~~Igags~V~~ 148 (209)
T 1mr7_A 111 KGDTIIGNDVWIGKDVVIMPG-VKIGDGAIVAANSVVVK 148 (209)
T ss_dssp CCCEEECSSCEECTTCEECTT-CEECTTCEECTTCEECS
T ss_pred cCCcEECCCCEEcCCCEEcCC-CEECCCCEEcCCCEEcC
Confidence 346889999999999999999 67799999999999944
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.76 E-value=4.9e-08 Score=89.93 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=27.8
Q ss_pred EecCcEECCCCEECCCCEEC--CCcEECCCCEECCCCEEe
Q psy17795 385 TIGDVYIHSSASVHPTAIVG--PNVSIDDGAVIGPGVRIK 422 (523)
Q Consensus 385 i~~~~~i~~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~ 422 (523)
++.++.||+++.|.+++.|. .+++||++|.|+++|.|.
T Consensus 69 ~g~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~ 108 (182)
T 1ocx_A 69 YGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIY 108 (182)
T ss_dssp SSTTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEE
T ss_pred eCCCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEE
Confidence 45667777777777777773 567888888888888874
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-08 Score=94.70 Aligned_cols=37 Identities=11% Similarity=0.226 Sum_probs=33.0
Q ss_pred CceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 467 AFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 467 ~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
+.++||++|+||.+++|.+| +.||++|+||++++|..
T Consensus 109 ~~v~IG~~v~IG~~a~I~~g-v~Ig~~~~IgagsvV~~ 145 (212)
T 1xat_A 109 GDTLIGHEVWIGTEAMFMPG-VRVGHGAIIGSRALVTG 145 (212)
T ss_dssp CCEEECTTCEECTTCEECTT-CEECTTCEECTTCEECS
T ss_pred CCeEECCCCEECCCCEEeCC-CEECCCCEECCCCEEcc
Confidence 46899999999999999999 67799999999999944
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-08 Score=94.59 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=15.4
Q ss_pred CCCCEECCCcEE-eCeEEcCCcEeCCCCCCc
Q psy17795 491 GDGVTVPGELIV-LNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 491 G~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~ 520 (523)
|.+|.|.++++| .+++|++++.|++++|+.
T Consensus 128 G~~a~I~~gv~IG~~~~IgagsvV~~dv~~~ 158 (219)
T 4e8l_A 128 GRDVTIMPGVKIGDGAIIAAEAVVTKNVAPY 158 (219)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECSCBCTT
T ss_pred CCCCEEcCCCEECCCCEECCCCEEcccCCCC
Confidence 444444444444 445566666666666543
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.8e-08 Score=93.00 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=18.6
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCC
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNG 481 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~ 481 (523)
+++||++|.||.+|.|.+ +++||+++.||+++
T Consensus 111 ~v~IG~~v~IG~~a~I~~----------gv~IG~~~iIgags 142 (212)
T 3eev_A 111 DTIIGHDVWIGTEAMIMP----------GVKIGHGAIIASRS 142 (212)
T ss_dssp CEEECSSCEECTTCEECT----------TCEECTTCEECTTC
T ss_pred CeEECCCCEECCCCEEcC----------CCEECCCCEECCCC
Confidence 466666666666666654 24555555555544
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.8e-08 Score=92.66 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=19.7
Q ss_pred EeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCcc
Q psy17795 489 ILGDGVTVPGELIV-LNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 489 iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~~ 521 (523)
.||.+|.|.++++| .+++|++++.|.+++|+..
T Consensus 121 ~IG~~a~I~~gv~Ig~~~~Igags~V~~~v~~~~ 154 (209)
T 1mr7_A 121 WIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYM 154 (209)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred EEcCCCEEcCCCEECCCCEEcCCCEEcCCCCCCe
Confidence 33444444444444 4667777777888887544
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-06 Score=81.85 Aligned_cols=49 Identities=10% Similarity=-0.031 Sum_probs=29.0
Q ss_pred CCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCcc
Q psy17795 472 DNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 472 ~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~~ 521 (523)
++++.+...++|.++ +.||.+|.|.++++| .+++|+++++|++++|+..
T Consensus 102 ~~~~~~~~~v~IG~~-v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~vp~~~ 151 (212)
T 1xat_A 102 VNGYQPAGDTLIGHE-VWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYA 151 (212)
T ss_dssp CCCCCCCCCEEECTT-CEECTTCEECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred ccCceecCCeEECCC-CEECCCCEEeCCCEECCCCEECCCCEEcccCCCCc
Confidence 333333333444444 455666666666666 5677778888888877544
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-05 Score=82.40 Aligned_cols=194 Identities=12% Similarity=0.141 Sum_probs=114.8
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC-CcchHHHHHHHHhcC-----CCccEEEEEccCChHHHHHHHHhhhhc
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA-GLPMIQHHIEACVQV-----PNLKEIIILGYYPSADLQKFVLDMVQE 166 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~-g~pli~~~l~~~~~~-----~g~~~i~vv~~~~~~~i~~~l~~~~~~ 166 (523)
++-+|+|||| .||||+- ..||.++|+. |+++++..++++... ..+.-+++......+..+++|++. ..
T Consensus 127 kvavvlLaGG--lGTRLG~---~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~-~~ 200 (528)
T 3r3i_A 127 KLVVVKLNGG--LGTSMGC---KGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKY-NH 200 (528)
T ss_dssp TEEEEEECCC--BCTTTTC---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGG-TT
T ss_pred ceEEEEeCCC--CccccCC---CCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhc-Cc
Confidence 4567888888 9999987 8899999997 899999999988753 123334444455778999999884 44
Q ss_pred cCeeEEEEeccc-cc--chhhhhc--------cccccccc-CCCchhHHH-------Hhhc-ccCCcceEEEEc-----c
Q psy17795 167 YKINIRYLQEFW-DI--IHQQICI--------SLYWTWYR-NTRSTYGIY-------RNSL-HWVQEAVYFTLE-----I 221 (523)
Q Consensus 167 ~~~~i~~~~~~~-~~--g~~~~~~--------~~~~~~~~-g~~ta~al~-------~~~i-~~~~d~~~Lvl~-----i 221 (523)
++.++.+..|.. |. -+...+. .....|+. | .++-.. .+.+ ...-++ +.+.+ .
T Consensus 201 fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~G--hGdiy~aL~~sGlLd~l~~~Giey-i~v~nvDNlga 277 (528)
T 3r3i_A 201 CRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPG--HGDIYASFYNSGLLDTFIGEGKEY-IFVSNIDNLGA 277 (528)
T ss_dssp SSCCEEEEECCCBCCEETTTCCCC-------------CBCCB--TTTHHHHHHHHSHHHHHHHTTCCE-EEEEETTBTTC
T ss_pred cCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCC--ChHHHHHHHHCChHHHHHhcCCEE-EEEEccCCccc
Confidence 677787776632 10 0001111 11235675 4 443222 2222 233456 55555 2
Q ss_pred chHH-HHHHHHhc----CCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC--------cccceeeeeEEEe
Q psy17795 222 RSDV-VILMHSLY----SMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST--------FVSTLVNCGVYLF 288 (523)
Q Consensus 222 ~~D~-l~~~h~~~----~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~--------~~~~l~~~Giyif 288 (523)
..|. ++.++... + +++.+-+.+-...+ ..-|.+...+..-+|+++.|-|.+ ....+.|+...+|
T Consensus 278 ~vDp~~Lg~~~~~~~~~~--~d~~~kVv~Kt~~d-ek~Gvl~~~dGk~~vvEyseip~e~~~~~~g~~~f~~~Ntnnlw~ 354 (528)
T 3r3i_A 278 TVDLYILNHLMNPPNGKR--CEFVMEVTNKTRAD-VKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWI 354 (528)
T ss_dssp CCCHHHHHHHSSCSSSCC--CSEEEEECCCCTTC-CSSCEEECSSSSCEEECTTSSCGGGTTTSSCSSSCCCCEEEEEEE
T ss_pred ccCHHHHHHHHhcccccC--CcEEEEEeEccccC-CcccEEEEECCeEEEEEecCCChhHhhccCCcccCCeEEEEEEEE
Confidence 2466 77777765 5 77666554322111 345666542111346666665532 1334579999999
Q ss_pred eHHHHHHHHH
Q psy17795 289 SLDIFQNIAA 298 (523)
Q Consensus 289 ~~~il~~l~~ 298 (523)
+-+.++.+.+
T Consensus 355 ~L~~L~~v~~ 364 (528)
T 3r3i_A 355 SLAAVKRLQE 364 (528)
T ss_dssp EHHHHHHHHH
T ss_pred EHHHHHHHHH
Confidence 9888776654
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.02 Score=59.60 Aligned_cols=191 Identities=13% Similarity=0.076 Sum_probs=111.4
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCccccee-CCcchHHHHHHHHhcC---CCcc-EEEEEccC-ChHHHHHHHHhhhhc
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPV-AGLPMIQHHIEACVQV---PNLK-EIIILGYY-PSADLQKFVLDMVQE 166 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i-~g~pli~~~l~~~~~~---~g~~-~i~vv~~~-~~~~i~~~l~~~~~~ 166 (523)
++-+|.|||| .||||+- .-||.++|+ .|+++++..++++... .+.. ..+|.+.+ ..++.+++|++. ..
T Consensus 76 kvavvlLaGG--lGTRLG~---~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~-~~ 149 (484)
T 3gue_A 76 QAVVLKLNGG--LGTGMGL---NGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKY-PT 149 (484)
T ss_dssp TEEEEEEECC--CCGGGTC---SSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGC-HH
T ss_pred hcEEEEEcCC--cccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhC-cc
Confidence 4557888888 9999987 789999999 6889999998887643 1222 34555555 778999999874 33
Q ss_pred cCe---eEEEEecc-cc-cc-hhhh----hccccccccc-CCCchhHHH-------Hhhc-ccCCcceEEEEc-----cc
Q psy17795 167 YKI---NIRYLQEF-WD-II-HQQI----CISLYWTWYR-NTRSTYGIY-------RNSL-HWVQEAVYFTLE-----IR 222 (523)
Q Consensus 167 ~~~---~i~~~~~~-~~-~g-~~~~----~~~~~~~~~~-g~~ta~al~-------~~~i-~~~~d~~~Lvl~-----i~ 222 (523)
+++ ++.+..|. .| .. +... .......|+. | .++-.. .+.+ ...-++ +.+.+ -.
T Consensus 150 Fgl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~G--hGdiy~aL~~sGiLd~l~~~Giey-i~v~~vDNL~a~ 226 (484)
T 3gue_A 150 LYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPG--HGDVYTVLYSSGKLDYLLGKGYRY-MFISNGDNLGAT 226 (484)
T ss_dssp HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCC--GGGHHHHHHHHSHHHHHHHTTCCE-EEEEETTCTTCC
T ss_pred cCCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCC--chHHHHHHHhCCcHHHHHHcCCEE-EEEEcCCCcccc
Confidence 443 34444442 11 00 0000 0111235775 4 444322 2222 233456 56655 23
Q ss_pred hHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEc---------CCCC--cEEEEeecCCCc--------ccceee
Q psy17795 223 SDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRK---------QQTS--EISHYVEKPSTF--------VSTLVN 282 (523)
Q Consensus 223 ~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d---------~~~~--~V~~~~ekp~~~--------~~~l~~ 282 (523)
.|. ++.++.+.+ +++.+-+.+-...+ ..-|.+... .+ | +|+++.|-|.+. ...+-+
T Consensus 227 ~Dp~~lG~~~~~~--~d~~~kvv~Kt~~d-ekgG~l~~~~~~~~~~~~~d-G~~~vvEyseip~e~~~~f~~~~g~~~FN 302 (484)
T 3gue_A 227 LDVRLLDYMHEKQ--LGFLMEVCRRTESD-KKGGHLAYKDVIDETTGQTR-RRFVLRESAQCPKEDEDSFQNIAKHCFFN 302 (484)
T ss_dssp CCHHHHHHHHHTT--CSEEEEEEECCTTC-CSSEEEEEEC--------CC-CEEEEEEGGGSCGGGHHHHTCTTTSCEEE
T ss_pred cCHHHHHHHHhcC--CCEEEEEEECCCCC-CceeEEEEEccccccccCCC-CCEEEEEeccCCHHHHhhhcCCCCceEeE
Confidence 565 888888888 88777776543222 345655432 12 4 355665555321 122448
Q ss_pred eeEEEeeHHHHHHH
Q psy17795 283 CGVYLFSLDIFQNI 296 (523)
Q Consensus 283 ~Giyif~~~il~~l 296 (523)
++..+++-..++.+
T Consensus 303 tnNi~~~l~~l~~~ 316 (484)
T 3gue_A 303 TNNIWINLMELKKM 316 (484)
T ss_dssp EEEEEEEHHHHHHH
T ss_pred eeeEEEEHHHHHHH
Confidence 88888887766433
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.019 Score=61.46 Aligned_cols=192 Identities=10% Similarity=0.020 Sum_probs=109.0
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC---CcchHHHHHHHHhcCCCcc-EEEEEccC-ChHHHHHHHHhhhhcc
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA---GLPMIQHHIEACVQVPNLK-EIIILGYY-PSADLQKFVLDMVQEY 167 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~---g~pli~~~l~~~~~~~g~~-~i~vv~~~-~~~~i~~~l~~~~~~~ 167 (523)
++-+|+|||| .||||+- ..||.++|++ |++++++.++++.+..|.. ..+|.+.+ ..+...++|.+++- -
T Consensus 114 kvavvllaGG--lGTRLG~---~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fgl-~ 187 (630)
T 3ogz_A 114 KTVFVLVAGG--LGERLGY---SSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQL-E 187 (630)
T ss_dssp GEEEEEECCC--EEGGGTE---EEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTTC-C
T ss_pred hceEEEecCC--cccccCC---CCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhCC-C
Confidence 3557888888 9999987 8899999997 9999999999988643433 24555544 77899999987311 1
Q ss_pred CeeEEEEecc-ccc-chh--hhhc--cccccccc-CCCchhHHH--H--h------------------hc----ccCCcc
Q psy17795 168 KINIRYLQEF-WDI-IHQ--QICI--SLYWTWYR-NTRSTYGIY--R--N------------------SL----HWVQEA 214 (523)
Q Consensus 168 ~~~i~~~~~~-~~~-g~~--~~~~--~~~~~~~~-g~~ta~al~--~--~------------------~i----~~~~d~ 214 (523)
..+|.+..|. .|. .+. .... ....-|+. | .++-.. . . .+ ...-++
T Consensus 188 ~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~G--hGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Giey 265 (630)
T 3ogz_A 188 VPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHG--HGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYES 265 (630)
T ss_dssp CTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCC--TTHHHHHHHHCBC--------------CCBHHHHHHHTTCCE
T ss_pred cccEEEEEcCCEEEEecCCCceeecCCCcccCCCCC--CHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEE
Confidence 1245555442 111 000 0000 01224665 3 333222 1 1 11 122455
Q ss_pred eEEEEc---c---chHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE--cCCCCcE-----EEEeecC-------
Q psy17795 215 VYFTLE---I---RSDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR--KQQTSEI-----SHYVEKP------- 273 (523)
Q Consensus 215 ~~Lvl~---i---~~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~--d~~~~~V-----~~~~ekp------- 273 (523)
+.+.+ . ..|. ++-++.+.+ +++.+-+.+.. ....-|.+.. ..+ |+. +++.|-|
T Consensus 266 -i~v~~vDN~L~~~~DP~~lG~~~~~~--~d~~~kvv~r~--p~E~vG~l~~~~~~d-Gk~~~v~vVEYsei~~~~~~~~ 339 (630)
T 3ogz_A 266 -IVFIQDTNAGATITIPISLALSAEHS--LDMNFTCIPRV--PKEPIGLLCRTKKNS-GDPWLVANVEYNVFAEVSRALN 339 (630)
T ss_dssp -EEEECTTBTTHHHHHHHHHHHHHHTT--CSEEEEEECCC--SSCSSCEEEEEESST-TSCCEEEEECHHHHHHHHHHC-
T ss_pred -EEEEccCCccccccCHHHhHHHHhcC--CCEEEEEEECC--CCcceeeEEEEecCC-CceeeeeEEEeccCCHhHhhcc
Confidence 55555 2 2455 888888888 88776665532 2234565543 223 554 3322211
Q ss_pred --C--------CcccceeeeeEEEeeHH-HHHHHHH
Q psy17795 274 --S--------TFVSTLVNCGVYLFSLD-IFQNIAA 298 (523)
Q Consensus 274 --~--------~~~~~l~~~Giyif~~~-il~~l~~ 298 (523)
. .......|+...+|+-+ +.+.+.+
T Consensus 340 ~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~ 375 (630)
T 3ogz_A 340 KDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRE 375 (630)
T ss_dssp -----------CCCSSCEEEEEEEEEHHHHHHHHHH
T ss_pred CCCccccccccccccccccceeeeEEHHHHHHHHHh
Confidence 0 02233568999999987 5556654
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=89.08 E-value=0.2 Score=46.19 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=40.4
Q ss_pred eeEEEEe--cCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEE-EEEccCC
Q psy17795 94 WTTNDTT--PGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEI-IILGYYP 152 (523)
Q Consensus 94 m~~iila--~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i-~vv~~~~ 152 (523)
|.+||++ +. ..|||.+ .+.+......++|||+|+++.+.+. +++.+ ++++++.
T Consensus 4 ~~~vip~k~g~--~KtRL~~---~l~~~~~~~l~~~ll~~vl~~l~~~-~~~~v~vvv~~~~ 59 (211)
T 2i5e_A 4 MRAVIPYKKAG--AKSRLSP---VLSLQEREEFVELMLNQVISSLKGA-GIEQVDILSPSVY 59 (211)
T ss_dssp CEEEEECCCTT--TTGGGTT---TSCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEESSCT
T ss_pred eEEEEEeCCCC--CccccCc---cCCHHHHHHHHHHHHHHHHHHHHHc-CCceEEEEEcCcH
Confidence 6688888 55 6778765 4444444466799999999999986 78999 8888764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 523 | ||||
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 1e-16 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 3e-14 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 5e-14 | |
| d1914a1 | 78 | d.49.1.1 (A:4004-4081) Signal recognition particle | 9e-14 | |
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 4e-12 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 6e-12 | |
| d1fxja1 | 78 | b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha | 6e-11 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 3e-09 | |
| d2jf2a1 | 262 | b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra | 2e-08 | |
| d2jf2a1 | 262 | b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra | 0.001 | |
| d1j2za_ | 259 | b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer | 6e-08 | |
| d1j2za_ | 259 | b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer | 2e-04 | |
| d2oi6a2 | 248 | c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate | 5e-07 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 5e-07 | |
| d2f9ca1 | 320 | b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm | 2e-06 | |
| d2f9ca1 | 320 | b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm | 2e-04 | |
| d2f9ca1 | 320 | b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm | 0.002 | |
| d2dpwa1 | 231 | c.68.1.19 (A:1-231) Uncharacterized protein TTHA01 | 1e-05 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 1e-05 | |
| d1qrea_ | 210 | b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M | 4e-04 | |
| d1vpaa_ | 221 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 6e-04 | |
| d1w77a1 | 226 | c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl- | 7e-04 | |
| d1vgwa_ | 226 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 9e-04 | |
| d1i52a_ | 225 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 0.002 | |
| d1v3wa_ | 173 | b.81.1.5 (A:) Ferripyochelin binding protein {Arch | 0.002 | |
| d1qwja_ | 228 | c.68.1.13 (A:) CMP acylneuraminate synthetase {Mou | 0.004 |
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 78.3 bits (193), Expect = 1e-16
Identities = 39/224 (17%), Positives = 73/224 (32%), Gaps = 35/224 (15%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR P +L K L PV PMI + + + ++EI+I+ + +L
Sbjct: 11 SGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPQDTPRFQQLLGDG 69
Query: 165 QEYKINIRYLQEFWD-------IIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYF 217
+ ++++Y + +I + + YG H E +
Sbjct: 70 SNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYG------HDFHELLGS 123
Query: 218 TLEIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFV 277
+ ++ +V A + YG +V Q + EKP
Sbjct: 124 ASQRQTG--------------ASVFAYHVLDPER--YG-VVEFDQGGKAISLEEKPLEPK 166
Query: 278 STLVNCGVYLFSLDIFQNIAAVFQSKQDEF----YNGNYMVNGK 317
S G+Y + + + S + E N Y+ G+
Sbjct: 167 SNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQ 210
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 70.9 bits (174), Expect = 3e-14
Identities = 38/231 (16%), Positives = 72/231 (31%), Gaps = 49/231 (21%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR P++ K L P+ PMI + + + ++EI+I+ + +L
Sbjct: 11 SGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA-GIREILIITTPEDKGYFQRLLGDG 69
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLE-IRS 223
E+ I + Y ++ S G+ +A +
Sbjct: 70 SEFGIQLEYAEQ---------------------PSPDGL--------AQAFIIGETFLNG 100
Query: 224 DVVILMHS--LYSMAILVTVMATEATRQQSVY-----------YGCIVRKQQTSEISHYV 270
+ L+ ++ + A R + +G + IS
Sbjct: 101 EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAIS-LE 159
Query: 271 EKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFY----NGNYMVNGK 317
EKP S G+Y + + + V S++ E N Y+ G
Sbjct: 160 EKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGN 210
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 70.3 bits (172), Expect = 5e-14
Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 27/214 (12%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR P++ K L P+ PMI + + + +++I+I+ L + +L
Sbjct: 13 SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLA-GIRDILIISTPRDLPLYRDLLGDG 71
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLH-----WVQEAVYFTL 219
++ + Y + R + + ++ + V F
Sbjct: 72 SQFGVRFSYRVQ---------------EEPRGIADAFIVGKDFIGDSKVALVLGDNVFYG 116
Query: 220 EIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVST 279
S+++ SL A + + +G + + IS EKPS S
Sbjct: 117 HRFSEILRRAASLEDGA---VIFGYYVRDPRP--FGVVEFDSEGRVIS-IEEKPSRPKSN 170
Query: 280 LVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYM 313
V G+Y + + + + S + E +
Sbjct: 171 YVVPGLYFYDNQVVEIARRIEPSDRGELEITSVN 204
|
| >d1914a1 d.49.1.1 (A:4004-4081) Signal recognition particle 9KDa protein, SRP9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 78 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Signal recognition particle alu RNA binding heterodimer, SRP9/14 superfamily: Signal recognition particle alu RNA binding heterodimer, SRP9/14 family: Signal recognition particle alu RNA binding heterodimer, SRP9/14 domain: Signal recognition particle 9KDa protein, SRP9 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.4 bits (157), Expect = 9e-14
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 17 DNARYSMKYDHKNGYLKLKMTDDNVCLIYKTEMSQDLKKID 57
R +KY H +G L +K+TDD VCL+Y+T+ +QD+KKI+
Sbjct: 20 MKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIE 60
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 65.0 bits (157), Expect = 4e-12
Identities = 30/272 (11%), Positives = 72/272 (26%), Gaps = 14/272 (5%)
Query: 105 KGTRFRPLSLDSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDM 163
GTR PL+ KP P+ +I + C+ K ++ + ++ +
Sbjct: 21 AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY 80
Query: 164 VQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRS 223
Q ++ + Y ++ + +
Sbjct: 81 ASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYR 140
Query: 224 DVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNC 283
+ +A ++ +++ + I + EKP +
Sbjct: 141 MDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKV 200
Query: 284 GVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNG-------KDTDFNHIQLEKEIIMPLAG 336
+ LD + + G Y+++ +D E+I
Sbjct: 201 DTTILGLDDKR-----AKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATS 255
Query: 337 SG-KAYVYQTSKWWSQLKSAGSAIYANRHYLQ 367
G + Y +W + + + AN +
Sbjct: 256 LGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 287
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 63.6 bits (153), Expect = 6e-12
Identities = 32/262 (12%), Positives = 77/262 (29%), Gaps = 24/262 (9%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR ++ PKP+ + G P++ H ++ +K+ II Y ++++ +
Sbjct: 12 LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH-GIKDFIICCGYKGYVIKEYFANYF 70
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRSD 224
++ E +H + T S+ R
Sbjct: 71 LHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYG 130
Query: 225 VVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCG 284
+ + + +AT + G + ++ ++N G
Sbjct: 131 DGVADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQAGQVRSFQEKPKGDGAMINGG 190
Query: 285 VYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQ 344
++ + + I + E+E +M LA G+ ++
Sbjct: 191 FFVLNPSVIDLIDNDATT-----------------------WEQEPLMTLAQQGELMAFE 227
Query: 345 TSKWWSQLKSAGSAIYANRHYL 366
+W + + +Y +
Sbjct: 228 HPGFWQPMDTLRDKVYLEGLWE 249
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 56.4 bits (136), Expect = 6e-11
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
G + + I+ NV++ IG G IK S+I I +++V ++ +
Sbjct: 13 GTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAA 72
Query: 447 SKVGN 451
+G
Sbjct: 73 CTIGP 77
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 55.4 bits (132), Expect = 3e-09
Identities = 20/106 (18%), Positives = 35/106 (33%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR RPL+ ++PK L V P+I++ IE + III+GY V
Sbjct: 13 LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKYGV 72
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHW 210
+ + + ++ + +
Sbjct: 73 RLVFNDKYADYNNFYSLYLVKEELANSYVIDADNYLFKNMFRNDLT 118
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Score = 53.3 bits (127), Expect = 2e-08
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
I SA VHPTAIV SI A IGP I+ IG +++ + +V ++K+
Sbjct: 2 IDKSAFVHPTAIVEEGASIGANAHIGPFC-----IVGPHVEIGEGTVLKSHVVVNGHTKI 56
Query: 450 GNWSRVEGTPCDPNPNKAFAKMDNP 474
G + + N+ P
Sbjct: 57 GRDNEIYQFASIGEVNQDLKYAGEP 81
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Score = 38.7 bits (89), Expect = 0.001
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESII 426
I ++A + P IVGP+V I +G V+ V +
Sbjct: 17 GASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTK 55
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Score = 51.6 bits (122), Expect = 6e-08
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
I +A + P A + V I + VIG GV++ E G + N+ + +
Sbjct: 3 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDE-----GVKLHNNVTLQGHTFVGKNTEI 57
Query: 451 NWSRVEGTPCDPNPNK 466
V GT K
Sbjct: 58 FPFAVLGTQPQDLKYK 73
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 10/69 (14%), Positives = 24/69 (34%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
I+ + ++G V +D+G + V ++ + + VL +
Sbjct: 12 KAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLK 71
Query: 448 KVGNWSRVE 456
G +S +
Sbjct: 72 YKGEYSELI 80
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 48.9 bits (115), Expect = 5e-07
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KGTR D PK L +AG M+QH I+A ++ ++ G+ + +
Sbjct: 12 KGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHG-----GDLLKQAL 63
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYF 217
++ +N E H + ++ + YG + +
Sbjct: 64 KDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRD 116
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 48.9 bits (115), Expect = 5e-07
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KGTR + D PK L VAG+ M++H + + E + A+L + VL
Sbjct: 11 KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQP--EKTVTVVGHKAELVEEVLAGQ 65
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWY 194
E+ L ++ + +
Sbjct: 66 TEFVTQSEQLGTGHAVMMTEPILEGLSGHT 95
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Score = 47.1 bits (111), Expect = 2e-06
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 387 GDVYIHS-SASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLN-SIVG 444
GD +I+ +A + N I + VRI +++ + A I + + + + +
Sbjct: 55 GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQ 114
Query: 445 RNSKVGNW 452
+S
Sbjct: 115 SSSVREEC 122
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Score = 41.4 bits (96), Expect = 2e-04
Identities = 13/71 (18%), Positives = 27/71 (38%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
+ + + A + ++ + IG V I + I GA I ++ + +S V
Sbjct: 63 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREEC 122
Query: 448 KVGNWSRVEGT 458
+ +RV
Sbjct: 123 AIYGDARVLNQ 133
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Score = 38.3 bits (88), Expect = 0.002
Identities = 13/74 (17%), Positives = 25/74 (33%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
I +A + + NV I D I + I +I + S+ + +
Sbjct: 68 AGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGD 127
Query: 447 SKVGNWSRVEGTPC 460
++V N S +
Sbjct: 128 ARVLNQSEILAIQG 141
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Score = 44.1 bits (103), Expect = 1e-05
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
K + K L P G PM++ +EA + + + L +
Sbjct: 12 KEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAAG----LSPVYVGENPGLVPAPALTL 66
Query: 165 QEYKINIRYLQEFWDIIHQQICI 187
+ + L++ + + ++ +
Sbjct: 67 PDRGGLLENLEQALEHVEGRVLV 89
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 44.2 bits (103), Expect = 1e-05
Identities = 32/259 (12%), Positives = 72/259 (27%), Gaps = 21/259 (8%)
Query: 105 KGTRFRPLSLDS-PKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLD 162
+G R PLS + PKP P+ +++ +E + + + +
Sbjct: 12 RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTL------------LAVR 59
Query: 163 MVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIR 222
QE + + G R + V R
Sbjct: 60 RDQEAVARPYADGIRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYR 119
Query: 223 SDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVN 282
+ ++ + ++ + + Y R+ +VEKPS +
Sbjct: 120 EALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI 179
Query: 283 CGVYLFSLDIFQNIAAVFQSKQDEFYNGNY-----MVNGKDTDFNHIQLEKEII--MPLA 335
Y+++ +F A ++ ++ G + + L K I +
Sbjct: 180 RKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVME 239
Query: 336 GSGKAYVYQTSKWWSQLKS 354
+ + V W + +
Sbjct: 240 KAERVRVVLGRFPWDDVGN 258
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Score = 39.6 bits (91), Expect = 4e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGV 419
I +A + P A V V+I ++ P
Sbjct: 25 IDPTAYIDPQASVIGEVTIGANVMVSPMA 53
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 8/83 (9%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KG R + PK + G + ++ + ++ + ++I+ ++ + +
Sbjct: 13 KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHE 69
Query: 165 QEYKINIRYLQEFWDIIHQQICI 187
+ I + +
Sbjct: 70 KVLGIVEGGDTRSQSVRSALEFL 92
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 38.9 bits (89), Expect = 7e-04
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
+G R + PK P+ G P+ + ++P +KEI+++ D+ + + +
Sbjct: 14 QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESI 70
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWY 194
+E D ++ + +
Sbjct: 71 DVDLRFAIPGKERQDSVYSGLQEIDVNSEL 100
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Score = 38.5 bits (88), Expect = 9e-04
Identities = 12/128 (9%), Positives = 29/128 (22%), Gaps = 5/128 (3%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
G RF D PK + +++H + + + +++ K
Sbjct: 13 IGVRFG---ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTAFP 69
Query: 165 QEYKINIRYLQEFWDII--HQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIR 222
Q + ++ + N +
Sbjct: 70 QVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNA 129
Query: 223 SDVVILMH 230
++ IL
Sbjct: 130 AEGGILAV 137
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Score = 37.7 bits (86), Expect = 0.002
Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
G R + + PK + +++H + A + P +K ++I + + L
Sbjct: 13 FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANH 69
Query: 165 QEYKINIRYLQEFWDIIHQQICIS 188
+ + + ++
Sbjct: 70 PQITVVDGGDERADSVLAGLKAAG 93
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 36.9 bits (84), Expect = 0.002
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGV 419
IH SA V A+V +V +++ + P
Sbjct: 11 PRIHPSAFVDENAVVIGDVVLEEKTSVWPSA 41
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.6 bits (83), Expect = 0.004
Identities = 10/118 (8%), Positives = 31/118 (26%)
Query: 118 KPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQEF 177
K + +AG+P+I + A + + + + + + + +
Sbjct: 20 KNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSS 79
Query: 178 WDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRSDVVILMHSLYSM 235
+ ++ + +Q+ E D V + +
Sbjct: 80 TSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQF 137
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 523 | |||
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 99.97 | |
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 99.97 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.94 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.93 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.93 | |
| d1914a1 | 78 | Signal recognition particle 9KDa protein, SRP9 {Mo | 99.91 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.89 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.86 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.65 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.63 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.63 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.61 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.56 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.56 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.5 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.5 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 99.49 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 99.47 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.47 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.46 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.43 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.42 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.42 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.38 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.35 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.34 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 99.32 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.3 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 99.29 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 99.27 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.25 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.23 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.19 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 99.18 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.18 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.14 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 99.12 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 99.09 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.09 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.08 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 99.02 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.98 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.96 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 98.92 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.91 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 98.81 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 98.72 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.67 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 98.65 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.6 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 98.58 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.57 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 98.46 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.43 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.34 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 97.44 |
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.6e-37 Score=306.52 Aligned_cols=228 Identities=18% Similarity=0.198 Sum_probs=199.8
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEcc-CChHHHHHHHHhhhhccCeeE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY-YPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i 171 (523)
++|||||||| +||||+|+|..+||||+||+|+|||+|+|+.|..+ |+++|+|++. ++.+.+++++++. +++++++
T Consensus 1 k~KavILAgG--~GtRl~plT~~~pKpllpi~gkPiI~~~l~~l~~~-Gi~ei~ii~~~~~~~~i~~~~~~~-~~~g~~I 76 (292)
T d1fxoa_ 1 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPQDTPRFQQLLGDG-SNWGLDL 76 (292)
T ss_dssp CEEEEEECCC--CCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTS-GGGTCEE
T ss_pred CcEEEEECCC--CCCcCChhhcCCCcccCEECCEehHHHHHHHHHHC-CCCEEEEEeCcCCHHHHHHHhccc-cccCeEE
Confidence 3689999999 99999999999999999999999999999999996 9999987766 4778899988873 6789999
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~ 243 (523)
.|+.|++++| ||+|++ .+++.+ ++. ||+++ ++ .|+ ++++|.+.+ +.+++++
T Consensus 77 ~y~~q~~~~G-----------------ta~ai~~a~~~i~~-~~~-~lil~dD~~~~~dl~~ll~~h~~~~--~~~~i~~ 135 (292)
T d1fxoa_ 77 QYAVQPSPDG-----------------LAQAFLIGESFIGN-DLS-ALVLGDNLYYGHDFHELLGSASQRQ--TGASVFA 135 (292)
T ss_dssp EEEECSSCCC-----------------GGGHHHHTHHHHTT-SEE-EEEETTEEEECTTHHHHHHHHHTCC--SSEEEEE
T ss_pred EEccCCCCCc-----------------HHHHHHhhhhhcCC-Cce-EEEEccccccCcCHHHHHHHHHhCC--CCcEEEE
Confidence 9999999999 999999 778873 344 77777 43 466 999999988 8889999
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccc
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNH 323 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 323 (523)
.+++ +|++||++..|++ +++..|.|||+.+.++++.+|+|+|++++++.+..+.++.++|+++
T Consensus 136 ~~V~--~p~~yGV~~~d~~-~ki~~~~EKP~~p~Snla~~G~Y~f~~~~~~~~~~l~~s~rgE~ei-------------- 198 (292)
T d1fxoa_ 136 YHVL--DPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEI-------------- 198 (292)
T ss_dssp EECS--CGGGSEEEEECTT-SCEEEEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCH--------------
T ss_pred EECC--CHHHCeEEEEcCC-CCEeEEEECCCCCCCCcEEEEEEEEChHHHHHHHhCCCCCCCchhh--------------
Confidence 9984 5789999999987 9999999999999999999999999999999998887777777766
Q ss_pred ccchhhhhhhhhcCCcEEEEEcc--hhHhhhccchhhhhccHHHH
Q psy17795 324 IQLEKEIIMPLAGSGKAYVYQTS--KWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 324 ~~~~~dil~~li~~g~v~~~~~~--g~w~dIgt~~dyl~an~~~l 366 (523)
+|+++.+++++++.++.+. .+|+|+||+++|++|++.+.
T Consensus 199 ----tD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~ 239 (292)
T d1fxoa_ 199 ----TDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 239 (292)
T ss_dssp ----HHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 7999999999987776653 36999999999999998654
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-37 Score=305.95 Aligned_cols=226 Identities=18% Similarity=0.192 Sum_probs=196.2
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCeeEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~ 172 (523)
|+||||||| +||||+|+|..+||||+||+|+|||+|+|+.|..+ |+++|+|++++ ..+.+++++++ +++|++++.
T Consensus 2 MkaiIlagG--~GtRl~p~t~~~pK~llpi~~kp~i~~~l~~l~~~-gi~~i~iv~~~~~~~~~~~~~~~-g~~~gi~I~ 77 (291)
T d1mc3a_ 2 MKGIILAGG--SGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA-GIREILIITTPEDKGYFQRLLGD-GSEFGIQLE 77 (291)
T ss_dssp CEEEEECCC--CCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEE
T ss_pred ccEEEECCc--CccccchhhcCCCccccEECCEehHHHHHHHHHHc-CCCEEEEEeCcccHHHHHHHhCc-hHhhCcEEE
Confidence 789999999 99999999999999999999999999999999996 99999999988 45567777776 467899999
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cch--HH--HHHHHHhcCCcceEEEEEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRS--DV--VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~--D~--l~~~h~~~~~~~~~tv~~~ 244 (523)
|+.|++++| ||+|+. .+++++ ++. +||++ ++. |+ ++++|.+.. ..+|+++.
T Consensus 78 y~~Q~~plG-----------------ta~Ai~~a~~fi~~-~~~-~lvlgddi~~~~~~~~~l~~~~~~~--~~atI~~~ 136 (291)
T d1mc3a_ 78 YAEQPSPDG-----------------LAQAFIIGETFLNG-EPS-CLVLGDNIFFGQGFSPKLRHVAART--EGATVFGY 136 (291)
T ss_dssp EEECSSCCC-----------------STHHHHHTHHHHTT-SCE-EEEETTEEEECSSCHHHHHHHTTCC--SSEEEEEE
T ss_pred EEECCCCCc-----------------hHHHHHHHHHHhCC-CCe-EEEECCCcccCcCHHHHHHHHHhCc--CCcEEEEE
Confidence 999999999 999999 788873 233 67777 443 33 788888877 78899999
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccc
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 324 (523)
+++ +|++||++..|++ |+|.+|.|||+.+.++++++|+|+|++++++.+.+..++.++|+++
T Consensus 137 ~V~--dP~~yGVve~d~~-g~i~~i~EKP~~p~Sn~a~~GiY~f~~~v~~~~~~lk~s~rgE~EI--------------- 198 (291)
T d1mc3a_ 137 QVM--DPERFGVVEFDDN-FRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEI--------------- 198 (291)
T ss_dssp ECS--CCSSSBBCEEETT-EEEEECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCH---------------
T ss_pred ECC--CcccCCCceeccC-cceeEEEECCCCCCCCeEEEEEEEeChHHHHHHhcCCCCCCCceee---------------
Confidence 984 6889999999987 9999999999999999999999999999999998877777788776
Q ss_pred cchhhhhhhhhcCCcEEEEEc-ch-hHhhhccchhhhhccHHH
Q psy17795 325 QLEKEIIMPLAGSGKAYVYQT-SK-WWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 325 ~~~~dil~~li~~g~v~~~~~-~g-~w~dIgt~~dyl~an~~~ 365 (523)
+|+++.+++.+.+..+.. .+ +|.|+||++++++|+...
T Consensus 199 ---tdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 199 ---TSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp ---HHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred ---hHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 799999998888665544 34 699999999999999865
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.97 E-value=1.8e-31 Score=265.07 Aligned_cols=228 Identities=14% Similarity=0.154 Sum_probs=189.0
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCC-hHHHHHHHHhhhhccCeeE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYP-SADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i 171 (523)
.|+||||||| +||||+|+|..+||||+||+|+|||+|+|+++... |+++++||+++. .+.+++++.+. +++++++
T Consensus 3 ~MkavIlagG--~GtRl~p~t~~~PK~ll~i~~kpii~~~l~~l~~~-g~~~i~Iv~~~~~~~~~~~~~~~~-~~~~~~i 78 (295)
T d1lvwa_ 3 HMKGIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLA-GIRDILIISTPRDLPLYRDLLGDG-SQFGVRF 78 (295)
T ss_dssp SCEEEEECCC--CCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTS-GGGTSEE
T ss_pred CcEEEEECCC--CcccCCcccCCCCcccCeECCEEHHHHHHHHHHHC-CCCeEEEEeCcccHHHHHHHhccc-hhcCCEE
Confidence 5899999999 99999999999999999999999999999999996 999999999884 56667777663 5678899
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~ 243 (523)
.++.|++++| ||+|++ ++++.+ ++. +++++ ++ .++ +...|.... ..+++++
T Consensus 79 ~~v~e~~~~g-----------------ta~Al~~a~~~l~~-~~~-~li~~~d~~~~~~~~~~~~~~~~~~--~~~ti~~ 137 (295)
T d1lvwa_ 79 SYRVQEEPRG-----------------IADAFIVGKDFIGD-SKV-ALVLGDNVFYGHRFSEILRRAASLE--DGAVIFG 137 (295)
T ss_dssp EEEECSSCCC-----------------GGGHHHHTHHHHTT-SCE-EEEETTCCEECTTHHHHHHHHHTCC--SSEEEEE
T ss_pred EEEECCCCCC-----------------HHHHHHHHHHHcCC-CCE-EEEeCCcceechhHHHHHHHHHhCC--CCeEEEE
Confidence 9999988888 999999 777763 233 66666 33 344 777888877 7889988
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccc
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNH 323 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 323 (523)
.++. .|..||++..+.+ ++|.+|.|||..+.++++++|+|+|++++|..+.+......+|+++
T Consensus 138 ~~~~--~~~~yG~i~~~~~-~~v~~~~EKp~~~~s~~~~~Giy~~n~~if~~~~~~~~~~~~e~~~-------------- 200 (295)
T d1lvwa_ 138 YYVR--DPRPFGVVEFDSE-GRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEI-------------- 200 (295)
T ss_dssp EECS--CCTTSEEEEECTT-SBEEEEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCH--------------
T ss_pred EEcC--CCccccEEEECCC-CcEEEEeecccCcccceeecceEEECHHHHHHHHhcCCCcCCCeec--------------
Confidence 8874 5678999999876 8999999999988899999999999999998887755444455543
Q ss_pred ccchhhhhhhhhcCCc--EEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 324 IQLEKEIIMPLAGSGK--AYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 324 ~~~~~dil~~li~~g~--v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
+++++.++..+. ++.+....+|.|+|++++|..++..+.
T Consensus 201 ----~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i~ 241 (295)
T d1lvwa_ 201 ----TSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp ----HHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred ----cchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHHH
Confidence 688888887775 556666789999999999999987653
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.97 E-value=6.5e-31 Score=261.94 Aligned_cols=239 Identities=18% Similarity=0.254 Sum_probs=181.7
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh------
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ------ 165 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~------ 165 (523)
.+.||||||| +||||+|+|..+||||+||+|+ |||+|+|++|.++ |+++|+|+++++.+++.+|+.+...
T Consensus 11 ~~~AIILAaG--~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~ 87 (307)
T d1yp2a2 11 SVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGY 87 (307)
T ss_dssp HEEEEEC--------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHT-TCCEEEEEESCCCHHHHHHHHHHCC------
T ss_pred ceEEEEECCC--CcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHc-CCCEEEEEeccccccchhhhhcccccccccc
Confidence 3669999999 9999999999999999999885 9999999999996 9999999999998999999976311
Q ss_pred -ccCeeEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc----cchHH--HHHHHHhcCC
Q psy17795 166 -EYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE----IRSDV--VILMHSLYSM 235 (523)
Q Consensus 166 -~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~----i~~D~--l~~~h~~~~~ 235 (523)
..+....+..+..+. +..|..| ++++++ ++++. ...++ |++++ +..|+ +++.|+..+
T Consensus 88 ~~~~~~~~~~~~~~~~---------~~~~~~g--~~~ai~~~~~~i~~~~~~~-~iv~~~D~~~~~d~~~~~~~~~~~~- 154 (307)
T d1yp2a2 88 KNEGFVEVLAAQQSPE---------NPDWFQG--TADAVRQYLWLFEEHTVLE-YLILAGDHLYRMDYEKFIQAHRETD- 154 (307)
T ss_dssp --CCEEEEEESCSSTT---------SCCCCCS--HHHHHHHTHHHHTTSCCSE-EEEECSCEECCCCHHHHHHHHHHTT-
T ss_pred cccccceeeceeeecc---------ccccccc--hhHHHHHhHHhhhccccce-EEEecCcceeccchhhhhhhhhhcc-
Confidence 112233333332222 2466777 999998 66776 33466 89988 23455 889999888
Q ss_pred cceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC---------------------cccceeeeeEEEeeHHHHH
Q psy17795 236 AILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST---------------------FVSTLVNCGVYLFSLDIFQ 294 (523)
Q Consensus 236 ~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~---------------------~~~~l~~~Giyif~~~il~ 294 (523)
+.+++++..++.+++..||++.+|++ ++|.+|.|||.. ....+.++|+|+|++++|.
T Consensus 155 -~~~~~~~~~~~~~~~~~~gvv~~d~~-~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~ 232 (307)
T d1yp2a2 155 -ADITVAALPMDEKRATAFGLMKIDEE-GRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVML 232 (307)
T ss_dssp -CSEEEEEEEECHHHHTTSEEEEECTT-SBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHH
T ss_pred -ccceEEEEecccccccccceEEECCC-CcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHH
Confidence 88888887776556678999999987 999999999852 1346889999999999987
Q ss_pred HHHHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHHHHhh
Q psy17795 295 NIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRHYLQL 368 (523)
Q Consensus 295 ~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~~l~~ 368 (523)
.+.+... .+..++..|+++.+++++. +.++.++|+|.|+||+++|++|+..++..
T Consensus 233 ~~~~~~~-------------------~~~~~~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~ 288 (307)
T d1yp2a2 233 NLLRDKF-------------------PGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 288 (307)
T ss_dssp HHHHTTC-------------------TTCCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCS
T ss_pred HHhhhcc-------------------ccccchHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcC
Confidence 6644211 1223456799999888874 99999999999999999999999988754
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=3.9e-27 Score=227.48 Aligned_cols=223 Identities=17% Similarity=0.271 Sum_probs=159.2
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhc-----
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQE----- 166 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~----- 166 (523)
|.+|||||||| +||||+|+|...||||+||+|+|||+|+|+.|.++ |+++|+|+++|..+++++|+.+....
T Consensus 1 ~~~kAiILAAG--~GtRl~~lT~~~PK~Ll~i~gkplI~~~i~~l~~~-gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~ 77 (259)
T d1tzfa_ 1 MASKAVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH-GIKDFIICCGYKGYVIKEYFANYFLHMSDVT 77 (259)
T ss_dssp CCCEEEEEECS--CC--------CCCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTHHHHHHHHHTHHHHHSCEE
T ss_pred CCceEEEECCC--ccccCChhhCCCCccceEECCEEHHHHHHHHHHHc-CCCeeeeccchhHHHHHHHHhcchhcccccc
Confidence 56789999999 99999999999999999999999999999999996 99999999999999999999763110
Q ss_pred ---------------cCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cchHH--
Q psy17795 167 ---------------YKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRSDV-- 225 (523)
Q Consensus 167 ---------------~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~D~-- 225 (523)
....+.++.+....+ +++++. .+.+.. +++ |++++ .++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~-~~~-~~~~~~d~~~~~~~ 138 (259)
T d1tzfa_ 78 FHMAENRMEVHHKRVEPWNVTLVDTGDSSM-----------------TGGRLKRVAEYVKD-DEA-FLFTYGDGVADLDI 138 (259)
T ss_dssp EEGGGTEEEETTCCCCCCEEEEEECCSSCC-----------------HHHHHHHTGGGTTT-SSC-EEEEETTEEECCCH
T ss_pred chhccccchhhhccccccceeEEecccccc-----------------ccchhhhhhhhccC-CCc-eEEeccccccccch
Confidence 011233444444444 677777 454442 355 77766 44333
Q ss_pred --HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhccc
Q psy17795 226 --VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSK 303 (523)
Q Consensus 226 --l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~ 303 (523)
++++|.... ...+..... .+++++.+.... .++..+.+.+. ..+.+.++|+|++++++++.+.+
T Consensus 139 ~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~--~~i~~~~~~~~-~~~~~~~~G~y~~~~~~~~~i~~----- 204 (259)
T d1tzfa_ 139 KATIDFHKAHG--KKATLTATF----PPGRFGALDIQA--GQVRSFQEKPK-GDGAMINGGFFVLNPSVIDLIDN----- 204 (259)
T ss_dssp HHHHHHHHHHC--CSEEEEEEC----CCCCSEEEEEET--TEEEEEEESCS-CCSCCEECCCEEECGGGGGGCCS-----
T ss_pred hhhhhhhcccc--cceeecccc----ccccCCceeccc--ceEEeeeeccc-cceeeecceeccccchhhhhccc-----
Confidence 667777766 665655543 235677665553 56776666553 45778999999999988765432
Q ss_pred ccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhh
Q psy17795 304 QDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQL 368 (523)
Q Consensus 304 ~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~ 368 (523)
...+++.++++.|++.++++++..++||.|+||++||..++..+...
T Consensus 205 ------------------~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~~~~ 251 (259)
T d1tzfa_ 205 ------------------DATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKG 251 (259)
T ss_dssp ------------------TTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTT
T ss_pred ------------------CcCccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHHHcC
Confidence 12234578999999999999999999999999999999988887753
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.93 E-value=1.6e-26 Score=219.62 Aligned_cols=222 Identities=15% Similarity=0.146 Sum_probs=159.3
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|+|+||||||| .||||+|+|...||||+||+|+|||+|+++.|.++ |+++|+|+++|..++++.+.. .+++++
T Consensus 2 m~mkaiIlaaG--~GtRl~p~t~~~pK~ll~i~gkpli~~~i~~l~~~-g~~~i~iv~g~~~e~i~~~~~----~~~i~i 74 (229)
T d1jyka_ 2 IRVKAIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK-GINDIIIIVGYLKEQFDYLKE----KYGVRL 74 (229)
T ss_dssp CCCEEEEEECS--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCCEEEEECTTGGGGTHHHH----HHCCEE
T ss_pred CceeEEEECCC--CcccCCccccCCCcceeEECCEEHHHHHHHHHHHh-CCcccccccccchhhhhhhhh----hccccc
Confidence 88999999999 99999999999999999999999999999999987 999999999998888854433 367788
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cchHHHHHHHHhcCCcceEEEEEEeeC
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRSDVVILMHSLYSMAILVTVMATEAT 247 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~D~l~~~h~~~~~~~~~tv~~~~~~ 247 (523)
.+..+.+++| |+++++ +++++ ++ |++++ ++.+-.+. +.- ....+++..+.
T Consensus 75 ~~~~~~~~~G-----------------t~~sl~~a~~~l~---~~-~ii~~dd~~~~~~~~---~~~--~~~~~~~~~~~ 128 (229)
T d1jyka_ 75 VFNDKYADYN-----------------NFYSLYLVKEELA---NS-YVIDADNYLFKNMFR---NDL--TRSTYFSVYRE 128 (229)
T ss_dssp EECTTTTTSC-----------------THHHHHTTGGGCT---TE-EEEETTEEESSCCCC---SCC--CSEEEEECEES
T ss_pred cccccccccc-----------------cccccccchhhhc---cc-ccccccccccccchh---hhh--hccccceeeee
Confidence 7777777788 999999 66665 44 66655 22111111 111 11233333332
Q ss_pred CCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccch
Q psy17795 248 RQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLE 327 (523)
Q Consensus 248 ~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 327 (523)
++..++.+..+++ ++|..+.++|. ..+..+|+|+|++...+.+.........+. .....+.
T Consensus 129 --~~~~~~~~~~~~~-~~i~~~~~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 189 (229)
T d1jyka_ 129 --DCTNEWFLVYGDD-YKVQDIIVDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSG-------------EFVDLYW 189 (229)
T ss_dssp --SCSSCCEEEECTT-CBEEEEECCCS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTT-------------CCTTCCT
T ss_pred --eccccceeEEccC-CceeeEEEecc---cceEEEEEEEEcHHHHHHHHHHHHHhhccc-------------ccchhHH
Confidence 3467888888877 99999998864 467788999999877665544322210000 0001122
Q ss_pred hhhhhhhhcCCcEEEEEcch-hHhhhccchhhhhccHHH
Q psy17795 328 KEIIMPLAGSGKAYVYQTSK-WWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 328 ~dil~~li~~g~v~~~~~~g-~w~dIgt~~dyl~an~~~ 365 (523)
.+++..+.++..++++...+ .|.+++|++||..+++.+
T Consensus 190 ~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 190 DNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp THHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 46677777777788887766 599999999998887654
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=1.1e-25 Score=219.86 Aligned_cols=237 Identities=16% Similarity=0.180 Sum_probs=152.9
Q ss_pred cceeEEEEecCCCCCCcCCCC-CCCCCccccee-CCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPL-SLDSPKPLFPV-AGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~l-T~~~pK~ll~i-~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~ 169 (523)
|+..||||||| .||||+|| |..+||||+|| +++|||+|+++++....+.+++++++++..+.+.++...
T Consensus 1 MKi~aVILAGG--~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~~~------- 71 (268)
T d2cu2a2 1 MKTYALVMAGG--RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYAD------- 71 (268)
T ss_dssp CCEEEEEECCC--CCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCS-------
T ss_pred CCceEEEecCC--CcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhhcc-------
Confidence 45559999999 99999999 56789999997 579999999999987657888999998877666544322
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc----cchHH-----HHHHHHhcCCcc
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE----IRSDV-----VILMHSLYSMAI 237 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~----i~~D~-----l~~~h~~~~~~~ 237 (523)
.+.++.++++.| |++++. ...+. ..++. ++|++ +..|+ +.+.+...+.+.
T Consensus 72 ~~~ii~E~~~~~-----------------t~~a~~~~~~~~~~~~~~~-vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~ 133 (268)
T d2cu2a2 72 GIRLLLEPLGRD-----------------TAGAVLLGVAEALKEGAER-LLVLPADHYVGDDEAYREALATMLEAAEEGF 133 (268)
T ss_dssp SSEEEEESSCCH-----------------HHHHHHHHHHHHHHHTCSE-EEEEESSCEESCHHHHHHHHHHHHHHCCTTC
T ss_pred ccceeeeeecCC-----------------cccchhhHHHHHhccCCce-eEEEecchhhcccHHHHHHHHHHHHHHhcCC
Confidence 244566777777 888887 33332 33566 88988 22343 222222222125
Q ss_pred eEEEEEEeeCCCCCcceeEEEEcCCCC---cEEEEeecCCCc-------ccceeeeeEEEeeHHHH-HHHHHhhcccccc
Q psy17795 238 LVTVMATEATRQQSVYYGCIVRKQQTS---EISHYVEKPSTF-------VSTLVNCGVYLFSLDIF-QNIAAVFQSKQDE 306 (523)
Q Consensus 238 ~~tv~~~~~~~~~~~~~g~v~~d~~~~---~V~~~~ekp~~~-------~~~l~~~Giyif~~~il-~~l~~~~~~~~~e 306 (523)
.+++...+. ..+..||++..+++.+ +|.+|.|||+.. ..+++|+|+|+|++++| +.+++..+.....
T Consensus 134 ~~~~~~~~~--~~~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~~~~~~~~~N~Giy~f~~~~l~~~~~~~~p~i~~~ 211 (268)
T d2cu2a2 134 VVALGLRPT--RPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEA 211 (268)
T ss_dssp EEEEEECCS--SCCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHH
T ss_pred eEeeecccc--ccccccceEEeccccccchhhheeecccchhhhhhhhccCcccchhhhhcchHHHHHHHHhhhHHHHHH
Confidence 556555543 4568999998875422 799999999732 24789999999999866 3333332211000
Q ss_pred cccccccc---cCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhc
Q psy17795 307 FYNGNYMV---NGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 307 ~~~~~~~~---~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
+.. .... ..-|..-+..+|...+ |.+..++.+++++++|.|+|+++++++.
T Consensus 212 ~~~-~~~~~~~~~~f~~l~~iSiDyav---lEk~~~v~~v~~d~~W~DvGtw~s~~~~ 265 (268)
T d2cu2a2 212 LER-LLAGASLEEVYAGLPKISIDYGV---MEKAERVRVVLGRFPWDDVGNWRALERV 265 (268)
T ss_dssp HHH-HHTTCCHHHHHHTSCCCCHHHHT---GGGCSSEEEEEECSCEECCCSTTHHHHH
T ss_pred HHH-HHhcchHHHHHhhCccccchhhh---hcccCCceEEecCCCcCCCcCHHHHHHH
Confidence 000 0000 0001111223343333 2345569999999999999999998764
|
| >d1914a1 d.49.1.1 (A:4004-4081) Signal recognition particle 9KDa protein, SRP9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Signal recognition particle alu RNA binding heterodimer, SRP9/14 superfamily: Signal recognition particle alu RNA binding heterodimer, SRP9/14 family: Signal recognition particle alu RNA binding heterodimer, SRP9/14 domain: Signal recognition particle 9KDa protein, SRP9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=7.2e-26 Score=170.64 Aligned_cols=62 Identities=32% Similarity=0.578 Sum_probs=58.4
Q ss_pred cccccceeeecc-----CCCccEEEEEEEecCCeEEEEEecCceEEEEEcccchhhhhHHHhhhccc
Q psy17795 3 YDHKNGYLKLKM-----TDDNARYSMKYDHKNGYLKLKMTDDNVCLIYKTEMSQDLKKIDNAKKHVE 64 (523)
Q Consensus 3 ~~~~~~~~~~~~-----~p~~~r~~~k~~~~~~~~~~k~t~~~~~~~~~~~~~~~~~~~e~~~~~~~ 64 (523)
|+.|+.|.++++ ||+||||||||||++|+|+||||||.+||||||++++|+||||+||..|+
T Consensus 1 f~sWeEF~~aa~~Ly~~~P~ktRyv~Kyrh~~g~l~LKvTDd~~clkykT~~~~dlkkiEkln~~lm 67 (78)
T d1914a1 1 FQTWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEKFHSQLM 67 (78)
T ss_dssp CCSHHHHHHHHHHHHHHCTTTCEEEEEEETTTTEEEEEEECSSSEEEEEECBGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEEEEcCCCeEEEEEecCceEEEEecchHHHHHHHHHHHHHHH
Confidence 789999999865 69999999999999999999999999999999999999999999998755
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.89 E-value=1.9e-22 Score=192.88 Aligned_cols=221 Identities=17% Similarity=0.241 Sum_probs=162.8
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYL 174 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 174 (523)
-||||||| +||||+| .+||||++|+|+|||+|+++.|.+. |+++++||+++..+.+..+... .+.+.
T Consensus 3 ~AIIlAaG--~GtRl~~---~~PK~L~~i~Gkpli~~~l~~l~~~-~~~~iivv~~~~~~~~~~~~~~-------~~~~~ 69 (250)
T d1g97a2 3 FAIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKAELVEEVLAG-------QTEFV 69 (250)
T ss_dssp EEEEECCC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHGGG-CCSEEEEEECTTHHHHHHHTTT-------TSEEE
T ss_pred EEEEECCC--CCCCCCC---CCCceeeEECCeeHHHHHHHHHHHc-CCCeEEEecccccchhhhhccc-------ccccc
Confidence 38999999 9999999 7899999999999999999999996 9999999999988777666544 13344
Q ss_pred ecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cch--HH--HHHHHHhcCCcceEEEEEEe
Q psy17795 175 QEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IRS--DV--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~~--D~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
.+..+.| +++++. ...+....++.+++++ ++. ++ ++++|.... ..+++...+
T Consensus 70 ~~~~~~g-----------------~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~ 130 (250)
T d1g97a2 70 TQSEQLG-----------------TGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHK--NVATILTAE 130 (250)
T ss_dssp ECSSCCC-----------------HHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTT--CSEEEEEEE
T ss_pred ccccccc-----------------cchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhc--cccccccce
Confidence 4555666 777777 4555422233155554 222 23 788888887 888888777
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCC----cccceeeeeEEEeeHHHHHHH-HHhhccc-ccccccccccccCCCC
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPST----FVSTLVNCGVYLFSLDIFQNI-AAVFQSK-QDEFYNGNYMVNGKDT 319 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~----~~~~l~~~Giyif~~~il~~l-~~~~~~~-~~e~~~~~~~~~~~~~ 319 (523)
.. .+..+|.+..+.. +.+..+.+++.. ...++.++|+|+|+...+... ....... .+++
T Consensus 131 ~~--~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~------------ 195 (250)
T d1g97a2 131 TD--NPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEY------------ 195 (250)
T ss_dssp CS--CCTTSCEEEECTT-CCEEEEECGGGCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSC------------
T ss_pred ec--ccCCCceEEEeec-eEEEEeeccccccccccccceeeeeeeecchHHHHHHHHHhccCcchhhH------------
Confidence 64 4568888888776 889999888753 346789999999998765443 3221111 2222
Q ss_pred CcccccchhhhhhhhhcCC-cEEEEEcchhHhh--hccchhhhhccHHHHhh
Q psy17795 320 DFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQ--LKSAGSAIYANRHYLQL 368 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~d--Igt~~dyl~an~~~l~~ 368 (523)
+.+++++.++++| +|.++..+++|.+ ++|++|+-.|...+.++
T Consensus 196 ------~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~ 241 (250)
T d1g97a2 196 ------YITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRR 241 (250)
T ss_dssp ------CGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred ------HHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHH
Confidence 3378889888887 4999999999977 66999998887776654
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.7e-21 Score=182.72 Aligned_cols=222 Identities=18% Similarity=0.186 Sum_probs=154.4
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~ 172 (523)
.|++|||||| +||||+| .+||||+||+|+|||+|+|+.|... ++++|+|++++..+.+.+++.+ ....
T Consensus 2 ~MkvIILAAG--~GtRm~~---~~PKpli~i~gkpiie~~i~~l~~~-~~~~iiiv~~~~~~~~~~~~~~------~~~~ 69 (248)
T d2oi6a2 2 AMSVVILAAG--KGTRMYS---DLPKVLHTLAGKAMVQHVIDAANEL-GAAHVHLVYGHGGDLLKQALKD------DNLN 69 (248)
T ss_dssp CEEEEEECCS--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHH-TCSCEEEEESSCHHHHHHHCCC------TTEE
T ss_pred CceEEEECCC--CCCCCCC---CCCeeeEEECChhHHHHHHHHHHHc-CCcEEEeccCcccceeeeeccc------cccc
Confidence 4899999999 9999999 7899999999999999999999996 9999999999988777766543 2244
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cchHH--HHHHHHhcCCcceEEEEEEe
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IRSDV--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~~D~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
+..+..+.| +++++. .+++.. +.+ +++.. ...+. +...+.... ....+++..+
T Consensus 70 ~~~~~~~~g-----------------~~~~~~~~~~~i~~-~~~-~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 129 (248)
T d2oi6a2 70 WVLQAEQLG-----------------TGHAMQQAAPFFAD-DED-ILMLYGDVPLISVETLQRLRDAKP-QGGIGLLTVK 129 (248)
T ss_dssp EEECSSCCC-----------------HHHHHHHHGGGSCT-TSE-EEEEETTCTTCCHHHHHHHHHHCC-TTSEEEEEEE
T ss_pred ccccccCcc-----------------cHHHHHhhhhhhcc-ccc-eeeecCccccccchhHHHHHHHhh-ccccceeEEE
Confidence 556666677 899998 666653 233 44544 22222 333333222 1444555554
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecC----CCcccceeeeeEEEeeHHHH-HHHHHhhccc-ccccccccccccCCCC
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKP----STFVSTLVNCGVYLFSLDIF-QNIAAVFQSK-QDEFYNGNYMVNGKDT 319 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp----~~~~~~l~~~Giyif~~~il-~~l~~~~~~~-~~e~~~~~~~~~~~~~ 319 (523)
. .++..++.+..+. +....+.+++ ......+..+|.|.|+.+.+ +.+....... ..|||+
T Consensus 130 ~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~l---------- 195 (248)
T d2oi6a2 130 L--DDPTGYGRITREN--GKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYI---------- 195 (248)
T ss_dssp C--SCCTTSCEEEEET--TEEEEEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCT----------
T ss_pred e--cCCcccccccccc--CccceeeeccCCChhhhhhhhhhhhhhccchHHHHHHHHHhhccccchhhhh----------
Confidence 4 3567788777664 5555555432 23355678999999998765 4443332222 345554
Q ss_pred CcccccchhhhhhhhhcCCc-EEEEEcchhHhh--hccchhhhhccHHHHhh
Q psy17795 320 DFNHIQLEKEIIMPLAGSGK-AYVYQTSKWWSQ--LKSAGSAIYANRHYLQL 368 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g~-v~~~~~~g~w~d--Igt~~dyl~an~~~l~~ 368 (523)
+|+++.+++.|. +.++...++|.. |+|++|+-.|.+.+..+
T Consensus 196 --------td~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~~ 239 (248)
T d2oi6a2 196 --------TDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSE 239 (248)
T ss_dssp --------THHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHHH
Confidence 689999998885 888888888853 77999998888766543
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.65 E-value=1.3e-15 Score=146.98 Aligned_cols=76 Identities=12% Similarity=0.277 Sum_probs=59.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-------------ceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-------------NSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~~iIg~~ 446 (523)
|++.|++++.|++++.|+|+|+|++++.||++|+|+++|+|. ++.||++|.|.++++|. ..++|++
T Consensus 5 ~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig~~ 84 (259)
T d1j2za_ 5 KTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGED 84 (259)
T ss_dssp TTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSS
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEeccc
Confidence 578888888999999999999998889999999999998885 58888888888888772 3455555
Q ss_pred CEECCCcEEc
Q psy17795 447 SKVGNWSRVE 456 (523)
Q Consensus 447 ~~Ig~~~~i~ 456 (523)
+.+++++.+.
T Consensus 85 ~~i~~~~~i~ 94 (259)
T d1j2za_ 85 NLIREFCMIN 94 (259)
T ss_dssp CEECTTCEEC
T ss_pred cccccccccc
Confidence 5555555553
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.63 E-value=1.7e-15 Score=141.35 Aligned_cols=115 Identities=15% Similarity=0.220 Sum_probs=95.9
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEe-----eeEECCCCEECCCCEEe------------------------
Q psy17795 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-----ESIILQGASIGNHSLVL------------------------ 439 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-----~s~Ig~~~~Ig~~~~I~------------------------ 439 (523)
..|+++|+|+|+|+|.+++.||++|.|+++|+|+ ...||++|.|+++|+|+
T Consensus 23 p~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T d1qrea_ 23 PVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEY 102 (210)
T ss_dssp CEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEE
T ss_pred CccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccccccccc
Confidence 4677777777777777788888888888888883 37899999999999883
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCC
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTR 515 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~ 515 (523)
.++||++|.||+++.|.+ .++||++++||.+++|.++ .||++|+|++++++.++++.+++.|..
T Consensus 103 ~~~IG~~v~IG~~~~i~g----------~~~IGd~~~IG~gs~i~~~--~IG~~~vIg~~svv~g~~i~~g~~I~~ 166 (210)
T d1qrea_ 103 AVYIGNNVSLAHQSQVHG----------PAAVGDDTFIGMQAFVFKS--KVGNNCVLEPRSAAIGVTIPDGRYIPA 166 (210)
T ss_dssp SEEECTTCEECTTCEEEE----------EEEECTTCEECTTCEEEEE--EECTTCEECTTCEEESCEECTTBEECT
T ss_pred ceeecccccccccccccc----------CCcccCCcEeeCCcccccc--ccccCcEEecCcEecCcEeCCCcEECC
Confidence 478999999999999975 5889999999999998864 679999999999998877777766654
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.63 E-value=3e-15 Score=144.43 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=84.0
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-------------ceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-------------NSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~~iIg~~ 446 (523)
|++.|++++.|++++.|+|+|+|++++.||++|+|+++++|+ ++.|++++.+.+++.+. .+.||++
T Consensus 10 p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~v~IG~~ 89 (262)
T d2jf2a1 10 PTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDR 89 (262)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSS
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCceEEECCe
Confidence 466666666677777777777777777777777777777774 36666666666666553 2677777
Q ss_pred CEECCCcEEcCCCCCCC---------------CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-------eC
Q psy17795 447 SKVGNWSRVEGTPCDPN---------------PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-------LN 504 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~~~---------------~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-------~~ 504 (523)
+.|+++|.+........ .....+.||+++++..++.+... +.||++|+||.++.| .+
T Consensus 90 v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~-~~Ig~~v~ig~~~~i~~~v~IG~~ 168 (262)
T d2jf2a1 90 NRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGH-VSVDDFAIIGGMTAVHQFCIIGAH 168 (262)
T ss_dssp CEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTCEECTTCEECTT
T ss_pred eeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccc-eeeCceEEeccCceeccccEeehh
Confidence 77777777754322100 00122333333333333333333 556777777776665 35
Q ss_pred eEEcCCcEeCCCCCCcc
Q psy17795 505 SIVLPYKELTRSFKNEI 521 (523)
Q Consensus 505 ~~v~~~~~i~~~~~~~~ 521 (523)
+.|+.++.|++++|+..
T Consensus 169 a~igagS~Vtkdvp~~~ 185 (262)
T d2jf2a1 169 VMVGGCSGVAQDVPPYV 185 (262)
T ss_dssp CEECSSCEECSBBCTTE
T ss_pred ceeeccceEeecCCccc
Confidence 66777777777877544
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.61 E-value=3.3e-15 Score=134.93 Aligned_cols=122 Identities=14% Similarity=0.156 Sum_probs=103.6
Q ss_pred cCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEcC
Q psy17795 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL-----NSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 387 ~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~-----~~iIg~~~~Ig~~~~i~~ 457 (523)
..+.||++++|++++.|.+++.||++|.|+++|+|+. +.||+++.+++++.+. .++|++++.++.++.+.+
T Consensus 11 ~~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~ 90 (172)
T d1xhda_ 11 KKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHS 90 (172)
T ss_dssp BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEES
T ss_pred cCCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccc
Confidence 4467888888888888888899999999999999954 6899999999999997 378999999999998875
Q ss_pred CCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCcc
Q psy17795 458 TPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 458 ~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~~ 521 (523)
+.|+++++++.+++|.++ ++||++|+|+++++| .+..|.|++++ .+.|+.+
T Consensus 91 -----------~~i~~~~~ig~~~~i~~g-v~IG~~~~IgagsvV~~~~~i~~~~v~-~G~Pak~ 142 (172)
T d1xhda_ 91 -----------CHIKKDALIGMGSIILDG-AEIGEGAFIGAGSLVSQGKKIPPNTLA-FGRPAKV 142 (172)
T ss_dssp -----------CEECTTCEECTTCEECTT-CEECTTCEECTTCEECTTCEECTTEEE-EETTEEE
T ss_pred -----------cccccceEEecccEeeCC-cEEcCcccccceEEEeeCeEECCCeEE-EecCcEE
Confidence 578999999999999999 788999999999999 45677777776 4555543
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.56 E-value=2.5e-14 Score=137.80 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=81.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-------------------------eEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-------------------------SIILQGASIGNH 435 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-------------------------s~Ig~~~~Ig~~ 435 (523)
+++.|++++.|+|+|+|++++.|+++++|+++|+|+.++.|++ +.||+++.|+++
T Consensus 16 ~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~v~IG~~v~ig~~ 95 (262)
T d2jf2a1 16 EGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRES 95 (262)
T ss_dssp TTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTT
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCceEEECCeeeecce
Confidence 4566666666666666666666666666666655555544432 467888888888
Q ss_pred CEEec--------eEECCCCEECCCcEE------cCCCC-C-CCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCC
Q psy17795 436 SLVLN--------SIVGRNSKVGNWSRV------EGTPC-D-PNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGE 499 (523)
Q Consensus 436 ~~I~~--------~iIg~~~~Ig~~~~i------~~~~~-~-~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~ 499 (523)
|.|.. +.||+++.|..++.| +...+ . .....++++||++++||.++.+.++ +.||+++.|+++
T Consensus 96 ~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~-v~IG~~a~igag 174 (262)
T d2jf2a1 96 VTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQF-CIIGAHVMVGGC 174 (262)
T ss_dssp CEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECSS
T ss_pred EeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccc-cEeehhceeecc
Confidence 77751 344443333333332 22111 0 0112356888888888888888888 556888888888
Q ss_pred cEEeCeEEcCCcEeCCCCCC
Q psy17795 500 LIVLNSIVLPYKELTRSFKN 519 (523)
Q Consensus 500 ~~i~~~~v~~~~~i~~~~~~ 519 (523)
++|... |.|+... .+.|+
T Consensus 175 S~Vtkd-vp~~~~~-~G~PA 192 (262)
T d2jf2a1 175 SGVAQD-VPPYVIA-QGNHA 192 (262)
T ss_dssp CEECSB-BCTTEEE-EEBTE
T ss_pred ceEeec-CCccccc-CCCCc
Confidence 888544 3444433 35554
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.56 E-value=2.5e-14 Score=131.24 Aligned_cols=136 Identities=21% Similarity=0.197 Sum_probs=89.5
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC--
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP-- 459 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~-- 459 (523)
+++|++++.|++++.|+++++|++++.||++|+|++++.|+++.||++|.|.. +.+..+.+++++.||+++.+....
T Consensus 8 s~~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~-~~i~~~~~g~~~~Ig~~~~i~~~~~i 86 (196)
T d1g97a1 8 ATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITN-SMIEESSVADGVIVGPYAHIRPNSSL 86 (196)
T ss_dssp GCEECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECS-CEEESCEECTTCEECSSCEECSSCEE
T ss_pred eEEECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCccccc-cceeeccccCcceeecceeccccccc
Confidence 34688999999999999999999999999999999999998888888887754 334333333333333333331110
Q ss_pred ----------------CCC-------------------------------CCCCCceecCCCCeecCCCeecCCcEEeCC
Q psy17795 460 ----------------CDP-------------------------------NPNKAFAKMDNPPLFNSNGKLNPSITILGD 492 (523)
Q Consensus 460 ----------------~~~-------------------------------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~ 492 (523)
... ......+.||+++++|.++.|.++ +.||+
T Consensus 87 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~g-v~IG~ 165 (196)
T d1g97a1 87 GAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAP-VELGD 165 (196)
T ss_dssp CTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESS-CEECT
T ss_pred ccceeecccccceeeecCcceEecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCC-cEECC
Confidence 000 011245667888888888888888 56688
Q ss_pred CCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 493 GVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 493 ~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
+++||++++|... |.|++.+ .+.|+++
T Consensus 166 ~s~IgagsvVtkd-vp~~~i~-~G~Pak~ 192 (196)
T d1g97a1 166 NSLVGAGSTITKD-VPADAIA-IGRGRQI 192 (196)
T ss_dssp TCEECTTCEECSC-BCTTCEE-CCCCCCC
T ss_pred CCEECCCCEECcC-cCCCCEE-EecCCEE
Confidence 8888888877443 3444444 3455543
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.50 E-value=1.4e-13 Score=126.37 Aligned_cols=115 Identities=21% Similarity=0.274 Sum_probs=76.4
Q ss_pred EECCCCEECCCCEEC--CCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCC
Q psy17795 390 YIHSSASVHPTAIVG--PNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNK 466 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~ 466 (523)
.|+|+|.|++++.|+ .++.|+++|+|++++.| |++|.|+.++.|. ++.||+++.+++++.+.+
T Consensus 76 ~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~I-----g~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g--------- 141 (193)
T d3bswa1 76 LIHKSALISPSAIVEENAGILIMPYVVINAKAKI-----EKGVILNTSSVIEHECVIGEFSHVSVGAKCAG--------- 141 (193)
T ss_dssp EECTTCEECTTSEECTTSCCEECTTCEECTTCEE-----CTTCEECTTCEECTTCEECTTCEECTTCEECT---------
T ss_pred ecCCCcEEeeeeEEccccCceEeeeeeecCCcee-----eeccccccccccceeeeccccccccccccccc---------
Confidence 344444444444442 24555555555555443 3455555555554 667788888888888876
Q ss_pred CceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCccc
Q psy17795 467 AFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEIL 522 (523)
Q Consensus 467 ~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~i 522 (523)
.++||++|+||.+++|.++ +.||++|+||+|++|... +.+++++ .++|++.|
T Consensus 142 -~v~Ig~~~~IG~~s~I~~~-v~Ig~~~~IgagsvV~~d-v~~~~~~-~G~PAk~i 193 (193)
T d3bswa1 142 -NVKIGKNCFLGINSCVLPN-LSLADDSILGGGATLVKN-QDEKGVF-VGVPAKRM 193 (193)
T ss_dssp -TCEECTTCEECTTCEECTT-CEECTTCEECTTCEECSC-BCSCCEE-CCCCCCCC
T ss_pred -cceeeccccCCceeeEcCC-eEECCCCEECCCCEECcC-CCCCcEE-EEeCCEEC
Confidence 4789999999999999999 667999999999999554 3444444 56777643
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.50 E-value=1.6e-13 Score=132.04 Aligned_cols=137 Identities=9% Similarity=0.116 Sum_probs=75.1
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-------------------------eEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-------------------------SIILQGASIGNH 435 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-------------------------s~Ig~~~~Ig~~ 435 (523)
+++.|++++.|||+|+|+++++|++++.|+++|+|+.++.|++ .++|+++.++++
T Consensus 11 ~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig~~~~i~~~ 90 (259)
T d1j2za_ 11 PKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREF 90 (259)
T ss_dssp TTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTT
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEeccccccccc
Confidence 3555555555555555555555555444444444444444432 345555666666
Q ss_pred CEEe--------ceEECCCCEECCCcEEcCCCC-CC-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCC
Q psy17795 436 SLVL--------NSIVGRNSKVGNWSRVEGTPC-DP-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGE 499 (523)
Q Consensus 436 ~~I~--------~~iIg~~~~Ig~~~~i~~~~~-~~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~ 499 (523)
+.+. ++.||+++.|+.++.+..... +. ....++++||++|+||.++.|.++ +.||++|+||++
T Consensus 91 ~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~g-v~IG~~a~Igag 169 (259)
T d1j2za_ 91 CMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQF-VRIAKGCMIAGK 169 (259)
T ss_dssp CEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTT
T ss_pred cccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecc-cEeccceeeeee
Confidence 6553 245555555555544432110 00 011246778888888888888888 566888888888
Q ss_pred cEEeCeEEcCCcEeCCCCCCc
Q psy17795 500 LIVLNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 500 ~~i~~~~v~~~~~i~~~~~~~ 520 (523)
++|... |.|+..+ .+.|+.
T Consensus 170 SvV~kd-Vp~~~i~-~G~PA~ 188 (259)
T d1j2za_ 170 SALGKD-VPPYCTV-EGNRAF 188 (259)
T ss_dssp CEECSB-BCTTEEE-ETTBTE
T ss_pred eeeccc-cccceeE-Eecccc
Confidence 888444 2444333 445543
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.49 E-value=1.1e-13 Score=124.95 Aligned_cols=123 Identities=17% Similarity=0.216 Sum_probs=97.2
Q ss_pred ecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEc
Q psy17795 386 IGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL-----NSIVGRNSKVGNWSRVE 456 (523)
Q Consensus 386 ~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~-----~~iIg~~~~Ig~~~~i~ 456 (523)
+.++.||++|+|+|++.|.+++.||++|.|+++|+|+. +.|++++.++..+.+. .+.++.++.+.......
T Consensus 8 g~~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (173)
T d1v3wa_ 8 GKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVH 87 (173)
T ss_dssp TBCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEE
T ss_pred CCCCEECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeee
Confidence 45567888888888888888999999999999999953 6799999999999886 34555555555544443
Q ss_pred CCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCcc
Q psy17795 457 GTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 457 ~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~~ 521 (523)
.+.||++++||.+++|.++ ++||++|+||+|++| .+..|.|+..+. +.|++.
T Consensus 88 -----------~~~Ig~~~~ig~~~~i~~g-v~Ig~~~vIgagsvV~~~~~i~~~~iv~-G~Pak~ 140 (173)
T d1v3wa_ 88 -----------GAKVGNYVIIGISSVILDG-AKIGDHVIIGAGAVVPPNKEIPDYSLVL-GVPGKV 140 (173)
T ss_dssp -----------SCEECSSEEECTTCEECTT-CEECSSEEECTTCEECTTCEECTTEEEE-ETTEEE
T ss_pred -----------eeecCCcccccceeeecCC-EEEcceeEEcCCcEEeCCeEeCCCCEEc-CCCceE
Confidence 3689999999999999999 778999999999999 567777777764 556543
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=7.3e-14 Score=128.70 Aligned_cols=118 Identities=16% Similarity=0.130 Sum_probs=78.1
Q ss_pred ECCCCEECCCCEE--CCCcEECCCCEECCCCEEe---eeEECCCCEECCCCEEec-eEECCCCEECCCcEEcCCCCCCCC
Q psy17795 391 IHSSASVHPTAIV--GPNVSIDDGAVIGPGVRIK---ESIILQGASIGNHSLVLN-SIVGRNSKVGNWSRVEGTPCDPNP 464 (523)
Q Consensus 391 i~~~~~I~~~~~I--~~~~~Ig~~~~I~~~~~I~---~s~Ig~~~~Ig~~~~I~~-~iIg~~~~Ig~~~~i~~~~~~~~~ 464 (523)
||++++|+|++.+ |.++.||++|.|+.+|+|. .+.||++|.||++++|.. ....+......+..+.
T Consensus 57 iG~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~-------- 128 (200)
T d1krra_ 57 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYS-------- 128 (200)
T ss_dssp CCSSCEECSCEEESCSTTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEE--------
T ss_pred CCCCCEEcCCEEEecCCccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeec--------
Confidence 4445555555444 5677788888888887773 257778888887777763 3333433333333333
Q ss_pred CCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 465 NKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 465 ~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
..+.|+++|+||.+++|.+| +.||++|+||+|++|... |.|++++ .+.|+.+
T Consensus 129 --~~v~Igd~v~IG~~~~I~~G-v~IG~~~vIgagSvV~kd-vp~~~iv-~G~PArv 180 (200)
T d1krra_ 129 --FPITIGNNVWIGSHVVINPG-VTIGDNSVIGAGSIVTKD-IPPNVVA-AGVPCRV 180 (200)
T ss_dssp --CCEEECTTCEECTTCEECTT-CEECTTCEECTTCEECSC-BCTTEEE-ETTTTEE
T ss_pred --ceEEEccCcccceeeecccc-cccCCCcEEeCCCEEeeE-cCCCcEE-EEeCCEE
Confidence 35889999999999999999 667999999999999543 2333333 3445443
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.47 E-value=3.1e-13 Score=125.74 Aligned_cols=111 Identities=23% Similarity=0.340 Sum_probs=92.7
Q ss_pred CCceEecCcEECCCCEECCCCEE----CCCcEECCCCEECCCCEEe------------------------eeEECCCCEE
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIV----GPNVSIDDGAVIGPGVRIK------------------------ESIILQGASI 432 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I----~~~~~Ig~~~~I~~~~~I~------------------------~s~Ig~~~~I 432 (523)
|++.|.+++.||+++.|+++|+| +.+++||++|.|+++|+|. .+.||++|.|
T Consensus 33 p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~~v~I 112 (210)
T d1qrea_ 33 PQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSL 112 (210)
T ss_dssp TTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEE
T ss_pred CCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeecccccc
Confidence 56677777789999999999998 4678999999999999984 2789999999
Q ss_pred CCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 433 GNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 433 g~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
|+++.|. ++.||++|.||.++.|.+ .+||++++|+.++.+ .| ++|++++.|++++++.+
T Consensus 113 G~~~~i~g~~~IGd~~~IG~gs~i~~-----------~~IG~~~vIg~~svv-~g-~~i~~g~~I~~g~~v~g 172 (210)
T d1qrea_ 113 AHQSQVHGPAAVGDDTFIGMQAFVFK-----------SKVGNNCVLEPRSAA-IG-VTIPDGRYIPAGMVVTS 172 (210)
T ss_dssp CTTCEEEEEEEECTTCEECTTCEEEE-----------EEECTTCEECTTCEE-ES-CEECTTBEECTTCEECS
T ss_pred ccccccccCCcccCCcEeeCCccccc-----------cccccCcEEecCcEe-cC-cEeCCCcEECCCcEEeC
Confidence 9999997 799999999999999975 368999999887765 34 56688888888887744
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=6.1e-13 Score=124.60 Aligned_cols=64 Identities=16% Similarity=0.318 Sum_probs=55.0
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHH
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFV 160 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l 160 (523)
|...||||||| .||||+. ..||+|++++|+|||+|+++.+.+++++++|+||+++....+.+.+
T Consensus 2 M~i~AIILAaG--~gtRm~~---~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~ 65 (225)
T d1i52a_ 2 LDVCAVVPAAG--FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLP 65 (225)
T ss_dssp CCEEEEEEECC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSG
T ss_pred CCEEEEEeCCC--cceeCCC---CCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhhhhhhhh
Confidence 56679999999 9999986 8999999999999999999999887689999999987554444433
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1.4e-13 Score=106.74 Aligned_cols=71 Identities=20% Similarity=0.325 Sum_probs=67.2
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
...|.+++.||+++.|++++.|++++.||++|.||++|.|.+|.||+++.|+++|+|++|+||++|.||+.
T Consensus 8 ~~~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGPf 78 (78)
T d1fxja1 8 RFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPF 78 (78)
T ss_dssp GEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEESCC
T ss_pred eEEEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEECcC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999974
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.42 E-value=3.3e-13 Score=116.55 Aligned_cols=103 Identities=14% Similarity=0.294 Sum_probs=77.2
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECC-------------------CCEECCCCEEeceEECCCCE
Q psy17795 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQ-------------------GASIGNHSLVLNSIVGRNSK 448 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~-------------------~~~Ig~~~~I~~~iIg~~~~ 448 (523)
++.|+++|.|+ ++.| .+++||++|.|++++.|+++++++ ++.||++|+|.+++|+++|.
T Consensus 14 ~s~Ig~g~~I~-~~~i-~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~ 91 (135)
T d1yp2a1 14 DSVIGEGCVIK-NCKI-HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNAR 91 (135)
T ss_dssp EEEECTTCEEE-EEEE-ESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCE
T ss_pred eCEECCCCEEe-CCEE-eccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCE
Confidence 46788888886 4445 567888888888888887765544 47899999999999999999
Q ss_pred ECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 449 VGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 449 Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
||+++.+.+.. .+.+.+.++.+..+.+|.++||++++|++|++|
T Consensus 92 IG~g~~i~~~~----------~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI 135 (135)
T d1yp2a1 92 IGDNVKIINKD----------NVQEAARETDGYFIKSGIVTVIKDALIPSGIII 135 (135)
T ss_dssp ECTTCEECCSS----------CCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred ECCCcEECCCc----------ccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence 99999997742 233344444455555666778999999998864
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1e-12 Score=121.06 Aligned_cols=137 Identities=18% Similarity=0.253 Sum_probs=84.3
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEEC-----------------CCCEECCCCEE------
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIIL-----------------QGASIGNHSLV------ 438 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig-----------------~~~~Ig~~~~I------ 438 (523)
.+.|++.+.|++++.|+++++|++++.||++|+|+++|+|+...++ .++.++.++.+
T Consensus 8 ~~~i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~ 87 (201)
T d2oi6a1 8 RFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAEL 87 (201)
T ss_dssp GEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEE
T ss_pred eEEECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccceee
Confidence 3468888999999999999999888999999999888888754333 33333332222
Q ss_pred ------------eceEECCCCEECCCcEEcC-----------CCC---CCCCCCCceecCCCCeecCCCeecCCcEEeCC
Q psy17795 439 ------------LNSIVGRNSKVGNWSRVEG-----------TPC---DPNPNKAFAKMDNPPLFNSNGKLNPSITILGD 492 (523)
Q Consensus 439 ------------~~~iIg~~~~Ig~~~~i~~-----------~~~---~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~ 492 (523)
..+.+|+++.+++.+.+.+ ... ........+.|++++++|.++.|.++ +.||+
T Consensus 88 ~~~~~i~~~~~~~~~~ig~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~-v~IG~ 166 (201)
T d2oi6a1 88 LEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVGK 166 (201)
T ss_dssp CTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESS-EEECT
T ss_pred eeeeeecceeeeeeeeeCCCeEEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCC-cEECC
Confidence 1223333333332222211 000 00122345778888888888888888 66788
Q ss_pred CCEECCCcEEeCeEEcCCcEeCCCCCCc
Q psy17795 493 GVTVPGELIVLNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 493 ~~~Ig~~~~i~~~~v~~~~~i~~~~~~~ 520 (523)
+|.||++++|...+ .|++.+-.++|..
T Consensus 167 ~s~IgagsvV~kdV-p~~si~vg~~~~~ 193 (201)
T d2oi6a1 167 GATIAAGTTVTRNV-GENALAISRVPQT 193 (201)
T ss_dssp TCEECTTCEECSCB-CTTCEECCCCCCC
T ss_pred CCEECCCCEEeeec-CCCCEEEecccce
Confidence 88888888885543 5666555555543
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.38 E-value=1.6e-11 Score=114.66 Aligned_cols=52 Identities=15% Similarity=0.331 Sum_probs=47.5
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCC
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYP 152 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~ 152 (523)
||||||| .|+||+. ..||+|++|+|+|||+|+|+.+.++.++++|+|+++..
T Consensus 6 AIILAaG--~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~ 57 (221)
T d1vpaa_ 6 AILLAAG--KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRRE 57 (221)
T ss_dssp EEEEECC--CCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGG
T ss_pred EEEccCc--CcccCCC---CCCcceeEECCEEHHHHHHHHHHhccccccceEEecch
Confidence 7999999 9999986 78999999999999999999998866789999998753
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.35 E-value=6.4e-12 Score=117.92 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=50.6
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
..+|||||| .|+||+. ..||+|++|+|+|||+|+|+.+.+++.+++|+|+++....+ ++.+....++..+.+
T Consensus 5 i~~IIlAaG--~GtRm~~---~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~~---~~~~~~~~~~~~~~~ 76 (226)
T d1w77a1 5 VSVILLAGG--QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRD---IFEEYEESIDVDLRF 76 (226)
T ss_dssp EEEEEECCC------------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGTH---HHHTTTTSCSSEEEE
T ss_pred eEEEEeCCc--cCccCcC---CCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhhhh---hhhcccccccccccc
Confidence 358999999 9999987 89999999999999999999999877789999999753322 233322234556655
Q ss_pred Ee
Q psy17795 174 LQ 175 (523)
Q Consensus 174 ~~ 175 (523)
+.
T Consensus 77 ~~ 78 (226)
T d1w77a1 77 AI 78 (226)
T ss_dssp EC
T ss_pred cc
Confidence 54
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.34 E-value=5.1e-12 Score=115.47 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=72.3
Q ss_pred eEec-CcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCC
Q psy17795 384 KTIG-DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCD 461 (523)
Q Consensus 384 ~i~~-~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~ 461 (523)
.|+| .++|++++.|++++.|+++++|++++.||++|.|+. ++|. ++.||+++.|.++.+ ....+++++.|+.....
T Consensus 3 ~i~P~s~~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~-~~~IG~~~~I~~~~i-~~~~~g~~~~Ig~~~~i 80 (196)
T d1g97a1 3 FVNPEATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVV-DSTIGAGAVITNSMI-EESSVADGVIVGPYAHI 80 (196)
T ss_dssp ESCGGGCEECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEE-SCEECTTCEECSCEE-ESCEECTTCEECSSCEE
T ss_pred EeCCCeEEECCCcEECCCCEECCCCEECCCcEECCCceEcCceEee-eeecccCccccccce-eeccccCcceeecceec
Confidence 3455 335666666666666666666666666666666643 4443 355555555555444 34456667777542211
Q ss_pred CCCCCCceecCCCCeec-----------------C-----------CCee------------cCCcEEeCCCCEECCCcE
Q psy17795 462 PNPNKAFAKMDNPPLFN-----------------S-----------NGKL------------NPSITILGDGVTVPGELI 501 (523)
Q Consensus 462 ~~~~~~~v~I~~~~~ig-----------------~-----------~~~i------------~~g~~iIG~~~~Ig~~~~ 501 (523)
...+.++.++.++ . +..+ ..+.++||++|.||.++.
T Consensus 81 ----~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~ 156 (196)
T d1g97a1 81 ----RPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNST 156 (196)
T ss_dssp ----CSSCEECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCE
T ss_pred ----ccccccccceeecccccceeeecCcceEecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeE
Confidence 1112222221110 0 0000 112355677777777765
Q ss_pred E-------eCeEEcCCcEeCCCCCCccc
Q psy17795 502 V-------LNSIVLPYKELTRSFKNEIL 522 (523)
Q Consensus 502 i-------~~~~v~~~~~i~~~~~~~~i 522 (523)
| .+++|++++.|++++|+..+
T Consensus 157 I~~gv~IG~~s~IgagsvVtkdvp~~~i 184 (196)
T d1g97a1 157 IIAPVELGDNSLVGAGSTITKDVPADAI 184 (196)
T ss_dssp EESSCEECTTCEECTTCEECSCBCTTCE
T ss_pred EcCCcEECCCCEECCCCEECcCcCCCCE
Confidence 5 56788899999999987654
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=1.6e-12 Score=117.71 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=74.5
Q ss_pred CCCcEECCCCEECCCCEEee---eEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecC
Q psy17795 404 GPNVSIDDGAVIGPGVRIKE---SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNS 479 (523)
Q Consensus 404 ~~~~~Ig~~~~I~~~~~I~~---s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~ 479 (523)
|.++.||++|.|+.+|+|.+ ..||++|.|+++|.|. .+.+++.+....++.+.+ .++||++++||.
T Consensus 70 G~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~----------~v~Ig~~~~iG~ 139 (182)
T d1ocxa_ 70 GYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGK----------PVTIGNNVWIGG 139 (182)
T ss_dssp STTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEEC----------CEEECTTCEECT
T ss_pred ccceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcc----------eeEECceEeeCc
Confidence 45555555555555555533 4688888888888887 455666666666666654 588999999999
Q ss_pred CCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 480 NGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 480 ~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
+++|.+| +.||++|+||+|++|... | |...+-.+.|+.+
T Consensus 140 ~~~I~~G-v~IG~~~vIgagsvV~kd-v-p~~~i~~G~PAk~ 178 (182)
T d1ocxa_ 140 RAVINPG-VTIGDNVVVASGAVVTKD-V-PDNVVVGGNPARI 178 (182)
T ss_dssp TCEECTT-CEECTTCEECTTCEECSC-B-CSSEEEETTTTEE
T ss_pred eeeccCc-EEECCCCEECCCCEEccC-C-CCCeEEEeeCCEE
Confidence 9999999 567999999999999544 2 3334444566654
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=3.1e-12 Score=98.96 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=50.5
Q ss_pred EECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 402 IVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 402 ~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
.|.+++.||++|.|+++++|+ ++.||++|.||++|.|.+|.||+++.|++++.|.+
T Consensus 10 ~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~ 66 (78)
T d1fxja1 10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVED 66 (78)
T ss_dssp EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEES
T ss_pred EEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEEC
Confidence 466778888888888888885 58999999999999999999999999999999976
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=99.29 E-value=7.9e-12 Score=117.00 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=68.0
Q ss_pred EecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCC
Q psy17795 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPN 463 (523)
Q Consensus 385 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~ 463 (523)
+.|++.+-.+++|++++++ .+++|.-+++||+ +|.|..+++|. .+.||++|.|+.|+.|+|... .
T Consensus 105 vvPga~VR~GayI~~~vVl-mps~VNigA~ig~-----------~~midt~a~vgs~aqIG~~vhis~g~~igGvle--p 170 (274)
T d3tdta_ 105 VVPPATVRQGAFIARNTVL-MPSYVNIGAYVDE-----------GTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLE--P 170 (274)
T ss_dssp ECTTCEEBTTCEECTTCEE-CSEEECTTCEECT-----------TCEECTTEEECTTCEECTTCEECTTCEECCSBT--T
T ss_pred eCCCceeccCcEECCCcEE-eeeEeccccEEcC-----------CcEEcccceecceeEECCCeEECCCcEEEeccc--c
Confidence 3444444444444444433 2344444444444 44444444444 456778888888888876422 2
Q ss_pred CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 464 PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 464 ~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
.....+.|+|+|+||+++.|.+| ++||++++|++|++|..
T Consensus 171 ~~~~p~iIed~~~IGa~s~v~eg-v~Vg~~avi~~gv~i~~ 210 (274)
T d3tdta_ 171 LQANPTIIEDNCFIGARSEVVEG-VIVEEGSVISMGVYLGQ 210 (274)
T ss_dssp BCSSCCEECTTCEECTTCEECTT-CEECTTCEECTTCEECT
T ss_pred CCCCCcEEecCcEeccCceEecC-EEecCceEeccceEEec
Confidence 33467889999999999999999 77799999999999843
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=99.27 E-value=4.4e-13 Score=123.97 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=33.9
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
.+.++||++|+||.+++|.+| +.||++|+||+|++|..
T Consensus 111 ~g~v~IGd~v~IG~~~~I~~g-v~IG~~~~IgagSvV~k 148 (203)
T d1mr7a_ 111 KGDTIIGNDVWIGKDVVIMPG-VKIGDGAIVAANSVVVK 148 (203)
T ss_dssp CCCEEECSSCEECTTCEECTT-CEECTTCEECTTCEECS
T ss_pred ccCeEECCEEEECCceeEEeE-EEEcCCCEEecCeEEee
Confidence 457899999999999999999 67799999999999943
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.25 E-value=7.7e-11 Score=110.32 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=42.9
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHh
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLD 162 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~ 162 (523)
-||||||| .|+||+. .+||+|++|+|+|||+|+++.+.++..+++++||+.... .+.+++..
T Consensus 5 iAIIlAaG--~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~-~~~~~~~~ 66 (226)
T d1vgwa_ 5 IALIPAAG--IGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED-TFADKVQT 66 (226)
T ss_dssp EEEEECC---------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC-STHHHHHH
T ss_pred EEEEeCCC--CcccCCc---CCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhh-hhhhhhcc
Confidence 38999999 9999985 789999999999999999999998767788888886543 44455544
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.23 E-value=6e-11 Score=108.44 Aligned_cols=93 Identities=14% Similarity=0.227 Sum_probs=62.2
Q ss_pred CCceEecCcEE--CCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEc
Q psy17795 381 SQCKTIGDVYI--HSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVE 456 (523)
Q Consensus 381 ~~~~i~~~~~i--~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~ 456 (523)
|++.|.+++.| ++++.|++++.|++++.||++|.|+.++.|+ ++.||++|.+++++.+. ++.||++|.||.++.|.
T Consensus 79 p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~ 158 (193)
T d3bswa1 79 KSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL 158 (193)
T ss_dssp TTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeeccccccccccccccccceeeccccCCceeeEc
Confidence 45566666666 3356666666666666666666666666664 36666777777766665 57888888888888776
Q ss_pred CCCCCCCCCCCceecCCCCeecCCCee
Q psy17795 457 GTPCDPNPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 457 ~~~~~~~~~~~~v~I~~~~~ig~~~~i 483 (523)
+ .++||+++.||++++|
T Consensus 159 ~----------~v~Ig~~~~IgagsvV 175 (193)
T d3bswa1 159 P----------NLSLADDSILGGGATL 175 (193)
T ss_dssp T----------TCEECTTCEECTTCEE
T ss_pred C----------CeEECCCCEECCCCEE
Confidence 5 4677777777766644
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.19 E-value=4.7e-10 Score=105.73 Aligned_cols=218 Identities=14% Similarity=0.138 Sum_probs=124.4
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
+||+|.| .++|+. .|+|++|+|+|||+|+++++.++.++++|+|++.. +.+.+.... ++.++.+..
T Consensus 5 ~iIpAR~--~SkRl~------~Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~--~~i~~~~~~----~~~~~~~~~ 70 (245)
T d1h7ea_ 5 IVIPARY--GSSRLP------GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA----FGGKAIMTR 70 (245)
T ss_dssp EEEECCS--CCSSST------TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH----TTCEEEECC
T ss_pred EEEcCCC--CCcCCC------CccccccCCccHHHHHHHHHHhCCCCCeEEEeccc--ccchhhhhh----cCceEEEec
Confidence 7888877 788873 49999999999999999999988889999998865 344444443 555554433
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc--hHH---HHHHHHhcCCcceEEEEEEe
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR--SDV---VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~--~D~---l~~~h~~~~~~~~~tv~~~~ 245 (523)
..... +.+.+. ...+. .|. ++.+. .+ .+. +.+.+..... .....+...
T Consensus 71 ~~~~~------------------~~~~~~~~~~~~~--~d~-vv~l~~~~p~~~~~~i~~~~~~~~~~~~-~~~~~~~~~ 128 (245)
T d1h7ea_ 71 NDHES------------------GTDRLVEVMHKVE--ADI-YINLQGDEPMIRPRDVETLLQGMRDDPA-LPVATLCHA 128 (245)
T ss_dssp SCCSS------------------HHHHHHHHHHHSC--CSE-EEECCTTCTTCCHHHHHHHHHHHHHCTT-CCEEEEEEE
T ss_pred Ccccc------------------ccHHHHHHHHhcC--CCE-EEEecchhhhcccccchhhhhccccccc-ccccccccc
Confidence 32221 222222 44444 344 55554 12 122 5565555441 222222222
Q ss_pred eCC-CCCc-ceeEEEEcCCCCcEEEEeecCCC------cccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCC
Q psy17795 246 ATR-QQSV-YYGCIVRKQQTSEISHYVEKPST------FVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGK 317 (523)
Q Consensus 246 ~~~-~~~~-~~g~v~~d~~~~~V~~~~ekp~~------~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~ 317 (523)
... .... .......... +.+..+...+.. .......+|+|.|+++.+..+....... .+
T Consensus 129 ~~~~~~~~~~~vk~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~s~---~e--------- 195 (245)
T d1h7ea_ 129 ISAAEAAEPSTVKVVVNTR-QDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESM---PE--------- 195 (245)
T ss_dssp ECHHHHTCTTSCEEEECTT-CBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCH---HH---------
T ss_pred cccccccCCcceeeccchh-hhhhhhhhhhhhhhhcccccccceeeeeEEeeeccccccccccCCh---hh---------
Confidence 211 0011 1122333333 566666655432 2345678899999999877654321111 00
Q ss_pred CCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhh
Q psy17795 318 DTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQL 368 (523)
Q Consensus 318 ~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~ 368 (523)
....+ |.++.+-....+.++..++.+.+|+|++||..+...+...
T Consensus 196 ----~~e~i--e~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~~~ 240 (245)
T d1h7ea_ 196 ----QAESL--EQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQE 240 (245)
T ss_dssp ----HHHTC--TTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHH
T ss_pred ----hhhhH--HHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHhh
Confidence 00111 3344333333588888877788999999999887766544
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=3.3e-11 Score=110.62 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=9.9
Q ss_pred ceEECCCCEECCCcEEcC
Q psy17795 440 NSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~ 457 (523)
.+.||++|.||.+|.|.+
T Consensus 130 ~v~Igd~v~IG~~~~I~~ 147 (200)
T d1krra_ 130 PITIGNNVWIGSHVVINP 147 (200)
T ss_dssp CEEECTTCEECTTCEECT
T ss_pred eEEEccCcccceeeeccc
Confidence 345555555555555543
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.18 E-value=9.8e-11 Score=104.92 Aligned_cols=105 Identities=13% Similarity=0.289 Sum_probs=77.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCC---cEECCCCEECCCCEEee-----eEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+.+.|.+++.||+++.|+++++|+.. +.||+++.+++++.+.. ++||+++.++.++.+.++.|++++.||.+
T Consensus 23 ~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i~~~~~ig~~ 102 (172)
T d1xhda_ 23 DYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMG 102 (172)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTT
T ss_pred CCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccccccccceEEecc
Confidence 45666666677777777777766432 57777777777877755 68999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
+.|.+ .++||++++||+++.| -.+..|++++++
T Consensus 103 ~~i~~----------gv~IG~~~~IgagsvV-------~~~~~i~~~~v~ 135 (172)
T d1xhda_ 103 SIILD----------GAEIGEGAFIGAGSLV-------SQGKKIPPNTLA 135 (172)
T ss_dssp CEECT----------TCEECTTCEECTTCEE-------CTTCEECTTEEE
T ss_pred cEeeC----------CcEEcCcccccceEEE-------eeCeEECCCeEE
Confidence 99976 3677777777666543 444455555555
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.14 E-value=1.8e-09 Score=101.74 Aligned_cols=212 Identities=14% Similarity=0.040 Sum_probs=125.6
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
|||+|.| .++|+ | .|+|.+|+|+|||+|+++.+.+. ++++|+|++.. +.+.++..+ ++.++.+..
T Consensus 4 ~iIpAR~--gSkri-p-----~KnL~~i~GkpLI~~~i~~a~~s-~i~~iiVsTd~--~~i~~~~~~----~g~~v~~~~ 68 (246)
T d1vh1a_ 4 VIIPARY--ASTRL-P-----GKPLVDINGKPMIVHVLERARES-GAERIIVATDH--EDVARAVEA----AGGEVCMTR 68 (246)
T ss_dssp EEEECCC--CCC---C-----CTTTCEETTEEHHHHHHHHHHHT-TCSEEEEEESC--HHHHHHHHH----TTCEEEECC
T ss_pred EEEecCC--CCcCC-C-----CchhhhcCCccHHHHHHHHHHHc-CCCcEEEEecC--ccccchhhc----ccccceeec
Confidence 8999988 67777 4 49999999999999999999986 89999999864 456666655 566776666
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc--h-HH--HHHHHHhcCCcceEEEEEEe
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR--S-DV--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~--~-D~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
+....+ +..... ..+.....+. ++.+. .. . ++ +.+.+.... .+......+
T Consensus 69 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~-i~~~~~d~pl~~~~~i~~~i~~~~~~~--~~~~~~~~~ 128 (246)
T d1vh1a_ 69 ADHQSG-----------------TERLAEVVEKCAFSDDTV-IVNVQGDEPMIPATIIRQVADNLAQRQ--VGMATLAVP 128 (246)
T ss_dssp -----C-----------------HHHHHHHHHHTTCCTTCE-EEECCTTCTTCCHHHHHHHHHHHHHSS--SSEEEEEEE
T ss_pred cccccc-----------------chHHHHHHHhhcccccce-eeeeccccccchhhHHHHHhhhhcccc--ccccccccc
Confidence 554443 333333 2222222333 44443 11 1 22 566666665 555554444
Q ss_pred eCCCC---CcceeEEEEcCCCCcEEEEeecCC-------------CcccceeeeeEEEeeHHHHHHHHHhhccc-ccccc
Q psy17795 246 ATRQQ---SVYYGCIVRKQQTSEISHYVEKPS-------------TFVSTLVNCGVYLFSLDIFQNIAAVFQSK-QDEFY 308 (523)
Q Consensus 246 ~~~~~---~~~~g~v~~d~~~~~V~~~~ekp~-------------~~~~~l~~~Giyif~~~il~~l~~~~~~~-~~e~~ 308 (523)
..... ......+..+.+ |++..|.+.+. .....+...|+|+|+++.|.......... +...+
T Consensus 129 ~~~~~~~~~~~~vk~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~s~~E~~e~ 207 (246)
T d1vh1a_ 129 IHNAEEAFNPNAVKVVLDAE-GYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEM 207 (246)
T ss_dssp CCCHHHHTCTTSCEEEECTT-SBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHT
T ss_pred ccchhcccCCCcceeeeccc-CcccccccccchhhhhhhhhhhhccchhhheecceeeechhhhhhhccCCCChHHHHHh
Confidence 32111 111224556766 88888876532 12345678899999999887665532221 11111
Q ss_pred cccccccCCCCCcccccchhhhhhhhhcCC-cEEEEEcch-hHhhhccchhhhhccH
Q psy17795 309 NGNYMVNGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSK-WWSQLKSAGSAIYANR 363 (523)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g-~w~dIgt~~dyl~an~ 363 (523)
+ |.++.+ ..| .+.++..+. ...+|+|++|+-.|..
T Consensus 208 -----------------l--e~lR~i-~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k 244 (246)
T d1vh1a_ 208 -----------------L--EQLRVL-WYGEKIHVAVAQEVPGTGVDTPEDLERVRA 244 (246)
T ss_dssp -----------------C--TTHHHH-HTTCCEEEEECSSCCCCCCCSHHHHHHHHH
T ss_pred -----------------H--HHHHHH-HCCCceEEEEecCCCCCCCCCHHHHHHHHh
Confidence 1 344433 445 488777655 3469999999877654
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=99.12 E-value=3.5e-10 Score=105.72 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=80.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe---------ceEECCCCEEC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL---------NSIVGRNSKVG 450 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~---------~~iIg~~~~Ig 450 (523)
|++.+...++|++++++.| +.|.-+++||++|.|..+++|++ +.||++|.|+.++.|. .++|+++|.||
T Consensus 107 Pga~VR~GayI~~~vVlmp-s~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IG 185 (274)
T d3tdta_ 107 PPATVRQGAFIARNTVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIG 185 (274)
T ss_dssp TTCEEBTTCEECTTCEECS-EEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEEC
T ss_pred CCceeccCcEECCCcEEee-eEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEec
Confidence 6899999999999998875 68999999999999999999986 6999999999999996 46799999999
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
.+|.|.. .+.|++++.|+++++|...
T Consensus 186 a~s~v~e----------gv~Vg~~avi~~gv~i~~~ 211 (274)
T d3tdta_ 186 ARSEVVE----------GVIVEEGSVISMGVYLGQS 211 (274)
T ss_dssp TTCEECT----------TCEECTTCEECTTCEECTT
T ss_pred cCceEec----------CEEecCceEeccceEEecc
Confidence 9999975 2667777666666655553
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.09 E-value=4.2e-10 Score=100.75 Aligned_cols=104 Identities=21% Similarity=0.317 Sum_probs=56.9
Q ss_pred CceEecCcEECCCCEECCCCEEC---CCcEECCCCEECCCCEEee-----eEECCCCEECCCCEEeceEECCCCEECCCc
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVLNSIVGRNSKVGNWS 453 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~ 453 (523)
++.|.+++.|++++.|++++.|+ .++.|+++|.++..+.+.. +.++.++.+........+.||++|.||.+|
T Consensus 22 ~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~ 101 (173)
T d1v3wa_ 22 NAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISS 101 (173)
T ss_dssp TSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTTC
T ss_pred CCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeecCCccccccee
Confidence 34444444444444444444443 2334455555555555532 455666666666666678888888888888
Q ss_pred EEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 454 RVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 454 ~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
.|.+ .++||++++||+++ +|..++.|++++++
T Consensus 102 ~i~~----------gv~Ig~~~vIgags-------vV~~~~~i~~~~iv 133 (173)
T d1v3wa_ 102 VILD----------GAKIGDHVIIGAGA-------VVPPNKEIPDYSLV 133 (173)
T ss_dssp EECT----------TCEECSSEEECTTC-------EECTTCEECTTEEE
T ss_pred eecC----------CEEEcceeEEcCCc-------EEeCCeEeCCCCEE
Confidence 7765 25556655555443 33444445555555
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.09 E-value=7.1e-11 Score=101.54 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=37.2
Q ss_pred CEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEE
Q psy17795 401 AIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKV 449 (523)
Q Consensus 401 ~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~I 449 (523)
+.+ .+++||++|.|+ ++.|.+|+||++|.||+++.|.++.+++++.+
T Consensus 10 ~~i-~~s~Ig~g~~I~-~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~ 56 (135)
T d1yp2a1 10 ADV-TDSVIGEGCVIK-NCKIHHSVVGLRSCISEGAIIEDSLLMGADYY 56 (135)
T ss_dssp EEE-EEEEECTTCEEE-EEEEESCEECTTCEECTTCEEESCEECCCSSC
T ss_pred CEE-EeCEECCCCEEe-CCEEeccccCCcEEECCCCEEEcCEEECCCEE
Confidence 444 468889999996 67788899999999999999997777666433
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.08 E-value=4.2e-09 Score=99.55 Aligned_cols=218 Identities=14% Similarity=0.072 Sum_probs=129.3
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYL 174 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 174 (523)
.+||+|.| .++|+ | .|+|.+|+|+|||+|+++.+.+. ++++|+|++.. +++.+...+ ++..+.+.
T Consensus 3 ~~iIpAR~--gSkRl-p-----~Knl~~i~GkpLI~~~i~~a~~s-~i~~IiVsTd~--~~i~~~~~~----~~~~~~~~ 67 (255)
T d1vica_ 3 TVIIPARF--ASSRL-P-----GKPLADIKGKPMIQHVFEKALQS-GASRVIIATDN--ENVADVAKS----FGAEVCMT 67 (255)
T ss_dssp EEEEECCC--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEESC--HHHHHHHHH----TTCEEEEC
T ss_pred EEEEecCC--CCCCC-C-----CchhhhhCCcCHHHHHHHHHHHC-CCCeEEEEcCC--cccchhhhh----hcccccee
Confidence 38999988 67787 4 49999999999999999999986 89999888864 345554444 56677676
Q ss_pred ecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc---hHH--HHHHHHhcCCcceEEEEEE
Q psy17795 175 QEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR---SDV--VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~---~D~--l~~~h~~~~~~~~~tv~~~ 244 (523)
.+....| ++.+.. ..+.....+. ++.+. .. .++ +++.+.... ...+....
T Consensus 68 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~-iv~~~~d~p~~~~~~i~~~i~~~~~~~--~~~~~~~~ 127 (255)
T d1vica_ 68 SVNHNSG-----------------TERLAEVVEKLAIPDNEI-IVNIQGDEPLIPPVIVRQVADNLAKFN--VNMASLAV 127 (255)
T ss_dssp CCSSCCH-----------------HHHHHHHHHHTTCCTTCE-EEECCTTCTTCCHHHHHHHHHHHHHHT--CSEEEEEE
T ss_pred eeccCCc-----------------chhhHHHHHHhhccCCce-EEEEecchhhhhhhhhhhhhhhccccc--ccccceee
Confidence 6655544 444444 2233332333 44443 11 122 666666655 44454444
Q ss_pred eeCCC---CCcceeEEEEcCCCCcEEEEeecCC-----------------CcccceeeeeEEEeeHHHHHHHHHhhcccc
Q psy17795 245 EATRQ---QSVYYGCIVRKQQTSEISHYVEKPS-----------------TFVSTLVNCGVYLFSLDIFQNIAAVFQSKQ 304 (523)
Q Consensus 245 ~~~~~---~~~~~g~v~~d~~~~~V~~~~ekp~-----------------~~~~~l~~~Giyif~~~il~~l~~~~~~~~ 304 (523)
..... ..........+.+ +++..+.+.+. .........|+|+|+++.+..+........
T Consensus 128 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~l 206 (255)
T d1vica_ 128 KIHDAEELFNPNAVKVLTDKD-GYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQL 206 (255)
T ss_dssp ECCCHHHHTCTTSCEEEECTT-SBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHH
T ss_pred eccchhhccCccceeeeeccC-CcccccccccccccchhhhhccchhhcccccchheeeeeecccHHHHhhhhccCCChh
Confidence 33211 1122334455665 78888776542 123445678999999998876654322110
Q ss_pred cccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcch-hHhhhccchhhhhccHHHH
Q psy17795 305 DEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSK-WWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 305 ~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g-~w~dIgt~~dyl~an~~~l 366 (523)
| ...++ +.+..+-....+..+..+. .+.||+|++|+..|...+-
T Consensus 207 -e---------------~~e~l--e~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilk 251 (255)
T d1vica_ 207 -E---------------NLEKL--EQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILA 251 (255)
T ss_dssp -H---------------HHHTC--TTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred -H---------------HHHhH--HHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHH
Confidence 0 00011 2233333333477766544 4569999999988866543
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.02 E-value=2.8e-10 Score=105.00 Aligned_cols=94 Identities=14% Similarity=0.195 Sum_probs=59.6
Q ss_pred eEECCCCEECCCCEEe----ceEECCCCEECCCcEEcCCC-----CCCCCCCCceecCCCCeecCCCeecCCcEEeCCCC
Q psy17795 424 SIILQGASIGNHSLVL----NSIVGRNSKVGNWSRVEGTP-----CDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGV 494 (523)
Q Consensus 424 s~Ig~~~~Ig~~~~I~----~~iIg~~~~Ig~~~~i~~~~-----~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~ 494 (523)
++||++|.|+++|+|. .+.+++++.+.+.+...... .......+.++||++|+||.+++|.+| +.||++|
T Consensus 55 v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~g-v~IG~~~ 133 (208)
T d1xata_ 55 LVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPG-VRVGHGA 133 (208)
T ss_dssp EEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTT-CEECTTC
T ss_pred eEECCCCEECCCCEEeccCCCcccccceeecccccccccccccccccCccccCCEEEcCCeEECccccccCC-eEeCCCC
Confidence 5566777777776663 23344444444433332211 011223457999999999999999999 7779999
Q ss_pred EECCCcEEe-----CeEEc--CCcEeCCCCC
Q psy17795 495 TVPGELIVL-----NSIVL--PYKELTRSFK 518 (523)
Q Consensus 495 ~Ig~~~~i~-----~~~v~--~~~~i~~~~~ 518 (523)
+||++++|. ++++. |.+.|+++.+
T Consensus 134 vIgagSvVtkdvp~~si~~G~PAk~ik~R~~ 164 (208)
T d1xata_ 134 IIGSRALVTGDVEPYAIVGGNPARTIRKRFS 164 (208)
T ss_dssp EECTTCEECSCBCTTEEEETTTTEEEEESSC
T ss_pred EEeCceEEeecCCcCcEEEecCCEEEeccCC
Confidence 999999993 33333 5555555443
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.98 E-value=1.1e-09 Score=102.98 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=39.0
Q ss_pred CceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCccc
Q psy17795 467 AFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEIL 522 (523)
Q Consensus 467 ~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~i 522 (523)
.+++||++++||++++|.++ ..||++|+||+|++|... |.|++++ .++|+.+|
T Consensus 188 ~~~~Ig~~v~IGaga~Ilg~-v~IG~~a~IgAgsvV~kd-Vp~~~vv-~G~PAr~I 240 (241)
T d1ssqa_ 188 RHPKVREGVMIGAGAKILGN-IEVGKYAKIGANSVVLNP-VPEYATA-AGVPARIV 240 (241)
T ss_dssp CSCEECTTCEECTTCEEESS-CEECTTCEECTTCEECSC-BCTTCEE-ETTTTEEC
T ss_pred CCCccCCCeEECCCCEEcCC-cEECCCCEECCCCEECCC-CCCCCEE-EecCcEEe
Confidence 35667777777777777777 556999999999999655 3555544 57787765
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=5.1e-10 Score=100.95 Aligned_cols=89 Identities=11% Similarity=0.159 Sum_probs=62.2
Q ss_pred EecCcEECCCCEECCCCEEC--CCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCC
Q psy17795 385 TIGDVYIHSSASVHPTAIVG--PNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPC 460 (523)
Q Consensus 385 i~~~~~i~~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~ 460 (523)
++.++.||++++|+++++|. ..+.||++|.|+++|.|.+ +.+++.+....++.+. .++||++|.||.+|.|.+
T Consensus 69 ~G~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~--- 145 (182)
T d1ocxa_ 69 YGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINP--- 145 (182)
T ss_dssp SSTTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECT---
T ss_pred eccceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccC---
Confidence 45667777777777777773 4568888888888888855 4455555566666655 567888888888888865
Q ss_pred CCCCCCCceecCCCCeecCCCee
Q psy17795 461 DPNPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 461 ~~~~~~~~v~I~~~~~ig~~~~i 483 (523)
.++||+++.||++++|
T Consensus 146 -------Gv~IG~~~vIgagsvV 161 (182)
T d1ocxa_ 146 -------GVTIGDNVVVASGAVV 161 (182)
T ss_dssp -------TCEECTTCEECTTCEE
T ss_pred -------cEEECCCCEECCCCEE
Confidence 3667777777766644
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=98.92 E-value=7.4e-10 Score=103.67 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=50.4
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCC
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYP 152 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~ 152 (523)
|+..||||||| +|+||++++. .||+|++|+|+|||+|+++++.+. +++++++++++.
T Consensus 1 M~~~avIlA~G--~~~r~~r~g~-~~K~L~~i~Gkpli~~~~~~l~~~-~~~~vvv~~~~~ 57 (231)
T d2dpwa1 1 MRPSAIVLAGG--KEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAA-GLSPVYVGENPG 57 (231)
T ss_dssp CCCEEEEECCC--BCSGGGTTTC-SBGGGSEETTEETHHHHHHHHHHT-TCEEEEESCCSS
T ss_pred CCceEEEECCC--CCCCCCCCCC-CCceeeEECCeeHHHHHHHHHHhc-CCCeEEeeeecc
Confidence 45569999999 9999999874 479999999999999999999986 999998888764
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=3.5e-09 Score=96.73 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=26.0
Q ss_pred EEeCCCCEECCCcEE-------eCeEEcCCcEeCCCCCCccc
Q psy17795 488 TILGDGVTVPGELIV-------LNSIVLPYKELTRSFKNEIL 522 (523)
Q Consensus 488 ~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~~~~~~~~i 522 (523)
++||++|.||.++.| .+++|++++.|++++|...+
T Consensus 144 ~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV~kdVp~~si 185 (201)
T d2oi6a1 144 TIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENAL 185 (201)
T ss_dssp EEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCE
T ss_pred cEeCCcEEEeEeeeEcCCcEECCCCEECCCCEEeeecCCCCE
Confidence 566777777666655 56788899999999997654
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=8.4e-09 Score=92.80 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=46.8
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS 153 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~ 153 (523)
|.++.||||||| +|+||+. .||+|++++|+|||+|+++.+... +.+++|+++...
T Consensus 1 M~~i~~iILAgG--~ssRmG~----~~K~ll~~~g~~ll~~~l~~l~~~--~~~ivv~~~~~~ 55 (188)
T d1e5ka_ 1 MTTITGVVLAGG--KARRMGG----VDKGLLELNGKPLWQHVADALMTQ--LSHVVVNANRHQ 55 (188)
T ss_dssp CCSEEEEEECCC--CCSSSCS----SCGGGSEETTEEHHHHHHHHHHHH--CSCEEEECSSSH
T ss_pred CCceeEEEEcCC--CCcCCCC----CCcccCEECCEehhHHHHhhhccc--ccccccccCccH
Confidence 455779999999 9999973 389999999999999999999864 677888887654
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=98.72 E-value=8.2e-08 Score=88.42 Aligned_cols=165 Identities=11% Similarity=0.057 Sum_probs=91.6
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
|||+|.| .++|+ | .|+|++|+|+|||+|+++.+.++..+++|+|.+. .+.+.+.+.. ++..+ +..
T Consensus 7 aiIpar~--~S~R~-p-----~K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td--~~~i~~i~~~----~~~~~-~~~ 71 (225)
T d1eyra_ 7 AVILARQ--NSKGL-P-----LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTD--GGLIAEEAKN----FGVEV-VLR 71 (225)
T ss_dssp EEEECCS--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH----TTCEE-EEC
T ss_pred EEEccCC--CCcCC-C-----CccccccCCeEHHHHHHHHHHHcCCCceEEEeec--cchhhhhhhh----hccee-eee
Confidence 6788877 77888 6 6999999999999999999998745788887775 3456665544 55555 333
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cch--H-H--HHHHHHhcCCcceEEEEEEe
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IRS--D-V--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~~--D-~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
.....+ ...+ +.+.++ .+.+....+. ++++. -+. + + +++.+.+.+ .+..+.+.+
T Consensus 72 ~~~~~~-----------~~~~--~~~~~~~~~~~~~~~~d~-ii~~~~~~P~~~~~~I~~~i~~~~~~~--~d~~~~~~~ 135 (225)
T d1eyra_ 72 PAELAS-----------DTAS--SISGVIHALETIGSNSGT-VTLLQPTSPLRTGAHIREAFSLFDEKI--KGSVVSACP 135 (225)
T ss_dssp CHHHHS-----------TTCC--HHHHHHHHHHHHTCCSEE-EEECCTTCTTCCHHHHHHHHTTCCTTT--CCCEEEEEE
T ss_pred cccccc-----------cccc--chhhccccccccccccce-EEEeeccccccccccccccceeecccc--ccccceeec
Confidence 322221 0000 223333 3344333444 55544 111 2 2 444444444 554444444
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCC-------CcccceeeeeEEEeeHHHHHH
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPS-------TFVSTLVNCGVYLFSLDIFQN 295 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~-------~~~~~l~~~Giyif~~~il~~ 295 (523)
.. .. .+..+....+ +.+..+..... .......+.++|+++.+.+..
T Consensus 136 ~~-~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~g~iy~~~~~~l~~ 188 (225)
T d1eyra_ 136 ME-HH--PLKTLLQINN-GEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIA 188 (225)
T ss_dssp CS-SC--TTSCEEECSS-SCEEESSCGGGGTSCGGGSCCEEEEEEEEEEEEHHHHHH
T ss_pred cc-cc--cccccccccc-ccccccccccccccccccCcceeeecceeEEeeHHHHHH
Confidence 32 12 2222333333 55554433211 123446788999999886643
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.67 E-value=1.1e-07 Score=93.10 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=51.8
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEE-eeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I-~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
.+.+.+++.|+.++.|++++.|++++.||++|+|+ ++.| +++.|+++|.|++++.+.++.+..++.|..++.+.+
T Consensus 63 nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~i~g 138 (320)
T d2f9ca1 63 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILA 138 (320)
T ss_dssp TCEECSSCEECTTCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCEECC
T ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcEEEC
Confidence 45666666666666666666666666666666665 4555 446677777777777667777777888888888754
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=98.65 E-value=1.1e-08 Score=93.89 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=46.5
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY 151 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~ 151 (523)
.+|||||| .|+||+. ..||+|++++|+|||+|+++.+.+...+++|+|++..
T Consensus 3 s~IILAaG--~g~Rmg~---~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~ 54 (205)
T d1w55a1 3 SLIMLAAG--NSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSN 54 (205)
T ss_dssp EEEEECCS--CCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESC
T ss_pred EEEEeCCc--cCeeCCc---CCCceeEEECCEEHHHHHHHHHHhhcccccccccccc
Confidence 48999999 9999987 8899999999999999999999987677888877653
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.60 E-value=1.1e-08 Score=93.80 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=31.4
Q ss_pred ecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCccc
Q psy17795 477 FNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTRSFKNEIL 522 (523)
Q Consensus 477 ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~~i 522 (523)
+...+.|.++ +.||.+|.|.+|+.| .+++|+++++|++++|+..+
T Consensus 110 i~g~v~IGd~-v~IG~~~~I~~gv~IG~~~~IgagSvV~kdv~~~~i 155 (203)
T d1mr7a_ 110 IKGDTIIGND-VWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYML 155 (203)
T ss_dssp CCCCEEECSS-CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred CccCeEECCE-EEECCceeEEeEEEEcCCCEEecCeEEeeeCCCCEE
Confidence 3334445555 666778888888888 77888888888888875543
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.58 E-value=9.8e-07 Score=87.64 Aligned_cols=192 Identities=13% Similarity=0.137 Sum_probs=124.1
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC-CcchHHHHHHHHhc-----CCCccEEEEEccC-ChHHHHHHHHhhhh
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA-GLPMIQHHIEACVQ-----VPNLKEIIILGYY-PSADLQKFVLDMVQ 165 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~-g~pli~~~l~~~~~-----~~g~~~i~vv~~~-~~~~i~~~l~~~~~ 165 (523)
+.-+|+|||| .||||+. ..||.++||+ |+++++..++++.. ...+. ++|.+.+ ..+++++||++. .
T Consensus 74 kvavv~LaGG--~GTRLG~---~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP-~~iMtS~~T~~~t~~~l~~~-~ 146 (378)
T d2icya2 74 KLVVLKLNGG--LGTTMGC---TGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVP-LVLMNSFNTHDDTHKIVEKY-T 146 (378)
T ss_dssp TEEEEEEECC--BSGGGTC---CSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCC-EEEEECTTTHHHHHHHHGGG-T
T ss_pred CEEEEEecCC--cccccCC---CCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCC-EEEECCCCChHHHHHHHHHh-c
Confidence 3557889999 9999986 8999999996 78999999999863 11333 5555555 778999999884 4
Q ss_pred ccCeeEEEEeccc-cc--chhhhhc-----cccccccc-CCCchhHHH-------Hh-hcccCCcceEEEEc-----cch
Q psy17795 166 EYKINIRYLQEFW-DI--IHQQICI-----SLYWTWYR-NTRSTYGIY-------RN-SLHWVQEAVYFTLE-----IRS 223 (523)
Q Consensus 166 ~~~~~i~~~~~~~-~~--g~~~~~~-----~~~~~~~~-g~~ta~al~-------~~-~i~~~~d~~~Lvl~-----i~~ 223 (523)
.+++++.+..|.. |. .+..... .....|+. | .++... .+ +.....++ +.+.+ -..
T Consensus 147 ~fg~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~G--hGdi~~aL~~sG~Ld~l~~~Giey-i~v~~vDNl~a~~ 223 (378)
T d2icya2 147 NSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPG--HGDVFPALMNSGKLDTFLSQGKEY-VFVANSDNLGAIV 223 (378)
T ss_dssp TSSSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCC--GGGHHHHHHHHSHHHHHHTTTCCE-EEEEETTBTTCCC
T ss_pred cCCCceEEEEecccccccCCcccccccccCCCcceeecCC--ChhhhHHHHhcChHHHHHhcCCEE-EEEEccCCccccc
Confidence 5677787766521 10 0000000 01225777 6 666554 22 22334566 66766 224
Q ss_pred HH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEE-EcCCCCcEEEEeecCCCc--------ccceeeeeEEEeeHHHH
Q psy17795 224 DV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIV-RKQQTSEISHYVEKPSTF--------VSTLVNCGVYLFSLDIF 293 (523)
Q Consensus 224 D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~-~d~~~~~V~~~~ekp~~~--------~~~l~~~Giyif~~~il 293 (523)
|. ++.+|.+.+ +++++-+.+...++ .+-|.+. .|.. -+|+++.|.|.+. ...+.+++.++|+-+.+
T Consensus 224 Dp~~lG~~~~~~--~~~~~kvv~Kt~~d-ek~G~l~~~dg~-~~vvEyse~p~e~~~~~~~~~~~~~~N~nn~~~~l~~l 299 (378)
T d2icya2 224 DLTILKHLIQNK--NEYCMEVTPKTLAD-VKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAI 299 (378)
T ss_dssp CHHHHHHHHHHT--CSEEEEEEECCTTC-CSSCEEEEETTE-EEEECGGGSCGGGHHHHHSSSSCCEEEEEEEEEEHHHH
T ss_pred chHHHHHHHhcC--CcceeEEEecCCCC-CceeEEEEECCc-eeeeehhcCChhHHhhhcCCcCcceeeeeeeeeeHHHH
Confidence 55 888998888 88887777653333 2345544 4433 4677777777531 23357999999999988
Q ss_pred HHHHH
Q psy17795 294 QNIAA 298 (523)
Q Consensus 294 ~~l~~ 298 (523)
+.+.+
T Consensus 300 ~~~~~ 304 (378)
T d2icya2 300 KKLVE 304 (378)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.57 E-value=3e-07 Score=86.07 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=47.5
Q ss_pred CceEecCcEECCCCEECC--CCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEE---eceEECCCCEECCCcEEc
Q psy17795 382 QCKTIGDVYIHSSASVHP--TAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV---LNSIVGRNSKVGNWSRVE 456 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I---~~~iIg~~~~Ig~~~~i~ 456 (523)
+..|++.+.|+++++|.. +.+|++++.||++|.|..++.++. .... ...+||++|.||.||+|.
T Consensus 137 g~~I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i~~~v~~~~-----------~~~~~~~~~~~Ig~~v~IGaga~Il 205 (241)
T d1ssqa_ 137 DVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGG-----------TGKESGDRHPKVREGVMIGAGAKIL 205 (241)
T ss_dssp SCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEEC-----------CSSSCSSCSCEECTTCEECTTCEEE
T ss_pred eeccccCCEEccCcccCccceEEEeccceecCCeeecccccccc-----------cccCCCCCCCccCCCeEECCCCEEc
Confidence 456666666666666644 444555555555555555554432 1111 146677777777777776
Q ss_pred CCCCCCCCCCCceecCCCCeecCCCeecC
Q psy17795 457 GTPCDPNPNKAFAKMDNPPLFNSNGKLNP 485 (523)
Q Consensus 457 ~~~~~~~~~~~~v~I~~~~~ig~~~~i~~ 485 (523)
+ .++||+++.||++++|..
T Consensus 206 g----------~v~IG~~a~IgAgsvV~k 224 (241)
T d1ssqa_ 206 G----------NIEVGKYAKIGANSVVLN 224 (241)
T ss_dssp S----------SCEECTTCEECTTCEECS
T ss_pred C----------CcEECCCCEECCCCEECC
Confidence 5 366777777777764433
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.46 E-value=1.5e-06 Score=79.93 Aligned_cols=65 Identities=12% Similarity=0.236 Sum_probs=51.8
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
.+-|||+|.| .++|+ | .|+|.+|+|+|||+|+++++.++..+++|+|.+.. +.+.+.... ++..+
T Consensus 3 ki~aiIpaR~--~S~Rl-p-----~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~--~~i~~~~~~----~~~~~ 67 (228)
T d1qwja_ 3 HLAALVLARG--GSKGI-P-----LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDH--DEIENVAKQ----FGAQV 67 (228)
T ss_dssp CEEEEEECCS--CCSSS-S-----CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESC--HHHHHHHHH----TTCEE
T ss_pred CEEEEeccCC--CCCCC-C-----CcchhhhCCeeHHHHHHHHHHhcCCcceEEEecch--hhhhhhhhh----cCccc
Confidence 4569999999 89998 6 69999999999999999999887678888888753 355555544 45554
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.43 E-value=1.5e-06 Score=84.79 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=52.2
Q ss_pred ecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 386 IGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 386 ~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
++++.+.+++.|++++.|++++.|+++++|++++.|+++.|.+++.|+++|.|.+..+-.++.+..++.+.+
T Consensus 61 ~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~ 132 (320)
T d2f9ca1 61 DENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLN 132 (320)
T ss_dssp STTCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSEEECSSCEEES
T ss_pred CCCcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeC
Confidence 456777777777777777777888888888888877778888888888888887444445556666666644
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.34 E-value=5.7e-07 Score=82.28 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=24.0
Q ss_pred EEeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCccc
Q psy17795 488 TILGDGVTVPGELIV-LNSIVLPYKELTRSFKNEIL 522 (523)
Q Consensus 488 ~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~~i 522 (523)
++||.+|.|.++++| .+++|++++.|+.++|+..+
T Consensus 115 v~IG~~s~I~~gv~IG~~~vIgagSvVtkdvp~~si 150 (208)
T d1xata_ 115 VWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAI 150 (208)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred eEECccccccCCeEeCCCCEEeCceEEeecCCcCcE
Confidence 445555555555555 67888888999888886544
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=97.44 E-value=0.0016 Score=66.21 Aligned_cols=191 Identities=12% Similarity=0.064 Sum_probs=112.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCccccee---CCcchHHHHHHHHhcC---------CCcc-EEEEEccC-ChHHHHHH
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPV---AGLPMIQHHIEACVQV---------PNLK-EIIILGYY-PSADLQKF 159 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i---~g~pli~~~l~~~~~~---------~g~~-~i~vv~~~-~~~~i~~~ 159 (523)
+-+|+|||| .||||+- .-||.++|| .|+++++..++.+... .+.. -++|.+.. ..+++++|
T Consensus 103 vavvllaGG--~GTRLG~---~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~~ 177 (501)
T d1jv1a_ 103 VAVLLLAGG--QGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEF 177 (501)
T ss_dssp EEEEEECCC--CCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHH
T ss_pred EEEEEECCC--ccccCCC---CCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHHH
Confidence 457888888 9999987 889999998 4789999988876542 0111 24555555 77899999
Q ss_pred HHhhhhccCee---EEEEeccc-cc----chhhhhccccccccc-CCCchhHHH-------Hhhcc-cCCcceEEEEc--
Q psy17795 160 VLDMVQEYKIN---IRYLQEFW-DI----IHQQICISLYWTWYR-NTRSTYGIY-------RNSLH-WVQEAVYFTLE-- 220 (523)
Q Consensus 160 l~~~~~~~~~~---i~~~~~~~-~~----g~~~~~~~~~~~~~~-g~~ta~al~-------~~~i~-~~~d~~~Lvl~-- 220 (523)
|.+. ..+|++ |.+..|.. |. |.-...-....-|+. | .++... .+.+. ..-++ +.+.+
T Consensus 178 l~~~-~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~G--hG~i~~aL~~sG~ld~l~~~Gi~y-i~v~~vD 253 (501)
T d1jv1a_ 178 FTKH-KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDG--NGGLYRALAAQNIVEDMEQRGIWS-IHVYCVD 253 (501)
T ss_dssp HHHT-GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECC--GGGHHHHHHHTTHHHHHHHTTCCE-EEEEETT
T ss_pred HHhc-cccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCC--chHHHHHHHHCCcHHHHHHCCCEE-EEEEecC
Confidence 9984 334543 65555521 10 100000000113444 3 444433 22222 23455 55555
Q ss_pred -c---chHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcCCCCc--EEEEeecCC----------Ccccceeee
Q psy17795 221 -I---RSDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSE--ISHYVEKPS----------TFVSTLVNC 283 (523)
Q Consensus 221 -i---~~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~--V~~~~ekp~----------~~~~~l~~~ 283 (523)
. ..|. ++-++...+ +++.+-+.+...++ ..-|.+... + |+ |+++.|-|. .......|+
T Consensus 254 N~l~~~~Dp~~lG~~~~~~--~~~~~kvv~k~~~~-e~~G~l~~~-d-g~~~vvEysel~~~~~~~~~~~g~l~f~~~Ni 328 (501)
T d1jv1a_ 254 NILVKVADPRFIGFCIQKG--ADCGAKVVEKTNPT-EPVGVVCRV-D-GVYQVVEYSEISLATAQKRSSDGRLLFNAGNI 328 (501)
T ss_dssp BTTCCTTCHHHHHHHHHTT--CSEEEEEEECCSTT-CSCCEEEEE-T-TEEEEECGGGSCHHHHHCBCTTSSBSSCEEEE
T ss_pred CccccccCHHHHHHHHhcc--cceeEEEEEcCCCC-cccceEEEE-C-CeEEEEEeccCCHHHHhhccCCCcccccccce
Confidence 1 3566 888998888 88777776543222 356766543 2 44 445444332 112346889
Q ss_pred eEEEeeHHHHHHHHH
Q psy17795 284 GVYLFSLDIFQNIAA 298 (523)
Q Consensus 284 Giyif~~~il~~l~~ 298 (523)
+.++|+-++++.+.+
T Consensus 329 ~~~~fsl~fl~~~~~ 343 (501)
T d1jv1a_ 329 ANHFFTVPFLRDVVN 343 (501)
T ss_dssp EEEEEEHHHHHHHHH
T ss_pred eheeeEHHHHHHHHH
Confidence 999999998887654
|